RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7904
(181 letters)
>d1ygha_ d.108.1.1 (A:) Catalytic domain of GCN5 histone
acetyltransferase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 164
Score = 92.1 bits (228), Expect = 1e-24
Identities = 52/101 (51%), Positives = 67/101 (66%), Gaps = 1/101 (0%)
Query: 16 ICFRMFPTQGFTEIVFCAVNCSVQVLGYGTYMMNHLKEY-HKKHEIYHFLTFAAKDAIGY 74
I +R F + F EIVFCA++ + QV GYG ++MNHLK+Y I +FLT+A AIGY
Sbjct: 63 ITYRPFDKREFAEIVFCAISSTEQVRGYGAHLMNHLKDYVRNTSNIKYFLTYADNYAIGY 122
Query: 75 FTRQGFTKDIKLPKHLYEGYIKDYEDAMLMHCEIDKRIVYT 115
F +QGFTK+I L K ++ GYIKDYE LM C + RI Y
Sbjct: 123 FKKQGFTKEITLDKSIWMGYIKDYEGGTLMQCSMLPRIRYL 163
>d1qsra_ d.108.1.1 (A:) Catalytic domain of GCN5 histone
acetyltransferase {Tetrahymena thermophila [TaxId:
5911]}
Length = 162
Score = 92.1 bits (228), Expect = 1e-24
Identities = 46/100 (46%), Positives = 64/100 (64%)
Query: 16 ICFRMFPTQGFTEIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHFLTFAAKDAIGYF 75
ICFR + Q F E+ F AV + QV GYGT +MN K++ +K I + LT+A AIGYF
Sbjct: 62 ICFRQYKPQRFAEVAFLAVTANEQVRGYGTRLMNKFKDHMQKQNIEYLLTYADNFAIGYF 121
Query: 76 TRQGFTKDIKLPKHLYEGYIKDYEDAMLMHCEIDKRIVYT 115
+QGFTK+ ++P+ ++GYIKDY+ LM C I + Y
Sbjct: 122 KKQGFTKEHRMPQEKWKGYIKDYDGGTLMECYIHPYVDYG 161
>d1z4ra1 d.108.1.1 (A:497-658) Catalytic domain of GCN5 histone
acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 86.3 bits (213), Expect = 2e-22
Identities = 68/96 (70%), Positives = 79/96 (82%)
Query: 16 ICFRMFPTQGFTEIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHFLTFAAKDAIGYF 75
ICFRMFPTQGFTEIVFCAV + QV GYGT++MNHLKEYH KH I +FLT+A + AIGYF
Sbjct: 67 ICFRMFPTQGFTEIVFCAVTSNEQVKGYGTHLMNHLKEYHIKHNILYFLTYADEYAIGYF 126
Query: 76 TRQGFTKDIKLPKHLYEGYIKDYEDAMLMHCEIDKR 111
+QGF+KDIK+PK Y GYIKDYE A LM CE++ R
Sbjct: 127 KKQGFSKDIKVPKSRYLGYIKDYEGATLMECELNPR 162
>d1n8ia_ c.1.13.1 (A:) Malate synthase G {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 726
Score = 33.4 bits (76), Expect = 0.012
Identities = 25/143 (17%), Positives = 43/143 (30%), Gaps = 4/143 (2%)
Query: 39 QVLGYGTYMMNHLKEYHKKHEIYHFLTFAAKDAIGYFTRQGFTKDIKLPKHLYEGYIKDY 98
Q GY + H ++ + + +G R G KD+ L + I D+
Sbjct: 215 QFAGYTGAAESPTSVLLINHGLHIEILIDPESQVGTTDRAG-VKDVILESAI--TTIMDF 271
Query: 99 EDAMLMHCEIDKRIVYTHFVSVTQSQKHIINYITEQKLERVQGVQPGLKCFSEDCAICSC 158
ED++ DK + Y +++ + + RV
Sbjct: 272 EDSVAAVDAADKVLGYRNWLGLNKGDLAAAVDKDGTAFLRVLNRDRNYTAPGGGQFTLPG 331
Query: 159 N-LTVKRTVKYCRKYQNIRDPDD 180
L R V + I D D
Sbjct: 332 RSLMFVRNVGHLMTNDAIVDTDG 354
>d1cjwa_ d.108.1.1 (A:) Serotonin N-acetyltranferase {Sheep (Ovis
aries) [TaxId: 9940]}
Length = 166
Score = 29.9 bits (66), Expect = 0.098
Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 28 EIVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHFLTFAAKD-AIGYFTRQGFTK 82
+ AV+ S + G G+ ++ + +D + ++ R GF
Sbjct: 91 HLHALAVHRSFRQQGKGSVLLWRYLHHVGAQPAVRRAVLMCEDALVPFYQRFGFHP 146
>d1i12a_ d.108.1.1 (A:) Glucosamine-phosphate N-acetyltransferase
GNA1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 157
Score = 29.6 bits (65), Expect = 0.13
Identities = 11/55 (20%), Positives = 22/55 (40%)
Query: 29 IVFCAVNCSVQVLGYGTYMMNHLKEYHKKHEIYHFLTFAAKDAIGYFTRQGFTKD 83
I AVN Q G G +++ L + Y + + + ++ + GF+
Sbjct: 95 IEDIAVNSKYQGQGLGKLLIDQLVTIGFDYGCYKIILDCDEKNVKFYEKCGFSNA 149
>d1d8ca_ c.1.13.1 (A:) Malate synthase G {Escherichia coli [TaxId:
562]}
Length = 720
Score = 29.9 bits (67), Expect = 0.18
Identities = 22/140 (15%), Positives = 47/140 (33%), Gaps = 14/140 (10%)
