RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7902
(342 letters)
>gnl|CDD|238101 cd00172, SERPIN, SERine Proteinase INhibitors (serpins) exhibit
conformational polymorphism shifting from native to
cleaved, latent, delta, or polymorphic forms. Many
serpins, such as antitrypsin and antichymotrypsin,
function as serine protease inhibitors which regulate
blood coagulation cascades. Non-inhibitory serpins
perform many diverse functions such as chaperoning
proteins or transporting hormones. Serpins are of
medical interest because mutants have been associated
with blood clotting disorders, emphysema, cirrhosis, and
dementia.
Length = 364
Score = 261 bits (669), Expect = 3e-85
Identities = 112/371 (30%), Positives = 178/371 (47%), Gaps = 47/371 (12%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+F DL L + +NV SP SI AL Y + T L++VL LP LD D
Sbjct: 4 DFALDLYKQLAKSEPDENVVFSPLSIASALALLYLGAGGETREQLRKVLGLPS-LDDEDV 62
Query: 61 MNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTAI----FPSEIQSMDFGN 116
+K L+ L+ +++ G+ N++FV + VKE + + +E++S+DF N
Sbjct: 63 HQAFK--SLLSSLK-DSEKGVELKLANRLFVQKGLTVKEDFLDLAKKYYDAEVESVDFAN 119
Query: 117 EVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVL---------WL-----PSTQE-- 160
AA IN+WV ++T IKDL++ ++ T LVL W T++
Sbjct: 120 PEAAAAQINNWVEEKTNGKIKDLLSPDALDPDTRLVLVNAIYFKGKWKTPFDPELTRKRP 179
Query: 161 ----SIIIITV------------LSSELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDI 204
+ V EL+A +LE+PYKG ++SM +LP G+ ++
Sbjct: 180 FYVSEGESVQVPMMYQTGKFRYAEDEELDAQVLELPYKGSDLSMLIILPK--EVTGLAEL 237
Query: 205 LAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSR 264
L + + + + VE+ +PKF + ++L L LG+ DLFSP ADLS
Sbjct: 238 EEKLSAE--KLDDLLSNLKE-REVEVTLPKFKIESSLDLKEVLQALGITDLFSPSADLSS 294
Query: 265 LTDSH-IAFGDAVHKARLDLDEQGTTAAAATAVFAFRSSRPLEPVRYEANHPFLYFLVDK 323
++ + +HKA ++++E+GT AAAATAV PV ++A+ PFL+ + D
Sbjct: 295 ISSDEPLYVSKVIHKAFIEVNEEGTEAAAATAVSIVPRRPS-PPVEFKADRPFLFLIRDD 353
Query: 324 EIQSILFAGVF 334
+ILF G
Sbjct: 354 TTGTILFLGRV 364
>gnl|CDD|215699 pfam00079, Serpin, Serpin (serine protease inhibitor). Structure
is a multi-domain fold containing a bundle of helices
and a beta sandwich.
Length = 369
Score = 254 bits (652), Expect = 1e-82
Identities = 114/375 (30%), Positives = 172/375 (45%), Gaps = 48/375 (12%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+F FDL L+ + KN+F SP SI AL Y + T L VL PE LD +
Sbjct: 5 DFAFDLYKQLSKESPDKNIFFSPLSISTALAMLYLGARGETAEQLLSVLGFPE-LDDEEI 63
Query: 61 MNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTAI----FPSEIQSMDFGN 116
++ L+ L D G T N++FV+ + +K + + +E++S+DF +
Sbjct: 64 HEGFQ--SLLSSLNKP-DKGYTLKIANRLFVDKGLKLKPDFLQLLKKYYGAEVESVDFSD 120
Query: 117 EVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVL---------WL-----PSTQESI 162
EA + INSWV ++T IKDL+ G ++ T LVL W T+E
Sbjct: 121 PAEARKQINSWVEKKTNGKIKDLLPEGSLDPDTRLVLVNAIYFKGKWKTPFDPELTKEEP 180
Query: 163 ------IIITV------------LSSELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDI 204
+ V EL +LE+PYKG N+SM +LP G+ ++
Sbjct: 181 FHVDNGTTVKVPMMSQEGTFRYAEDEELGCKVLELPYKG-NLSMLIILP--DEGGGLEEL 237
Query: 205 LAALKKDPTSFKRFTEDSQNLKP-VEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLS 263
+L + + + K E+ +PKF + +L L LG+ D FS AD S
Sbjct: 238 EKSL--TAELLEEWLSSLKPRKVREELYLPKFKIESSYDLKEVLKKLGITDAFSSKADFS 295
Query: 264 RLTDSHIAF-GDAVHKARLDLDEQGTTAAAATAVFAFRSSRPLEPVRYEANHPFLYFLVD 322
++ S + VHKA ++++E+GT AAAAT V + P P + A+ PFL+ + D
Sbjct: 296 GISSSEPLYVSKVVHKAFIEVNEEGTEAAAATGVVIVPRAPP-PPPEFVADRPFLFLIRD 354
Query: 323 KEIQSILFAGVFNEP 337
SILF G P
Sbjct: 355 NSTGSILFMGRVVNP 369
>gnl|CDD|214513 smart00093, SERPIN, SERine Proteinase INhibitors.
Length = 359
Score = 215 bits (549), Expect = 3e-67
Identities = 117/375 (31%), Positives = 183/375 (48%), Gaps = 57/375 (15%)
Query: 4 FDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTMNV 63
FDL L + KN+F SP SI AL + +T + +VL NL + ++
Sbjct: 1 FDLYKELAKESPDKNIFFSPVSISSALAMLSLGAKGSTATQILEVLGF--NLTETSEADI 58
Query: 64 YKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVK----ECMTAIFPSEIQSMDFGNEVE 119
++ + + L DS L + N +FV+ + +K E + ++ +E+QS+DF ++ E
Sbjct: 59 HQGFQHLLHLLNRPDSQLELKTANALFVDKSLKLKDSFLEDIKKLYGAEVQSVDFSDKAE 118
Query: 120 AAR-AINSWVAQETKNNIKDLIATGQVNSRTNLVL---------W----LPS-TQESI-- 162
A+ IN WV ++T+ IKDL++ ++S T LVL W P T+E
Sbjct: 119 EAKKQINDWVEKKTQGKIKDLLS--DLDSDTRLVLVNAIYFKGKWKTPFDPELTREEDFH 176
Query: 163 ----IIITV-------------LSSELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDIL 205
+ V ELN +LE+PYKG N SM +LP + G+ +
Sbjct: 177 VDETTTVKVPMMSQTGRTFNYGHDEELNCQVLELPYKG-NASMLIILP---DEGGLEKLE 232
Query: 206 AALKKDPTSFKRFTEDSQNLKP--VEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLS 263
AL + + + ++L VE+ +PKF + +L L LG+ DLFS ADLS
Sbjct: 233 KAL-----TPETLKKWMKSLTKRSVELYLPKFKIEGTYDLKDVLEKLGITDLFSNKADLS 287
Query: 264 RLTDSH-IAFGDAVHKARLDLDEQGTTAAAATAVFAFRSSRPLEPVRYEANHPFLYFLVD 322
+++ + +HKA L+++E+GT AAAAT V A S P E ++AN PFL+ + D
Sbjct: 288 GISEDKDLKVSKVLHKAVLEVNEEGTEAAAATGVIAVPRSLPPE---FKANRPFLFLIRD 344
Query: 323 KEIQSILFAGVFNEP 337
+ SILF G P
Sbjct: 345 NKTGSILFMGKVVNP 359
>gnl|CDD|239013 cd02058, PAI-2, Plasminogen Activator Inhibitor-2 (PAI-2). PAI-2 is
a serine protease inhibitor that belongs to the
ov-serpin branch of the serpin superfamily. It is is an
effective inhibitor of urinary plasminogen activator
(urokinase or uPA) and is involved in cell
differentiation, tissue growth and regeneration.
