BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7914
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 208 bits (530), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 95/170 (55%), Positives = 119/170 (70%), Gaps = 1/170 (0%)
Query: 185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAH 244
++ +Y LSM PYPSG LHMGHVR YTI D +ARY M GKNV QP+GWDAFGLPAE AA
Sbjct: 52 KEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAV 111
Query: 245 QHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 304
++ P WT NIA MK+QL+ G ++W ELATC P+YY+W Q F +LY GLVY+
Sbjct: 112 KNNTAPAPWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYK 171
Query: 305 KEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLAN 354
K + VNW P D TVLA+EQV + G WR +VE++ + QWFI+ T A+
Sbjct: 172 KTSAVNWCPNDQTVLANEQVID-GCCWRCDTKVERKEIPQWFIKITAYAD 220
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 88/167 (52%), Positives = 111/167 (66%), Gaps = 2/167 (1%)
Query: 189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGI 248
YVL MFPYPSG LHMGH++ YT+ D LAR+ M G V PMGWDAFGLPAENAA + G+
Sbjct: 36 YVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGV 95
Query: 249 DPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEAT 308
P++WT NI K L+ G ++W+ E+ TC+P+YY+W Q +FL ++ GL YR +
Sbjct: 96 HPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGL 155
Query: 309 VNWDPIDNTVLADEQVDEQGISWR-SGARVEKRRLSQWFIRTTRLAN 354
VNW P TVLA+EQV E G WR VEKR L QW++R T A
Sbjct: 156 VNWCPKCQTVLANEQVVE-GRCWRHEDTPVEKRELEQWYLRITAYAE 201
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 88/167 (52%), Positives = 111/167 (66%), Gaps = 2/167 (1%)
Query: 189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGI 248
YVL MFPYPSG LHMGH++ YT+ D LAR+ M G V PMGWDAFGLPAENAA + G+
Sbjct: 36 YVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGV 95
Query: 249 DPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEAT 308
P++WT NI K L+ G ++W+ E+ TC+P+YY+W Q +FL ++ GL YR +
Sbjct: 96 HPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGL 155
Query: 309 VNWDPIDNTVLADEQVDEQGISWR-SGARVEKRRLSQWFIRTTRLAN 354
VNW P TVLA+EQV E G WR VEKR L QW++R T A
Sbjct: 156 VNWCPKCQTVLANEQVVE-GRCWRHEDTPVEKRELEQWYLRITAYAE 201
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
pdb|3ZIU|B Chain B, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
Length = 637
Score = 157 bits (397), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 114/195 (58%), Gaps = 12/195 (6%)
Query: 183 RREDNFYVLSMFPYPSGS-LHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAEN 241
+ +D FY L MFPYPSGS LH+GH YT +D ++RY + G +V P+GWDAFGLPAE
Sbjct: 33 KSKDKFYALDMFPYPSGSGLHVGHPEGYTATDIISRYKRLKGFDVLHPIGWDAFGLPAEQ 92
Query: 242 AAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGL 301
A G P+ +T+ NI + QL+ G F++E E+ T DP YY+WTQ +F +Y GL
Sbjct: 93 YALSSGKHPQPFTLKNIENFRRQLKSLGFSFDYEKEVNTTDPSYYRWTQWIFKQIYKKGL 152
Query: 302 VYRKEATVNWDPIDNTVLADEQVDE----QGISWRSGARVEKRRLSQWFIRTTRLA---- 353
+E VNW P TVLA+E++ E + +S R V K+ + QW ++ T A
Sbjct: 153 AEIREVDVNWCPGLGTVLANEEIVENDKGEMVSERGSFPVYKKPMKQWVLKITNYADRLL 212
Query: 354 ---NLVSLVDSVSAL 365
NL+ DS+ L
Sbjct: 213 EDLNLLDWPDSLKKL 227
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 74/174 (42%), Gaps = 26/174 (14%)
Query: 179 LEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLP 238
+ K +E FY+ FPY SG LH+GH R YTI D +AR+ M G NV PM W G P
Sbjct: 27 IRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSP 86
Query: 239 AENAAHQ-HGIDPRE---------------WTVG---NIAT--MKSQLQGF---GCKFNW 274
A + DP+ WT NI MK+ + F G +W
Sbjct: 87 IVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDW 146
Query: 275 ESELATCD--PKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDE 326
E T P + K+ + F L G + + V WDP+ T L D + E
Sbjct: 147 SREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLME 200
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 74/174 (42%), Gaps = 26/174 (14%)
