BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7902
(342 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZV6|A Chain A, Crystal Structure Of Human Squamous Cell Carcinoma Antigen
1
pdb|2ZV6|B Chain B, Crystal Structure Of Human Squamous Cell Carcinoma Antigen
1
pdb|2ZV6|C Chain C, Crystal Structure Of Human Squamous Cell Carcinoma Antigen
1
Length = 401
Score = 117 bits (293), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 115/389 (29%), Positives = 182/389 (46%), Gaps = 60/389 (15%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPE----NLD 56
+F FDL + K N+F SP SI AL + NT +K+VL +
Sbjct: 21 KFMFDLFQQFRKS-KENNIFYSPISITSALGMVLLGAKDNTAQQIKKVLHFDQVTENTTG 79
Query: 57 KLDTMNV-------YKMEKLIQGLRANADSGLTFTSTNKIFVNDK-IPVKECMTAI---F 105
K T +V ++ +KL+ + D+ NK+F + ++E + AI +
Sbjct: 80 KAATYHVDRSGNVHHQFQKLLTEFNKSTDA-YELKIANKLFGEKTYLFLQEYLDAIKKFY 138
Query: 106 PSEIQSMDFGNEVEAARA-INSWVAQETKNNIKDLIATGQVNSRTNLVL---------WL 155
+ ++S+DF N E +R INSWV +T IK+LI G + S T LVL W
Sbjct: 139 QTSVESVDFANAPEESRKKINSWVESQTNEKIKNLIPEGNIGSNTTLVLVNAIYFKGQWE 198
Query: 156 P----------------STQESIIIITVLSS-------ELNAHILEVPYKGGNMSMFFLL 192
+T +SI ++ +S ++ A +LE+PYKG ++SM LL
Sbjct: 199 KKFNKEDTKEEKFWPNKNTYKSIQMMRQYTSFHFASLEDVQAKVLEIPYKGKDLSMIVLL 258
Query: 193 PPFASQDGVGDILAALKKDPTSFKRFTEDS-QNLKP--VEIAIPKFSLTQEMNLIPTLSD 249
P DG L L++ T+ K S QN++ V++ +P+F + + +L TL
Sbjct: 259 P--NEIDG----LQKLEEKLTAEKLMEWTSLQNMRETRVDLHLPRFKVEESYDLKDTLRT 312
Query: 250 LGVKDLFSPGADLSRLTDSH-IAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPV 308
+G+ D+F+ ADLS +T S + +HKA +++ E+G V F SS
Sbjct: 313 MGMVDIFNGDADLSGMTGSRGLVLSGVLHKAFVEVTEEGAEAAAATAVVGFGSSPTSTNE 372
Query: 309 RYEANHPFLYFLVDKEIQSILFAGVFNEP 337
+ NHPFL+F+ + SILF G F+ P
Sbjct: 373 EFHCNHPFLFFIRQNKTNSILFYGRFSSP 401
>pdb|2DUT|A Chain A, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
pdb|2DUT|B Chain B, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
pdb|2DUT|C Chain C, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
pdb|2DUT|D Chain D, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
Length = 423
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/379 (25%), Positives = 176/379 (46%), Gaps = 52/379 (13%)
Query: 2 FTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTM 61
FT DL LN N+ KN+F SP+SI AL Y + +T + +VL +
Sbjct: 52 FTVDLFNKLNETNRDKNIFFSPWSISSALALTYLAAKGSTAREMAEVLHFEQ------AE 105
Query: 62 NVYKMEKLIQGLRANADSGLTFTSTNKIFVNDK---IPVK-ECMTAIFPSEIQSMDFGNE 117
N++ K + + + S N+I+V +P + + +E Q ++F
Sbjct: 106 NIHSGFKELLTAFNKPRNNYSLRSANRIYVEKTYALLPTYLQLSKKYYKAEPQKVNFKTA 165
Query: 118 VEAARA-INSWVAQETKNNIKDLIATGQVNSRTNLVL---------WLPSTQESIIII-- 165
E +R IN+WV ++T++ IK+L+++ V + T L+L W Q I
Sbjct: 166 PEQSRKEINTWVEKQTESKIKNLLSSDDVKATTRLILVNAIYFKAEWEVKFQAEKTSIQP 225
Query: 166 ---------------------TVLSSELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDI 204
++ ++N ++E+PY +SMF LLP G
Sbjct: 226 FRLSKNKSKPVKMMYMRDTFPVLIMEKMNFKMIELPYVKRELSMFILLPDDIKDGTTG-- 283
Query: 205 LAALKKDPTSFKRFTE--DSQNLKP--VEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGA 260
L L+++ T ++R +E DS+ + V++ +PKFSL ++L TL ++G+ F+ A
Sbjct: 284 LEQLERELT-YERLSEWADSKMMTETLVDLHLPKFSLEDRIDLRDTLRNMGMTTAFTTNA 342
Query: 261 DLSRLTDSH-IAFGDAVHKARLDLDEQGXXXXXXXXV-FAFRSSRPLEPVRYEANHPFLY 318
D +TD +A +H++ + +DE+G V +F +S ++++ +HPF +
Sbjct: 343 DFRGMTDKKDLAISKVIHQSFVAVDEKGTEAAAATAVIISFTTSVINHVLKFKVDHPFHF 402
Query: 319 FLVDKEIQSILFAGVFNEP 337
F+ + ++ILF G F P
Sbjct: 403 FIRHNKSKTILFFGRFCCP 421
>pdb|1BY7|A Chain A, Human Plasminogen Activator Inhibitor-2. Loop (66-98)
Deletion Mutant
pdb|1JRR|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletionmutant] Complexed With Peptide Mimicking The
Reactive Center Loop
Length = 382
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 107/385 (27%), Positives = 175/385 (45%), Gaps = 62/385 (16%)
Query: 2 FTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTM 61
F +L L A+ +N+F+SP+SI + Y S +TE + +VL+ E D
Sbjct: 11 FALNLFKHLAKASPTQNLFLSPWSISSTMAMVYMGSRGSTEDQMAKVLQFNEVGAAAD-- 68
Query: 62 NVYKMEKLIQGLRA--NADSG-LTFTSTNKIFVNDKIPVKE----CMTAIFPSEIQSMDF 114
K+ + L + NA +G S NK+F +E + SE Q++DF
Sbjct: 69 ---KIHSSFRSLSSAINASTGNYLLESVNKLFGEKSASFREEYIRLCQKYYSSEPQAVDF 125
Query: 115 GNEVEAARA-INSWVAQETKNNIKDLIATGQVNSRTNLVL---------W---------- 154
E AR INSWV +TK I +L+ G V+ T +VL W
Sbjct: 126 LECAEEARKKINSWVKTQTKGKIPNLLPEGSVDGDTRMVLVNAVYFKGKWKTPFEKKLNG 185
Query: 155 -----LPSTQESIIIITVLSSELN--------AHILEVPYKGGNMSMFFLLPPFASQDGV 201
+ S Q + + + L +LN A ILE+PY G++SMF LLP D +
Sbjct: 186 LYPFRVNSAQRTPVQMMYLREKLNIGYIEDLKAQILELPY-AGDVSMFLLLP-----DEI 239
Query: 202 GDILAALK--KDPTSFKRF----TEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDL 255
D+ L+ + ++ + ++D VE+ IP+F L + L L +G++D
Sbjct: 240 ADVSTGLELLESEITYDKLNKWTSKDKMAEDEVEVYIPQFKLEEHYELRSILRSMGMEDA 299
Query: 256 FSPG-ADLSRLTDSHIAF-GDAVHKARLDLDEQGXXXXX-XXXVFAFRSSRPLEPVRYEA 312
F+ G A+ S +++ + F + H+A +D++E+G V R+ ++ A
Sbjct: 300 FNKGRANFSGMSERNDLFLSEVFHQAMVDVNEEGTEAAAGTGGVMTGRTGHG--GPQFVA 357
Query: 313 NHPFLYFLVDKEIQSILFAGVFNEP 337
+HPFL+ ++ K ILF G F+ P
Sbjct: 358 DHPFLFLIMHKITNCILFFGRFSSP 382
>pdb|2ARQ|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletion Mutant] Complexed With Peptide
N-Acetyl-Teaaagdggvmtgr-Oh
pdb|2ARR|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletion Mutant] Complexed With Peptide
N-acetyl-teaaagmggvmtgr-oh
Length = 382
Score = 114 bits (285), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 106/384 (27%), Positives = 173/384 (45%), Gaps = 60/384 (15%)
Query: 2 FTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTM 61
F +L L A+ +N+F+SP+SI + Y S +TE + VL+ E D
Sbjct: 11 FALNLFKHLAKASPTQNLFLSPWSISSTMAMVYMGSRGSTEDQMASVLQFNEVGAAAD-- 68
Query: 62 NVYKMEKLIQGLRA--NADSG-LTFTSTNKIFVNDKIPVKE----CMTAIFPSEIQSMDF 114
K+ + L + NA +G S NK+F +E + SE Q++DF
Sbjct: 69 ---KIHSSFRSLSSAINASTGNYLLESVNKLFGEKSASFREEYIRLCQKYYSSEPQAVDF 125
Query: 115 GNEVEAARA-INSWVAQETKNNIKDLIATGQVNSRTNLVL---------W---------- 154
E AR INSWV +TK I +L+ G V+ T +VL W
Sbjct: 126 LECAEEARKKINSWVKTQTKGKIPNLLPEGSVDGDTRMVLVNAVYFKGKWKTPFEKKLNG 185
Query: 155 -----LPSTQESIIIITVLSSELN--------AHILEVPYKGGNMSMFFLLPPFASQDGV 201
+ S Q + + + L +LN A ILE+PY G++SMF LLP D +
Sbjct: 186 LFPFRVNSAQRTPVQMMYLREKLNIGYIEDLKAQILELPY-AGDVSMFLLLP-----DEI 239
Query: 202 GDILAALK--KDPTSFKRF----TEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDL 255
D+ L+ + ++ + ++D VE+ IP+F L + L L +G++D
Sbjct: 240 ADVSTGLELLESEITYDKLNKWTSKDKMAEDEVEVYIPQFKLEEHYELRSILRSMGMEDA 299
Query: 256 FSPG-ADLSRLTDSHIAF-GDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVRYEAN 313
F+ G A+ S +++ + F + H+A +D++E+G + P ++ A+
Sbjct: 300 FNKGRANFSGMSERNDLFLSEVFHQAMVDVNEEGTEAAAGTGGVMTGRTGHGGP-QFVAD 358
Query: 314 HPFLYFLVDKEIQSILFAGVFNEP 337
HPFL+ ++ K ILF G F+ P
Sbjct: 359 HPFLFLIMHKITNCILFFGRFSSP 382
>pdb|2OL2|A Chain A, High Resolution Structure Of Native Pci In Space Group P21
pdb|2OL2|B Chain B, High Resolution Structure Of Native Pci In Space Group P21
pdb|3B9F|I Chain I, 1.6 A Structure Of The Pci-Thrombin-Heparin Complex
Length = 395
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 105/376 (27%), Positives = 178/376 (47%), Gaps = 55/376 (14%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+FTFDL L +A +N+F SP SI +L + +T+ + + L L NL K
Sbjct: 36 DFTFDLYRALASAAPSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGL--NLQKSSE 93
Query: 61 MNVYK-MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKE----CMTAIFPSEIQSMDFG 115
+++ ++L+Q L D G + N +F + + +++ M ++ ++ +F
Sbjct: 94 KELHRGFQQLLQELNQPRD-GFQLSLGNALFTDLVVDLQDTFVSAMKTLYLADTFPTNFR 152
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLV-------LWLPS----------- 157
+ A + IN +VA++TK I DL+ N+ +V W S
Sbjct: 153 DSAGAMKQINDYVAKQTKGKIVDLLKNLDSNAVVIMVNYIFFKAKWETSFNHKGTQEQDF 212
Query: 158 --TQESIIIITVLSSE----------LNAHILEVPYKGGNMSMFFLLPPFASQDGVGDIL 205
T E+++ + ++S E L+ ++ VPY+G N + F+LP V + L
Sbjct: 213 YVTSETVVRVPMMSREDQYHYLLDRNLSCRVVGVPYQG-NATALFILPSEGKMQQVENGL 271
Query: 206 A--ALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLS 263
+ L+K FK+ + +E+ +PKFS+ L L LG+ ++F+ ADLS
Sbjct: 272 SEKTLRKWLKMFKK--------RQLELYLPKFSIEGSYQLEKVLPSLGISNVFTSHADLS 323
Query: 264 RLTD-SHIAFGDAVHKARLDLDEQGXXXXXXX-XVFAFRSSRPLEPVRYEANHPFLYFLV 321
+++ S+I + VHKA +++DE G +F FRS+R L R N PFL F+V
Sbjct: 324 GISNHSNIQVSEMVHKAVVEVDESGTRAAAATGTIFTFRSAR-LNSQRLVFNRPFLMFIV 382
Query: 322 DKEIQSILFAGVFNEP 337
D +ILF G N P
Sbjct: 383 DN---NILFLGKVNRP 395
>pdb|2HI9|A Chain A, Crystal Structure Of Human Native Protein C Inhibitor
pdb|2HI9|B Chain B, Crystal Structure Of Human Native Protein C Inhibitor
pdb|2HI9|C Chain C, Crystal Structure Of Human Native Protein C Inhibitor
Length = 363
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 105/376 (27%), Positives = 178/376 (47%), Gaps = 55/376 (14%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+FTFDL L +A +N+F SP SI +L + +T+ + + L L NL K
Sbjct: 4 DFTFDLYRALASAAPSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGL--NLQKSSE 61
Query: 61 MNVYK-MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKE----CMTAIFPSEIQSMDFG 115
+++ ++L+Q L D G + N +F + + +++ M ++ ++ +F
Sbjct: 62 KELHRGFQQLLQELNQPRD-GFQLSLGNALFTDLVVDLQDTFVSAMKTLYLADTFPTNFR 120
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLV-------LWLPS----------- 157
+ A + IN +VA++TK I DL+ N+ +V W S
Sbjct: 121 DSAGAMKQINDYVAKQTKGKIVDLLKNLDSNAVVIMVNYIFFKAKWETSFNHKGTQEQDF 180
Query: 158 --TQESIIIITVLSSE----------LNAHILEVPYKGGNMSMFFLLPPFASQDGVGDIL 205
T E+++ + ++S E L+ ++ VPY+G N + F+LP V + L
Sbjct: 181 YVTSETVVRVPMMSREDQYHYLLDRNLSCRVVGVPYQG-NATALFILPSEGKMQQVENGL 239
Query: 206 A--ALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLS 263
+ L+K FK+ + +E+ +PKFS+ L L LG+ ++F+ ADLS
Sbjct: 240 SEKTLRKWLKMFKK--------RQLELYLPKFSIEGSYQLEKVLPSLGISNVFTSHADLS 291
Query: 264 RLTD-SHIAFGDAVHKARLDLDEQGXXXXXXX-XVFAFRSSRPLEPVRYEANHPFLYFLV 321
+++ S+I + VHKA +++DE G +F FRS+R L R N PFL F+V
Sbjct: 292 GISNHSNIQVSEMVHKAVVEVDESGTRAAAATGTIFTFRSAR-LNSQRLVFNRPFLMFIV 350
Query: 322 DKEIQSILFAGVFNEP 337
D +ILF G N P
Sbjct: 351 DN---NILFLGKVNRP 363
>pdb|2H4R|A Chain A, Crystal Structure Of Wildtype Ment In The Native
Conformation
Length = 415
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 102/402 (25%), Positives = 182/402 (45%), Gaps = 70/402 (17%)
Query: 2 FTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTM 61
FT DL LN N+ KN+F SP+SI AL Y + +T + +VL E + + ++
Sbjct: 16 FTVDLFNKLNETNRDKNIFFSPWSISSALALTYLAAKGSTAREMAEVLHFTEAV-RAESS 74
Query: 62 NVYKMEKLIQGLR---------ANADSGL--------------TFTSTNKIFVNDK---I 95
+V + + R N SG + S N+I+V +
Sbjct: 75 SVARPSRGRPKRRRMDPEHEQAENIHSGFKELLTAFNKPRNNYSLRSANRIYVEKTYALL 134
Query: 96 PVK-ECMTAIFPSEIQSMDFGNEVEAARA-INSWVAQETKNNIKDLIATGQVNSRTNLVL 153
P + + +E Q ++F E +R IN+WV ++T++ IK+L+++ V + T L+L
Sbjct: 135 PTYLQLSKKYYKAEPQKVNFKTAPEQSRKEINTWVEKQTESKIKNLLSSDDVKATTRLIL 194
Query: 154 ---------WLPSTQESIIII-----------------------TVLSSELNAHILEVPY 181
W Q I ++ ++N ++E+PY
Sbjct: 195 VNAIYFKAEWEVKFQAEKTSIQPFRLSKNKSKPVKMMYMRDTFPVLIMEKMNFKMIELPY 254
Query: 182 KGGNMSMFFLLPPFASQDGVGDILAALKKDPTSFKRFTE--DSQNLKP--VEIAIPKFSL 237
+SMF LLP G L L+++ T ++R +E DS+ + V++ +PKFSL
Sbjct: 255 VKRELSMFILLPDDIKDGTTG--LEQLERELT-YERLSEWADSKMMTETLVDLHLPKFSL 311
Query: 238 TQEMNLIPTLSDLGVKDLFSPGADLSRLTDSH-IAFGDAVHKARLDLDEQGXXXXXXXXV 296
++L TL ++G+ F+ AD +TD +A +H++ + +DE+G V
Sbjct: 312 EDRIDLRDTLRNMGMTTAFTTNADFRGMTDKKDLAISKVIHQSFVAVDEKGTEAAAATAV 371
Query: 297 -FAFRSSRPLEPVRYEANHPFLYFLVDKEIQSILFAGVFNEP 337
+F +S ++++ +HPF +F+ + ++ILF G F P
Sbjct: 372 IISFTTSVINHVLKFKVDHPFHFFIRHNKSKTILFFGRFCCP 413
>pdb|2VDX|A Chain A, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin
pdb|2VDX|B Chain B, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin
pdb|2VDY|A Chain A, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin Complexed With Cortisol
pdb|2VDY|B Chain B, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin Complexed With Cortisol
Length = 373
Score = 107 bits (267), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 103/367 (28%), Positives = 176/367 (47%), Gaps = 51/367 (13%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+F F L L + KN+F+SP SI AL + +T A L Q L NL +
Sbjct: 13 DFAFSLYKHLVALSPKKNIFISPVSISMALAMLSLGTCGHTRAQLLQGLGF--NLTERSE 70
Query: 61 MNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTA----IFPSEIQSMDFGN 116
+++ + + L A +D+ L T N +F++ + + E +A + SE+ +M+F +
Sbjct: 71 TEIHQGFQHLHQLFAKSDTSLEMTMGNALFLDGSLELLESFSADIKHYYESEVLAMNFQD 130
Query: 117 EVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVL---------W-----LPSTQE-- 160
A+R INS+V +T+ I DL + ++S LVL W L ST+E
Sbjct: 131 WATASRQINSYVKNKTQGKIVDLFSG--LDSPAILVLVNYIFFKGTWTQPFDLASTREEN 188
Query: 161 ----------------SIIIITVLSSELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDI 204
S I + SEL ++++ Y GN ++FF+LP + + +
Sbjct: 189 FYVDETTVVKVPMMLQSSTISYLHDSELPCQLVQMNYV-GNGTVFFILP---DKGKMNTV 244
Query: 205 LAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSR 264
+AAL +D + R++ + V++ IPK +++ +L L ++G+ DLF+ A+ SR
Sbjct: 245 IAALSRD--TINRWSAGLTS-SQVDLYIPKVTISGVYDLGDVLEEMGIADLFTTQANFSR 301
Query: 265 LT-DSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVRYEANHPFLYFLVDK 323
+T D+ + VHKA L L+E+G + A S+P+ +R+ N PF+ + D
Sbjct: 302 ITQDAQLKSSKVVHKAVLQLNEEGTEAAGAMFLEAIPRSKPI-ILRF--NQPFIIMIFDH 358
Query: 324 EIQSILF 330
S LF
Sbjct: 359 FTWSSLF 365
>pdb|3VVJ|A Chain A, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
pdb|3VVJ|B Chain B, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
pdb|3VVJ|C Chain C, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
Length = 392
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 96/386 (24%), Positives = 174/386 (45%), Gaps = 68/386 (17%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRL------PEN 54
EF FD+ L + +N+ SP SI L + + +NT+ +++V+ E+
Sbjct: 10 EFCFDMFKELKVHHVNENIIYSPLSIISILSMVFLGARENTKTQMEKVIHFDKITGFGES 69
Query: 55 LDKL--DTMNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVK----ECMTAIFPSE 108
L+ +++V+ K I + + +K++ + PV +C+ ++
Sbjct: 70 LESQCGTSVSVHASLKDILSEITKPSDNYSLSLASKLYAEETYPVLPEYLQCIKELYKGS 129
Query: 109 IQSMDFGNEVEAARA-INSWVAQETKNNIKDLIATGQVNSRTNLVL---------WLPS- 157
++++ F + AR INSWV +T IK+ + G V+ +T +VL W +
Sbjct: 130 LETVSFQTAADQARELINSWVETQTNGVIKNFLQPGSVDPQTEMVLVDAIYFKGTWEKAF 189
Query: 158 ----TQE--------------------SIIIITVLSSELNAHILEVPYKGGNMSMFFLLP 193
TQE S + TV + ++ ILE+PY G +SMF LLP
Sbjct: 190 KDEDTQEVPFRITEQESKPVQMMYQAGSFKVATVAAEKMK--ILELPYASGELSMFVLLP 247
Query: 194 PFASQDGVGDILAALKKDPT--SFKRFTE-DSQNL---KPVEIAIPKFSLTQEMNLIPTL 247
D ++ L++ T S ++ +E S N+ + +++ +P + ++ NL L
Sbjct: 248 ---------DDISGLEQLETTISIEKLSEWTSSNMMEDRKMKVYLPHMKIEEKYNLTSVL 298
Query: 248 SDLGVKDLFSPGADLSRLTDSH-IAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLE 306
LG+ DLFSP A+LS ++ + + +A+H A +++ E G V +S E
Sbjct: 299 VALGMTDLFSPSANLSGISTAQTLKMSEAIHGAYVEIYEAGSEMATSTGVLVEAASVSEE 358
Query: 307 PVRYEANHPFLYFLVDKEIQSILFAG 332
+ +HPFL+ + SILF G
Sbjct: 359 ---FRVDHPFLFLIKHNPSNSILFFG 381
>pdb|1OVA|C Chain C, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
pdb|1OVA|D Chain D, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
Length = 386
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/390 (23%), Positives = 179/390 (45%), Gaps = 66/390 (16%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLR---LPENLDK 57
EF FD+ L + +N+F P +I AL Y + +T + +V+R LP D
Sbjct: 10 EFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDS 69
Query: 58 LD-----TMNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVK----ECMTAIFPSE 108
++ ++NV+ + I + +F+ ++++ ++ P+ +C+ ++
Sbjct: 70 IEAQCGTSVNVHSSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGG 129
Query: 109 IQSMDFGNEVEAARA-INSWVAQETKNNIKDLIATGQVNSRTNLVL---------W---- 154
++ ++F + AR INSWV +T I++++ V+S+T +VL W
Sbjct: 130 LEPINFQTAADQARELINSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIVFKGLWEKAF 189
Query: 155 -------LP---STQES----------IIIITVLSSELNAHILEVPYKGGNMSMFFLLPP 194
+P + QES + + ++SE ILE+P+ G MSM LLP
Sbjct: 190 KDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASE-KMKILELPFASGTMSMLVLLP- 247
Query: 195 FASQDGVGDILAALKKDPT--SFKRFTE-DSQNL---KPVEIAIPKFSLTQEMNLIPTLS 248
D ++ L++ + +F++ TE S N+ + +++ +P+ + ++ NL L
Sbjct: 248 --------DEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLM 299
Query: 249 DLGVKDLFSPGADLSRLTDSH-IAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEP 307
+G+ D+FS A+LS ++ + + AVH A +++E G +S E
Sbjct: 300 AMGITDVFSSSANLSGISSAESLKISQAVHAAHAEINEAGREVVGSAEAGVDAASVSEE- 358
Query: 308 VRYEANHPFLYFLVDKEIQSILFAGVFNEP 337
+ A+HPFL+ + ++LF G P
Sbjct: 359 --FRADHPFLFCIKHIATNAVLFFGRCVSP 386
>pdb|1JTI|A Chain A, Loop-Inserted Structure Of P1-P1' Cleaved Ovalbumin Mutant
R339t
pdb|1JTI|B Chain B, Loop-Inserted Structure Of P1-P1' Cleaved Ovalbumin Mutant
R339t
Length = 385
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/390 (23%), Positives = 179/390 (45%), Gaps = 66/390 (16%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLR---LPENLDK 57
EF FD+ L + +N+F P +I AL Y + +T + +V+R LP D
Sbjct: 9 EFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDS 68
Query: 58 LD-----TMNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVK----ECMTAIFPSE 108
++ ++NV+ + I + +F+ ++++ ++ P+ +C+ ++
Sbjct: 69 IEAQCGTSVNVHSSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGG 128
Query: 109 IQSMDFGNEVEAARA-INSWVAQETKNNIKDLIATGQVNSRTNLVL---------W---- 154
++ ++F + AR INSWV +T I++++ V+S+T +VL W
Sbjct: 129 LEPINFQTAADQARELINSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIVFKGLWEKTF 188
Query: 155 -------LP---STQES----------IIIITVLSSELNAHILEVPYKGGNMSMFFLLPP 194
+P + QES + + ++SE ILE+P+ G MSM LLP
Sbjct: 189 KDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASE-KMKILELPFASGTMSMLVLLP- 246
Query: 195 FASQDGVGDILAALKKDPT--SFKRFTE-DSQNL---KPVEIAIPKFSLTQEMNLIPTLS 248
D ++ L++ + +F++ TE S N+ + +++ +P+ + ++ NL L
Sbjct: 247 --------DEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLM 298
Query: 249 DLGVKDLFSPGADLSRLTDSH-IAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEP 307
+G+ D+FS A+LS ++ + + AVH A +++E G +S E
Sbjct: 299 AMGITDVFSSSANLSGISSAESLKISQAVHAAHAEINEAGTEVVGSAEAGVDAASVSEE- 357
Query: 308 VRYEANHPFLYFLVDKEIQSILFAGVFNEP 337
+ A+HPFL+ + ++LF G P
Sbjct: 358 --FRADHPFLFCIKHIATNAVLFFGRCVSP 385
>pdb|1OVA|B Chain B, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
Length = 386
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/390 (23%), Positives = 180/390 (46%), Gaps = 66/390 (16%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLR---LPENLDK 57
EF FD+ L + +N+F P +I AL Y + +T + +V+R LP D
Sbjct: 10 EFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDS 69
Query: 58 LD-----TMNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVK----ECMTAIFPSE 108
++ ++NV+ + I + +F+ ++++ ++ P+ +C+ ++
Sbjct: 70 IEAQCGTSVNVHSSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGG 129
Query: 109 IQSMDFGNEVEAARA-INSWVAQETKNNIKDLIATGQVNSRTNLVL---------W---- 154
++ ++F + AR INSWV +T I++++ V+S+T +VL W
Sbjct: 130 LEPINFQTAADQARELINSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIVFKGLWEKAF 189
Query: 155 -------LP---STQES----------IIIITVLSSELNAHILEVPYKGGNMSMFFLLPP 194
+P + QES + + ++SE ILE+P+ G MSM LLP
Sbjct: 190 KDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASE-KMKILELPFASGTMSMLVLLP- 247
Query: 195 FASQDGVGDILAALKKDPT--SFKRFTE-DSQNL---KPVEIAIPKFSLTQEMNLIPTLS 248
D ++ L++ + +F++ TE S N+ + +++ +P+ + ++ NL L
Sbjct: 248 --------DEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLM 299
Query: 249 DLGVKDLFSPGADLSRLTDSH-IAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEP 307
+G+ D+FS A+LS ++ + + AVH A +++E G +S E
Sbjct: 300 AMGITDVFSSSANLSGISSAESLKISQAVHAAHAEINEAGREVVGXAEAGVDAASVSEE- 358
Query: 308 VRYEANHPFLYFLVDKEIQSILFAGVFNEP 337
+ A+HPFL+ + ++LF G P
Sbjct: 359 --FRADHPFLFCIKHIATNAVLFFGRCVSP 386
>pdb|1OVA|A Chain A, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
Length = 386
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/390 (23%), Positives = 180/390 (46%), Gaps = 66/390 (16%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLR---LPENLDK 57
EF FD+ L + +N+F P +I AL Y + +T + +V+R LP D
Sbjct: 10 EFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDX 69
Query: 58 LD-----TMNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVK----ECMTAIFPSE 108
++ ++NV+ + I + +F+ ++++ ++ P+ +C+ ++
Sbjct: 70 IEAQCGTSVNVHSSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGG 129
Query: 109 IQSMDFGNEVEAARA-INSWVAQETKNNIKDLIATGQVNSRTNLVL---------W---- 154
++ ++F + AR INSWV +T I++++ V+S+T +VL W
Sbjct: 130 LEPINFQTAADQARELINSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIVFKGLWEKAF 189
Query: 155 -------LP---STQES----------IIIITVLSSELNAHILEVPYKGGNMSMFFLLPP 194
+P + QES + + ++SE ILE+P+ G MSM LLP
Sbjct: 190 KDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASE-KMKILELPFASGTMSMLVLLP- 247
Query: 195 FASQDGVGDILAALKKDPT--SFKRFTE-DSQNL---KPVEIAIPKFSLTQEMNLIPTLS 248
D ++ L++ + +F++ TE S N+ + +++ +P+ + ++ NL L
Sbjct: 248 --------DEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLM 299
Query: 249 DLGVKDLFSPGADLSRLTDSH-IAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEP 307
+G+ D+FS A+LS ++ + + AVH A +++E G +S E
Sbjct: 300 AMGITDVFSSSANLSGISSAESLKISQAVHAAHAEINEAGREVVGXAEAGVDAASVSEE- 358
Query: 308 VRYEANHPFLYFLVDKEIQSILFAGVFNEP 337
+ A+HPFL+ + ++LF G P
Sbjct: 359 --FRADHPFLFCIKHIATNAVLFFGRCVSP 386
>pdb|1UHG|A Chain A, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
pdb|1UHG|B Chain B, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
pdb|1UHG|C Chain C, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
pdb|1UHG|D Chain D, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
Length = 385
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 93/390 (23%), Positives = 180/390 (46%), Gaps = 66/390 (16%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLR---LPENLDK 57
EF FD+ L + +N+F P +I AL Y + +T + +V+R LP D
