Query psy7914
Match_columns 365
No_of_seqs 385 out of 2494
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 22:07:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7914.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7914hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0143 MetG Methionyl-tRNA sy 100.0 1.5E-41 3.3E-46 349.5 17.9 177 185-363 4-208 (558)
2 TIGR00396 leuS_bact leucyl-tRN 100.0 2.9E-40 6.3E-45 357.6 21.0 176 184-359 27-202 (842)
3 PLN02610 probable methionyl-tR 100.0 3E-40 6.6E-45 354.5 20.3 180 180-361 11-221 (801)
4 cd00817 ValRS_core catalytic c 100.0 3.8E-40 8.3E-45 329.1 18.2 171 187-362 2-188 (382)
5 PLN02563 aminoacyl-tRNA ligase 100.0 6.3E-40 1.4E-44 356.9 21.1 176 184-360 108-284 (963)
6 PLN02224 methionine-tRNA ligas 100.0 6E-40 1.3E-44 343.3 19.0 175 185-361 68-242 (616)
7 PF09334 tRNA-synt_1g: tRNA sy 100.0 6E-40 1.3E-44 328.3 16.5 173 188-362 1-201 (391)
8 PRK00390 leuS leucyl-tRNA synt 100.0 3.5E-39 7.7E-44 348.1 20.8 173 187-360 33-205 (805)
9 PRK12267 methionyl-tRNA synthe 100.0 5.5E-39 1.2E-43 340.3 19.3 175 186-362 4-178 (648)
10 COG0495 LeuS Leucyl-tRNA synth 100.0 1.5E-38 3.2E-43 337.3 18.9 172 186-358 34-205 (814)
11 PRK00133 metG methionyl-tRNA s 100.0 7.4E-38 1.6E-42 332.7 19.4 173 186-360 2-202 (673)
12 PRK12268 methionyl-tRNA synthe 100.0 2.2E-37 4.8E-42 322.8 18.4 175 185-361 2-205 (556)
13 PRK11893 methionyl-tRNA synthe 100.0 4.9E-37 1.1E-41 316.8 19.1 173 187-362 2-176 (511)
14 PRK13208 valS valyl-tRNA synth 100.0 6.7E-37 1.5E-41 331.1 19.5 140 185-324 37-189 (800)
15 TIGR00398 metG methionyl-tRNA 100.0 1.5E-36 3.2E-41 314.9 18.9 172 188-361 1-200 (530)
16 cd00814 MetRS_core catalytic c 100.0 1.3E-35 2.7E-40 289.9 18.1 157 187-362 1-157 (319)
17 KOG0435|consensus 100.0 5.9E-37 1.3E-41 311.3 8.4 175 184-359 56-230 (876)
18 TIGR00422 valS valyl-tRNA synt 100.0 1.5E-35 3.2E-40 322.9 19.7 163 152-324 9-187 (861)
19 PRK05729 valS valyl-tRNA synth 100.0 7E-35 1.5E-39 317.8 18.9 140 186-325 36-191 (874)
20 COG0525 ValS Valyl-tRNA synthe 100.0 3.7E-33 8.1E-38 295.8 18.8 165 151-325 8-188 (877)
21 PRK14900 valS valyl-tRNA synth 100.0 5.3E-33 1.1E-37 306.7 19.3 142 184-325 46-204 (1052)
22 KOG0436|consensus 100.0 4.6E-33 9.9E-38 271.0 15.9 173 187-361 40-218 (578)
23 PLN02943 aminoacyl-tRNA ligase 100.0 7.6E-33 1.6E-37 303.3 19.5 141 185-325 87-243 (958)
24 cd00818 IleRS_core catalytic c 100.0 7.2E-33 1.6E-37 272.6 16.6 151 187-361 2-169 (338)
25 cd00812 LeuRS_core catalytic c 100.0 9.9E-33 2.1E-37 269.1 15.4 149 187-362 1-151 (314)
26 PRK06039 ileS isoleucyl-tRNA s 100.0 9.1E-32 2E-36 295.9 17.9 142 184-325 39-197 (975)
27 TIGR00392 ileS isoleucyl-tRNA 100.0 1.4E-31 3E-36 291.9 17.1 149 184-333 34-199 (861)
28 PRK05743 ileS isoleucyl-tRNA s 100.0 1.2E-31 2.7E-36 293.0 16.6 145 184-328 47-204 (912)
29 PRK13804 ileS isoleucyl-tRNA s 100.0 3E-31 6.4E-36 290.9 17.5 145 184-328 52-212 (961)
30 PLN02381 valyl-tRNA synthetase 100.0 2.8E-31 6E-36 293.0 17.0 167 151-327 103-286 (1066)
31 PF00133 tRNA-synt_1: tRNA syn 100.0 5E-31 1.1E-35 277.3 15.6 145 184-328 21-182 (601)
32 cd00668 Ile_Leu_Val_MetRS_core 100.0 1.5E-30 3.2E-35 253.3 16.2 145 187-361 1-158 (312)
33 PTZ00419 valyl-tRNA synthetase 100.0 1.4E-30 3E-35 287.3 17.1 144 184-327 58-218 (995)
34 PLN02843 isoleucyl-tRNA synthe 100.0 3E-30 6.5E-35 283.1 16.9 142 186-327 32-187 (974)
35 PLN02882 aminoacyl-tRNA ligase 100.0 3.4E-30 7.5E-35 286.0 17.3 142 184-325 36-194 (1159)
36 TIGR00395 leuS_arch leucyl-tRN 100.0 6.9E-30 1.5E-34 279.9 16.9 142 185-326 24-189 (938)
37 PTZ00427 isoleucine-tRNA ligas 100.0 5.4E-30 1.2E-34 284.0 16.0 141 184-324 100-257 (1205)
38 COG0060 IleS Isoleucyl-tRNA sy 100.0 1.7E-29 3.8E-34 270.6 14.4 145 184-328 47-207 (933)
39 PLN02959 aminoacyl-tRNA ligase 100.0 1.7E-28 3.6E-33 271.6 15.6 142 185-326 44-261 (1084)
40 PRK01611 argS arginyl-tRNA syn 99.9 8.8E-28 1.9E-32 248.2 13.9 186 78-314 52-238 (507)
41 KOG0432|consensus 99.9 2.7E-25 5.8E-30 232.1 15.6 186 132-326 29-232 (995)
42 COG0018 ArgS Arginyl-tRNA synt 99.9 9.8E-26 2.1E-30 234.2 12.3 191 77-312 50-294 (577)
43 cd00671 ArgRS_core catalytic c 99.9 2.6E-25 5.6E-30 205.5 12.6 131 187-322 1-131 (212)
44 PRK12300 leuS leucyl-tRNA synt 99.9 8.8E-25 1.9E-29 238.9 11.3 126 201-326 1-150 (897)
45 KOG1247|consensus 99.9 7.4E-25 1.6E-29 213.5 9.4 182 179-362 7-217 (567)
46 PRK12451 arginyl-tRNA syntheta 99.9 6.8E-23 1.5E-27 214.0 14.6 186 79-313 50-288 (562)
47 PLN02286 arginine-tRNA ligase 99.9 5.9E-23 1.3E-27 214.9 12.7 184 81-313 56-292 (576)
48 TIGR00456 argS arginyl-tRNA sy 99.9 1.6E-22 3.5E-27 211.6 14.2 188 78-313 48-290 (566)
49 PRK00260 cysS cysteinyl-tRNA s 99.9 4.8E-22 1E-26 203.4 14.9 125 188-316 24-149 (463)
50 TIGR00435 cysS cysteinyl-tRNA 99.9 8.1E-22 1.7E-26 201.7 14.8 126 188-316 22-148 (465)
51 KOG0433|consensus 99.9 1.7E-21 3.6E-26 200.6 15.2 133 197-329 66-212 (937)
52 PRK12418 cysteinyl-tRNA synthe 99.9 3.1E-21 6.8E-26 192.0 15.8 127 187-317 9-140 (384)
53 TIGR03447 mycothiol_MshC cyste 99.9 4.8E-21 1E-25 191.7 14.5 125 188-316 37-166 (411)
54 PLN02946 cysteine-tRNA ligase 99.9 5.7E-21 1.2E-25 197.4 15.3 125 188-315 81-205 (557)
55 PRK14536 cysS cysteinyl-tRNA s 99.8 4.9E-20 1.1E-24 188.5 15.8 126 187-315 23-158 (490)
56 PRK14535 cysS cysteinyl-tRNA s 99.8 6.1E-20 1.3E-24 191.6 15.4 127 187-316 248-375 (699)
57 KOG0434|consensus 99.8 3.5E-20 7.5E-25 189.6 11.6 143 183-325 35-194 (1070)
58 PF00750 tRNA-synt_1d: tRNA sy 99.8 1.5E-19 3.4E-24 179.1 11.3 126 187-315 21-203 (354)
59 PRK14534 cysS cysteinyl-tRNA s 99.8 6.6E-19 1.4E-23 179.5 15.8 127 187-316 21-157 (481)
60 PTZ00399 cysteinyl-tRNA-synthe 99.8 4.1E-19 9E-24 187.8 14.8 126 188-316 61-188 (651)
61 cd00672 CysRS_core catalytic c 99.8 4.9E-19 1.1E-23 163.9 10.6 90 189-280 22-112 (213)
62 KOG0435|consensus 99.8 1.1E-19 2.4E-24 185.9 6.2 80 17-109 220-299 (876)
63 PRK04156 gltX glutamyl-tRNA sy 99.8 2.3E-18 4.9E-23 178.3 11.8 159 126-304 32-197 (567)
64 cd00674 LysRS_core_class_I cat 99.7 9.6E-18 2.1E-22 165.5 10.0 146 187-339 20-204 (353)
65 PF01406 tRNA-synt_1e: tRNA sy 99.7 7.8E-17 1.7E-21 154.7 14.0 126 187-315 8-134 (300)
66 TIGR00463 gltX_arch glutamyl-t 99.6 6.8E-16 1.5E-20 159.8 12.1 158 125-304 27-187 (560)
67 cd00802 class_I_aaRS_core cata 99.6 6.7E-16 1.4E-20 133.8 9.2 77 190-266 1-77 (143)
68 COG0215 CysS Cysteinyl-tRNA sy 99.6 2.8E-15 6.1E-20 150.9 12.8 125 188-316 23-149 (464)
69 KOG0437|consensus 99.6 4.2E-15 9.2E-20 153.7 14.0 166 153-324 17-253 (1080)
70 KOG4426|consensus 99.5 8.9E-14 1.9E-18 137.1 12.2 189 81-320 129-370 (656)
71 PRK00750 lysK lysyl-tRNA synth 99.5 9.5E-15 2.1E-19 151.2 5.4 147 188-339 25-211 (510)
72 PLN02563 aminoacyl-tRNA ligase 99.5 2E-14 4.3E-19 157.9 6.8 80 17-108 273-353 (963)
73 COG0495 LeuS Leucyl-tRNA synth 99.5 1.5E-14 3.2E-19 154.8 5.6 84 14-111 193-278 (814)
74 TIGR00396 leuS_bact leucyl-tRN 99.4 1.3E-13 2.7E-18 150.5 6.5 75 17-107 192-267 (842)
75 PF13603 tRNA-synt_1_2: Leucyl 99.4 2E-13 4.2E-18 123.6 3.7 51 44-108 1-51 (185)
76 TIGR00467 lysS_arch lysyl-tRNA 99.4 4.1E-13 8.8E-18 138.8 5.0 85 187-273 19-121 (515)
77 KOG2007|consensus 99.4 7.1E-12 1.5E-16 125.8 13.1 127 188-317 56-188 (586)
78 cd09287 GluRS_non_core catalyt 99.3 1.8E-11 3.9E-16 114.9 10.0 96 189-304 2-97 (240)
79 TIGR03838 queuosine_YadB gluta 99.3 9.4E-12 2E-16 119.1 8.1 99 190-315 2-101 (272)
80 PLN03233 putative glutamate-tR 99.3 1.7E-11 3.8E-16 126.1 9.7 96 187-304 10-105 (523)
81 PRK00390 leuS leucyl-tRNA synt 99.2 6.6E-12 1.4E-16 136.7 6.1 76 17-108 194-270 (805)
82 COG0008 GlnS Glutamyl- and glu 99.2 2.8E-11 6.1E-16 123.6 10.1 99 189-314 10-109 (472)
83 PTZ00402 glutamyl-tRNA synthet 99.2 5.3E-11 1.1E-15 123.9 11.4 96 187-303 51-146 (601)
84 PRK12558 glutamyl-tRNA synthet 99.2 4.1E-11 8.9E-16 121.7 10.2 100 189-315 3-102 (445)
85 PF00749 tRNA-synt_1c: tRNA sy 99.2 3.7E-11 8.1E-16 117.5 9.6 100 189-314 2-101 (314)
86 cd00807 GlnRS_core catalytic c 99.2 6.2E-11 1.3E-15 111.1 10.3 94 189-304 2-95 (238)
87 PTZ00437 glutaminyl-tRNA synth 99.2 5.8E-11 1.3E-15 122.7 9.9 100 188-314 51-150 (574)
88 PRK05710 glutamyl-Q tRNA(Asp) 99.2 4.8E-11 1E-15 115.5 8.7 102 188-316 5-107 (299)
89 PRK05347 glutaminyl-tRNA synth 99.2 5.2E-11 1.1E-15 123.1 9.3 96 188-304 29-124 (554)
90 TIGR00440 glnS glutaminyl-tRNA 99.2 1.1E-10 2.4E-15 120.3 10.0 95 189-304 1-95 (522)
91 PRK14703 glutaminyl-tRNA synth 99.1 7.8E-11 1.7E-15 126.4 8.6 96 188-304 31-126 (771)
92 KOG1195|consensus 99.1 1.9E-10 4.1E-15 115.8 10.7 177 95-314 58-287 (567)
93 PLN02907 glutamate-tRNA ligase 99.1 1.6E-10 3.5E-15 123.9 10.9 97 186-304 211-307 (722)
94 PRK12410 glutamylglutaminyl-tR 99.1 1.1E-10 2.4E-15 118.2 8.1 98 191-315 2-99 (433)
95 TIGR00464 gltX_bact glutamyl-t 99.1 1.7E-10 3.8E-15 118.5 8.9 95 189-304 2-96 (470)
96 cd00418 GlxRS_core catalytic c 99.1 3.7E-10 8.1E-15 105.6 9.1 90 189-300 2-92 (230)
97 PRK01406 gltX glutamyl-tRNA sy 99.1 2.7E-10 5.8E-15 117.3 8.8 94 189-304 5-106 (476)
98 PLN02627 glutamyl-tRNA synthet 99.1 6.1E-10 1.3E-14 114.9 10.3 101 188-315 45-154 (535)
99 PRK14895 gltX glutamyl-tRNA sy 99.1 4.7E-10 1E-14 115.5 9.2 101 189-315 5-105 (513)
100 PLN02859 glutamine-tRNA ligase 99.0 5.8E-10 1.2E-14 119.0 9.8 95 188-304 264-358 (788)
101 cd00808 GluRS_core catalytic c 99.0 2.5E-09 5.3E-14 100.7 9.4 90 189-300 2-100 (239)
102 KOG1147|consensus 98.8 5.3E-08 1.2E-12 98.9 11.1 101 187-309 199-299 (712)
103 PF01921 tRNA-synt_1f: tRNA sy 98.5 2.3E-07 5E-12 91.7 6.4 149 187-340 23-212 (360)
104 KOG1149|consensus 98.3 1.9E-06 4.1E-11 86.0 8.1 121 189-332 34-166 (524)
105 KOG1148|consensus 98.3 2.7E-06 5.9E-11 87.5 8.3 96 187-304 247-342 (764)
106 COG1384 LysS Lysyl-tRNA synthe 98.2 7.3E-06 1.6E-10 83.8 8.9 86 188-273 20-124 (521)
107 TIGR00395 leuS_arch leucyl-tRN 98.0 0.00025 5.5E-09 79.1 17.0 245 51-361 197-464 (938)
108 PRK06039 ileS isoleucyl-tRNA s 97.7 0.00018 4E-09 80.5 11.2 58 288-360 364-421 (975)
109 TIGR00392 ileS isoleucyl-tRNA 97.5 0.0011 2.3E-08 73.5 13.6 59 288-361 382-440 (861)
110 PRK05743 ileS isoleucyl-tRNA s 97.5 0.00065 1.4E-08 75.6 11.3 58 288-360 371-430 (912)
111 PTZ00419 valyl-tRNA synthetase 97.3 0.0021 4.5E-08 72.3 12.2 59 288-361 362-420 (995)
112 PRK12300 leuS leucyl-tRNA synt 97.1 0.0085 1.8E-07 66.8 15.1 45 50-109 157-201 (897)
113 PRK13804 ileS isoleucyl-tRNA s 97.0 0.0068 1.5E-07 68.0 12.5 58 288-360 402-466 (961)
114 PF00133 tRNA-synt_1: tRNA syn 96.7 0.025 5.4E-07 60.4 13.2 59 287-360 335-393 (601)
115 COG0060 IleS Isoleucyl-tRNA sy 96.2 0.038 8.2E-07 61.3 11.6 53 290-357 378-430 (933)
116 PLN02882 aminoacyl-tRNA ligase 96.0 0.028 6.2E-07 64.2 9.8 56 289-359 386-441 (1159)
117 PLN02381 valyl-tRNA synthetase 95.3 0.13 2.9E-06 58.4 11.6 59 287-360 428-486 (1066)
118 PF03485 Arg_tRNA_synt_N: Argi 91.7 0.035 7.5E-07 43.7 -0.9 35 81-120 51-85 (85)
119 PRK12285 tryptophanyl-tRNA syn 91.2 1.4 3E-05 44.4 9.7 74 187-273 66-139 (368)
120 cd00806 TrpRS_core catalytic c 91.0 0.97 2.1E-05 43.7 8.1 67 196-273 7-73 (280)
121 PRK12284 tryptophanyl-tRNA syn 90.9 0.96 2.1E-05 46.4 8.2 84 194-288 8-92 (431)
122 cd00805 TyrRS_core catalytic c 90.8 0.47 1E-05 45.6 5.6 72 195-271 7-81 (269)
123 COG1656 Uncharacterized conser 90.7 0.33 7.1E-06 43.2 4.0 93 214-321 17-109 (165)
124 cd00395 Tyr_Trp_RS_core cataly 90.3 1.2 2.7E-05 42.8 8.1 71 196-271 7-80 (273)
125 PF01927 Mut7-C: Mut7-C RNAse 90.2 0.53 1.2E-05 41.0 5.0 31 215-247 12-42 (147)
126 TIGR00373 conserved hypothetic 88.5 0.81 1.8E-05 40.5 5.0 54 299-359 99-153 (158)
127 PLN02886 aminoacyl-tRNA ligase 87.9 2 4.3E-05 43.6 7.8 66 195-273 53-118 (389)
128 PRK05912 tyrosyl-tRNA syntheta 87.1 1.8 3.9E-05 44.2 7.1 72 191-272 36-114 (408)
129 TIGR00233 trpS tryptophanyl-tR 87.0 2.1 4.6E-05 42.3 7.4 87 193-290 7-94 (328)
130 COG0180 TrpS Tryptophanyl-tRNA 87.0 2.2 4.7E-05 42.1 7.3 74 188-273 6-80 (314)
131 PLN02486 aminoacyl-tRNA ligase 86.7 7.8 0.00017 39.3 11.3 75 187-273 73-148 (383)
132 PTZ00427 isoleucine-tRNA ligas 86.0 1.2 2.7E-05 51.3 5.8 56 289-359 490-545 (1205)
133 PRK06266 transcription initiat 85.7 0.71 1.5E-05 41.7 3.0 45 300-344 108-153 (178)
134 PRK12556 tryptophanyl-tRNA syn 85.6 3.2 6.9E-05 41.2 7.8 68 195-273 10-77 (332)
135 PRK00927 tryptophanyl-tRNA syn 85.5 2 4.4E-05 42.5 6.4 66 195-273 8-73 (333)
136 PRK08560 tyrosyl-tRNA syntheta 85.3 3 6.5E-05 41.3 7.5 70 192-273 34-103 (329)
137 PRK13354 tyrosyl-tRNA syntheta 84.7 3 6.5E-05 42.6 7.4 76 190-271 35-113 (410)
138 PRK12283 tryptophanyl-tRNA syn 81.5 6.9 0.00015 39.8 8.3 65 196-273 10-75 (398)
139 PTZ00126 tyrosyl-tRNA syntheta 81.2 3.1 6.7E-05 42.2 5.8 74 191-273 69-142 (383)
140 COG0162 TyrS Tyrosyl-tRNA synt 81.1 5.8 0.00012 40.4 7.7 104 190-301 34-150 (401)
141 COG5270 PUA domain (predicted 76.7 1.9 4.1E-05 39.1 2.4 40 298-343 3-42 (202)
142 PRK14900 valS valyl-tRNA synth 76.6 2.8 6.2E-05 47.8 4.3 60 287-361 332-391 (1052)
143 PRK13208 valS valyl-tRNA synth 76.2 3.2 7E-05 45.9 4.6 37 53-104 199-235 (800)
144 TIGR00234 tyrS tyrosyl-tRNA sy 73.6 9.8 0.00021 38.4 6.9 37 191-231 33-70 (377)
145 smart00531 TFIIE Transcription 72.1 2.8 6.2E-05 36.5 2.3 44 298-341 88-137 (147)
146 PRK03824 hypA hydrogenase nick 71.0 24 0.00051 30.4 7.7 62 285-347 40-128 (135)
147 PLN02843 isoleucyl-tRNA synthe 70.4 3.5 7.7E-05 46.7 3.2 56 290-360 390-445 (974)
148 PRK12282 tryptophanyl-tRNA syn 69.5 17 0.00037 36.1 7.4 66 196-273 10-75 (333)
149 PF09862 DUF2089: Protein of u 69.1 4 8.7E-05 34.2 2.4 48 312-363 1-49 (113)
150 PRK05729 valS valyl-tRNA synth 68.5 6.2 0.00013 44.2 4.5 58 289-361 319-376 (874)
151 COG1592 Rubrerythrin [Energy p 67.8 8.2 0.00018 34.6 4.3 28 309-339 134-161 (166)
152 PLN02943 aminoacyl-tRNA ligase 67.7 6.7 0.00014 44.4 4.6 40 51-103 250-289 (958)
153 PF00579 tRNA-synt_1b: tRNA sy 66.7 6 0.00013 38.2 3.5 33 195-231 12-44 (292)
154 PLN02959 aminoacyl-tRNA ligase 65.0 9.3 0.0002 43.9 5.1 57 287-360 495-553 (1084)
155 COG1645 Uncharacterized Zn-fin 64.4 4.7 0.0001 34.6 2.0 44 291-342 14-59 (131)
156 PF13240 zinc_ribbon_2: zinc-r 63.2 3.8 8.3E-05 24.4 0.9 23 311-337 1-23 (23)
157 COG1675 TFA1 Transcription ini 62.1 3.6 7.9E-05 37.2 1.0 56 288-344 93-149 (176)
158 PRK12496 hypothetical protein; 61.7 4.8 0.0001 35.9 1.6 32 309-342 127-158 (164)
159 TIGR00422 valS valyl-tRNA synt 59.1 12 0.00026 41.8 4.6 59 288-361 316-374 (861)
160 COG0525 ValS Valyl-tRNA synthe 54.6 19 0.00041 40.2 5.0 58 53-126 197-258 (877)
161 PRK00398 rpoP DNA-directed RNA 53.0 13 0.00028 25.7 2.3 37 309-345 3-39 (46)
162 PTZ00348 tyrosyl-tRNA syntheta 52.0 15 0.00033 39.9 3.8 36 191-229 35-70 (682)
163 KOG2713|consensus 50.9 48 0.001 32.4 6.5 71 194-273 19-89 (347)
164 PF13248 zf-ribbon_3: zinc-rib 49.8 8.4 0.00018 23.4 0.8 24 310-337 3-26 (26)
165 TIGR01206 lysW lysine biosynth 49.3 12 0.00025 27.3 1.7 43 311-355 4-48 (54)
166 TIGR03037 anthran_nbaC 3-hydro 47.7 12 0.00026 33.3 1.8 20 305-324 110-129 (159)
167 PF05191 ADK_lid: Adenylate ki 46.3 16 0.00035 24.2 1.8 31 310-340 2-34 (36)
168 COG1867 TRM1 N2,N2-dimethylgua 45.7 8.5 0.00019 38.7 0.6 111 211-335 136-265 (380)
169 COG5257 GCD11 Translation init 44.8 39 0.00084 33.8 5.0 56 306-365 54-109 (415)
170 PF07754 DUF1610: Domain of un 44.7 14 0.0003 22.4 1.2 24 312-335 1-24 (24)
171 TIGR00640 acid_CoA_mut_C methy 44.4 1.1E+02 0.0023 26.1 7.2 21 212-232 19-39 (132)
172 PRK13264 3-hydroxyanthranilate 42.5 15 0.00033 33.2 1.7 36 305-340 116-170 (177)
173 COG0375 HybF Zn finger protein 41.9 35 0.00075 28.7 3.6 45 301-347 62-107 (115)
174 COG0846 SIR2 NAD-dependent pro 41.3 38 0.00082 32.3 4.3 41 305-346 118-164 (250)
175 PF14369 zf-RING_3: zinc-finge 40.3 23 0.00049 23.3 1.8 28 309-336 2-30 (35)
176 cd06545 GH18_3CO4_chitinase Th 39.2 1E+02 0.0023 28.8 7.0 107 188-303 26-135 (253)
177 cd01675 RNR_III Class III ribo 37.9 61 0.0013 34.5 5.6 48 285-336 493-541 (555)
178 PRK12380 hydrogenase nickel in 37.2 49 0.0011 27.5 3.9 45 301-347 62-107 (113)
