RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7904
(181 letters)
>1z4r_A General control of amino acid synthesis protein 5-like 2; GCN5,
acetyltransferase, SGC, structural genomics, structural
genomics consortium; HET: ACO; 1.74A {Homo sapiens}
SCOP: d.108.1.1 PDB: 1cm0_B*
Length = 168
Score = 147 bits (371), Expect = 1e-45
Identities = 71/100 (71%), Positives = 82/100 (82%)
Query: 16 ICFRMFPTQGFTEIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHFLTFAAKDAIGYF 75
ICFRMFPTQGFTEIVFCAV + QV GYGT++MNHLKEYH KH I +FLT+A + AIGYF
Sbjct: 69 ICFRMFPTQGFTEIVFCAVTSNEQVKGYGTHLMNHLKEYHIKHNILYFLTYADEYAIGYF 128
Query: 76 TRQGFTKDIKLPKHLYEGYIKDYEDAMLMHCEIDKRIVYT 115
+QGF+KDIK+PK Y GYIKDYE A LM CE++ RI YT
Sbjct: 129 KKQGFSKDIKVPKSRYLGYIKDYEGATLMECELNPRIPYT 168
>1ygh_A ADA4, protein (transcriptional activator GCN5); transcriptional
regulation, histone acetylation; 1.90A {Saccharomyces
cerevisiae} SCOP: d.108.1.1
Length = 164
Score = 141 bits (356), Expect = 2e-43
Identities = 52/101 (51%), Positives = 67/101 (66%), Gaps = 1/101 (0%)
Query: 16 ICFRMFPTQGFTEIVFCAVNCSVQVLGYGTYMMNHLKEY-HKKHEIYHFLTFAAKDAIGY 74
I +R F + F EIVFCA++ + QV GYG ++MNHLK+Y I +FLT+A AIGY
Sbjct: 63 ITYRPFDKREFAEIVFCAISSTEQVRGYGAHLMNHLKDYVRNTSNIKYFLTYADNYAIGY 122
Query: 75 FTRQGFTKDIKLPKHLYEGYIKDYEDAMLMHCEIDKRIVYT 115
F +QGFTK+I L K ++ GYIKDYE LM C + RI Y
Sbjct: 123 FKKQGFTKEITLDKSIWMGYIKDYEGGTLMQCSMLPRIRYL 163
>1qst_A TGCN5 histone acetyl transferase; GCN5-related N-acetyltransferase,
COA binding protein; HET: EPE; 1.70A {Tetrahymena
thermophila} SCOP: d.108.1.1 PDB: 1m1d_A* 1pu9_A*
1pua_A* 5gcn_A* 1qsr_A* 1q2d_A* 1q2c_A* 1qsn_A*
Length = 160
Score = 130 bits (328), Expect = 3e-39
Identities = 46/99 (46%), Positives = 64/99 (64%)
Query: 16 ICFRMFPTQGFTEIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHFLTFAAKDAIGYF 75
ICFR + Q F E+ F AV + QV GYGT +MN K++ +K I + LT+A AIGYF
Sbjct: 62 ICFRQYKPQRFAEVAFLAVTANEQVRGYGTRLMNKFKDHMQKQNIEYLLTYADNFAIGYF 121
Query: 76 TRQGFTKDIKLPKHLYEGYIKDYEDAMLMHCEIDKRIVY 114
+QGFTK+ ++P+ ++GYIKDY+ LM C I + Y
Sbjct: 122 KKQGFTKEHRMPQEKWKGYIKDYDGGTLMECYIHPYVDY 160
>2atr_A Acetyltransferase, GNAT family; MCSG, structural genomics, PSI,
protein structure INIT midwest center for structural
genomics; 2.01A {Streptococcus pneumoniae} SCOP:
d.108.1.1
Length = 138
Score = 38.3 bits (89), Expect = 3e-04
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Query: 16 ICFRMFPTQGFTEIVFC--AVNCSVQVLGYGTYMMNHLKEYHKKHEIYHFLTFAAKDAIG 73
+ GF+ + V S Q G G+ +M K+ T + +G
Sbjct: 54 VGLIRLVGDGFSSVFVQDLIVLPSYQRQGIGSSLMKEALGNFKEAYQVQLATEETEKNVG 113
Query: 74 YFTRQGFTK 82
++ GF
Sbjct: 114 FYRSMGFEI 122
>3ey5_A Acetyltransferase-like, GNAT family; structural genomics, APC60148,
GNAT famil protein structure initiative; 2.15A
{Bacteroides thetaiotaomicron}
Length = 181
Score = 36.5 bits (84), Expect = 0.002
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 26 FTEIVFCAVNCSVQVLGYGTYMMNHLKEYHKK---HEIYHFLTFAAKDAIGYFTRQGFTK 82
F + A N +++ GYG + HL E+ K+ E+ + AK I ++ R GFT
Sbjct: 73 FYYVEHFATNPALRNGGYGKRTLEHLCEFLKRPIVLEVERPVEEMAKRRINFYQRHGFT- 131
Query: 83 DIKLPKHLYEGYIKDYEDAMLMH 105
K Y+ K+ +D + M+
Sbjct: 132 --LWEKDYYQPPYKEGDDFLPMY 152
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.003
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Query: 133 EQKLERVQGVQPGLKCFSEDCAICSCNLTVKRTVK 167
+Q L+++Q LK +++D A L +K T++
Sbjct: 19 KQALKKLQA---SLKLYADDSAPA---LAIKATME 47
>1mk4_A Hypothetical protein YQJY; alpha-beta-alpha sandwich, structural
genomics, PSI, protein structure initiative; 1.70A
{Bacillus subtilis} SCOP: d.108.1.1
Length = 157
Score = 34.7 bits (80), Expect = 0.006
Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 7/84 (8%)
Query: 29 IVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHFLTFAAKD---AIGYFTRQGFTKDIK 85
I F V+ + + G + + E K+ + +I Y T+ GF +
Sbjct: 71 IHFSGVHPDFRKMQIGKQLYDVFIETVKQRGCTRVKCVTSPVNKVSIAYHTKLGFDIEKG 130
Query: 86 LPKHLYEGYIKDY----EDAMLMH 105
+Y +D +L
Sbjct: 131 TKTVNGISVFANYDGPGQDRVLFV 154
>1y7r_A Hypothetical protein SA2161; structural genomics, protein structure
initiative, PSI, midwest center for structural genomics;
1.70A {Staphylococcus aureus} SCOP: d.108.1.1
Length = 133
Score = 33.3 bits (76), Expect = 0.014
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 26 FTEIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEI--YHFLTFAAKDAIGYFTRQGFTKD 83
+IV AV S Q YG+ +M H+ +Y K + + A A + + GF
Sbjct: 63 VFQIVDIAVLKSYQGQAYGSLIMEHIMKYIKNVSVESVYVSLIADYPADKLYVKFGFMPT 122
>2r7h_A Putative D-alanine N-acetyltransferase of GNAT FA; putative
acetyltransferase of the GNAT family; 1.85A