Sbjct: 9 EFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDX 68
Query: 58 LD-----TMNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVK----ECMTAIFPSE 108
++ ++NV+ + I + +F+ ++++ ++ P+ +C+ ++
Sbjct: 69 IEAQCGTSVNVHSSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGG 128
Query: 109 IQSMDFGNEVEAARA-INSWVAQETKNNIKDLIATGQVNSRTNLVL---------W---- 154
++ ++F + AR INSWV +T I++++ V+S+T +VL W
Sbjct: 129 LEPINFQTAADQARELINSWVESQTNGIIRNVLQPXSVDSQTAMVLVNAIVFKGLWEKAF 188
Query: 155 -------LP---STQES----------IIIITVLSSELNAHILEVPYKGGNMSMFFLLPP 194
+P + QES + + ++SE ILE+P+ G MSM LLP
Sbjct: 189 KDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASE-KMKILELPFAXGTMSMLVLLP- 246
Query: 195 FASQDGVGDILAALKKDPT--SFKRFTE-DSQNL---KPVEIAIPKFSLTQEMNLIPTLS 248
D ++ L++ + +F++ TE S N+ + +++ +P+ + ++ NL L
Sbjct: 247 --------DEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLM 298
Query: 249 DLGVKDLFSPGADLSRLTDSH-IAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEP 307
+G+ D+FS A+LS ++ + + AVH A +++E G +S E
Sbjct: 299 AMGITDVFSSSANLSGISSAEXLKISQAVHAAHAEINEAGREVVGXAEAGVDAASVSEE- 357
Query: 308 VRYEANHPFLYFLVDKEIQSILFAGVFNEP 337
+ A+HPFL+ + ++LF G P
Sbjct: 358 --FRADHPFLFCIKHIATNAVLFFGRCVSP 385
>pdb|1K9O|I Chain I, Crystal Structure Of Michaelis Serpin-Trypsin Complex
Length = 378
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/298 (29%), Positives = 138/298 (46%), Gaps = 51/298 (17%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+FT + + + AN G+NV +S FS+ L S + L + L LP +
Sbjct: 17 QFTAQMFSEVVKANPGQNVVLSAFSVLPPLGQLALASVGESHDELLRALALPND------ 70
Query: 61 MNVYK--MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTAI----FPSEIQSMDF 114
NV K L +G+RA G+ +KI+V + + + A+ F SE+Q++DF
Sbjct: 71 -NVTKDVFADLNRGVRAV--KGVDLKMASKIYVAKGLELNDDFAAVSRDVFGSEVQNVDF 127
Query: 115 GNEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVL---------WLP--------- 156
VEAA AIN WV +T N IK+L+ ++ T VL W
Sbjct: 128 VKSVEAAGAINKWVEDQTNNRIKNLVDPDALDETTRSVLVNAIYFKGSWKDKFVKERTMD 187
Query: 157 -----STQESIIIITVLSS---------ELNAHILEVPYKGGNMSMFFLLPPFASQDGVG 202
S ++I + T++ EL+A ++E+ Y+G SM +LP DG+
Sbjct: 188 RDFHVSKDKTIKVPTMIGKKDVRYADVPELDAKMIEMSYEGDQASMIIILP--NQVDGIT 245
Query: 203 DILAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGA 260
+ L KDP + R E N + VEI +PKF + +L LS++ +K LF+PGA
Sbjct: 246 ALEQKL-KDPKALSRAEERLYNTE-VEITLPKFKIETTTDLKEVLSNMNIKKLFTPGA 301
>pdb|4BB2|A Chain A, Crystal Structure Of Cleaved Corticosteroid-binding
Globulin In Complex With Progesterone
Length = 340
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 92/324 (28%), Positives = 158/324 (48%), Gaps = 48/324 (14%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+F F L L + KN+F+SP SI AL + +T A L Q L NL +
Sbjct: 14 DFAFSLYKHLVALSPKKNIFISPVSISMALAMLSLGTCGHTRAQLLQGLGF--NLTERSE 71
Query: 61 MNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTA----IFPSEIQSMDFGN 116
+++ + + L A +D+ L T N +F++ + + E +A + SE+ +M+F +
Sbjct: 72 TEIHQGFQHLHQLFAKSDTSLEMTMGNALFLDGSLELLESFSADIAHYYESEVLAMNFQD 131
Query: 117 EVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVL---------W-----LPSTQE-- 160
A+R INS+V +T+ I DL + ++S LVL W L ST+E
Sbjct: 132 WATASRQINSYVKNKTQGKIVDLFSG--LDSPAILVLVNYIFFKGTWTQPFDLASTREEN 189
Query: 161 ----------------SIIIITVLSSELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDI 204
S I + SEL ++++ Y GN ++FF+LP + + +
Sbjct: 190 FYVDETTVVKVPMMLQSSTISYLHDSELPCQLVQMNYV-GNGTVFFILP---DKGKMNTV 245
Query: 205 LAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSR 264
+AAL +D + R++ + V++ IPK +++ +L L ++G+ DLF+ A+ SR
Sbjct: 246 IAALSRD--TINRWSAGLTS-SQVDLYIPKVTISGVYDLGDVLEEMGIADLFTNQANFSR 302
Query: 265 LT-DSHIAFGDAVHKARLDLDEQG 287
+T D+ + VHKA L L+E+G
Sbjct: 303 ITQDAQLKSSKVVHKAVLQLNEEG 326
>pdb|1SEK|A Chain A, The Structure Of Active Serpin K From Manduca Sexta And A
Model For Serpin-Protease Complex Formation
Length = 378
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 89/298 (29%), Positives = 138/298 (46%), Gaps = 51/298 (17%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+FT + + + AN G+NV +S FS+ L S + L + L LP +
Sbjct: 17 QFTAQMFSEVVKANPGQNVVLSAFSVLPPLGQLALASVGESHDELLRALALPND------ 70
Query: 61 MNVYK--MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTAI----FPSEIQSMDF 114
NV K L +G+RA G+ +KI+V + + + A+ F SE+Q++DF
Sbjct: 71 -NVTKDVFADLNRGVRAV--KGVDLKMASKIYVAKGLELNDDFAAVSRDVFGSEVQNVDF 127
Query: 115 GNEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVL---------WLP--------- 156
VEAA AIN WV +T N IK+L+ ++ T VL W
Sbjct: 128 VKSVEAAGAINKWVEDQTNNRIKNLVDPDALDETTRSVLVNAIYFKGSWKDKFNKERTMD 187
Query: 157 -----STQESIIIITVLSS---------ELNAHILEVPYKGGNMSMFFLLPPFASQDGVG 202
S ++I + T++ EL+A ++E+ Y+G SM +LP DG+
Sbjct: 188 RDFHVSKDKTIKVPTMIGKKDVRYADVPELDAKMIEMSYEGDQASMIIILP--NQVDGIT 245
Query: 203 DILAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGA 260
+ L KDP + R E N + VEI +PKF + +L LS++ +K LF+PGA
Sbjct: 246 ALEQKL-KDPKALSRAEERLYNTE-VEIYLPKFKIETTTDLKEVLSNMNIKKLFTPGA 301
>pdb|2H4Q|A Chain A, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Cleaved Conformation
Length = 382
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 151/328 (46%), Gaps = 51/328 (15%)
Query: 2 FTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTM 61
FT DL LN N+ KN+F SP+SI AL Y + +T + +VL +
Sbjct: 52 FTVDLFNKLNETNRDKNIFFSPWSISSALALTYLAAKGSTAREMAEVLHFEQ------AE 105
Query: 62 NVYKMEKLIQGLRANADSGLTFTSTNKIFVNDK---IPVK-ECMTAIFPSEIQSMDFGNE 117
N++ K + + + S N+I+V +P + + +E Q ++F
Sbjct: 106 NIHSGFKELLTAFNKPRNNYSLRSANRIYVEKTYALLPTYLQLSKKYYKAEPQKVNFKTA 165
Query: 118 VEAARA-INSWVAQETKNNIKDLIATGQVNSRTNLVL---------WLPSTQESIIII-- 165
E +R IN+WV ++T++ IK+L+++ V + T L+L W Q I
Sbjct: 166 PEQSRKEINTWVEKQTESKIKNLLSSDDVKATTRLILVNAIYFKAEWEVKFQAEKTSIQP 225
Query: 166 ---------------------TVLSSELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDI 204
++ ++N ++E+PY +SMF LLP G
Sbjct: 226 FRLSKNKSKPVKMMYMRDTFPVLIMEKMNFKMIELPYVKRELSMFILLPDDIKDGTTG-- 283
Query: 205 LAALKKDPTSFKRFTE--DSQNLKP--VEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGA 260
L L+++ T ++R +E DS+ + V++ +PKFSL ++L TL ++G+ F+ A
Sbjct: 284 LEQLERELT-YERLSEWADSKMMTETLVDLHLPKFSLEDRIDLRDTLRNMGMTTAFTTNA 342
Query: 261 DLSRLTDSH-IAFGDAVHKARLDLDEQG 287
D +TD +A +H++ + +DE+G
Sbjct: 343 DFRGMTDKKDLAISKVIHQSFVAVDEKG 370
>pdb|4GA7|A Chain A, Crystal Structure Of Human Serpinb1 Mutant
pdb|4GA7|B Chain B, Crystal Structure Of Human Serpinb1 Mutant
Length = 389
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 105/385 (27%), Positives = 171/385 (44%), Gaps = 65/385 (16%)
Query: 2 FTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTM 61
F DL L+ N N+F+SPFSI A+ + + NT A L +
Sbjct: 21 FALDLFLALSENNPAGNIFISPFSISSAMAMVFLGTRGNTAAQLSKTFHFN--------- 71
Query: 62 NVYKMEKLIQGLRANAD---SGLTFTSTNKIF---VNDKIPVKECMT-AIFPSEIQSMDF 114
V ++ Q L A+ + + N+++ + +P T + +++ S+DF
Sbjct: 72 TVEEVHSRFQSLNADINKRGASYILKLANRLYGEKTYNFLPEFLVSTQKTYGADLASVDF 131
Query: 115 GNEVEAAR-AINSWVAQETKNNIKDLIATGQVNSRTNLVL---------W---------- 154
+ E AR IN WV +T+ I +L+A+G V++ T LVL W
Sbjct: 132 QHASEDARKTINQWVKGQTEGKIPELLASGMVDNMTKLVLVNAIYFKGNWKDKFMKEATT 191
Query: 155 -----LPSTQESIIIITVLSS--------ELNAHILEVPYKGGNMSMFFLLPPFASQDGV 201
L + + +L +LE+PY+G +SM LLP D +
Sbjct: 192 NAPFRLNKKDRKTVKMMYQKKKFAYGYIEDLKCRVLELPYQGEELSMVILLP-----DDI 246
Query: 202 GDILAALKK--DPTSFKRFTEDS--QNLKPVEI--AIPKFSLTQEMNLIPTLSDLGVKDL 255
D LKK + + ++ E + +NL +E+ ++P+F L + L L+ LGV+DL
Sbjct: 247 EDESTGLKKIEEQLTLEKLHEWTKPENLDFIEVNVSLPRFKLEESYTLNSDLARLGVQDL 306
Query: 256 F-SPGADLSRLTDSHIAF-GDAVHKARLDLDEQGXXXXXXXXVFA-FRSSRPLEPVRYEA 312
F S ADLS ++ + F VHK+ ++++E+G A F P E + A
Sbjct: 307 FNSSKADLSGMSGARDIFISKIVHKSFVEVNEEGTEAAAATAGIATFCMDDPEE--NFTA 364
Query: 313 NHPFLYFLVDKEIQSILFAGVFNEP 337
+HPFL+F+ SILF G F+ P
Sbjct: 365 DHPFLFFIRHNSSGSILFLGRFSSP 389
>pdb|2GD4|I Chain I, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
pdb|2GD4|C Chain C, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
Length = 443
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 93/372 (25%), Positives = 159/372 (42%), Gaps = 55/372 (14%)
Query: 11 NNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTMNVYKMEKLI 70
++ N N+F+SP SI A + +T L +V + +K + KL
Sbjct: 79 DSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQIHFFFAKLN 138
Query: 71 QGLRANADSGLTFTSTNKIFVNDKIPVKECMTAI----FPSEIQSMDFGNEVEAARA-IN 125
L A+ S N++F + + E I + +++Q +DF E +RA IN
Sbjct: 139 CRLYRKANKASKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAIN 198
Query: 126 SWVAQETKNNIKDLIATGQVNSRTNLVL---------WL----PSTQESIIIITVLSSEL 172
WV+ +T+ I D+I + +N T LVL W P +
Sbjct: 199 KWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESC 258
Query: 173 NA------------------HILEVPYKGGNMSMFFLLP-PFASQDGVGDILAALKKD-- 211
+A +LE+P+KG +++M +LP P S LA ++K+
Sbjct: 259 SASMMYQEGKFRYRRVAEGTQVLELPFKGDDITMVLILPKPEKS-------LAKVEKELT 311
Query: 212 PTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGAD----LSRLTD 267
P + + ++ + + V + +P+F + +L L D+G+ DLFSP A +
Sbjct: 312 PEVLQEWLDELEEMMLV-VHMPRFRIEDGFSLKEQLQDMGLVDLFSPAASALPGIVAEGR 370
Query: 268 SHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVR--YEANHPFLYFLVDKEI 325
+ DA HKA L+++E+G V + R L P R ++AN PFL F+ + +
Sbjct: 371 DDLYVSDAFHKAFLEVNEEGSEAAASTAVVI--AGRSLNPNRVTFKANRPFLVFIREVPL 428
Query: 326 QSILFAGVFNEP 337
+I+F G P
Sbjct: 429 NTIIFMGRVANP 440
>pdb|3DLW|A Chain A, Antichymotrypsin
Length = 411
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 105/381 (27%), Positives = 176/381 (46%), Gaps = 59/381 (15%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLR-LPENLDKLD 59
+F F L L KNV SP SI AL F+S L ++L+ L NL +
Sbjct: 43 DFAFSLYKQLVLKAPDKNVIFSPLSISTAL---AFLSLGAHNTTLTEILKGLKFNLTETS 99
Query: 60 TMNVYK-MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTA----IFPSEIQSMDF 114
+++ + L++ L ++D L + N +FV +++ + + T ++ SE + DF
Sbjct: 100 EAEIHQSFQHLLRTLNQSSDE-LQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDF 158
Query: 115 GNEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVL---------W-LP----STQE 160
+ A + IN +V T+ I DLI ++S+T +VL W +P T +
Sbjct: 159 QDSAAAKKLINDYVKNGTRGKITDLIK--DLDSQTMMVLVNYIFFKAKWEMPFDPQDTHQ 216
Query: 161 SIIIIT----VLSSELNAHILEVPY--------------KGGNMSMFFLLPPFASQDGVG 202
S ++ V+ ++ H L +PY GN S F+LP QD +
Sbjct: 217 SRFYLSKKKWVMVPMMSLHHLTIPYFRDEELSCTVVELKYTGNASALFILP---DQDKME 273
Query: 203 DILAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADL 262
++ A L P + KR+ + + + E+ +PKFS++++ NL L LG+++ F+ ADL
Sbjct: 274 EVEAMLL--PETLKRWRDSLEFREIGELYLPKFSISRDYNLNDILLQLGIEEAFTSKADL 331
Query: 263 SRLTDS-HIAFGDAVHKARLDLDEQGXXXXXXXXV-----FAFRSSRPLEPVRYEANHPF 316
S +T + ++A VHKA LD+ E+G V A +R + R+ N PF
Sbjct: 332 SGITGARNLAVSQVVHKAVLDVFEEGTEASGTTAVKITLLSALVETRTI--TRF--NRPF 387
Query: 317 LYFLVDKEIQSILFAGVFNEP 337
L +V + Q+I F P
Sbjct: 388 LMIIVPTDTQNIFFMSKVTNP 408
>pdb|1QMN|A Chain A, Alpha1-Antichymotrypsin Serpin In The Delta Conformation
(Partial Loop Insertion)
Length = 401
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 106/381 (27%), Positives = 177/381 (46%), Gaps = 59/381 (15%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLR-LPENLDKLD 59
+F F L L KNV SP SI AL F+S L ++L+ L NL +
Sbjct: 33 DFAFSLYKQLVLKAPDKNVIFSPPSISTALA---FLSLGAHNTTLTEILKGLKFNLTETS 89
Query: 60 TMNVYK-MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTA----IFPSEIQSMDF 114
+++ + L++ L ++D L + N +FV +++ + + T ++ SE + DF
Sbjct: 90 EAEIHQSFQHLLRTLNQSSDE-LQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDF 148
Query: 115 GNEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVL---------W-LP----STQE 160
+ A + IN +V T+ I DLI ++S+T +VL W +P T +
Sbjct: 149 QDSAAAKKLINDYVKNGTRGKITDLIK--DLDSQTMMVLVNYIFFKAKWEMPFDPQDTHQ 206
Query: 161 SIIIIT----VLSSELNAHILEVPY--------------KGGNMSMFFLLPPFASQDGVG 202
S ++ V+ ++ H L +PY GN S F+LP QD +
Sbjct: 207 SRFYLSKKKWVMVPMMSLHHLTIPYFRDEELSCTVVELKYTGNASALFILP---DQDKME 263
Query: 203 DILAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADL 262
++ A L P + KR+ + + + E+ +PKFS++++ NL L LG+++ F+ ADL
Sbjct: 264 EVEAMLL--PETLKRWRDSLEFREIGELYLPKFSISRDYNLNDILLQLGIEEAFTSKADL 321
Query: 263 SRLTDS-HIAFGDAVHKARLDLDEQGXXXXXXXXV-----FAFRSSRPLEPVRYEANHPF 316
S +T + ++A VHKA LD+ E+G V A +R + VR+ N PF
Sbjct: 322 SGITGARNLAVSQVVHKAVLDVFEEGTEASAATAVKITLLSALVETRTI--VRF--NRPF 377
Query: 317 LYFLVDKEIQSILFAGVFNEP 337
L +V + Q+I F P
Sbjct: 378 LMIIVPTDTQNIFFMSKVTNP 398
>pdb|3NDA|A Chain A, Crystal Structure Of Serpin From Tick Ixodes Ricinus
pdb|3NDA|B Chain B, Crystal Structure Of Serpin From Tick Ixodes Ricinus
Length = 377
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 90/360 (25%), Positives = 154/360 (42%), Gaps = 51/360 (14%)
Query: 17 KNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPE-NLDKLDTMNVY--KMEKLIQGL 73
KNVF SP+S+ A+ A+ + T+ L Q L + +L ++ Y E+L
Sbjct: 28 KNVFFSPYSVSTAMGMAFAGARGQTQQELSQGLGFSDVDLTDAGVLDAYTHHTERL---- 83
Query: 74 RANADSGLTFTSTNKIFVNDKIPV----KECMTAIFPSEIQSMDFGNEVEAA-RAINSWV 128
+ S T N + + + + + + F +E+ +DF E +AA +N+WV
Sbjct: 84 -KSTPSNSTLDVANAAAIQRTLALLNSYESALQSSFGAELHKVDFAGEPQAAVDFVNNWV 142
Query: 129 AQETKNNIKDLIATGQVNSRTNLVL---------W-----------------------LP 156
++T + I+ L ++ T LVL W +
Sbjct: 143 KRKTHDKIEKLF-NEPLDPDTLLVLLNAIYFKGEWNTAFVKEHTEKRQFFNGGVTPVEVD 201
Query: 157 STQESIIIITVLSSELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDILAALKKDPTSFK 216
+ + I +L ++E+PY+G + +M LLP GV + L D F+
Sbjct: 202 TMRLEARIKYRFFDDLQVEVVELPYRGLDYTMAILLP--KENTGVEGLKQNLTID--RFQ 257
Query: 217 RFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRLTDSHIAFGDAV 276
+ D + K + + +PKF L + +L L LG+K +F GADLS + D +
Sbjct: 258 NYLSDLRERK-ITVLLPKFKLETKYSLKAPLQSLGIKQIFESGADLSGINDGSLRVSAVE 316
Query: 277 HKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVRYEANHPFLYFLVDKEIQSILFAGVFNE 336
HKA ++++E+G V S EPV + +HPFL+F+ + I F G N+
Sbjct: 317 HKAVVEVNEEGTVAAATTGVVIVPYSLGPEPVVFRVDHPFLFFIRNTRTDDIFFVGQVNK 376
>pdb|2H4P|A Chain A, Crystal Structure Of Wildtype Ment In The Cleaved
Conformation
Length = 394
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 157/351 (44%), Gaps = 69/351 (19%)
Query: 2 FTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTM 61
FT DL LN N+ KN+F SP+SI AL Y + +T + +VL E + + ++
Sbjct: 36 FTVDLFNKLNETNRDKNIFFSPWSISSALALTYLAAKGSTAREMAEVLHFTEAV-RAESS 94
Query: 62 NVYKMEKLIQGLR---------ANADSGL--------------TFTSTNKIFVNDK---I 95
+V + + R N SG + S N+I+V +
Sbjct: 95 SVARPSRGRPKRRRMDPEHEQAENIHSGFKELLTAFNKPRNNYSLRSANRIYVEKTYALL 154
Query: 96 PVK-ECMTAIFPSEIQSMDFGNEVEAARA-INSWVAQETKNNIKDLIATGQVNSRTNLVL 153
P + + +E Q ++F E +R IN+WV ++T++ IK+L+++ V + T L+L
Sbjct: 155 PTYLQLSKKYYKAEPQKVNFKTAPEQSRKEINTWVEKQTESKIKNLLSSDDVKATTRLIL 214
Query: 154 ---------WLPSTQESIIII-----------------------TVLSSELNAHILEVPY 181
W Q I ++ ++N ++E+PY
Sbjct: 215 VNAIYFKAEWEVKFQAEKTSIQPFRLSKNKSKPVKMMYMRDTFPVLIMEKMNFKMIELPY 274
Query: 182 KGGNMSMFFLLPPFASQDGVGDILAALKKDPTSFKRFTE--DSQNLKP--VEIAIPKFSL 237
+SMF LLP G L L+++ T ++R +E DS+ + V++ +PKFSL
Sbjct: 275 VKRELSMFILLPDDIKDGTTG--LEQLERELT-YERLSEWADSKMMTETLVDLHLPKFSL 331
Query: 238 TQEMNLIPTLSDLGVKDLFSPGADLSRLTDSH-IAFGDAVHKARLDLDEQG 287
++L TL ++G+ F+ AD +TD +A +H++ + +DE+G
Sbjct: 332 EDRIDLRDTLRNMGMTTAFTTNADFRGMTDKKDLAISKVIHQSFVAVDEKG 382
>pdb|3KCG|I Chain I, Crystal Structure Of The Antithrombin-Factor Ixa-
Pentasaccharide Complex
Length = 432
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 94/374 (25%), Positives = 161/374 (43%), Gaps = 59/374 (15%)
Query: 11 NNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTMNVYKMEKLI 70
++ N N+F+SP SI A + +T L +V + +K + KL
Sbjct: 68 DSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQIHFFFAKLN 127
Query: 71 QGLRANADSGLTFTSTNKIFVNDKIPVKECMTAI----FPSEIQSMDFGNEVEAARA-IN 125
L A+ S N++F + + E I + +++Q +DF E +RA IN
Sbjct: 128 CRLYRKANKASKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAIN 187
Query: 126 SWVAQETKNNIKDLIATGQVNSRTNLVL---------WL----PSTQESIIIITVLSSEL 172
WV+ +T+ I D+I + +N T LVL W P +
Sbjct: 188 KWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESC 247
Query: 173 NA------------------HILEVPYKGGNMSMFFLLP-PFASQDGVGDILAALKKD-- 211
+A +LE+P+KG +++M +LP P S LA ++K+
Sbjct: 248 SASMMYQEGKFRYRRVAEGTQVLELPFKGDDITMVLILPKPEKS-------LAKVEKELT 300
Query: 212 PTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFS------PGADLSRL 265
P + + ++ + + V + +P+F + +L L D+G+ DLFS PG
Sbjct: 301 PEVLQEWLDELEEMMLV-VHMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSKLPGIVAEGR 359
Query: 266 TDSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVR--YEANHPFLYFLVDK 323
D +++ DA HKA L+++E+G V + R L P R ++AN PFL F+ +
Sbjct: 360 DDLYVS--DAFHKAFLEVNEEGSEAAASTAVVI--AGRSLNPNRVTFKANRPFLVFIREV 415
Query: 324 EIQSILFAGVFNEP 337
+ +I+F G P
Sbjct: 416 PLNTIIFMGRVANP 429
>pdb|1LQ8|A Chain A, Crystal Structure Of Cleaved Protein C Inhibitor
pdb|1LQ8|C Chain C, Crystal Structure Of Cleaved Protein C Inhibitor
pdb|1LQ8|E Chain E, Crystal Structure Of Cleaved Protein C Inhibitor
pdb|1LQ8|G Chain G, Crystal Structure Of Cleaved Protein C Inhibitor
Length = 346
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 89/341 (26%), Positives = 160/341 (46%), Gaps = 51/341 (14%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+FTFDL L +A +N+F SP SI +L + +T+ + + L L NL K
Sbjct: 18 DFTFDLYRALASAAPSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGL--NLQKSSE 75
Query: 61 MNVYK-MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKE----CMTAIFPSEIQSMDFG 115
+++ ++L+Q L D G + N +F + + +++ M ++ ++ +F
Sbjct: 76 KELHRGFQQLLQELNQPRD-GFQLSLGNALFTDLVVDLQDTFVSAMKTLYLADTFPTNFR 134
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLV-------LWLPS----------- 157
+ A + IN +VA++TK I DL+ N+ +V W S
Sbjct: 135 DSAGAMKQINDYVAKQTKGKIVDLLKNLDSNAVVIMVNYIFFKAKWETSFNHKGTQEQDF 194
Query: 158 --TQESIIIITVLSSE----------LNAHILEVPYKGGNMSMFFLLPPFASQDGVGDIL 205
T E+++ + ++S E L+ ++ VPY+G N + F+LP V + L
Sbjct: 195 YVTSETVVRVPMMSREDQYHYLLDRNLSCRVVGVPYQG-NATALFILPSEGKMQQVENGL 253
Query: 206 A--ALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLS 263
+ L+K FK+ + +E+ +PKFS+ L L LG+ ++F+ ADLS
Sbjct: 254 SEKTLRKWLKMFKK--------RQLELYLPKFSIEGSYQLEKVLPSLGISNVFTSHADLS 305
Query: 264 RLTD-SHIAFGDAVHKARLDLDEQGXXXXXXX-XVFAFRSS 302
+++ S+I + VHKA +++DE G +F FRS+
Sbjct: 306 GISNHSNIQVSEMVHKAVVEVDESGTRAAAATGTIFTFRSA 346
>pdb|1ATH|A Chain A, The Intact And Cleaved Human Antithrombin Iii Complex As A
Model For Serpin-Proteinase Interactions
pdb|1ANT|L Chain L, Biological Implications Of A 3 Angstroms Structure Of
Dimeric Antithrombin
pdb|1ANT|I Chain I, Biological Implications Of A 3 Angstroms Structure Of
Dimeric Antithrombin
pdb|2ANT|L Chain L, The 2.6 A Structure Of Antithrombin Indicates A
Conformational Change At The Heparin Binding Site
pdb|2ANT|I Chain I, The 2.6 A Structure Of Antithrombin Indicates A
Conformational Change At The Heparin Binding Site
pdb|1AZX|I Chain I, AntithrombinPENTASACCHARIDE COMPLEX
pdb|1AZX|L Chain L, AntithrombinPENTASACCHARIDE COMPLEX
pdb|1BR8|L Chain L, Implications For Function And Therapy Of A 2.9a Structure
Of Binary-Complexed Antithrombin
pdb|1BR8|I Chain I, Implications For Function And Therapy Of A 2.9a Structure
Of Binary-Complexed Antithrombin
pdb|1E03|L Chain L, Plasma Alpha Antithrombin-Iii And Pentasaccharide
pdb|1E03|I Chain I, Plasma Alpha Antithrombin-Iii And Pentasaccharide
pdb|1E04|L Chain L, Plasma Beta Antithrombin-Iii
pdb|1E04|I Chain I, Plasma Beta Antithrombin-Iii
pdb|1E05|L Chain L, Plasma Alpha Antithrombin-Iii
pdb|1E05|I Chain I, Plasma Alpha Antithrombin-Iii
pdb|1DZG|L Chain L, N135q-S380c-Antithrombin-Iii
pdb|1DZH|L Chain L, P14-Fluorescein-N135q-S380c-Antithrombin-Iii
pdb|1JVQ|L Chain L, Crystal Structure At 2.6a Of The Ternary Complex Between
Antithrombin, A P14-P8 Reactive Loop Peptide, And An
Exogenous Tetrapeptide
pdb|1JVQ|I Chain I, Crystal Structure At 2.6a Of The Ternary Complex Between
Antithrombin, A P14-P8 Reactive Loop Peptide, And An
Exogenous Tetrapeptide
pdb|1LK6|L Chain L, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
pdb|1LK6|I Chain I, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
pdb|1NQ9|I Chain I, Crystal Structure Of Antithrombin In The
Pentasaccharide-Bound Intermediate State
pdb|1NQ9|L Chain L, Crystal Structure Of Antithrombin In The
Pentasaccharide-Bound Intermediate State
pdb|1OYH|L Chain L, Crystal Structure Of P13 Alanine Variant Of Antithrombin
pdb|1SR5|A Chain A, Antithrombin-Anhydrothrombin-Heparin Ternary Complex
Structure
pdb|1R1L|L Chain L, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
(Formyl-Norleucine-Lf)
pdb|1R1L|I Chain I, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
(Formyl-Norleucine-Lf)
pdb|2BEH|L Chain L, Crystal Structure Of Antithrombin Variant
S137a/v317c/t401c With Plasma Latent Antithrombin
pdb|2HIJ|L Chain L, Crystal Structure Of P14 Alanine Variant Of Antithrombin
pdb|1ATH|B Chain B, The Intact And Cleaved Human Antithrombin Iii Complex As A
Model For Serpin-Proteinase Interactions
pdb|2ZNH|A Chain A, Crystal Structure Of A Domain-Swapped Serpin Dimer
pdb|2ZNH|B Chain B, Crystal Structure Of A Domain-Swapped Serpin Dimer
pdb|3EVJ|I Chain I, Intermediate Structure Of Antithrombin Bound To The
Natural Pentasaccharide
pdb|3EVJ|L Chain L, Intermediate Structure Of Antithrombin Bound To The
Natural Pentasaccharide
pdb|4EB1|L Chain L, Hyperstable In-Frame Insertion Variant Of Antithrombin
Length = 432
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 94/374 (25%), Positives = 161/374 (43%), Gaps = 59/374 (15%)
Query: 11 NNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTMNVYKMEKLI 70
++ N N+F+SP SI A + +T L +V + +K + KL
Sbjct: 68 DSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQIHFFFAKLN 127
Query: 71 QGLRANADSGLTFTSTNKIFVNDKIPVKECMTAI----FPSEIQSMDFGNEVEAARA-IN 125
L A+ S N++F + + E I + +++Q +DF E +RA IN
Sbjct: 128 CRLYRKANKSSKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAIN 187
Query: 126 SWVAQETKNNIKDLIATGQVNSRTNLVL---------WL----PSTQESIIIITVLSSEL 172
WV+ +T+ I D+I + +N T LVL W P +