179 COG1439 Predicted nucleic acid 37.1 38 0.00082 30.7 3.3 38 302-343 132-169 (177)
180 COG2185 Sbm Methylmalonyl-CoA 37.0 56 0.0012 28.6 4.3 27 204-233 24-50 (143)
181 cd02071 MM_CoA_mut_B12_BD meth 36.6 2.1E+02 0.0045 23.6 7.7 30 197-232 7-36 (122)
182 cd02156 nt_trans nucleotidyl t 36.2 35 0.00076 27.4 2.8 14 194-208 5-18 (105)
183 PF01475 FUR: Ferric uptake re 36.2 1.5E+02 0.0032 24.3 6.7 48 286-339 42-92 (120)
184 COG3024 Uncharacterized protei 35.4 15 0.00032 27.7 0.4 18 328-345 8-25 (65)
185 PRK13794 hypothetical protein; 34.0 30 0.00065 36.1 2.5 34 302-341 3-36 (479)
186 COG3171 Uncharacterized protei 32.3 1.1E+02 0.0023 25.8 5.0 56 262-317 23-80 (119)
187 cd00598 GH18_chitinase-like Th 32.2 2.3E+02 0.0051 25.0 7.9 104 192-301 31-142 (210)
188 smart00661 RPOL9 RNA polymeras 32.0 22 0.00047 24.7 0.8 26 311-336 2-29 (52)
189 COG1996 RPC10 DNA-directed RNA 31.6 36 0.00077 24.3 1.8 37 307-343 4-40 (49)
190 PRK00564 hypA hydrogenase nick 31.5 79 0.0017 26.4 4.2 44 303-347 65-109 (117)
191 TIGR00375 conserved hypothetic 31.4 24 0.00052 35.7 1.3 33 305-338 236-269 (374)
192 PF00975 Thioesterase: Thioest 31.4 21 0.00046 32.1 0.9 37 197-233 64-101 (229)
193 TIGR01610 phage_O_Nterm phage 30.9 81 0.0018 25.1 4.1 30 286-315 61-90 (95)
194 COG2995 PqiA Uncharacterized p 30.8 25 0.00054 35.7 1.2 32 309-343 220-251 (418)
195 PRK03681 hypA hydrogenase nick 30.7 69 0.0015 26.7 3.7 44 302-346 63-107 (114)
196 PF04405 ScdA_N: Domain of Unk 30.2 42 0.00092 24.4 2.1 45 211-257 5-52 (56)
197 PF05502 Dynactin_p62: Dynacti 30.2 49 0.0011 34.7 3.3 39 305-343 22-68 (483)
198 PF02662 FlpD: Methyl-viologen 30.2 2.6E+02 0.0055 23.5 7.2 94 187-300 28-124 (124)
199 smart00834 CxxC_CXXC_SSSS Puta 30.1 57 0.0012 21.3 2.6 30 309-338 5-37 (41)
200 PF10009 DUF2252: Uncharacteri 29.5 1.5E+02 0.0033 30.0 6.7 91 196-299 45-153 (385)
201 TIGR00100 hypA hydrogenase nic 29.4 85 0.0018 26.1 4.1 43 302-346 63-106 (115)
202 PF06750 DiS_P_DiS: Bacterial 29.3 37 0.00079 27.3 1.8 29 310-338 34-69 (92)
203 COG3286 Uncharacterized protei 28.5 73 0.0016 29.3 3.7 89 210-308 89-178 (204)
204 PRK05978 hypothetical protein; 28.5 33 0.00072 30.1 1.5 30 312-341 36-66 (148)
205 COG3357 Predicted transcriptio 28.4 1.3E+02 0.0027 24.4 4.6 58 287-348 38-95 (97)
206 PF07295 DUF1451: Protein of u 28.2 80 0.0017 27.6 3.9 49 289-337 89-140 (146)
207 KOG2145|consensus 28.2 45 0.00098 32.7 2.5 27 186-212 84-110 (397)
208 COG3001 Uncharacterized protei 27.8 4.1E+02 0.0088 25.7 8.6 111 187-325 86-221 (286)
209 COG1545 Predicted nucleic-acid 27.6 97 0.0021 26.8 4.2 43 290-342 16-60 (140)
210 PLN02674 adenylate kinase 27.4 1.2E+02 0.0026 28.8 5.2 49 310-362 159-209 (244)
211 PF09297 zf-NADH-PPase: NADH p 27.3 25 0.00053 22.3 0.4 25 311-335 5-29 (32)
212 smart00345 HTH_GNTR helix_turn 27.3 1.2E+02 0.0025 20.9 4.0 26 286-311 34-59 (60)
213 PF10571 UPF0547: Uncharacteri 26.8 40 0.00087 20.7 1.2 21 312-336 3-23 (26)
214 COG0423 GRS1 Glycyl-tRNA synth 26.7 1E+02 0.0022 32.7 4.9 53 296-348 75-150 (558)
215 PRK00420 hypothetical protein; 26.6 37 0.00081 28.4 1.4 45 291-340 9-53 (112)
216 PRK02261 methylaspartate mutas 26.3 4E+02 0.0086 22.7 7.8 27 197-229 11-37 (137)
217 cd07377 WHTH_GntR Winged helix 26.2 1.2E+02 0.0026 21.2 4.0 27 286-312 39-65 (66)
218 PRK07111 anaerobic ribonucleos 26.0 95 0.0021 34.3 4.8 59 286-349 656-717 (735)
219 COG2401 ABC-type ATPase fused 25.9 49 0.0011 34.4 2.3 34 306-343 127-160 (593)
220 PF14671 DSPn: Dual specificit 25.3 70 0.0015 27.9 2.9 41 194-234 37-78 (141)
221 TIGR00308 TRM1 tRNA(guanine-26 24.8 68 0.0015 32.4 3.2 48 225-272 141-198 (374)
222 KOG2845|consensus 24.8 16 0.00036 37.9 -1.2 51 312-364 173-242 (505)
223 PF01726 LexA_DNA_bind: LexA D 24.2 1E+02 0.0022 23.0 3.3 22 286-307 40-61 (65)
224 PRK14890 putative Zn-ribbon RN 24.0 60 0.0013 24.1 1.9 31 310-340 8-38 (59)
225 smart00659 RPOLCX RNA polymera 23.9 85 0.0018 21.7 2.6 35 309-344 2-36 (44)
226 TIGR00125 cyt_tran_rel cytidyl 23.8 42 0.00091 24.1 1.1 10 199-208 9-18 (66)
227 COG1908 FrhD Coenzyme F420-red 23.7 3.5E+02 0.0076 23.1 6.6 49 253-301 75-126 (132)
228 KOG2805|consensus 23.5 2E+02 0.0043 28.7 5.9 77 209-302 15-96 (377)
229 PF00392 GntR: Bacterial regul 22.9 1.7E+02 0.0036 21.2 4.2 26 286-311 38-63 (64)
230 PF03119 DNA_ligase_ZBD: NAD-d 22.8 46 0.001 20.7 1.0 16 329-344 1-16 (28)
231 PF14803 Nudix_N_2: Nudix N-te 22.7 46 0.001 21.8 1.0 25 311-335 2-30 (34)
232 PRK13795 hypothetical protein; 22.4 82 0.0018 34.1 3.4 35 300-340 3-37 (636)
233 TIGR02098 MJ0042_CXXC MJ0042 f 22.3 52 0.0011 21.4 1.3 28 311-338 4-36 (38)
234 TIGR02827 RNR_anaer_Bdell anae 22.1 1.9E+02 0.0041 31.2 6.0 63 286-352 508-573 (586)
235 PRK00762 hypA hydrogenase nick 22.0 1.3E+02 0.0029 25.3 4.0 45 302-347 63-113 (124)
236 PRK05654 acetyl-CoA carboxylas 21.4 38 0.00083 33.1 0.6 26 311-336 29-55 (292)
237 COG3078 Uncharacterized protei 21.1 1.1E+02 0.0023 27.1 3.2 26 248-273 125-150 (169)
238 PF01155 HypA: Hydrogenase exp 21.0 85 0.0018 26.0 2.5 45 301-347 62-107 (113)
239 PF01396 zf-C4_Topoisom: Topoi 20.8 1E+02 0.0022 20.6 2.4 25 328-352 2-27 (39)
240 PF07191 zinc-ribbons_6: zinc- 20.5 56 0.0012 25.1 1.2 29 308-341 16-44 (70)
241 PF08784 RPA_C: Replication pr 20.4 84 0.0018 25.1 2.4 19 286-304 79-97 (102)
242 PF13597 NRDD: Anaerobic ribon 20.1 1.1E+02 0.0023 32.7 3.6 62 286-352 466-531 (546)
243 PRK00418 DNA gyrase inhibitor; 20.1 40 0.00086 25.3 0.3 17 328-344 7-23 (62)
No 1
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-41 Score=349.52 Aligned_cols=177 Identities=27% Similarity=0.423 Sum_probs=169.1
Q ss_pred CCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy7914 185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ 264 (365)
Q Consensus 185 ~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~ 264 (365)
+++++||++.|||||+|||||++.++.+|+++||+|++|++|++++|+|+||++|+.+|+++|++|+++++++++.++++
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~ 83 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKEL 83 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc-------------------
Q psy7914 265 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD------------------- 325 (365)
Q Consensus 265 l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve------------------- 325 (365)
+++|+|+|| .|.+|+++.|.+.++++|.+|+++|+||.+...+|||++|++||+|++|+
T Consensus 84 ~~~l~IsfD--~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD~Ce~C 161 (558)
T COG0143 84 FKALNISFD--NFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENC 161 (558)
T ss_pred HHHhCCccc--ccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheeccCCCcCccccCcchhhhc
Confidence 999999999 88999999999999999999999999999999999999999999999985
Q ss_pred ---------cCCCccCCCCccEEEEeeeeeEeCchhHHHHHhhhccc
Q psy7914 326 ---------EQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDSVS 363 (365)
Q Consensus 326 ---------~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~~~~ 363 (365)
.+|+|.+||++||.|+++||||+|++|+++|++|+...
T Consensus 162 g~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~ 208 (558)
T COG0143 162 GRTLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESN 208 (558)
T ss_pred cCcCCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhC
Confidence 24567788899999999999999999999999998753
No 2
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=2.9e-40 Score=357.61 Aligned_cols=176 Identities=60% Similarity=1.121 Sum_probs=171.3
Q ss_pred CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy7914 184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKS 263 (365)
Q Consensus 184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~ 263 (365)
++++++++.+||||||.|||||+++++++|+++||+||+|++|++.+|+|+||+||+..|.+.|++|.++++++.+.|++
T Consensus 27 ~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~ 106 (842)
T TIGR00396 27 NKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKK 106 (842)
T ss_pred CCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEee
Q psy7914 264 QLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLS 343 (365)
Q Consensus 264 ~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~ 343 (365)
+|++||+++||++++.|+++.|++.++++|.+|+++|+||++..+++|||.|+|+|++.||+.+|+|..||.+++.++++
T Consensus 107 ~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~ 186 (842)
T TIGR00396 107 QLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELK 186 (842)
T ss_pred HHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999997778999999999999999
Q ss_pred eeeEeCchhHHHHHhh
Q psy7914 344 QWFIRTTRLANLVSLV 359 (365)
Q Consensus 344 ~~ff~Ls~~~~~L~~~ 359 (365)
+|||+|++|+++|.++
T Consensus 187 ~~f~~i~~~~~~l~~~ 202 (842)
T TIGR00396 187 QWFLKITAYAEELLND 202 (842)
T ss_pred eeEEehhhhHHHHHHH
Confidence 9999999999999875
No 3
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=3e-40 Score=354.46 Aligned_cols=180 Identities=20% Similarity=0.211 Sum_probs=170.1
Q ss_pred CCCCCCCceEEEecCCCCCCCCchHHHHH-HHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHH
Q psy7914 180 EGKRREDNFYVLSMFPYPSGSLHMGHVRV-YTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNI 258 (365)
Q Consensus 180 ~~~~~~~~~~I~~~~PnpnG~LHiGHar~-~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~ 258 (365)
.|..++++++||+++|||||+|||||+++ ++.+|+++||+|++|++|++++|+|+||++|+.+|++.|++|+++++++.
T Consensus 11 ~~~~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~ 90 (801)
T PLN02610 11 LPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYH 90 (801)
T ss_pred CCCCCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHH
Confidence 45567789999999999999999999997 67899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc-------------
Q psy7914 259 ATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD------------- 325 (365)
Q Consensus 259 ~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve------------- 325 (365)
+.+++++++|||++| .|++|+++.|.+.|+++|.+|+++|+||++.+.+|||++|++||+|++|+
T Consensus 91 ~~~~~~~~~l~i~~D--~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a 168 (801)
T PLN02610 91 AIHKEVYDWFDISFD--KFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSA 168 (801)
T ss_pred HHHHHHHHHcCCccc--cCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCcccc
Confidence 999999999999998 88999999999999999999999999999999999999999999999874
Q ss_pred -----------------cCCCccCCCCccEEEEeeeeeEeCchhHHHHHhhhc
Q psy7914 326 -----------------EQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDS 361 (365)
Q Consensus 326 -----------------~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~~ 361 (365)
++|+|++||.++++++++||||+|++|+++|.+|+.
T Consensus 169 ~Gd~Ce~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~ 221 (801)
T PLN02610 169 RGDQCEKCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYIN 221 (801)
T ss_pred ccchhhhccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHH
Confidence 134677799999999999999999999999999985
No 4
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=3.8e-40 Score=329.14 Aligned_cols=171 Identities=33% Similarity=0.537 Sum_probs=162.7
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHc---------CCCH-------
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH---------GIDP------- 250 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~---------g~~~------- 250 (365)
+++|+++||||||+|||||+++++++|+++||+||+|++|++++|+|+||+||+..|+++ ++++
T Consensus 2 ~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~ 81 (382)
T cd00817 2 VFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKC 81 (382)
T ss_pred cEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999764 3444
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCc
Q psy7914 251 REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGIS 330 (365)
Q Consensus 251 ~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c 330 (365)
+++++++.+.+++++++|||++||+.++.|+++.|.+.|+++|.+|+++|+||++.++++||+.|+++|++.|| |
T Consensus 82 ~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev-----c 156 (382)
T cd00817 82 WEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV-----C 156 (382)
T ss_pred HHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh-----c
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred cCCCCccEEEEeeeeeEeCchhHHHHHhhhcc
Q psy7914 331 WRSGARVEKRRLSQWFIRTTRLANLVSLVDSV 362 (365)
Q Consensus 331 ~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~~~ 362 (365)
..||.+++.+.++||||+|++|+++|.+++..
T Consensus 157 ~~cg~~~~~~~~~qwf~~l~~~~~~l~~~~~~ 188 (382)
T cd00817 157 SRSGDVIEPLLKPQWFVKVKDLAKKALEAVKE 188 (382)
T ss_pred ccCCCeEEEEecCeeEEehHHHHHHHHHHHhc
Confidence 99999999999999999999999999998754
No 5
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=6.3e-40 Score=356.93 Aligned_cols=176 Identities=48% Similarity=0.878 Sum_probs=171.1
Q ss_pred CCCceEEEecCCCCCCC-CchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHH
Q psy7914 184 REDNFYVLSMFPYPSGS-LHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMK 262 (365)
Q Consensus 184 ~~~~~~I~~~~PnpnG~-LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~ 262 (365)
++++++|+++||||||. |||||+++++++|+++||+||+|++|++.+|||+||+||+..|.+.|..|.+++.++.+.|+
T Consensus 108 ~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~ 187 (963)
T PLN02563 108 SKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFR 187 (963)
T ss_pred CCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHH
Confidence 45679999999999996 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEe
Q psy7914 263 SQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRL 342 (365)
Q Consensus 263 ~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~ 342 (365)
++|++||+++||++++.|+++.|++.++++|.+|+++|+||++..+++|||.|+|+|++.||+ +++|.+||.+++.+++
T Consensus 188 ~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~-~~~~~~~~~~~~~~~~ 266 (963)
T PLN02563 188 SQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVV-DGLSERGGHPVIRKPM 266 (963)
T ss_pred HHHHHhCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhh-cCCCcCCCCceEEEec
Confidence 999999999999999999999999999999999999999999999999999999999999995 7899999999999999
Q ss_pred eeeeEeCchhHHHHHhhh
Q psy7914 343 SQWFIRTTRLANLVSLVD 360 (365)
Q Consensus 343 ~~~ff~Ls~~~~~L~~~~ 360 (365)
++|||+|++|+++|.++.
T Consensus 267 ~q~f~~it~ya~~L~~~l 284 (963)
T PLN02563 267 RQWMLKITAYADRLLEDL 284 (963)
T ss_pred ceeEEecchhHHHHHHhh
Confidence 999999999999999875
No 6
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=6e-40 Score=343.32 Aligned_cols=175 Identities=17% Similarity=0.234 Sum_probs=169.4
Q ss_pred CCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy7914 185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ 264 (365)
Q Consensus 185 ~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~ 264 (365)
+++++|++|||||||+|||||+++++++|+++||+|++|++|.+++|+||||++|+..|.+.|.+|.++|+++...+++.
T Consensus 68 ~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~ 147 (616)
T PLN02224 68 ADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTL 147 (616)
T ss_pred CCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeee
Q psy7914 265 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQ 344 (365)
Q Consensus 265 l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~ 344 (365)
+++|||++| .+++|+++.|.+.|+++|.+|+++|+||++++.+|||++|++++++.++..+++|+.||.++++++++|
T Consensus 148 ~~~l~I~~D--~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~~~~~~~~~~~~~~~~~e~~ 225 (616)
T PLN02224 148 WKDLDIAYD--KFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELLENNCCPVHQMPCVARKEDN 225 (616)
T ss_pred HHHcCCCCC--cCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHcCCCCCCCCCCcceEEecce
Confidence 999999887 889999999999999999999999999999999999999999999999866689999999999999999
Q ss_pred eeEeCchhHHHHHhhhc
Q psy7914 345 WFIRTTRLANLVSLVDS 361 (365)
Q Consensus 345 ~ff~Ls~~~~~L~~~~~ 361 (365)
|||+|++|+++|++|+.