{Desulfovibrio desulfuricans subsp}
Length = 177
Score = 32.8 bits (75), Expect = 0.033
Identities = 15/101 (14%), Positives = 36/101 (35%), Gaps = 15/101 (14%)
Query: 16 ICFRMFPTQGFT-EIVFCAVNCSVQVLGYGTYMMNHLKEYHKKH-------EIYHFLTFA 67
C+ P T ++ + AV Q G G ++ + + E +A
Sbjct: 83 ACYGPTPATEGTYDLYWIAVAPHRQHSGLGRALLAEVVHDVRLTGGRLLFAETSGIRKYA 142
Query: 68 AKDAIGYFTRQGFTKDIKLPKHLYEGYIKDYEDAMLMHCEI 108
++ R GF+ + + + + + +D ++ E+
Sbjct: 143 P--TRRFYERAGFSAE-----AVLKAFYRAGDDKIIYRLEV 176
>2oh1_A Acetyltransferase, GNAT family; YP_013287.1, structural genom joint
center for structural genomics, JCSG, protein structu
initiative; HET: MSE UNL; 1.46A {Listeria monocytogenes
str}
Length = 179
Score = 32.5 bits (74), Expect = 0.037
Identities = 8/65 (12%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 32 CAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHFL--TFAA-KDAIGYFTRQGFTK-DIKLP 87
V+ + + M+ ++ + + + + + R GF K
Sbjct: 109 IMVSRAFSGISLSKQMIYFAEKLGIEMSVPFIRLDCIESNETLNQMYVRYGFQFSGKKNG 168
Query: 88 KHLYE 92
+LY+
Sbjct: 169 FYLYQ 173
>3s6f_A Hypothetical acetyltransferase; acyl-COA N-acyltransferases,
structural genomics, joint CENT structural genomics,
JCSG; HET: MSE COA; 1.19A {Deinococcus radiodurans}
Length = 145
Score = 32.1 bits (73), Expect = 0.037
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 26 FTEIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHFLTFAAKDAIGYFTRQGFTKD 83
I V + LG G+ +M + ++Y D + ++ R G +
Sbjct: 73 AASIPLLEVQAGWRSLGLGSELMRRVLTELG--DLYMVDLSCDDDVVPFYERLGLKRA 128
>2jdc_A Glyphosate N-acetyltransferase; GNAT; HET: CAO; 1.6A {Bacillus
licheniformis} SCOP: d.108.1.1 PDB: 2bsw_A* 2jdd_A*
Length = 146
Score = 32.1 bits (73), Expect = 0.039
Identities = 12/69 (17%), Positives = 24/69 (34%)
Query: 13 WISICFRMFPTQGFTEIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHFLTFAAKDAI 72
+ Q ++ A + G+ ++ H +E +K A A
Sbjct: 56 FHQAEHSELQGQKQYQLRGMATLEGYREQKAGSSLIKHAEEILRKRGADLLWCNARTSAS 115
Query: 73 GYFTRQGFT 81
GY+ + GF+
Sbjct: 116 GYYKKLGFS 124
>4ag7_A Glucosamine-6-phosphate N-acetyltransferase; HET: COA; 1.55A
{Caenorhabditis elegans} PDB: 4ag9_A*
Length = 165
Score = 32.2 bits (73), Expect = 0.053
Identities = 9/76 (11%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
Query: 9 LGILWISICFRMFPTQG-FTEIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHFLTFA 67
+ + + + G + V+ ++ G ++ L K +Y
Sbjct: 82 VASASLVVEMKFIHGAGSRGRVEDVVVDTEMRRQKLGAVLLKTLVSLGKSLGVYKISLEC 141
Query: 68 AKDAIGYFTRQGFTKD 83
+ + ++++ GF D
Sbjct: 142 VPELLPFYSQFGFQDD 157
>3t9y_A Acetyltransferase, GNAT family; PSI-biology, structural genomics,
midwest center for structu genomics, MCSG; HET: PGE;
2.00A {Staphylococcus aureus}
Length = 150
Score = 31.7 bits (72), Expect = 0.058
Identities = 10/80 (12%), Positives = 28/80 (35%), Gaps = 5/80 (6%)
Query: 9 LGILWISICFRMFPTQGFTEIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYH-FLTFA 67
+G+ + + I+ ++ + GYG ++ +E+ K+ L
Sbjct: 63 IGLSGMCKMMFYEKNAEYMRILAFVIHSEFRKKGYGKRLLADSEEFSKRLNCKAITLNSG 122
Query: 68 AK----DAIGYFTRQGFTKD 83
+ A ++ G+ +
Sbjct: 123 NRNERLSAHKLYSDNGYVSN 142
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.072
Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 60/196 (30%)
Query: 2 VPLKLWCLGILWISICFRMFPTQGFTEIV-----FCAVNCSVQVLGYGTYMMNHLKEYHK 56
+P L L ++W + +V + V + + +L+ K
Sbjct: 387 IPTIL--LSLIWFDV-----IKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-YLELKVK 438
Query: 57 KHEIY--HFLTFAAKDAIG-YFTRQGFTKDIKLPKHLYEGYIKDYEDAMLMHCEIDKRIV 113
Y H + + Y + F D +P +L + Y + I
Sbjct: 439 LENEYALH------RSIVDHYNIPKTFDSDDLIPPYL-DQYFYSH-------------IG 478
Query: 114 YTHFVSVTQSQKHII--------NYITEQKLERVQGVQPGLKCFSEDCAICSCNLTVKRT 165
+ H ++ ++ + ++ EQK+ D + + ++ T
Sbjct: 479 H-HLKNIEHPERMTLFRMVFLDFRFL-EQKIRH-------------DSTAWNASGSILNT 523
Query: 166 VKYCRKYQN-IRDPDD 180
++ + Y+ I D D
Sbjct: 524 LQQLKFYKPYICDNDP 539
Score = 31.0 bits (69), Expect = 0.24
Identities = 22/135 (16%), Positives = 51/135 (37%), Gaps = 30/135 (22%)
Query: 31 FCAVNCSVQVL-GYG-TYMMNHLK--EYHKKHEIYH--FLTFA---AK---DAIGYFTRQ 78
F + + L Y +++ +HLK E+ ++ ++ FL F K D+ +
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 79 GFT---KDIKL-PKHL------YEGYIKDYEDAMLMHCEIDKRIVYTHFVSVTQ---SQK 125
+ +K ++ YE + D L E + ++ + + + + +
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAILD-FLPKIE--ENLICSKYTDLLRIALMAE 575
Query: 126 HIINYITEQKLERVQ 140
I E+ ++VQ
Sbjct: 576 D--EAIFEEAHKQVQ 588
Score = 30.2 bits (67), Expect = 0.44
Identities = 24/181 (13%), Positives = 49/181 (27%), Gaps = 54/181 (29%)
Query: 10 GILWISI--CFRMFPTQGFTEIVFCAVNCSVQVLGYGTYMMNHLKEY-HKKHEIYHFLTF 66