Sbjct: 188 KWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESC 247
Query: 173 NA------------------HILEVPYKGGNMSMFFLLP-PFASQDGVGDILAALKKD-- 211
+A +LE+P+KG +++M +LP P S LA ++K+
Sbjct: 248 SASMMYQEGKFRYRRVAEGTQVLELPFKGDDITMVLILPKPEKS-------LAKVEKELT 300
Query: 212 PTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFS------PGADLSRL 265
P + + ++ + + V + +P+F + +L L D+G+ DLFS PG
Sbjct: 301 PEVLQEWLDELEEMMLV-VHMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSKLPGIVAEGR 359
Query: 266 TDSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVR--YEANHPFLYFLVDK 323
D +++ DA HKA L+++E+G V + R L P R ++AN PFL F+ +
Sbjct: 360 DDLYVS--DAFHKAFLEVNEEGSEAAASTAVVI--AGRSLNPNRVTFKANRPFLVFIREV 415
Query: 324 EIQSILFAGVFNEP 337
+ +I+F G P
Sbjct: 416 PLNTIIFMGRVANP 429
>pdb|2B4X|L Chain L, Crystal Structure Of Antithrombin-Iii
Length = 427
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 94/374 (25%), Positives = 161/374 (43%), Gaps = 59/374 (15%)
Query: 11 NNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTMNVYKMEKLI 70
++ N N+F+SP SI A + +T L +V + +K + KL
Sbjct: 64 DSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQIHFFFAKLN 123
Query: 71 QGLRANADSGLTFTSTNKIFVNDKIPVKECMTAI----FPSEIQSMDFGNEVEAARA-IN 125
L A+ S N++F + + E I + +++Q +DF E +RA IN
Sbjct: 124 CRLYRKANKSSKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAIN 183
Query: 126 SWVAQETKNNIKDLIATGQVNSRTNLVL---------WL----PSTQESIIIITVLSSEL 172
WV+ +T+ I D+I + +N T LVL W P +
Sbjct: 184 KWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESC 243
Query: 173 NA------------------HILEVPYKGGNMSMFFLLP-PFASQDGVGDILAALKKD-- 211
+A +LE+P+KG +++M +LP P S LA ++K+
Sbjct: 244 SASMMYQEGKFRYRRVAEGTQVLELPFKGDDITMVLILPKPEKS-------LAKVEKELT 296
Query: 212 PTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFS------PGADLSRL 265
P + + ++ + + V + +P+F + +L L D+G+ DLFS PG
Sbjct: 297 PEVLQEWLDELEEMMLV-VHMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSKLPGIVAEGR 355
Query: 266 TDSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVR--YEANHPFLYFLVDK 323
D +++ DA HKA L+++E+G V + R L P R ++AN PFL F+ +
Sbjct: 356 DDLYVS--DAFHKAFLEVNEEGSEAAASTAVVI--AGRSLNPNRVTFKANRPFLVFIREV 411
Query: 324 EIQSILFAGVFNEP 337
+ +I+F G P
Sbjct: 412 PLNTIIFMGRVANP 425
>pdb|1DZG|I Chain I, N135q-S380c-Antithrombin-Iii
Length = 432
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 94/374 (25%), Positives = 160/374 (42%), Gaps = 59/374 (15%)
Query: 11 NNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTMNVYKMEKLI 70
++ N N+F+SP SI A + +T L +V + +K + KL
Sbjct: 68 DSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQIHFFFAKLN 127
Query: 71 QGLRANADSGLTFTSTNKIFVNDKIPVKECMTAI----FPSEIQSMDFGNEVEAARA-IN 125
L A S N++F + + E I + +++Q +DF E +RA IN
Sbjct: 128 CRLYRKAQKSSKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAIN 187
Query: 126 SWVAQETKNNIKDLIATGQVNSRTNLVL---------WL----PSTQESIIIITVLSSEL 172
WV+ +T+ I D+I + +N T LVL W P +
Sbjct: 188 KWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESC 247
Query: 173 NA------------------HILEVPYKGGNMSMFFLLP-PFASQDGVGDILAALKKD-- 211
+A +LE+P+KG +++M +LP P S LA ++K+
Sbjct: 248 SASMMYQEGKFRYRRVAEGTQVLELPFKGDDITMVLILPKPEKS-------LAKVEKELT 300
Query: 212 PTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFS------PGADLSRL 265
P + + ++ + + V + +P+F + +L L D+G+ DLFS PG
Sbjct: 301 PEVLQEWLDELEEMMLV-VHMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSKLPGIVAEGR 359
Query: 266 TDSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVR--YEANHPFLYFLVDK 323
D +++ DA HKA L+++E+G V + R L P R ++AN PFL F+ +
Sbjct: 360 DDLYVS--DAFHKAFLEVNEEGCEAAASTAVVI--AGRSLNPNRVTFKANRPFLVFIREV 415
Query: 324 EIQSILFAGVFNEP 337
+ +I+F G P
Sbjct: 416 PLNTIIFMGRVANP 429
>pdb|1DZH|I Chain I, P14-Fluorescein-N135q-S380c-Antithrombin-Iii
Length = 432
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 95/374 (25%), Positives = 161/374 (43%), Gaps = 59/374 (15%)
Query: 11 NNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTMNVYKMEKLI 70
++ N N+F+SP SI A + +T L +V + +K + KL
Sbjct: 68 DSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQIHFFFAKLN 127
Query: 71 QGLRANADSGLTFTSTNKIFVNDKIPVKECMTAI----FPSEIQSMDFGNEVEAARA-IN 125
L A S N++F + + E I + +++Q +DF E +RA IN
Sbjct: 128 CRLYRKAQKSSKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAIN 187
Query: 126 SWVAQETKNNIKDLIATGQVNSRTNLVL---------WL----PSTQESIIIITVLSSEL 172
WV+ +T+ I D+I + +N T LVL W P +
Sbjct: 188 KWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESC 247
Query: 173 NA------------------HILEVPYKGGNMSMFFLLP-PFASQDGVGDILAALKKD-- 211
+A +LE+P+KG +++M +LP P S LA ++K+
Sbjct: 248 SASMMYQEGKFRYRRVAEGTQVLELPFKGDDITMVLILPKPEKS-------LAKVEKELT 300
Query: 212 PTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFS------PGADLSRL 265
P + + ++ + + V + +P+F + +L L D+G+ DLFS PG
Sbjct: 301 PEVLQEWLDELEEMMLV-VHMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSKLPGIVAEGR 359
Query: 266 TDSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVR--YEANHPFLYFLVDK 323
D +++ DA HKA L+++E+G V + R L P R ++AN PFL F+ +
Sbjct: 360 DDLYVS--DAFHKAFLEVNEEGXEAAASTAVVI--AGRSLNPNRVTFKANRPFLVFIREV 415
Query: 324 EIQSILFAGVFNEP 337
+ +I+F G P
Sbjct: 416 PLNTIIFMGRVANP 429
>pdb|2HIJ|I Chain I, Crystal Structure Of P14 Alanine Variant Of Antithrombin
Length = 432
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 94/374 (25%), Positives = 160/374 (42%), Gaps = 59/374 (15%)
Query: 11 NNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTMNVYKMEKLI 70
++ N N+F+SP SI A + +T L +V + +K + KL
Sbjct: 68 DSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQIHFFFAKLN 127
Query: 71 QGLRANADSGLTFTSTNKIFVNDKIPVKECMTAI----FPSEIQSMDFGNEVEAARA-IN 125
L A S N++F + + E I + +++Q +DF E +RA IN
Sbjct: 128 CRLYRKAAKSSKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAIN 187
Query: 126 SWVAQETKNNIKDLIATGQVNSRTNLVL---------WL----PSTQESIIIITVLSSEL 172
WV+ +T+ I D+I + +N T LVL W P +
Sbjct: 188 KWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESC 247
Query: 173 NA------------------HILEVPYKGGNMSMFFLLP-PFASQDGVGDILAALKKD-- 211
+A +LE+P+KG +++M +LP P S LA ++K+
Sbjct: 248 SASMMYQEGKFRYRRVAEGTQVLELPFKGDDITMVLILPKPEKS-------LAKVEKELT 300
Query: 212 PTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFS------PGADLSRL 265
P + + ++ + + V + +P+F + +L L D+G+ DLFS PG
Sbjct: 301 PEVLQEWLDELEEMMLV-VHMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSKLPGIVAEGR 359
Query: 266 TDSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVR--YEANHPFLYFLVDK 323
D +++ DA HKA L+++E+G V + R L P R ++AN PFL F+ +
Sbjct: 360 DDLYVS--DAFHKAFLEVNEEGAEAAASTAVVI--AGRSLNPNRVTFKANRPFLVFIREV 415
Query: 324 EIQSILFAGVFNEP 337
+ +I+F G P
Sbjct: 416 PLNTIIFMGRVANP 429
>pdb|1TB6|I Chain I, 2.5a Crystal Structure Of The
Antithrombin-Thrombin-Heparin Ternary Complex
pdb|1T1F|A Chain A, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|1T1F|B Chain B, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|1T1F|C Chain C, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|2BEH|I Chain I, Crystal Structure Of Antithrombin Variant
S137a/v317c/t401c With Plasma Latent Antithrombin
pdb|2B5T|I Chain I, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
Length = 432
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 93/374 (24%), Positives = 161/374 (43%), Gaps = 59/374 (15%)
Query: 11 NNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTMNVYKMEKLI 70
++ N N+F+SP SI A + +T L +V + +K + KL
Sbjct: 68 DSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQIHFFFAKLN 127
Query: 71 QGLRANADSGLTFTSTNKIFVNDKIPVKECMTAI----FPSEIQSMDFGNEVEAARA-IN 125
L A+ S N++F + + E I + +++Q +DF E +RA IN
Sbjct: 128 CRLYRKANKASKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAIN 187
Query: 126 SWVAQETKNNIKDLIATGQVNSRTNLVL---------WL----PSTQESIIIITVLSSEL 172
WV+ +T+ I D+I + +N T LVL W P +
Sbjct: 188 KWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESC 247
Query: 173 NA------------------HILEVPYKGGNMSMFFLLP-PFASQDGVGDILAALKKD-- 211
+A +LE+P+KG +++M +LP P S LA ++K+
Sbjct: 248 SASMMYQEGKFRYRRVAEGTQVLELPFKGDDITMVLILPKPEKS-------LAKVEKELT 300
Query: 212 PTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFS------PGADLSRL 265
P + + ++ + + + + +P+F + +L L D+G+ DLFS PG
Sbjct: 301 PEVLQEWLDELEEMM-LCVHMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSKLPGIVAEGR 359
Query: 266 TDSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVR--YEANHPFLYFLVDK 323
D +++ DA HKA L+++E+G V + R L P R ++AN PFL F+ +
Sbjct: 360 DDLYVS--DAFHKAFLEVNEEGSEAAASTAVVI--AGRSLNPNRVCFKANRPFLVFIREV 415
Query: 324 EIQSILFAGVFNEP 337
+ +I+F G P
Sbjct: 416 PLNTIIFMGRVANP 429
>pdb|2B4X|I Chain I, Crystal Structure Of Antithrombin-Iii
Length = 427
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 94/374 (25%), Positives = 160/374 (42%), Gaps = 59/374 (15%)
Query: 11 NNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTMNVYKMEKLI 70
++ N N+F+SP SI A + +T L +V + +K + KL
Sbjct: 64 DSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQIHFFFAKLN 123
Query: 71 QGLRANADSGLTFTSTNKIFVNDKIPVKECMTAI----FPSEIQSMDFGNEVEAARA-IN 125
L A S N++F + + E I + +++Q +DF E +RA IN
Sbjct: 124 CRLYRKAAKSSKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAIN 183
Query: 126 SWVAQETKNNIKDLIATGQVNSRTNLVL---------WL----PSTQESIIIITVLSSEL 172
WV+ +T+ I D+I + +N T LVL W P +
Sbjct: 184 KWVSNKTEGRITDVIPSEAINELTVLVLVNTILFKGLWKSKFSPENTRKELFYKADGESC 243
Query: 173 NA------------------HILEVPYKGGNMSMFFLLP-PFASQDGVGDILAALKKD-- 211
+A +LE+P+KG +++M +LP P S LA ++K+
Sbjct: 244 SASMMYQEGKFRYRRVAEGTQVLELPFKGDDITMVLILPKPEKS-------LAKVEKELT 296
Query: 212 PTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFS------PGADLSRL 265
P + + ++ + + V + +P+F + +L L D+G+ DLFS PG
Sbjct: 297 PEVLQEWLDELEEMMLV-VHMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSKLPGIVAEGR 355
Query: 266 TDSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVR--YEANHPFLYFLVDK 323
D +++ DA HKA L+++E+G V + R L P R ++AN PFL F+ +
Sbjct: 356 DDLYVS--DAFHKAFLEVNEEGSEAAASTAVVI--AGRSLNPNRVTFKANRPFLVFIREV 411
Query: 324 EIQSILFAGVFNEP 337
+ +I+F G P
Sbjct: 412 PLNTIIFMGRVANP 425
>pdb|1ATT|A Chain A, Crystal Structure Of Cleaved Bovine Antithrombin Iii At
3.2 Angstroms Resolution
pdb|1ATT|B Chain B, Crystal Structure Of Cleaved Bovine Antithrombin Iii At
3.2 Angstroms Resolution
Length = 429
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/371 (23%), Positives = 157/371 (42%), Gaps = 53/371 (14%)
Query: 11 NNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTMNVYKMEKLI 70
++ N N+F+SP SI A + NT L +V + +K + KL
Sbjct: 65 DSKNNNDNIFLSPLSISTAFAMTKLGACNNTLTQLMEVFKFDTISEKTSDQIHFFFAKLN 124
Query: 71 QGLRANADSGLTFTSTNKIFVNDKIPVKECMT----AIFPSEIQSMDFGNEVEAAR-AIN 125
L A+ S N++F + I E ++ +++Q +DF E +R IN
Sbjct: 125 CRLYRKANKSSELVSANRLFGDKSITFNETYQDISEVVYGAKLQPLDFKGNAEQSRLTIN 184
Query: 126 SWVAQETKNNIKDLIATGQVNSRTNLVL---------W--------------LPSTQESI 162
W++ +T+ I D+I +N T LVL W + ES
Sbjct: 185 QWISNKTEGRITDVIPPQAINEFTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESC 244
Query: 163 IIITVLSSEL--------NAHILEVPYKGGNMSMFFLLPPFASQDGVGDILAALKKD--P 212
++ + + +LE+P+KG +++M +LP LA ++++ P
Sbjct: 245 SVLMMYQESKFRYRRVAESTQVLELPFKGDDITMVLILPKLEK------TLAKVEQELTP 298
Query: 213 TSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRL------T 266
+ + ++ V + +P+F + ++ L D+G++DLFSP + SRL
Sbjct: 299 DMLQEWLDELTETLLV-VHMPRFRIEDSFSVKEQLQDMGLEDLFSP--EKSRLPGIVAEG 355
Query: 267 DSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVRYEANHPFLYFLVDKEIQ 326
S + DA HKA L+++E+G + S + V ++AN PFL + + +
Sbjct: 356 RSDLYVSDAFHKAFLEVNEEGSEAAASTVISIAGRSLNSDRVTFKANRPFLVLIREVALN 415
Query: 327 SILFAGVFNEP 337
+I+F G P
Sbjct: 416 TIIFMGRVANP 426
>pdb|4EB1|I Chain I, Hyperstable In-Frame Insertion Variant Of Antithrombin
Length = 440
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 95/382 (24%), Positives = 163/382 (42%), Gaps = 67/382 (17%)
Query: 11 NNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTMNVYKMEKLI 70
++ N N+F+SP SI A + +T L +V + +K + KL
Sbjct: 68 DSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQIHFFFAKLN 127
Query: 71 QGLRANADSGLTFTSTNKIFVNDKIPVKECMTAI----FPSEIQSMDFGNEVEAARA-IN 125
L A+ S N++F + + E I + +++Q +DF E +RA IN
Sbjct: 128 CRLYRKANKASKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAIN 187
Query: 126 SWVAQETKNNIKDLIATGQ------VNSRTNLVLWL---------------PSTQESIII 164
WV+ +T+ I D+I + VN+RT+ VL L P +
Sbjct: 188 KWVSNKTEGRITDVIPSEAINVLVLVNTRTSTVLVLVNTIYFKGLWKSKFSPENTRKELF 247
Query: 165 ITVLSSELNA------------------HILEVPYKGGNMSMFFLLP-PFASQDGVGDIL 205
+A +LE+P+KG +++M +LP P S L
Sbjct: 248 YKADGESCSASMMYQEGKFRYRRVAEGTQVLELPFKGDDITMVLILPKPEKS-------L 300
Query: 206 AALKKD--PTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFS------ 257
A ++K+ P + + ++ + + V + +P+F + +L L D+G+ DLFS
Sbjct: 301 AKVEKELTPEVLQEWLDELEEMMLV-VHMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSKL 359
Query: 258 PGADLSRLTDSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVR--YEANHP 315
PG D +++ DA HKA L+++E+G V + R L P R ++AN P
Sbjct: 360 PGIVAEGRDDLYVS--DAFHKAFLEVNEEGSEAAASTAVVI--AGRSLNPNRVTFKANRP 415
Query: 316 FLYFLVDKEIQSILFAGVFNEP 337
FL F+ + + +I+F G P
Sbjct: 416 FLVFIREVPLNTIIFMGRVANP 437
>pdb|3DY0|A Chain A, Crystal Structure Of Cleaved Pci Bound To Heparin
Length = 336
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 154/325 (47%), Gaps = 50/325 (15%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+FTFDL L +A +N+F SP SI +L + +T+ + + L L NL K
Sbjct: 11 DFTFDLYRALASAAPSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGL--NLQKSSE 68
Query: 61 MNVYK-MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKE----CMTAIFPSEIQSMDFG 115
+++ ++L+Q L D G + N +F + + +++ M ++ ++ +F
Sbjct: 69 KELHRGFQQLLQELNQPRD-GFQLSLGNALFTDLVVDLQDTFVSAMKTLYLADTFPTNFR 127
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLV-------LWLPS----------- 157
+ A + IN +VA++TK I DL+ N+ +V W S
Sbjct: 128 DSAGAMKQINDYVAKQTKGKIVDLLKNLDSNAVVIMVNYIFFKAKWETSFNHKGTQEQDF 187
Query: 158 --TQESIIIITVLSSE----------LNAHILEVPYKGGNMSMFFLLPPFASQDGVGDIL 205
T E+++ + ++S E L+ ++ VPY+G N + F+LP V + L
Sbjct: 188 YVTSETVVRVPMMSREDQYHYLLDRNLSCRVVGVPYQG-NATALFILPSEGKMQQVENGL 246
Query: 206 A--ALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLS 263
+ L+K FK+ + +E+ +PKFS+ L L LG+ ++F+ ADLS
Sbjct: 247 SEKTLRKWLKMFKK--------RQLELYLPKFSIEGSYQLEKVLPSLGISNVFTSHADLS 298
Query: 264 RLTD-SHIAFGDAVHKARLDLDEQG 287
+++ S+I + VHKA +++DE G
Sbjct: 299 GISNHSNIQVSEMVHKAVVEVDESG 323
>pdb|1OYH|I Chain I, Crystal Structure Of P13 Alanine Variant Of Antithrombin
Length = 432
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 94/374 (25%), Positives = 161/374 (43%), Gaps = 59/374 (15%)
Query: 11 NNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTMNVYKMEKLI 70
++ N N+F+SP SI A + +T L +V + +K + KL
Sbjct: 68 DSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQIHFFFAKLN 127
Query: 71 QGLRANADSGLTFTSTNKIFVNDKIPVKECMTAI----FPSEIQSMDFGNEVEAARA-IN 125
L A+ S N++F + + E I + +++Q +DF E +RA IN
Sbjct: 128 CRLYRKANKASKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAIN 187
Query: 126 SWVAQETKNNIKDLIATGQVNSRTNLVL---------WL----PSTQESIIIITVLSSEL 172
WV+ +T+ I D+I + +N T LVL W P +
Sbjct: 188 KWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESC 247
Query: 173 NA------------------HILEVPYKGGNMSMFFLLP-PFASQDGVGDILAALKKD-- 211
+A +LE+P+KG +++M +LP P S LA ++K+
Sbjct: 248 SASMMYQEGKFRYRRVAEGTQVLELPFKGDDITMVLILPKPEKS-------LAKVEKELT 300
Query: 212 PTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFS------PGADLSRL 265
P + + ++ + + V + +P+F + +L L D+G+ DLFS PG
Sbjct: 301 PEVLQEWLDELEEMMLV-VHMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSKLPGIVAEGR 359
Query: 266 TDSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVR--YEANHPFLYFLVDK 323
D +++ DA HKA L+++E+G V + R L P R ++AN PFL F+ +
Sbjct: 360 DDLYVS--DAFHKAFLEVNEEGSAAAASTAVVI--AGRSLNPNRVTFKANRPFLVFIREV 415
Query: 324 EIQSILFAGVFNEP 337
+ +I+F G P
Sbjct: 416 PLNTIIFMGRVANP 429
>pdb|3CAA|A Chain A, Cleaved Antichymotrypsin A347r
Length = 341
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 156/326 (47%), Gaps = 50/326 (15%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLR-LPENLDKLD 59
+F F L L KNV SP SI AL F+S L ++L+ L NL +
Sbjct: 13 DFAFSLYKQLVLKAPDKNVIFSPLSISTALA---FLSLGAHNTTLTEILKGLKFNLTETS 69
Query: 60 TMNVYK-MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTA----IFPSEIQSMDF 114
+++ + L++ L ++D L + N +FV +++ + + T ++ SE + DF
Sbjct: 70 EAEIHQSFQHLLRTLNQSSDE-LQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDF 128
Query: 115 GNEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVL---------W-LP----STQE 160
+ A + IN +V T+ I DLI ++S+T +VL W +P T +
Sbjct: 129 QDSAAAKKLINDYVKNGTRGKITDLIK--DLDSQTMMVLVNYIFFKAKWEMPFDPQDTHQ 186
Query: 161 SIIIIT----VLSSELNAHILEVPY--------------KGGNMSMFFLLPPFASQDGVG 202
S ++ V+ ++ H L +PY GN S F+LP QD +
Sbjct: 187 SRFYLSKKKWVMVPMMSLHHLTIPYFRDEELSCTVVELKYTGNASALFILP---DQDKME 243
Query: 203 DILAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADL 262
++ A L P + KR+ + + + E+ +PKFS++++ NL L LG+++ F+ ADL
Sbjct: 244 EVEAMLL--PETLKRWRDSLEFREIGELYLPKFSISRDYNLNDILLQLGIEEAFTSKADL 301
Query: 263 SRLTDSH-IAFGDAVHKARLDLDEQG 287
S +T + +A VHKA LD+ E+G
Sbjct: 302 SGITGARNLAVSQVVHKAVLDVFEEG 327
>pdb|1AS4|A Chain A, Cleaved Antichymotrypsin A349r
Length = 341
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 156/326 (47%), Gaps = 50/326 (15%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLR-LPENLDKLD 59
+F F L L KNV SP SI AL F+S L ++L+ L NL +
Sbjct: 13 DFAFSLYKQLVLKAPDKNVIFSPLSISTALA---FLSLGAHNTTLTEILKGLKFNLTETS 69
Query: 60 TMNVYK-MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTA----IFPSEIQSMDF 114
+++ + L++ L ++D L + N +FV +++ + + T ++ SE + DF
Sbjct: 70 EAEIHQSFQHLLRTLNQSSDE-LQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDF 128
Query: 115 GNEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVL---------W-LP----STQE 160
+ A + IN +V T+ I DLI ++S+T +VL W +P T +
Sbjct: 129 QDSAAAKKLINDYVKNGTRGKITDLIK--DLDSQTMMVLVNYIFFKAKWEMPFDPQDTHQ 186
Query: 161 SIIIIT----VLSSELNAHILEVPY--------------KGGNMSMFFLLPPFASQDGVG 202
S ++ V+ ++ H L +PY GN S F+LP QD +
Sbjct: 187 SRFYLSKKKWVMVPMMSLHHLTIPYFRDEELSCTVVELKYTGNASALFILP---DQDKME 243
Query: 203 DILAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADL 262
++ A L P + KR+ + + + E+ +PKFS++++ NL L LG+++ F+ ADL
Sbjct: 244 EVEAMLL--PETLKRWRDSLEFREIGELYLPKFSISRDYNLNDILLQLGIEEAFTSKADL 301
Query: 263 SRLTDSH-IAFGDAVHKARLDLDEQG 287
S +T + +A VHKA LD+ E+G
Sbjct: 302 SGITGARNLAVSQVVHKAVLDVFEEG 327
>pdb|4CAA|A Chain A, Cleaved Antichymotrypsin T345r
Length = 341
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 156/326 (47%), Gaps = 50/326 (15%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLR-LPENLDKLD 59
+F F L L KNV SP SI AL F+S L ++L+ L NL +
Sbjct: 13 DFAFSLYKQLVLKAPDKNVIFSPLSISTALA---FLSLGAHNTTLTEILKGLKFNLTETS 69
Query: 60 TMNVYK-MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTA----IFPSEIQSMDF 114
+++ + L++ L ++D L + N +FV +++ + + T ++ SE + DF
Sbjct: 70 EAEIHQSFQHLLRTLNQSSDE-LQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDF 128
Query: 115 GNEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVL---------W-LP----STQE 160
+ A + IN +V T+ I DLI ++S+T +VL W +P T +
Sbjct: 129 QDSAAAKKLINDYVKNGTRGKITDLIK--DLDSQTMMVLVNYIFFKAKWEMPFDPQDTHQ 186
Query: 161 SIIIIT----VLSSELNAHILEVPY--------------KGGNMSMFFLLPPFASQDGVG 202
S ++ V+ ++ H L +PY GN S F+LP QD +
Sbjct: 187 SRFYLSKKKWVMVPMMSLHHLTIPYFRDEELSCTVVELKYTGNASALFILP---DQDKME 243
Query: 203 DILAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADL 262
++ A L P + KR+ + + + E+ +PKFS++++ NL L LG+++ F+ ADL
Sbjct: 244 EVEAMLL--PETLKRWRDSLEFREIGELYLPKFSISRDYNLNDILLQLGIEEAFTSKADL 301
Query: 263 SRLTDSH-IAFGDAVHKARLDLDEQG 287
S +T + +A VHKA LD+ E+G
Sbjct: 302 SGITGARNLAVSQVVHKAVLDVFEEG 327
>pdb|1HP7|A Chain A, A 2.1 Angstrom Structure Of An Uncleaved
Alpha-1-Antitrypsin Shows Variability Of The Reactive
Center And Other Loops
Length = 394
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 93/376 (24%), Positives = 173/376 (46%), Gaps = 49/376 (13%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
EF F L L + + N+F SP SI A + +T + + L NL ++
Sbjct: 32 EFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKGDTHDEILEGLNF--NLTEIPE 89
Query: 61 MNVYK-MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVK----ECMTAIFPSEIQSMDFG 115
+++ ++L+ L DS L T+ N +F+++ + + E + ++ SE +++FG
Sbjct: 90 AQIHEGFQELLHTLN-QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFG 148
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVLWL------------PSTQESII 163
+ EA + IN +V + T+ I DL+ ++ LV ++ T+E
Sbjct: 149 DTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDF 208
Query: 164 IITVLSS------------------ELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDIL 205
+ +++ +L++ +L + Y G ++FFL + + +
Sbjct: 209 HVDQVTTVKVPMMKRLGMFNIQHCKKLSSWVLLMKYLGNATAIFFL----PDEGKLQHLE 264
Query: 206 AALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRL 265
L D + +F E+ ++ + + +PK S+T +L L LG+ +FS GADLS +
Sbjct: 265 NELTHDIIT--KFLEN-EDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSNGADLSGV 321
Query: 266 T-DSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVRYEANHPFLYFLVDKE 324
T ++ + AVHKA L +DE+G + A S P E V++ N PF++ ++D+
Sbjct: 322 TEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPMSIPPE-VKF--NKPFVFLMIDQN 378
Query: 325 IQSILFAGVFNEPPNK 340
+S LF G P K
Sbjct: 379 TKSPLFMGKVVNPTQK 394
>pdb|2ACH|A Chain A, Crystal Structure Of Cleaved Human Alpha1-antichymotrypsin
At 2.7 Angstroms Resolution And Its Comparison With
Other Serpins
Length = 360
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 157/326 (48%), Gaps = 50/326 (15%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLR-LPENLDKLD 59
+F F L L KNV SP SI AL F+S L ++L+ L NL +
Sbjct: 32 DFAFSLYKQLVLKAPDKNVIFSPLSISTALA---FLSLGAHNTTLTEILKGLKFNLTETS 88
Query: 60 TMNVYK-MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTA----IFPSEIQSMDF 114