Query: 179 LEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLP 238
+ K +E FY+ FPY SG LH+GH R YTI D +AR+ M G NV PM W G P
Sbjct: 27 IRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSP 86
Query: 239 AENAAHQ-HGIDPRE---------------WTVG---NIAT--MKSQLQGF---GCKFNW 274
A + DP+ WT NI MK+ + F G +W
Sbjct: 87 IVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDW 146
Query: 275 ESELATCD--PKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDE 326
E T P + K+ + F L G + + V WDP+ T L D + E
Sbjct: 147 SREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLME 200
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 12/159 (7%)
Query: 179 LEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLP 238
LE + + F + PY +G+LHMGH + D + RY M G GWD GLP
Sbjct: 41 LEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLP 100
Query: 239 AENAAHQHGIDP------------REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYY 286
E A + G+D +E+ + I K + G + ++ T P+Y
Sbjct: 101 IEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYE 160
Query: 287 KWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD 325
+F ++ GL+Y+ + V W P + LA+ +++
Sbjct: 161 AAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIE 199
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 63/156 (40%), Gaps = 16/156 (10%)
Query: 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAE------- 240
F + P +GSLHMGH ++ D L RY M G G D G+ +
Sbjct: 36 FVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLL 95
Query: 241 ----NAAHQHGIDPR-----EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQA 291
H G + +W + T+ QL+ G +W E T D K + +
Sbjct: 96 LKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRY 155
Query: 292 LFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQ 327
F YH GL YR VNW P T L+D +V+ +
Sbjct: 156 AFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETE 191
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CSX|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CT8|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
pdb|2CT8|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
Length = 497
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH 246
FYV + Y + H+GH +DT+ARYY + +VF G D GL + A +
Sbjct: 6 KFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEEL 65
Query: 247 GIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE 306
GI P+E N K +L F K + + T DP + K+ Q +F + Y G +Y E
Sbjct: 66 GISPKELVDRNAERFK-KLWEF-LKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGE 123
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 8/134 (5%)
Query: 177 GTLE------GKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPM 230
GTLE G + +Y+ + YP+G H+GH +D +AR+ +NG +V+
Sbjct: 10 GTLEAQTQGPGSMSREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLT 69
Query: 231 GWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQ 290
G D G+ +A + GI PR+ N + + + + + + T + ++YK +Q
Sbjct: 70 GTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAEVLNS--SNDDYIRTSEERHYKASQ 127
Query: 291 ALFLDLYHAGLVYR 304
A++ + G +Y+
Sbjct: 128 AIWQAMVANGDIYK 141
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With
Methionyladenylate And Pyrophosphate
Length = 564
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 177 GTLEGK-------RREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQP 229
GTLE + +++ F+ + Y + S H+GHV I D L RY+ + G+ VF
Sbjct: 10 GTLEAQTQGPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVM 69
Query: 230 MGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWT 289
G D G AA + G+ P ++T + K Q N+ + T +P + K
Sbjct: 70 TGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQEMNYDMNY--FIRTTNPTHEKLV 127
Query: 290 QALFLDLYHAGLVY 303
Q ++ L G +Y
Sbjct: 128 QDIWKKLAAKGDIY 141
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi
Length = 722
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 59/140 (42%), Gaps = 7/140 (5%)