I W+++ C ++ Q+ T +H + H I L
Sbjct: 183 KIFWLNLKNCNSP------ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 67 AAKDAIGYFTRQGFTK------DIKLPKHLYEGYIKDYEDAMLMHCEIDKRIVYTHFVSV 120
+ + +++ K +A + C +I+ +
Sbjct: 237 -------LLKSKPYENCLLVLLNVQNAKAW---------NAFNLSC----KIL------L 270
Query: 121 TQSQKHIINYITEQKLERVQGVQPGLKCFSEDCAICSCNLTVKRTVKYCRKYQNIRDPDD 180
T K + ++++ + S LT KY + R P D
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHH------------SMTLTPDEVKSLLLKYLDCR-PQD 317
Query: 181 L 181
L
Sbjct: 318 L 318
Score = 26.7 bits (58), Expect = 5.2
Identities = 9/66 (13%), Positives = 22/66 (33%), Gaps = 16/66 (24%)
Query: 48 MNHLKEYHKKHEIYHFLTFAAKDAIGYFTRQGFTKDIKLPKHLYEGY--IKDYEDAMLMH 105
+N L+ + +++ L ++ F +P L D M++
Sbjct: 363 LNVLEPAEYR-KMFDRL------SV-------FPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 106 CEIDKR 111
++ K
Sbjct: 409 NKLHKY 414
>2ck3_G ATP synthase subunit gamma\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: c.49.2.1 PDB: 1cow_G*
1bmf_G* 1e1q_G* 1e1r_G* 1efr_G* 1e79_G* 1h8h_G* 1nbm_G*
1ohh_G* 1qo1_G 1w0j_G* 1w0k_G* 1h8e_G* 2jiz_G* 2jj1_G*
2jj2_G* 2v7q_G* 2wss_G* 2xnd_G* 2w6j_G ...
Length = 272
Score = 31.7 bits (73), Expect = 0.082
Identities = 13/97 (13%), Positives = 25/97 (25%), Gaps = 16/97 (16%)
Query: 48 MNHLKEYHKKHEIYHFLTFAAKDAIGYFTRQGFTKDIKLPKHLYEGYIKDYEDA------ 101
+ + + K R + + + DA
Sbjct: 90 KSEAANLAAAGKEVKIIGVGDK-IRSILHRT-HSDQFLVTFKEVGRRPPTFGDASVIALE 147
Query: 102 -MLMHCEIDK-RIVYTHFVSVTQSQKHIINYITEQKL 136
+ E D+ I++ F SV S K E+ +
Sbjct: 148 LLNSGYEFDEGSIIFNRFRSV-ISYK-----TEEKPI 178
>2fiw_A GCN5-related N-acetyltransferase:aminotransferase II;
alpha-beta-alpha sandwich, GCN4-related
acetyltransferase, S genomics, PSI; HET: ACO; 2.35A
{Rhodopseudomonas palustris} SCOP: d.108.1.1
Length = 172
Score = 31.3 bits (71), Expect = 0.091
Identities = 7/40 (17%), Positives = 18/40 (45%)
Query: 42 GYGTYMMNHLKEYHKKHEIYHFLTFAAKDAIGYFTRQGFT 81
GT +++ L++ A+ +A +F ++G+
Sbjct: 98 DVGTTLIDALEKLAGARGALILTVDASDNAAEFFAKRGYV 137
>3oaa_G ATP synthase gamma chain; rossmann fold, hydrolase,
hydrolase-transport PROT complex; HET: ANP ADP; 3.26A
{Escherichia coli DH1}
Length = 286
Score = 31.7 bits (73), Expect = 0.096
Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 27/92 (29%)
Query: 48 MNHLKEYHKKHEIYHFLTFAAKDAIGYFTRQG---------------FTKDIKLPKHLYE 92
+ +K + K +K + +F G ++ I K + +
Sbjct: 99 LAEMKTWTDKGVQCDLAMIGSK-GVSFFNSVGGNVVAQVTGMGDNPSLSELIGPVKVMLQ 157
Query: 93 GYIKDYEDAMLMHCEIDK-RIVYTHFVSV-TQ 122
Y + +DK IV F++ +Q
Sbjct: 158 AYDEG---------RLDKLYIVSNKFINTMSQ 180
>2vez_A Putative glucosamine 6-phosphate acetyltransferase;
acyltransferase; HET: ACO G6P; 1.45A {Aspergillus
fumigatus} PDB: 2vxk_A*
Length = 190
Score = 31.4 bits (71), Expect = 0.11
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 8 CLGILWISICFRMFPTQG-FTEIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHFLTF 66
+G + + + + G I AV Q G ++ L +K Y +
Sbjct: 106 IVGTGSLVVERKFIHSLGMVGHIEDIAVEKGQQGKKLGLRIIQALDYVAEKVGCYKTILD 165
Query: 67 AAKDAIGYFTRQGFTK 82
++ G++ + GF +
Sbjct: 166 CSEANEGFYIKCGFKR 181
>2q0y_A GCN5-related N-acetyltransferase; YP_295895.1, acetyltransferase
(GNAT) family, structural genomics, joint center for ST
genomics; HET: MSE; 1.80A {Ralstonia eutropha JMP134}
Length = 153
Score = 30.9 bits (70), Expect = 0.13
Identities = 9/49 (18%), Positives = 20/49 (40%)
Query: 42 GYGTYMMNHLKEYHKKHEIYHFLTFAAKDAIGYFTRQGFTKDIKLPKHL 90
G G +MN + + I + A + + R G++ ++ K +
Sbjct: 103 GIGQALMNRAEAEFAERGIAFAVLHATEMGQPLYARMGWSPTTEMSKPI 151
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A
{Escherichia coli} SCOP: c.49.2.1
Length = 230
Score = 31.4 bits (72), Expect = 0.13
Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 15/86 (17%)
Query: 48 MNHLKEYHKKHEIYHFLTFAAKDAIGYFTRQGFTKDIKLPKHLYEGYIKDYEDAM----- 102
+ +K + K +K + +F G ++ + + + +
Sbjct: 82 LAEMKTWTDKGVQCDLAMIGSK-GVSFFNSVGGNVVAQV-TGMGD--NPSLSELIGPVKV 137
Query: 103 LMHC----EIDK-RIVYTHFVSV-TQ 122
++ +DK IV F++ +Q
Sbjct: 138 MLQAYDEGRLDKLYIVSNKFINTMSQ 163
>2kcw_A Uncharacterized acetyltransferase YJAB; GNAT fold, acyltransferase;
NMR {Escherichia coli}
Length = 147
Score = 30.5 bits (69), Expect = 0.14
Identities = 8/55 (14%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 28 EIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHFLTFAA-KDAIGYFTRQGFT 81
+ ++ V+ G G ++ H + + A+G++ + GF
Sbjct: 72 HMDALFIDPDVRGCGVGRVLVEHALSMAPELTTN---VNEQNEQAVGFYKKVGFK 123
>3e0k_A Amino-acid acetyltransferase; N-acetylglutamate synthase, structu
genomics, PSI-2, protein structure initiative; HET: MSE;
2.52A {Vibrio parahaemolyticus}
Length = 150