Length = 380
Score = 174 bits (443), Expect = 2e-51
Identities = 114/380 (30%), Positives = 179/380 (47%), Gaps = 51/380 (13%)
Query: 2 FTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTM 61
F +L L ++ KN+F SP+SI AL Y + NT A + +VL+ E + +
Sbjct: 8 FALNLFKKLAESSPTKNIFFSPWSISSALAMVYLGAKGNTAAQMAKVLQFNEVGGNSEDI 67
Query: 62 NVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKE----CMTAIFPSEIQSMDFGNE 117
+ + L+ + + L S N+++ P E + +E Q++DF
Sbjct: 68 HS-GFQSLLSEINKPGTNYL-LKSANRLYGEKTYPFLEKFLQLTQKYYQAEPQAVDFVEA 125
Query: 118 VEAARA-INSWVAQETKNNIKDLIATGQVNSRTNLVL---------W------------- 154
E AR INSWV ++T+ I++L+ G V+S T LVL W
Sbjct: 126 AEQARKEINSWVERQTEGKIQNLLPPGSVDSLTRLVLVNAIYFKGNWEEKFLKENTRERP 185
Query: 155 --LPSTQESIIIITVLSSELN--------AHILEVPYKGGNMSMFFLLPPFASQDGVGDI 204
L + + L + A +LE+PY G +SMF LLP G
Sbjct: 186 FRLNKNTTKPVQMMFLKKKFPITYIEELKAQVLELPYVGKELSMFILLPDEIEDVTTG-- 243
Query: 205 LAALKKDPTSFKRFTE----DSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPG- 259
L L+K+ T +++ E + VE+ +PKF L + +L TLS +G++D F PG
Sbjct: 244 LEKLEKELT-YEKLNEWTSPEMMEEYEVEVYLPKFKLEESYDLKSTLSSMGMEDAFDPGK 302
Query: 260 ADLSRLTDSHIAF-GDAVHKARLDLDEQGTTAAAAT-AVFAFRSSRPLEPVRYEANHPFL 317
AD S ++ ++ F HKA ++++E+GT AAAAT A+ R P R+ A+HPFL
Sbjct: 303 ADFSGMSSANDLFLSKVFHKAFVEVNEEGTEAAAATAAIMMLRCLMP--SPRFNADHPFL 360
Query: 318 YFLVDKEIQSILFAGVFNEP 337
+F+ + +ILF G F P
Sbjct: 361 FFIRHNKTNTILFFGRFCSP 380
>gnl|CDD|239011 cd02056, alpha-1-antitrypsin_like, alpha-1-antitrypsin_like. This
family contains a variety of different members of clade
A of the serpin superfamily. They include the classical
serine proteinase inhibitors, alpha-1-antitrypsin and
alpha-1-antichymotrypsin, protein C inhibitor,
kallistatin, and noninhibitory serpins, like
corticosteroid and thyroxin binding globulins. In
general, SERine Proteinase INhibitors (serpins) exhibit
conformational polymorphism shifting from native to
cleaved, latent, delta, or polymorphic forms. Many
serpins, such as antitrypsin and antichymotrypsin,
function as serine protease inhibitors which regulate
blood coagulation cascades. Non-inhibitory serpins
perform many diverse functions such as chaperoning
proteins or transporting hormones. Serpins are of
medical interest because mutants have been associated
with blood clotting disorders, emphysema, cirrhosis, and
dementia.
Length = 361
Score = 158 bits (402), Expect = 2e-45
Identities = 117/372 (31%), Positives = 185/372 (49%), Gaps = 56/372 (15%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
+F F L L + + KN+F SP SI AL + +T A + + L NL ++
Sbjct: 4 DFAFRLYRQLASESPSKNIFFSPVSISTALAMLSLGARSSTLAQILEGLGF--NLTEISE 61
Query: 61 MNVYK-MEKLIQGLRANADSGLTFTSTNKIFVNDKI-PVK---ECMTAIFPSEIQSMDFG 115
+++ + L+ L DSGL N +F++ ++ P+ E + ++ SE S DF
Sbjct: 62 EEIHQGFQHLLHLL-NQPDSGLQLNMGNALFLDKRLKPLDKFLEDVKHLYESEAFSTDFQ 120
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVL---------W-LP----STQES 161
+ EA + IN +V ++T I DL+ ++S T +VL W P TQE
Sbjct: 121 DSAEAKKQINDYVEKKTHGKIVDLVK--DLDSDTVMVLVNYIYFKGKWEKPFDPELTQEE 178
Query: 162 IIII----TV--------------LSSELNAHILEVPYKGGNMSMFFLLPPFASQDGVGD 203
+ TV SEL+ ++++PYKG N + FF+LP + +
Sbjct: 179 DFFVDEKTTVKVPMMHQTGRYDYLHDSELSCTVVQMPYKG-NATAFFVLP---DEGKMKQ 234
Query: 204 ILAALKKDPTSFKRFTEDSQNLKP--VEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGAD 261
+ AAL +D + K++ S+ L V++ +PKFS++ NL L +G+ D+FS AD
Sbjct: 235 VEAALSRD--TLKKW---SKLLSKRSVDLYLPKFSISGTYNLKDILPKMGITDVFSDKAD 289
Query: 262 LSRLT-DSHIAFGDAVHKARLDLDEQGTTAAAATAVFAFRSSRPLEPVRYEANHPFLYFL 320
LS +T ++ AVHKA LD+DE+GT AAAAT V S +++ N PFL +
Sbjct: 290 LSGITEQPNLKVSKAVHKAVLDVDEKGTEAAAATGVEITPMSALPPILKF--NRPFLLLI 347
Query: 321 VDKEIQSILFAG 332
D+ +SILF G
Sbjct: 348 FDRTTESILFLG 359
>gnl|CDD|239014 cd02059, ovalbumin_like, The ovalbumin_like group of serpins
contains ovalbumin, the squamous cell carcinoma antigen
1 (SCCA1) and other closely related serpins of clade B
of the serpin superfamily. Ovalbumin, the major protein
component of avian egg white, is a non-inhibitory member
of SERine Proteinase INhibitorS (serpins). In contrast,
SCCA1 inhibits cysteine proteinases such as cathepsin S,
K, L, and papain, a so called cross-class serpin.
Length = 389
Score = 157 bits (399), Expect = 7e-45
Identities = 110/392 (28%), Positives = 178/392 (45%), Gaps = 64/392 (16%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLR---LPENLDK 57
EF FDL L +K KN+F SP SI AL + +T A +++VL +
Sbjct: 7 EFCFDLFKELKKNHKNKNIFFSPLSISSALGMVLLGARDDTAAQIEKVLHFDHASGSGSS 66
Query: 58 L--------DTMNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVK----ECMTAIF 105
+ V+ K + + + N+++ P +C+ ++
Sbjct: 67 KPAASAQCNQSGGVHSQFKDLLSQINKPNDDYELSIANRLYGEKTYPFHQEYLDCVEKLY 126
Query: 106 PSEIQSMDFGNEVEAARA-INSWVAQETKNNIKDLIATGQVNSRTNLVL----------- 153
++++ +DF N EA+R INSWV +T IK+L G ++S T LVL
Sbjct: 127 RAKLEPVDFQNAAEASRKKINSWVESQTNGKIKNLFGKGTIDSSTVLVLVNAIYFKGKWE 186
Query: 154 -------------WLPS---------TQESIIIITVLSSELNAHILEVPYKGGNMSMFFL 191
L Q + + E ILE+PY GG +SM L
Sbjct: 187 KKFEKENTVDAPFKLNENENKPVQMMYQIGKFKLASIE-EPKMKILELPYAGGGLSMIVL 245
Query: 192 LPPFASQDGVGDILAALKKDPTSFKRFTE--DSQNL--KPVEIAIPKFSLTQEMNLIPTL 247
LP D + L L+ T +++ E S+N+ + VE+ +P+F L ++ NL L
Sbjct: 246 LP-----DEISG-LEQLESKLT-YEKLMEWTSSENMRERKVEVYLPRFKLEEKYNLKSVL 298
Query: 248 SDLGVKDLFS-PGADLSRLTDS-HIAFGDAVHKARLDLDEQGTTAAAATAVFAFRSSRPL 305
+G+ D+FS ADLS ++ S + A+HK+ ++++E+GT AAAAT S P+
Sbjct: 299 KAMGMTDIFSESKADLSGISSSKSLYLSKAIHKSYVEVNEEGTEAAAATGAGIVEKSLPV 358
Query: 306 EPVRYEANHPFLYFLVDKEIQSILFAGVFNEP 337
+ A+HPFL+F+ + +ILF G F+ P
Sbjct: 359 -SEEFRADHPFLFFIRHNKTNTILFFGRFSSP 389
>gnl|CDD|227163 COG4826, COG4826, Serine protease inhibitor [Posttranslational
modification, protein turnover, chaperones].