Query: 188 FYVLSMFPYPSGSLHMGHVR-VYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH 246
+ V S PY +G +H GH+ Y +D RY + G++V G D G P A +
Sbjct: 4 YMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE 63
Query: 247 GIDPREWTVGNIATMKSQLQGFGCKFNW--ESELATCDPKYYKWTQALFLDLYHAGLVYR 304
G PRE +K Q F++ +EL P +YK +Q FL Y G + +
Sbjct: 64 GRSPREIVDEFHEQIKITFQRAKISFDFFGRTEL----PIHYKLSQEFFLKAYENGHLVK 119
Query: 305 KEATVNWDPIDNTVLADEQV 324
K + D L D V
Sbjct: 120 KVTKQAYCEHDKMFLPDRFV 139
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|C Chain C, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1M|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
Length = 524
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 12/177 (6%)
Query: 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHG 247
FY+ + YP+G H+GH Y +D +AR+ ++G +V G D G A + G
Sbjct: 14 FYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEG 73
Query: 248 IDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEA 307
I E N + + F+ + T D +Y+ ++A++ + AG +Y +A
Sbjct: 74 IPAAELARRNSDVFQRLQEKLNISFD--RFIRTSDADHYEASKAIWKRMADAGDIY-LDA 130
Query: 308 TVNWDPIDNTVL-----ADEQVDEQGISWRSGARVEKRRLSQWFIR----TTRLANL 355
W I + EQ D I+ +GA V +F R T RL L
Sbjct: 131 YKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLLAL 187
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a
Mutant From Thermus Thermophilus
Length = 502
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 3/167 (1%)
Query: 185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAH 244
E FYV + Y + H+GH ++D LAR++ ++G F G D G AA
Sbjct: 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQ 61
Query: 245 QHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 304
G DP+ + K G ++ + T + ++ K Q + +Y AG +Y
Sbjct: 62 AAGEDPKAFVDRVSGRFKRAWDLLGIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIYY 119
Query: 305 KEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTR 351
E + ++++ E G+ G VE+R+ +F R +
Sbjct: 120 GEYEGLYCVSCERFYTEKELVE-GLCPIHGRPVERRKEGNYFFRMEK 165
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 3/167 (1%)
Query: 185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAH 244
E FYV + Y + H+GH ++D LAR++ ++G F G D G AA
Sbjct: 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQ 61
Query: 245 QHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 304
G DP+ + K G ++ + T + ++ K Q + +Y AG +Y
Sbjct: 62 AAGEDPKAFVDRVSGRFKRAWDLLGIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIYY 119
Query: 305 KEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTR 351
E + ++++ E G+ G VE+R+ +F R +
Sbjct: 120 GEYEGLYCVSCERFYTEKELVE-GLCPIHGRPVERRKEGNYFFRMEK 165
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f
Mutant From Thermus Thermophilus
pdb|2D5B|A Chain A, Crystal Structure Of Thermus Thermophilus Methionyl Trna
Synthetase Y225f Mutant Obtained In The Presence Of
Peg6000
Length = 500
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 3/167 (1%)
Query: 185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAH 244
E FYV + Y + H+GH ++D LAR++ ++G F G D G AA
Sbjct: 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQ 61
Query: 245 QHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 304
G DP+ + K G ++ + T + ++ K Q + +Y AG +Y
Sbjct: 62 AAGEDPKAFVDRVSGRFKRAWDLLGIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIYY 119
Query: 305 KEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTR 351
E + ++++ E G+ G VE+R+ +F R +
Sbjct: 120 GEYEGLYCVSCERFYTEKELVE-GLCPIHGRPVERRKEGNYFFRMEK 165
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%)
Query: 185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAH 244
E F+V S Y + + H+GHV I+D + RY+ + G+ VF G D G AA
Sbjct: 8 EKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAK 67
Query: 245 QHGIDPREWTVGNIATMKSQLQ 266
Q + P ++T K +
Sbjct: 68 QKQVSPYDFTTAVAGEFKKXFE 89
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%)
Query: 185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAH 244