Score = 30.9 bits (70), Expect = 0.14
Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 3/80 (3%)
Query: 17 CFRMFPTQGFTEIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHFLTFAAKDAIGYFT 76
+ + E+ A++ + G ++N++K K I ++ +F
Sbjct: 59 ALYPYSEERKAEMACVAIHPDYRDGNRGLLLLNYMKHRSKSENINQIFVL-TTHSLHWFR 117
Query: 77 RQGFTK--DIKLPKHLYEGY 94
QGF + LP Y
Sbjct: 118 EQGFYEVGVDYLPGAKQGLY 137
>1i12_A Glucosamine-phosphate N-acetyltransferase; GNAT, alpha/beta; HET:
ACO; 1.30A {Saccharomyces cerevisiae} SCOP: d.108.1.1
PDB: 1i1d_A* 1i21_A
Length = 160
Score = 30.6 bits (69), Expect = 0.16
Identities = 6/42 (14%), Positives = 17/42 (40%)
Query: 42 GYGTYMMNHLKEYHKKHEIYHFLTFAAKDAIGYFTRQGFTKD 83
G G +++ L + Y + + + ++ + GF+
Sbjct: 111 GLGKLLIDQLVTIGFDYGCYKIILDCDEKNVKFYEKCGFSNA 152
>2qe7_G ATP synthase subunit gamma; blockage of ATP hydrolysis, F1-ATPase,
single analysis, thermoalkaliphilic, hydrolase; 3.06A
{Bacillus SP}
Length = 286
Score = 30.9 bits (71), Expect = 0.17
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 15/87 (17%)
Query: 47 MMNHLKEYHKKHEIYHFLTFAAKDAIGYFTRQGFTKDIKLPKHLYEGYIKDYEDA----- 101
+ ++E H+ + Y K +F ++G+ ++ + + +
Sbjct: 99 VSKTIEERHQSKDEYVIFAVGRK-GRDFFKKRGYPVVEEV-TGISD--TPSLTEIQDIAQ 154
Query: 102 ----MLMHCEIDK-RIVYTHFVSV-TQ 122
M DK I Y FVS Q
Sbjct: 155 SAIGMFADETFDKLTIFYNEFVSPIVQ 181
>2o28_A Glucosamine 6-phosphate N-acetyltransferase; structural genomics,
structural genomics consortium, SGC; HET: 16G COA; 1.80A
{Homo sapiens} PDB: 2huz_A* 3cxq_A* 3cxs_A 3cxp_A
Length = 184
Score = 30.7 bits (69), Expect = 0.18
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 42 GYGTYMMNHLKEYHKKHEIYHFLTFAAKDAIGYFTRQGFTKD 83
G +++ L KK Y +G++ + G+T
Sbjct: 132 QLGKLLLSTLTLLSKKLNCYKITLECLPQNVGFYKKFGYTVS 173
>3mgd_A Predicted acetyltransferase; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG; HET: ACO; 1.90A {Clostridium acetobutylicum}
Length = 157
Score = 30.5 bits (69), Expect = 0.18
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 42 GYGTYMMNHLKEYHKKHEIYHFLTFAAKDAIGYFTRQGFTK 82
G T M++ L K+ I+ A+K + + GF
Sbjct: 100 GIATGMLDRLVNEAKERNIHKICLVASKLGRPVYKKYGFQD 140
>2ob0_A Human MAK3 homolog; acetyltransferase, structural genomics
consortium, SGC; HET: ACO; 1.80A {Homo sapiens} PDB:
2psw_A* 3tfy_A*
Length = 170
Score = 30.4 bits (69), Expect = 0.21
Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 21/107 (19%)
Query: 16 ICFRMFPTQGFTE--IVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHFLT----FAAK 69
+C R+ +Q I+ + LG GT M+NH+ +K + + + +
Sbjct: 60 VCCRVDHSQNQKRLYIMTLGCLAPYRRLGIGTKMLNHVLNICEKDGTFDNIYLHVQISNE 119
Query: 70 DAIGYFTRQGFTKDIKLPKHLYEGYIKDY------EDAMLMHCEIDK 110
AI ++ + GF K+Y DA ++ +
Sbjct: 120 SAIDFYRKFGFEII---------ETKKNYYKRIEPADAHVLQKNLKV 157
>3t90_A Glucose-6-phosphate acetyltransferase 1; GNAT fold, glcnac
biosynthesis, alpha/beta protein; HET: EPE; 1.50A
{Arabidopsis thaliana}
Length = 149
Score = 29.8 bits (67), Expect = 0.25
Identities = 5/42 (11%), Positives = 16/42 (38%)
Query: 42 GYGTYMMNHLKEYHKKHEIYHFLTFAAKDAIGYFTRQGFTKD 83
G ++ L ++ K Y + + + ++ + G +
Sbjct: 99 QLGKKVVEFLMDHCKSMGCYKVILDCSVENKVFYEKCGMSNK 140
>3ddd_A Putative acetyltransferase; NP_142035.1, structural genomi center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: COA; 2.25A {Pyrococcus horikoshii}
Length = 288
Score = 30.3 bits (68), Expect = 0.28
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 8/77 (10%)
Query: 42 GYGTYMMNHLKEYHKKHEIYHFLTFAAKDAIGYFTRQGFTKDIKLPKHLYEGY------- 94
G GT + L E ++ L A+ G + + F + + ++
Sbjct: 102 GIGTEVFRRLLEIGRRKVDTIRLD-ASSQGYGLYKKFKFVDEYRTVRYELMERPIKRVEG 160
Query: 95 IKDYEDAMLMHCEIDKR 111
+ + EIDK+
Sbjct: 161 VVEVNKIPNWVKEIDKK 177
>1yvk_A Hypothetical protein BSU33890; ALPHS-beta protein, structural
genomics, PSI, protein structure initiative; HET: COA;
3.01A {Bacillus subtilis subsp} SCOP: d.108.1.1
Length = 163
Score = 29.7 bits (67), Expect = 0.29
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 28 EIVFCAVNCSVQVLGYGTYMMNHLKEYHKK---HEIYHFLTFAAKDAIGYFTRQGFTKDI 84
EIV AV S+Q G+G ++ E KK I ++ + + + GF
Sbjct: 65 EIVNIAVKESLQKKGFGKQLVLDAIEKAKKLGADTIEIGTGNSSIHQLSLYQKCGFRIQA 124
Query: 85 KLPKHLYEGYIKD-YEDAMLMHCEI 108
Y +D +E+ + +
Sbjct: 125 IDHDFFLRHYDEDIFENGIQCRDMV 149
>1z4e_A Transcriptional regulator; nysgxrc target T2017, GNAT fold,
structural genomics, PSI, P structure initiative; 2.00A
{Bacillus halodurans} SCOP: d.108.1.1
Length = 153
Score = 29.3 bits (66), Expect = 0.37
Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Query: 9 LGILWISIC-FRMFPTQGFTEIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHF-LTF 66
+G+L ++ + + I + + + G G+ ++ E K+ + LT