Length = 410
Score = 152 bits (385), Expect = 1e-42
Identities = 99/374 (26%), Positives = 166/374 (44%), Gaps = 50/374 (13%)
Query: 2 FTFDLLTVLNNAN-KGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
F FDL + L + +N+ SP+S+ A+ Y + +T+ + V P N L
Sbjct: 45 FAFDLYSELAKQEGEAENILFSPYSVSAAMAMCYEGAEGSTKEQMSNVFYFPINKTVLKV 104
Query: 61 MNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKE----CMTAIFPSEIQSMDFGN 116
+ + L + + DS + N ++V + P+KE + + +E+ ++DF N
Sbjct: 105 ----REKSLNDKINSPNDS-YELETANALWVQEDYPLKENYVNNVRNYYDAEVTNLDFVN 159
Query: 117 EVEAAR-AINSWVAQETKNNIKDLIATGQVNSRTNLVL---------WL----------- 155
+ +A+R IN WV ++T IKDL+ + T LVL W
Sbjct: 160 KPDASRDTINKWVEEKTNGKIKDLVPEDYIGPDTRLVLTNAIYFNGKWWPEFDKQMTGKR 219
Query: 156 ---PSTQESIIIITVLSSE-------LNAHILEVPYKGGNMSMFFLLPPFASQDGVGDIL 205
P+ E + + A I+E+PYKG ++SM+ +LP + +
Sbjct: 220 TFYPAKGEDKSVDMMSICGDFNYGETSKAKIVELPYKGDDLSMYIVLPK-------DNNI 272
Query: 206 AALKKDPT--SFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLS 263
+ + T + + ++ VE+ IPKF + L L ++GV D F A+ S
Sbjct: 273 TEFENNFTLEKYTELKSNMEDQDEVEVEIPKFKFETKTELKDALIEMGVVDAFENTANFS 332
Query: 264 RLTDSHIAFGDAVHKARLDLDEQGTTAAAATAVFAFRSSRPLEPVRYEANHPFLYFLVDK 323
++D + D H+A +D+DE+GT AAAATAV V + +HPFL+ + D+
Sbjct: 333 GISDRRLEISDVFHQAFIDVDEEGTEAAAATAVVFKAVCAKGGWVEFVVDHPFLFVIEDR 392
Query: 324 EIQSILFAGVFNEP 337
ILF G P
Sbjct: 393 RSGCILFIGKVVNP 406
>gnl|CDD|238999 cd02044, ov-serpin, ovalbumin family of serpins (ov-serpins).
Family of closely related proteins, whose members can be
secreted (ovalbumin), cytosolic (leukocyte elastase
inhibitor, LEI), or targeted to both compartments
(plasminogen activator inhibitor 2, PAI-2). This
subgroup corresponds to clade B of the serpin
superfamily. In general, serpins exhibit conformational
polymorphism shifting from native to cleaved, latent,
delta, or polymorphic forms. Many serpins, such as
antitrypsin and antichymotrypsin, function as serine
protease inhibitors which regulate blood coagulation
cascades. Non-inhibitory serpins perform many diverse
functions such as chaperoning proteins or transporting
hormones. Serpins are of medical interest because
mutants can cause blood clotting disorders, emphysema,
cirrhosis, and dementia.
Length = 370
Score = 145 bits (368), Expect = 2e-40
Identities = 91/381 (23%), Positives = 170/381 (44%), Gaps = 61/381 (16%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
F D+ L+ + +NVF SP +I +L Y + +T + +VL +N+ + +
Sbjct: 7 AFAVDVFKELSKKSALQNVFFSPIAIMSSLAMVYLGAKGSTANQIGKVLHF-DNVKDVHS 65
Query: 61 MNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKE----CMTAIFPSEIQSMDFGN 116
+ L+ + + N+++ + + E++++DF +
Sbjct: 66 ----SFQTLLSDINKLNSF-YSLKLVNRLYGEKRYNFLPEFLSSTKKPYAKELETVDFKD 120
Query: 117 EVEAARA-INSWVAQETKNNIKDLIATGQVNSRTNLVL---------WLPSTQES---II 163
+ E R INSW+ +TK I++L+ V+S+T +V+ W+ E
Sbjct: 121 KAEETRGQINSWIKDQTKGKIENLLPENSVDSQTAMVVVNAAYFKGKWMKKFSEEETKES 180
Query: 164 IITVLSSE--------------------LNAHILEVPYKGGNMSMFFLLPPFASQDGVGD 203
V +E L ILE+P+ ++SMF LLP +
Sbjct: 181 PFRVNKTETKPVQMMYMEATFNMGNIESLKMKILELPFANKDLSMFILLPDEVT------ 234
Query: 204 ILAALKKDPTSFKRFTE--DSQNLKP--VEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPG 259
L L+ + ++++ + + V++ +P+F + + +L L LG+KD FS G
Sbjct: 235 GLEKLESE-INYEKLNKWTSPSTMAEAKVKVYLPRFKMEKMYDLKSVLESLGMKDAFSEG 293
Query: 260 -ADLSRLTDSH-IAFGDAVHKARLDLDEQGTTAAAAT-AVFAFRSSRPLEPVRYEANHPF 316
A+ S ++++ +A + +HKA L+++E GT AA T AV RS + + A+HPF
Sbjct: 294 RANFSGMSETKGLALSNVIHKASLEINEDGTEAAEVTGAVMLQRSVKE----EFNADHPF 349
Query: 317 LYFLVDKEIQSILFAGVFNEP 337
L+ + + ILF G F+ P
Sbjct: 350 LFIIRHNKTNCILFFGKFSSP 370
>gnl|CDD|239004 cd02049, bacterial_SERPIN, SERine Proteinase INhibitors (serpins),
prokaryotic subgroup. Little information about specific
functions is available for this subgroup, most likely
they are inhibitory members of the serpin superfamily.
In general, serpins exhibit conformational polymorphism
shifting from native to cleaved, latent, delta, or
polymorphic forms. Many serpins, such as antitrypsin and
antichymotrypsin, function as serine protease
inhibitors.
Length = 364
Score = 135 bits (343), Expect = 5e-37
Identities = 92/379 (24%), Positives = 150/379 (39%), Gaps = 70/379 (18%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPE-NLDKLD 59
F F L + LN + KN+F+SP SI AL Y ++ T + + L L +L+ L+
Sbjct: 7 RFGFKLFSELNKEDVEKNIFISPLSIALALSMTYNGADGTTRKEMLKALGLDNIDLEDLN 66
Query: 60 TMNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTAI----FPSEIQSMDFG 115
+ M++L D + N I++ +K + + + +DF
Sbjct: 67 SALATLMDQL-----NTHDKTVELIIANSIWIEPGFTLKPDFLQTIKDYYQAYVLELDF- 120
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVLWL----------------PSTQ 159
AA IN WV ++TK I ++ + V++L ST
Sbjct: 121 QSPAAAEEINRWVKEKTKGKIDKIVD----KIDPDDVMFLINAVYFKGDWQEPFDKQSTY 176
Query: 160 ESIII--------ITVLSSELNAHILE--------VPYKGGNMSMFFLLPPFASQDGVGD 203
E+ + +S N LE +PY G +SM+ LP
Sbjct: 177 EAPFYLPDGSTKEVPFMSRTGNFRYLETPGFQAVRLPYGDGRLSMYVFLP---------- 226
Query: 204 ILAALKKDPTSFKRFT--EDSQNL------KPVEIAIPKFSLTQEMNLIPTLSDLGVKDL 255
F + E + + +++P+F L E+ L L LG+++
Sbjct: 227 ---KENVSLREFVKTLTAEKWRKWIEQFRMREGSLSLPRFQLEYEIELRDALKALGMEEA 283
Query: 256 FSPGADLSRLTDSHIAFGDAV-HKARLDLDEQGTTAAAATAVFAFRSSRPL-EPVRYEAN 313
F+P A + V HK ++++E+GT AAAAT+V +S P EP A+
Sbjct: 284 FTPDAADFSKLGEGNLYISKVIHKTFIEVNEEGTEAAAATSVEITETSAPAGEPFTMVAD 343
Query: 314 HPFLYFLVDKEIQSILFAG 332
PFL+ + D SILF G
Sbjct: 344 RPFLFAIRDNRTGSILFMG 362
>gnl|CDD|239003 cd02048, neuroserpin, Neuroserpin is a inhibitory member of the
SERine Proteinase INhibitor (serpin) family that reacts
preferentially with tissue-type plasminogen activator
(tPA). It is located in neurons in regions of the brain
where tPA is also found, suggesting that neuroserpin is
the selective inhibitor of tPA in the central nervous
system (CNS). This subgroup corresponds to clade I of
the serpin superfamily.