E F+V S Y + + H+GHV I+D + RY+ + G+ VF G D G AA
Sbjct: 8 EKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAK 67
Query: 245 QHGIDPREWTVGNIATMKSQLQ 266
Q + P ++T K +
Sbjct: 68 QKQVSPYDFTTAVAGEFKKCFE 89
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphonate
pdb|1PFU|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphinate
pdb|1PFV|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Difluoromethionine
pdb|1PFW|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Trifluoromethionine
pdb|1PFY|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionyl Sulphamoyl Adenosine
pdb|1PG0|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methioninyl Adenylate
pdb|1PG2|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine And Adenosine
Length = 551
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 2/135 (1%)
Query: 190 VLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGID 249
V PY +GS+H+GH+ + +D RY M G V DA G P A Q GI
Sbjct: 9 VTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGIT 68
Query: 250 PREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATV 309
P E +G + + + Q G ++++ +T + + ++ ++ L G + + +
Sbjct: 69 P-EQMIGEM-SQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQ 126
Query: 310 NWDPIDNTVLADEQV 324
+DP L D V
Sbjct: 127 LYDPEKGMFLPDRFV 141
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 2/135 (1%)
Query: 190 VLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGID 249
V PY +GS+H+GH+ + +D RY M G V DA G P A Q GI
Sbjct: 10 VTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGIT 69
Query: 250 PREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATV 309
P E +G + + + Q G ++++ +T + + ++ ++ L G + + +
Sbjct: 70 P-EQMIGEM-SQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQ 127
Query: 310 NWDPIDNTVLADEQV 324
+DP L D V
Sbjct: 128 LYDPEKGMFLPDRFV 142
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 2/135 (1%)
Query: 190 VLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGID 249
V PY +GS+H+GH+ + +D RY M G V DA G P A Q GI
Sbjct: 9 VTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGIT 68
Query: 250 PREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATV 309
P E +G + + + Q G ++++ +T + + ++ ++ L G + + +
Sbjct: 69 P-EQMIGEM-SQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQ 126
Query: 310 NWDPIDNTVLADEQV 324
+DP L D V
Sbjct: 127 LYDPEKGMFLPDRFV 141
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%)
Query: 185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAH 244
E F+V S Y + + H+GHV I+D + RY+ + G+ VF G D G AA
Sbjct: 8 EKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAK 67
Query: 245 QHGIDPREWTVGNIATMKSQLQ 266
Q + P ++T K +
Sbjct: 68 QKQVSPYDFTTAVAGEFKKCFE 89
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2
Length = 547
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 2/135 (1%)
Query: 190 VLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGID 249
V PY +GS+H+GH+ + +D RY M G V DA G P A Q GI
Sbjct: 9 VTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGIT 68
Query: 250 PREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATV 309
P E +G + + + Q G ++++ +T + + ++ ++ L G + + +
Sbjct: 69 P-EQMIGEM-SQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQ 126
Query: 310 NWDPIDNTVLADEQV 324
+DP L D V
Sbjct: 127 LYDPEKGMFLPDRFV 141
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 2/130 (1%)
Query: 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWT 254
PY +GS+H+GH+ + +D RY M G V DA G P A Q GI P E
Sbjct: 27 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITP-EQM 85
Query: 255 VGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPI 314
+G + + + Q G ++++ +T + + ++ ++ L G + + + +DP
Sbjct: 86 IGEM-SQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPE 144
Query: 315 DNTVLADEQV 324
L D V
Sbjct: 145 KGMFLPDRFV 154
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
pdb|1JZS|A Chain A, Isoleucyl-trna Synthetase Complexed With Mupirocin
