BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7904
(181 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z4R|A Chain A, Human Gcn5 Acetyltransferase
Length = 168
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/101 (70%), Positives = 82/101 (81%)
Query: 15 SICFRMFPTQGFTEIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHFLTFAAKDAIGY 74
ICFRMFPTQGFTEIVFCAV + QV GYGT++MNHLKEYH KH I +FLT+A + AIGY
Sbjct: 68 GICFRMFPTQGFTEIVFCAVTSNEQVKGYGTHLMNHLKEYHIKHNILYFLTYADEYAIGY 127
Query: 75 FTRQGFTKDIKLPKHLYEGYIKDYEDAMLMHCEIDKRIVYT 115
F +QGF+KDIK+PK Y GYIKDYE A LM CE++ RI YT
Sbjct: 128 FKKQGFSKDIKVPKSRYLGYIKDYEGATLMECELNPRIPYT 168
>pdb|1CM0|B Chain B, Crystal Structure Of The PcafCOENZYME-A Complex
pdb|1CM0|A Chain A, Crystal Structure Of The PcafCOENZYME-A Complex
Length = 168
Score = 148 bits (374), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 69/101 (68%), Positives = 83/101 (82%)
Query: 15 SICFRMFPTQGFTEIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHFLTFAAKDAIGY 74
ICFRMFP+QGFTEIVFCAV + QV GYGT++MNHLKEYH KH+I +FLT+A + AIGY
Sbjct: 67 GICFRMFPSQGFTEIVFCAVTSNEQVKGYGTHLMNHLKEYHIKHDILNFLTYADEYAIGY 126
Query: 75 FTRQGFTKDIKLPKHLYEGYIKDYEDAMLMHCEIDKRIVYT 115
F +QGF+K+IK+PK Y GYIKDYE A LM CE++ RI YT
Sbjct: 127 FKKQGFSKEIKIPKTKYVGYIKDYEGATLMGCELNPRIPYT 167
>pdb|1YGH|A Chain A, Hat Domain Of Gcn5 From Saccharomyces Cerevisiae
pdb|1YGH|B Chain B, Hat Domain Of Gcn5 From Saccharomyces Cerevisiae
Length = 164
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 67/101 (66%), Gaps = 1/101 (0%)
Query: 15 SICFRMFPTQGFTEIVFCAVNCSVQVLGYGTYMMNHLKEY-HKKHEIYHFLTFAAKDAIG 73
I +R F + F EIVFCA++ + QV GYG ++MNHLK+Y I +FLT+A AIG
Sbjct: 62 GITYRPFDKREFAEIVFCAISSTEQVRGYGAHLMNHLKDYVRNTSNIKYFLTYADNYAIG 121
Query: 74 YFTRQGFTKDIKLPKHLYEGYIKDYEDAMLMHCEIDKRIVY 114
YF +QGFTK+I L K ++ GYIKDYE LM C + RI Y
Sbjct: 122 YFKKQGFTKEITLDKSIWMGYIKDYEGGTLMQCSMLPRIRY 162
>pdb|5GCN|A Chain A, Catalytic Domain Of Tetrahymena Gcn5 Histone
Acetyltransferase In Complex With Coenzyme A
Length = 166
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 65/102 (63%)
Query: 15 SICFRMFPTQGFTEIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHFLTFAAKDAIGY 74
ICFR + Q F E+ F AV + QV GYGT +MN K++ +K I + LT+A AIGY
Sbjct: 65 GICFRQYKPQRFAEVAFLAVTANEQVRGYGTRLMNKFKDHMQKQNIEYLLTYADNFAIGY 124
Query: 75 FTRQGFTKDIKLPKHLYEGYIKDYEDAMLMHCEIDKRIVYTH 116
F +QGFTK+ ++P+ ++GYIKDY+ LM C I + Y +
Sbjct: 125 FKKQGFTKEHRMPQEKWKGYIKDYDGGTLMECYIHPYVDYGN 166
>pdb|1QSN|A Chain A, Crystal Structure Of Tetrahymena Gcn5 With Bound Coenzyme
A And Histone H3 Peptide
pdb|1QSR|A Chain A, Crystal Structure Of Tetrahymena Gcn5 With Bound Acetyl-
Coenzyme A
pdb|1Q2C|A Chain A, Crystal Structure Of Tetrahymena Gcn5 With Bound Coenzyme
A And A 19- Residue Histone H4 Peptide
pdb|1Q2D|A Chain A, Crystal Structure Of Tetrahymena Gcn5 With Bound Coenzyme
A And A 19-Residue P53 Peptide
Length = 162
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 64/100 (64%)
Query: 15 SICFRMFPTQGFTEIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHFLTFAAKDAIGY 74
ICFR + Q F E+ F AV + QV GYGT +MN K++ +K I + LT+A AIGY
Sbjct: 61 GICFRQYKPQRFAEVAFLAVTANEQVRGYGTRLMNKFKDHMQKQNIEYLLTYADNFAIGY 120