Length = 388
Score = 120 bits (303), Expect = 4e-31
Identities = 92/380 (24%), Positives = 157/380 (41%), Gaps = 53/380 (13%)
Query: 1 EFTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDT 60
E + DL L + + +N+ SP S AL + + ++ L D L
Sbjct: 6 ELSVDLYNALRASKEDENIIFSPLSTALALGMVELGAKGSALKEIRHSLGY----DGLKN 61
Query: 61 MNVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKE----CMTAIFPSEIQSMDFGN 116
+ K + + + F N +++ + VKE F + ++ +DF
Sbjct: 62 GEEFSFLKDLSSMITAKEKEYVFNLANSLYLQNGFHVKEKFLQSNKKYFNAAVKLVDFSQ 121
Query: 117 EVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVL---------W------------- 154
A IN WV T N IKD+ ++ T LVL W
Sbjct: 122 VKAVAEHINKWVENHTNNKIKDMFSSRDFTPLTRLVLVNALYFKGNWKSQFRPENTRTFS 181
Query: 155 LPSTQESIIIITVL-----------SSELNA-----HILEVPYKGGNMSMFFLLPPFASQ 198
ES + I ++ S N +LE+PY+G +S+ +L Q
Sbjct: 182 FTKDDESEVQIPMMYQQGEFYYGEFSDGSNEAGGIYQVLELPYEGDEISLMIILS---RQ 238
Query: 199 DGVGDILAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSP 258
+ L L K P + + + VE+ +P+F + Q+++L L +LG+ ++FS
Sbjct: 239 EVPLATLEPLVKAPLIEEWANSVKK--QKVEVYLPRFKVEQKIDLKDVLKNLGITEIFSG 296
Query: 259 GADLSRLTDS-HIAFGDAVHKARLDLDEQGTTAAAATAVFAFRSSRPLEPVRYEANHPFL 317
GADLS ++DS + HK L+++E+G+ AAA++ + A L P + +HPF
Sbjct: 297 GADLSGISDSKELYVSKVFHKVFLEVNEEGSEAAASSGMIAISRMAVLYP-QVIVDHPFF 355
Query: 318 YFLVDKEIQSILFAGVFNEP 337
+ + ++ SILF G P
Sbjct: 356 FLIRNRRTGSILFMGRVMHP 375
>gnl|CDD|238998 cd02043, plant_SERPIN, SERine Proteinase INhibitors (serpins),
plant specific subgroup. It has been suggested that
plant serpins play a role in defense against insect
predators. This subgroup corresponds to clade P of the
serpin superfamily. In general, serpins exhibit
conformational polymorphism shifting from native to
cleaved, latent, delta, or polymorphic forms. Many
serpins, such as antitrypsin and antichymotrypsin,
function as serine protease inhibitors which regulate
blood coagulation cascades. Non-inhibitory serpins
perform many diverse functions such as chaperoning
proteins or transporting hormones.
Length = 381
Score = 117 bits (296), Expect = 4e-30
Identities = 106/377 (28%), Positives = 166/377 (44%), Gaps = 55/377 (14%)
Query: 8 TVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTMNVYKME 67
V A KG NV SP SI AL + T L L P + D+L +
Sbjct: 13 HVAAAAGKGSNVIFSPLSINVALSLVAAGARGETLDQLLSFLGSP-STDELHAV----AA 67
Query: 68 KLIQGLRANADS--GLTFTSTNKIFVNDKIPVK----ECMTAIFPSEIQSMDFGNEVEAA 121
++ + A+A + G + N ++V+ + +K + + +E + +DF + E
Sbjct: 68 SIVDLVLADASASGGPRLSFANGVWVDKSLSLKPSFKDLAANSYKAEARPVDFRTKAEEV 127
Query: 122 RA-INSWVAQETKNNIKDLIATGQVNSRTNLVL---------W-----LPSTQESI---- 162
R +NSWV + T IKD++ G V+S T LVL W T++
Sbjct: 128 RREVNSWVEKATNGLIKDILPPGSVDSSTKLVLANALYFKGAWSSKFDASDTKDRDFHLL 187
Query: 163 ----IIITVLSSELNAHI--------LEVPYKGGN------MSMFFLLPPFASQDGVGDI 204
+ + +SSE + ++ L +PYK G SM+ LP +DG+ D+
Sbjct: 188 DGTSVRVPFMSSEKDQYVAAFDGFKVLRLPYKRGGHDDARQFSMYIYLP--DKKDGLADL 245
Query: 205 LAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSR 264
L L +P R S+ + IPKF + L LG+ F PG L
Sbjct: 246 LEKLVSEPGFLDRHIPASEQ-EVGAFMIPKFKFSFGFEASEVLKKLGLTLPFDPGGALLS 304
Query: 265 L--TDSHIAFGDAV-HKARLDLDEQGTTAAAATA-VFAFRSSRPLEPVRYEANHPFLYFL 320
+ + + +V HKA +++DE+GT AAAATA V + SS P PV + A+HPFL+ +
Sbjct: 305 MSSPEGENLYVSSVYHKACVEVDEEGTEAAAATAVVMSGTSSPPPRPVDFVADHPFLFLI 364
Query: 321 VDKEIQSILFAGVFNEP 337
+ + +LF G P
Sbjct: 365 REDKTGVVLFLGQVMNP 381
>gnl|CDD|239000 cd02045, antithrombin-III_like, Antithrombin is a serine proteinase
inhibitor (serpin) which controls the process of
coagulation. It is the most important anticoagulant
molecule in mammalian circulation systems, controlled by
its interaction with the co-factor, heparin, which
accelerates its interaction with target proteases, such
as thrombin and factor Xa. This subgroup corresponds to
clade C of the serpin superfamily.
Length = 381
Score = 114 bits (286), Expect = 7e-29
Identities = 92/362 (25%), Positives = 161/362 (44%), Gaps = 50/362 (13%)
Query: 14 NKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTMNVYKMEKLIQGL 73
+ +N+F+SP SI A + NT L +V + +K + KL L
Sbjct: 25 SNDENIFLSPLSISTAFAMTKLGACNNTLEQLMEVFQFDTISEKTSDQVHFFFAKLNCRL 84
Query: 74 RANADSGLTFTSTNKIFVNDKIPVKECMTAI----FPSEIQSMDFGNEVEAAR-AINSWV 128
A+ S N++F + + E I + +++ +DF + E +R IN W+
Sbjct: 85 YRKANKSSELISANRLFGDKSLTFNETYQDISEIVYGAKLWPLDFKEKPELSRITINEWI 144
Query: 129 AQETKNNIKDLIATGQVNSRTNLVL-----------------------WLPSTQESIIII 165
A +T+N I D+I G +++ T LVL + + E +
Sbjct: 145 ANKTENRITDVIPEGAIDTNTVLVLVNAIYFKGLWKSKFDKENTRKDLFHKAPGEKCPVP 204
Query: 166 TVLS---------SELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDILAALKKDPTSFK 216
+ E +LE+PYKG +++M +LP G L+ ++++ T
Sbjct: 205 MMYQESKFRYAKIPEDKVQVLELPYKGDDITMVLILPK------EGTTLSEVEQNLTL-D 257
Query: 217 RFTEDSQNLKPVEIA--IPKFSLTQEMNLIPTLSDLGVKDLFSP-GADLSRLTD---SHI 270
+ +K +A IP+F + ++ L +G++DLFSP A L + + +
Sbjct: 258 KLQGWLDAMKETTLAVQIPRFRVEDSFSVKEQLQKMGLEDLFSPENAKLPGIVAGGRTDL 317
Query: 271 AFGDAVHKARLDLDEQGTTAAAATAVFAFRSSRPLEPVRYEANHPFLYFLVDKEIQSILF 330
DA HKA L+++E+G+ A+AATAV S + + + AN PFL F+ + I +I+F
Sbjct: 318 YVSDAFHKAFLEVNEEGSEASAATAVVITGRSLNINRIIFVANRPFLLFIREVAINAIIF 377
Query: 331 AG 332
G
Sbjct: 378 MG 379
>gnl|CDD|239006 cd02051, PAI-1_nexin-1, Plasminogen activator inhibitor-1_like.
Plasminogen activator inhibitor-1 (PAI-1) is the
primary, fast-acting inhibitor of plasminogen
activators. It is often bound to vitronectin, an
abundant component of the extracellular matrix in many
tissues. Protease nexin-1 is a potent serpin able to
inhibit thrombin, plasmin, and plasminogen activators.
PAI-1 and nexin-1 are members of the serpin superfamily
and represent clade E. In general, SERine Proteinase
INhibitors (serpins) exhibit conformational polymorphism
shifting from native to cleaved, latent, delta, or
polymorphic forms. Many serpins, such as antitrypsin
and antichymotrypsin, function as serine protease
inhibitors which regulate blood coagulation cascades.
Non-inhibitory serpins perform many diverse functions
such as chaperoning proteins or transporting hormones.