T Consensus 226 ~ff~Ls~~~~~L~~~~~ 242 (616)
T PLN02224 226 YFFALSKYQKPLEDILA 242 (616)
T ss_pred EEEEhHHHHHHHHHHHH
Confidence 99999999999999985
No 7
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=6e-40 Score=328.32 Aligned_cols=173 Identities=28% Similarity=0.501 Sum_probs=152.1
Q ss_pred eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 267 (365)
Q Consensus 188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~ 267 (365)
++||+++|||||+|||||++.++.+|+++||+|++|++|.+++|+|+||++|+.+|+++|++|+++++++.+.|+++|++
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~ 80 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEA 80 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc-c--------------------
Q psy7914 268 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD-E-------------------- 326 (365)
Q Consensus 268 lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve-~-------------------- 326 (365)
|||++| .|.+|+++.|.+.|+++|++|+++|+||+++..+|||+.|++||++++|+ .
T Consensus 81 ~~I~~D--~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~CP~C~~~~a~g~~Ce~cG~~ 158 (391)
T PF09334_consen 81 LNISYD--RFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEGTCPYCGSDKARGDQCENCGRP 158 (391)
T ss_dssp TT---S--EEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETCEETTT--SSCTTTEETTTSSB
T ss_pred cCCCCc--ceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeeccccCcCccccCCCcccCCCCC
Confidence 999999 88999999999999999999999999999999999999999999999994 1
Q ss_pred -------CCCccCCCCccEEEEeeeeeEeCchhHHHHHhhhcc
Q psy7914 327 -------QGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDSV 362 (365)
Q Consensus 327 -------~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~~~ 362 (365)
+++|..||.+++++++++|||+|++|+++|++|...
T Consensus 159 ~~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~ 201 (391)
T PF09334_consen 159 LEPEELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLES 201 (391)
T ss_dssp EECCCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHH
T ss_pred cccccccCCccccccccCccccceEEEEehHHhHHHHHHHHhc
Confidence 223445566667999999999999999999999853
No 8
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=3.5e-39 Score=348.14 Aligned_cols=173 Identities=61% Similarity=1.102 Sum_probs=169.1
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ 266 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~ 266 (365)
+++++.+||||||.|||||+++++++|+++||+||+|++|++++|+|+||+||+..|.+.|++|.++++++.+.|+++|+
T Consensus 33 ~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~ 112 (805)
T PRK00390 33 KYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLK 112 (805)
T ss_pred CEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeee
Q psy7914 267 GFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWF 346 (365)
Q Consensus 267 ~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~f 346 (365)
+||+++||++++.|+++.|.+.++++|.+|+++|+||++..+++|||.|+|+|++.||+ +++|..||.+++.+++++||
T Consensus 113 ~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~-~~~~~~~~~~~~~~~~~~~f 191 (805)
T PRK00390 113 SLGFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVI-DGRCWRCGAPVEKKELRQWF 191 (805)
T ss_pred HhCCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhh-CCeecccCCeeEEEecceee
Confidence 99999999999999999999999999999999999999999999999999999999996 68999999999999999999
Q ss_pred EeCchhHHHHHhhh
Q psy7914 347 IRTTRLANLVSLVD 360 (365)
Q Consensus 347 f~Ls~~~~~L~~~~ 360 (365)
|+|++|+++|.++.
T Consensus 192 ~~i~~~~~~L~~~l 205 (805)
T PRK00390 192 LKITDYADELLDDL 205 (805)
T ss_pred EecchhHHHHHHHH
Confidence 99999999998864
No 9
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.5e-39 Score=340.27 Aligned_cols=175 Identities=25% Similarity=0.375 Sum_probs=168.8
Q ss_pred CceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy7914 186 DNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQL 265 (365)
Q Consensus 186 ~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l 265 (365)
++++|++++|||||++||||+++++.+|+++||+|++|++|.+++|+||||++|+..|++.|++|.++++.+.+.|+++|
T Consensus 4 ~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l 83 (648)
T PRK12267 4 KTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELW 83 (648)
T ss_pred CCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeee
Q psy7914 266 QGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQW 345 (365)
Q Consensus 266 ~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ 345 (365)
++|||++| .+.+|+++.|.+.++++|.+|.++|+||+++..+|||+.|++||+++++..+|+|+.||.++|+++++||
T Consensus 84 ~~lgI~~D--~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~~~~c~~cg~~~e~~~~~~~ 161 (648)
T PRK12267 84 KKLDISYD--KFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLVDGGKCPDCGREVELVKEESY 161 (648)
T ss_pred HHcCCCCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhccCCcCCCCCCcCeEEecceE
Confidence 99999998 7788999999999999999999999999999999999999999999998544899999999999999999
Q ss_pred eEeCchhHHHHHhhhcc
Q psy7914 346 FIRTTRLANLVSLVDSV 362 (365)
Q Consensus 346 ff~Ls~~~~~L~~~~~~ 362 (365)
||+|++|+++|.+|+..
T Consensus 162 f~~l~~~~~~l~~~~~~ 178 (648)
T PRK12267 162 FFRMSKYQDRLLEYYEE 178 (648)
T ss_pred EEEcHHHHHHHHHHHhh
Confidence 99999999999999853
No 10
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-38 Score=337.30 Aligned_cols=172 Identities=60% Similarity=1.075 Sum_probs=168.2
Q ss_pred CceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy7914 186 DNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQL 265 (365)
Q Consensus 186 ~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l 265 (365)
+|++|+.+.|||||.||+||.|+|+++|+++||+||+||+|++.+|||..|+|++..|.+.+.+|..|+..+.+.++++|
T Consensus 34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~ql 113 (814)
T COG0495 34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQL 113 (814)
T ss_pred CceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeee
Q psy7914 266 QGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQW 345 (365)
Q Consensus 266 ~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ 345 (365)
++||.++||++++.|+||+|+++++++|.+|+++|++|+++.+|.|||.|+|.|++.+| .+|.|++||.+|+.++..+|
T Consensus 114 k~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv-~~g~~~r~~~~V~~kel~qw 192 (814)
T COG0495 114 KSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQV-IDGGCWRCGEPVEIKELTQW 192 (814)
T ss_pred HHhCCccccccceecCCccHHHHHHHHHHHHHHCCCEEeccccceeCCCcCCcccccee-ecCCcccCCCceeEeeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999 48888999999999999999
Q ss_pred eEeCchhHHHHHh
Q psy7914 346 FIRTTRLANLVSL 358 (365)
Q Consensus 346 ff~Ls~~~~~L~~ 358 (365)
||++++|+++|.+
T Consensus 193 ~~kit~yae~ll~ 205 (814)
T COG0495 193 FFKITDYADELLD 205 (814)
T ss_pred EEEechhHHHHHh
Confidence 9999999998764
No 11
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7.4e-38 Score=332.75 Aligned_cols=173 Identities=27% Similarity=0.415 Sum_probs=165.8
Q ss_pred CceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy7914 186 DNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQL 265 (365)
Q Consensus 186 ~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l 265 (365)
++++|++++|||||+|||||+++++++|+++||+|++|++|.+++|+|+||++|+..|++.|++|.++++++.+.|++++
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~ 81 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDF 81 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc--------------------
Q psy7914 266 QGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD-------------------- 325 (365)
Q Consensus 266 ~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve-------------------- 325 (365)
++|||++| .+.+|+++.|.+.++++|.+|+++|+||++++.+|||+.|++||++++|+
T Consensus 82 ~~l~i~~d--~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~cg 159 (673)
T PRK00133 82 AGFGISFD--NYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCG 159 (673)
T ss_pred HHhCCCCC--CCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheecccCCCCCcccCCchhhhcc
Confidence 99999988 67899999999999999999999999999999999999999999999875
Q ss_pred --------cCCCccCCCCccEEEEeeeeeEeCchhHHHHHhhh
Q psy7914 326 --------EQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVD 360 (365)
Q Consensus 326 --------~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~ 360 (365)
.+++|.+||.++|+++++||||+|++|+++|.+|+
T Consensus 160 ~~~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~ 202 (673)
T PRK00133 160 ATYSPTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWI 202 (673)
T ss_pred ccCChHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHH
Confidence 14568889999999999999999999999999996
No 12
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.2e-37 Score=322.80 Aligned_cols=175 Identities=27% Similarity=0.429 Sum_probs=164.6
Q ss_pred CCceEEEecCCCCCCCCchHHHHHH-HHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy7914 185 EDNFYVLSMFPYPSGSLHMGHVRVY-TISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKS 263 (365)
Q Consensus 185 ~~~~~I~~~~PnpnG~LHiGHar~~-v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~ 263 (365)
+++++|+++||||||.|||||++++ +.+|+++||+|++|++|.+++|+||||++|+.+|++.|+++.++++++.+.|++
T Consensus 2 ~~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 81 (556)
T PRK12268 2 MMRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKE 81 (556)
T ss_pred CCcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999997 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCcccccccccc-----------------
Q psy7914 264 QLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDE----------------- 326 (365)
Q Consensus 264 ~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~----------------- 326 (365)
++++|||.+| .+++|+++.|.+.++++|.+|+++|+||++.+.+|||+.|+++|++++|.-
T Consensus 82 ~~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~G~~ce~ 159 (556)
T PRK12268 82 DFKKLGISYD--LFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDN 159 (556)
T ss_pred HHHHcCCcCC--CCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccceeccCCCCCCcccCCchhhh
Confidence 9999999887 678999999999999999999999999999999999999999999999741
Q ss_pred -----------CCCccCCCCccEEEEeeeeeEeCchhHHHHHhhhc
Q psy7914 327 -----------QGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDS 361 (365)
Q Consensus 327 -----------~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~~ 361 (365)
+|+|.+||.++|++.+++|||+|++|+++|.++..
T Consensus 160 cg~~~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~ 205 (556)
T PRK12268 160 CGALLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIE 205 (556)
T ss_pred ccccCChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHh
Confidence 23566677899999999999999999999999875
No 13
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.9e-37 Score=316.76 Aligned_cols=173 Identities=23% Similarity=0.340 Sum_probs=166.3
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ 266 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~ 266 (365)
+++|+++||||||++||||+|+++.+|+++||+|++|++|.+++|+||||++|+..|++.|+++.++++.+.+.|+++|+
T Consensus 2 ~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 81 (511)
T PRK11893 2 KFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWE 81 (511)
T ss_pred CEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccC--CCccCCCCccEEEEeee
Q psy7914 267 GFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQ--GISWRSGARVEKRRLSQ 344 (365)
Q Consensus 267 ~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~--~~c~~~g~~~e~~~~~~ 344 (365)
+|||.+| .+.+|+++.|.+.|+++|.+|.++|++|++.+.+|||+.|+++|+++++. + |.|++||.+++++++++
T Consensus 82 ~l~I~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~-~~~p~~~~~~~~~~~~~~~~ 158 (511)
T PRK11893 82 ALNISYD--DFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELI-EDGYRCPPTGAPVEWVEEES 158 (511)
T ss_pred HhCCCcC--CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhc-CCCCCCCCCCCcceEEecCe
Confidence 9999988 67889999999999999999999999999999999999999999999985 4 56999999999999999
Q ss_pred eeEeCchhHHHHHhhhcc
Q psy7914 345 WFIRTTRLANLVSLVDSV 362 (365)
Q Consensus 345 ~ff~Ls~~~~~L~~~~~~ 362 (365)
|||+|++|+++|.+++..
T Consensus 159 ~f~~l~~~~~~l~~~~~~ 176 (511)
T PRK11893 159 YFFRLSKYQDKLLELYEA 176 (511)
T ss_pred EEEEcHHHHHHHHHHHHh
Confidence 999999999999998753
No 14
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6.7e-37 Score=331.10 Aligned_cols=140 Identities=40% Similarity=0.665 Sum_probs=134.4
Q ss_pred CCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHH-cCCCHH------------
Q psy7914 185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ-HGIDPR------------ 251 (365)
Q Consensus 185 ~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~-~g~~~~------------ 251 (365)
+++++|+.|||||||+|||||+++++++|+++||+||+|++|++.+|+|+||+||+..|++ .|+++.
T Consensus 37 ~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~ 116 (800)
T PRK13208 37 KPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCR 116 (800)
T ss_pred CCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHH
Confidence 4579999999999999999999999999999999999999999999999999999999987 487765
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCcccccccc
Q psy7914 252 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQV 324 (365)
Q Consensus 252 e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~ev 324 (365)
+|++++.+.|++++++||+++||++++.|+++.|.+.++++|.+|+++|+||++.++++|||.|+|+||+.||
T Consensus 117 ~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lsd~ev 189 (800)
T PRK13208 117 ELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRCETAIAQAEV 189 (800)
T ss_pred HHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCCccchhhh
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999977
No 15
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=1.5e-36 Score=314.94 Aligned_cols=172 Identities=24% Similarity=0.353 Sum_probs=163.0
Q ss_pred eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 267 (365)
Q Consensus 188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~ 267 (365)
++|++++|||||+|||||+++++.+|+++||+|++|++|.+++|+||||++|+..|+++|++|.++++.+.+.|++++++
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~ 80 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKW 80 (530)
T ss_pred CEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc----------------------
Q psy7914 268 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD---------------------- 325 (365)
Q Consensus 268 lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve---------------------- 325 (365)
|||.+| .+.+|+++.|.+.++++|.+|.++|++|++++.+|||+.|+++|++++|+
T Consensus 81 LgI~~D--~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~cg~~ 158 (530)
T TIGR00398 81 LNISFD--RFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRH 158 (530)
T ss_pred hCCCCC--CCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhhcccc
Confidence 999988 56789999999999999999999999999999999999999999999764
Q ss_pred ------cCCCccCCCCccEEEEeeeeeEeCchhHHHHHhhhc
Q psy7914 326 ------EQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDS 361 (365)
Q Consensus 326 ------~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~~ 361 (365)
.+|+|++||.++|+++++||||+|++|+++|.+++.
T Consensus 159 ~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~ 200 (530)
T TIGR00398 159 LEPTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIR 200 (530)
T ss_pred CCHHHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHH
Confidence 124577789999999999999999999999999985
No 16
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=1.3e-35 Score=289.94 Aligned_cols=157 Identities=23% Similarity=0.365 Sum_probs=151.5
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ 266 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~ 266 (365)
+++|+.++|||||+|||||+++++++|+++||+|++|++|.+++|+||||++|+.+|++.|++|+++++.+.+.|+++|+
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~ 80 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFK 80 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeee
Q psy7914 267 GFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWF 346 (365)
Q Consensus 267 ~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~f 346 (365)
+|||.+| .+.+|+++.|.+.++++|++|.++|++|+++..++||+.|+++|+ |++++++||
T Consensus 81 ~LgI~~D--~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~-----------------e~~~~~~~f 141 (319)
T cd00814 81 WLNISFD--YFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP-----------------EWREEEHYF 141 (319)
T ss_pred HcCCcCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee-----------------EEEeeeeEE
Confidence 9999888 778899999999999999999999999999999999999999999 899999999
Q ss_pred EeCchhHHHHHhhhcc
Q psy7914 347 IRTTRLANLVSLVDSV 362 (365)
Q Consensus 347 f~Ls~~~~~L~~~~~~ 362 (365)
|+|++|+++|++++..
T Consensus 142 f~l~~~~~~l~~~~~~ 157 (319)
T cd00814 142 FRLSKFQDRLLEWLEK 157 (319)
T ss_pred EEhHHHHHHHHHHHHh
Confidence 9999999999988653
No 17
>KOG0435|consensus
Probab=100.00 E-value=5.9e-37 Score=311.27 Aligned_cols=175 Identities=62% Similarity=1.173 Sum_probs=170.7
Q ss_pred CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy7914 184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKS 263 (365)
Q Consensus 184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~ 263 (365)
+++| +|+...|||+|.|||||.|.|++.|++|||.||+||+|+..+|||.+|+|.+.+|.+.|++|..|...+++.+++
T Consensus 56 sk~K-YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~ 134 (876)
T KOG0435|consen 56 SKKK-YILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQ 134 (876)
T ss_pred CCCc-eEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHHHH
Confidence 3445 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEee
Q psy7914 264 QLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLS 343 (365)
Q Consensus 264 ~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~ 343 (365)
+|++||+.|||+++.+|++|+|+++.|.+|.+|+++|++|+.+..|.|||.+.|.|++.+|+.+|+++++|+++|.+...
T Consensus 135 Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~Lr 214 (876)
T KOG0435|consen 135 QLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLR 214 (876)
T ss_pred HHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhccccccccCcccceeecchhhcccCccccccchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEeCchhHHHHHhh
Q psy7914 344 QWFIRTTRLANLVSLV 359 (365)
Q Consensus 344 ~~ff~Ls~~~~~L~~~ 359 (365)
+||++.++|+++|.+-
T Consensus 215 QWfikttaYAk~L~d~ 230 (876)
T KOG0435|consen 215 QWFIKTTAYAKRLLDG 230 (876)
T ss_pred HHHhhhhHHHHHHHHH
Confidence 9999999999998763
No 18
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=1.5e-35 Score=322.87 Aligned_cols=163 Identities=32% Similarity=0.507 Sum_probs=141.4
Q ss_pred HHhhhHHHHHhhcCCCCCccccCCCCCcCCCCCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccC
Q psy7914 152 LVCDGVYRRRRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMG 231 (365)
Q Consensus 152 ~~~~~ly~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g 231 (365)
.++...+.+|.. ...|.... ..++++++|+.||||+||.||+||+++++++|+++||+||+|++|++.+|
T Consensus 9 ~iE~~~~~~W~~---~~~f~~~~-------~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G 78 (861)
T TIGR00422 9 EVEKKWYKKWEK---SGFFKPDG-------NSNKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPG 78 (861)
T ss_pred HHHHHHHHHHHH---CCCcccCc-------ccCCCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCC
Confidence 355566666632 23443321 12345799999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHH----cCCCH------------HHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHH
Q psy7914 232 WDAFGLPAENAAHQ----HGIDP------------REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLD 295 (365)
Q Consensus 232 ~Dd~G~~I~~~A~~----~g~~~------------~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~ 295 (365)
+|+||+||+..+++ .|.++ ++|++++.+.|++++++||+++||++.+.|+|+.|.+.|+++|.+
T Consensus 79 ~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~ 158 (861)
T TIGR00422 79 TDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVR 158 (861)
T ss_pred cCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHH
Confidence 99999999998865 35554 577899999999999999999999999999999999999999999
Q ss_pred HHHCCCEEEeCcceeecCCCCcccccccc
Q psy7914 296 LYHAGLVYRKEATVNWDPIDNTVLADEQV 324 (365)
Q Consensus 296 L~~kG~Iy~~~~~v~yc~~~~t~Ls~~ev 324 (365)
|+++|+||++.+.++|||.|+|+||+.||
T Consensus 159 L~~~GlIy~~~~~v~wcp~~~t~lsd~Ev 187 (861)
T TIGR00422 159 LYEKGLIYRGEYLVNWDPKLNTAISDIEV 187 (861)
T ss_pred HHHCCCeeecCcccccCCCCCCcchHhHh
Confidence 99999999999999999999999999763
No 19
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7e-35 Score=317.78 Aligned_cols=140 Identities=34% Similarity=0.555 Sum_probs=130.6
Q ss_pred CceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHH----cCCCH-----------
Q psy7914 186 DNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ----HGIDP----------- 250 (365)
Q Consensus 186 ~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~----~g~~~----------- 250 (365)
++|+|+.||||+||.|||||+++++++|+++||.||+|++|++++|+|+||++++..+++ .|+++
T Consensus 36 ~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~ 115 (874)
T PRK05729 36 KPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEK 115 (874)
T ss_pred CCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHH
Confidence 359999999999999999999999999999999999999999999999999998776643 36654
Q ss_pred -HHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc
Q psy7914 251 -REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD 325 (365)
Q Consensus 251 -~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve 325 (365)
++|++++.+.|++++++||+++||+++++|+|+.|.+.|+++|.+|+++|+||++.++++|||.|+|+||+.||+
T Consensus 116 ~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~talsd~EV~ 191 (874)
T PRK05729 116 VWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYRGKRLVNWDPKLQTALSDLEVE 191 (874)
T ss_pred HHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEeecCcccccCCCCCCcchhhhcc
Confidence 456899999999999999999999999999999999999999999999999999999999999999999998885
No 20
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-33 Score=295.81 Aligned_cols=165 Identities=33% Similarity=0.546 Sum_probs=142.4
Q ss_pred HHHhhhHHHHHhhcCCCCCccccCCCCCcCCCCCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEecc
Q psy7914 151 KLVCDGVYRRRRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPM 230 (365)
Q Consensus 151 ~~~~~~ly~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~ 230 (365)
..++..+|..|.. .. |.+..... +.+++.|..||||+||.||||||.+.++.|+++||.||+||+|++.+
T Consensus 8 ~~iE~k~~~~W~~---~~-~f~~~~~~------~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~p 77 (877)
T COG0525 8 KEIEEKWYKKWEE---SG-YFKPDPNE------DKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPP 77 (877)
T ss_pred hhhhHHHHHHHHh---cC-CccCCCCC------CCCCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCC
Confidence 3466777887732 22 33321111 10359999999999999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHH----cCCC------------HHHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHH
Q psy7914 231 GWDAFGLPAENAAHQ----HGID------------PREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFL 294 (365)
Q Consensus 231 g~Dd~G~~I~~~A~~----~g~~------------~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~ 294 (365)
|+||||++++...++ .|++ +++|.+++.+.|+++|++||+++||+++++|+|+++.+.|+++|.