+++ + L++ L ++D L + N +FV +++ + + T ++ SE + DF
Sbjct: 89 EAEIHQSFQHLLRTLNQSSDE-LQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDF 147
Query: 115 GNEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVL---------W-LP----STQE 160
+ A + IN +V T+ I DLI ++S+T +VL W +P T +
Sbjct: 148 QDSAAAKKLINDYVKNGTRGKITDLIK--DLDSQTMMVLVNYIFFKAKWEMPFDPQDTHQ 205
Query: 161 SIIIIT----VLSSELNAHILEVPY--------------KGGNMSMFFLLPPFASQDGVG 202
S ++ V+ ++ H L +PY GN S F+LP QD +
Sbjct: 206 SRFYLSKKKWVMVPMMSLHHLTIPYFRDEELSCTVVELKYTGNASALFILP---DQDKME 262
Query: 203 DILAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADL 262
++ A L P + KR+ + + + E+ +PKFS++++ NL L LG+++ F+ ADL
Sbjct: 263 EVEAMLL--PETLKRWRDSLEFREIGELYLPKFSISRDYNLNDILLQLGIEEAFTSKADL 320
Query: 263 SRLTDS-HIAFGDAVHKARLDLDEQG 287
S +T + ++A VHKA LD+ E+G
Sbjct: 321 SGITGARNLAVSQVVHKAVLDVFEEG 346
>pdb|3FGQ|A Chain A, Crystal Structure Of Native Human Neuroserpin
pdb|3FGQ|B Chain B, Crystal Structure Of Native Human Neuroserpin
Length = 397
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 90/383 (23%), Positives = 159/383 (41%), Gaps = 59/383 (15%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+ + ++ L + +N+ SP SI A+ + +T+ ++ + D L
Sbjct: 25 DLSVNMYNRLRATGEDENILFSPLSIALAMGMMELGAQGSTQKEIRHSM----GYDSLKN 80
Query: 61 MNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKE----CMTAIFPSEIQSMDFGN 116
+ K + +S N +FV + V E M F + + +DF
Sbjct: 81 GEEFSFLKEFSNMVTAKESQYVMKIANSLFVQNGFHVNEEFLQMMKKYFNAAVNHVDFSQ 140
Query: 117 EVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVL---------W------------- 154
V A IN WV T N +KDL++ ++ T L L W
Sbjct: 141 NVAVANYINKWVENNTNNLVKDLVSPRDFDAATYLALINAVYFKGNWKSQFRPENTRTFS 200
Query: 155 LPSTQESIIIITVL--------------SSELNA--HILEVPYKGGNMSMFFLLPPFASQ 198
ES + I ++ S+E +LE+PY+G +SM +L S+
Sbjct: 201 FTKDDESEVQIPMMYQQGEFYYGEFSDGSNEAGGIYQVLEIPYEGDEISMMLVL----SR 256
Query: 199 DGVGDILAALKKDPTSFKRFTEDSQN---LKPVEIAIPKFSLTQEMNLIPTLSDLGVKDL 255
V LA L +P + E+ N + VE+ +P+F++ QE++L L LG+ ++
Sbjct: 257 QEVP--LATL--EPLVKAQLVEEWANSVKKQKVEVYLPRFTVEQEIDLKDVLKALGITEI 312
Query: 256 FSPGADLSRLTDS-HIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVRYEANH 314
F A+L+ L+D+ I A+HK+ L+++E+G + A L P + +H
Sbjct: 313 FIKDANLTGLSDNKEIFLSKAIHKSFLEVNEEGSEAAAVSGMIAISRMAVLYP-QVIVDH 371
Query: 315 PFLYFLVDKEIQSILFAGVFNEP 337
PF + + ++ +ILF G P
Sbjct: 372 PFFFLIRNRRTGTILFMGRVMHP 394
>pdb|3F5N|A Chain A, Structure Of Native Human Neuroserpin
pdb|3F5N|B Chain B, Structure Of Native Human Neuroserpin
pdb|3F5N|C Chain C, Structure Of Native Human Neuroserpin
pdb|3F5N|D Chain D, Structure Of Native Human Neuroserpin
pdb|3F5N|E Chain E, Structure Of Native Human Neuroserpin
Length = 407
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 90/383 (23%), Positives = 159/383 (41%), Gaps = 59/383 (15%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+ + ++ L + +N+ SP SI A+ + +T+ ++ + D L
Sbjct: 25 DLSVNMYNRLRATGEDENILFSPLSIALAMGMMELGAQGSTQKEIRHSM----GYDSLKN 80
Query: 61 MNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKE----CMTAIFPSEIQSMDFGN 116
+ K + +S N +FV + V E M F + + +DF
Sbjct: 81 GEEFSFLKEFSNMVTAKESQYVMKIANSLFVQNGFHVNEEFLQMMKKYFNAAVNHVDFSQ 140
Query: 117 EVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVL---------W------------- 154
V A IN WV T N +KDL++ ++ T L L W
Sbjct: 141 NVAVANYINKWVENNTNNLVKDLVSPRDFDAATYLALINAVYFKGNWKSQFRPENTRTFS 200
Query: 155 LPSTQESIIIITVL--------------SSELNA--HILEVPYKGGNMSMFFLLPPFASQ 198
ES + I ++ S+E +LE+PY+G +SM +L S+
Sbjct: 201 FTKDDESEVQIPMMYQQGEFYYGEFSDGSNEAGGIYQVLEIPYEGDEISMMLVL----SR 256
Query: 199 DGVGDILAALKKDPTSFKRFTEDSQN---LKPVEIAIPKFSLTQEMNLIPTLSDLGVKDL 255
V LA L +P + E+ N + VE+ +P+F++ QE++L L LG+ ++
Sbjct: 257 QEVP--LATL--EPLVKAQLVEEWANSVKKQKVEVYLPRFTVEQEIDLKDVLKALGITEI 312
Query: 256 FSPGADLSRLTDS-HIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVRYEANH 314
F A+L+ L+D+ I A+HK+ L+++E+G + A L P + +H
Sbjct: 313 FIKDANLTGLSDNKEIFLSKAIHKSFLEVNEEGSEAAAVSGMIAISRMAVLYP-QVIVDH 371
Query: 315 PFLYFLVDKEIQSILFAGVFNEP 337
PF + + ++ +ILF G P
Sbjct: 372 PFFFLIRNRRTGTILFMGRVMHP 394
>pdb|1QLP|A Chain A, 2.0 Angstrom Structure Of Intact Alpha-1-Antitrypsin: A
Canonical Template For Active Serpins
Length = 394
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 92/376 (24%), Positives = 174/376 (46%), Gaps = 49/376 (13%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
EF F L L + + N+F SP SI A + +T + + L NL ++
Sbjct: 32 EFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNF--NLTEIPE 89
Query: 61 MNVYK-MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVK----ECMTAIFPSEIQSMDFG 115
+++ ++L++ L DS L T+ N +F+++ + + E + ++ SE +++FG
Sbjct: 90 AQIHEGFQELLRTLN-QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFG 148
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVLWL------------PSTQESII 163
+ EA + IN +V + T+ I DL+ ++ LV ++ T+E
Sbjct: 149 DTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDF 208
Query: 164 IITVLSS------------------ELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDIL 205
+ +++ +L++ +L + Y G ++FFL + + +
Sbjct: 209 HVDQVTTVKVPMMKRLGMFNIQHCKKLSSWVLLMKYLGNATAIFFL----PDEGKLQHLE 264
Query: 206 AALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRL 265
L D + +F E+ ++ + + +PK S+T +L L LG+ +FS GADLS +
Sbjct: 265 NELTHDIIT--KFLEN-EDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSNGADLSGV 321
Query: 266 T-DSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVRYEANHPFLYFLVDKE 324
T ++ + AVHKA L +DE+G + A S P E V++ N PF++ ++++
Sbjct: 322 TEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPMSIPPE-VKF--NKPFVFLMIEQN 378
Query: 325 IQSILFAGVFNEPPNK 340
+S LF G P K
Sbjct: 379 TKSPLFMGKVVNPTQK 394
>pdb|3NE4|A Chain A, 1.8 Angstrom Structure Of Intact Native Wild-Type
Alpha-1-Antitrypsin
Length = 424
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 92/376 (24%), Positives = 174/376 (46%), Gaps = 49/376 (13%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
EF F L L + + N+F SP SI A + +T + + L NL ++
Sbjct: 62 EFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNF--NLTEIPE 119
Query: 61 MNVYK-MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVK----ECMTAIFPSEIQSMDFG 115
+++ ++L++ L DS L T+ N +F+++ + + E + ++ SE +++FG
Sbjct: 120 AQIHEGFQELLRTLN-QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFG 178
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVLWL------------PSTQESII 163
+ EA + IN +V + T+ I DL+ ++ LV ++ T+E
Sbjct: 179 DTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDF 238
Query: 164 IITVLSS------------------ELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDIL 205
+ +++ +L++ +L + Y G ++FFL + + +
Sbjct: 239 HVDQVTTVKVPMMKRLGMFNIQHCKKLSSWVLLMKYLGNATAIFFL----PDEGKLQHLE 294
Query: 206 AALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRL 265
L D + +F E+ ++ + + +PK S+T +L L LG+ +FS GADLS +
Sbjct: 295 NELTHDIIT--KFLEN-EDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSNGADLSGV 351
Query: 266 T-DSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVRYEANHPFLYFLVDKE 324
T ++ + AVHKA L +DE+G + A S P E V++ N PF++ ++++
Sbjct: 352 TEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPMSIPPE-VKF--NKPFVFLMIEQN 408
Query: 325 IQSILFAGVFNEPPNK 340
+S LF G P K
Sbjct: 409 TKSPLFMGKVVNPTQK 424
>pdb|2QUG|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin, Crystal Form A
pdb|3CWL|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin, Crystal Form B
pdb|3CWM|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin Complexed With
Citrate
Length = 394
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 92/376 (24%), Positives = 174/376 (46%), Gaps = 49/376 (13%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
EF F L L + + N+F SP SI A + +T + + L NL ++
Sbjct: 32 EFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNF--NLTEIPE 89
Query: 61 MNVYK-MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVK----ECMTAIFPSEIQSMDFG 115
+++ ++L++ L DS L T+ N +F+++ + + E + ++ SE +++FG
Sbjct: 90 AQIHEGFQELLRTLN-QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFG 148
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVLWL------------PSTQESII 163
+ EA + IN +V + T+ I DL+ ++ LV ++ T+E
Sbjct: 149 DTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDF 208
Query: 164 IITVLSS------------------ELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDIL 205
+ +++ +L++ +L + Y G ++FFL + + +
Sbjct: 209 HVDQVTTVKVPMMKRLGMFNIQHXKKLSSWVLLMKYLGNATAIFFL----PDEGKLQHLE 264
Query: 206 AALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRL 265
L D + +F E+ ++ + + +PK S+T +L L LG+ +FS GADLS +
Sbjct: 265 NELTHDIIT--KFLEN-EDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSNGADLSGV 321
Query: 266 T-DSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVRYEANHPFLYFLVDKE 324
T ++ + AVHKA L +DE+G + A S P E V++ N PF++ ++++
Sbjct: 322 TEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPMSIPPE-VKF--NKPFVFLMIEQN 378
Query: 325 IQSILFAGVFNEPPNK 340
+S LF G P K
Sbjct: 379 TKSPLFMGKVVNPTQK 394
>pdb|1KCT|A Chain A, Alpha1-Antitrypsin
Length = 394
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 92/376 (24%), Positives = 174/376 (46%), Gaps = 49/376 (13%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
EF F L L + + N+F SP SI A + +T + + L NL ++
Sbjct: 32 EFAFSLYRQLAHQSNSTNIFFSPVSIAAAFAMLSLGAKGDTHDEILEGLNF--NLTEIPE 89
Query: 61 MNVYK-MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVK----ECMTAIFPSEIQSMDFG 115
+++ ++L++ L DS L T+ N +F+++ + + E + ++ SE +++FG
Sbjct: 90 AQIHEGFQELLRTLN-QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFG 148
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVLWL------------PSTQESII 163
+ EA + IN +V + T+ I DL+ ++ LV ++ T+E
Sbjct: 149 DTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDF 208
Query: 164 IITVLSS------------------ELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDIL 205
+ +++ +L++ +L + Y G ++FFL + + +
Sbjct: 209 HVDQVTTVKVPMMKRLGMFNIQHCKKLSSWVLLMKYLGNATAIFFL----PDEGKLQHLE 264
Query: 206 AALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRL 265
L D + +F E+ ++ + + +PK S+T +L L LG+ +FS GADLS +
Sbjct: 265 NELTHDIIT--KFLEN-EDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSNGADLSGV 321
Query: 266 T-DSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVRYEANHPFLYFLVDKE 324
T ++ + AVHKA L +DE+G + A S P E V++ N PF++ ++++
Sbjct: 322 TEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPMSIPPE-VKF--NKPFVFLMIEQN 378
Query: 325 IQSILFAGVFNEPPNK 340
+S LF G P K
Sbjct: 379 TKSPLFMGKVVNPTQK 394
>pdb|3T1P|A Chain A, Crystal Structure Of An Alpha-1-Antitrypsin Trimer
Length = 371
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 93/376 (24%), Positives = 173/376 (46%), Gaps = 49/376 (13%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
EF F L L + + N+F SP SI A + +T + + L NL ++
Sbjct: 9 EFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNF--NLTEIPE 66
Query: 61 MNVYK-MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVK----ECMTAIFPSEIQSMDFG 115
+++ ++L++ L DS L T+ N +F+++ + + E + ++ SE +++FG
Sbjct: 67 AQIHEGFQELLRTLN-QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFG 125
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVLWL------------PSTQE--- 160
+ EA + IN +V + T+ I DL+ ++ LV ++ T+E
Sbjct: 126 DTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDF 185
Query: 161 ---SIIIITV------------LSSELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDIL 205
+ + V S +L++ +L + Y G ++FFL + + +
Sbjct: 186 HVDQVTTVKVPMMKRLGMFNIQHSKKLSSWVLLMKYLGNATAIFFL----PDEGKLQHLE 241
Query: 206 AALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRL 265
L D + +F E+ ++ + + +PK +T +L L LG+ +FS GADLS +
Sbjct: 242 NELTHDIIT--KFLEN-EDRRSASLHLPKLCITGTYDLKSVLGQLGITKVFSNGADLSGV 298
Query: 266 T-DSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVRYEANHPFLYFLVDKE 324
T ++ + AVHKA L +DE+G + A S P E V++ N PF++ ++++
Sbjct: 299 TEEAPLKLSKAVHKAVLCIDEKGTEAAGAMFLEAIPRSIPPE-VKF--NKPFVFLMIEQN 355
Query: 325 IQSILFAGVFNEPPNK 340
+S LF G P K
Sbjct: 356 TKSPLFMGKVVNPTQK 371
>pdb|3DRU|A Chain A, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
pdb|3DRU|B Chain B, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
pdb|3DRU|C Chain C, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
Length = 404
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 92/376 (24%), Positives = 174/376 (46%), Gaps = 49/376 (13%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
EF F L L + + N+F SP SI A + +T + + L NL ++
Sbjct: 42 EFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNF--NLTEIPE 99
Query: 61 MNVYK-MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVK----ECMTAIFPSEIQSMDFG 115
+++ ++L++ L DS L T+ N +F+++ + + E + ++ SE +++FG
Sbjct: 100 AQIHEGFQELLRTLN-QPDSQLQLTTGNFLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFG 158
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVLWL------------PSTQESII 163
+ EA + IN +V + T+ I DL+ ++ LV ++ T+E
Sbjct: 159 DTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDF 218
Query: 164 IITVLSS------------------ELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDIL 205
+ +++ +L++ +L + Y G ++FFL + + +
Sbjct: 219 HVDQVTTVKVPMMKRLGMFNIQHCKKLSSWVLLMKYLGNATAIFFL----PDEGKLQHLE 274
Query: 206 AALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRL 265
L D + +F E+ ++ + + +PK S+T +L L LG+ +FS GADLS +
Sbjct: 275 NELTHDIIT--KFLEN-EDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSNGADLSGV 331
Query: 266 T-DSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVRYEANHPFLYFLVDKE 324
T ++ + AVHKA L +DE+G + A S P E V++ N PF++ ++++
Sbjct: 332 TEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPMSIPPE-VKF--NKPFVFLMIEQN 388
Query: 325 IQSILFAGVFNEPPNK 340
+S LF G P K
Sbjct: 389 TKSPLFMGKVVNPTQK 404
>pdb|3DRM|A Chain A, 2.2 Angstrom Crystal Structure Of Thr114phe Alpha1-
Antitrypsin
Length = 404
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 92/376 (24%), Positives = 173/376 (46%), Gaps = 49/376 (13%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
EF F L L + + N+F SP SI A + +T + + L NL ++
Sbjct: 42 EFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNF--NLTEIPE 99
Query: 61 MNVYK-MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVK----ECMTAIFPSEIQSMDFG 115
+++ ++L++ L DS L T N +F+++ + + E + ++ SE +++FG
Sbjct: 100 AQIHEGFQELLRTLN-QPDSQLQLTFGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFG 158
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVLWL------------PSTQESII 163
+ EA + IN +V + T+ I DL+ ++ LV ++ T+E
Sbjct: 159 DTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDF 218
Query: 164 IITVLSS------------------ELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDIL 205
+ +++ +L++ +L + Y G ++FFL + + +
Sbjct: 219 HVDQVTTVKVPMMKRLGMFNIQHCKKLSSWVLLMKYLGNATAIFFL----PDEGKLQHLE 274
Query: 206 AALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRL 265
L D + +F E+ ++ + + +PK S+T +L L LG+ +FS GADLS +
Sbjct: 275 NELTHDIIT--KFLEN-EDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSNGADLSGV 331
Query: 266 T-DSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVRYEANHPFLYFLVDKE 324
T ++ + AVHKA L +DE+G + A S P E V++ N PF++ ++++
Sbjct: 332 TEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPMSIPPE-VKF--NKPFVFLMIEQN 388
Query: 325 IQSILFAGVFNEPPNK 340
+S LF G P K
Sbjct: 389 TKSPLFMGKVVNPTQK 404
>pdb|1HLE|A Chain A, Crystal Structure Of Cleaved Equine Leucocyte Elastase
Inhibitor Determined At 1.95 Angstroms Resolution
Length = 345
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 147/332 (44%), Gaps = 62/332 (18%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
F DL LN ++ N+F+SP SI AL + + NT A + + L DT
Sbjct: 11 HFAVDLFRALNESDPTGNIFISPLSISSALAMIFLGTRGNTAAQVSKALYF-------DT 63
Query: 61 MNVYKMEKLIQGLRANAD----------SGLTFTSTNKIFVNDKIPVKECMTAIFPSEIQ 110
V + Q L A+ + + + F+ D + + M + +E+
Sbjct: 64 --VEDIHSRFQSLNADINKPGAPYILKLANRLYGEKTYNFLADFLASTQKM---YGAELA 118
Query: 111 SMDFGNEVEAARA-INSWVAQETKNNIKDLIATGQVNSRTNLVL---------WL----- 155
S+DF E AR IN WV +T+ I +L+ G V++ T LVL W
Sbjct: 119 SVDFQQAPEDARKEINEWVKGQTEGKIPELLVKGMVDNMTKLVLVNAIYFKGNWQQKFMK 178
Query: 156 PSTQESIIIITVLSS------------------ELNAHILEVPYKGGNMSMFFLLPPFAS 197
+T+++ + + +L +LE+PY+G +SM LLP
Sbjct: 179 EATRDAPFRLNKKDTKTVKMMYQKKKFPYNYIEDLKCRVLELPYQGKELSMIILLPDDIE 238
Query: 198 QDGVGDILAALKKDPT--SFKRFTE-DSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKD 254
+ G L ++K T + +T+ ++ L V + +P+F L + +L L+ LGV+D
Sbjct: 239 DESTG--LEKIEKQLTLDKLREWTKPENLYLAEVNVHLPRFKLEESYDLTSHLARLGVQD 296
Query: 255 LFSPG-ADLSRLTDSHIAF-GDAVHKARLDLD 284
LF+ G ADLS ++ + F +HK+ +DL+
Sbjct: 297 LFNRGKADLSGMSGARDLFVSKIIHKSFVDLN 328
>pdb|1PSI|A Chain A, Intact Recombined Alpha1-Antitrypsin Mutant Phe 51 To Leu
Length = 394
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 91/376 (24%), Positives = 173/376 (46%), Gaps = 49/376 (13%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
EF F L L + + N+ SP SI A + +T + + L NL ++
Sbjct: 32 EFAFSLYRQLAHQSNSTNILFSPVSIATAFAMLSLGTKADTHDEILEGLNF--NLTEIPE 89
Query: 61 MNVYK-MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVK----ECMTAIFPSEIQSMDFG 115
+++ ++L++ L DS L T+ N +F+++ + + E + ++ SE +++FG
Sbjct: 90 AQIHEGFQELLRTLN-QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFG 148
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVLWL------------PSTQESII 163
+ EA + IN +V + T+ I DL+ ++ LV ++ T+E
Sbjct: 149 DTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDF 208
Query: 164 IITVLSS------------------ELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDIL 205
+ +++ +L++ +L + Y G ++FFL + + +
Sbjct: 209 HVDQVTTVKVPMMKRLGMFNIQHXKKLSSWVLLMKYLGNATAIFFL----PDEGKLQHLE 264
Query: 206 AALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRL 265
L D + +F E+ ++ + + +PK S+T +L L LG+ +FS GADLS +
Sbjct: 265 NELTHDIIT--KFLEN-EDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSNGADLSGV 321
Query: 266 T-DSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVRYEANHPFLYFLVDKE 324
T ++ + AVHKA L +DE+G + A S P E V++ N PF++ ++++
Sbjct: 322 TEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPMSIPPE-VKF--NKPFVFLMIEQN 378
Query: 325 IQSILFAGVFNEPPNK 340
+S LF G P K
Sbjct: 379 TKSPLFMGKVVNPTQK 394
>pdb|1OO8|A Chain A, Crystal Structure Of A1pi-Pittsburgh In The Native
Conformation
pdb|1OPH|A Chain A, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And
S195a Trypsin
Length = 394
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 92/376 (24%), Positives = 173/376 (46%), Gaps = 49/376 (13%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
EF F L L + + N+ SP SI A + +T + + L NL ++
Sbjct: 32 EFAFSLYRQLAHQSNSTNILFSPVSIAAAFAMLSLGAKGDTHDEILEGLNF--NLTEIPE 89
Query: 61 MNVYK-MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVK----ECMTAIFPSEIQSMDFG 115
+++ ++L++ L DS L T+ N +F+++ + + E + ++ SE +++FG
Sbjct: 90 AQIHEGFQELLRTLN-QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFG 148
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVLWL------------PSTQE--- 160
+ EA + IN +V + T+ I DL+ ++ LV ++ T+E
Sbjct: 149 DTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDF 208
Query: 161 ---SIIIITV------------LSSELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDIL 205
+ + V S +L++ +L + Y G ++FFL + + +
Sbjct: 209 HVDQVTTVKVPMMKRLGMFNIQHSKKLSSWVLLMKYLGNATAIFFL----PDEGKLQHLE 264
Query: 206 AALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRL 265
L D + +F E+ ++ + + +PK S+T +L L LG+ +FS GADLS +
Sbjct: 265 NELTHDIIT--KFLEN-EDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSNGADLSGV 321
Query: 266 T-DSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVRYEANHPFLYFLVDKE 324
T ++ + AVHKA L +DE+G + A S P E V++ N PF++ ++++
Sbjct: 322 TEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPRSIPPE-VKF--NKPFVFLIIEQN 378
Query: 325 IQSILFAGVFNEPPNK 340
++ LF G P K
Sbjct: 379 TKAPLFMGRVVNPTQK 394
>pdb|1IZ2|A Chain A, Interactions Causing The Kinetic Trap In Serpin Protein
Folding
Length = 394
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 90/376 (23%), Positives = 170/376 (45%), Gaps = 49/376 (13%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
EF F L L + + N+ SP SI A + +T + + L NL ++
Sbjct: 32 EFAFSLYRQLAHQSNSTNILFSPVSIAAAFAMLSLGAKGDTHDEILEGLNF--NLTEIPE 89
Query: 61 MNVYK-MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVK----ECMTAIFPSEIQSMDFG 115
+++ ++L+ L DS L T+ N +F+++ + + E + ++ SE +++FG
Sbjct: 90 AQIHEGFQELLHTLN-QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFG 148
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVLWL------------PSTQESII 163
+ EA + IN +V + T+ I DL+ ++ LV ++ T+E
Sbjct: 149 DTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDF 208
Query: 164 IITVLSS------------------ELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDIL 205
+ +++ +L++ +L + Y G ++FFL + + +
Sbjct: 209 HVDQVTTVKVPMMKRLGMFNIQHCKKLSSWVLLMKYLGNATAIFFL----PDEGKLQHLE 264
Query: 206 AALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRL 265
L D + +F E+ ++ + + +PK S+T +L L LG+ +FS GADLS +
Sbjct: 265 NELTHDIIT--KFLEN-EDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSNGADLSGV 321
Query: 266 T-DSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVRYEANHPFLYFLVDKE 324
T ++ + AVHKA L +DE+G + A S P E + N PF++ ++D+
Sbjct: 322 TEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPMSIPPEA---KFNKPFVFLIIDQN 378
Query: 325 IQSILFAGVFNEPPNK 340
++ LF G P K
Sbjct: 379 TKAPLFMGRVVNPTQK 394
>pdb|3LW2|A Chain A, Mouse Plasminogen Activator Inhibitor-1 (Pai-1)
Length = 379
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 91/368 (24%), Positives = 159/368 (43%), Gaps = 55/368 (14%)
Query: 12 NANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTMNVYKMEKLIQ 71
A+K +NV SP+ + L + T ++ + N +K + ++ K +
Sbjct: 25 QASKDRNVVFSPYGVSSVLAMLQMTTAGKTRRQIQDAMGFKVN-EKGTAHALRQLSKELM 83
Query: 72 GLRANADSGLTFTSTNKIFVNDKIPVKECMT----AIFPSEIQSMDFGNEVEAAR-AINS 126
G + ++ + IFV + + + +F + ++ +DF +EVE AR IN
Sbjct: 84 GPWNKNE----ISTADAIFVQRDLELVQGFMPHFFKLFQTMVKQVDF-SEVERARFIIND 138