Length = 377
Score = 105 bits (264), Expect = 8e-26
Identities = 96/372 (25%), Positives = 158/372 (42%), Gaps = 66/372 (17%)
Query: 13 ANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTMNVYKMEKLIQG 72
A +NV VSP I L ++ T+ L+ V+R N V K K +
Sbjct: 25 ARPQENVVVSPHGIASVLGMLQLGADGKTKKQLQTVMRYKIN-------GVAKALKKLNK 77
Query: 73 L---RANADSGLTFTSTNKIFVNDKIPVKECMTA----IFPSEIQSMDFGNEVEAARAIN 125
+ N D T+ N +F ++ +F E++S+DF + AA +IN
Sbjct: 78 AIVSKKNKD---IVTTANAVFAQSGFKMEVPFVPRNKEVFQCEVKSVDFSDPETAAFSIN 134
Query: 126 SWVAQETKNNIKDLIATGQ-VNSRTNLVL---------W----LPST------------- 158
WV ETK I +L++ ++ T LVL W P +
Sbjct: 135 DWVKNETKGMIDNLLSPDLADDALTRLVLVNALYFKGLWKSRFQPESTKKRTFHAGDGKT 194
Query: 159 -------QESIIIITVLSS--ELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDILAALK 209
Q S+ S+ L +I+E+PY G ++SM LP S I
Sbjct: 195 YQVPMLAQLSVFRSGSASTPNGLWYNIIELPYHGESISMLIALPTEKSTPLSAIIPHIST 254
Query: 210 KDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPG-ADLSRLTDS 268
K S+ + K +++ +PKF++ E +L L LG+ D+F A+ ++++ S
Sbjct: 255 KTIQSWMG----TMVPKRMQLVLPKFTVEAETDLKEPLKALGITDMFDQSKANFTKISRS 310
Query: 269 ---HIAFGDAVHKARLDLDEQGTTAAAATAVFAFRSSRPLEPVRYEANHPFLYFLVDKEI 325
H++ A+ KA+++++E GT A+AAT S P + + PFL+F+
Sbjct: 311 ESLHVS--HALQKAKIEVNEDGTKASAATTAILIARSSPPW---FIVDRPFLFFIRHNPT 365
Query: 326 QSILFAGVFNEP 337
+ILF G N+P
Sbjct: 366 GTILFMGQINKP 377
>gnl|CDD|239012 cd02057, maspin_like, Maspin (mammary serine proteinase inhibitor),
a member of the serpin superfamily, with a multitude of
effects on cells and tissues at an assortment of
developmental stages. Maspin has tumor suppressing
activity against breast and prostate cancer. In general,
SERine Proteinase INhibitors (serpins) exhibit
conformational polymorphism shifting from native to
cleaved, latent, delta, or polymorphic forms. Many
serpins, such as antitrypsin and antichymotrypsin,
function as serine protease inhibitors which regulate
blood coagulation cascades. Non-inhibitory serpins
perform many diverse functions such as chaperoning
proteins or transporting hormones.
Length = 372
Score = 97.7 bits (243), Expect = 6e-23
Identities = 92/386 (23%), Positives = 167/386 (43%), Gaps = 71/386 (18%)
Query: 2 FTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLD----- 56
F DL L NV SP + +L A + +T + +VL D
Sbjct: 8 FAVDLFKKLCEKEPTGNVVFSPICLSTSLALAQVGAKGDTANEIGKVLHFENVKDVPFGF 67
Query: 57 KLDTMNVYKME-----KLIQGLRANADSGLTFTSTNKIFVND-KIPVKECMTAIFPSEIQ 110
+ T +V K+ KLI+ R D L + F+N K P +P E++
Sbjct: 68 QTVTSDVSKLSSFYSLKLIK--RLYVDKSLNLS---TDFINSTKRP--------YPKELE 114
Query: 111 SMDFGNEVEAARA-INSWVAQETKNNIKDLIATGQVNSRTNLVL---------WLPSTQE 160
++DF +++E R IN+ + + T + ++++ VN +T +++ W+ E
Sbjct: 115 TVDFKDKLEETRGQINNSIKELTDGHFENILNENSVNDQTKILVVNAAYFVGNWMKKFPE 174
Query: 161 SII-------------------IITVLS----SELNAHILEVPYKGGNMSMFFLLPPFAS 197
S + S ELN ILE+P++ ++SM LLP
Sbjct: 175 SETKECPFRVNKTETKPVQMMNLEATFSMGYIDELNTKILELPFQNKHLSMLILLPKDIE 234
Query: 198 QDGVGDILAALKKD--PTSFKRFTEDSQ--NLKPVEIAIPKFSLTQEMNLIPTLSDLGVK 253
+ G L L+K S ++T S N K V++++PKF + + ++L L LG+K
Sbjct: 235 DESTG--LEKLEKQLTSESLSQWTNPSMMANAK-VKVSLPKFKVEKMIDLKAMLESLGLK 291
Query: 254 DLFSPGA-DLSRLTDSH-IAFGDAVHKARLDLDEQGTTAAAATAVFAFRSSRPLEPVRYE 311
+F+ A D S ++++ +A + +HK L+++E G + + +
Sbjct: 292 HIFNEDASDFSGMSETKGVALSNVIHKVCLEVNEDGGESIEVPG-----ARILQHKDEFN 346
Query: 312 ANHPFLYFLVDKEIQSILFAGVFNEP 337
A+HPF++ + + ++I+F G F P
Sbjct: 347 ADHPFIFIIRHNKTRNIIFFGRFCSP 372
>gnl|CDD|239010 cd02055, PZI, Protein Z-dependent protease inhibitor (ZPI) is a
member of the serpin superfamily of proteinase
inhibitors (clade A10). ZPI inhibits coagulation factor
Xa , dependent on protein Z (PZ), a vitamin K-dependent
plasma protein. ZPI also inhibits factor XIa in a
process that does not require PZ. In general, SERine
Proteinase INhibitors (serpins) exhibit conformational
polymorphism shifting from native to cleaved, latent,
delta, or polymorphic forms.
Length = 365
Score = 97.7 bits (243), Expect = 7e-23
Identities = 94/373 (25%), Positives = 154/373 (41%), Gaps = 60/373 (16%)
Query: 2 FTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTM 61
F F+LL + + G N+ SPF + A+ + TE + + L +L L
Sbjct: 9 FGFNLLRKIAMKHDG-NIIFSPFGMSLAMAGLLLAAEGETERQIAKAL----HLHALKDR 63
Query: 62 NVYKMEKLIQGLRANADSG--LTFTSTNKIFVNDKIPVKECMTAI----FPSEIQSMDFG 115
+ + L +GL+ N L FT F++ VKE + F E MDF
Sbjct: 64 DPGLLPALFKGLKDNISRNEELGFTQGIFAFIHKDFDVKEAFFNLSKQYFDMECLCMDFQ 123
Query: 116 NEVEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVL---------WL----------- 155
N +A IN + +ETK I +L +++ + L+L WL
Sbjct: 124 NASQAKFLINHNIKKETKGKIPELFD--EIDPESKLILLDYIFFKGKWLTPFDPEFTEID 181
Query: 156 ------------PSTQESIIIITVLSSELNAHILEVPYKGGNMSMFFLLPPFASQDGVGD 203
P + + H++++PYKG +M ++ + D
Sbjct: 182 TFHIDKYKSIKVPMMFGADKFASTFDENFRCHVIKLPYKG-KATMLIVIM-----EKGED 235
Query: 204 ILAALKKDPTSFKRFTEDSQNLKP--VEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGAD 261
LA +D + N+K ++I PKF L Q+ + L LG+K++F+P AD
Sbjct: 236 HLAL--EDHLTMDLVESWLANMKSRNMDIFFPKFKLDQKYEMHELLRALGIKNIFAPFAD 293
Query: 262 LSRL--TDSHIAFGDAVHKARLDLDEQGTTAAAATAVFAFRSSRPLEPVRYEANHPFLYF 319
LS L H+ + KA +++DE+GT AAAA S P PV + + PF +
Sbjct: 294 LSELLADGKHLQVSQVLQKAVIEVDEKGTEAAAAIGSEIIAFSMP--PV-IKVDRPFHFM 350
Query: 320 LVDKEIQSILFAG 332
+ ++ +LF G
Sbjct: 351 IFEETFGMLLFIG 363
>gnl|CDD|239007 cd02052, PEDF, Pigment epithelium-derived factor (PEDF)_like. PEDF
is non-inhibitory member of the Serpin superfamily. It
exhibits neurotrophic, neuroprotective and
antiangiogenic properties and is widely expressed in the
developing and adult nervous systems. This subgroup
corresponds to clade F1 of the serpin superfamily.