Query: 75 FTRQGFTKDIKLPKHLYEGYIKDYEDAMLMHCEIDKRIVY 114
F +QGFTK+ ++P+ ++GYIKDY+ LM C I + Y
Sbjct: 121 FKKQGFTKEHRMPQEKWKGYIKDYDGGTLMECYIHPYVDY 160
>pdb|1M1D|A Chain A, Tetrahymena Gcn5 With Bound Bisubstrate Analog Inhibitor
pdb|1M1D|C Chain C, Tetrahymena Gcn5 With Bound Bisubstrate Analog Inhibitor
pdb|1PU9|A Chain A, Crystal Structure Of Tetrahymena Gcn5 With Bound Coenzyme
A And A 19-Residue Histone H3 Peptide
pdb|1PUA|A Chain A, Crystal Structure Of Tetrahymena Gcn5 With Bound Coenzyme
A And A Phosphorylated, 19-Residue Histone H3 Peptide
Length = 163
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 64/100 (64%)
Query: 15 SICFRMFPTQGFTEIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHFLTFAAKDAIGY 74
ICFR + Q F E+ F AV + QV GYGT +MN K++ +K I + LT+A AIGY
Sbjct: 62 GICFRQYKPQRFAEVAFLAVTANEQVRGYGTRLMNKFKDHMQKQNIEYLLTYADNFAIGY 121
Query: 75 FTRQGFTKDIKLPKHLYEGYIKDYEDAMLMHCEIDKRIVY 114
F +QGFTK+ ++P+ ++GYIKDY+ LM C I + Y
Sbjct: 122 FKKQGFTKEHRMPQEKWKGYIKDYDGGTLMECYIHPYVDY 161
>pdb|1QST|A Chain A, Crystal Structure Of Tetrahymena Gcn5
Length = 160
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 64/100 (64%)
Query: 15 SICFRMFPTQGFTEIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHFLTFAAKDAIGY 74
ICFR + Q F E+ F AV + QV GYGT +MN K++ +K I + LT+A AIGY
Sbjct: 61 GICFRQYKPQRFAEVAFLAVTANEQVRGYGTRLMNKFKDHMQKQNIEYLLTYADNFAIGY 120
Query: 75 FTRQGFTKDIKLPKHLYEGYIKDYEDAMLMHCEIDKRIVY 114
F +QGFTK+ ++P+ ++GYIKDY+ LM C I + Y
Sbjct: 121 FKKQGFTKEHRMPQEKWKGYIKDYDGGTLMECYIHPYVDY 160
>pdb|3KRE|A Chain A, Crystal Structure Of
Phosphoribosylaminoimidazole-succinocarboxamide Synthase
From Ehrlichia Chaffeensis At 1.8a Resolution
Length = 263
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 7/145 (4%)
Query: 36 CSVQVLGYGTYMMNHLKEYHKKHEIYHFLTFAAKDAIGYFTRQGFTKDIKLPKHLYE-GY 94
Q G G+ M N K Y K +I F T + I +F + + K ++E G
Sbjct: 12 LEAQTQGPGS-MENKEKIYEGKAKII-FATLNPLEVIQHFKDEITAFNNKKAAIIHEKGI 69
Query: 95 IKDYEDAMLMHCEIDKRIVYTHFVSVTQSQKHIINYITEQKLERV-QGVQPGLKCFSEDC 153
+ +Y + LM IDK I THF+S+ ++ ++ IT +E V + + G FS+
Sbjct: 70 LNNYISSFLMKKLIDKGI-KTHFISLLNQREQLVKKITIIPIEVVIRNLAAG--NFSKRF 126
Query: 154 AICSCNLTVKRTVKYCRKYQNIRDP 178
I +++ K + DP
Sbjct: 127 QIADGTPFKSPIIEFYYKNDELSDP 151
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 29.3 bits (64), Expect = 1.2, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 2 VPLKLWCLGILWISICFRMFPT 23
VPL L C+ IL+I +C +FP+
Sbjct: 808 VPLPLGCITILFIELCTDIFPS 829
>pdb|3EY5|A Chain A, Putative Acetyltransferase From Gnat Family From
Bacteroides Thetaiotaomicron
Length = 181
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 33 AVNCSVQVLGYGTYMMNHLKEYHKKH---EIYHFLTFAAKDAIGYFTRQGFT 81
A N +++ GYG + HL E+ K+ E+ + AK I ++ R GFT
Sbjct: 80 ATNPALRNGGYGKRTLEHLCEFLKRPIVLEVERPVEEXAKRRINFYQRHGFT 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.142 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,658,767
Number of Sequences: 62578
Number of extensions: 223814
Number of successful extensions: 634
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 625
Number of HSP's gapped (non-prelim): 16
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 48 (23.1 bits)