Query: 127 WVAQETKNNIKDLIATGQVNSRTNLVL---------WL-----PSTQE--------SIII 164
WV + TK I DL+A G V+ T LVL W ST + S +
Sbjct: 139 WVERHTKGMINDLLAKGAVDELTRLVLVNALYFSGQWKTPFLEASTHQRLFHKSDGSTVS 198
Query: 165 ITVLSSE-------------LNAHILEVPYKGGNMSMFFLLPPFASQDGVGDILAALKKD 211
+ +++ L ++E+PY+G +SMF + PF + + L D
Sbjct: 199 VPMMAQSNKFNYTEFTTPDGLEYDVVELPYQGDTLSMF-IAAPFEKDVHLSALTNIL--D 255
Query: 212 PTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPG-ADLSRLTDS-H 269
+++ + L P + +PKFSL E++L L LG+ D+FS AD + L+D
Sbjct: 256 AELIRQWKGNMTRL-PRLLILPKFSLETEVDLRGPLEKLGMPDMFSATLADFTSLSDQEQ 314
Query: 270 IAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVRYEANHPFLYFLVDKEIQSIL 329
++ A+ K R++++E G AF S + P + FL+ + ++IL
Sbjct: 315 LSVAQALQKVRIEVNESGTVASSST---AFVISARMAPTEMVIDRSFLFVVRHNPTETIL 371
Query: 330 FAGVFNEP 337
F G EP
Sbjct: 372 FMGQVMEP 379
>pdb|1ATU|A Chain A, Uncleaved Alpha-1-Antitrypsin
Length = 374
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 90/376 (23%), Positives = 173/376 (46%), Gaps = 49/376 (13%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
EF F L L + + N+ SP SI A + +T + + L NL ++
Sbjct: 12 EFAFSLYRQLAHQSNSTNILFSPVSIAAAFAMLSLGAKGDTHDEILEGLNF--NLTEIPE 69
Query: 61 MNVYK-MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVK----ECMTAIFPSEIQSMDFG 115
+++ ++L++ L DS L T+ N +F+++ + + E + ++ SE +++FG
Sbjct: 70 AQIHEGFQELLRTLN-QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFG 128
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVLWL------------PSTQESII 163
+ EA + IN +V + T+ I DL+ ++ LV ++ T+E
Sbjct: 129 DTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDF 188
Query: 164 IITVLSS------------------ELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDIL 205
+ +++ +L++ +L + Y G ++FFL + + +
Sbjct: 189 HVDQVTTVKVPMMKRLGMFNIQHCKKLSSWVLLMKYLGNATAIFFL----PDEGKLQHLE 244
Query: 206 AALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRL 265
L D + +F E+ ++ + + +PK S+T +L L LG+ +FS GADLS +
Sbjct: 245 NELTHDIIT--KFLEN-EDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSNGADLSGV 301
Query: 266 T-DSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVRYEANHPFLYFLVDKE 324
T ++ + AVHKA L +DE+G + A S P E V++ N PF++ ++++
Sbjct: 302 TEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPMSIPPE-VKF--NKPFVFLIIEQN 358
Query: 325 IQSILFAGVFNEPPNK 340
++ LF G P K
Sbjct: 359 TKAPLFMGRVVNPTQK 374
>pdb|3EOX|A Chain A, High Quality Structure Of Cleaved Pai-1-Stab
Length = 379
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 95/388 (24%), Positives = 164/388 (42%), Gaps = 73/388 (18%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+F + + A+K +NV SP+ + L + T+ ++ + + DK
Sbjct: 14 DFGVRVFQQVAQASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKID-DKGMA 72
Query: 61 MNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTA----IFPSEIQSMDFGN 116
+ + K + G N D ++T+ IFV + + + +F S ++ +DF +
Sbjct: 73 PALRHLYKELMG-PWNKDE---ISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDF-S 127
Query: 117 EVEAAR-AINSWVAQETKNNIKDLIATGQVNSRTNLVL---------W------------ 154
EVE AR IN WV TK I L+ TG V+ T LVL W
Sbjct: 128 EVERARFIINDWVKTHTKGMISHLLGTGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRR 187
Query: 155 -LPSTQESIIIITVLS----------SELNAH---ILEVPYKGGNMSMFFLLP-----PF 195
+ S + + +++ + + H ILE+PY G +SMF P P
Sbjct: 188 LFHKSDGSTVSVPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPL 247
Query: 196 ASQDGV--GDILAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVK 253
++ + +++ K + T R + +PKFSL E++L L +LG+
Sbjct: 248 SALTNILSAQLISHWKGNMTRLPRL-----------LVLPKFSLETEVDLRKPLENLGMT 296
Query: 254 DLFSP-GADLSRLTDS---HIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVR 309
D+F P AD + L+D H+A A+ K +++++E G V S+R + P
Sbjct: 297 DMFRPFQADFTSLSDQEPLHVAL--ALQKVKIEVNESGTVASSSTAVIV--SAR-MAPEE 351
Query: 310 YEANHPFLYFLVDKEIQSILFAGVFNEP 337
+ PFL+ + ++LF G EP
Sbjct: 352 IIIDRPFLFVVRHNPTGTVLFMGQVMEP 379
>pdb|1DB2|A Chain A, Crystal Structure Of Native Plasminogen Activator
Inhibitor- 1
pdb|1DB2|B Chain B, Crystal Structure Of Native Plasminogen Activator
Inhibitor- 1
Length = 377
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 95/388 (24%), Positives = 164/388 (42%), Gaps = 73/388 (18%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+F + + A+K +NV SP+ + L + T+ ++ + + DK
Sbjct: 12 DFGVRVFQQVAQASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKID-DKGMA 70
Query: 61 MNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTA----IFPSEIQSMDFGN 116
+ + K + G N D ++T+ IFV + + + +F S ++ +DF +
Sbjct: 71 PALRHLYKELMG-PWNKDE---ISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDF-S 125
Query: 117 EVEAAR-AINSWVAQETKNNIKDLIATGQVNSRTNLVL---------W------------ 154
EVE AR IN WV TK I L+ TG V+ T LVL W
Sbjct: 126 EVERARFIINDWVKTHTKGMISHLLGTGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRR 185
Query: 155 -LPSTQESIIIITVLS----------SELNAH---ILEVPYKGGNMSMFFLLP-----PF 195
+ S + + +++ + + H ILE+PY G +SMF P P
Sbjct: 186 LFHKSDGSTVSVPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPL 245
Query: 196 ASQDGV--GDILAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVK 253
++ + +++ K + T R + +PKFSL E++L L +LG+
Sbjct: 246 SALTNILSAQLISHWKGNMTRLPRL-----------LVLPKFSLETEVDLRKPLENLGMT 294
Query: 254 DLFSP-GADLSRLTDS---HIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVR 309
D+F P AD + L+D H+A A+ K +++++E G V S+R + P
Sbjct: 295 DMFRPFQADFTSLSDQEPLHVAL--ALQKVKIEVNESGTVASSSTAVIV--SAR-MAPEE 349
Query: 310 YEANHPFLYFLVDKEIQSILFAGVFNEP 337
+ PFL+ + ++LF G EP
Sbjct: 350 IIIDRPFLFVVRHNPTGTVLFMGQVMEP 377
>pdb|4IF8|A Chain A, Structure Of Vaspin
pdb|4IF8|B Chain B, Structure Of Vaspin
Length = 414
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 89/376 (23%), Positives = 161/376 (42%), Gaps = 51/376 (13%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+ F LL L N G+N+F+SP SI A + +T +KQ N K+
Sbjct: 54 DLGFKLLKKLAFYNPGRNIFLSPLSISTAFSMLCLGAQDSTLDEIKQGF----NFRKMPE 109
Query: 61 MNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVK----ECMTAIFPSEIQSMDFGN 116
++++ I L + N +F++ ++ + E + +E +F N
Sbjct: 110 KDLHEGFHYIIHELTQKTQDLKLSIGNTLFIDQRLQPQRKFLEDAKNFYSAETILTNFQN 169
Query: 117 EVEAARAINSWVAQETKNNIKDLIAT---GQVNSRTNLVL----W--------------- 154
A + IN +++Q+T I +LI G V N + W
Sbjct: 170 LEMAQKQINDFISQKTHGKINNLIENIDPGTVMLLANYIFFRARWKHEFDPNVTKEEDFF 229
Query: 155 --------LPSTQESIIIITVLSSELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDILA 206
+P S I +L+ ILE+PY+ N++ F+LP + + +
Sbjct: 230 LEKNSSVKVPMMFRSGIYQVGYDDKLSCTILEIPYQK-NITAIFILP---DEGKLKHLEK 285
Query: 207 ALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRLT 266
L+ D +F R+ + + + V++++P+ +T +L TLS +GV +F DL+++
Sbjct: 286 GLQVD--TFSRW-KTLLSRRVVDVSVPRLHMTGTFDLKKTLSYIGVSKIFEEHGDLTKIA 342
Query: 267 -DSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLE-PVRYEANHPFLYFLVDKE 324
+ G+AVHKA L +DE+G + P+E P+ + + P+L + ++
Sbjct: 343 PHRSLKVGEAVHKAELKMDERGTEGAAGTGA----QTLPMETPLVVKIDKPYLLLIYSEK 398
Query: 325 IQSILFAGVFNEPPNK 340
I S+LF G P K
Sbjct: 399 IPSVLFLGKIVNPIGK 414
>pdb|1YXA|A Chain A, Serpina3n, A Murine Orthologue Of Human Antichymotrypsin
pdb|1YXA|B Chain B, Serpina3n, A Murine Orthologue Of Human Antichymotrypsin
Length = 398
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 96/379 (25%), Positives = 170/379 (44%), Gaps = 56/379 (14%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+F F L L N N+ SP SI AL + NT + + L+ NL +
Sbjct: 33 DFAFSLYKELVLKNPDTNIVFSPLSISAALALVSLGAKGNTLEEILEGLKF--NLTETSE 90
Query: 61 MNVYK-MEKLIQGLRANADSGLTFTSTNKIFVNDKIPV----KECMTAIFPSEIQSMDFG 115
++++ L+Q L D + ++ + +F+ + + +E ++ +E + DF
Sbjct: 91 ADIHQGFGHLLQRLNQPKDQ-VQISTGSALFIEKRQQILTEFQEKAKTLYQAEAFTADFQ 149
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVL---------W-LP--------- 156
+A + IN +V ++T+ IK+L++ ++ RT +VL W +P
Sbjct: 150 QPRQAKKLINDYVRKQTQGMIKELVS--DLDKRTLMVLVNYIYFKAKWKVPFDPLDTFKS 207
Query: 157 ---STQESIIIITVLS-----------SELNAHILEVPYKGGNMSMFFLLPPFASQDGVG 202
+ +I+ ++S EL+ ++E+ Y G N S F+LP Q +
Sbjct: 208 EFYCGKRRPVIVPMMSMEDLTTPYFRDEELSCTVVELKYTG-NASALFILP---DQGRMQ 263
Query: 203 DILAALKKDPTSFKRFTEDSQNLKPV---EIAIPKFSLTQEMNLIPTLSDLGVKDLFSPG 259
+ A+L+ P + +++ +LKP E+ +PKFS++ + +L LS LG++++FS
Sbjct: 264 QVEASLQ--PETLRKW---KNSLKPRMIDELHLPKFSISTDYSLEDVLSKLGIREVFSTQ 318
Query: 260 ADLSRLTDSH-IAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVRYEANHPFLY 318
ADLS +T + + VHKA LD+ E G V S L P+ N PFL
Sbjct: 319 ADLSAITGTKDLRVSQVVHKAVLDVAETGTEAAAATGVKFVPMSAKLYPLTVYFNRPFLI 378
Query: 319 FLVDKEIQSILFAGVFNEP 337
+ D E + F P
Sbjct: 379 MIFDTETEIAPFIAKIANP 397
>pdb|3CVM|A Chain A, High Resolution Structure Of A Stable Plasminogen
Activator Inhibitor Type-1 In Its Protease Cleaved Form
pdb|3CVM|B Chain B, High Resolution Structure Of A Stable Plasminogen
Activator Inhibitor Type-1 In Its Protease Cleaved Form
Length = 392
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 94/388 (24%), Positives = 163/388 (42%), Gaps = 73/388 (18%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+F + + A+K +NV SP+ + L + T+ ++ + + DK
Sbjct: 27 DFGVRVFQQVAQASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKID-DKGMA 85
Query: 61 MNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMT----AIFPSEIQSMDFGN 116
+ + K + G N D ++T+ IFV + + + +F S ++ +DF +
Sbjct: 86 PALRHLYKELMG-PWNKDE---ISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDF-S 140
Query: 117 EVEAAR-AINSWVAQETKNNIKDLIATGQVNSRTNLVL---------W------------ 154
EVE AR IN WV TK I L+ TG V+ T LVL W
Sbjct: 141 EVERARFIINDWVKTHTKGMISHLLGTGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRR 200
Query: 155 -LPSTQESIIIITVLS----------SELNAH---ILEVPYKGGNMSMFFLLP-----PF 195
+ S + + +++ + + H ILE+PY G +SMF P P
Sbjct: 201 LFHKSDGSTVSVPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPL 260
Query: 196 ASQDGV--GDILAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVK 253
++ + +++ K + T R + +PKFSL E++L L +LG+
Sbjct: 261 SALTNILSAQLISHWKGNMTRLPRL-----------LVLPKFSLETEVDLRKPLENLGMT 309
Query: 254 DLFSP-GADLSRLTDS---HIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVR 309
D+F AD + L+D H+A A+ K +++++E G V S+R + P
Sbjct: 310 DMFRQFQADFTSLSDQEPLHVAL--ALQKVKIEVNESGTVASSSTAVIV--SAR-MAPEE 364
Query: 310 YEANHPFLYFLVDKEIQSILFAGVFNEP 337
+ PFL+ + ++LF G EP
Sbjct: 365 IIIDRPFLFVVRHNPTGTVLFMGQVMEP 392
>pdb|1B3K|A Chain A, Plasminogen Activator Inhibitor-1
pdb|1B3K|B Chain B, Plasminogen Activator Inhibitor-1
pdb|1B3K|C Chain C, Plasminogen Activator Inhibitor-1
pdb|1B3K|D Chain D, Plasminogen Activator Inhibitor-1
pdb|1OC0|A Chain A, Plasminogen Activator Inhibitor-1 Complex With Somatomedin
B Domain Of Vitronectin
Length = 379
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 94/388 (24%), Positives = 163/388 (42%), Gaps = 73/388 (18%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+F + + A+K +NV SP+ + L + T+ ++ + + DK
Sbjct: 14 DFGVRVFQQVAQASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKID-DKGMA 72
Query: 61 MNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTA----IFPSEIQSMDFGN 116
+ + K + G N D ++T+ IFV + + + +F S ++ +DF +
Sbjct: 73 PALRHLYKELMG-PWNKDE---ISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDF-S 127
Query: 117 EVEAAR-AINSWVAQETKNNIKDLIATGQVNSRTNLVL---------W------------ 154
EVE AR IN WV TK I L+ TG V+ T LVL W
Sbjct: 128 EVERARFIINDWVKTHTKGMISHLLGTGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRR 187
Query: 155 -LPSTQESIIIITVLS----------SELNAH---ILEVPYKGGNMSMFFLLP-----PF 195
+ S + + +++ + + H ILE+PY G +SMF P P
Sbjct: 188 LFHKSDGSTVSVPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPL 247
Query: 196 ASQDGV--GDILAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVK 253
++ + +++ K + T R + +PKFSL E++L L +LG+
Sbjct: 248 SALTNILSAQLISHWKGNMTRLPRL-----------LVLPKFSLETEVDLRKPLENLGMT 296
Query: 254 DLFSP-GADLSRLTDS---HIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVR 309
D+F AD + L+D H+A A+ K +++++E G V S+R + P
Sbjct: 297 DMFRQFQADFTSLSDQEPLHVAL--ALQKVKIEVNESGTVASSSTAVIV--SAR-MAPEE 351
Query: 310 YEANHPFLYFLVDKEIQSILFAGVFNEP 337
+ PFL+ + ++LF G EP
Sbjct: 352 IIIDRPFLFVVRHNPTGTVLFMGQVMEP 379
>pdb|3UT3|A Chain A, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|B Chain B, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|C Chain C, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|D Chain D, A Novel Pai-i Inhibitor And Its Structural Mechanism
Length = 375
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 94/388 (24%), Positives = 163/388 (42%), Gaps = 73/388 (18%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+F + + A+K +NV SP+ + L + T+ ++ + + DK
Sbjct: 10 DFGVRVFQQVAQASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKID-DKGMA 68
Query: 61 MNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMT----AIFPSEIQSMDFGN 116
+ + K + G N D ++T+ IFV + + + +F S ++ +DF +
Sbjct: 69 PALRHLYKELMG-PWNKDE---ISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDF-S 123
Query: 117 EVEAAR-AINSWVAQETKNNIKDLIATGQVNSRTNLVL---------W------------ 154
EVE AR IN WV TK I L+ TG V+ T LVL W
Sbjct: 124 EVERARFIINDWVKTHTKGMISHLLGTGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRR 183
Query: 155 -LPSTQESIIIITVLS----------SELNAH---ILEVPYKGGNMSMFFLLP-----PF 195
+ S + + +++ + + H ILE+PY G +SMF P P
Sbjct: 184 LFHKSDGSTVSVPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPL 243
Query: 196 ASQDGV--GDILAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVK 253
++ + +++ K + T R + +PKFSL E++L L +LG+
Sbjct: 244 SALTNILSAQLISHWKGNMTRLPRL-----------LVLPKFSLETEVDLRKPLENLGMT 292
Query: 254 DLFSP-GADLSRLTDS---HIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVR 309
D+F AD + L+D H+A A+ K +++++E G V S+R + P
Sbjct: 293 DMFRQFQADFTSLSDQEPLHVAL--ALQKVKIEVNESGTVASSSTAVIV--SAR-MAPEE 347
Query: 310 YEANHPFLYFLVDKEIQSILFAGVFNEP 337
+ PFL+ + ++LF G EP
Sbjct: 348 IIIDRPFLFVVRHNPTGTVLFMGQVMEP 375
>pdb|1DVM|A Chain A, Active Form Of Human Pai-1
pdb|1DVM|B Chain B, Active Form Of Human Pai-1
pdb|1DVM|C Chain C, Active Form Of Human Pai-1
pdb|1DVM|D Chain D, Active Form Of Human Pai-1
pdb|3PB1|I Chain I, Crystal Structure Of A Michaelis Complex Between
Plasminogen Activator Inhibitor-1 And Urokinase-Type
Plasminogen Activator
Length = 379
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 94/388 (24%), Positives = 162/388 (41%), Gaps = 73/388 (18%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+F + + A+K +NV SP+ + L + T+ ++ + + DK
Sbjct: 14 DFGVRVFQQVAQASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKID-DKGMA 72
Query: 61 MNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTA----IFPSEIQSMDFGN 116
+ + K + G N D ++T+ IFV + + + +F S ++ +DF +
Sbjct: 73 PALRHLYKELMG-PWNKDE---ISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDF-S 127
Query: 117 EVEAAR-AINSWVAQETKNNIKDLIATGQVNSRTNLVL---------W------------ 154
EVE AR IN WV TK I L+ TG V T LVL W
Sbjct: 128 EVERARFIINDWVKTHTKGMISHLLGTGAVQQLTRLVLVNALYFNGQWKTPFPDSSTHRR 187
Query: 155 -LPSTQESIIIITVLS----------SELNAH---ILEVPYKGGNMSMFFLLP-----PF 195
+ S + + +++ + + H ILE+PY G +SMF P P
Sbjct: 188 LFHKSDGSTVSVPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPL 247
Query: 196 ASQDGV--GDILAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVK 253
++ + +++ K + T R + +PKFSL E++L L +LG+
Sbjct: 248 SALTNILSAQLISHWKGNMTRLPRL-----------LVLPKFSLETEVDLRKPLENLGMT 296
Query: 254 DLFSP-GADLSRLTDS---HIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVR 309
D+F AD + L+D H+A A+ K +++++E G V S+R + P
Sbjct: 297 DMFRQFQADFTSLSDQEPLHVAL--ALQKVKIEVNESGTVASSSTAVIV--SAR-MAPEE 351
Query: 310 YEANHPFLYFLVDKEIQSILFAGVFNEP 337
+ PFL+ + ++LF G EP
Sbjct: 352 IIIDRPFLFVVRHNPTGTVLFMGQVMEP 379
>pdb|1C5G|A Chain A, Plasminogen Activator Inhibitor-1
Length = 402
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 93/388 (23%), Positives = 163/388 (42%), Gaps = 73/388 (18%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+F + + A+K +NV SP+ + L + T+ ++ + + DK
Sbjct: 37 DFGVRVFQQVAQASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKID-DKGMA 95
Query: 61 MNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTA----IFPSEIQSMDFGN 116
+ + K + G N D ++T+ IFV + + + +F S ++ +DF +
Sbjct: 96 PALRHLYKELMG-PWNKDE---ISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDF-S 150
Query: 117 EVEAAR-AINSWVAQETKNNIKDLIATGQVNSRTNLVL---------W------------ 154
EVE AR IN WV TK I +L+ G V+ T LVL W
Sbjct: 151 EVERARFIINDWVKTHTKGMISNLLGKGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRR 210
Query: 155 -LPSTQESIIIITVLS----------SELNAH---ILEVPYKGGNMSMFFLLP-----PF 195
+ S + + +++ + + H ILE+PY G +SMF P P
Sbjct: 211 LFHKSDGSTVSVPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPL 270
Query: 196 ASQDGV--GDILAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVK 253
++ + +++ K + T R + +PKFSL E++L L +LG+
Sbjct: 271 SALTNILSAQLISHWKGNMTRLPRL-----------LVLPKFSLETEVDLRKPLENLGMT 319
Query: 254 DLFSP-GADLSRLTDS---HIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVR 309
D+F AD + L+D H+A A+ K +++++E G V S+R + P
Sbjct: 320 DMFRQFQADFTSLSDQEPLHVA--QALQKVKIEVNESGTVASSSTAVIV--SAR-MAPEE 374
Query: 310 YEANHPFLYFLVDKEIQSILFAGVFNEP 337
+ PFL+ + ++LF G EP
Sbjct: 375 IIMDRPFLFVVRHNPTGTVLFMGQVMEP 402
>pdb|2R9Y|A Chain A, Structure Of Antiplasmin
Length = 430
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 92/374 (24%), Positives = 159/374 (42%), Gaps = 64/374 (17%)
Query: 2 FTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTM 61
FT DL +++ + N+ +SP S+ AL + T +L +VL M
Sbjct: 28 FTTDLFSLVAQTSTSSNLVLSPLSVALALSHLALGAQNQTLHSLHRVLH----------M 77
Query: 62 NVYK-MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVK----ECMTAIFPSEIQSMDFGN 116
N + L+ N G T +I++ P+K E +F ++ + G
Sbjct: 78 NTGSCLPHLLSHFYQNLGPG-TIRLAARIYLQKGFPIKDDFLEQSERLFGAKPVKLT-GK 135
Query: 117 EVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVL---------WL----PS-TQE-- 160
+ E IN WV + T+ I+D ++ ++ T L+L W PS TQ+
Sbjct: 136 QEEDLANINQWVKEATEGKIEDFLS--ELPDSTVLLLLNAIHFHGFWRTKFDPSLTQKDF 193
Query: 161 ---------SIIIITVLSSELNAHILE--------VPYKGGNMSMFFLLPPFASQDGVGD 203
S+ ++ +S L +LE P+K NMS ++P + + V +
Sbjct: 194 FHLDERFTVSVDMMHAVSYPLRWFLLEQPEIQVAHFPFKN-NMSFVVVMPTYFEWN-VSE 251
Query: 204 ILAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLS 263
+LA L D E +P ++ +PK L Q+++L+ TLS LG+++LF G DL
Sbjct: 252 VLANLTWDTLYHPSLQE-----RPTKVWLPKLHLQQQLDLVATLSQLGLQELFQ-GPDLR 305
Query: 264 RLTDSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVRYEANHPFLYFLVDK 323
+++ ++ H++ ++L E G V R S + N PFL+F+++
Sbjct: 306 GISEQNLVVSSVQHQSTMELSEAGVEAAAATSVAMNRMSLS----SFTVNRPFLFFIMED 361
Query: 324 EIQSILFAGVFNEP 337
I LF G P
Sbjct: 362 TIGVPLFVGSVRNP 375
>pdb|1DVN|A Chain A, Latent Form Of Plasminogen Activator Inhibitor-1 (Pai-1)
pdb|1LJ5|A Chain A, 1.8a Resolution Structure Of Latent Plasminogen Activator
Inhibitor-1(Pai-1)
Length = 379
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 93/388 (23%), Positives = 163/388 (42%), Gaps = 73/388 (18%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+F + + A+K +NV SP+ + L + T+ ++ + + DK
Sbjct: 14 DFGVRVFQQVAQASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKID-DKGMA 72
Query: 61 MNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMT----AIFPSEIQSMDFGN 116
+ + K + G N D ++T+ IFV + + + +F S ++ +DF +
Sbjct: 73 PALRHLYKELMG-PWNKDE---ISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDF-S 127
Query: 117 EVEAAR-AINSWVAQETKNNIKDLIATGQVNSRTNLVL---------W------------ 154
EVE AR IN WV TK I +L+ G V+ T LVL W
Sbjct: 128 EVERARFIINDWVKTHTKGMISNLLGKGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRR 187
Query: 155 -LPSTQESIIIITVLS----------SELNAH---ILEVPYKGGNMSMFFLLP-----PF 195
+ S + + +++ + + H ILE+PY G +SMF P P
Sbjct: 188 LFHKSDGSTVSVPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPL 247
Query: 196 ASQDGV--GDILAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVK 253
++ + +++ K + T R + +PKFSL E++L L +LG+
Sbjct: 248 SALTNILSAQLISHWKGNMTRLPRL-----------LVLPKFSLETEVDLRKPLENLGMT 296
Query: 254 DLFSP-GADLSRLTDS---HIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVR 309
D+F AD + L+D H+A A+ K +++++E G V S+R + P
Sbjct: 297 DMFRQFQADFTSLSDQEPLHVA--QALQKVKIEVNESGTVASSSTAVIV--SAR-MAPEE 351
Query: 310 YEANHPFLYFLVDKEIQSILFAGVFNEP 337
+ PFL+ + ++LF G EP
Sbjct: 352 IIMDRPFLFVVRHNPTGTVLFMGQVMEP 379
>pdb|4AQH|A Chain A, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
pdb|4AQH|B Chain B, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
pdb|4AQH|C Chain C, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
Length = 383
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 93/388 (23%), Positives = 163/388 (42%), Gaps = 73/388 (18%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+F + + A+K +NV SP+ + L + T+ ++ + + DK
Sbjct: 18 DFGVRVFQQVAQASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKID-DKGMA 76
Query: 61 MNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTA----IFPSEIQSMDFGN 116
+ + K + G N D ++T+ IFV + + + +F S ++ +DF +
Sbjct: 77 PALRHLYKELMG-PWNKDE---ISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDF-S 131
Query: 117 EVEAAR-AINSWVAQETKNNIKDLIATGQVNSRTNLVL---------W------------ 154
EVE AR IN WV TK I +L+ G V+ T LVL W
Sbjct: 132 EVERARFIINDWVKTHTKGMISNLLGKGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRR 191
Query: 155 -LPSTQESIIIITVLS----------SELNAH---ILEVPYKGGNMSMFFLLP-----PF 195
+ S + + +++ + + H ILE+PY G +SMF P P
Sbjct: 192 LFHKSDGSTVSVPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPL 251
Query: 196 ASQDGV--GDILAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVK 253
++ + +++ K + T R + +PKFSL E++L L +LG+
Sbjct: 252 SALTNILSAQLISHWKGNMTRLPRL-----------LVLPKFSLETEVDLRKPLENLGMT 300
Query: 254 DLFSP-GADLSRLTDS---HIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVR 309
D+F AD + L+D H+A A+ K +++++E G V S+R + P
Sbjct: 301 DMFRQFQADFTSLSDQEPLHVA--QALQKVKIEVNESGTVASSSTAVIV--SAR-MAPEE 355
Query: 310 YEANHPFLYFLVDKEIQSILFAGVFNEP 337
+ PFL+ + ++LF G EP
Sbjct: 356 IIMDRPFLFVVRHNPTGTVLFMGQVMEP 383
>pdb|1A7C|A Chain A, Human Plasminogen Activator Inhibitor Type-1 In Complex