Length = 374
Score = 96.1 bits (239), Expect = 2e-22
Identities = 92/385 (23%), Positives = 167/385 (43%), Gaps = 81/385 (21%)
Query: 2 FTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTM 61
F +DL + + NVF+SP SI AL + + TE+ + + L + L+ +
Sbjct: 22 FGYDLYRQQASRDPTANVFLSPLSIATALSQLSLGAGERTESQIHRALYY-DLLNDPELH 80
Query: 62 NVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTAIFPSEIQSMDFGNEVEAA 121
+ YK L+ L A A S ++I + K+ ++ ++F N+VE +
Sbjct: 81 DTYK--DLLASLTAPAKG---LKSASRILLERKLRLR-------------LEFVNQVEKS 122
Query: 122 ---------------RAINSWVAQETKNNI----KDLIA------------TGQ----VN 146
+ IN WV Q+T + K++ GQ +
Sbjct: 123 YGERPRILAGNALDLQEINDWVQQQTGGKVDRFVKEIPRNVSILLLGSAYFKGQWITKFD 182
Query: 147 SRTNLVLWLPSTQESIIIITVLS-----------SELNAHILEVPYKGGNMSMFFLLPPF 195
R ++ ++ +++ ++S S+LN I ++P GG +S+ F LP
Sbjct: 183 KRNTVLTDFHLDEQRTVVVPMMSDPNAPVRYGLDSDLNCKIAQLPLTGG-VSIMFFLPDK 241
Query: 196 ASQDGVGDILAALKKDPTSFKRFTED-SQNLKPVE--IAIPKFSLTQEMNLIPTLSDLGV 252
+Q+ L +++ TS F D + LK V+ + +PK L+ E L+P+L +L +
Sbjct: 242 VTQN-----LTLIEESLTS--EFVHDIDRELKTVKAVLTLPKLKLSYETELLPSLQELKL 294
Query: 253 KDLFSPGADLSRLTDSHIAFGDAVHKARLDLDEQGTTAAAATAVFAFRSSRPLEPVRYEA 312
+ LF+ D +++T I HKA L+L+E G A ++ P+ Y
Sbjct: 295 QSLFAS-PDFTKITSKPIKLSHVHHKAVLELNEDGAETAPTPGS----ATALTFPLEYHV 349
Query: 313 NHPFLYFLVDKEIQSILFAGVFNEP 337
+ PFL+ L D++ ++LF G +P
Sbjct: 350 DRPFLFVLRDEDTGALLFIGKVLDP 374
>gnl|CDD|239008 cd02053, alpha2AP, Alpha2-antiplasmin (alpha2AP) is the primary
inhibitor of plasmin, a proteinase that digests fibrin,
the main component of blood clots. Alpha2-Antiplasmin
forms an inactive 1 : 1 stoichiometric complex with
plasmin. It also rapidly crosslinks to fibrin during
blood clotting by activated coagulation factor XIII, and
as a consequence fibrin becomes more resistant to
fibrinolysis. Therefore alpha2AP is important in
modulating the effectiveness and persistence of fibrin
with respect to its susceptibility to digestion and
removal by plasmin. This subgroup corresponds to clade
F2 of the serpin superfamily.
Length = 351
Score = 93.7 bits (233), Expect = 1e-21
Identities = 86/368 (23%), Positives = 155/368 (42%), Gaps = 63/368 (17%)
Query: 2 FTFDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTM 61
F+ DLL+ + + N+ +SP SI AL + TE L + L E+L L
Sbjct: 8 FSTDLLSEVAQESTKPNLILSPLSIALALSHLALGAQNETEQRLLKTLHA-ESLPCLH-- 64
Query: 62 NVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMT----AIFPSEIQSMDFGNE 117
+ + +L Q L ++++ +KE ++ ++ S+ G +
Sbjct: 65 --HLLSRLRQDL-----GPGALRLATRMYLQKGFEIKESFLEESEKLYGAKPVSLT-GTK 116
Query: 118 VEAARAINSWVAQETKNNIKDLIATGQVNSRTNLVL---------W-------------- 154
+ IN WV + T+ I + ++ + T L+L W
Sbjct: 117 EDDLANINKWVKEATEGQIPNFLS--DLPHDTVLLLLNAIHFKGFWRNKFDPSLTQRDAF 174
Query: 155 LPSTQESIIIITVLSS----------ELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDI 204
++ + + +S + + + P+KG NMS F +L P V +
Sbjct: 175 HLDDDFTVSVEMMQASTYPLRWFHLEQPEIQVAKFPFKG-NMS-FVVLMPTPFTWNVSQV 232
Query: 205 LAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSR 264
LA L D ++R ++ +P ++ +PK L ++ L LS LG+++LF DLS
Sbjct: 233 LANLNWD-DLYRRLPKE----RPTKVKLPKLKLDYQLELNEALSQLGLQELFQ-APDLSG 286
Query: 265 LTDSHIAFGDAVHKARLDLDEQGTTAAAATAVFAFRSSRPLEPVRYEANHPFLYFLVDKE 324
++D + H++ L+L E+G A+AAT+V RS + N PFL+F+ +
Sbjct: 287 ISDEPLFVSSVQHQSTLELSEKGVEASAATSVATSRSLS-----SFSVNRPFLFFIFEDT 341
Query: 325 IQSILFAG 332
+ LF G
Sbjct: 342 MGLPLFMG 349
>gnl|CDD|239002 cd02047, HCII, Heparin cofactor II (HCII) inhibits thrombin, the
final protease of the coagulation cascade. HCII is
allosterically activated by binding to cell surface
glycosaminoglycans (GAGs). The specificity of HCII for
thrombin is conferred by a highly acidic hirudin-like
N-terminal tail, which becomes available after GAG
binding for interaction with the anion-binding exosite I
of thrombin. This subgroup corresponds to clade D of the
serpin superfamily.
Length = 436
Score = 91.1 bits (226), Expect = 2e-20
Identities = 94/379 (24%), Positives = 162/379 (42%), Gaps = 58/379 (15%)
Query: 2 FTFDLLTVL-NNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLD---K 57
F F+L VL + N N+ ++P I A+ T+ + L + ++ K
Sbjct: 72 FGFNLYRVLKDQVNTSDNILLAPVGISTAMGMISLGLKGQTQEQVLSTLGFKDFVNASSK 131
Query: 58 LDTMNVYKM-EKLIQGL-RANADSGLTFTSTNKIFVNDKIPV----KECMTAIFPSEIQS 111
+ V+ + KL L R N G T S N +++ P+ K + + +E Q
Sbjct: 132 YEITTVHNLFRKLTHRLFRRNF--GYTLRSVNDLYIKKDFPILLDFKNNVKTYYFAEAQI 189
Query: 112 MDFGNEVEAARAINSWVAQETKNNIKDLIA----------------------------TG 143
DF + + N+ + + TK IK+ + T
Sbjct: 190 ADFSDPAFITKT-NNRIQKLTKGLIKEALENVDPATLMMILNCIYFKGTWENKFPVEMTH 248
Query: 144 QVNSRTN--LVLWLPSTQESIIIITVLSSELNAHILEVPYKGGNMSMFFLLPPFASQDGV 201
N R N V+ +P Q + EL+ IL++PY G N+SM ++P S
Sbjct: 249 NRNFRLNEKEVVKVPMMQTKGNFLAAADPELDCDILQLPYVG-NISMLIVVPHKLSG--- 304
Query: 202 GDILAALKKD--PTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPG 259
+ L+K P +R+ + N + E+ +PKF L + NLI +L +G+ DLF+
Sbjct: 305 ---MKTLEKQITPQVVERWQKSMTN-RTREVVLPKFKLEKNYNLIESLKLMGITDLFTEK 360
Query: 260 ADLSRLTDSHIAFGDAVHKARLDLDEQGTTAAAATAV-FAFRSSRPLEPVRYEANHPFLY 318
+++ ++D IA H+ + ++E+GT AAA T V F S++ VR+ + PFL+
Sbjct: 361 GNMAGVSDEKIAIDLFKHQGTITVNEEGTEAAAVTTVGFMPLSTQ----VRFIVDRPFLF 416
Query: 319 FLVDKEIQSILFAGVFNEP 337
+ + +LF G P
Sbjct: 417 LIYEHRTNCLLFMGRVANP 435
>gnl|CDD|239005 cd02050, C1_inh, C1 inhibitor (C1-Inh) is a protease inhibitor of
the serpin family. It plays a pivotal role in regulating
the activation of the classical complement pathway and
of the contact system, via regulating bradykinin
formation, inhibiting factor XII and kallikrein of the
contact system, and via acting on factor XI in the
coagulation cascade. This subgroup corresponds to clade
G of the serpin superfamily.