Sbjct: 67 VGMLQVTFTPYLTYQGSWRATIEGVRTHSAARGQGIGSQLVCWAIERAKERGCHLIQLTT 126
Query: 67 AAK--DAIGYFTRQGFTKD 83
+ DA+ ++ + GF
Sbjct: 127 DKQRPDALRFYEQLGFKAS 145
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem
bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS
factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Length = 265
Score = 29.9 bits (67), Expect = 0.40
Identities = 10/85 (11%), Positives = 30/85 (35%), Gaps = 16/85 (18%)
Query: 95 IKDYEDAMLMHCEIDKRIVYTHFVSVTQSQKHIINYIT-EQKLERVQGVQPGLKCFSEDC 153
++D + H ++ ++V ++ + ++ T + + + + P + F E
Sbjct: 26 MRDLPNTYPFHTPVNAKVVKDYYKII----TRPMDLQTLRENVR--KRLYPSREEFREH- 78
Query: 154 AICSCNLTVKRTVKYCRKYQNIRDP 178
++ VK Y +
Sbjct: 79 --------LELIVKNSATYNGPKHS 95
>1bo4_A Protein (serratia marcescens aminoglycoside-3-N-
acetyltransferase); eubacterial aminoglyco resistance,
GCN5-related N-acetyltransferase; HET: SPD COA; 2.30A
{Serratia marcescens} SCOP: d.108.1.1
Length = 168
Score = 29.4 bits (66), Expect = 0.43
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 42 GYGTYMMNHLKEYHKKHEIYH-FLTFAA--KDAIGYFTRQGFTKDI 84
G T ++N LK Y ++ A+ +T+ G +++
Sbjct: 121 GIATALINLLKHEANALGAYVIYVQADYGDDPAVALYTKLGIREEV 166
>2fia_A Acetyltransferase; structural genomics, PSI, protein structu
initiative, midwest center for structural genomics,
MCSG; 2.60A {Enterococcus faecalis} SCOP: d.108.1.1
Length = 162
Score = 29.4 bits (66), Expect = 0.43
Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 12/96 (12%)
Query: 16 ICFRMFPTQGFTEIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHF--LTFAA-KDAI 72
F M Q F + A + + GYG+ + + L++ T I
Sbjct: 65 ATFCMEQEQDFVWLKRFATSPNYIAKGYGSLLFHELEKRAVWEGRRKMYAQTNHTNHRMI 124
Query: 73 GYFTRQGFTK---------DIKLPKHLYEGYIKDYE 99
+F +GFTK +LY +++
Sbjct: 125 RFFESKGFTKIHESLQMNRLDFGSFYLYVKELENQS 160
>3pp9_A Putative streptothricin acetyltransferase; toxin production
resistance, infectious diseases, structural genomics;
HET: MSE ACO; 1.60A {Bacillus anthracis}
Length = 187
Score = 29.5 bits (66), Expect = 0.45
Identities = 13/92 (14%), Positives = 33/92 (35%), Gaps = 6/92 (6%)
Query: 16 ICFRMFPTQGFTEIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHFL--TFAA-KDAI 72
+ + + I V+ + LG G ++ K++ K+ + + T A
Sbjct: 92 VLKKNWNNYA--YIEDITVDKKYRTLGVGKRLIAQAKQWAKEGNMPGIMLETQNNNVAAC 149
Query: 73 GYFTRQGFTKDIKLPKHLYEGYIKDYEDAMLM 104
++ + GF +Y+G ++ +
Sbjct: 150 KFYEKCGFVIG-GFDFLVYKGLNMTSDEVAIY 180
>2ozh_A Hypothetical protein XCC2953; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 1.40A {Xanthomonas campestris PV}
Length = 142
Score = 29.1 bits (65), Expect = 0.49
Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 5/79 (6%)
Query: 7 WCLGILW--ISICFRMFPTQGFTEIVFC--AVNCSVQVLGYGTYMMNHLKEYHKKHEIYH 62
C G + F + T V + GY +M+ + + +
Sbjct: 46 LCFGGFVDGRQVAFARVISDYATFAYLGDVFVLPEHRGRGYSKALMDAVMAHPDLQGLRR 105
Query: 63 FLTFAAKDAIGYFTRQGFT 81
F + DA G + R GFT
Sbjct: 106 FSLATS-DAHGLYARYGFT 123
>2i79_A Acetyltransferase, GNAT family; acetyl coenzyme *A, structur
genomics, PSI-2, protein structure initiative; HET: ACO;
2.10A {Streptococcus pneumoniae}
Length = 172
Score = 29.3 bits (66), Expect = 0.50
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 42 GYGTYMMNHLKEYHKKHEIYH--FLTFAA--KDAIGYFTRQGFTKDIKLPKHLYEGYIKD 97
G G+ ++ E+ + I LT + A+ + + GF + + YI++
Sbjct: 102 GLGSLLLEEAIEWAQASGILRRLQLTVQTRNQAAVHLYQKHGFVIEGSQERGA---YIEE 158
Query: 98 --YEDAMLMH 105
+ D LM
Sbjct: 159 GKFIDVYLMG 168
>1cjw_A Protein (serotonin N-acetyltransferase); HET: COT; 1.80A {Ovis
aries} SCOP: d.108.1.1 PDB: 1b6b_A
Length = 166
Score = 29.0 bits (65), Expect = 0.52
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 22 PTQGFTEIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHFLTFAAKD-AIGYFTRQGF 80
P + AV+ S + G G+ ++ + +D + ++ R GF
Sbjct: 85 PRGHSAHLHALAVHRSFRQQGKGSVLLWRYLHHVGAQPAVRRAVLMCEDALVPFYQRFGF 144
Query: 81 T 81
Sbjct: 145 H 145
>3gy9_A GCN5-related N-acetyltransferase; YP_001815201.1, putative
acetyltransferase; HET: MSE COA SO4; 1.52A
{Exiguobacterium sibiricum 255-15} PDB: 3gya_A*
Length = 150
Score = 28.7 bits (64), Expect = 0.68
Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 2/64 (3%)
Query: 18 FRMFPTQGFTEIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHFLTFAAKDAIGYFTR 77
+ I V + G GT ++ + Y L ++ A ++
Sbjct: 68 MKQSGQARTGRIRHVYVLPEARSHGIGTALLEKIMSEAFLT--YDRLVLYSEQADPFYQG 125
Query: 78 QGFT 81
GF
Sbjct: 126 LGFQ 129
>2gan_A 182AA long hypothetical protein; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 2.10A
{Pyrococcus horikoshii} SCOP: d.108.1.1
Length = 190
Score = 28.9 bits (64), Expect = 0.77
Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 15/91 (16%)