With A Pentapeptide
Length = 379
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 93/388 (23%), Positives = 163/388 (42%), Gaps = 73/388 (18%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+F + + A+K +NV SP+ + L + T+ ++ + + DK
Sbjct: 14 DFGVRVFQQVAQASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKID-DKGMA 72
Query: 61 MNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMT----AIFPSEIQSMDFGN 116
+ + K + G N D ++T+ IFV + + + +F S ++ +DF +
Sbjct: 73 PALRHLYKELMG-PWNKDE---ISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDF-S 127
Query: 117 EVEAAR-AINSWVAQETKNNIKDLIATGQVNSRTNLVL---------W------------ 154
EVE AR IN WV TK I +L+ G V+ T LVL W
Sbjct: 128 EVERARFIINDWVKTHTKGMISNLLGKGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRR 187
Query: 155 -LPSTQESIIIITVLS----------SELNAH---ILEVPYKGGNMSMFFLLP-----PF 195
+ S + + +++ + + H ILE+PY G +SMF P P
Sbjct: 188 LFHKSDGSTVSVPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPL 247
Query: 196 ASQDGV--GDILAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVK 253
++ + +++ K + T R + +PKFSL E++L L +LG+
Sbjct: 248 SALTNILSAQLISHWKGNMTRLPRL-----------LVLPKFSLETEVDLRKPLENLGMT 296
Query: 254 DLFSP-GADLSRLTDS---HIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVR 309
D+F AD + L+D H+A A+ K +++++E G V S+R + P
Sbjct: 297 DMFRQFQADFTSLSDQEPLHVA--QALQKVKIEVNESGTVESSSTAVIV--SAR-MAPEE 351
Query: 310 YEANHPFLYFLVDKEIQSILFAGVFNEP 337
+ PFL+ + ++LF G EP
Sbjct: 352 IIMDRPFLFVVRHNPTGTVLFMGQVMEP 379
>pdb|3H5C|A Chain A, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 423
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 86/371 (23%), Positives = 151/371 (40%), Gaps = 56/371 (15%)
Query: 2 FTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTM 61
F F LL ++ + G VF SPF + A+ + TE +K+ L +L L
Sbjct: 61 FGFSLLRKISMRHDGNMVF-SPFGMSLAMTGLMLGATGPTETQIKRGL----HLQALKPT 115
Query: 62 NVYKMEKLIQGLRANADSGLTF--TSTNKIFVNDKIPVKECM----TAIFPSEIQSMDFG 115
+ L +GLR L T + F++ VKE F +E M+F
Sbjct: 116 KPGLLPSLFKGLRETLSRNLELGLTQGSFAFIHKDFDVKETFFNLSKRYFDTECVPMNFR 175
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVL---------WL----------- 155
N +A R +N ++ +ET+ I L ++N T L+L WL
Sbjct: 176 NASQAKRLMNHYINKETRGKIPKLF--DEINPETKLILVDYILFKGKWLTPFDPVFTEVD 233
Query: 156 ------------PSTQESIIIITVLSSELNAHILEVPYKGGNMSMFFLLPPFASQDGVGD 203
P + + H+L++PY+G N +M +L + +GD
Sbjct: 234 TFHLDKYKTIKVPMMYGAGKFASTFDKNFRCHVLKLPYQG-NATMLVVL-----MEKMGD 287
Query: 204 ILAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLS 263
LA T + + +E+ PKF L Q+ + L +G++ +FSP ADLS
Sbjct: 288 HLALEDYLTTDLVETWLRNMKTRNMEVFFPKFKLDQKYEMHELLRQMGIRRIFSPFADLS 347
Query: 264 RL--TDSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVRYEANHPFLYFLV 321
L T ++ + + +++DE+G + + ++ + PV + + PF + +
Sbjct: 348 ELSATGRNLQVSRVLQRTVIEVDERG--TEAVAGILSEITAYSMPPV-IKVDRPFHFMIY 404
Query: 322 DKEIQSILFAG 332
++ +LF G
Sbjct: 405 EETSGMLLFLG 415
>pdb|3Q02|A Chain A, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q02|B Chain B, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q03|A Chain A, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q03|B Chain B, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation
Length = 379
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 92/388 (23%), Positives = 162/388 (41%), Gaps = 73/388 (18%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+F + + A+K +NV SP+ + L + T+ ++ + + DK
Sbjct: 14 DFGVRVFQQVAQASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKID-DKGMA 72
Query: 61 MNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMT----AIFPSEIQSMDFGN 116
+ + K + G N D ++T+ IFV + + + +F S ++ +DF +
Sbjct: 73 PALRHLYKELMG-PWNKDE---ISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDF-S 127
Query: 117 EVEAAR-AINSWVAQETKNNIKDLIATGQVNSRTNLVL---------------------- 153
EVE AR IN WV TK I +L+ G V+ T LVL
Sbjct: 128 EVERARFIINDWVKTHTKGMISNLLGKGAVDQLTRLVLVNALYFNGQFKTPFPDSSTHRR 187
Query: 154 WLPSTQESIIIITVLS----------SELNAH---ILEVPYKGGNMSMFFLLP-----PF 195
+ S + + +++ + + H ILE+PY G +SMF P P
Sbjct: 188 LFHKSDGSTVSVPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPL 247
Query: 196 ASQDGV--GDILAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVK 253
++ + +++ K + T R + +PKFSL E++L L +LG+
Sbjct: 248 SALTNILSAQLISHWKGNMTRLPRL-----------LVLPKFSLETEVDLRKPLENLGMT 296
Query: 254 DLFSP-GADLSRLTDS---HIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVR 309
D+F AD + L+D H+A A+ K +++++E G V S+R + P
Sbjct: 297 DMFRQFQADFTSLSDQEPLHVA--QALQKVKIEVNESGTVASSSTAVIV--SAR-MAPEE 351
Query: 310 YEANHPFLYFLVDKEIQSILFAGVFNEP 337
+ PFL+ + ++LF G EP
Sbjct: 352 IIMDRPFLFVVRHNPTGTVLFMGQVMEP 379
>pdb|3PZF|A Chain A, 1.75a Resolution Structure Of Serpin-2 From Anopheles
Gambiae
Length = 397
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 87/383 (22%), Positives = 160/383 (41%), Gaps = 61/383 (15%)
Query: 4 FDLLTVLN-NANKGKNVFVSPFS-------IYQALLTAYFISNKNTEANLKQVLRLPENL 55
FDL+ V N NV +SPFS IY+A T++ + NT+ L V++
Sbjct: 25 FDLMFVKEIFKNHNSNVVLSPFSVKILLTLIYEASDTSFGNAVSNTKRELSSVIQN---- 80
Query: 56 DKLDTMNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPV----KECMTAIFPSEIQS 111
D +D Y + L + N D L + FV+D I V ++ + + ++
Sbjct: 81 DNIDHTRSYYKQLLESAQQDNKDYDLNIATN--FFVDDFIEVINKYQQIANTHYHAMLEK 138
Query: 112 MDFGNEVEAARAINSWVAQETKNNIKDLIA----TGQVNSRTNLV----LW---LPSTQE 160
+ + N + A IN+WV++ T +++++ G V + N++ LW P
Sbjct: 139 VSYSNPTQTAATINNWVSEHTNGRLREIVTPDSLEGAVITLVNVIYFKGLWTYPFPEVAN 198
Query: 161 SIIIITVL--------------------SSELNAHILEVPYKGGNMSMFFLLP-PFASQD 199
++ S++L A IL +PY+G ++M+F+LP P + +
Sbjct: 199 NVKPFYGTRGKPTNAQYMEQNGQFYYDNSADLGAQILRLPYRGNKLAMYFILPNPDNTVN 258
Query: 200 GVGDILAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPG 259
V D + + + + E+++ V + +PKF L L +G++++FS
Sbjct: 259 QVLDRINSASLHQALW--YMEENE----VNVTLPKFKFDFSEQLNEPLQQVGIREIFSQN 312
Query: 260 ADL-----SRLTDSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVRYEANH 314
A L R + KA + ++E G + + AN
Sbjct: 313 ASLPLLARGRGARDEVRVSRIFQKAGITINELGSEAYAATEIQLVNKFGGDGVQIFNANR 372
Query: 315 PFLYFLVDKEIQSILFAGVFNEP 337
PF++F+ D+ + ++LFAG P
Sbjct: 373 PFIFFIEDETLGTMLFAGKIENP 395
>pdb|3F1S|A Chain A, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 385
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 89/373 (23%), Positives = 154/373 (41%), Gaps = 60/373 (16%)
Query: 2 FTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTM 61
F F LL ++ + G VF SPF + A+ + TE +K+ L +L L
Sbjct: 23 FGFSLLRKISMRHDGNMVF-SPFGMSLAMTGLMLGATGPTETQIKRGL----HLQALKPT 77
Query: 62 NVYKMEKLIQGLRA----NADSGLTFTSTNKIFVNDKIPVKECM----TAIFPSEIQSMD 113
+ L +GLR N + GLT S F++ VKE F +E M+
Sbjct: 78 KPGLLPSLFKGLRETLSRNLELGLTQGSF--AFIHKDFDVKETFFNLSKRYFDTECVPMN 135
Query: 114 FGNEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVL---------WL--------- 155
F N +A R +N ++ +ET+ I L ++N T L+L WL
Sbjct: 136 FRNASQAKRLMNHYINKETRGKIPKLF--DEINPETKLILVDYILFKGKWLTPFDPVFTE 193
Query: 156 --------------PSTQESIIIITVLSSELNAHILEVPYKGGNMSMFFLLPPFASQDGV 201
P + + H+L++PY+G N +M +L + +
Sbjct: 194 VDTFHLDKYKTIKVPMMYGAGKFASTFDKNFRCHVLKLPYQG-NATMLVVL-----MEKM 247
Query: 202 GDILAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGAD 261
GD LA T + + +E+ PKF L Q+ + L +G++ +FSP AD
Sbjct: 248 GDHLALEDYLTTDLVETWLRNMKTRNMEVFFPKFKLDQKYEMHELLRQMGIRRIFSPFAD 307
Query: 262 LSRL--TDSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVRYEANHPFLYF 319
LS L T ++ + + +++DE+G + + ++ + PV + + PF +
Sbjct: 308 LSELSATGRNLQVSRVLQRTVIEVDERG--TEAVAGILSEITAYSMPPV-IKVDRPFHFM 364
Query: 320 LVDKEIQSILFAG 332
+ ++ +LF G
Sbjct: 365 IYEETSGMLLFLG 377
>pdb|2V95|A Chain A, Struture Of Corticosteroid-Binding Globulin In Complex
With Cortisol
Length = 371
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 94/373 (25%), Positives = 157/373 (42%), Gaps = 56/373 (15%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+F F+L L N KN +SP SI AL S A + + L NL +
Sbjct: 15 DFAFNLYQRLVALNPDKNTLISPVSISMALAMVSLGS-----AQTQSLQSLGFNLTETSE 69
Query: 61 MNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTA----IFPSEIQSMDFGN 116
+++ + + L +D+GL N +F+ K+ +K+ A + SE ++DF +
Sbjct: 70 AEIHQSFQYLNYLLKQSDTGLEMNMGNAMFLLQKLKLKDSFLADVKQYYESEALAIDFED 129
Query: 117 EVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVL---------W------------- 154
+A++ IN V +T+ I+ + + ++S + +L W
Sbjct: 130 WTKASQQINQHVKDKTQGKIEHVFS--DLDSPASFILVNYIFLRGIWELPFSPENTREED 187
Query: 155 ----------LPSTQESIIIITVLSSELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDI 204
+P +S I S ++++ Y G N + FF+LP Q + +
Sbjct: 188 FYVNETSTVKVPMMVQSGSIGYFRDSVFPCQLIQMDYVG-NGTAFFILP---DQGQMDTV 243
Query: 205 LAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSR 264
+AAL +D + R+ + + V + IPKFS++ +L L DL +KDL + +D S
Sbjct: 244 IAALSRD--TIDRWGK-LMTPRQVNLYIPKFSMSDTYDLKDVLEDLNIKDLLTNQSDFSG 300
Query: 265 LTDSHIAFGDAVHKARLDLDEQGXXXXXXXXV-FAFRSSRPLEPVRYEANHPFLYFLVDK 323
T VHKA L LDE RS EP+ + N PF+ L DK
Sbjct: 301 NTKDVPLTLTMVHKAMLQLDEGNVLPNSTNGAPLHLRS----EPLDIKFNKPFILLLFDK 356
Query: 324 -EIQSILFAGVFN 335
S++ + V N
Sbjct: 357 FTWSSLMMSQVVN 369
>pdb|1XQG|A Chain A, 3.10 A Crystal Structure Of Maspin, Space Group P 4 21 2
pdb|1XQG|B Chain B, 3.10 A Crystal Structure Of Maspin, Space Group P 4 21 2
pdb|1XQJ|A Chain A, 3.10 A Crystal Structure Of Maspin, Space Group I 4 2 2
Length = 389
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 90/386 (23%), Positives = 175/386 (45%), Gaps = 71/386 (18%)
Query: 2 FTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLD-- 59
F DL L+ NV SP ++ +L A + +T + QVL EN+ +
Sbjct: 25 FAVDLFKQLSEKEPLGNVLFSPIALSTSLSLAQVGAKGDTANEIGQVLHF-ENVKDVPFG 83
Query: 60 ----TMNVYKME-----KLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTAIFPSEIQ 110
T +V K+ KLI+ R D L ++ + + K P + E++
Sbjct: 84 FQTVTSDVNKLSSFYSLKLIK--RLYVDKSLNLST--EFISSTKRP--------YAKELE 131
Query: 111 SMDFGNEVEAARA-INSWVAQETKNNIKDLIATGQVNSRTNLVL---------WL----- 155
++DF +++E + IN+ + T + ++++A VN +T +++ W+
Sbjct: 132 TVDFKDKLEETKGQINNSIKDLTDGHFENILADNSVNDQTKILVVNAAYFVGKWMKKFSE 191
Query: 156 PSTQESIIIITVLSSE------------------LNAHILEVPYKGGNMSMFFLLPPFAS 197
T+ES + ++ +N+ I+E+P++ ++SMF LLP
Sbjct: 192 SETKESPFRVNKTDTKPVQMMNMEATFSMGNIDSINSKIIELPFQNKHLSMFILLPKDVE 251
Query: 198 QDGVGDILAALKK--DPTSFKRFTEDSQ--NLKPVEIAIPKFSLTQEMNLIPTLSDLGVK 253
+ G L ++K + S ++T S N K V+++IPKF + + ++ +L +LG+K
Sbjct: 252 DESTG--LEKIEKQLNSESLSQWTNPSTMANAK-VKLSIPKFKVEKMIDPKASLENLGLK 308
Query: 254 DLFSPG-ADLSRLTDSH-IAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVRYE 311
+FS +D S ++++ +A + +HK L++ E G + L
Sbjct: 309 HIFSEDTSDFSGMSETKGVALSNVIHKVSLEITEDGGDSIEVPGARILQHKDEL-----N 363
Query: 312 ANHPFLYFLVDKEIQSILFAGVFNEP 337
A+HPF+Y + + ++I+F G F+ P
Sbjct: 364 ADHPFIYIIRHNKTRNIIFFGKFSSP 389
>pdb|1JMO|A Chain A, Crystal Structure Of The Heparin Cofactor Ii-S195a
Thrombin Complex
Length = 480
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/378 (21%), Positives = 160/378 (42%), Gaps = 54/378 (14%)
Query: 1 EFTFDLLTVL-NNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLD 59
+F F+L VL + N N+F++P I A+ T + +L + ++
Sbjct: 113 KFAFNLYRVLKDQVNTFDNIFIAPVGISTAMGMISLGLKGETHEQVHSILHFKDFVNASS 172
Query: 60 TMNVYKMEKLIQGLRAN---ADSGLTFTSTNKIFVNDKIPV----KECMTAIFPSEIQSM 112
+ + L + L + G T S N +++ + P+ K + + +E Q
Sbjct: 173 KYEITTIHNLFRKLTHRLFRRNFGYTLRSVNDLYIQKQFPILLDFKTKVREYYFAEAQIA 232
Query: 113 DFGNEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVL---------WLPS------ 157
DF + ++ N+ + + TK IKD A ++ T +++ W+
Sbjct: 233 DFSDPAFISKT-NNHIMKLTKGLIKD--ALENIDPATQMMILNCIYFKGSWVNKFPVEMT 289
Query: 158 -------TQESIIIITVLSS----------ELNAHILEVPYKGGNMSMFFLLPPFASQDG 200
+ ++ ++++ + EL+ IL++ Y GG +SM ++P S G
Sbjct: 290 HNHNFRLNEREVVKVSMMQTKGNFLAANDQELDCDILQLEYVGG-ISMLIVVPHKMS--G 346
Query: 201 VGDILAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGA 260
+ + A L P +R+ + N + E+ +PKF L + NL+ +L +G++ LF
Sbjct: 347 MKTLEAQLT--PRVVERWQKSMTN-RTREVLLPKFKLEKNYNLVESLKLMGIRMLFDKNG 403
Query: 261 DLSRLTDSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEP-VRYEANHPFLYF 319
+++ ++D IA H+ + ++E+G V PL VR+ + PFL+
Sbjct: 404 NMAGISDQRIAIDLFKHQGTITVNEEGTQATTVTTV----GFMPLSTQVRFTVDRPFLFL 459
Query: 320 LVDKEIQSILFAGVFNEP 337
+ + +LF G P
Sbjct: 460 IYEHRTSCLLFMGRVANP 477
>pdb|1JMJ|A Chain A, Crystal Structure Of Native Heparin Cofactor Ii
pdb|1JMJ|B Chain B, Crystal Structure Of Native Heparin Cofactor Ii
Length = 480
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/378 (21%), Positives = 160/378 (42%), Gaps = 54/378 (14%)
Query: 1 EFTFDLLTVL-NNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLD 59
+F F+L VL + N N+F++P I A+ T + +L + ++
Sbjct: 113 KFAFNLYRVLKDQVNTFDNIFIAPVGISTAMGMISLGLKGETHEQVHSILHFKDFVNASS 172
Query: 60 TMNVYKMEKLIQGLRAN---ADSGLTFTSTNKIFVNDKIPV----KECMTAIFPSEIQSM 112
+ + L + L + G T S N +++ + P+ K + + +E Q
Sbjct: 173 KYEITTIHNLFRKLTHRLFRRNFGYTLRSVNDLYIQKQFPILLDFKTKVREYYFAEAQIA 232
Query: 113 DFGNEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVL---------WLPS------ 157
DF + ++ N+ + + TK IKD A ++ T +++ W+
Sbjct: 233 DFSDPAFISKT-NNHIMKLTKGLIKD--ALENIDPATQMMILNCIYFKGSWVNKFPVEMT 289
Query: 158 -------TQESIIIITVLSS----------ELNAHILEVPYKGGNMSMFFLLPPFASQDG 200
+ ++ ++++ + EL+ IL++ Y GG +SM ++P S G
Sbjct: 290 HNHNFRLNEREVVKVSMMQTKGNFLAANDQELDCDILQLEYVGG-ISMLIVVPHKMS--G 346
Query: 201 VGDILAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGA 260
+ + A L P +R+ + N + E+ +PKF L + NL+ +L +G++ LF
Sbjct: 347 MKTLEAQLT--PRVVERWQKSMTN-RTREVLLPKFKLEKNYNLVESLKLMGIRMLFDKNG 403
Query: 261 DLSRLTDSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEP-VRYEANHPFLYF 319
+++ ++D IA H+ + ++E+G V PL VR+ + PFL+
Sbjct: 404 NMAGISDQRIAIDLFKHQGTITVNEEGTQATTVTTV----GFMPLSTQVRFTVDRPFLFL 459
Query: 320 LVDKEIQSILFAGVFNEP 337
+ + +LF G P
Sbjct: 460 IYEHRTSCLLFMGRVANP 477
>pdb|3R4L|A Chain A, Human Very Long Half Life Plasminogen Activator Inhibitor
Type-1
Length = 379
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 92/388 (23%), Positives = 162/388 (41%), Gaps = 73/388 (18%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+F + + A+K +NV SP+ + L + T+ ++ + + DK
Sbjct: 14 DFGVRVFQQVAQASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKID-DKGMA 72
Query: 61 MNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTA----IFPSEIQSMDFGN 116
+ + K + G N D ++T+ IFV + + + +F S ++ +DF +
Sbjct: 73 PALRHLYKELMG-PWNKDE---ISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDF-S 127
Query: 117 EVEAAR-AINSWVAQETKNNIKDLIATGQVNSRTNLVL---------W------------ 154
EVE AR IN WV TK I +L+ G V+ T LVL W
Sbjct: 128 EVERARFIINDWVKTHTKGMISNLLGKGAVDQLTRLVLVNALYFNGCWKTPFPDSSTHRR 187
Query: 155 -LPSTQESIIIITVLS----------SELNAH---ILEVPYKGGNMSMFFLLP-----PF 195
+ S + + +++ + + H ILE+PY G +SMF P P
Sbjct: 188 LFHKSDGSTVSVPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPL 247
Query: 196 ASQDGV--GDILAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVK 253
++ + +++ K + T R + +PKFSL E++L L +LG+
Sbjct: 248 SALTNILSAQLISHWKGNMTRLPRL-----------LVLPKFSLETEVDLRKPLENLGMT 296
Query: 254 DLFSP-GADLSRLTDS---HIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVR 309
D+F AD + L+D H+A A+ K +++++E V S+R + P
Sbjct: 297 DMFRQFQADFTSLSDQEPLHVA--QALQKVKIEVNESCTVASSSTAVIV--SAR-MAPEE 351
Query: 310 YEANHPFLYFLVDKEIQSILFAGVFNEP 337
+ PFL+ + ++LF G EP
Sbjct: 352 IIMDRPFLFVVRHNPTGTVLFMGQVMEP 379
>pdb|4AFX|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Zpi In I2
Space Group
pdb|4AJU|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Zpi In P41
Space Group
Length = 387
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 135/328 (41%), Gaps = 57/328 (17%)
Query: 2 FTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTM 61
F F LL ++ + G VF SPF + A+ + TE +K+ L +L L
Sbjct: 61 FGFSLLRKISMRHDGNMVF-SPFGMSLAMTGLMLGATGPTETQIKRGL----HLQALKPT 115
Query: 62 NVYKMEKLIQGLRA----NADSGLTFTSTNKIFVNDKIPVKECM----TAIFPSEIQSMD 113
+ L +GLR N + GLT S F++ VKE F +E M+
Sbjct: 116 KPGLLPSLFKGLRETLSRNLELGLTQGSF--AFIHKDFDVKETFFNLSKRYFDTECVPMN 173
Query: 114 FGNEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVL---------WL--------- 155
F N +A R +N ++ +ET+ I L ++N T L+L WL
Sbjct: 174 FRNASQAKRLMNHYINKETRGKIPKLF--DEINPETKLILVDYILFKGKWLTPFDPVFTE 231
Query: 156 --------------PSTQESIIIITVLSSELNAHILEVPYKGGNMSMFFLLPPFASQDGV 201
P + + H+L++PY+G N +M +L + +
Sbjct: 232 VDTFHLDKYKTIKVPMMYGAGKFASTFDKNFRCHVLKLPYQG-NATMLVVL-----MEKM 285
Query: 202 GDILAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGAD 261
GD LA T + + +E+ PKF L Q+ + L +G++ +FSP AD
Sbjct: 286 GDHLALEDYLTTDLVETWLRNMKTRNMEVFFPKFKLDQKYEMHELLRQMGIRRIFSPFAD 345
Query: 262 LSRL--TDSHIAFGDAVHKARLDLDEQG 287
LS L T ++ + + +++DE+G
Sbjct: 346 LSELSATGRNLQVSRVLQRTVIEVDERG 373
>pdb|3F02|A Chain A, Cleaved Human Neuroserpin
pdb|3F02|B Chain B, Cleaved Human Neuroserpin
Length = 359
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/333 (23%), Positives = 140/333 (42%), Gaps = 58/333 (17%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+ + ++ L + +N+ SP SI A+ + +T+ ++ + D L
Sbjct: 25 DLSVNMYNRLRATGEDENILFSPLSIALAMGMMELGAQGSTQKEIRHSM----GYDSLKN 80
Query: 61 MNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKE----CMTAIFPSEIQSMDFGN 116
+ K + +S N +FV + V E M F + + +DF
Sbjct: 81 GEEFSFLKEFSNMVTAKESQYVMKIANSLFVQNGFHVNEEFLQMMKKYFNAAVNHVDFSQ 140
Query: 117 EVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVL---------W------------- 154
V A IN WV T N +KDL++ ++ T L L W
Sbjct: 141 NVAVANYINKWVENNTNNLVKDLVSPRDFDAATYLALINAVYFKGNWKSQFRPENTRTFS 200
Query: 155 LPSTQESIIIITVL--------------SSELNA--HILEVPYKGGNMSMFFLLPPFASQ 198
ES + I ++ S+E +LE+PY+G +SM +L S+
Sbjct: 201 FTKDDESEVQIPMMYQQGEFYYGEFSDGSNEAGGIYQVLEIPYEGDEISMMLVL----SR 256
Query: 199 DGVGDILAALKKDPTSFKRFTEDSQN---LKPVEIAIPKFSLTQEMNLIPTLSDLGVKDL 255
V LA L +P + E+ N + VE+ +P+F++ QE++L L LG+ ++
Sbjct: 257 QEVP--LATL--EPLVKAQLVEEWANSVKKQKVEVYLPRFTVEQEIDLKDVLKALGITEI 312
Query: 256 FSPGADLSRLTDS-HIAFGDAVHKARLDLDEQG 287
F A+L+ L+D+ I A+HK+ L+++E+G
Sbjct: 313 FIKDANLTGLSDNKEIFLSKAIHKSFLEVNEEG 345
>pdb|3OZQ|A Chain A, Crystal Structure Of Serpin48, Which Is A Highly Specific
Serpin In The Insect Tenebrio Molitor
Length = 376
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 162/357 (45%), Gaps = 61/357 (17%)
Query: 18 NVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTMNVYKMEKLIQGLRANA 77
N VSPFS L A +T ++QVL + +K + + KL
Sbjct: 33 NFLVSPFSAATLLALAQSGCRGDTAEEIRQVLHFVGDREKAEGAVKEVLSKL-------T 85
Query: 78 DSGLTFTSTNKIFVNDKIPVKE----CMTAIFPSEIQSMDFGNEVEAARAINSWVAQETK 133
+ T + NKI+V V+E ++ ++ +++DF + +AA+ +N+WV ++T+
Sbjct: 86 NEEYTLHTANKIYVKTNFSVREEFQKIAVEVYGAQSENVDFSEKNDAAKLMNAWVEEQTQ 145
Query: 134 NNIKDLIATGQVNSRTNLVL---------WL--------------PSTQESIIIITVLSS 170
+ I++L+ +N+ T +VL WL S +E + + T+
Sbjct: 146 HKIQNLVDPEILNNLTRVVLINALYFNAKWLVPFPPFHTRKSDFHKSAKEVVQVDTMYLD 205
Query: 171 E----------LNAHILEVPYKGGNMSMFFLLPPFASQ-DGVGDILAALKKDPTSFKRFT 219
E L+A +LE+P+KGG S+ +L ++Q +G+ + + +K+ F
Sbjct: 206 EQYFNYYECHHLDAKLLELPFKGG-ASLTIVL---SNQIEGLVSLESKIKRS------FL 255
Query: 220 EDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRLTDSH--IAFGDAVH 277
+ + V +A+PKF + ++ L LGVK F ADLS + + + V
Sbjct: 256 PHNLTKQLVNVALPKFKIESTVDFKKVLKKLGVKKAFGDEADLSGIAGEKGDLVISNIVQ 315
Query: 278 KARLDLDEQGXXXXXXXXVFAF--RSSRPLEPVRYEANHPFLYFLVDKEIQSILFAG 332
K+ +D+ E+G + + P P ++ +HPF++++ K + ILFAG
Sbjct: 316 KSFIDVSEEGVEAAAATYIPVILPEMALPDSPKQFIVDHPFIFYIKVKGM--ILFAG 370
>pdb|7API|A Chain A, The S Variant Of Human Alpha1-Antitrypsin, Structure And
Implications For Function And Metabolism
pdb|8API|A Chain A, The S Variant Of Human Alpha1-antitrypsin, Structure And
Implications For Function And Metabolism
pdb|9API|A Chain A, The S Variant Of Human Alpha1-Antitrypsin, Structure And
Implications For Function And Metabolism
Length = 347
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 149/323 (46%), Gaps = 46/323 (14%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
EF F L L + + N+F SP SI A + +T + + L NL ++
Sbjct: 21 EFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNF--NLTEIPE 78
Query: 61 MNVYK-MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVK----ECMTAIFPSEIQSMDFG 115
+++ ++L++ L DS L T+ N +F+++ + + E + ++ SE +++FG
Sbjct: 79 AQIHEGFQELLRTLN-QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFG 137
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVLWL------------PSTQESII 163
+ EA + IN +V + T+ I DL+ ++ LV ++ T+E
Sbjct: 138 DTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDF 197
Query: 164 IITVLSS------------------ELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDIL 205
+ +++ +L++ +L + Y G ++FFL + + +
Sbjct: 198 HVDQVTTVKVPMMKRLGMFNIQHCKKLSSWVLLMKYLGNATAIFFL----PDEGKLQHLE 253
Query: 206 AALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRL 265
L D + +F E+ ++ + + +PK S+T +L L LG+ +FS GADLS +
Sbjct: 254 NELTHDIIT--KFLEN-EDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSNGADLSGV 310
Query: 266 TDSH-IAFGDAVHKARLDLDEQG 287
T+ + AVHKA L +DE+G
Sbjct: 311 TEEAPLKLSKAVHKAVLTIDEKG 333
>pdb|3NDD|A Chain A, Cleaved Antitrypsin With P10 Pro, And P9-P6 Asp
Length = 343
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 149/323 (46%), Gaps = 46/323 (14%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
EF F L L + + N+F SP SI A + +T + + L NL ++
Sbjct: 17 EFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNF--NLTEIPE 74
Query: 61 MNVYK-MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVK----ECMTAIFPSEIQSMDFG 115
+++ ++L++ L DS L T+ N +F+++ + + E + ++ SE +++FG
Sbjct: 75 AQIHEGFQELLRTLN-QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFG 133
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVLWL------------PSTQESII 163
+ EA + IN +V + T+ I DL+ ++ LV ++ T+E
Sbjct: 134 DTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDF 193
Query: 164 IITVLSS------------------ELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDIL 205
+ +++ +L++ +L + Y G ++FFL + + +
Sbjct: 194 HVDQVTTVKVPMMKRLGMFNIQHAKKLSSWVLLMKYLGNATAIFFL----PDEGKLQHLE 249