Query: 39 QVLGYGTYMMNHLKEYHKKHEIYHFLTFAAKDAIGYFTRQGFTKDIKLPKHLYEGYIKDY 98
Q +GY K + ++ L A IG D+ + + I D
Sbjct: 213 QFVGYRGDAAAPTCILLKNNGLHIELQIDANGRIGKDDPAHI-NDVIVEAAIS--TILDC 269
Query: 99 EDAMLMHCEIDKRIVYTHFVSVTQSQKHIINYITEQKLERVQGVQPGLKCFSEDCAICSC 158
ED++ DK ++Y + + + Q + + + + V+ + + D
Sbjct: 270 EDSVAAVDAEDKILLYRNLLGLM--QGTLQEKMEKNGRQIVRKLNDDRHYTAAD----GS 323
Query: 159 NLTVKRTVKYCRKYQNIRDP 178
+++ R IR+
Sbjct: 324 EISLH-----GRSLLFIRNV 338
>d1xrha_ c.122.1.1 (A:) Ureidoglycolate dehydrogenase AllD
{Escherichia coli [TaxId: 562]}
Length = 343
Score = 29.7 bits (66), Expect = 0.18
Identities = 15/90 (16%), Positives = 21/90 (23%), Gaps = 2/90 (2%)
Query: 7 WCLGILWISICFRMFPTQGFTEIVFCAV--NCSVQVLGYGTYMMNHLKEYHKKHEIYHFL 64
C + G + F A + T + K +
Sbjct: 138 MCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIP 197
Query: 65 TFAAKDAIGYFTRQGFTKDIKLPKHLYEGY 94
A D G T F LP +GY
Sbjct: 198 DTWAVDKNGVPTTDPFAVHALLPAAGPKGY 227
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 93
Score = 26.2 bits (58), Expect = 1.0
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 111 RIVYTHF---VSVTQSQKHIINYITEQKLERVQGVQPGLKC 148
+ Y+HF V+V + I N++ E+ R +
Sbjct: 6 EVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTT-IHGDTDV 45
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 26.6 bits (57), Expect = 1.7
Identities = 9/91 (9%), Positives = 22/91 (24%), Gaps = 5/91 (5%)
Query: 46 YMMNHLKEYHKKHEIYHFLTFAAKDAIGYFTRQGFTKDIKLPKHLYEGYIKDYEDAMLMH 105
+ E F+ + + K + G +YE
Sbjct: 107 NNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPE 166
Query: 106 CEIDKRIVYTHFVSVTQSQKHIINYITEQKL 136
+ T V + ++ + E+ +
Sbjct: 167 LVLK-----TDSCDVNDCVQQVVELLQERDI 192
>d1mk4a_ d.108.1.1 (A:) Hypothetical protein YqiY {Bacillus subtilis
[TaxId: 1423]}
Length = 157
Score = 26.2 bits (56), Expect = 1.7
Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 7/102 (6%)
Query: 10 GILWISICFRMFPTQGFTEIVFCAVNCSVQVLGYGTYMMNHLKEYHK---KHEIYHFLTF 66
+ I F+ I F V+ + + G + + E K + +
Sbjct: 52 SMTGFLIGFQSQSDPETAYIHFSGVHPDFRKMQIGKQLYDVFIETVKQRGCTRVKCVTSP 111
Query: 67 AAKDAIGYFTRQGFTKDIKLPKHLYEGYIKDY----EDAMLM 104
K +I Y T+ GF + +Y +D +L
Sbjct: 112 VNKVSIAYHTKLGFDIEKGTKTVNGISVFANYDGPGQDRVLF 153
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 322
Score = 24.8 bits (54), Expect = 7.7
Identities = 8/90 (8%), Positives = 29/90 (32%), Gaps = 8/90 (8%)
Query: 91 YEGYIKDYEDAMLMHCEIDKRIVYTHFVSVTQSQKHIINYITEQKLERVQGVQPGLKCFS 150
E + +++ + I H + ++ ++N ++ E + + L
Sbjct: 127 VEMSVIKHDEDFYLVIHI------IHQIQSMKTLWELVNKDPKELEEFLMTHKENLMLKD 180
Query: 151 EDCAICSCNLTVKRTVKYCRKYQNIRDPDD 180
+ + +Y +K + + +
Sbjct: 181 IASPLKTVYKPC--FEEYTKKPKLDHNQEI 208
>d1kxla_ b.40.4.3 (A:) CDC13 ssDNA-binding domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 187
Score = 24.4 bits (53), Expect = 7.7
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 80 FTKDIKLPKHLYEGYIKDYEDAMLMHCEIDKRIVYTHFVSVTQSQKHIINY 130
FTK+ + +LY+ Y+ DYE+ + ++ + F + + I N
Sbjct: 48 FTKNDIVQNYLYDRYLIDYENKLELNEGFKAIMYKNQFETFDSKLRKIFNN 98
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.142 0.462
Gapped
Lambda K H
0.267 0.0407 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 735,864
Number of extensions: 33628
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 17
Length of query: 181
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 101
Effective length of database: 1,309,196
Effective search space: 132228796
Effective search space used: 132228796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.9 bits)