Query: 28 EIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHFL-TFAA-KDAIGYFTRQGFTKDIK 85
I F V+ Q G G+ ++ + + ++ TF + Y+ ++GF +
Sbjct: 108 LIEFFVVDPEFQGKGIGSTLLEFAVKRLRSLGKDPYVVTFPNLEAYSYYYMKKGFRE--- 164
Query: 86 LPKHLYEGYIKDYEDAMLMHCEIDKRIVYTH 116
I Y++ +++ K+ H
Sbjct: 165 ---------IMRYKEFVILKFNH-KKFQLEH 185
>1vkc_A Putative acetyl transferase; structural genomics, pyrococcus
furiosus southeast collaboratory for structural
genomics, secsg; 1.89A {Pyrococcus furiosus} SCOP:
d.108.1.1
Length = 158
Score = 27.8 bits (62), Expect = 1.5
Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 3/86 (3%)
Query: 8 CLGILWISICFRMFPTQGFTEIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHF--LT 65
LG +WI I I V + LG G+ ++ +E+ K+
Sbjct: 73 LLGHVWICITLDTVDYVKIAYIYDIEVVKWARGLGIGSALLRKAEEWAKERGAKKIVLRV 132
Query: 66 FAAKDAIGYFTRQGFTKD-IKLPKHL 90
A+ ++ +G+ + + K +
Sbjct: 133 EIDNPAVKWYEERGYKARALIMEKPI 158
>2cnt_A Modification of 30S ribosomal subunit protein S18; N-alpha
acetylation, GCN5-N-acetyltransferase, ribosomal Pro
acetyltransferase, GNAT; HET: COA; 2.4A {Salmonella
typhimurium} PDB: 2cnm_A* 2cns_A*
Length = 160
Score = 27.3 bits (61), Expect = 2.0
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 19/94 (20%)
Query: 33 AVNCSVQVLGYGTYMMNHLKEYHKKHEIYH-FLTFAA--KDAIGYFTRQGFTKDIKLPKH 89
AV+ Q G G ++ HL + + + +L A AI + GF +
Sbjct: 70 AVDPDFQRRGLGRMLLEHLIDELETRGVVTLWLEVRASNAAAIALYESLGFNEA------ 123
Query: 90 LYEGYIKDY-------EDAMLMHCEIDKRIVYTH 116
++Y EDA++M I ++ + H
Sbjct: 124 ---TIRRNYYPTAQGHEDAIIMALPISMKLHHHH 154
>3frm_A Uncharacterized conserved protein; APC61048, staphylococcus
epidermidis ATCC structural genomics, PSI-2, protein
structure initiative; HET: MES; 2.32A {Staphylococcus
epidermidis}
Length = 254
Score = 27.7 bits (61), Expect = 2.3
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 17 CFRMFPTQGFTEIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHFLTFAAKD-AIGYF 75
+ T EI V Q G G+ + ++ + + L KD A +
Sbjct: 178 IVDIIMTDKTIEIDGFGVLEEFQHQGIGSEIQAYVGRMANERPVI--LVADGKDTAKDMY 235
Query: 76 TRQGFTK 82
RQG+
Sbjct: 236 LRQGYVY 242
>3jvn_A Acetyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; 2.61A {Vibrio fischeri}
Length = 166
Score = 27.0 bits (60), Expect = 2.5
Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 7/89 (7%)
Query: 9 LGILWISICFRMFPTQG---FTEIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHF-L 64
+G + C + I + + G +M +++ K + + +
Sbjct: 68 IGFITGHFCELISTVSKLVMMATIDELYIEKEYRREGVAEQLMMRIEQELKDYGVKEIFV 127
Query: 65 TFAA--KDAIGYFTRQGFTK-DIKLPKHL 90
K A+ ++ +QG + L K L
Sbjct: 128 EVWDFNKGALEFYNKQGLNEHIHYLRKPL 156
>1m4i_A Aminoglycoside 2'-N-acetyltransferase; COA binding motif; HET: COA
KAN PAP; 1.50A {Mycobacterium tuberculosis} SCOP:
d.108.1.1 PDB: 1m4d_A* 1m4g_A* 1m44_A*
Length = 181
Score = 26.9 bits (59), Expect = 3.0
Identities = 3/40 (7%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 42 GYGTYMMNHLKEYHKKHEIYHFLTFAAKDAIGYFTRQGFT 81
+ +++ +++ + L ++ A + +G+
Sbjct: 94 RLVSALLDAVEQVMRGAYQLGAL-SSSARARRLYASRGWL 132
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded
beta-propeller, six- bladed beta-propeller; 1.79A
{Geobacillus stearothermophilus} SCOP: b.68.10.1
Length = 323
Score = 27.1 bits (61), Expect = 3.0
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 125 KHIINYITEQKLERVQGVQPGLKCFSEDCAI--CSCNLTVKRTVKYCRKYQNIR 176
+HI N I + E + P + F + + N VK+T + Y+ R
Sbjct: 80 QHIANIIPIDRDEEIIKAIP-INDFELNGYFLFVTRNGMVKKTE--LKHYKAQR 130
>3bln_A Acetyltransferase GNAT family; NP_981174.1, structural genom joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE MRD GOL; 1.31A {Bacillus
cereus}
Length = 143
Score = 26.5 bits (59), Expect = 3.3
Identities = 10/83 (12%), Positives = 31/83 (37%), Gaps = 16/83 (19%)
Query: 27 TEIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHFLTFAA--KDAIGYFTRQGFTKDI 84
T + V+ + + GY + +++++ + +I F + + F GF +
Sbjct: 65 TFLSLIIVSPTKRRRGYASSLLSYMLSHSPTQKI--FSSTNESNESMQKVFNANGFIRS- 121
Query: 85 KLPKHLYEGYIKDY---EDAMLM 104
G +++ + ++
Sbjct: 122 --------GIVENLDEGDPEIIF 136
>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding,
F(O), F(1), mitochondr inner membrane, transmembrane;
HET: ANP; 3.01A {Saccharomyces cerevisiae}
Length = 311
Score = 27.2 bits (61), Expect = 3.3
Identities = 12/88 (13%), Positives = 21/88 (23%), Gaps = 23/88 (26%)
Query: 50 HLKEYHKKHEIYHFLTFAAKDAIGYFTRQGFTKDIKLPKHLYEGYIKDYEDAMLMHCEID 109
L H + KDA + + + +
Sbjct: 150 QLLRTHPNNIKLSI-NGIGKDAPTFQESALIADKL----------LSVMKAG-----TYP 193
Query: 110 K-RIVYTHFVSVTQSQKHIINYITEQKL 136
K I Y VS S + +E+ +