T Consensus 78 G~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv 157 (877)
T COG0525 78 GTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFV 157 (877)
T ss_pred CCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHH
Confidence 999999999988865 2544 267889999999999999999999999999999999999999999
Q ss_pred HHHHCCCEEEeCcceeecCCCCccccccccc
Q psy7914 295 DLYHAGLVYRKEATVNWDPIDNTVLADEQVD 325 (365)
Q Consensus 295 ~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve 325 (365)
+|+++|+||++.+.|.|||.|+|+||+.||+
T Consensus 158 ~Ly~~GlIYr~~~lVNWcP~~~TAiSd~EVe 188 (877)
T COG0525 158 RLYEKGLIYRGERLVNWCPKCRTAISDIEVE 188 (877)
T ss_pred HHHHCCceeecCCcccCCCccccchhhhhhc
Confidence 9999999999999999999999999998874
No 21
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.3e-33 Score=306.75 Aligned_cols=142 Identities=27% Similarity=0.448 Sum_probs=131.1
Q ss_pred CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHH-----cCCC---------
Q psy7914 184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ-----HGID--------- 249 (365)
Q Consensus 184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~-----~g~~--------- 249 (365)
++++|+|+.||||+||.|||||+++++++|+++||+||+|++|++.+|+|+||++++..+++ .|.+
T Consensus 46 ~~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f 125 (1052)
T PRK14900 46 TRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAF 125 (1052)
T ss_pred CCCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHH
Confidence 44679999999999999999999999999999999999999999999999999999887754 1333
Q ss_pred ---HHHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc
Q psy7914 250 ---PREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD 325 (365)
Q Consensus 250 ---~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve 325 (365)
+++|++++.+.|+++|++||+++||++++.|+|+.|.+.++++|.+|+++|+||++.++++|||.|+|+||+.||+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~ 204 (1052)
T PRK14900 126 LERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYREKKLINWCPDCRTALSDLEVE 204 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeccceeccCCCCCCCccHHHhc
Confidence 3457899999999999999999999999999999999999999999999999999999999999999999987763
No 22
>KOG0436|consensus
Probab=100.00 E-value=4.6e-33 Score=270.98 Aligned_cols=173 Identities=22% Similarity=0.330 Sum_probs=167.6
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ 266 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~ 266 (365)
++++++|..|||.++|+||+++.+++|+++|+.|.+|..|.+.+|+|+||++|+..|...|.+|.++|+.+...+++.++
T Consensus 40 ~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k 119 (578)
T KOG0436|consen 40 TFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWK 119 (578)
T ss_pred eeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCcc------CCCCccEEE
Q psy7914 267 GFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISW------RSGARVEKR 340 (365)
Q Consensus 267 ~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~------~~g~~~e~~ 340 (365)
.+||.++ .|++|++|.|...|++++..+.++|+||++++..|||.+|++|+++..|..+++|+ .+|+++.|+
T Consensus 120 ~~gi~yt--~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~vv~~ 197 (578)
T KOG0436|consen 120 DAGIAYT--KFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPVVWR 197 (578)
T ss_pred HhCcchh--heeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCCCceeeeccCCceeEe
Confidence 9999998 99999999999999999999999999999999999999999999999998777765 799999999
Q ss_pred EeeeeeEeCchhHHHHHhhhc
Q psy7914 341 RLSQWFIRTTRLANLVSLVDS 361 (365)
Q Consensus 341 ~~~~~ff~Ls~~~~~L~~~~~ 361 (365)
+|+||||+||+|+..|.++.-
T Consensus 198 kE~NY~FrLSkfqk~l~d~lr 218 (578)
T KOG0436|consen 198 KEDNYFFRLSKFQKPLEDHLR 218 (578)
T ss_pred cccceeeeHHhhhhHHHHHHh
Confidence 999999999999999998864
No 23
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=7.6e-33 Score=303.34 Aligned_cols=141 Identities=30% Similarity=0.501 Sum_probs=131.3
Q ss_pred CCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHH----cCCCH----------
Q psy7914 185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ----HGIDP---------- 250 (365)
Q Consensus 185 ~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~----~g~~~---------- 250 (365)
+++|+|+.|||||||.|||||+++++++|+++||.||+||+|++.+|+|+||+|++..+++ .|+++
T Consensus 87 ~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~ 166 (958)
T PLN02943 87 GDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTK 166 (958)
T ss_pred CCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHH
Confidence 4569999999999999999999999999999999999999999999999999999887654 35443
Q ss_pred --HHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc
Q psy7914 251 --REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD 325 (365)
Q Consensus 251 --~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve 325 (365)
++|++++.+.|++++++||+++||+++++|+|+.|.+.++++|.+|+++|+||++.++|+|||.|+|+||+.||+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Tals~~Eve 243 (958)
T PLN02943 167 RVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVE 243 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEecCceeccCCCCCCCcCHHHhh
Confidence 567789999999999999999999999999999999999999999999999999999999999999999988764
No 24
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=7.2e-33 Score=272.62 Aligned_cols=151 Identities=32% Similarity=0.568 Sum_probs=144.7
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHc-CCCH---------------
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH-GIDP--------------- 250 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~-g~~~--------------- 250 (365)
+++|..+||||||+|||||+|+++++|+++||+|++|++|.+++|+||||+||+.+|++. |+++
T Consensus 2 ~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~ 81 (338)
T cd00818 2 EFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNAK 81 (338)
T ss_pred CeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999886 7654
Q ss_pred -HHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCC
Q psy7914 251 -REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGI 329 (365)
Q Consensus 251 -~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~ 329 (365)
+++++++.+.|++++++|||++||+.++.|+++.|.+.++++|.+|+++|+||++.+.++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~------------------ 143 (338)
T cd00818 82 CREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW------------------ 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee------------------
Confidence 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccEEEEeeeeeEeCchhHHHHHhhhc
Q psy7914 330 SWRSGARVEKRRLSQWFIRTTRLANLVSLVDS 361 (365)
Q Consensus 330 c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~~ 361 (365)
++++++++||||+|++|+++|.+++.
T Consensus 144 ------~v~~~~~~qwf~~l~~~~~~l~~~~~ 169 (338)
T cd00818 144 ------PLIYRATPQWFIRVTKIKDRLLEAND 169 (338)
T ss_pred ------EEEEEecCeEEEEcHHHHHHHHHHHh
Confidence 88999999999999999999999875
No 25
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=9.9e-33 Score=269.08 Aligned_cols=149 Identities=56% Similarity=1.011 Sum_probs=144.5
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ 266 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~ 266 (365)
|++|+++||||||++||||+|+++++|+++||+|++|++|.+++|+||||+||+..|++.|.+|.++++++.+.++++++
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~ 80 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLK 80 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeee
Q psy7914 267 GFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWF 346 (365)
Q Consensus 267 ~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~f 346 (365)
+|||++||+.++.|+++.|.+.++++|.+|+++|+||++.+.++|| ++++|||
T Consensus 81 ~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~---------------------------~~~~~~f 133 (314)
T cd00812 81 RMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC---------------------------KLLDQWF 133 (314)
T ss_pred HhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeee---------------------------CccceEE
Confidence 9999999888999999999999999999999999999999999999 7789999
Q ss_pred EeC--chhHHHHHhhhcc
Q psy7914 347 IRT--TRLANLVSLVDSV 362 (365)
Q Consensus 347 f~L--s~~~~~L~~~~~~ 362 (365)
|+| ++|+++|.+++..
T Consensus 134 ~~l~~~~~~~~l~~~l~~ 151 (314)
T cd00812 134 LKYSETEWKEKLLKDLEK 151 (314)
T ss_pred EEcCcHHHHHHHHHHHHh
Confidence 999 9999999998853
No 26
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=9.1e-32 Score=295.87 Aligned_cols=142 Identities=27% Similarity=0.424 Sum_probs=135.9
Q ss_pred CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHc-CCC-------------
Q psy7914 184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH-GID------------- 249 (365)
Q Consensus 184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~-g~~------------- 249 (365)
++++|+++++||||||.||+||+++++++|+++||.||+||+|++.+|||+||+||+..+++. |++
T Consensus 39 ~~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f 118 (975)
T PRK06039 39 GGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKF 118 (975)
T ss_pred CCCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHH
Confidence 456799999999999999999999999999999999999999999999999999999999773 654
Q ss_pred ---HHHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc
Q psy7914 250 ---PREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD 325 (365)
Q Consensus 250 ---~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve 325 (365)
+++++.++.+.+++++++||+++||++.+.|+|+.|.+.++++|.+|+++|+||++.++++|||.|+|+||+.||+
T Consensus 119 ~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~ 197 (975)
T PRK06039 119 NEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLYKGYRVVPYCPRCETPLSNHEVA 197 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCCccHHHHh
Confidence 5788999999999999999999999999999999999999999999999999999999999999999999999997
No 27
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=99.97 E-value=1.4e-31 Score=291.91 Aligned_cols=149 Identities=33% Similarity=0.588 Sum_probs=137.8
Q ss_pred CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHc-CCC------H------
Q psy7914 184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH-GID------P------ 250 (365)
Q Consensus 184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~-g~~------~------ 250 (365)
++++++|+++||||||.||+||+++++++|+++||+||+|++|++.+|+|+||+||+..|++. |++ +
T Consensus 34 ~~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f 113 (861)
T TIGR00392 34 GKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEF 113 (861)
T ss_pred CCCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHHhCcccccccchhhHHHH
Confidence 446799999999999999999999999999999999999999999999999999999999765 543 3
Q ss_pred ----HHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCcccccccccc
Q psy7914 251 ----REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDE 326 (365)
Q Consensus 251 ----~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~ 326 (365)
++++.++.+.++++|++||+++||++.+.|++|.|.+.++++|.+|+++|+||++.++|+|||.|+|+||+.||++
T Consensus 114 ~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~l~~~gliyr~~~~v~w~p~~~T~La~~Ev~~ 193 (861)
T TIGR00392 114 REKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRGLKPVYWSPRCRTALAEAEVEY 193 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEeecceeeecCCCcCCcccHHHHhc
Confidence 4788999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCccCC
Q psy7914 327 QGISWRS 333 (365)
Q Consensus 327 ~~~c~~~ 333 (365)
+ .|..+
T Consensus 194 ~-~~~~~ 199 (861)
T TIGR00392 194 K-ENYKD 199 (861)
T ss_pred c-ccccc
Confidence 3 34333
No 28
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=1.2e-31 Score=292.95 Aligned_cols=145 Identities=22% Similarity=0.422 Sum_probs=137.0
Q ss_pred CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHc------CCCHH------
Q psy7914 184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH------GIDPR------ 251 (365)
Q Consensus 184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~------g~~~~------ 251 (365)
++++|+|+++|||+||.|||||+++++++|+++||+||+|++|++++|+|+||+||+..|++. ++++.
T Consensus 47 ~~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c 126 (912)
T PRK05743 47 GKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKC 126 (912)
T ss_pred CCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHH
Confidence 456799999999999999999999999999999999999999999999999999999999874 56665
Q ss_pred -HHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCC
Q psy7914 252 -EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQG 328 (365)
Q Consensus 252 -e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~ 328 (365)
++++++.+.++++|++||+++||++++.|+++.|.+.++++|.+|+++|+||++.++++|||.|+|+|++.||++..
T Consensus 127 ~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~ 204 (912)
T PRK05743 127 REYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHD 204 (912)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEecceeEecCCCcCCCchhhHhhccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999998643
No 29
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=99.97 E-value=3e-31 Score=290.91 Aligned_cols=145 Identities=24% Similarity=0.436 Sum_probs=134.8
Q ss_pred CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHc----CCC----------
Q psy7914 184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH----GID---------- 249 (365)
Q Consensus 184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~----g~~---------- 249 (365)
++++|+++++|||+||.||+||+++++++|+++||.||+||+|.+++|||+||+||+.++++. |..
T Consensus 52 ~~~~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~ 131 (961)
T PRK13804 52 GRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFR 131 (961)
T ss_pred CCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHH
Confidence 456799999999999999999999999999999999999999999999999999999988664 332
Q ss_pred --HHHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccC
Q psy7914 250 --PREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQ 327 (365)
Q Consensus 250 --~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~ 327 (365)
+++|+.++.+.+++++++||++.||++.+.|+++.|.+.++++|.+|+++|+||++.++|+|||.|+|+|++.||++.
T Consensus 132 ~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l~~kGliyr~~kpV~Wcp~~~TaLa~~Evey~ 211 (961)
T PRK13804 132 KECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLYRGSKPVMWSVVERTALAEAEIEYH 211 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeCCcceecCCCCCCCccchhcccc
Confidence 245788899999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred C
Q psy7914 328 G 328 (365)
Q Consensus 328 ~ 328 (365)
.
T Consensus 212 ~ 212 (961)
T PRK13804 212 D 212 (961)
T ss_pred c
Confidence 3
No 30
>PLN02381 valyl-tRNA synthetase
Probab=99.97 E-value=2.8e-31 Score=292.99 Aligned_cols=167 Identities=28% Similarity=0.447 Sum_probs=145.0
Q ss_pred HHHhhhHHHHHhhcCCCCCccccCCCCCcCCCCCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEecc
Q psy7914 151 KLVCDGVYRRRRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPM 230 (365)
Q Consensus 151 ~~~~~~ly~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~ 230 (365)
+.++...|.+|.. ...|.... ..++++|+|+.||||+||+|||||+++++++|+++||+||+|++|++.+
T Consensus 103 ~~iE~~w~~~W~~---~~~f~~~~-------~~~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~ 172 (1066)
T PLN02381 103 SAVEKSWYAWWEK---SGYFGADA-------KSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVP 172 (1066)
T ss_pred HHHHHHHHHHHHH---CCCccCCc-------cCCCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccC
Confidence 3456666666622 23343211 1245679999999999999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHH-----cCCCH------------HHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHH
Q psy7914 231 GWDAFGLPAENAAHQ-----HGIDP------------REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALF 293 (365)
Q Consensus 231 g~Dd~G~~I~~~A~~-----~g~~~------------~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f 293 (365)
|||+||+|++..+++ .|.++ ++|++++.+.|++++++||+++||++++.|+|+.|.+.|+++|
T Consensus 173 G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F 252 (1066)
T PLN02381 173 GVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAF 252 (1066)
T ss_pred CCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHH
Confidence 999999999999865 25443 4778999999999999999999999999999999999999999
Q ss_pred HHHHHCCCEEEeCcceeecCCCCccccccccccC
Q psy7914 294 LDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQ 327 (365)
Q Consensus 294 ~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~ 327 (365)
.+|+++|+||++.++|+|||.|+|+||+.||++.
T Consensus 253 ~~L~~~GlIyr~~~~VnWcP~~~TaLSd~EVey~ 286 (1066)
T PLN02381 253 VRLYKEGLIYRDIRLVNWDCTLRTAISDVEVDYI 286 (1066)
T ss_pred HHHHHCCCEEeccccccCCCCCCCCccHHHhhhh
Confidence 9999999999999999999999999999999753
No 31
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=99.97 E-value=5e-31 Score=277.29 Aligned_cols=145 Identities=39% Similarity=0.733 Sum_probs=126.5
Q ss_pred CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHc-CC--------------
Q psy7914 184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH-GI-------------- 248 (365)
Q Consensus 184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~-g~-------------- 248 (365)
++++|+|+.||||+||.||+||++++++.|+++||.||+|++|++.+|+|+||+||+..+++. |.
T Consensus 21 ~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~~~ 100 (601)
T PF00133_consen 21 NKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGREEF 100 (601)
T ss_dssp TSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHHHH
T ss_pred CCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccccc
Confidence 346799999999999999999999999999999999999999999999999999999998763 32
Q ss_pred --CHHHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCcccccccccc
Q psy7914 249 --DPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDE 326 (365)
Q Consensus 249 --~~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~ 326 (365)
.++++++++.+.+++++++||+++||++.+.|+++.|.+.++++|.+|+++|+||++.++++|||.|+|+||+.|+++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~~pv~w~p~~~t~lsd~Ev~~ 180 (601)
T PF00133_consen 101 REECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGKKPVNWCPSCQTALSDHEVEY 180 (601)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGEEE
T ss_pred hhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeCCCCCcCcccccchhhhhccc
Confidence 146788999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CC
Q psy7914 327 QG 328 (365)
Q Consensus 327 ~~ 328 (365)
..
T Consensus 181 ~~ 182 (601)
T PF00133_consen 181 KE 182 (601)
T ss_dssp EE
T ss_pred cc
Confidence 44
No 32
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.97 E-value=1.5e-30 Score=253.32 Aligned_cols=145 Identities=35% Similarity=0.636 Sum_probs=139.3
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCC-------------CHHHH
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGI-------------DPREW 253 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~-------------~~~e~ 253 (365)
+++|+++||||||+|||||+++++++|+++||+|++|++|.+++|+||||++|+.+|++.+. ++.++
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEF 80 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999887 88999
Q ss_pred HHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCC
Q psy7914 254 TVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRS 333 (365)
Q Consensus 254 ~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~ 333 (365)
++++.+.|+++|++|||++||+.++.|+++.|.+.++++|.+|+++|+||++.+.+
T Consensus 81 ~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v------------------------ 136 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV------------------------ 136 (312)
T ss_pred HHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee------------------------
Confidence 99999999999999999999999999999999999999999999999999999887
Q ss_pred CCccEEEEeeeeeEeCchhHHHHHhhhc
Q psy7914 334 GARVEKRRLSQWFIRTTRLANLVSLVDS 361 (365)
Q Consensus 334 g~~~e~~~~~~~ff~Ls~~~~~L~~~~~ 361 (365)
+.+.+|||++++|+++|.++..
T Consensus 137 ------~~~~~~f~~~~~l~~~~~~~~~ 158 (312)
T cd00668 137 ------RITEQWFFDMPKFKEKLLKALR 158 (312)
T ss_pred ------EeeeeEEEEcHHHHHHHHHHHh
Confidence 7889999999999999988764
No 33
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=99.97 E-value=1.4e-30 Score=287.31 Aligned_cols=144 Identities=28% Similarity=0.464 Sum_probs=133.3
Q ss_pred CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHH-----cCCCH--------
Q psy7914 184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ-----HGIDP-------- 250 (365)
Q Consensus 184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~-----~g~~~-------- 250 (365)
++++|+|+.|||||||.|||||+++++++|+++||+||+|++|++++|+|+||++++..+++ .|.++
T Consensus 58 ~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f 137 (995)
T PTZ00419 58 SGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEF 137 (995)
T ss_pred CCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHH
Confidence 45679999999999999999999999999999999999999999999999999999666433 34443
Q ss_pred ----HHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCcccccccccc
Q psy7914 251 ----REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDE 326 (365)
Q Consensus 251 ----~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~ 326 (365)
++|++++.+.|+++|++||+++||++++.|+|+.|.+.++++|.+|+++|+||++.++|+|||.|+|+||+.||++
T Consensus 138 ~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe~ 217 (995)
T PTZ00419 138 LKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVEF 217 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeecCCCCCCCCchhhccc
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred C
Q psy7914 327 Q 327 (365)
Q Consensus 327 ~ 327 (365)
.
T Consensus 218 ~ 218 (995)
T PTZ00419 218 E 218 (995)
T ss_pred c
Confidence 4
No 34
>PLN02843 isoleucyl-tRNA synthetase
Probab=99.97 E-value=3e-30 Score=283.14 Aligned_cols=142 Identities=29% Similarity=0.582 Sum_probs=132.5
Q ss_pred CceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHc-------CCCH-------H
Q psy7914 186 DNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH-------GIDP-------R 251 (365)
Q Consensus 186 ~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~-------g~~~-------~ 251 (365)
++|+|+++|||+||.|||||+++.+++|+++||+||+|++|.+++|+|+||+||+.++++. ++++ +
T Consensus 32 ~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~ 111 (974)
T PLN02843 32 ESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAA 111 (974)
T ss_pred CCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHH
Confidence 4699999999999999999999999999999999999999999999999999999988542 2344 4
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccC
Q psy7914 252 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQ 327 (365)
Q Consensus 252 e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~ 327 (365)
+|+.++.+.|++++++||++.||++.+.|+++.|...++++|.+|+++|+||++.++|+|||.|+|+||+.||++.