pdb|1ILE|A Chain A, Isoleucyl-Trna Synthetase
Length = 821
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 67/164 (40%), Gaps = 17/164 (10%)
Query: 178 TLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGL 237
++E ++ + V P +G H+GH + + D RY M G + GWD GL
Sbjct: 30 SVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGL 89
Query: 238 PAENAAHQ------------HGIDP-REWTVGNIATMKSQLQGFGCKFNW----ESELAT 280
P E + +GI+ + ++ T + + + F + + E AT
Sbjct: 90 PVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYAT 149
Query: 281 CDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQV 324
+P Y + +L+ GL+YR V + P T L+ +V
Sbjct: 150 LEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEV 193
>pdb|3FNR|A Chain A, Crystal Structure Of Putative Arginyl T-Rna Synthetase
From Campylobacter Jejuni
Length = 464
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 22/134 (16%)
Query: 162 RSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLAR---- 217
+++++P+DF +G++++++F + + P+G LH+GH R DTL R
Sbjct: 14 QALTNPNDFT--------KGEKKQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARH 65
Query: 218 --------YYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGN--IATMKSQLQG 267
YY + N +G E+ H++ P ++ G + K +
Sbjct: 66 LGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPEQYYKGEYIVDLAKEAFEK 125
Query: 268 FGCKFNWESELATC 281
FG +F E + +
Sbjct: 126 FGKEFFSEENIPSL 139
>pdb|3AII|A Chain A, Archaeal Non-Discriminating Glutamyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus
Length = 553
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 190 VLSMFPYPSGSLHMGHVRVYTISDTLARYY 219
VL P PSG LH+GH R ++ AR Y
Sbjct: 98 VLRFAPNPSGPLHIGHARAAILNHEYARKY 127
>pdb|1IQ0|A Chain A, Thermus Thermophilus Arginyl-Trna Synthetase
Length = 592
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 197 PSGSLHMGHVRVYTISDTLARYYAMNGKNVF 227
P+ LH+GH+R + D +AR A G+ V
Sbjct: 114 PNKELHVGHLRNIALGDAIARILAYAGREVL 144
>pdb|1NJ1|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Cysteine
Sulfamoyl Adenylate
pdb|1NJ2|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus
pdb|1NJ5|A Chain A, Crystal Structure Of Prolyl-trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Proline
Sulfamoyl Adenylate
pdb|1NJ6|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Alanine
Sulfamoyl Adenylate
Length = 501
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 14/102 (13%)
Query: 194 FPYPSGSLHMGHVRVYTISD-TLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDP-- 250
F P G H Y +SD +A A++G LP + AAHQ I P
Sbjct: 271 FETPEGDHEYVHQTCYGLSDRVIASVIAIHGDE-------SGLCLPPDVAAHQVVIVPII 323
Query: 251 ----REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKW 288
E + ++S+L+ G + + + KYY+W
Sbjct: 324 FKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKYYEW 365
>pdb|4I6K|A Chain A, Crystal Structure Of Probable 2-Pyrone-4,6-Dicarboxylic
Acid Hydrolase Abaye1769 (Target Efi-505029) From
Acinetobacter Baumannii With Citric Acid Bound
Length = 294
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 20 GAMDLYEGLSDPILQDWKDIVNLQKHWI 47
G +D +G+ DP Q + ++N+++HWI
Sbjct: 182 GRVDPVKGIEDPDYQKFLSLLNVKQHWI 209
>pdb|4DOH|B Chain B, Il20IL201IL20R2 TERNARY COMPLEX
pdb|4DOH|D Chain D, Il20IL201IL20R2 TERNARY COMPLEX
Length = 206
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 56 EFQILPQPEGTSNSAPTADTLSIW----LPEDTIEDVAKSQGQYITVKSSHILASKTKEK 111
E ILP P+ S + L +W P +T+ + QG+Y ++ +SHI +
Sbjct: 3 EVAILPAPQQLSVLSTNMKHLLMWSPVIAPGETVYYSVEYQGEYESLYTSHIWIPSSWCS 62
Query: 112 LTENVKHQIENKYKSIVSSDPMLR 135
LTE + + + + V + +R
Sbjct: 63 LTEGPECDVTDDITATVPYNLRVR 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,449,334
Number of Sequences: 62578
Number of extensions: 498798
Number of successful extensions: 1144
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1107
Number of HSP's gapped (non-prelim): 41
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)