Sbjct: 194 KISIFYNDPVSS-LSFE-----PSEKPI 215
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR
TLA SRT MES; 1.9A {Bacillus firmus}
Length = 358
Score = 27.1 bits (59), Expect = 3.4
Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 75 FTRQGFTKDIKLPKHLYEGYIKDYEDAMLMHCEIDKRIVYTHFVSVTQSQKHIINYITEQ 134
+T + DI + + DYE ++ + + + VS ++ YI+ +
Sbjct: 292 YTGVAKSNDIAAITRVGD---SDYELRIIKQGTPEHSQLDPYAVSFIGNRGKRFGYISNE 348
Query: 135 KLERVQGVQ 143
+ R+ GV
Sbjct: 349 EFGRIIGVT 357
>1q2y_A Protein YJCF, similar to hypothetical proteins; GCN5-related
N-acetyltransferase superfamily fold, NYSGXRC, PSI,
protein structure initiative; 2.00A {Bacillus subtilis}
SCOP: d.108.1.1
Length = 140
Score = 26.4 bits (59), Expect = 3.5
Identities = 12/65 (18%), Positives = 25/65 (38%)
Query: 17 CFRMFPTQGFTEIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHFLTFAAKDAIGYFT 76
R G+ ++ V S + G G +M L++ F+ A A+ ++
Sbjct: 56 AGRWRMKDGYGKLERICVLKSHRSAGVGGIIMKALEKAAADGGASGFILNAQTQAVPFYK 115
Query: 77 RQGFT 81
+ G+
Sbjct: 116 KHGYR 120
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA
polymerase III; HET: DGT; 2.39A {Geobacillus
kaustophilus} PDB: 3f2c_A* 3f2d_A*
Length = 1041
Score = 27.3 bits (61), Expect = 3.6
Identities = 12/85 (14%), Positives = 28/85 (32%), Gaps = 17/85 (20%)
Query: 81 TKDIKLPKHLYEGYIKDYEDAMLMHCEIDKRIVYTHFVSVTQSQKHIINYITEQKLERVQ 140
++K + L I DY ++ I+ F + +++ + + +V+
Sbjct: 31 VSELKSGRTLLTMKITDYTNS----------ILVKMFSR-DKEDAELMSGVKKGMWVKVR 79
Query: 141 G------VQPGLKCFSEDCAICSCN 159
G L + D + N
Sbjct: 80 GSVQNDTFVRDLVIIANDLNEIAAN 104
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta
pinwheel, DNA wrapping, isomerase, DNA bindng protein;
HET: DNA; 2.60A {Escherichia coli}
Length = 307
Score = 26.7 bits (60), Expect = 4.0
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 125 KHIINYITEQKLERVQGVQPGLKCFSEDCAI--CSCNLTVKRTVKYCRKYQNIR 176
+ I+N + ++ ER+ + P + F E + + N TVK+TV ++ +R
Sbjct: 83 RPIVNLLPLEQDERITAILP-VTEFEEGVKVFMATANGTVKKTV--LTEFNRLR 133
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU
proteins, viral protein,transferase; 2.31A {Paramecium
bursaria chlorella virus NY} PDB: 3oy7_A*
Length = 413
Score = 27.1 bits (59), Expect = 4.0
Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 5/98 (5%)
Query: 42 GYGTYMMNHLKEYHKKHEIYHFLTFAAKDAIGYFTRQGFTKDIKLPKHLYEGYIKDYEDA 101
GYG M + K HE+ F A ++ + + + + L E Y
Sbjct: 15 GYGRVMRAIVPRISKAHEVIVFGIHAFGRSVHANIEEFDAQTAEHVRGLNEQGF--YYSG 72
Query: 102 MLMHCEIDKR---IVYTHFVSVTQSQKHIINYITEQKL 136
+ ++ K ++Y + + + K+
Sbjct: 73 LSEFIDVHKPDIVMIYNDPIVIGNYLLAMGKCSHRTKI 110
>2aj6_A Hypothetical protein MW0638; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE UNL; 1.63A {Staphylococcus aureus subsp}
SCOP: d.108.1.1
Length = 159
Score = 26.3 bits (58), Expect = 4.2
Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 8/86 (9%)
Query: 9 LGILWISICFRMFPTQGFTEIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYH-FLTFA 67
+ +W + I V + LG T + L+++ K T
Sbjct: 77 IAFIWGHFS----NEKSMVNIELLYVEPQFRKLGIATQLKIALEKWAKTMNAKRISNTIH 132
Query: 68 A--KDAIGYFTRQGFTKD-IKLPKHL 90
I G+ +K+ K +
Sbjct: 133 KNNLPMISLNKDLGYQVSHVKMYKDI 158
>2dxq_A AGR_C_4057P, acetyltransferase; structural genomics, PSI-2, protein
struc initiative, midwest center for structural
genomics, MCSG; 1.80A {Agrobacterium tumefaciens str}
Length = 150
Score = 26.2 bits (58), Expect = 4.5
Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 3/67 (4%)
Query: 20 MFPTQGFTEIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHF-LTFAAK--DAIGYFT 76
+ + I + + GYG ++ H E Y L ++
Sbjct: 75 TRAARPYAFIENVVTLEARRGRGYGRTVVRHAIETAFGANCYKVMLLTGRHDPAVHAFYE 134
Query: 77 RQGFTKD 83
GF ++
Sbjct: 135 SCGFVQN 141
>3oee_G ATP synthase subunit gamma; ATP phosphatase, F1F0 ATPase, ATP
synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A
{Saccharomyces cerevisiae} PDB: 2wpd_G* 3fks_G 2hld_G*
3oeh_G* 3ofn_G* 3zry_G* 3oe7_G*
Length = 278
Score = 26.3 bits (59), Expect = 5.5
Identities = 12/88 (13%), Positives = 21/88 (23%), Gaps = 23/88 (26%)
Query: 50 HLKEYHKKHEIYHFLTFAAKDAIGYFTRQGFTKDIKLPKHLYEGYIKDYEDAMLMHCEID 109
L H + KDA + + + +
Sbjct: 117 QLLRTHPNNIKLSI-NGIGKDAPTFQESALIADKL----------LSVMKAG-----TYP 160
Query: 110 K-RIVYTHFVSVTQSQKHIINYITEQKL 136
K I Y VS S + +E+ +
Sbjct: 161 KISIFYNDPVSS-LSFE-----PSEKPI 182
>1y9k_A IAA acetyltransferase; structural genomics, midwest center for
structural genomics bacillus cereus ATCC 14579, PSI;
2.39A {Bacillus cereus atcc 14579} SCOP: d.108.1.1
Length = 157
Score = 26.1 bits (58), Expect = 5.5
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 11/80 (13%)