Query: 206 AALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRL 265
L D + +F E+ ++ + + +PK S+T +L L LG+ +FS GADLS +
Sbjct: 250 NELTHDIIT--KFLEN-EDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSNGADLSGV 306
Query: 266 TDSH-IAFGDAVHKARLDLDEQG 287
T+ + AVHKA L +DE+G
Sbjct: 307 TEEAPLKLSKAVHKAVLTIDEKG 329
>pdb|1D5S|A Chain A, Crystal Structure Of Cleaved Antitrypsin Polymer
Length = 334
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 149/323 (46%), Gaps = 46/323 (14%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
EF F L L + + N+F SP SI A + +T + + L NL ++
Sbjct: 13 EFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNF--NLTEIPE 70
Query: 61 MNVYK-MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVK----ECMTAIFPSEIQSMDFG 115
+++ ++L++ L DS L T+ N +F+++ + + E + ++ SE +++FG
Sbjct: 71 AQIHEGFQELLRTLN-QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFG 129
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVLWL------------PSTQESII 163
+ EA + IN +V + T+ I DL+ ++ LV ++ T+E
Sbjct: 130 DTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDF 189
Query: 164 IITVLSS------------------ELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDIL 205
+ +++ +L++ +L + Y G ++FFL + + +
Sbjct: 190 HVDQVTTVKVPMMKRLGMFNIQHCKKLSSWVLLMKYLGNATAIFFL----PDEGKLQHLE 245
Query: 206 AALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRL 265
L D + +F E+ ++ + + +PK S+T +L L LG+ +FS GADLS +
Sbjct: 246 NELTHDIIT--KFLEN-EDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSNGADLSGV 302
Query: 266 TDSH-IAFGDAVHKARLDLDEQG 287
T+ + AVHKA L +DE+G
Sbjct: 303 TEEAPLKLSKAVHKAVLTIDEKG 325
>pdb|1EZX|A Chain A, Crystal Structure Of A Serpin:protease Complex
Length = 335
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 149/323 (46%), Gaps = 46/323 (14%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
EF F L L + + N+F SP SI A + +T + + L NL ++
Sbjct: 9 EFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNF--NLTEIPE 66
Query: 61 MNVYK-MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVK----ECMTAIFPSEIQSMDFG 115
+++ ++L++ L DS L T+ N +F+++ + + E + ++ SE +++FG
Sbjct: 67 AQIHEGFQELLRTLN-QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFG 125
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVLWL------------PSTQESII 163
+ EA + IN +V + T+ I DL+ ++ LV ++ T+E
Sbjct: 126 DTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDF 185
Query: 164 IITVLSS------------------ELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDIL 205
+ +++ +L++ +L + Y G ++FFL + + +
Sbjct: 186 HVDQVTTVKVPMMKRLGMFNIQHCKKLSSWVLLMKYLGNATAIFFL----PDEGKLQHLE 241
Query: 206 AALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRL 265
L D + +F E+ ++ + + +PK S+T +L L LG+ +FS GADLS +
Sbjct: 242 NELTHDIIT--KFLEN-EDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSNGADLSGV 298
Query: 266 TDSH-IAFGDAVHKARLDLDEQG 287
T+ + AVHKA L +DE+G
Sbjct: 299 TEEAPLKLSKAVHKAVLTIDEKG 321
>pdb|3NDF|A Chain A, Cleaved Antitrypsin With P8-P6 Asp
Length = 343
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 149/323 (46%), Gaps = 46/323 (14%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
EF F L L + + N+F SP SI A + +T + + L NL ++
Sbjct: 17 EFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNF--NLTEIPE 74
Query: 61 MNVYK-MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVK----ECMTAIFPSEIQSMDFG 115
+++ ++L++ L DS L T+ N +F+++ + + E + ++ SE +++FG
Sbjct: 75 AQIHEGFQELLRTLN-QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFG 133
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVLWL------------PSTQESII 163
+ EA + IN +V + T+ I DL+ ++ LV ++ T+E
Sbjct: 134 DTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDF 193
Query: 164 IITVLSS------------------ELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDIL 205
+ +++ +L++ +L + Y G ++FFL + + +
Sbjct: 194 HVDQVTTVKVPMMKRLGMFNIQHAKKLSSWVLLMKYLGNATAIFFL----PDEGKLQHLE 249
Query: 206 AALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRL 265
L D + +F E+ ++ + + +PK S+T +L L LG+ +FS GADLS +
Sbjct: 250 NELTHDIIT--KFLEN-EDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSNGADLSGV 306
Query: 266 TDSH-IAFGDAVHKARLDLDEQG 287
T+ + AVHKA L +DE+G
Sbjct: 307 TEEAPLKLSKAVHKAVLTIDEKG 329
>pdb|1XU8|A Chain A, The 2.8 A Structure Of A Tumour Suppressing Serpin
pdb|1XU8|B Chain B, The 2.8 A Structure Of A Tumour Suppressing Serpin
Length = 380
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 90/387 (23%), Positives = 171/387 (44%), Gaps = 73/387 (18%)
Query: 2 FTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLD-- 59
F DL L NV SP + +L A + +T + QVL EN+ +
Sbjct: 16 FAVDLFKQLCEKEPLGNVLFSPICLSTSLSLAQVGAKGDTANEIGQVLHF-ENVKDVPFG 74
Query: 60 ----TMNVYKME-----KLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTAIFPSEIQ 110
T +V K+ KLI+ R D L ++ + + K P + E++
Sbjct: 75 FQTVTSDVNKLSSFYSLKLIK--RLYVDKSLNLST--EFISSTKRP--------YAKELE 122
Query: 111 SMDFGNEVEAARA-INSWVAQETKNNIKDLIATGQVNSRTNLVL---------WL---PS 157
++DF +++E + IN+ + T + ++++A VN +T +++ W+ P
Sbjct: 123 TVDFKDKLEETKGQINNSIKDLTDGHFENILADNSVNDQTKILVVNAAYFVGKWMKKFPE 182
Query: 158 TQ---------------------ESIIIITVLSSELNAHILEVPYKGGNMSMFFLLPPFA 196
++ E+ + + S +N I+E+P++ ++SMF LLP
Sbjct: 183 SETKECPFRLNKTDTKPVQMMNMEATFCMGNIDS-INCKIIELPFQNKHLSMFILLPKDV 241
Query: 197 SQDGVGDILAALKK--DPTSFKRFTEDSQ--NLKPVEIAIPKFSLTQEMNLIPTLSDLGV 252
+ G L ++K + S ++T S N K V+++IPKF + + ++ L +LG+
Sbjct: 242 EDESTG--LEKIEKQLNSESLSQWTNPSTMANAK-VKLSIPKFKVEKMIDPKACLENLGL 298
Query: 253 KDLFSPG-ADLSRLTDSH-IAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVRY 310
K +FS +D S ++++ +A + +HK L++ E G + L
Sbjct: 299 KHIFSEDTSDFSGMSETKGVALSNVIHKVCLEITEDGGDSIEVPGARILQHKDEL----- 353
Query: 311 EANHPFLYFLVDKEIQSILFAGVFNEP 337
A+HPF+Y + + ++I+F G F P
Sbjct: 354 NADHPFIYIIRHNKTRNIIFFGKFCSP 380
>pdb|1WZ9|A Chain A, The 2.1 A Structure Of A Tumour Suppressing Serpin
pdb|1WZ9|B Chain B, The 2.1 A Structure Of A Tumour Suppressing Serpin
Length = 375
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 90/386 (23%), Positives = 170/386 (44%), Gaps = 71/386 (18%)
Query: 2 FTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLD-- 59
F DL L NV SP + +L A + +T + QVL EN+ +
Sbjct: 11 FAVDLFKQLXEKEPLGNVLFSPICLSTSLSLAQVGAKGDTANEIGQVLHF-ENVKDVPFG 69
Query: 60 ----TMNVYKME-----KLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTAIFPSEIQ 110
T +V K+ KLI+ R D L ++ + + K P + E++
Sbjct: 70 FQTVTSDVNKLSSFYSLKLIK--RLYVDKSLNLST--EFISSTKRP--------YAKELE 117
Query: 111 SMDFGNEVEAARA-INSWVAQETKNNIKDLIATGQVNSRTNLVL---------WLPSTQE 160
++DF +++E + IN+ + T + ++++A VN +T +++ W+ E
Sbjct: 118 TVDFKDKLEETKGQINNSIKDLTDGHFENILADNSVNDQTKILVVNAAYFVGKWMKKFPE 177
Query: 161 SIII-------------ITVLSSE----------LNAHILEVPYKGGNMSMFFLLPPFAS 197
S + +++ E +N I+E+P++ ++SMF LLP
Sbjct: 178 SETKEXPFRLNKTDTKPVQMMNMEATFXMGNIDSINXKIIELPFQNKHLSMFILLPKDVE 237
Query: 198 QDGVGDILAALKK--DPTSFKRFTEDSQ--NLKPVEIAIPKFSLTQEMNLIPTLSDLGVK 253
+ G L ++K + S ++T S N K V+++IPKF + + ++ L +LG+K
Sbjct: 238 DESTG--LEKIEKQLNSESLSQWTNPSTMANAK-VKLSIPKFKVEKMIDPKACLENLGLK 294
Query: 254 DLFSPG-ADLSRLTDSH-IAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVRYE 311
+FS +D S ++++ +A + +HK L++ E G + L
Sbjct: 295 HIFSEDTSDFSGMSETKGVALSNVIHKVXLEITEDGGDSIEVPGARILQHKDEL-----N 349
Query: 312 ANHPFLYFLVDKEIQSILFAGVFNEP 337
A+HPF+Y + + ++I+F G F P
Sbjct: 350 ADHPFIYIIRHNKTRNIIFFGKFXSP 375
>pdb|2CEO|A Chain A, Thyroxine-Binding Globulin Complex With Thyroxine
pdb|2CEO|B Chain B, Thyroxine-Binding Globulin Complex With Thyroxine
Length = 379
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 162/373 (43%), Gaps = 54/373 (14%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+F F+L KN+F SP SI AL+ F + +T+ + + L NL
Sbjct: 12 DFAFNLYRRFTVETPDKNIFFSPVSISAALVMLSFGACCSTQTEIVETLGF--NLTDTPM 69
Query: 61 MNV-YKMEKLIQGLRANADSGLTFTSTNKIFVNDKI-PVKECMT---AIFPSEIQSMDFG 115
+ + + + LI L L N +F+ + P+ + + ++ +E+ S DF
Sbjct: 70 VEIQHGFQHLICSLNF-PKKELELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTDFS 128
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVLWL-----------PSTQE---S 161
N A + INS V +TK + LI + N+ LV ++ PS E S
Sbjct: 129 NISAAKQEINSHVEMQTKGKVVGLIQDLKPNTIMVLVNYIHFKAQWANPFDPSKTEDSSS 188
Query: 162 III-----------------ITVLSSELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDI 204
+I ++ ELN +L++ Y +++F +LP + V
Sbjct: 189 FLIDKTTTVQVPMMHQMEQYYHLVDMELNCTVLQMDYSKNALALF-VLPKEGQMESVEAA 247
Query: 205 LAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSR 264
+++ K + R + V++ +PKFS++ +L TL +G++ +S AD S
Sbjct: 248 MSS--KTLKKWNRLLQKGW----VDLFVPKFSISATYDLGATLLKMGIQHAYSENADFSG 301
Query: 265 LT-DSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRP----LEPVRYEANHPFLYF 319
LT D+ + +A HKA L + E+G V S +P L P+ + + F+
Sbjct: 302 LTEDNGLKLSNAAHKAVLHIGEKGTEAAAVPEVEL--SDQPENTFLHPI-IQIDRSFMLL 358
Query: 320 LVDKEIQSILFAG 332
++++ +SILF G
Sbjct: 359 ILERSTRSILFLG 371
>pdb|2D26|A Chain A, Active Site Distortion Is Sufficient For Proteinase
Inhibit Second Crystal Structure Of Covalent
Serpin-Proteinase Complex
Length = 358
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 147/323 (45%), Gaps = 46/323 (14%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
EF F L L + + N+ SP SI A + +T + + L NL ++
Sbjct: 32 EFAFSLYRQLAHQSNSTNILFSPVSIAAAFAMLSLGAKGDTHDEILEGLNF--NLTEIPE 89
Query: 61 MNVYK-MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVK----ECMTAIFPSEIQSMDFG 115
+++ ++L+ L DS L T+ N +F+++ + + E + ++ SE +++FG
Sbjct: 90 AQIHEGFQELLHTLN-QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFG 148
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVLWL------------PSTQE--- 160
+ EA + IN +V + T+ I DL+ ++ LV ++ T+E
Sbjct: 149 DTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDF 208
Query: 161 ---SIIIITV------------LSSELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDIL 205
+ + V S +L++ +L + Y G ++FFL + + +
Sbjct: 209 HVDQVTTVKVPMMKRLGMFNIQHSKKLSSWVLLMKYLGNATAIFFL----PDEGKLQHLE 264
Query: 206 AALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRL 265
L D + +F E+ ++ + + +PK S+T +L L LG+ +FS GADLS +
Sbjct: 265 NELTHDIIT--KFLEN-EDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSNGADLSGV 321
Query: 266 TDSH-IAFGDAVHKARLDLDEQG 287
T+ + AVHKA L +DE+G
Sbjct: 322 TEEAPLKLSKAVHKAVLTIDEKG 344
>pdb|4AJT|A Chain A, The Cystal Structure Of Mouse Protein-Z Dependent Protease
Inhibitor(Mzpi)
Length = 427
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 94/372 (25%), Positives = 162/372 (43%), Gaps = 58/372 (15%)
Query: 2 FTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTM 61
F F+LL ++ + G NV SPF + A++ + T+ ++ L L + L + +
Sbjct: 65 FGFNLLRKISMRHDG-NVIFSPFGLSVAMVNLMLGTKGETKVQIENGLNL-QALSQAGPL 122
Query: 62 NVYKM-EKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECM----TAIFPSEIQSMDFGN 116
+ + +K+ + +N D GL+ S F++ +KE F E S++F N
Sbjct: 123 ILPALFKKVKETFSSNRDLGLSQGSF--AFIHKDFDIKETYFNLSKKYFDIEYVSINFQN 180
Query: 117 EVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVL---------WL----PSTQES-- 161
+A IN + +ET+ I L ++N T L+L WL PS E+
Sbjct: 181 SSQARGLINHCIVKETEGKIPKLF--DEINPETKLILVDYVLFKGKWLTPFDPSFTEADT 238
Query: 162 -------IIIITVLSSELN----------AHILEVPYKGGNMSMFFLLPPFASQDGVGDI 204
I + ++ E N HIL++PY+G N +M +L + GD
Sbjct: 239 FHLDKYRAIKVPMMYREGNFTSTFDKKFRCHILKLPYQG-NATMLVVL-----MEKTGDY 292
Query: 205 LAALKKDPTSFKRFTEDSQNLK--PVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADL 262
LA +D + QN+K +E+ PKF L Q + L +G++ LFS ADL
Sbjct: 293 LAL--EDYLTVDLVETWLQNMKTRKMEVFFPKFKLNQRYEMHELLKQMGIRRLFSTSADL 350
Query: 263 SRLT--DSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVRYEANHPFLYFL 320
S L+ ++ + ++ L++DE+G S P P + N PF + +
Sbjct: 351 SELSAMARNLQVSRVLQQSVLEVDERGTEAVSGTLSEIIAYSMP--PA-IKVNRPFHFII 407
Query: 321 VDKEIQSILFAG 332
++ + +LF G
Sbjct: 408 YEEMSRMLLFLG 419
>pdb|4DY0|A Chain A, Crystal Structure Of Native Protease Nexin-1 With Heparin
pdb|4DY0|B Chain B, Crystal Structure Of Native Protease Nexin-1 With Heparin
pdb|4DY7|C Chain C, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
pdb|4DY7|F Chain F, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
Length = 379
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/364 (22%), Positives = 152/364 (41%), Gaps = 59/364 (16%)
Query: 18 NVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTMNVYKMEKLIQGLRANA 77
N+ +SP I L ++ T+ L V+R N V K+ K I +
Sbjct: 31 NIVISPHGIASVLGMLQLGADGRTKKQLAMVMRYGVN-------GVGKILKKINKAIVSK 83
Query: 78 DSGLTFTSTNKIFVND----KIPVKECMTAIFPSEIQSMDFGNEVEAARAINSWVAQETK 133
+ T N +FV + ++P +F E+++++F + A +IN+WV ET+
Sbjct: 84 KNKDIVTVANAVFVKNASEIEVPFVTRNKDVFQCEVRNVNFEDPASACDSINAWVKNETR 143
Query: 134 NNIKDLIATGQVN---SRTNLV-------LWLPSTQE----------------SIIIITV 167
+ I +L++ ++ +R LV LW Q + ++
Sbjct: 144 DMIDNLLSPDLIDGVLTRLVLVNAVYFKGLWKSRFQPENTKKRTFVAADGKSYQVPMLAQ 203
Query: 168 LS----------SELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDILAALKKDPTSFKR 217
LS ++L + +E+PY G ++SM LP +S I K S+
Sbjct: 204 LSVFRCGSTSAPNDLWYNFIELPYHGESISMLIALPTESSTPLSAIIPHISTKTIDSWMS 263
Query: 218 FTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLF-SPGADLSRLT--DSHIAFGD 274
K V++ +PKF+ + +L L LG+ D+F S A+ +++T ++
Sbjct: 264 IMVP----KRVQVILPKFTAVAQTDLKEPLKVLGITDMFDSSKANFAKITTGSENLHVSH 319
Query: 275 AVHKARLDLDEQGX-XXXXXXXVFAFRSSRPLEPVRYEANHPFLYFLVDKEIQSILFAGV 333
+ KA++++ E G + RSS P + + PFL+F+ ++LF G
Sbjct: 320 ILQKAKIEVSEDGTKASAATTAILIARSSPPW----FIVDRPFLFFIRHNPTGAVLFMGQ 375
Query: 334 FNEP 337
N+P
Sbjct: 376 INKP 379
>pdb|9PAI|A Chain A, Cleaved Substrate Variant Of Plasminogen Activator
Inhibitor-1
Length = 346
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/338 (23%), Positives = 144/338 (42%), Gaps = 70/338 (20%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+F + + A+K +NV SP+ + L + T+ ++ + + DK
Sbjct: 14 DFGVRVFQQVAQASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKID-DKGMA 72
Query: 61 MNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMT----AIFPSEIQSMDFGN 116
+ + K + G N D ++T+ IFV + + + +F S ++ +DF +
Sbjct: 73 PALRHLYKELMG-PWNKDE---ISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDF-S 127
Query: 117 EVEAAR-AINSWVAQETKNNIKDLIATGQVNSRTNLVL---------W------------ 154
EVE AR IN WV TK I +L+ G V+ T LVL W
Sbjct: 128 EVERARFIINDWVKTHTKGMISNLLGKGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRR 187
Query: 155 -LPSTQESIIIITVLS----------SELNAH---ILEVPYKGGNMSMFFLLP-----PF 195
+ S + + +++ + + H ILE+PY G +SMF P P
Sbjct: 188 LFHKSDGSTVSVPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPL 247
Query: 196 ASQDGV--GDILAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVK 253
++ + +++ K + T R + +PKFSL E++L L +LG+
Sbjct: 248 SALTNILSAQLISHWKGNMTRLPRL-----------LVLPKFSLETEVDLRKPLENLGMT 296
Query: 254 DLFSP-GADLSRLTDS---HIAFGDAVHKARLDLDEQG 287
D+F AD + L+D H+A A+ K +++++E G
Sbjct: 297 DMFRQFQADFTSLSDQEPLHVA--QALQKVKIEVNESG 332
>pdb|1JJO|C Chain C, Crystal Structure Of Mouse Neuroserpin (Cleaved Form)
pdb|1JJO|D Chain D, Crystal Structure Of Mouse Neuroserpin (Cleaved Form)
Length = 261
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 111/248 (44%), Gaps = 54/248 (21%)
Query: 86 TNKIFVNDKIPVKE----CMTAIFPSEIQSMDFGNEVEAARAINSWVAQETKNNIKDLIA 141
N +FV + V E + F +E+ +DF V A +IN WV T + +KDL++
Sbjct: 9 ANSLFVQNGFHVNEEFLQMLKMYFNAEVNHVDFSQNVAVANSINKWVENYTNSLLKDLVS 68
Query: 142 TGQVNSRTNLVL---------W-------------LPSTQESIIIITVL----------- 168
+ TNL L W ES + I ++
Sbjct: 69 PEDFDGVTNLALINAVYFKGNWKSQFRPENTRTFSFTKDDESEVQIPMMYQQGEFYYGEF 128
Query: 169 ---SSELNA--HILEVPYKGGNMSMFFLLPPFASQDGVGDILAALKKDPTSFKRFTEDSQ 223
S+E +LE+PY+G +SM L S+ V LA L +P + E+
Sbjct: 129 SDGSNEAGGIYQVLEIPYEGDEISMMLAL----SRQEVP--LATL--EPLLKAQLIEEWA 180
Query: 224 N---LKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRLTDSHIAF-GDAVHKA 279
N + VE+ +P+F++ QE++L L LGV ++F A+L+ ++D F AVHK+
Sbjct: 181 NSVKKQKVEVYLPRFTVEQEIDLKDILKALGVTEIFIKDANLTAMSDKKELFLSKAVHKS 240
Query: 280 RLDLDEQG 287
++++E+G
Sbjct: 241 CIEVNEEG 248
>pdb|1QMB|A Chain A, Cleaved Alpha-1-Antitrypsin Polymer
Length = 326
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 148/323 (45%), Gaps = 48/323 (14%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
EF F L L + + N+F SP SI A + +T + + L NL ++
Sbjct: 8 EFAFSLYRQLAHQS-STNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNF--NLTEIPE 64
Query: 61 MNVYK-MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVK----ECMTAIFPSEIQSMDFG 115
+++ ++L++ L DS L T+ N +F+++ + + E + ++ SE +++FG
Sbjct: 65 AAIHEGFQELLRTLN-QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFG 123
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVLWL------------PSTQESII 163
+ EA + IN +V + T+ I DL+ ++ LV ++ T+E
Sbjct: 124 DTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDF 183
Query: 164 IITVLSS------------------ELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDIL 205
+ +++ +L++ +L + Y G ++FFL + + +
Sbjct: 184 HVDQVTTVKVPMMKRLGMFNIQHCKKLSSWVLLMKYLGNATAIFFL----PDEGKLQHLE 239
Query: 206 AALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRL 265
L D + +F E+ + + + +PK S+T +L L LG+ +FS GADLS +
Sbjct: 240 NELTHDIIT--KFLENDR--RSASLHLPKLSITGTYDLKSVLGQLGITKVFSNGADLSGV 295
Query: 266 TDSH-IAFGDAVHKARLDLDEQG 287
T+ + AVHKA L +DE+G
Sbjct: 296 TEEAPLKLSKAVHKAVLTIDEKG 318
>pdb|1F0C|A Chain A, Structure Of The Viral Serpin Crma
Length = 305
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 73/316 (23%), Positives = 130/316 (41%), Gaps = 62/316 (19%)
Query: 5 DLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTMNVY 64
D+ + ++ KG+NVF+SP SI L Y+ +N +T L + + + +K D
Sbjct: 2 DIFREIASSMKGENVFISPPSISSVLTILYYGANGSTAEQLSKYVEKEADKNKDD----- 56
Query: 65 KMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTAIFPSEIQSMDFGNEVEAARAI 124
++F S NK++ K+ Q++DF + AI
Sbjct: 57 ----------------ISFKSMNKVYGRYSAVFKDSFLRKIGDNFQTVDF-TDCRTVDAI 99
Query: 125 NSWVAQETKNNIKDLIATGQVNSRTNLVL--------WL----------------PSTQE 160
N V T+ I L+ L + WL P+
Sbjct: 100 NKCVDIFTEGKINPLLDEPLSPDTCLLAISAVYFKAKWLMPFEKEFTSDYPFYVSPTEMV 159
Query: 161 SIIIITVLSSELNA----------HILEVPYKGGNMSMFFLLPPFASQDGVGDILAALKK 210
+ ++++ N I+E+PY G + SM +LP + DG+ I L
Sbjct: 160 DVSMMSMYGEAFNHASVKESFGNFSIIELPYVG-DTSMVVILPD--NIDGLESIEQNLTD 216
Query: 211 DPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRLTDSHI 270
T+FK++ DS + +++ IPKF +T NL+ L LG+ ++F D S + +S +
Sbjct: 217 --TNFKKWC-DSMDAMFIDVHIPKFKVTGSYNLVDALVKLGLTEVFGSTGDYSNMCNSDV 273
Query: 271 AFGDAVHKARLDLDEQ 286
+ +HK +D++E+
Sbjct: 274 SVDAMIHKTYIDVNEE 289
>pdb|1C8O|A Chain A, 2.9 A Structure Of Cleaved Viral Serpin Crma
Length = 300
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 74/317 (23%), Positives = 136/317 (42%), Gaps = 64/317 (20%)
Query: 5 DLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTMNVY 64
D+ + ++ KG+NVF+SP SI L Y+ +N +T L + + + +K D
Sbjct: 2 DIFREIASSMKGENVFISPPSISSVLTILYYGANGSTAEQLSKYVEKEADKNKDD----- 56
Query: 65 KMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTAIFPSEIQSMDFGNEVEAARAI 124
++F S NK++ K+ Q++DF + AI
Sbjct: 57 ----------------ISFKSMNKVYGRYSAVFKDSFLRKIGDNFQTVDF-TDSRTVDAI 99
Query: 125 NSWVAQETKNNIKDLIATGQVNSRTNLVL---------WL----------------PSTQ 159
N V T+ I L+ ++ T+L+ WL P+
Sbjct: 100 NKSVDIFTEGKINPLLDE-PLSPDTSLLAISAVYFKAKWLMPFEKEFTSDYPFYVSPTEM 158
Query: 160 ESIIIITVLSSELNA----------HILEVPYKGGNMSMFFLLPPFASQDGVGDILAALK 209
+ ++++ N I+E+PY G + SM +LP + DG+ I L
Sbjct: 159 VDVSMMSMYGEAFNHASVKESFGNFSIIELPYVG-DTSMVVILPD--NIDGLESIEQNLT 215
Query: 210 KDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRLTDSH 269
T+FK+++ DS + +++ IPKF +T NL+ L LG+ ++F D S +++S
Sbjct: 216 D--TNFKKWS-DSMDAMFIDVHIPKFKVTGSYNLVDALVKLGLTEVFGSTGDYSNMSNSD 272
Query: 270 IAFGDAVHKARLDLDEQ 286
++ +HK +D++E+
Sbjct: 273 VSVDAMIHKTYIDVNEE 289
>pdb|2RIV|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Human
Thyroxine Binding Globulin
pdb|2XN3|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Mefenamic Acid
Length = 343
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 141/324 (43%), Gaps = 47/324 (14%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+F F+L KN+F SP SI AL+ F + +T+ + + L NL
Sbjct: 16 DFAFNLYRRFTVETPDKNIFFSPVSISAALVMLSFGACCSTQTEIVETLGF--NLTDTPM 73
Query: 61 MNV-YKMEKLIQGLRANADSGLTFTSTNKIFVNDKI-PVKECMT---AIFPSEIQSMDFG 115
+ + + + LI L L N +F+ + P+ + + ++ +E+ S DF
Sbjct: 74 VEIQHGFQHLICSLNF-PKKELELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTDFS 132
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVLWL-----------PSTQE---S 161
N A + INS V +TK + LI + N+ LV ++ PS E S
Sbjct: 133 NISAAKQEINSHVEMQTKGKVVGLIQDLKPNTIMVLVNYIHFKAQWANPFDPSKTEDSSS 192
Query: 162 III-----------------ITVLSSELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDI 204
+I ++ ELN +L++ Y +++F +LP + V
Sbjct: 193 FLIDKTTTVQVPMMHQMEQYYHLVDMELNCTVLQMDYSKNALALF-VLPKEGQMESVEAA 251
Query: 205 LAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSR 264
+++ K + R + V++ +PKFS++ +L TL +G++ +S AD S
Sbjct: 252 MSS--KTLKKWNRLLQKGW----VDLFVPKFSISATYDLGATLLKMGIQHAYSENADFSG 305
Query: 265 LT-DSHIAFGDAVHKARLDLDEQG 287
LT D+ + +A HKA L + E+G
Sbjct: 306 LTEDNGLKLSNAAHKAVLHIGEKG 329
>pdb|2RIW|A Chain A, The Reactive Loop Cleaved Human Thyroxine Binding Globulin
Complexed With Thyroxine
Length = 338
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 141/324 (43%), Gaps = 47/324 (14%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+F F+L KN+F SP SI AL+ F + +T+ + + L NL
Sbjct: 11 DFAFNLYRRFTVETPDKNIFFSPVSISAALVMLSFGACCSTQTEIVETLGF--NLTDTPM 68
Query: 61 MNV-YKMEKLIQGLRANADSGLTFTSTNKIFVNDKI-PVKECMT---AIFPSEIQSMDFG 115
+ + + + LI L L N +F+ + P+ + + ++ +E+ S DF
Sbjct: 69 VEIQHGFQHLICSLNF-PKKELELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTDFS 127
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVLWL-----------PSTQE---S 161
N A + INS V +TK + LI + N+ LV ++ PS E S
Sbjct: 128 NISAAKQEINSHVEMQTKGKVVGLIQDLKPNTIMVLVNYIHFKAQWANPFDPSKTEDSSS 187
Query: 162 III-----------------ITVLSSELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDI 204
+I ++ ELN +L++ Y +++F +LP + V
Sbjct: 188 FLIDKTTTVQVPMMHQMEQYYHLVDMELNCTVLQMDYSKNALALF-VLPKEGQMESVEAA 246