Length = 352
Score = 77.9 bits (192), Expect = 4e-16
Identities = 87/362 (24%), Positives = 139/362 (38%), Gaps = 78/362 (21%)
Query: 17 KNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTMNVYKMEKLIQGLRAN 76
N+ SP SI L + T+ L+ +L P + + ++ L+
Sbjct: 21 TNLLFSPVSIALLLSHLLLGARGKTQRRLESILSYPHDF--------ACVHSALKKLKNK 72
Query: 77 ADSGLTFTSTNKIFVNDKIPVKECMTAIFPSEIQSMDF---------GNEVEAARAINSW 127
S ++IF + + ++E T +S F N INSW
Sbjct: 73 LG----LLSASQIFHHPDLHLRESFTN------ESWQFYKARPRELSNNSELNLEMINSW 122
Query: 128 VAQETKNNIKDLIATGQVNSRTNLVL---------W-LPSTQESIIIITVLSSELNAHIL 177
VA+ T N I L+ + S T LVL W + +L + N +
Sbjct: 123 VAKATNNKIPRLLD--SLPSETRLVLLNAVYFQAQWKKKFDTKHT---VLLPFKRNGDPV 177
Query: 178 EVP------YK------------------GGNMSMFFLLPPFASQDGVGDILAALKKDPT 213
+VP Y G +S+ L+P +D + + AL P
Sbjct: 178 KVPVMYSKKYPVASFTDPRLKAQVGRLELSGGLSLVVLVPRGPKED-LEAVERAL--TPP 234
Query: 214 SFKRFTEDSQNLKPV--EIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRLT-DSHI 270
+F E P E+ +P+ L ++++ + LG+ LF A+L L D +
Sbjct: 235 AFLAMLEKMAANTPQRTEVTLPRIKLDLAVDMVALMHKLGLFGLFL-DANLCGLYQDPEL 293
Query: 271 AFGDAVHKARLDLDEQGTTAAAATAVFAFRSSRPLEPVRYEANHPFLYFLVDKEIQSILF 330
A A H+A L L E+G AAAATA R++ + +EA PFL+ L D + + LF
Sbjct: 294 AVDAAQHRAVLTLTEKGVEAAAATATSFARTA-----LSFEALQPFLFVLWDDQAKVPLF 348
Query: 331 AG 332
G
Sbjct: 349 MG 350
>gnl|CDD|239009 cd02054, angiotensinogen, Angiotensinogen is part of the
renin-angiotensin system (RAS), which plays an important
role in blood pressure regulation, renal haemodynamics,
fluid and electrolyte homeostasis. It is also involved
in normal and abnormal growth processes. The growth
promoting actions of angiotensin have been shown in a
variety of cells and tissues. This subgroup represents
clade A8 of the serpin superfamily. In general, SERine
Proteinase INhibitors (serpins) exhibit conformational
polymorphism shifting from native to cleaved, latent,
delta, or polymorphic forms. Many serpins, such as
antitrypsin and antichymotrypsin, function as serine
protease inhibitors which regulate blood coagulation
cascades. Non-inhibitory serpins perform many diverse
functions such as chaperoning proteins or transporting
hormones.
Length = 372
Score = 76.8 bits (189), Expect = 1e-15
Identities = 81/371 (21%), Positives = 143/371 (38%), Gaps = 58/371 (15%)
Query: 10 LNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLP---ENLD---KLDTMNV 63
L+ N +SP S++ L + Y ++K T +L+ +L LP +N D ++D V
Sbjct: 17 LSELWVHTNTLLSPTSVFGTLASLYLGASKKTADSLQALLGLPWKSKNSDCTSRVDGHKV 76
Query: 64 YKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECM---TAIFP--SEIQSMDFGNEV 118
+ IQ L L ++ F I + + A F S +S+DF
Sbjct: 77 LSTLQAIQSLVDAQGRQLLLSTVVWTFTAPGIHLSQPFVQGLADFSDASFPRSVDFTEPD 136
Query: 119 EAARAINSWVAQETKNNIKDLIATGQVNSRTNLVL--------------WLPSTQESII- 163
A IN++V + +K + ++ ++L+ L QE +
Sbjct: 137 VAEEKINNFVQATSDGKVKSSLK--GLSPDSDLLFATSVHFQGNWKTASQLEEPQEFWVD 194
Query: 164 IITVLSSELNAH---------------ILEVPYKGGNMSMFFLLPPFASQDGVGDILAAL 208
T +S + +H I ++P + + P S + + L
Sbjct: 195 NNTSVSVPMLSHTGTFKYLSDIQDNFSITQLPL-SKRACLLLVQPHEGSD--LDKVEGKL 251
Query: 209 KKDPTSFKRFTEDSQNLKP--VEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPGADLSRLT 266
+ +S +NL P +E+ +PKFSL +L L+ + + L A+LS+L+
Sbjct: 252 PQQNSS-----NWLKNLSPRTIELTLPKFSLQGSYDLQDLLAQMELPALLGSEANLSKLS 306
Query: 267 DSHIAFGDAVHKARLDLDEQGTTAAAATAVFAFRSSRPLEPVRYEANHPFLYFLVDKEIQ 326
+ G ++K +L E GT +T LE N PFL+ + +
Sbjct: 307 NDRFTVGKVLNKVFFELSEDGTEVQESTQ--QLNKPEVLE---VTLNRPFLFAVYEANSN 361
Query: 327 SILFAGVFNEP 337
+ILF G P
Sbjct: 362 AILFLGRVTNP 372
>gnl|CDD|165258 PHA02948, PHA02948, serine protease inhibitor-like protein;
Provisional.
Length = 373
Score = 50.8 bits (121), Expect = 4e-07
Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 17/175 (9%)
Query: 165 ITVLSSELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDILAALKKDPTSFKRFTEDSQ- 223
IT+ E + ++ +PYK N+SM+ +GD + T+ K SQ
Sbjct: 214 ITIDDEEYD--MVRLPYKDANISMYL---------AIGDNMTHFTDSITAAKLDYWSSQL 262
Query: 224 NLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSP-GADLSRLTDSHIAFGDAVHKARLD 282
K + +P+FS+ + + I +++++ +F+P A +T + A++D
Sbjct: 263 GNKVYNLKLPRFSIENKRD-IKSIAEMMAPSMFNPDNASFKHMTRDPLYIYKMFQNAKID 321
Query: 283 LDEQGTTAAAATAVFAFRSSRPLEPVRYEANHPFLYFLVDKEIQSILFAGVFNEP 337
+DEQGT A A+T + A S P E E N PF++ + ILF G P
Sbjct: 322 VDEQGTVAEASTIMVATARSSPEE---LEFNTPFVFIIRHDITGFILFMGKVESP 373
>gnl|CDD|239001 cd02046, hsp47, Heat shock protein 47 (Hsp47), also called
colligin, because of its collagen binding ability, is a
chaperone specific for procollagen. It has been shown to
be essential for collagen biosynthesis, but its exact
function is still unclear. Hsp47 is a non-inhibitory
member of the SERPIN superfamily and corresponds to
clade H.
Length = 366
Score = 47.2 bits (112), Expect = 5e-06
Identities = 78/367 (21%), Positives = 145/367 (39%), Gaps = 52/367 (14%)
Query: 4 FDLLTVLNNANKGKNVFVSPFSIYQALLTAYFISNKNTEANLKQVLRLPENLDKLDTMNV 63
F+L + +N+ +SP + +L +T + K VL + DKL +V
Sbjct: 12 FNLYHAMAKDKGVENILLSPVVVASSLGLVSMGGKASTASQAKAVL----SADKLKDEHV 67
Query: 64 YK-MEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTAI----FPSEIQSMDFGNEV 118
+ + +L+ + + +T+ N+++ + + + E ++F ++
Sbjct: 68 HTGLSELLNEVSNSTARNVTWKIGNRLYGPSSVSFADDFVKNSKKHYNYEHSKINFRDKR 127
Query: 119 EAARAINSWVAQETKNNI----KDLIATG---------------------QVNSRTNLV- 152
A +IN W AQ T + KD+ T V++R +V
Sbjct: 128 SALNSINEWAAQTTDGKLPEVTKDVEKTDGALIVNAMFFKPHWDEKFHHKMVDNRGFMVT 187
Query: 153 ----LWLPSTQESIIIITVLSSELNAHILEVPYKGGNMSMFFLLPPFASQDGVGDILAAL 208
+ +P + + E I+E+P SM F++P + L L
Sbjct: 188 RSYTVSVPMMHRTGLYGYYDDEENKLQIVEMPLAHKLSSMIFIMPYHV------EPLERL 241
Query: 209 KKDPTSFKRFTEDSQ-NLKPVEIAIPKFSLTQEMNLIPTLSDLGVKDLFSPG-ADLSRLT 266
+K T + T S+ + V I++PK SL +L L DLG+ + ADLS+++
Sbjct: 242 EKLLTREQLKTWISKMKKRAVAISLPKVSLEVSHDLQKHLGDLGLTEAIDKSKADLSKIS 301
Query: 267 -DSHIAFGDAVHKARLDLDEQGTTAAAATAVFAFRSSRPLEPVRYEANHPFLYFLVDKEI 325
+ + H A L+ D +G + P + A+HPF++ + D +
Sbjct: 302 GKKDLYLSNVFHAAALEWDTEGNPFDPDI----YGREEMRNPKLFYADHPFIFLVKDNKT 357
Query: 326 QSILFAG 332
SILF G
Sbjct: 358 NSILFIG 364
>gnl|CDD|165039 PHA02660, PHA02660, serpin-like protein; Provisional.