Query: 28 EIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHFLT----FAAKDAIGYFTRQGFTKD 83
EI+ AV +Q G G ++ H E K + L ++ + + + GF
Sbjct: 63 EIMNIAVAEHLQGKGIGKKLLRHAVETAKGYG-MSKLEVGTGNSSVSQLALYQKCGFRIF 121
Query: 84 IKLPKHLYEGYIKD-YEDAM 102
+ Y YE+ +
Sbjct: 122 -----SIDFDYFSKHYEEEI 136
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller,
beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia
burgdorferi} SCOP: b.68.10.1
Length = 312
Score = 26.3 bits (59), Expect = 5.6
Identities = 6/54 (11%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 125 KHIINYITEQKLERVQGVQPGLKCFSEDCAI--CSCNLTVKRTVKYCRKYQNIR 176
++I I E + ++ K ++D + + + + R ++ ++
Sbjct: 88 QNISELINLGDQEEILTIKN-SKDLTDDAYLLLTTASGKIARFE--STDFKAVK 138
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer,
signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP:
a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A*
1zca_A*
Length = 362
Score = 26.2 bits (57), Expect = 6.1
Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 10/53 (18%)
Query: 91 YEGYIKDYEDA--------MLMHCEIDKRIVYTHFVSV--TQSQKHIINYITE 133
+EG D + +R +Y HF + T++ + + + +
Sbjct: 297 FEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKD 349
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase,
isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Length = 327
Score = 26.3 bits (59), Expect = 6.1
Identities = 10/54 (18%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 125 KHIINYITEQKLERVQGVQPGLKCFSEDCAI--CSCNLTVKRTVKYCRKYQNIR 176
+H+ N + Q ER+ V ++ +++ + + N VK++ + + R
Sbjct: 83 QHVANLLAFQPEERIAQVIQ-IRGYTDAPYLVLATRNGLVKKSK--LTDFDSNR 133
>3pij_A Beta-fructofuranosidase; five-bladed beta-propeller and
beta-sandwich domains, glycos hydrolase family 32,
probiotic bacteria, fructose; HET: FRU; 1.80A
{Bifidobacterium longum} PDB: 3pig_A*
Length = 526
Score = 26.2 bits (58), Expect = 6.9
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 19 RMFPTQGFTEIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYH 62
+ ++G I A + S++V + M + +H +H
Sbjct: 483 YSYASEGPRAIKLVAESGSLKVDSLKLHHMKSIG-LELEHHHHH 525
>4e0a_A BH1408 protein; structural genomics, PSI-biology, protein structure
initiati northeast structural genomics consortium, NESG,
transferase; 1.80A {Bacillus halodurans} PDB: 4f6a_A*
Length = 164
Score = 25.8 bits (57), Expect = 7.5
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 42 GYGTYMMNHLKEYHKKHEIYHF-LTFAA--KDAIGYFTRQGFT-KDIKLPKHLYEGYIKD 97
G G + + Y K H++ L A ++ G + + L E +
Sbjct: 104 GIGRLIFEAIISYGKAHQVDAIELDVYDFNDRAKAFYHSLGMRCQKQTMELPLLEHHHHH 163
Query: 98 Y 98
+
Sbjct: 164 H 164
>1u6m_A Acetyltransferase, GNAT family; structural genomics, PSI, protein
structure initiative; 2.40A {Enterococcus faecalis}
SCOP: d.108.1.1
Length = 199
Score = 25.8 bits (56), Expect = 8.6
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 29 IVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYH-FLTFAA--KDAIGYFTRQGFTK--D 83
+ +V+ + +G G+ +++ L E K L A + +GF
Sbjct: 115 LDTISVDERFRGMGIGSKLLDALPEVAKASGKQALGLNVDFDNPGARKLYASKGFKDVTT 174
Query: 84 IKLPKHLYEGYIKD 97
+ + HLY K+
Sbjct: 175 MTISGHLYNHMQKE 188
>3qb8_A A654L protein; GNAT N-acetyltransferase, acetyltransferase, COA,
spermine, spermidine, transferase; HET: COA; 1.50A
{Paramecium bursaria chlorella virus 1}
Length = 197
Score = 25.7 bits (56), Expect = 9.7
Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 8/71 (11%)
Query: 31 FCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHFLTFA-AKDAIGYFTRQGFTKDIKLPKH 89
A+ V G T ++ E H + + F + GF +
Sbjct: 112 VFAIGSEVTGKGLATKLLKKTIEESSSHGFKYIYGDCTNIISQNMFEKHGF-------ET 164
Query: 90 LYEGYIKDYED 100
+ K Y+
Sbjct: 165 VGSVKYKGYQY 175
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase
activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1
c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Length = 888
Score = 26.0 bits (58), Expect = 9.9
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 37 SVQVLGYGT---YMMNHLKEYHKKHEIYHFLTFAAK 69
S+QV N E+ + E + FL + ++
Sbjct: 126 SIQVDFNRRADSLQKNQDLEFERNRERFEFLKWGSQ 161
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.142 0.462
Gapped
Lambda K H
0.267 0.0706 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,869,357
Number of extensions: 161537
Number of successful extensions: 482
Number of sequences better than 10.0: 1
Number of HSP's gapped: 473
Number of HSP's successfully gapped: 79
Length of query: 181
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 93
Effective length of database: 4,244,745
Effective search space: 394761285
Effective search space used: 394761285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (24.6 bits)