T Consensus 112 ~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~GlIyr~~kpV~Wcp~~~Talae~Evey~ 187 (974)
T PLN02843 112 KFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPSSRTALAEAELEYP 187 (974)
T ss_pred HHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCcchHhHhccc
Confidence 4578888999999999999999999999999999999999999999999999999999999999999999999865
No 35
>PLN02882 aminoacyl-tRNA ligase
Probab=99.97 E-value=3.4e-30 Score=285.95 Aligned_cols=142 Identities=26% Similarity=0.449 Sum_probs=133.1
Q ss_pred CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHH-cCCC-------------
Q psy7914 184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ-HGID------------- 249 (365)
Q Consensus 184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~-~g~~------------- 249 (365)
++++|++.++|||+||.||+||+++++++|+++||.||+||+|.+.+||||||+||+..+++ .|++
T Consensus 36 ~~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~lgi~~~~~i~~~g~~~f 115 (1159)
T PLN02882 36 GLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDVLKMGIDKY 115 (1159)
T ss_pred CCCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHHcCCCCccchhhcCHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999864 4543
Q ss_pred ---HHHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc
Q psy7914 250 ---PREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD 325 (365)
Q Consensus 250 ---~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve 325 (365)
+++++.++.+.+++++++||+++||++.+.|+++.|.+.++++|.+|+++|+||++.++++|||.|+|+||+.|++
T Consensus 116 ~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~~kGliyr~~~~v~wcp~~~TaLs~~E~~ 194 (1159)
T PLN02882 116 NEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYKGFKVMPYSTACKTPLSNFEAG 194 (1159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeEeecCCCCCCcchhhhh
Confidence 3567899999999999999999999999999999999999999999999999999999999999999999988874
No 36
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=99.97 E-value=6.9e-30 Score=279.91 Aligned_cols=142 Identities=27% Similarity=0.510 Sum_probs=133.8
Q ss_pred CCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHc---------------C--
Q psy7914 185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH---------------G-- 247 (365)
Q Consensus 185 ~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~---------------g-- 247 (365)
+++++|+.||||+||.||+||+++++++|+++||+||+|++|++.+|+|+||+||+..|++. +
T Consensus 24 ~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~~~~~~~~~~~~~i~ 103 (938)
T TIGR00395 24 REKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYTEVHAIP 103 (938)
T ss_pred CCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhhhhccccchhhccCC
Confidence 45799999999999999999999999999999999999999999999999999999888662 1
Q ss_pred -------CCHHHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCcccc
Q psy7914 248 -------IDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLA 320 (365)
Q Consensus 248 -------~~~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls 320 (365)
.+|++|++++...++++|++||+++||++.+.|+||.|.+.|++.|.+|+++|+||++.++++|||.|+|+|+
T Consensus 104 ~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~e~G~iy~g~~~v~wcp~~~t~ls 183 (938)
T TIGR00395 104 REELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLKELGLIVKGEHPVRYCPKDGNPVE 183 (938)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHHHHCCCEecCCeeEeecCCCCCCCc
Confidence 3467788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q psy7914 321 DEQVDE 326 (365)
Q Consensus 321 ~~eve~ 326 (365)
+.|++.
T Consensus 184 d~e~~~ 189 (938)
T TIGR00395 184 DHDLLS 189 (938)
T ss_pred hhHhcc
Confidence 999963
No 37
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=99.97 E-value=5.4e-30 Score=284.05 Aligned_cols=141 Identities=21% Similarity=0.384 Sum_probs=132.2
Q ss_pred CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHH-cCC--------------
Q psy7914 184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ-HGI-------------- 248 (365)
Q Consensus 184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~-~g~-------------- 248 (365)
++++|++..||||+||.||+||+++.+++|+++||+||+||+|.+.+|||+||+||+..+++ .|+
T Consensus 100 ~~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f 179 (1205)
T PTZ00427 100 NKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVY 179 (1205)
T ss_pred CCCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHH
Confidence 34568889999999999999999999999999999999999999999999999999999875 232
Q ss_pred --CHHHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCcccccccc
Q psy7914 249 --DPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQV 324 (365)
Q Consensus 249 --~~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~ev 324 (365)
.+++++.++.+.+++++++||++.||++++.|+++.|.+.++++|.+|+++|+||++.++++|||.|+|+||+.||
T Consensus 180 ~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~L~ekGlIYr~~k~V~wcp~c~TaLS~~EV 257 (1205)
T PTZ00427 180 NEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYKSFKVMPYSCKCNTPISNFEL 257 (1205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeccCCCCCCchhHHHh
Confidence 1367789999999999999999999999999999999999999999999999999999999999999999999999
No 38
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.7e-29 Score=270.59 Aligned_cols=145 Identities=32% Similarity=0.570 Sum_probs=135.0
Q ss_pred CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHH-cCCC-------------
Q psy7914 184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ-HGID------------- 249 (365)
Q Consensus 184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~-~g~~------------- 249 (365)
+++.|++.++|||+||.+|+|||.|.+++|++.||..|+||+|.+++||||||+||+.++++ .|..
T Consensus 47 g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr 126 (933)
T COG0060 47 GKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFR 126 (933)
T ss_pred CCCcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHH
Confidence 44578889999999999999999999999999999999999999999999999999999876 3421
Q ss_pred --HHHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccC
Q psy7914 250 --PREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQ 327 (365)
Q Consensus 250 --~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~ 327 (365)
+++++.++.+.+++++++||+..||++.|.|+++.|.+.+.++|.+|+++|+||++.++++||++|+|+||++|||++
T Consensus 127 ~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~ 206 (933)
T COG0060 127 EKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYG 206 (933)
T ss_pred HHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHHHHHHCCCeecCCeeeeecCCCCcchhhhhhccc
Confidence 356788999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred C
Q psy7914 328 G 328 (365)
Q Consensus 328 ~ 328 (365)
.
T Consensus 207 d 207 (933)
T COG0060 207 D 207 (933)
T ss_pred c
Confidence 4
No 39
>PLN02959 aminoacyl-tRNA ligase
Probab=99.96 E-value=1.7e-28 Score=271.60 Aligned_cols=142 Identities=25% Similarity=0.475 Sum_probs=127.4
Q ss_pred CCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHc-------CCC--------
Q psy7914 185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH-------GID-------- 249 (365)
Q Consensus 185 ~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~-------g~~-------- 249 (365)
+++|+++.||||+||.|||||+++++++|+++||+||+|++|++.+|+||||+||+..|++. |..
T Consensus 44 ~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~ 123 (1084)
T PLN02959 44 GEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEEDE 123 (1084)
T ss_pred CCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCCCcCCCCccHHHHHHHHHHHHHHcCCCcccccccc
Confidence 46799999999999999999999999999999999999999999999999999999998542 211
Q ss_pred -----------------------------------------------------------HHHHHHHHHHHHHHHHHhcCC
Q psy7914 250 -----------------------------------------------------------PREWTVGNIATMKSQLQGFGC 270 (365)
Q Consensus 250 -----------------------------------------------------------~~e~~~~~~~~i~~~l~~lgI 270 (365)
|..|++.+...++++|++||+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~ 203 (1084)
T PLN02959 124 DEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGL 203 (1084)
T ss_pred cccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHHhhcCCchhhhhhccCHHHHHHhccHHHHHHHHHhCc
Confidence 111333344778999999999
Q ss_pred CccCCCcccccC--hhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCcccccccccc
Q psy7914 271 KFNWESELATCD--PKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDE 326 (365)
Q Consensus 271 ~~D~~~~~~t~d--~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~ 326 (365)
+.||.+.+.|+| |.|...|++.|.+|+++|+||++.+++.|||.|+++|+|.|+++
T Consensus 204 ~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wcp~~~t~ladhe~~~ 261 (1084)
T PLN02959 204 GCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSPLDGQPCADHDRAS 261 (1084)
T ss_pred eEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeCCCCCCCchhhHHhc
Confidence 999999999999 89999999999999999999999999999999999999999974
No 40
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.95 E-value=8.8e-28 Score=248.21 Aligned_cols=186 Identities=17% Similarity=0.193 Sum_probs=156.1
Q ss_pred EECCCCchhhhccccceEEEecCccccccccccccCcceeEEEccchhhhhcCCcccccCCCCcccchhhHHHHHHhhhH
Q psy7914 78 IWLPEDTIEDVAKSQGQYITVKSSHILASKTKEKLTENVKHQIENKYKSIVSSDPMLRDRKKPVCGESLNQVLKLVCDGV 157 (365)
Q Consensus 78 v~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~~a~~~gf~n~~i~n~~~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l 157 (365)
..-.+|..|+..... .+.+.++++ |||+||++....+. +.+...+
T Consensus 52 ~~~~~p~~ia~~i~~----------~i~~v~~~~-~gfiN~~l~~~~~~------------------------~~~~~~~ 96 (507)
T PRK01611 52 KLKKNPREIAEEIVE----------AIEKVEIAG-PGFINFFLDPAALA------------------------ELVLAIL 96 (507)
T ss_pred HcCCCHHHHHHHHHh----------heeEEEEeC-CCEEEEEECHHHHH------------------------HHHHHHH
Confidence 345688888888821 167888999 99999999998888 4443333
Q ss_pred HHHHhhcCCCCCccccCCCCCcCCCCCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCc
Q psy7914 158 YRRRRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGL 237 (365)
Q Consensus 158 y~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~ 237 (365)
..++.||....++ +++++|++++|||||+|||||+|+++++|+++|++++.|++|.+++|+||+|.
T Consensus 97 -------~~~~~~g~~~~~~-------~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~ 162 (507)
T PRK01611 97 -------EAGERYGRSDIGK-------GKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGT 162 (507)
T ss_pred -------hchhhcCCCcCCC-------CCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccH
Confidence 3455677643222 23689999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEE-EeCcceeecCC
Q psy7914 238 PAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVY-RKEATVNWDPI 314 (365)
Q Consensus 238 ~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy-~~~~~v~yc~~ 314 (365)
||...+.+.+..++++++.+.+.|+++|++|||.+| .+.++++..+.+.+.+++++|.++|++| +.++.+|++..
T Consensus 163 qi~~~a~~~~~~~~~~~~~~~~~~~~~l~~LgI~~D--~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~ 238 (507)
T PRK01611 163 QIGMLIASLELLWRKAVDISLDEIKEDLDRLGVHFD--VWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRLT 238 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee--EEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEch
Confidence 999999888878888999999999999999999999 4455666666778999999999999999 99999988753
No 41
>KOG0432|consensus
Probab=99.93 E-value=2.7e-25 Score=232.14 Aligned_cols=186 Identities=27% Similarity=0.415 Sum_probs=152.8
Q ss_pred cccccCCCCcccchhhHHHHH-HhhhHHHHHhhcCCCCCccccCCCCCcCCCCCCCceEEEecCCCCCCCCchHHHHHHH
Q psy7914 132 PMLRDRKKPVCGESLNQVLKL-VCDGVYRRRRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYT 210 (365)
Q Consensus 132 p~~r~~~~~~~~~~~~~~~~~-~~~~ly~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v 210 (365)
++.+...+.+....+..|... ++...|.||.. +.|.+.+.+. .....|.+..||||+||.||||||.+.+
T Consensus 29 ~t~~ge~k~~~~~~~~~y~p~~vE~~wy~ww~k----~g~fkp~~~~-----~~~~~f~i~~PPPNVTG~LHiGHALt~a 99 (995)
T KOG0432|consen 29 STAPGEKKDLSGPLPAAYSPAYVESAWYKWWEK----QGFFKPEYGP-----NPGGVFVIPLPPPNVTGSLHIGHALTVA 99 (995)
T ss_pred CCCcchhhccCCcccccCCccchHHHHHHHHHH----cCCCCcccCC-----CCCCcceeecCCCCcccccchhHHHHHH
Confidence 344444444555555555443 77788989833 3444443331 1123578889999999999999999999
Q ss_pred HhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHH-----cCCC------------HHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914 211 ISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ-----HGID------------PREWTVGNIATMKSQLQGFGCKFN 273 (365)
Q Consensus 211 ~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~-----~g~~------------~~e~~~~~~~~i~~~l~~lgI~~D 273 (365)
+.|+++||.||.|+.|++++|+|++|..++...++ .|++ .++|.+++...|.++|++||.++|
T Consensus 100 iqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~D 179 (995)
T KOG0432|consen 100 IQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLD 179 (995)
T ss_pred HHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHhCccHHHHHHHhcCccc
Confidence 99999999999999999999999999877766654 2232 367889999999999999999999
Q ss_pred CCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCcccccccccc
Q psy7914 274 WESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDE 326 (365)
Q Consensus 274 ~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~ 326 (365)
|+++++|+|+.....|.+.|.+|+++|+||+..+.|.||+...+++||.||++
T Consensus 180 W~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~rlVNW~~~L~saiSdiEVe~ 232 (995)
T KOG0432|consen 180 WDREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDIEVES 232 (995)
T ss_pred ccHhhcccCHHHHHHHHHHHHHHHhcCceEecCceeeechhHHhhhhhheecc
Confidence 99999999999999999999999999999999999999999999999999974
No 42
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=9.8e-26 Score=234.15 Aligned_cols=191 Identities=19% Similarity=0.242 Sum_probs=154.9
Q ss_pred EEECCCCchhhhccccceEEEecCccccccccccccCcceeEEEccchhhhhcCCcccccCCCCcccchhhHHHHHHhhh
Q psy7914 77 SIWLPEDTIEDVAKSQGQYITVKSSHILASKTKEKLTENVKHQIENKYKSIVSSDPMLRDRKKPVCGESLNQVLKLVCDG 156 (365)
Q Consensus 77 ~v~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~~a~~~gf~n~~i~n~~~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~ 156 (365)
.+--++|..|+... ...+..+..+.+++++| ||||||++.+.++. +.+...
T Consensus 50 K~~~~~P~eiA~~i----~~~l~~~~~~~~veiaG-pgfINf~l~~~~~~------------------------~~~~~~ 100 (577)
T COG0018 50 KKLGKNPREIAEEI----AEKLDTDEIIEKVEIAG-PGFINFFLSPEFLA------------------------ELLLEI 100 (577)
T ss_pred hhcCCCHHHHHHHH----HHhccccCcEeEEEEcC-CCEEEEEECHHHHH------------------------HHHHHH
Confidence 44567899999999 77777766788999999 99999999999998 666555
Q ss_pred HHHHHhhcCC-CCCccccCCCCCcCCCCCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCC
Q psy7914 157 VYRRRRSISS-PSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAF 235 (365)
Q Consensus 157 ly~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~ 235 (365)
+ .. ++.||....++++ +++|++.||||||||||||+|++|+||+++|.|++.||+|.+++++||+
T Consensus 101 l-------~~~~~~~G~~~~~~~~-------kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~ 166 (577)
T COG0018 101 L-------EKGDDRYGRSKLGKGK-------KVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDW 166 (577)
T ss_pred H-------HhcccccCccccCCCC-------EEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcH
Confidence 5 22 4567777666554 7999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHH--------c-------------------------CCC-H-------------HH------HHHHHHHHHH
Q psy7914 236 GLPAENAAHQ--------H-------------------------GID-P-------------RE------WTVGNIATMK 262 (365)
Q Consensus 236 G~~I~~~A~~--------~-------------------------g~~-~-------------~e------~~~~~~~~i~ 262 (365)
|.||...+.. . +.+ . .. +++..+..|+
T Consensus 167 G~Q~~~l~~~~~~~~~e~~~~~~~~~~~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k 246 (577)
T COG0018 167 GTQIGMLALSYEKRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIK 246 (577)
T ss_pred HHHHHHHHHHHHHhccccccCCCCcchHHHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 9999877621 0 100 0 11 5677889999
Q ss_pred HHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeec
Q psy7914 263 SQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWD 312 (365)
Q Consensus 263 ~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc 312 (365)
++|.+|||.|| .+.+..+..+...+.++++.|.++|++|+.+++.+.+
T Consensus 247 ~~l~~l~V~fD--~~~~E~e~~~~~~~~~vv~~L~~~~~~~e~~GA~~vd 294 (577)
T COG0018 247 ETLDRLGVKFD--VYDSEGESFYNGKVEKVVEDLEEKGLLYEDDGALVVD 294 (577)
T ss_pred HHHHHhCcccc--eeeccchhhhcccHHHHHHHHHhcCCEeeeCCeEEEe
Confidence 99999999999 3334444445557899999999999999988887433
No 43
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.92 E-value=2.6e-25 Score=205.48 Aligned_cols=131 Identities=19% Similarity=0.194 Sum_probs=116.7
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ 266 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~ 266 (365)
+++|+++||||||+|||||+|+++++|+++|++++.|++|.+++|+||+|.||...|.+.+. +.++++.+.+.++++++
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~-~~~~~~~~~~~~~~~~~ 79 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEK-WRKLVEESIKADLETYG 79 (212)
T ss_pred CeEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999976643 78999999999999999
Q ss_pred hcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCcccccc
Q psy7914 267 GFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADE 322 (365)
Q Consensus 267 ~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~ 322 (365)
+|||.+| .+.++++. ...+.++++.|.++|++|+.++.+|+|+.+...+++.
T Consensus 80 ~L~i~~d--~~~~es~~--~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~~~~~~d~ 131 (212)
T cd00671 80 RLDVRFD--VWFGESSY--LGLMGKVVELLEELGLLYEEDGALWLDLTEFGDDKDR 131 (212)
T ss_pred HhCCcCc--eecchhhh--hhHHHHHHHHHHHCCCEEEeCCcEEEechhhCCCCCe
Confidence 9999999 44455543 7789999999999999999999999998766544443
No 44
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=99.91 E-value=8.8e-25 Score=238.87 Aligned_cols=126 Identities=34% Similarity=0.575 Sum_probs=119.1
Q ss_pred CchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHc---------------CC---------CHHHHHHH
Q psy7914 201 LHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH---------------GI---------DPREWTVG 256 (365)
Q Consensus 201 LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~---------------g~---------~~~e~~~~ 256 (365)
||+||+++++++|+++||+||+|++|++.+|+|+||+||+..|++. |+ +|++|+++
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~ 80 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY 80 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 7999999999999999999999999999999999999999987542 33 45788999
Q ss_pred HHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCcccccccccc
Q psy7914 257 NIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDE 326 (365)
Q Consensus 257 ~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~ 326 (365)
+.+.+++++++||+++||++.+.|+||.|.+.+++.|.+|+++|+||++.+++.|||.|+|+|++.|++.
T Consensus 81 ~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~ 150 (897)
T PRK12300 81 FSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLD 150 (897)
T ss_pred hHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999964
No 45
>KOG1247|consensus
Probab=99.91 E-value=7.4e-25 Score=213.50 Aligned_cols=182 Identities=21% Similarity=0.260 Sum_probs=170.2
Q ss_pred cCCCCCCCceEEEecCCCCCCCCchHHHHH-HHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHH
Q psy7914 179 LEGKRREDNFYVLSMFPYPSGSLHMGHVRV-YTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGN 257 (365)
Q Consensus 179 ~~~~~~~~~~~I~~~~PnpnG~LHiGHar~-~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~ 257 (365)
..|..++++++|+.+.||+|..+|+|++-+ ...+|++|||.+.+|+...+++|+|+.|..++..|.+.|++|+++++++
T Consensus 7 ilp~~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~elcdKy 86 (567)
T KOG1247|consen 7 ILPAPNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQELCDKY 86 (567)
T ss_pred cccCCCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHccCCHHHHHHhc
Confidence 345567788999999999999999999998 5569999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc------------
Q psy7914 258 IATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD------------ 325 (365)
Q Consensus 258 ~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve------------ 325 (365)
...++..++|++|.|| .+-+|+.+...++++.+|.+|+++|++-+....+.||..|+++|++++|+
T Consensus 87 h~ihk~vy~Wf~IdfD--~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~cp~C~yd~AR 164 (567)
T KOG1247|consen 87 HGIHKVVYDWFKIDFD--EFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGKCPFCGYDDAR 164 (567)
T ss_pred chhHHHHHHhhccccc--ccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhhhccCCCCCCcccc
Confidence 9999999999999888 67788888899999999999999999999999999999999999999986
Q ss_pred ----------------cCCCccCCCCccEEEEeeeeeEeCchhHHHHHhhhcc
Q psy7914 326 ----------------EQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDSV 362 (365)
Q Consensus 326 ----------------~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~~~ 362 (365)
.+++|.+|...++.+...|+||.|++++++|.+|.-.
T Consensus 165 GDqcd~cG~l~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~ 217 (567)
T KOG1247|consen 165 GDQCDKCGKLVNAAELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLRR 217 (567)
T ss_pred chhhhhhhhhcCHHHhcCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHHh
Confidence 2468999999999999999999999999999999754
No 46
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.89 E-value=6.8e-23 Score=214.02 Aligned_cols=186 Identities=12% Similarity=0.104 Sum_probs=143.3
Q ss_pred ECCCCchhhhccccceEEEecCccccccccccccCcceeEEEccchhhhhcCCcccccCCCCcccchhhHHHHH-HhhhH
Q psy7914 79 WLPEDTIEDVAKSQGQYITVKSSHILASKTKEKLTENVKHQIENKYKSIVSSDPMLRDRKKPVCGESLNQVLKL-VCDGV 157 (365)
Q Consensus 79 ~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~~a~~~gf~n~~i~n~~~~~~~~~p~~r~~~~~~~~~~~~~~~~~-~~~~l 157 (365)
.-++|..|+... .-.+..+ .+.+.++++ | ||||++.+..+. .. ....+
T Consensus 50 ~~~~P~~iA~~i----~~~l~~~-~i~~ve~~g-~-fiN~~l~~~~~~------------------------~~~~~~~~ 98 (562)
T PRK12451 50 YKKAPAIIAKEV----AEKLSDP-FFTKVEAVG-P-YVNVFFNRETVS------------------------DAVLKTIL 98 (562)
T ss_pred cCCCHHHHHHHH----HHhcccc-ccceeEeeC-C-EEEEEECHHHHH------------------------HHHHHHHH
Confidence 457899998888 5555433 477889998 5 999999999986 33 22333
Q ss_pred HHHHhhcCCCCCccccCCCCCcCCCCCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCc
Q psy7914 158 YRRRRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGL 237 (365)
Q Consensus 158 y~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~ 237 (365)
..++.||....++ +++++|.+.||||||||||||+|++++||+++|+++..||+|.+++|+||+|.
T Consensus 99 -------~~~~~~g~~~~~~-------~~~v~vE~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G~ 164 (562)
T PRK12451 99 -------AEKEEYGQNHFGC-------EKTVVIDYSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWGT 164 (562)
T ss_pred -------hhHhhcCCCccCC-------CCEEEEEecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCchH
Confidence 3345577543222 23689999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHH---cCCC-------------------------------------------H------HHHHHHHHHHHHHHH
Q psy7914 238 PAENAAHQ---HGID-------------------------------------------P------REWTVGNIATMKSQL 265 (365)
Q Consensus 238 ~I~~~A~~---~g~~-------------------------------------------~------~e~~~~~~~~i~~~l 265 (365)
|+...+.. .|.. + +.+++..++.|+++|
T Consensus 165 Q~~~l~~~~~~~~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~ 244 (562)
T PRK12451 165 QFGKLITAYKKWGNEAVVKEDPIRELFKLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIY 244 (562)
T ss_pred HHHHHHHHHHHhCCccccccCchHHHHHHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99877722 1100 0 122577789999999
Q ss_pred HhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecC
Q psy7914 266 QGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDP 313 (365)
Q Consensus 266 ~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~ 313 (365)
++|||.|||+. .+..|...+.+++++|.++|++|+.+++.|.+.