Query: 205 LAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSR 264
+++ K + R + V++ +PKFS++ +L TL +G++ +S AD S
Sbjct: 247 MSS--KTLKKWNRLLQKGW----VDLFVPKFSISATYDLGATLLKMGIQHAYSENADFSG 300
Query: 265 LT-DSHIAFGDAVHKARLDLDEQG 287
LT D+ + +A HKA L + E+G
Sbjct: 301 LTEDNGLKLSNAAHKAVLHIGEKG 324
>pdb|2XN6|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Thyroxine-Fluoresein
Length = 350
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 141/324 (43%), Gaps = 47/324 (14%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+F F+L KN+F SP SI AL+ F + +T+ + + L NL
Sbjct: 17 DFAFNLYRRFTVETPDKNIFFSPVSISAALVMLSFGACCSTQTEIVETLGF--NLTDTPM 74
Query: 61 MNV-YKMEKLIQGLRANADSGLTFTSTNKIFVNDKI-PVKECMT---AIFPSEIQSMDFG 115
+ + + + LI L L N +F+ + P+ + + ++ +E+ S DF
Sbjct: 75 VEIQHGFQHLICSLNF-PKKELELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTDFS 133
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVLWL-----------PSTQE---S 161
N A + INS V +TK + LI + N+ LV ++ PS E S
Sbjct: 134 NISAAKQEINSHVEMQTKGKVVGLIQDLKPNTIMVLVNYIHFKAQWANPFDPSKTEDSSS 193
Query: 162 III-----------------ITVLSSELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDI 204
+I ++ ELN +L++ Y +++F +LP + V
Sbjct: 194 FLIDKTTTVQVPMMHQMDQYYHLVDMELNCTVLQMDYSKNALALF-VLPKEGQMESVEAA 252
Query: 205 LAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSR 264
+++ K + R + V++ +PKFS++ +L TL +G++ +S AD S
Sbjct: 253 MSS--KTLKKWNRLLQKGW----VDLFVPKFSISATYDLGATLLKMGIQHAYSENADFSG 306
Query: 265 LT-DSHIAFGDAVHKARLDLDEQG 287
LT D+ + +A HKA L + E+G
Sbjct: 307 LTEDNGLKLSNAAHKAVLHIGEKG 330
>pdb|2XN5|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Furosemide
pdb|2XN7|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Thyroxine-Fluoresein (T405-Cf)
Length = 350
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 141/324 (43%), Gaps = 47/324 (14%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+F F+L KN+F SP SI AL+ F + +T+ + + L NL
Sbjct: 17 DFAFNLYRRFTVETPDKNIFFSPVSISAALVMLSFGACCSTQTEIVETLGF--NLTDTPM 74
Query: 61 MNV-YKMEKLIQGLRANADSGLTFTSTNKIFVNDKI-PVKECMT---AIFPSEIQSMDFG 115
+ + + + LI L L N +F+ + P+ + + ++ +E+ S DF
Sbjct: 75 VEIQHGFQHLICSLNF-PKKELELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTDFS 133
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVLWL-----------PSTQE---S 161
N A + INS V +TK + LI + N+ LV ++ PS E S
Sbjct: 134 NISAAKQEINSHVEMQTKGKVVGLIQDLKPNTIMVLVNYIHFKAQWANPFDPSKTEDSSS 193
Query: 162 III-----------------ITVLSSELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDI 204
+I ++ ELN +L++ Y +++F +LP + V
Sbjct: 194 FLIDKTTTVQVPMMHQMEQYYHLVDMELNCTVLQMDYSKNALALF-VLPKEGQMESVEAA 252
Query: 205 LAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSR 264
+++ K + R + V++ +PKFS++ +L TL +G++ +S AD S
Sbjct: 253 MSS--KTLKKWNRLLQKGW----VDLFVPKFSISATYDLGATLLKMGIQHAYSENADFSG 306
Query: 265 LT-DSHIAFGDAVHKARLDLDEQG 287
LT D+ + +A HKA L + E+G
Sbjct: 307 LTEDNGLKLSNAAHKAVLHIGEKG 330
>pdb|1SNG|A Chain A, Structure Of A Thermophilic Serpin In The Native State
Length = 370
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 123/297 (41%), Gaps = 60/297 (20%)
Query: 83 FTSTNKIFVNDKIPVKECMTAIFP----SEIQSMDFGNEVEAARA-INSWVAQETKNNIK 137
S ++V+ +PV+ A S++++ DF E RA +N+ +A T+ I+
Sbjct: 85 LASRTVLWVSADVPVRSSFRATMHDRPDSDVRTADFRTNPEGVRATVNADIADATRGMIR 144
Query: 138 DLIATGQVNSRTNLVLWLPSTQESIIIITVLSSELNAHILE------------------- 178
+L+ G V +L ++ ++ AH+
Sbjct: 145 ELLPQGAVTPDLRAIL-----TNALWAKARWTTPFEAHLTRAGTFRTPRGPKRVPFMHRT 199
Query: 179 --VPY---KGGNM---------SMFFLLPPFASQDGVGDILAALKKDP--TSFKRFTEDS 222
+PY +G M ++ LLPP G AA+ P T+ R + +
Sbjct: 200 KTMPYATARGWRMVTLHAHDELAVDVLLPP-------GTNAAAVPTAPLLTALHRRSAST 252
Query: 223 QNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRLTDSHIAFGDAVHKARLD 282
VE+A+P+F LTQ L+ L++ GV+ LF+ ADLS ++ + +H+ARL
Sbjct: 253 S----VELALPRFELTQPHQLVEVLAEAGVRTLFTASADLSGISTVPLYVDTVIHQARLR 308
Query: 283 LDEQGXXXXXXXXVFAFRSSR--PLEPVRYEANHPFLYFLVDKEIQSILFAGVFNEP 337
+DE+G + P +R+ + PF +V + +ILF G +P
Sbjct: 309 VDERGAEGAAATAAMMLLAGAMPPRRTIRFSVDRPF--HIVVRRRGAILFLGSIADP 363
>pdb|1IMV|A Chain A, 2.85 A Crystal Structure Of Pedf
Length = 398
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 82/373 (21%), Positives = 153/373 (41%), Gaps = 55/373 (14%)
Query: 2 FTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTM 61
F +DL V ++ + NV +SP S+ AL +++ TE+ + + L + + D
Sbjct: 41 FGYDLYRVRSSMSPTTNVLLSPLSVATALSALSLGADERTESIIHRALYY-DLISSPDIH 99
Query: 62 NVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTAIFPSEIQSMD---FGNEV 118
YK +L+ + A + S ++I K+ +K A + GN
Sbjct: 100 GTYK--ELLDTVTAPQKN---LKSASRIVFEKKLRIKSSFVAPLEKSYGTRPRVLTGNPR 154
Query: 119 EAARAINSWVAQETKNNIK----------DLIATGQVNSRTNLVLWLPSTQESI------ 162
+ IN+WV + K + ++ G + + V S + S+
Sbjct: 155 LDLQEINNWVQAQMKGKLARSTKEIPDEISILLLGVAHFKGQWVTKFDSRKTSLEDFYLD 214
Query: 163 ---------------IIITVLSSELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDILAA 207
++ L S+L+ I ++P G +MS+ F LP +Q+ L
Sbjct: 215 EERTVRVPMMSDPKAVLRYGLDSDLSCKIAQLPLTG-SMSIIFFLPLKVTQN-----LTL 268
Query: 208 LKKDPTSFKRFTED-SQNLKPVE--IAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSR 264
+++ TS F D + LK V+ + +PK L+ E + +L ++ ++ LF D S+
Sbjct: 269 IEESLTS--EFIHDIDRELKTVQAVLTVPKLKLSYEGEVTKSLQEMKLQSLFD-SPDFSK 325
Query: 265 LTDSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVRYEANHPFLYFLVDKE 324
+T I H+A + +E G + + PL+ Y N PF++ L D +
Sbjct: 326 ITGKPIKLTQVEHRAGFEWNEDGAGTTPSPGLQPAHLTFPLD---YHLNQPFIFVLRDTD 382
Query: 325 IQSILFAGVFNEP 337
++LF G +P
Sbjct: 383 TGALLFIGKILDP 395
>pdb|1MTP|A Chain A, The X-Ray Crystal Structure Of A Serpin From A
Thermophilic Prokaryote
Length = 323
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 104/244 (42%), Gaps = 56/244 (22%)
Query: 83 FTSTNKIFVNDKIPVKECMTAIFP----SEIQSMDFGNEVEAARA-INSWVAQETKNNIK 137
S ++V+ +PV+ A S++++ DF E RA +N+ +A T+ I+
Sbjct: 81 LASRTVLWVSADVPVRSSFRATMHDRPDSDVRTADFRTNPEGVRATVNADIADATRGMIR 140
Query: 138 DLIATGQVNSRTNLVLWLPSTQESIIIITVLSSELNAHILE------------------- 178
+L+ G V +L ++ ++ AH+
Sbjct: 141 ELLPQGAVTPDLRAIL-----TNALWAKARWTTPFEAHLTREGTFRTPRGPKRVPFMHRT 195
Query: 179 --VPY---KGGNM---------SMFFLLPPFASQDGVGDILAALKKDP--TSFKRFTEDS 222
+PY +G M ++ LLPP G AA+ P T+ R + +
Sbjct: 196 KTMPYATARGWRMVTLHAHDELAVDVLLPP-------GTNAAAVPTAPLLTALHRRSAST 248
Query: 223 QNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRLTDSHIAFGDAVHKARLD 282
VE+A+P+F LTQ L+ L++ GV+ LF+ ADLS ++ + +H+ARL
Sbjct: 249 S----VELALPRFELTQPHQLVEVLAEAGVRTLFTASADLSGISTVPLYVDTVIHQARLR 304
Query: 283 LDEQ 286
+DE+
Sbjct: 305 VDER 308
>pdb|1M93|B Chain B, 1.65 A Structure Of Cleaved Viral Serpin Crma
Length = 245
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 66/114 (57%), Gaps = 6/114 (5%)
Query: 173 NAHILEVPYKGGNMSMFFLLPPFASQDGVGDILAALKKDPTSFKRFTEDSQNLKPVEIAI 232
N I+E+PY G + SM +LP + DG+ I L T+FK+++ DS + +++ I
Sbjct: 127 NFSIIELPYVG-DTSMVVILPD--NIDGLESIEQNLTD--TNFKKWS-DSMDAMFIDVHI 180
Query: 233 PKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRLTDSHIAFGDAVHKARLDLDEQ 286
PKF +T NL+ L LG+ ++F D S +++S ++ +HK +D++E+
Sbjct: 181 PKFKVTGSYNLVDALVKLGLTEVFGSTGDYSNMSNSDVSVDAMIHKTYIDVNEE 234
>pdb|3LE2|A Chain A, Structure Of Arabidopsis Atserpin1. Native Stressed
Conforma
Length = 393
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 82/377 (21%), Positives = 149/377 (39%), Gaps = 56/377 (14%)
Query: 9 VLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTMNVYKMEK 68
V+ ++ NV SP SI L I+ + A Q+L + D +N + E
Sbjct: 23 VITTVSQNSNVIFSPASINVVL---SIIAAGSAGATKDQILSFLK-FSSTDQLNSFSSE- 77
Query: 69 LIQGLRAN--ADSGLTFTSTNKIFVNDKIPVKECMTAIFPSEIQSM----DFGNE-VEAA 121
++ + A+ A+ G + N +++ + K + ++ DF ++ VE
Sbjct: 78 IVSAVLADGSANGGPKLSVANGAWIDKSLSFKPSFKQLLEDSYKAASNQADFQSKAVEVI 137
Query: 122 RAINSWVAQETKNNIKDLIATGQVNSRTNLVL---------WLPSTQESI---------- 162
+NSW +ET I +++ G +S T L+ W ES+
Sbjct: 138 AEVNSWAEKETNGLITEVLPEGSADSMTKLIFANALYFKGTWNEKFDESLTQEGEFHLLD 197
Query: 163 ---IIITVLSSELNAH--------ILEVPYKGG----NMSMFFLLPPFASQDGVGDILAA 207
+ ++S+ + +L +PY G SM+F LP + +G+ D+L
Sbjct: 198 GNKVTAPFMTSKKKQYVSAYDGFKVLGLPYLQGQDKRQFSMYFYLPD--ANNGLSDLLDK 255
Query: 208 LKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRLTD 267
+ P Q +K E IPKF + + L LG+ FS L+ + +
Sbjct: 256 IVSTPGFLDNHIPRRQ-VKVREFKIPKFKFSFGFDASNVLKGLGLTSPFSGEEGLTEMVE 314
Query: 268 S-----HIAFGDAVHKARLDLDEQGXXXXXXXX-VFAFRSSRPLE-PVRYEANHPFLYFL 320
S ++ + HKA ++++E+G V R E + + A+HPFL +
Sbjct: 315 SPEMGKNLCVSNIFHKACIEVNEEGTEAAAASAGVIKLRGLLMEEDEIDFVADHPFLLVV 374
Query: 321 VDKEIQSILFAGVFNEP 337
+ +LF G +P
Sbjct: 375 TENITGVVLFIGQVVDP 391
>pdb|3STO|A Chain A, Serpin From The Trematode Schistosoma Haematobium
Length = 406
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 103/268 (38%), Gaps = 45/268 (16%)
Query: 107 SEIQSMDFGNEVEAARAINSWVAQETK--------NNIKDLIATGQVNSRTNLVLWLP-- 156
E++ +DF N A IN WV Q++ ++I D A VN W
Sbjct: 143 GELKQVDFSNRTSATVDINDWVDQQSNGLLEKFFTDDIPDDTAXILVNVFYFRDFWQSPF 202
Query: 157 ----------------------STQESIIIITVLSSELNAHILEVPYKGGNMSMFFLLP- 193
TQE + E I+ P + +LP
Sbjct: 203 EPHYTRKEDFYISPDRQITVDXXTQEGVXKYGKFEDE-GFEIVSKPLNNTRFTFVIVLPL 261
Query: 194 PFASQDGVGDILAALKKDPTSFKRFTEDSQNLK--PVEIAIPKFSLTQEMNLIPTLSDLG 251
S +G ++L K +E +NLK V + +PKF+L ++L+PTL +G
Sbjct: 262 EKWSLNGATELLNGNK-------VLSEYVKNLKETTVSLRLPKFTLKNTLDLVPTLKSIG 314
Query: 252 VKDLFSP-GADLSRLT-DSHIAFGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVR 309
V DLF P +DLS +T + ++ + + L L+E G S + V
Sbjct: 315 VVDLFDPVKSDLSGITPNPNLYVNEFIQTNVLKLNESGIEATTVTSPIFVPFSAIIPEVD 374
Query: 310 YEANHPFLYFLVDKEIQSILFAGVFNEP 337
+ HPF+ F+ D+++ + A P
Sbjct: 375 FHVTHPFICFIYDQQLTXPIXAAKVXNP 402
>pdb|2OAY|A Chain A, Crystal Structure Of Latent Human C1-Inhibitor
Length = 390
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 77/356 (21%), Positives = 149/356 (41%), Gaps = 59/356 (16%)
Query: 18 NVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTMNVYKMEKLIQGLRANA 77
N+ SPFSI L + +NT+ NL+ +L P++ + Q L+
Sbjct: 56 NMAFSPFSIASLLTQVLLGAGENTKTNLESILSYPKDFTCVH-----------QALKGFT 104
Query: 78 DSGLTFTSTNKIFVNDKIPVKECMT----AIFPSEIQSMDFGNEVEAARAINSWVAQETK 133
G+ TS ++IF + + +++ ++ S + + N IN+WVA+ T
Sbjct: 105 TKGV--TSVSQIFHSPDLAIRDTFVNASRTLYSSSPRVLS-NNSDANLELINTWVAKNTN 161
Query: 134 NNIKDLIATGQVNSRTNLV--LWLPST-----------------QESIIIITVLSSELN- 173
N I L+ + ++R L+ ++L + + S+I + +++S+
Sbjct: 162 NKISRLLDSLPSDTRLVLLNAIYLSAKWKTTFDPKKTRMEPFHFKNSVIKVPMMNSKKYP 221
Query: 174 -AHILEVPYKG--------GNMSMFFLLPPFASQDGVGDILAALKKDPTSFKRFTE--DS 222
AH ++ K N+S+ L+P + + D+ AL P+ FK E +
Sbjct: 222 VAHFIDQTLKAKVGQLQLSHNLSLVILVPQ-NLKHRLEDMEQAL--SPSVFKAIMEKLEM 278
Query: 223 QNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRLT-DSHIAFGDAVHKARL 281
+P + +P+ +T +++ + L D FS +L LT D + H+ L
Sbjct: 279 SKFQPTLLTLPRIKVTTSQDMLSIMEKLEFFD-FSYDLNLCGLTEDPDLQVSAMQHQTVL 337
Query: 282 DLDEQGXXXXXXXXVFAFRSSRPLEPVRYEANHPFLYFLVDKEIQSILFAGVFNEP 337
+L E G + R+ + +E PFL+ L D++ + +F G +P
Sbjct: 338 ELTETGVEAAAASAISVARTL-----LVFEVQQPFLFMLWDQQHKFPVFMGRVYDP 388
>pdb|2VH4|A Chain A, Structure Of A Loop C-sheet Serpin Polymer
pdb|2VH4|B Chain B, Structure Of A Loop C-sheet Serpin Polymer
Length = 381
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 83/368 (22%), Positives = 145/368 (39%), Gaps = 51/368 (13%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+F+ +L N+ + +N +SP S AL ++ T A +++ L +++ L+
Sbjct: 23 DFSIELFK--NSIDDKENSLISPLSAMLALAMTANGADNETLAQMEKALGKDISIEDLNK 80
Query: 61 MNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTAI---FPSEIQSMDFGNE 117
M+KL + S LT ++ ND +P K+ + I + ++I F +
Sbjct: 81 YLYTYMKKLPNEEK----SKLTIANSIWFKENDFMPSKDFLQIIADYYKADIFKAAF--D 134
Query: 118 VEAARAINSWVAQETKNNIKD------------LIATGQVNSRTNLVLWLPSTQESIII- 164
IN+WV +T I LI ++ V S E I
Sbjct: 135 SSTVSDINNWVKSKTNGMIDKILNKIDPEDVMYLINAVAFDAEWETVYEKASVHEDIFTD 194
Query: 165 -------ITVLSSELNAHILE-------VPYKGGNMSMFFLLPPFASQDGVGDILAALKK 210
+ ++SE N +I E PY + S +LP V + + L
Sbjct: 195 VYGNRQKVEFMNSEENLYIEEENAIGFVKPYAKNHYSFVAILPD--ENISVNEYIKTL-- 250
Query: 211 DPTSFKRFTEDSQNLKP--VEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPG-ADLSRLTD 267
+ ++F + +N K V ++PKF + + TL LG+ D F P AD S+L
Sbjct: 251 ---TGQKFIDLIKNAKITLVRASLPKFKYEYTIKMNETLESLGMTDAFLPDKADFSKLGK 307
Query: 268 SHIA---FGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVRYEANHPFLYFLVDKE 324
S I + +HK + +DE G V + P+ + N PF++ ++D
Sbjct: 308 SDIGNLYISEVLHKTFISVDELGTKAGAVTSVDITAAGIPVNFKTVKLNRPFIFAIIDNS 367
Query: 325 IQSILFAG 332
+F G
Sbjct: 368 TNLPIFIG 375
>pdb|2PEF|A Chain A, Crystal Structure Of A Thermophilic Serpin, Tengpin, In
The Latent State
Length = 373
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 83/368 (22%), Positives = 145/368 (39%), Gaps = 51/368 (13%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+F+ +L N+ + +N +SP S AL ++ T A +++ L +++ L+
Sbjct: 15 DFSIELFK--NSIDDKENSLISPLSAMLALAMTANGADNETLAQMEKALGKDISIEDLNK 72
Query: 61 MNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTAI---FPSEIQSMDFGNE 117
M+KL + S LT ++ ND +P K+ + I + ++I F +
Sbjct: 73 YLYTYMKKLPNEEK----SKLTIANSIWFKENDFMPSKDFLQIIADYYKADIFKAAF--D 126
Query: 118 VEAARAINSWVAQETKNNIKD------------LIATGQVNSRTNLVLWLPSTQESIII- 164
IN+WV +T I LI ++ V S E I
Sbjct: 127 SSTVSDINNWVKSKTNGMIDKILNKIDPEDVMYLINAVAFDAEWETVYEKASVHEDIFTD 186
Query: 165 -------ITVLSSELNAHILE-------VPYKGGNMSMFFLLPPFASQDGVGDILAALKK 210
+ ++SE N +I E PY + S +LP V + + L
Sbjct: 187 VYGNRQKVEFMNSEENLYIEEENAVGFVKPYAKNHYSFVAILPD--ENISVNEYIKTL-- 242
Query: 211 DPTSFKRFTEDSQNLKP--VEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPG-ADLSRLTD 267
+ ++F + +N K V ++PKF + + TL LG+ D F P AD S+L
Sbjct: 243 ---TGQKFIDLIKNAKITLVRASLPKFKYEYTIKMNETLESLGMTDAFLPDKADFSKLGK 299
Query: 268 SHIA---FGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVRYEANHPFLYFLVDKE 324
S I + +HK + +DE G V + P+ + N PF++ ++D
Sbjct: 300 SDIGNLYISEVLHKTFISVDELGTKAGAVTSVDITAAGIPVNFKTVKLNRPFIFAIIDNS 359
Query: 325 IQSILFAG 332
+F G
Sbjct: 360 TNLPIFIG 367
>pdb|2PEE|A Chain A, Crystal Structure Of A Thermophilic Serpin, Tengpin, In
The Native State
pdb|2PEE|B Chain B, Crystal Structure Of A Thermophilic Serpin, Tengpin, In
The Native State
Length = 387
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 83/368 (22%), Positives = 145/368 (39%), Gaps = 51/368 (13%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+F+ +L N+ + +N +SP S AL ++ T A +++ L +++ L+
Sbjct: 30 DFSIELFK--NSIDDKENSLISPLSAMLALAMTANGADNETLAQMEKALGKDISIEDLNK 87
Query: 61 MNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTAI---FPSEIQSMDFGNE 117
M+KL + S LT ++ ND +P K+ + I + ++I F +
Sbjct: 88 YLYTYMKKLPNEEK----SKLTIANSIWFKENDFMPSKDFLQIIADYYKADIFKAAF--D 141
Query: 118 VEAARAINSWVAQETKNNIKD------------LIATGQVNSRTNLVLWLPSTQESIII- 164
IN+WV +T I LI ++ V S E I
Sbjct: 142 SSTVSDINNWVKSKTNGMIDKILNKIDPEDVMYLINAVAFDAEWETVYEKASVHEDIFTD 201
Query: 165 -------ITVLSSELNAHILE-------VPYKGGNMSMFFLLPPFASQDGVGDILAALKK 210
+ ++SE N +I E PY + S +LP V + + L
Sbjct: 202 VYGNRQKVEFMNSEENLYIEEENAIGFVKPYAKNHYSFVAILPD--ENISVNEYIKTL-- 257
Query: 211 DPTSFKRFTEDSQNLKP--VEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPG-ADLSRLTD 267
+ ++F + +N K V ++PKF + + TL LG+ D F P AD S+L
Sbjct: 258 ---TGQKFIDLIKNAKITLVRASLPKFKYEYTIKMNETLESLGMTDAFLPDKADFSKLGK 314
Query: 268 SHIA---FGDAVHKARLDLDEQGXXXXXXXXVFAFRSSRPLEPVRYEANHPFLYFLVDKE 324
S I + +HK + +DE G V + P+ + N PF++ ++D
Sbjct: 315 SDIGNLYISEVLHKTFISVDELGTKAGAVTSVDITAAGIPVNFKTVKLNRPFIFAIIDNS 374
Query: 325 IQSILFAG 332
+F G
Sbjct: 375 TNLPIFIG 382
>pdb|4AU2|A Chain A, Crystal Structure Of A Hsp47-Collagen Complex
pdb|4AU2|B Chain B, Crystal Structure Of A Hsp47-Collagen Complex
pdb|4AU2|C Chain C, Crystal Structure Of A Hsp47-Collagen Complex
pdb|4AU2|D Chain D, Crystal Structure Of A Hsp47-Collagen Complex
pdb|4AU4|A Chain A, Crystal Structure Of Hsp47
pdb|4AU4|B Chain B, Crystal Structure Of Hsp47
pdb|4AU4|C Chain C, Crystal Structure Of Hsp47
pdb|4AU4|D Chain D, Crystal Structure Of Hsp47
pdb|4AU4|E Chain E, Crystal Structure Of Hsp47
pdb|4AU4|F Chain F, Crystal Structure Of Hsp47
pdb|4AU4|G Chain G, Crystal Structure Of Hsp47
pdb|3ZHA|A Chain A, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|B Chain B, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|C Chain C, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|D Chain D, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|K Chain K, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|L Chain L, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|P Chain P, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|Q Chain Q, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition
Length = 392
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 226 KPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPG-ADLSRLTDSH-IAFGDAVHKARLDL 283
K V I++PK + +L L+ LG+ + ADLSR++ + H +
Sbjct: 266 KAVAISLPKGVVEVTHDLQKHLAGLGLTEAIDKNKADLSRMSGKKDLYLASVFHATAFEW 325
Query: 284 DEQGXXXXXXXXVFAFRSSRPLEPVRYEANHPFLYFLVDKEIQSILFAGVFNEP 337
D +G ++ R P + A+HPF++ + D + S+LF G P
Sbjct: 326 DTEGNPFDQD--IYGREELRS--PKLFYADHPFIFLVRDTQSGSLLFIGRLVRP 375
>pdb|4AU3|A Chain A, Crystal Structure Of A Hsp47-Collagen Complex
pdb|4AU3|C Chain C, Crystal Structure Of A Hsp47-Collagen Complex
pdb|4AU3|D Chain D, Crystal Structure Of A Hsp47-Collagen Complex
Length = 392
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 226 KPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPG-ADLSRLTDSH-IAFGDAVHKARLDL 283
K V I++PK + +L L+ LG+ + ADLSR + + H +
Sbjct: 266 KAVAISLPKGVVEVTHDLQKHLAGLGLTEAIDKNKADLSRXSGKKDLYLASVFHATAFEW 325
Query: 284 DEQGXXXXXXXXVFAFRSSRPLEPVRYEANHPFLYFLVDKEIQSILFAGVFNEP 337
D +G ++ R P + A+HPF++ + D + S+LF G P
Sbjct: 326 DTEGNPFDQD--IYGREELRS--PKLFYADHPFIFLVRDTQSGSLLFIGRLVRP 375
>pdb|4AU3|B Chain B, Crystal Structure Of A Hsp47-Collagen Complex
Length = 392
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 226 KPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPG-ADLSRLTDSH-IAFGDAVHKARLDL 283
K V I++PK + +L L+ LG+ + +DLSR + + H +
Sbjct: 266 KAVAISLPKGVVEVTHDLQKHLAGLGLTEAIDKNKSDLSRXSGKKDLYLASVFHATAFEW 325
Query: 284 DEQGXXXXXXXXVFAFRSSRPLEPVRYEANHPFLYFLVDKEIQSILFAGVFNEP 337
D +G ++ R P + A+HPF++ + D + S+LF G P
Sbjct: 326 DTEGNPFDQD--IYGREELRS--PKLFYADHPFIFLVRDTQSGSLLFIGRLVRP 375
>pdb|1M93|A Chain A, 1.65 A Structure Of Cleaved Viral Serpin Crma
Length = 55
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 4 FDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLR 50
D+ + ++ KG+NVF+SP SI L Y+ +N +T L + +
Sbjct: 1 MDIFREIASSMKGENVFISPPSISSVLTILYYGANGSTAEQLSKYVE 47
>pdb|3NXA|A Chain A, X-Ray Structure Of The Apo Form Of Human S100a16
pdb|3NXA|B Chain B, X-Ray Structure Of The Apo Form Of Human S100a16
pdb|3NXA|C Chain C, X-Ray Structure Of The Apo Form Of Human S100a16
pdb|3NXA|D Chain D, X-Ray Structure Of The Apo Form Of Human S100a16
Length = 100
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 17 KNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTMNVYKMEKLIQGLRAN 76
K V V + Y+ + + NK ++++ +++L+ N DT N +KLIQ L AN
Sbjct: 8 KAVIVLVENFYKYVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDAN 67
Query: 77 ADSGLTF 83
D ++F
Sbjct: 68 HDGRISF 74
>pdb|2L50|A Chain A, Solution Structure Of Apo S100a16
pdb|2L50|B Chain B, Solution Structure Of Apo S100a16
pdb|2L51|A Chain A, Solution Structure Of Calcium Bound S100a16
pdb|2L51|B Chain B, Solution Structure Of Calcium Bound S100a16
Length = 102
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 17 KNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTMNVYKMEKLIQGLRAN 76
K V V + Y+ + + NK ++++ +++L+ N DT N +KLIQ L AN
Sbjct: 9 KAVIVLVENFYKYVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDAN 68
Query: 77 ADSGLTF 83
D ++F
Sbjct: 69 HDGRISF 75
>pdb|2CW8|A Chain A, Crystal Structure Of Intein Homing Endonuclease Ii
Length = 537
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 15/105 (14%)
Query: 19 VFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTMNVYKMEKL-IQGLRANA 77
VF SP + A L YFI + + N + LRL + L V + + + ++
Sbjct: 364 VFTSPKGVRLAFLEGYFIGDGDVHPNKR--LRLSTKSELLANQLVLLLNSVGVSAVKLGH 421
Query: 78 DSGLTFTSTNKIFVNDKIPVKEC-------MTAIFPSEIQSMDFG 115
DSG+ ++++N+++P + + + P E+ S FG
Sbjct: 422 DSGVY-----RVYINEELPFVKLDKKKNAYYSHVIPKEVLSEVFG 461
>pdb|1HLE|B Chain B, Crystal Structure Of Cleaved Equine Leucocyte Elastase
Inhibitor Determined At 1.95 Angstroms Resolution
Length = 31
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 310 YEANHPFLYFLVDKEIQSILFAGVFNEP 337
+ A+HPF++F+ +ILF G F+ P
Sbjct: 4 FNADHPFIFFIRHNPSANILFLGRFSSP 31
>pdb|2CW7|A Chain A, Crystal Structure Of Intein Homing Endonuclease Ii
Length = 537
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 15/105 (14%)
Query: 19 VFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTMNVYKMEKL-IQGLRANA 77
VF SP + A L YFI + + N + LRL + L V + + + ++
Sbjct: 364 VFTSPKGVRLAFLEGYFIGDGDVHPNKR--LRLSTKSELLANQLVLLLNSVGVSAVKLGH 421
Query: 78 DSGLTFTSTNKIFVNDKIPVKEC-------MTAIFPSEIQSMDFG 115
DSG+ ++++N+++P + + + P E+ S FG
Sbjct: 422 DSGVY-----RVYINEELPFVKLDKKKNAYYSHVIPKEVLSEVFG 461
>pdb|2I7X|A Chain A, Structure Of Yeast Cpsf-100 (Ydh1p)
Length = 717
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 170 SELNAHILEVPYKGGN---MSMFFLLPPFASQDGVGDILAALKKDPTSFKRFTEDSQNL 225
SE+ A I EV K GN ++ P F + IL +++D ++K F ED ++
Sbjct: 343 SEVGALINEVIIKVGNSEKTTLILTKPSFECASSLDKILEIVEQDERNWKTFPEDGKSF 401
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,308,827
Number of Sequences: 62578
Number of extensions: 354825
Number of successful extensions: 1233
Number of sequences better than 100.0: 126
Number of HSP's better than 100.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 758
Number of HSP's gapped (non-prelim): 223
length of query: 342
length of database: 14,973,337
effective HSP length: 100
effective length of query: 242
effective length of database: 8,715,537
effective search space: 2109159954
effective search space used: 2109159954
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)