Length = 364
Score = 42.3 bits (99), Expect = 2e-04
Identities = 74/301 (24%), Positives = 117/301 (38%), Gaps = 65/301 (21%)
Query: 88 KIFVNDKIPVKECMTAIFPS---EIQSMDFGNEVEAAR-AINSWVAQETKNNIKD----- 138
K++V+ +P+ A ++ D N E R +IN WV ++T NI +
Sbjct: 78 KVYVDSHLPIHSAFVASMNDMGIDVILADLANHAEPIRRSINEWVYEKT--NIINFLHYM 135
Query: 139 ------LIATGQVNSRTNLVLWLPSTQESIIIITVLSSEL----------------NAHI 176
+I Q N T I I +S + ++I
Sbjct: 136 PDTSILIINAVQFNGLWKYPFLRKKTTMDIFNIDKVSFKYVNMMTTKGIFNAGRYHQSNI 195
Query: 177 LEVPYKGGNMS-MFFLLPPFASQDGVGDILAALKKDPTSFKRFTEDSQNLKPVEIAIPKF 235
+E+PY + S M+ + P S D + + + D + K F S+ K +EI+IPKF
Sbjct: 196 IEIPYDNCSRSHMWIVFPDAISNDQLNQLENMMHGD--TLKAFKHASRK-KYLEISIPKF 252
Query: 236 SLTQEMNLIPTLSDLGVKDLFSPGADLSRLTDSHIAFGDA-----------VHKARLDLD 284
+ N L G+K LF+ +LSR+ I GD K L++D
Sbjct: 253 RIEHSFNAEHLLPSAGIKTLFT-NPNLSRM----ITQGDKEDDLYPLPPSLYQKIILEID 307
Query: 285 EQGTTAAAATAVFAFRSSRPLEP-----VRYEA---NHPFLYFLVDKEIQSILFAGVFNE 336
E+GT R + E R E+ N PF+ F+++ E ILF G +
Sbjct: 308 EEGTNTKNIAK--KMRRNPQDEDTQQHLFRIESIYVNRPFI-FIIEYE-NEILFIGRISI 363
Query: 337 P 337
P
Sbjct: 364 P 364
>gnl|CDD|129557 TIGR00465, ilvC, ketol-acid reductoisomerase. This is the second
enzyme in the parallel isoleucine-valine biosynthetic
pathway [Amino acid biosynthesis, Pyruvate family].
Length = 314
Score = 33.9 bits (78), Expect = 0.095
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 203 DILAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIP 245
+++ L+K S+K+ TED + VE AIP+ L MNL+P
Sbjct: 28 NVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLI--MNLLP 68
>gnl|CDD|234999 PRK02101, PRK02101, hypothetical protein; Validated.
Length = 255
Score = 29.0 bits (66), Expect = 3.5
Identities = 27/113 (23%), Positives = 38/113 (33%), Gaps = 29/113 (25%)
Query: 188 MFFLLPPFASQDGVGDILAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIPTL 247
M L+ P + D G L D S + SQ L + L
Sbjct: 1 MLILISPAKTLDYDGP----LDTDRLSQPELLDQSQEL------------------LDAL 38
Query: 248 SDLGVKDLFSPGADLSRLTDSHIAFGDAVHKARLDLDEQGTTAAAATAVFAFR 300
+L DL A L +++D +A D + TTA A A+ AF
Sbjct: 39 RELSPDDL----ASLMKISDK-LA--GLNAARFQDWQPEFTTANARPAILAFT 84
>gnl|CDD|224165 COG1244, COG1244, Predicted Fe-S oxidoreductase [General function
prediction only].
Length = 358
Score = 28.9 bits (65), Expect = 3.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 226 KPVEIAIPKFSLTQEMNLIPTLS 248
K V AI KFSLTQ++N++
Sbjct: 307 KRVADAIRKFSLTQDVNVLEVYE 329
>gnl|CDD|106256 PRK13296, PRK13296, tRNA CCA-pyrophosphorylase; Provisional.
Length = 360
Score = 28.8 bits (64), Expect = 4.3
Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 19/113 (16%)
Query: 42 EANLKQVLRLPENLDKLD----TMNVYKMEKLIQGLRANAD-SGLTFTSTNKIFVNDKIP 96
E N + + L ++L + D ++ + + K+I AD T+ F+ D P
Sbjct: 75 EVNFSKYITLEDDLKRRDLTINSIAIDQNNKVIDPFNGQADLQNRILRHTSIAFIED--P 132
Query: 97 VKECMTAIFPSEIQSMDFGNEVEAARAINSWVAQETKNNIKDLIATGQVNSRT 149
++ A F +++ + +F +AQE IK+L+ TG++N T
Sbjct: 133 LRVVRLARFKAQLSNFNFS------------IAQEMLALIKELVKTGELNHLT 173
>gnl|CDD|225213 COG2334, COG2334, Putative homoserine kinase type II (protein
kinase fold) [General function prediction only].
Length = 331
Score = 28.5 bits (64), Expect = 5.5
Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 14/63 (22%)
Query: 255 LFSPGADLSRLTDSHIAFGDAVHKAR----------LDLDEQGTTAAAATAVFAFRSSRP 304
LF D+S D F DA + + DE AA A + + RP
Sbjct: 210 LFDDDTDVSGFID----FDDAGYGWFIYDLAIALNAWNGDEADPRAAIAAFLEGYEEVRP 265
Query: 305 LEP 307
L
Sbjct: 266 LTA 268
>gnl|CDD|219733 pfam08163, NUC194, NUC194 domain. This is domain B in the
catalytic subunit of DNA-dependent protein kinases.
Length = 394
Score = 28.2 bits (63), Expect = 7.1
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 27 YQALLTAYFISNKNTEANLKQVLRLPENLDKLDTMNVYKMEKLI 70
Y AL+ IS TE V EN +K N + E LI
Sbjct: 133 YNALIAL--ISCTFTELKFYHVFLFRENPEK----NEFLWENLI 170
>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase.
Length = 499
Score = 28.2 bits (63), Expect = 7.5
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
Query: 62 NVYKMEKLIQGLRANADSGLTFTSTNKIFVNDKIPVKECMTAIFPSEIQSMDFGNEVEAA 121
N+ ++ K G++ D G F + +F + P + G E++ A
Sbjct: 266 NLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNT--------KRLNLEAVGVELDKA 317
Query: 122 RAINSWVAQETKNNIKDLIATGQVNSRTNL 151
A+ V + ++ NI + A G V +R NL
Sbjct: 318 GAVK--VDEYSRTNIPSIWAIGDVTNRINL 345
>gnl|CDD|223137 COG0059, IlvC, Ketol-acid reductoisomerase [Amino acid transport
and metabolism / Coenzyme metabolism].
Length = 338
Score = 27.9 bits (63), Expect = 8.3
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 203 DILAALKKDPTSFKRFTEDSQNLKPVEIAIPKFSLTQEMNLIP 245
+++ L+K +S+K+ ED + VE A + + M L+P
Sbjct: 43 NVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVV--MILLP 83
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.376
Gapped
Lambda K H
0.267 0.0798 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,242,016
Number of extensions: 1648547
Number of successful extensions: 1468
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1387
Number of HSP's successfully gapped: 53
Length of query: 342
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 244
Effective length of database: 6,590,910
Effective search space: 1608182040
Effective search space used: 1608182040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)