T Consensus 245 ~~l~V~fD~~~----~es~~~~~~~~v~~~L~~~g~~~e~dGa~~~~~ 288 (562)
T PRK12451 245 ELLGVEFTNFQ----GEAFYNDLMEDFIGILEEHDLLEESEGALVVNL 288 (562)
T ss_pred HHcCCCceeec----chHhhhhhHHHHHHHHHHCCCEEecCCeEEEEe
Confidence 99999999332 223455667999999999999999999998664
No 47
>PLN02286 arginine-tRNA ligase
Probab=99.89 E-value=5.9e-23 Score=214.90 Aligned_cols=184 Identities=15% Similarity=0.104 Sum_probs=142.4
Q ss_pred CCCchhhhccccceEEEecCccccccccccccCcceeEEEccchhhhhcCCcccccCCCCcccchhhHHHHHHhhhHHHH
Q psy7914 81 PEDTIEDVAKSQGQYITVKSSHILASKTKEKLTENVKHQIENKYKSIVSSDPMLRDRKKPVCGESLNQVLKLVCDGVYRR 160 (365)
Q Consensus 81 ~~p~~~~~~~~~g~f~~l~~~h~l~~~~~a~~~gf~n~~i~n~~~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~ly~~ 160 (365)
++|..|+... .-.+..+..+.+.++++ ||||||+|.+..+. +.+...+
T Consensus 56 k~P~~iA~~i----~~~l~~~~~i~~v~vag-pGfiNf~l~~~~l~------------------------~~l~~~~--- 103 (576)
T PLN02286 56 KNPRAVAQAI----VKNLPASEMIESTSVAG-PGFVNVRLSASWLA------------------------KRIERML--- 103 (576)
T ss_pred CCHHHHHHHH----HHhCccccceeeEEEcC-CCeEEEEECHHHHH------------------------HHHHHHH---
Confidence 6799999888 55555544478899999 99999999999988 5444433
Q ss_pred HhhcCCCCCccccCCCCCcCCCCCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHH
Q psy7914 161 RRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAE 240 (365)
Q Consensus 161 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~ 240 (365)
..+..||... .++++++|++.||||||||||||+|++++||+|+|+++..||+|.+++|+||+|.||.
T Consensus 104 ----~~~~~~g~~~--------~~~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~Qi~ 171 (576)
T PLN02286 104 ----VDGIDTWAPT--------LPVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFG 171 (576)
T ss_pred ----HcCcccCCCC--------CCCceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHHHHH
Confidence 2334454211 1124799999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHc----CC----C---------------------H------------------------HHHHHHHHHHHHHHHHh
Q psy7914 241 NAAHQH----GI----D---------------------P------------------------REWTVGNIATMKSQLQG 267 (365)
Q Consensus 241 ~~A~~~----g~----~---------------------~------------------------~e~~~~~~~~i~~~l~~ 267 (365)
..+... +. . + +.+++.....|++++++
T Consensus 172 ~l~~~~~~~~~~~~~~~~~~i~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~ 251 (576)
T PLN02286 172 MLIEHLFEKFPNWESVSDQAIGDLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQR 251 (576)
T ss_pred HHHHHHHHhcCcccccCcccHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777321 10 0 0 12346667889999999
Q ss_pred cCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecC
Q psy7914 268 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDP 313 (365)
Q Consensus 268 lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~ 313 (365)
|||.||. .-+..|...+.++++.|.++|++|+.++..|.+-
T Consensus 252 l~V~fd~-----~ges~y~~~~~~vi~~L~~~g~~~e~dGa~~v~l 292 (576)
T PLN02286 252 LRVELEE-----KGESFYNPYIPGVIEELESKGLVVESDGARVIFV 292 (576)
T ss_pred hCCeeee-----cCchhhhhhHHHHHHHHHHCCCEEeeCCceEeec
Confidence 9999982 1233455667999999999999999999998643
No 48
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.88 E-value=1.6e-22 Score=211.58 Aligned_cols=188 Identities=18% Similarity=0.237 Sum_probs=145.0
Q ss_pred EECCCCchhhhccccceEEEecCccccccccccccCcceeEEEccchhhhhcCCcccccCCCCcccchhhHHHHHHhhhH
Q psy7914 78 IWLPEDTIEDVAKSQGQYITVKSSHILASKTKEKLTENVKHQIENKYKSIVSSDPMLRDRKKPVCGESLNQVLKLVCDGV 157 (365)
Q Consensus 78 v~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~~a~~~gf~n~~i~n~~~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l 157 (365)
..-++|..|+... ...+..+..+.+.++++ | ||||++.+..+. ..+....+
T Consensus 48 ~~~~~P~~iA~~i----~~~l~~~~~i~~ve~~g-p-fiN~~l~~~~~~-----------------------~~~~~~~~ 98 (566)
T TIGR00456 48 VLKKNPRAIAEEI----VLKLKTGEIIEKVEAAG-P-FINFFLSPQKLL-----------------------ERLIQKIL 98 (566)
T ss_pred HcCCCHHHHHHHH----HHhCCCcCcEeEEEEeC-C-EEEEEEcHHHHH-----------------------HHHHHHHH
Confidence 4557899999888 66666555578899999 6 999999986655 02233333
Q ss_pred HHHHhhcCCCCCccccCCCCCcCCCCCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCc
Q psy7914 158 YRRRRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGL 237 (365)
Q Consensus 158 y~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~ 237 (365)
..++.||....+ +++++|++++|||+|||||||+|+++++|+++|++++.||+|.+++++||+|.
T Consensus 99 -------~~~~~~g~~~~~--------~~~v~ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G~ 163 (566)
T TIGR00456 99 -------TQKEDYGSKKLK--------NKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWGR 163 (566)
T ss_pred -------hcccccCCCCCC--------CCeEEEEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchHH
Confidence 345668754332 23689999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHH---cC--------CCH-------------------------------------------HHHHHHHHHHHHH
Q psy7914 238 PAENAAHQ---HG--------IDP-------------------------------------------REWTVGNIATMKS 263 (365)
Q Consensus 238 ~I~~~A~~---~g--------~~~-------------------------------------------~e~~~~~~~~i~~ 263 (365)
|+...+.. .+ ..| +.+++..++.|++
T Consensus 164 Q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~ 243 (566)
T TIGR00456 164 QFGLLALGVEKFGNEKLNEAVKKPDHGLEGFYVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKE 243 (566)
T ss_pred HHHHHHHHHHHhCCccccCcccCChHHHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99877722 00 000 1235778899999
Q ss_pred HHHhcCCCcc-CCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecC
Q psy7914 264 QLQGFGCKFN-WESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDP 313 (365)
Q Consensus 264 ~l~~lgI~~D-~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~ 313 (365)
+|++|||.|| |+.+ .+..+...+..++++|.++|++|++ +++|.+.
T Consensus 244 ~~~~l~V~fD~~~~E---~e~~~~~~~~~v~~~L~~~g~~~~~-Ga~~~~~ 290 (566)
T TIGR00456 244 TLARLNIHFDSFVWE---GESVKNGMVPKVLEDLKEKGLVVED-GALWLDL 290 (566)
T ss_pred HHHHcCCceeeeecc---ccccccccHHHHHHHHHHCCCEEEc-CCEEEEc
Confidence 9999999999 5433 3333455678999999999999988 8888764
No 49
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.88 E-value=4.8e-22 Score=203.40 Aligned_cols=125 Identities=19% Similarity=0.193 Sum_probs=113.3
Q ss_pred eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 267 (365)
Q Consensus 188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~ 267 (365)
+-+....|+|+|++||||+|+++.+|+++||+|+.|++|.+++|+||+|.+|...|++.|.+|.++++.+.+.|++++++
T Consensus 24 v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~~~~ 103 (463)
T PRK00260 24 VKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDMDA 103 (463)
T ss_pred ceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 44555688899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC-CccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCC
Q psy7914 268 FGC-KFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDN 316 (365)
Q Consensus 268 lgI-~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~ 316 (365)
||| ..||+ .+++ .|...+.+++++|.++|++|+++++|+||++.-
T Consensus 104 Lgi~~~d~~--~r~t--~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~ 149 (463)
T PRK00260 104 LNVLPPDIE--PRAT--EHIPEIIELIERLIDKGHAYEADGDVYFDVRKF 149 (463)
T ss_pred cCCCCCCcc--cccc--ccHHHHHHHHHHHHHCCCEEEecCeEEEecccc
Confidence 999 45643 2333 478889999999999999999999999999864
No 50
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.87 E-value=8.1e-22 Score=201.67 Aligned_cols=126 Identities=17% Similarity=0.106 Sum_probs=114.4
Q ss_pred eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 267 (365)
Q Consensus 188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~ 267 (365)
+-+....|+|+|++||||+|++|.+|+++||||++||+|.++.|+||+|.+|...|.+.|++|.++++.+.+.|++++++
T Consensus 22 v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl~~ 101 (465)
T TIGR00435 22 VKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKA 101 (465)
T ss_pred ceEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 44555567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeC-cceeecCCCC
Q psy7914 268 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE-ATVNWDPIDN 316 (365)
Q Consensus 268 lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~-~~v~yc~~~~ 316 (365)
|||.+|.. +.+++ .|...+.+++++|.++|++|+.+ +.+|||+.|.
T Consensus 102 LgI~~d~~-~~raT--~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~ 148 (465)
T TIGR00435 102 LNVLPPDL-EPRAT--EHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKF 148 (465)
T ss_pred hCCCCCcC-Ccccc--ccHHHHHHHHHHHHHCCCEEEecCCcEEEecccc
Confidence 99999822 12232 68899999999999999999999 9999999885
No 51
>KOG0433|consensus
Probab=99.87 E-value=1.7e-21 Score=200.62 Aligned_cols=133 Identities=30% Similarity=0.552 Sum_probs=123.3
Q ss_pred CCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHH-HHHHH------cCCCH-------HHHHHHHHHHHH
Q psy7914 197 PSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAE-NAAHQ------HGIDP-------REWTVGNIATMK 262 (365)
Q Consensus 197 pnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~-~~A~~------~g~~~-------~e~~~~~~~~i~ 262 (365)
+||.||+|||++.|+.|++.|++.++|..|++++|+||||+||+ .+|.+ ..++| +.+|++.++.++
T Consensus 66 anG~lhlghalnkILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~~~~~s~leiR~~Ar~fA~~AIk~Q~ 145 (937)
T KOG0433|consen 66 ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESEGSRTPLEIRAKARIFADEAIKKQM 145 (937)
T ss_pred cCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 56643 23455 346788899999
Q ss_pred HHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCC
Q psy7914 263 SQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGI 329 (365)
Q Consensus 263 ~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~ 329 (365)
+.++++||..||...|.|++|.|.....++|.+|+++|+||++..+|||+|+..|+|+++|+|||..
T Consensus 146 e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~KPVyWSpSSRTALAEaELEYn~n 212 (937)
T KOG0433|consen 146 EAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSSRTALAESELEYNDN 212 (937)
T ss_pred HHHHHheeeccCCCceeecChHHHHHHHHHHHHHHhccceeccCCcceecCcchhhhhhhhccCCcC
Confidence 9999999999999999999999999999999999999999999999999999999999999998763
No 52
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.86 E-value=3.1e-21 Score=192.01 Aligned_cols=127 Identities=17% Similarity=0.196 Sum_probs=115.4
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ 266 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~ 266 (365)
++-+....|+|.+++||||+|++|.+|+++||||+.|++|.+++|+||+|++|...|++.|++|+++++.+.+.+.++++
T Consensus 9 ~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~ 88 (384)
T PRK12418 9 TATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDME 88 (384)
T ss_pred eeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34555667778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCC-CccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCc----ceeecCCCCc
Q psy7914 267 GFGC-KFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEA----TVNWDPIDNT 317 (365)
Q Consensus 267 ~lgI-~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~----~v~yc~~~~t 317 (365)
+||| .+| .+.++++ +.+.+++++++|.++|++|++.+ .|||+++.-.
T Consensus 89 ~Lni~~~~--~~~raTe--~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~ 140 (384)
T PRK12418 89 ALRVLPPR--DYVGAVE--SIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDATP 140 (384)
T ss_pred HhCCCCCC--ccccCCC--CHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCchh
Confidence 9997 566 5666776 48999999999999999999999 8999987643
No 53
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.85 E-value=4.8e-21 Score=191.72 Aligned_cols=125 Identities=18% Similarity=0.206 Sum_probs=112.1
Q ss_pred eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 267 (365)
Q Consensus 188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~ 267 (365)
+-+....|+|.+++||||+|++|.+|+++||+|+.|++|.+++|+||||++|...|++.|++|+++++.+.+.+++++++
T Consensus 37 v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~~ 116 (411)
T TIGR03447 37 AGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEA 116 (411)
T ss_pred ceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 44444466666999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC-ccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCc----ceeecCCCC
Q psy7914 268 FGCK-FNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEA----TVNWDPIDN 316 (365)
Q Consensus 268 lgI~-~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~----~v~yc~~~~ 316 (365)
|||. +| .+.++++. .+.+.+++++|.++|++|+.++ .|||+++.-
T Consensus 117 Lni~~~d--~~~RaTe~--i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~ 166 (411)
T TIGR03447 117 LRVLPPR--DYIGAVES--IDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEAT 166 (411)
T ss_pred cCCCCCC--cccCCCCC--HHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccch
Confidence 9986 55 55666664 7899999999999999999987 799998753
No 54
>PLN02946 cysteine-tRNA ligase
Probab=99.85 E-value=5.7e-21 Score=197.41 Aligned_cols=125 Identities=18% Similarity=0.168 Sum_probs=118.3
Q ss_pred eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 267 (365)
Q Consensus 188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~ 267 (365)
+-+...-|+|.+++||||+|++|..|+++|||++.||+|.++.|+||+|++|...|.+.|++|.++++.+.+.|.+++++
T Consensus 81 v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d~~~ 160 (557)
T PLN02946 81 VGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSDMAY 160 (557)
T ss_pred eeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 44555589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCC
Q psy7914 268 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPID 315 (365)
Q Consensus 268 lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~ 315 (365)
|||. + .++.|....|...+.+++++|+++|++|+.++.||||++.
T Consensus 161 LnI~-~--p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~ 205 (557)
T PLN02946 161 LHCL-P--PSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDK 205 (557)
T ss_pred CCCC-C--CCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCc
Confidence 9998 4 5677888899999999999999999999999999999985
No 55
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.83 E-value=4.9e-20 Score=188.48 Aligned_cols=126 Identities=21% Similarity=0.158 Sum_probs=116.0
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEecc----------CCCCCCchHHHHHHHcCCCHHHHHHH
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPM----------GWDAFGLPAENAAHQHGIDPREWTVG 256 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~----------g~Dd~G~~I~~~A~~~g~~~~e~~~~ 256 (365)
++-+...-|+|++++||||+|++|..|+++||+++.|++|.+++ |+|+||.+|...|++.|++|.++++.
T Consensus 23 ~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a~~ 102 (490)
T PRK14536 23 HVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAAH 102 (490)
T ss_pred ceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHHHH
Confidence 45666679999999999999999999999999999999999997 77777999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCC
Q psy7914 257 NIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPID 315 (365)
Q Consensus 257 ~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~ 315 (365)
+.+.+.+++++|||.++ .++ +..+.|...+.+++++|.++|++|+..+.||||+..
T Consensus 103 ~~~~f~~d~~~Lni~~~--~~~-~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~ 158 (490)
T PRK14536 103 YTAAFFRDTARLNIERP--SIV-CNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRT 158 (490)
T ss_pred HHHHHHHHHHHcCCCCC--cee-cCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCc
Confidence 99999999999999986 333 566889999999999999999999999999999964
No 56
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.83 E-value=6.1e-20 Score=191.55 Aligned_cols=127 Identities=17% Similarity=0.137 Sum_probs=117.9
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ 266 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~ 266 (365)
++-+...-|+|.+++||||+|++|..|+++|||++.|++|.++.|+||+|.+|...|++.|+++.++++.+.+.+.++++
T Consensus 248 ~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d~~ 327 (699)
T PRK14535 248 NVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHEDAD 327 (699)
T ss_pred ceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45556669999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEe-CcceeecCCCC
Q psy7914 267 GFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRK-EATVNWDPIDN 316 (365)
Q Consensus 267 ~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~-~~~v~yc~~~~ 316 (365)
+|||..+ . +.+....|...+.+++++|.++|++|++ .+.||||+++-
T Consensus 328 ~LnI~~p--~-~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f 375 (699)
T PRK14535 328 ALGVLRP--D-IEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREF 375 (699)
T ss_pred HcCCCCC--c-EeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecccc
Confidence 9999987 3 3567779999999999999999999987 56899999864
No 57
>KOG0434|consensus
Probab=99.82 E-value=3.5e-20 Score=189.62 Aligned_cols=143 Identities=24% Similarity=0.434 Sum_probs=131.5
Q ss_pred CCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHH-cCCC------------
Q psy7914 183 RREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ-HGID------------ 249 (365)
Q Consensus 183 ~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~-~g~~------------ 249 (365)
++++++...++||.+||-+|-||+...++.|++.||.-+.||.|.+.+|||+||+|++....+ .|++
T Consensus 35 k~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGWD~HGlPVE~eIDKkLgI~g~~dV~kmGI~k 114 (1070)
T KOG0434|consen 35 KGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGWDTHGLPVEYEIDKKLGITGRDDVMKMGIDK 114 (1070)
T ss_pred CCCCceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeeecccccCCCccceeechhcCCCCHHHHHHHhHHh
Confidence 456778888999999999999999999999999999999999999999999999999987754 4543
Q ss_pred ----HHHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc
Q psy7914 250 ----PREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD 325 (365)
Q Consensus 250 ----~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve 325 (365)
++.++-.+..++++...+||-+.||++-|.|+.|.+.+.|+++|++|+++|++|++-+-+.|+..|.|+||+-|..
T Consensus 115 YN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvFkeL~~kglVYRG~kVMP~STac~TPLSNFEa~ 194 (1070)
T KOG0434|consen 115 YNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKELHEKGLVYRGFKVMPYSTACTTPLSNFEAQ 194 (1070)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHHHHHHhcCceecceeeeccccccCCcccchhcc
Confidence 3556788899999999999999999999999999999999999999999999999999999999999999998764
No 58
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.80 E-value=1.5e-19 Score=179.12 Aligned_cols=126 Identities=25% Similarity=0.301 Sum_probs=97.8
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHH--------c------------
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ--------H------------ 246 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~--------~------------ 246 (365)
+++|+++||||||||||||+|++++||+++|+++..||+|.++++++|+|.||...+.. .
T Consensus 21 kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 100 (354)
T PF00750_consen 21 KVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIKHLEDL 100 (354)
T ss_dssp EEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHHHHHHH
T ss_pred EEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhcccccccchhhh
Confidence 79999999999999999999999999999999999999999999999999999877721 0
Q ss_pred -----------CC------C------------------HHHHH-HHHHHHHHHHHHhcCCCcc-CCCcccccChhhHHHH
Q psy7914 247 -----------GI------D------------------PREWT-VGNIATMKSQLQGFGCKFN-WESELATCDPKYYKWT 289 (365)
Q Consensus 247 -----------g~------~------------------~~e~~-~~~~~~i~~~l~~lgI~~D-~~~~~~t~d~~~~~~v 289 (365)
.. . ..++. ..+.+.++++|++|++.+| |+.+ .+..+...+
T Consensus 101 Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fDv~~~E---~Es~~~~~v 177 (354)
T PF00750_consen 101 YVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFDVWFDE---SESFYSGKV 177 (354)
T ss_dssp HHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---SEEEEH---CHHHHTTHH
T ss_pred hhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccc---chhhhhhHH
Confidence 00 0 01123 3378899999999999999 5433 444566778
Q ss_pred HHHHHHHHHCCCEEEeCcceeecCCC
Q psy7914 290 QALFLDLYHAGLVYRKEATVNWDPID 315 (365)
Q Consensus 290 ~~~f~~L~~kG~Iy~~~~~v~yc~~~ 315 (365)
.+++++|.++|++|+.+++.|.....
T Consensus 178 ~~vl~~L~e~g~~~~~dGa~~i~~~~ 203 (354)
T PF00750_consen 178 DEVLERLKEKGLLYESDGALWIDLTK 203 (354)
T ss_dssp HHHHHHHHCTTTEEEETTEEEEEGCC
T ss_pred HHHHHHHHhCCcEEecCCcEEEechh
Confidence 99999999999999999999987653
No 59
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.80 E-value=6.6e-19 Score=179.54 Aligned_cols=127 Identities=17% Similarity=0.142 Sum_probs=114.7
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEe---------ccCC-CCCCchHHHHHHHcCCCHHHHHHH
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQ---------PMGW-DAFGLPAENAAHQHGIDPREWTVG 256 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~---------~~g~-Dd~G~~I~~~A~~~g~~~~e~~~~ 256 (365)
++-+...-|+|..++||||+|++|..|+++|||++.|++|.+ .+|+ |+||.+|...|++.|+++.++++.
T Consensus 21 ~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~~ 100 (481)
T PRK14534 21 DVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISRF 100 (481)
T ss_pred ceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHHH
Confidence 456666799999999999999999999999999999999999 5666 334788999999999999999999
Q ss_pred HHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCC
Q psy7914 257 NIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDN 316 (365)
Q Consensus 257 ~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~ 316 (365)
+.+.+.+++++|||.++ .++.+ .+.|...+.+++++|.++|++|+..+.||||+.+-
T Consensus 101 ~~~~f~~d~~~Lni~~~--~~~p~-atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~~ 157 (481)
T PRK14534 101 FTEAFFDDCKKLNIVYP--DKVLV-ASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCF 157 (481)
T ss_pred HHHHHHHHHHHcCCCCC--ceecC-ccchHHHHHHHHHHHHHCCCEEEECCeEEEecccc
Confidence 99999999999999988 44544 57899999999999999999999999999999973
No 60
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.80 E-value=4.1e-19 Score=187.82 Aligned_cols=126 Identities=16% Similarity=0.184 Sum_probs=114.7
Q ss_pred eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHH-HCCCcEEeccCCCCCCchHHHHHHHcCCC-HHHHHHHHHHHHHHHH
Q psy7914 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYA-MNGKNVFQPMGWDAFGLPAENAAHQHGID-PREWTVGNIATMKSQL 265 (365)
Q Consensus 188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr-~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~-~~e~~~~~~~~i~~~l 265 (365)
+-+...-|++.+.+||||||++|..|+++|||+ +.||+|.+++|+||+|.+|...|++.|++ +.++++.+.+.|.+++
T Consensus 61 v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~~d~ 140 (651)
T PTZ00399 61 VRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFFEDM 140 (651)
T ss_pred eEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 444444677779999999999999999999999 99999999999999999999999999999 9999999999999999
Q ss_pred HhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCC
Q psy7914 266 QGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDN 316 (365)
Q Consensus 266 ~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~ 316 (365)
++|||..+ .++.+. ..|...+.+++++|+++|++|+.++.+|||.+.-
T Consensus 141 ~~Lni~~p--~~~~r~-tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~f 188 (651)
T PTZ00399 141 KALNVRPP--DVITRV-SEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAF 188 (651)
T ss_pred HHcCCCCC--ccccCc-CccHHHHHHHHHHHHHCCCEEEECCeEEEEchhc
Confidence 99999887 444444 6899999999999999999999999999998864
No 61
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.79 E-value=4.9e-19 Score=163.87 Aligned_cols=90 Identities=17% Similarity=0.131 Sum_probs=82.0
Q ss_pred EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914 189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 268 (365)
Q Consensus 189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l 268 (365)
-+....|+|+|++||||+|+++++|+++||+|++|++|+++.|+||||++|+..|++.|++|+++++.+.+.+++++++|
T Consensus 22 ~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~~~~l 101 (213)
T cd00672 22 TMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFEDMKAL 101 (213)
T ss_pred eEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 33344556668999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCc-cCCCcccc
Q psy7914 269 GCKF-NWESELAT 280 (365)
Q Consensus 269 gI~~-D~~~~~~t 280 (365)
||++ | .+.+|
T Consensus 102 ~i~~~d--~~~rt 112 (213)
T cd00672 102 NVLPPD--VVPRV 112 (213)
T ss_pred CCCCCC--cceee
Confidence 9998 6 55666
No 62
>KOG0435|consensus
Probab=99.78 E-value=1.1e-19 Score=185.88 Aligned_cols=80 Identities=25% Similarity=0.510 Sum_probs=73.0
Q ss_pred hhhhHHHHHhccCCCCCCCChhHHHHHhcccccccceEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceEE
Q psy7914 17 GRAGAMDLYEGLSDPILQDWKDIVNLQKHWIGEPNGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYI 96 (365)
Q Consensus 17 ~~~ya~~Ll~~l~~~~l~~w~~v~~mQ~nWIG~~~g~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f~ 96 (365)
.++||++||+||++ |++||+||.|||||||+|+|+++.|++.+.+. -++.|+|||++|++|+++. |+
T Consensus 220 ttaYAk~L~d~L~~--L~~W~~vk~mQrnWIG~~~G~el~F~ll~~~~-------~de~ltv~Tt~Petl~~~~----f~ 286 (876)
T KOG0435|consen 220 TTAYAKRLLDGLET--LPEWPEVKDMQRNWIGRCDGAELMFPLLDDGS-------NDEILTVYTTRPETLFGAS----FL 286 (876)
T ss_pred hhHHHHHHHHHHHh--hhhhhhHHHHHHhhcccccceEEEEEeccCCC-------CCceEEEEecCchhhccce----EE
Confidence 47999999999998 99999999999999999999999999976421 1467999999999999999 99
Q ss_pred EecCccccccccc
Q psy7914 97 TVKSSHILASKTK 109 (365)
Q Consensus 97 ~l~~~h~l~~~~~ 109 (365)
+|+++|+|+....
T Consensus 287 vl~~~H~L~~~~~ 299 (876)
T KOG0435|consen 287 VLAPSHSLLDKDS 299 (876)
T ss_pred EEcCCchhhhhhc
Confidence 9999999999877
No 63
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.76 E-value=2.3e-18 Score=178.33 Aligned_cols=159 Identities=19% Similarity=0.237 Sum_probs=127.0
Q ss_pred hhhcCCcccccCCCCcccchhhHHHHHHhhhHHHHHhhcCC--CCCc----cccCCCCCcCCCCCC-CceEEEecCCCCC
Q psy7914 126 SIVSSDPMLRDRKKPVCGESLNQVLKLVCDGVYRRRRSISS--PSDF----GVSSVGGTLEGKRRE-DNFYVLSMFPYPS 198 (365)
Q Consensus 126 ~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~--~~~~----g~~~~~~~~~~~~~~-~~~~I~~~~Pnpn 198 (365)
-|||++||||++++++.+.+++.+.+++.++..++...++. ++.+ .+....+++++.++. +..+++.++|+||
T Consensus 32 ~~~~~~pelr~~~~ei~~~v~~~v~~vn~ms~ee~~~~l~~~~pe~~~~~~~~~~~~~~lp~L~~ae~g~V~tRFaPsPt 111 (567)
T PRK04156 32 KIMGENPELRSKAKEIIPIVKEVVEEVNSLSLEEQRERLEELAPELLEEEEEKKEEKKGLPPLPNAEKGKVVMRFAPNPS 111 (567)
T ss_pred hhhccChhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhChhhhhhhhhhcccccCCCCCCCCCCCeEEEEeCCCCC
Confidence 48999999999999999999999999999999998877653 4432 122233456666665 5569999999999
Q ss_pred CCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCccCCCcc
Q psy7914 199 GSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESEL 278 (365)
Q Consensus 199 G~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D~~~~~ 278 (365)
|+|||||+|++++.+.+|| ...|.-++++-.||.-- .....++.+.|.++|++||+.+| ..+
T Consensus 112 G~LHIGharaalln~~~Ar--~~~G~~iLRidDTDpk~--------------~R~~~e~~~~I~edL~wLGl~wD--~~~ 173 (567)
T PRK04156 112 GPLHLGHARAAILNDEYAK--MYGGKFILRFEDTDPRT--------------KRPDPEAYDMILEDLKWLGVKWD--EVV 173 (567)
T ss_pred CCccHHHHHHHHHHHHHHH--HcCCEEEEeEccCCCCc--------------ccchHHHHHHHHHHHHHcCCCCC--Ccc
Confidence 9999999999999999999 78999999998887511 11234667999999999999665 544
Q ss_pred cccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914 279 ATCDPKYYKWTQALFLDLYHAGLVYR 304 (365)
Q Consensus 279 ~t~d~~~~~~v~~~f~~L~~kG~Iy~ 304 (365)
+.+ .+.+...++.++|.++|++|.
T Consensus 174 ~qS--dr~~~y~~~a~~Li~~G~AY~ 197 (567)
T PRK04156 174 IQS--DRLEIYYEYARKLIEMGGAYV 197 (567)
T ss_pred Ccc--cCHHHHHHHHHHHHHcCCCcc
Confidence 444 466777899999999999984
No 64
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.73 E-value=9.6e-18 Score=165.55 Aligned_cols=146 Identities=17% Similarity=0.198 Sum_probs=113.8
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCC------------------CchHHHHHHHcCC
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAF------------------GLPAENAAHQHGI 248 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~------------------G~~I~~~A~~~g~ 248 (365)
+++|+++. +|||++||||++.++.+|+++|++|++|++|.+++|+||| |.|+...+...|.
T Consensus 20 ~~~v~tgi-~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~ 98 (353)
T cd00674 20 KYVVASGI-SPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGC 98 (353)
T ss_pred eEEEecCC-CCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCC
Confidence 46666666 5999999999999999999999999999999999999999 7888888888888
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEE------e----Cc---ceeecCCC
Q psy7914 249 DPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR------K----EA---TVNWDPID 315 (365)
Q Consensus 249 ~~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~------~----~~---~v~yc~~~ 315 (365)
.+ ++++.+...+++.|+.|||++| .+..|.........+.++..|.+++.|.+ + .. ...+|++|
T Consensus 99 ~~-~~~d~~~~~f~~~l~~lgi~~d--~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~~~~~~~~~~~P~~p~c~~c 175 (353)
T cd00674 99 CE-SYAEHFERPFEESLEKLGIEVE--FISQSQMYKSGLYDENILIALEKRDEIMAILNEYRGRELQETWYPFMPYCEKC 175 (353)
T ss_pred CH-HHHHHHHHHHHHHHHHcCCeee--eeecCCchhhchHHHHHHHHHHHCChHHHHHHHhcCCccCCCceeeeeecCCc
Confidence 77 9999999999999999999998 33444444445677888888988888753 1 11 12569999
Q ss_pred Ccccccccc-ccC-------CCccCCCCccEE
Q psy7914 316 NTVLADEQV-DEQ-------GISWRSGARVEK 339 (365)
Q Consensus 316 ~t~Ls~~ev-e~~-------~~c~~~g~~~e~ 339 (365)
+ -+. ..| +++ ..| .||+..+.
T Consensus 176 g-~~~-~~v~~~d~~~~~v~y~c-~cG~~g~~ 204 (353)
T cd00674 176 G-KDT-TTVEAYDAKAGTVTYKC-ECGHEETV 204 (353)
T ss_pred C-cce-eEEEEEeCCCCeEEEEc-CCCCEEEE
Confidence 8 343 222 222 256 48887654
No 65
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.72 E-value=7.8e-17 Score=154.69 Aligned_cols=126 Identities=19% Similarity=0.218 Sum_probs=107.6
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ 266 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~ 266 (365)
++-+...-|+|...+||||+|++|..|++.|+|+..|++|.++.++.|-+.+|..+|++.|+++.++++.+.+.+.++++
T Consensus 8 ~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~dm~ 87 (300)
T PF01406_consen 8 KVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFEDMK 87 (300)
T ss_dssp EEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 45556668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeC-cceeecCCC
Q psy7914 267 GFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE-ATVNWDPID 315 (365)
Q Consensus 267 ~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~-~~v~yc~~~ 315 (365)
+|||... ...+...+|...+.+++++|.++|++|+.. +.|||++..
T Consensus 88 ~Lnv~~p---~~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~ 134 (300)
T PF01406_consen 88 ALNVLPP---DHYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVSK 134 (300)
T ss_dssp HTT-------SEEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCG
T ss_pred HcCCCCC---ccccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeecc
Confidence 9999874 344556679999999999999999999999 999999874
No 66
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=99.65 E-value=6.8e-16 Score=159.82 Aligned_cols=158 Identities=20% Similarity=0.160 Sum_probs=122.9
Q ss_pred hhhhcCCcccccCCCCcccchhhHHHHHHhhhHHHHHhhcCC--CCCccccCCCCCcCCCCCC-CceEEEecCCCCCCCC
Q psy7914 125 KSIVSSDPMLRDRKKPVCGESLNQVLKLVCDGVYRRRRSISS--PSDFGVSSVGGTLEGKRRE-DNFYVLSMFPYPSGSL 201 (365)
Q Consensus 125 ~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~--~~~~g~~~~~~~~~~~~~~-~~~~I~~~~PnpnG~L 201 (365)
-.+|+++|++|.+.+++...+++.+.+++.++..++...++. ++.-.+...++..++.++. ...+++.++|+|||+|
T Consensus 27 ~~~~~~~p~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~vvtRFaPsPtG~L 106 (560)
T TIGR00463 27 GSVMSNNPELRKKAKEVLEEVEPIVEEVNDLSSEELKELKKSLGVDKKKKEKKAKGLIELPGAKMGEVVMRFAPNPSGPL 106 (560)
T ss_pred ehhhccCCccCcchhhHHHHHHHHHHHHhhcCHHHHHHHHhhhcchhhhccccccCCCCCCCCcCCeeEEEeCCCCCCCc
Confidence 358999999999999999999999999988887776655432 1111111222333445554 3569999999999999
Q ss_pred chHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCccCCCccccc
Q psy7914 202 HMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATC 281 (365)
Q Consensus 202 HiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~ 281 (365)
||||++++++.+.+|| .+.|.-++++-.+|.. .-..++.+.|.++|++||+.+| ..+ .
T Consensus 107 HiGharaalln~~~Ar--~~~G~~iLRidDTDp~----------------R~~~e~~~~I~edL~wLGi~~d--~~~--~ 164 (560)
T TIGR00463 107 HIGHARAAILNQYFAK--KYKGKLIIRFDDTDPR----------------RVKPEAYDMILEDLDWLGVKGD--EVV--Y 164 (560)
T ss_pred cHHHHHHHHHHHHHHH--hcCCEEEEEeCcCCcc----------------cccHHHHHHHHHHHHHcCCCCC--ccc--c
Confidence 9999999999999998 7899999999888861 2235689999999999999866 443 4
Q ss_pred ChhhHHHHHHHHHHHHHCCCEEE
Q psy7914 282 DPKYYKWTQALFLDLYHAGLVYR 304 (365)
Q Consensus 282 d~~~~~~v~~~f~~L~~kG~Iy~ 304 (365)
...|.+...++..+|.++|++|.
T Consensus 165 qSd~~~~y~~~a~~Li~~G~AY~ 187 (560)
T TIGR00463 165 QSDRIEEYYDYCRKLIEMGKAYV 187 (560)
T ss_pred ccccHHHHHHHHHHHHHcCCcee
Confidence 44577888999999999999984
No 67
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.64 E-value=6.7e-16 Score=133.83 Aligned_cols=77 Identities=25% Similarity=0.257 Sum_probs=74.5
Q ss_pred EEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914 190 VLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ 266 (365)
Q Consensus 190 I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~ 266 (365)
|++++|||||++||||+|+++++|+++|++|+.|++|.+++|+||+|.++...|.+.+.+++++++.+.+.++++++
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 77 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENAKAFVERWIERIKEDVE 77 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999887
No 68
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=2.8e-15 Score=150.86 Aligned_cols=125 Identities=19% Similarity=0.209 Sum_probs=113.8
Q ss_pred eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 267 (365)
Q Consensus 188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~ 267 (365)
+-+...-|+|....||||+|++|..|++.|||+..||.|.++..+.|-..+|...|.+.|.++.++++.+.+.+.+++++
T Consensus 23 V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D~~a 102 (464)
T COG0215 23 VKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMDA 102 (464)
T ss_pred EEEEecCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 45555689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC-ccCCCcccccChhhHHHHHHHHHHHHHCCCEEEe-CcceeecCCCC
Q psy7914 268 FGCK-FNWESELATCDPKYYKWTQALFLDLYHAGLVYRK-EATVNWDPIDN 316 (365)
Q Consensus 268 lgI~-~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~-~~~v~yc~~~~ 316 (365)
|||. .| ..+....|+..+.+++++|.++|++|.. ++.|||+++.-
T Consensus 103 L~v~~p~----~~PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f 149 (464)
T COG0215 103 LNVLPPD----IEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKF 149 (464)
T ss_pred hCCCCCc----ccCcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEecccc
Confidence 9995 45 2244456899999999999999999998 68999998854
No 69
>KOG0437|consensus
Probab=99.62 E-value=4.2e-15 Score=153.73 Aligned_cols=166 Identities=24% Similarity=0.445 Sum_probs=133.9
Q ss_pred HhhhHHHHHhhcCCCCCccccCCCCCcCCCCCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCC
Q psy7914 153 VCDGVYRRRRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGW 232 (365)
Q Consensus 153 ~~~~ly~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~ 232 (365)
++.....+| +....|..++.. ...+++++++++++-||.||.||+||+.+..-.|..+-|.|++|++|++..|+
T Consensus 17 iEk~~q~~W---~~e~~fevda~~---el~~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgF 90 (1080)
T KOG0437|consen 17 IEKKYQKKW---DTEKVFEVDAPN---ELQKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGF 90 (1080)
T ss_pred HHHHHHHhh---hhhhheeccCch---hcccccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeeccc
Confidence 444444555 233345443211 22345678999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHc-------CCC--------------------------------------------------------
Q psy7914 233 DAFGLPAENAAHQH-------GID-------------------------------------------------------- 249 (365)
Q Consensus 233 Dd~G~~I~~~A~~~-------g~~-------------------------------------------------------- 249 (365)
.|.|.||...|.+. |.+
T Consensus 91 HCTGMPI~A~AdKLkrEie~fG~ppdf~~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deE 170 (1080)
T KOG0437|consen 91 HCTGMPIKASADKLKREIELFGCPPDFPEEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEE 170 (1080)
T ss_pred ccCCCccHHhHHHHHHHHHHhCCCCCCchhhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHH
Confidence 99999998887431 111
Q ss_pred ------HHHHHHHHHHHHHHHHHhcCCCccCCCcccccC--hhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccc
Q psy7914 250 ------PREWTVGNIATMKSQLQGFGCKFNWESELATCD--PKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLAD 321 (365)
Q Consensus 250 ------~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d--~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~ 321 (365)
|..|...+-..-.++|++||...||.+.+.|+| |.|-.+|.+.|.+|.+.|.|-.+.+..-|||.++.+..|
T Consensus 171 I~~F~d~~~WL~yFPpLc~~dlk~~gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmD 250 (1080)
T KOG0437|consen 171 IKKFADPKHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMD 250 (1080)
T ss_pred hhcccChhHHHHhCChHHHHHHHHhCCCcceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCcccc
Confidence 123444445677899999999999988888887 788899999999999999999999999999999999998
Q ss_pred ccc
Q psy7914 322 EQV 324 (365)
Q Consensus 322 ~ev 324 (365)
.+-
T Consensus 251 HDR 253 (1080)
T KOG0437|consen 251 HDR 253 (1080)
T ss_pred ccc
Confidence 875
No 70
>KOG4426|consensus
Probab=99.52 E-value=8.9e-14 Score=137.10 Aligned_cols=189 Identities=14% Similarity=0.119 Sum_probs=146.1
Q ss_pred CCCchhhhccccceEEEecCccccccccccccCcceeEEEccchhhhhcCCcccccCCCCcccchhhHHHHHHhhhHHHH
Q psy7914 81 PEDTIEDVAKSQGQYITVKSSHILASKTKEKLTENVKHQIENKYKSIVSSDPMLRDRKKPVCGESLNQVLKLVCDGVYRR 160 (365)
Q Consensus 81 ~~p~~~~~~~~~g~f~~l~~~h~l~~~~~a~~~gf~n~~i~n~~~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~ly~~ 160 (365)
.+|..++.+. ...+..+..+.+.++|| |||+|+.++.++.+ +.++.-+
T Consensus 129 ~~P~~va~~l----~~~lP~se~vEk~~iag-pGFiNv~Ls~d~~~------------------------~~i~nll--- 176 (656)
T KOG4426|consen 129 KRPRDVAQEL----QKHLPTSEMVEKCEIAG-PGFINVFLSKDYMS------------------------KQISNLL--- 176 (656)
T ss_pred cCcHHHHHHH----HhhCCchhhhhhhcccC-CceEEEEechHHHH------------------------HHHHHHH---
Confidence 3589999988 78888889999999999 99999999999987 4444333
Q ss_pred HhhcCCCCCccccCCCCCcCCCCCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHH
Q psy7914 161 RRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAE 240 (365)
Q Consensus 161 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~ 240 (365)
..|- +.|.-+.++++|-+.+||.-..||+||.|+.++||.++|.+.+.|++|++...+-|+|+|.-
T Consensus 177 ----~~GV----------~~P~l~~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGTQFG 242 (656)
T KOG4426|consen 177 ----VNGV----------KLPTLSVKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGTQFG 242 (656)
T ss_pred ----HcCC----------CCcccceeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccccchHHHHH
Confidence 1111 12223445788888899999999999999999999999999999999999999999998876
Q ss_pred HHHHHc----------------------------------------------CCCH------HHHHHHHHHHHHHHHHhc
Q psy7914 241 NAAHQH----------------------------------------------GIDP------REWTVGNIATMKSQLQGF 268 (365)
Q Consensus 241 ~~A~~~----------------------------------------------g~~~------~e~~~~~~~~i~~~l~~l 268 (365)
....-. |-+| ..+|+-....+...+++|
T Consensus 243 MLIahL~dkFPd~l~vsp~IgDLQvFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rL 322 (656)
T KOG4426|consen 243 MLIAHLFDKFPDYLSVSPPIGDLQVFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRL 322 (656)
T ss_pred HHHHHHHHhCCchhccCCCchhHHHHHHHHHhccCcCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHh
Confidence 554210 1111 223677778899999999
Q ss_pred CCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcc-eeecCCCCcccc
Q psy7914 269 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEAT-VNWDPIDNTVLA 320 (365)
Q Consensus 269 gI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~-v~yc~~~~t~Ls 320 (365)
.|+.- .--++-|...+.++++.|..+|++.+.++. +-|-+.|+-+|.
T Consensus 323 di~l~-----e~GESFYq~~m~~vveel~~kglvee~~Gr~i~f~~g~~IPLt 370 (656)
T KOG4426|consen 323 DISLK-----ERGESFYQDRMAEVVEELKSKGLVEEDDGRRIMFPEGCDIPLT 370 (656)
T ss_pred cchHh-----hcchhhhhhHHHHHHHHHhcCCceeecCCceEeccCCCCcceE
Confidence 99774 123445777889999999999999998764 467777776654
No 71
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.51 E-value=9.5e-15 Score=151.20 Aligned_cols=147 Identities=18% Similarity=0.160 Sum_probs=100.4
Q ss_pred eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCC--------chH-HHHHHHcCCC---------
Q psy7914 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFG--------LPA-ENAAHQHGID--------- 249 (365)
Q Consensus 188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G--------~~I-~~~A~~~g~~--------- 249 (365)
++|.++. +|||.+||||++..+.+|+++|++|..|++|.+++++|||| +|. +..++..|.+
T Consensus 25 ~~~~~g~-~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~G 103 (510)
T PRK00750 25 VVVETGI-GPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPFG 103 (510)
T ss_pred EEEEeCC-CCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCCC
Confidence 4555555 69999999999999999999999999999999999999997 444 2344444544
Q ss_pred -HHHHHHHHHHHHHHHHHhcCCCccCCCcccccCh-hhHHHHHHHHHHHHHCCCEEE----------eCc---ceeecCC
Q psy7914 250 -PREWTVGNIATMKSQLQGFGCKFNWESELATCDP-KYYKWTQALFLDLYHAGLVYR----------KEA---TVNWDPI 314 (365)
Q Consensus 250 -~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~-~~~~~v~~~f~~L~~kG~Iy~----------~~~---~v~yc~~ 314 (365)
+..|++.+...+++.|+.|||.+| ++++++. ......+.+...|.+++.|.+ ... -..+|+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~gi~~d---~~~~t~~y~~g~~~~~i~~~l~~~~~i~~il~~~~~~~~~~~~~P~~pic~~ 180 (510)
T PRK00750 104 CHESYAEHFNAPLREFLDRFGIEYE---FISATECYKSGRYDEAILTALENRDEIMEILLPYLGEERQATYSPFLPICPK 180 (510)
T ss_pred CchHHHHHHHHHHHHHHHHcCCceE---EEehhhhhccCchHHHHHHHHHhHHHHHHHHHHhcCCccCCCeeeeeeeCCC
Confidence 799999999999999999999998 2233331 111233444444555554432 111 1256999
Q ss_pred CCccccccccc-------cCCCccCCCCccEE
Q psy7914 315 DNTVLADEQVD-------EQGISWRSGARVEK 339 (365)
Q Consensus 315 ~~t~Ls~~eve-------~~~~c~~~g~~~e~ 339 (365)
|++.+.-.-++ +...|. ||+..+.
T Consensus 181 cg~~~~~~~~~~d~~~~~v~y~~~-cG~~~~~ 211 (510)
T PRK00750 181 CGKVLTTPVISYDAEAGTVTYDCE-CGHEGEV 211 (510)
T ss_pred CCccceEEEEEEeCCCCEEEEEcC-CCCEEEE
Confidence 99876522111 122453 8886654
No 72
>PLN02563 aminoacyl-tRNA ligase
Probab=99.50 E-value=2e-14 Score=157.87 Aligned_cols=80 Identities=28% Similarity=0.489 Sum_probs=67.4
Q ss_pred hhhhHHHHHhccCCCCCCCChh-HHHHHhcccccccceEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceE
Q psy7914 17 GRAGAMDLYEGLSDPILQDWKD-IVNLQKHWIGEPNGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQY 95 (365)
Q Consensus 17 ~~~ya~~Ll~~l~~~~l~~w~~-v~~mQ~nWIG~~~g~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f 95 (365)
.++||++|+++|++ |+ ||+ |++||+||||||+|+.|.|++.+... .+.+..|.||||+|+||++++ |
T Consensus 273 it~ya~~L~~~l~~--~~-wp~~v~~~q~nwiG~s~g~~i~F~~~~~~~-----~~~~~~l~V~TTrPeTl~g~t----~ 340 (963)
T PLN02563 273 ITAYADRLLEDLDD--LD-WPESIKEMQRNWIGRSEGAELDFSVLDGEG-----KERDEKITVYTTRPDTLFGAT----Y 340 (963)
T ss_pred cchhHHHHHHhhhh--cC-CCHHHHHHHHHhccccceEEEEEEecCccc-----cCCCCEEEEEeCCChHHhhcc----E
Confidence 47899999999997 75 999 99999999999999999999853100 001346999999999999999 9
Q ss_pred EEecCcccccccc
Q psy7914 96 ITVKSSHILASKT 108 (365)
Q Consensus 96 ~~l~~~h~l~~~~ 108 (365)
++++|+|+++...
T Consensus 341 iav~p~~~yv~~~ 353 (963)
T PLN02563 341 LVVAPEHPLLSSL 353 (963)
T ss_pred EEECCCChhhHhh
Confidence 9999999987543
No 73
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=1.5e-14 Score=154.84 Aligned_cols=84 Identities=18% Similarity=0.312 Sum_probs=72.8
Q ss_pred ccchhhhHHHHHhccCCCCCC-CChh-HHHHHhcccccccceEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccc
Q psy7914 14 KSSGRAGAMDLYEGLSDPILQ-DWKD-IVNLQKHWIGEPNGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKS 91 (365)
Q Consensus 14 ~~~~~~ya~~Ll~~l~~~~l~-~w~~-v~~mQ~nWIG~~~g~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~ 91 (365)
+-..++||++||+||+. |+ .||| |+.||+||||+|.|++|.|.+.+.. . ...++|||++|+|+++++
T Consensus 193 ~~kit~yae~ll~~l~~--l~~~wPE~Vk~mq~nWIg~s~g~~v~f~~~~~~-------~-~~~~~vfttr~dt~~gvt- 261 (814)
T COG0495 193 FFKITDYADELLDDLDK--LATLWPETVKGMQRNWIGPSEGYEVAFVVDGEE-------E-IVSIEVFTTRPDTLFGVT- 261 (814)
T ss_pred EEEechhHHHHHhhhhh--hccCCchhHHHHHHcCcCCCCCeEEEEecCCcc-------c-ceeeeeeeccCccccCeE-
Confidence 44579999999999997 77 4999 9999999999999999999984320 0 235999999999999999
Q ss_pred cceEEEecCccccccccccc
Q psy7914 92 QGQYITVKSSHILASKTKEK 111 (365)
Q Consensus 92 ~g~f~~l~~~h~l~~~~~a~ 111 (365)
|++++++|+|+..-+..
T Consensus 262 ---~~~~a~~h~lv~~~~~~ 278 (814)
T COG0495 262 ---YVVLAPEHPLVGKLVTN 278 (814)
T ss_pred ---EEEEeCCchHHHHHhcC
Confidence 99999999998876665
No 74
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=99.43 E-value=1.3e-13 Score=150.50 Aligned_cols=75 Identities=24% Similarity=0.521 Sum_probs=68.1
Q ss_pred hhhhHHHHHhccCCCCCCCChh-HHHHHhcccccccceEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceE
Q psy7914 17 GRAGAMDLYEGLSDPILQDWKD-IVNLQKHWIGEPNGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQY 95 (365)
Q Consensus 17 ~~~ya~~Ll~~l~~~~l~~w~~-v~~mQ~nWIG~~~g~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f 95 (365)
.++||++|+++|+. +.+||+ |++||+||||+|.|+.|.|++.+. +..|.||||+|+||++.+ +
T Consensus 192 i~~~~~~l~~~l~~--~~~wp~~v~~~q~~wig~s~g~~i~f~~~~~----------~~~l~v~TTrP~Tl~g~~----~ 255 (842)
T TIGR00396 192 ITAYAEELLNDLEE--LDHWPESVKEMQRNWIGKSEGVEITFKIADH----------KEKIAVFTTRPDTIFGVT----Y 255 (842)
T ss_pred hhhhHHHHHHHHhh--hccccHHHHHHHHhcccccceEEEEEEcCCC----------CCEEEEEeCCcHHhhhcc----E
Confidence 46799999999998 889999 999999999999999999998542 345999999999999999 9
Q ss_pred EEecCccccccc
Q psy7914 96 ITVKSSHILASK 107 (365)
Q Consensus 96 ~~l~~~h~l~~~ 107 (365)
++++|+|+++..
T Consensus 256 iav~p~~~~~~~ 267 (842)
T TIGR00396 256 LALAPEHPLVEK 267 (842)
T ss_pred EEECCCCHHHHh
Confidence 999999998765
No 75
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A ....
Probab=99.38 E-value=2e-13 Score=123.57 Aligned_cols=51 Identities=20% Similarity=0.475 Sum_probs=42.5
Q ss_pred hcccccccceEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceEEEecCcccccccc
Q psy7914 44 KHWIGEPNGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHILASKT 108 (365)
Q Consensus 44 ~nWIG~~~g~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~ 108 (365)
|||||||+|++|.|++... .++|+|||+||+||+|++ |++|+++|||++.-
T Consensus 1 rNWIGkS~G~~i~F~i~~~----------~~~i~vFTTrpdTifGvt----fials~~H~lv~~l 51 (185)
T PF13603_consen 1 RNWIGKSEGAEIDFKIKGS----------NEKIEVFTTRPDTIFGVT----FIALSPEHPLVKKL 51 (185)
T ss_dssp HHHH-EEEEEEEEEEBTTS----------SCEEEEEES-GGGGGG------EEEEETTSCHHHHC
T ss_pred CCCcCCcccEEEEEEecCC----------CCEEEEEECCcchhhCce----EEEECCCCHHHHhh
Confidence 7999999999999999763 457999999999999999 99999999988755
No 76
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.36 E-value=4.1e-13 Score=138.77 Aligned_cols=85 Identities=21% Similarity=0.309 Sum_probs=78.6
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCC------------------CchHHHHHHHcCC
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAF------------------GLPAENAAHQHGI 248 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~------------------G~~I~~~A~~~g~ 248 (365)
+++|+++.+ |||++||||++..+.+|+++|++|++|++|.+++++||+ |.|+...+.-.|.
T Consensus 19 ~~~~~tg~~-psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~ 97 (515)
T TIGR00467 19 LYTVASGIT-PSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGC 97 (515)
T ss_pred eEEEecCCC-CCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCC
Confidence 467777766 999999999999999999999999999999999999999 8888888888887
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914 249 DPREWTVGNIATMKSQLQGFGCKFN 273 (365)
Q Consensus 249 ~~~e~~~~~~~~i~~~l~~lgI~~D 273 (365)
. ..|++.+...+.+.|+.|||.++
T Consensus 98 ~-~s~~~h~~~~~~~~l~~~gi~~e 121 (515)
T TIGR00467 98 K-TSYAEHFLIPFLESLPVLGINPE 121 (515)
T ss_pred c-HHHHHHHHHHHHHHHHHcCCeEE
Confidence 6 89999999999999999999886
No 77
>KOG2007|consensus
Probab=99.35 E-value=7.1e-12 Score=125.78 Aligned_cols=127 Identities=18% Similarity=0.142 Sum_probs=107.9
Q ss_pred eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHH-HCCCcEEeccCCCCCCchHHHHHHH--cCCCHHHHHH---HHHHHH
Q psy7914 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYA-MNGKNVFQPMGWDAFGLPAENAAHQ--HGIDPREWTV---GNIATM 261 (365)
Q Consensus 188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr-~~G~~V~~~~g~Dd~G~~I~~~A~~--~g~~~~e~~~---~~~~~i 261 (365)
+-.....|++...-||||||+||-.|++.|+|+ +-||+|.++.++.|-+.+|...|.+ .+..|..+.+ .+.+.|
T Consensus 56 v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~e~~~~l~~~F~~~e~eF 135 (586)
T KOG2007|consen 56 VTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMGEKPLSLSERFCYYEEEF 135 (586)
T ss_pred EEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhccchhhHHHHHHHHHHHH
Confidence 444455899999999999999999999999999 8999999999999999999999972 3444444433 566999
Q ss_pred HHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCc
Q psy7914 262 KSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNT 317 (365)
Q Consensus 262 ~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t 317 (365)
.+|+.+|++... -..|.-.+|...+..+++++.++|+.|.-++.||||...-.
T Consensus 136 ~~DM~~LnvLpP---tv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~kf~ 188 (586)
T KOG2007|consen 136 LQDMAALNVLPP---TVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDKFP 188 (586)
T ss_pred HHHHHHhCCCCC---cccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEeccccc
Confidence 999999999764 45566678999999999999999999999999999987543
No 78
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.27 E-value=1.8e-11 Score=114.91 Aligned_cols=96 Identities=20% Similarity=0.272 Sum_probs=76.5
Q ss_pred EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914 189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 268 (365)
Q Consensus 189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l 268 (365)
+++.++|.|||+|||||+|++++.+.+|| ...|.-++++..+|+-=. .......+.|.++|++|
T Consensus 2 v~~RfaPsPtG~lHiG~~rtal~~~l~Ar--~~~G~~ilRieDtD~~r~--------------~~~~~~~~~i~~dL~wL 65 (240)
T cd09287 2 VVMRFAPNPNGPLHLGHARAAILNGEYAK--MYGGKFILRFDDTDPRTK--------------RPDPEAYDMIPEDLEWL 65 (240)
T ss_pred ceEeCCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEeeCcCCCCcc--------------cchHHHHHHHHHHHHHc
Confidence 57899999999999999999999999999 678888888877775110 12345666799999999
Q ss_pred CCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914 269 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 304 (365)
Q Consensus 269 gI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~ 304 (365)
|+.+| ..+. ...+.+...+++++|.++|++|.
T Consensus 66 Gl~~d--~~~~--qS~r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 66 GVKWD--EVVI--ASDRIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred CCCCC--Cccc--hhccHHHHHHHHHHHHHcCCccc
Confidence 99555 4433 34466777899999999999996
No 79
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=99.27 E-value=9.4e-12 Score=119.10 Aligned_cols=99 Identities=24% Similarity=0.240 Sum_probs=80.6
Q ss_pred EEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcC
Q psy7914 190 VLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG 269 (365)
Q Consensus 190 I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lg 269 (365)
++.++|.|||+|||||+|++++...+|| +..|.-++++-.+|. .....++.+.|.++|++||
T Consensus 2 ~~RFAPSPtG~lHiG~~rtAL~n~l~Ar--~~gG~~iLRiEDtD~----------------~R~~~~~~~~I~~dL~wLG 63 (272)
T TIGR03838 2 RGRFAPSPSGPLHFGSLVAALGSYLDAR--AHGGRWLVRIEDLDP----------------PREVPGAADDILRTLEAYG 63 (272)
T ss_pred eeeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCC----------------CCCChHHHHHHHHHHHHcC
Confidence 5788999999999999999999999999 889999999988885 2223578899999999999
Q ss_pred CCccCCCc-ccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCC
Q psy7914 270 CKFNWESE-LATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPID 315 (365)
Q Consensus 270 I~~D~~~~-~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~ 315 (365)
|.+| .. +..+ .+.+.-.+++++|.++|++| .+||+..
T Consensus 64 l~wD--e~~~~QS--~r~~~Y~~~~~~L~~~G~aY-----~C~Ct~e 101 (272)
T TIGR03838 64 LHWD--GEVVYQS--QRHALYQAALDRLLAAGLAY-----PCQCTRK 101 (272)
T ss_pred CCCC--CCeeeee--CCHHHHHHHHHHHHHcCCEE-----ecCCCHH
Confidence 9776 43 2333 45566789999999999998 3456553
No 80
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=99.25 E-value=1.7e-11 Score=126.09 Aligned_cols=96 Identities=23% Similarity=0.287 Sum_probs=81.5
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ 266 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~ 266 (365)
+.+++.++|.|||+|||||||++++...+|| ...|.-++++-.+|. ..-..++.+.|.++|+
T Consensus 10 g~v~tRFAPsPtG~LHiGharaAlln~l~Ar--~~gG~~iLRiEDTDp----------------~R~~~e~~~~I~~dL~ 71 (523)
T PLN03233 10 GQIVTRFPPEPSGYLHIGHAKAALLNDYYAR--RYKGRLILRFDDTNP----------------SKEKAEFEESIIEDLG 71 (523)
T ss_pred CeEEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEECCCCC----------------CccchHHHHHHHHHHH
Confidence 3589999999999999999999999999999 789999999988874 2334688999999999
Q ss_pred hcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914 267 GFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 304 (365)
Q Consensus 267 ~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~ 304 (365)
|||+.+| ..+.++ .+.+...+...+|.++|.+|.
T Consensus 72 WLGl~wD--~~~~qS--dr~~~y~~~a~~Li~~G~AY~ 105 (523)
T PLN03233 72 KIEIKPD--SVSFTS--DYFEPIRCYAIILIEEGLAYM 105 (523)
T ss_pred HhCCCCC--CCcccc--ccHHHHHHHHHHHHHcCCeEe
Confidence 9999766 544443 466777899999999999984
No 81
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=99.24 E-value=6.6e-12 Score=136.65 Aligned_cols=76 Identities=22% Similarity=0.479 Sum_probs=68.7
Q ss_pred hhhhHHHHHhccCCCCCCCChh-HHHHHhcccccccceEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceE
Q psy7914 17 GRAGAMDLYEGLSDPILQDWKD-IVNLQKHWIGEPNGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQY 95 (365)
Q Consensus 17 ~~~ya~~Ll~~l~~~~l~~w~~-v~~mQ~nWIG~~~g~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f 95 (365)
.++||++|+++|++ +.+||+ |+.||+||||+|.|+.|.|++.+. +..|.||||+|+||++.. +
T Consensus 194 i~~~~~~L~~~l~~--~~~w~~~v~~~~~~wig~~~~~~i~f~~~~~----------~~~l~v~TTrPeTl~g~~----a 257 (805)
T PRK00390 194 ITDYADELLDDLDK--LEDWPEKVKTMQRNWIGRSEGAEVTFKVEDS----------DEKIEVFTTRPDTLFGAT----Y 257 (805)
T ss_pred cchhHHHHHHHHHh--hccCcHHHHHHHHhhccccceEEEEEEccCC----------CCEEEEEeCCchHhhcce----E
Confidence 46899999999998 889999 999999999999999999998642 345999999999999999 9
Q ss_pred EEecCcccccccc
Q psy7914 96 ITVKSSHILASKT 108 (365)
Q Consensus 96 ~~l~~~h~l~~~~ 108 (365)
++++|+|+.+...
T Consensus 258 iav~p~~~~~~~~ 270 (805)
T PRK00390 258 LVLAPEHPLVEKL 270 (805)
T ss_pred EEECCCChhHHhh
Confidence 9999999987664
No 82
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=2.8e-11 Score=123.63 Aligned_cols=99 Identities=20% Similarity=0.257 Sum_probs=82.9
Q ss_pred EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914 189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 268 (365)
Q Consensus 189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l 268 (365)
+++.++|.|||+|||||||++++...+|| ...|.-++++-.||- ..-..++.+.|.++|+||
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar--~~~G~fiLRiEDTD~----------------~R~~~e~~~~I~~~L~WL 71 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYAR--KYGGKFILRIEDTDP----------------ERETPEAEDAILEDLEWL 71 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHH--HhCCEEEEEecCCCC----------------CCCCHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999 889999999988884 223357899999999999
Q ss_pred CCCccCCCc-ccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCC
Q psy7914 269 GCKFNWESE-LATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPI 314 (365)
Q Consensus 269 gI~~D~~~~-~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~ 314 (365)
|+.+| .. ++.+ .+.+...++..+|+++|.+| .+||..
T Consensus 72 Gl~wd--e~~~~QS--~r~~~Y~~~~~~Li~~G~AY-----~c~ct~ 109 (472)
T COG0008 72 GLDWD--EGPYYQS--ERFDIYYEYAEKLIEKGKAY-----VCYCTP 109 (472)
T ss_pred CCCCC--Cceeehh--hhHHHHHHHHHHHHHCCCeE-----EecCCH
Confidence 99666 52 3333 45666788999999999988 456666
No 83
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=99.22 E-value=5.3e-11 Score=123.93 Aligned_cols=96 Identities=24% Similarity=0.297 Sum_probs=80.6
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ 266 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~ 266 (365)
..+++.++|.|||+|||||++++++...+|| ...|.-++++-.+|. ..-..++.+.|.++|+
T Consensus 51 ~~v~tRFAPsPtGyLHIGharaAllN~l~Ar--~~gG~~iLRiEDTDp----------------~R~~~e~~d~IleDL~ 112 (601)
T PTZ00402 51 GKVVTRFPPEASGFLHIGHAKAALINSMLAD--KYKGKLVFRFDDTNP----------------SKEKEHFEQAILDDLA 112 (601)
T ss_pred CeeEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEEcCCCC----------------cccCHHHHHHHHHHHH
Confidence 4589999999999999999999999999999 789999999988874 2334688999999999
Q ss_pred hcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEE
Q psy7914 267 GFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVY 303 (365)
Q Consensus 267 ~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy 303 (365)
|||+.+| .. .+....+.+...++..+|.++|++|
T Consensus 113 WLGl~wD--e~-~~~QSdr~d~y~e~a~~Li~~G~AY 146 (601)
T PTZ00402 113 TLGVSWD--VG-PTYSSDYMDLMYEKAEELIKKGLAY 146 (601)
T ss_pred HCCCCCC--Cc-eeeccccHHHHHHHHHHHHHcCCEE
Confidence 9999665 42 1233446677789999999999998
No 84
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=99.22 E-value=4.1e-11 Score=121.74 Aligned_cols=100 Identities=18% Similarity=0.275 Sum_probs=82.7
Q ss_pred EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914 189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 268 (365)
Q Consensus 189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l 268 (365)
+++.++|.|||+|||||+|++++.-.+|| ...|.-++++-.+|- ..-.+.+.+.|+++|++|
T Consensus 3 vr~RFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRIEDTD~----------------~Rs~~~~~~~I~e~L~wL 64 (445)
T PRK12558 3 VITRFAPSPTGYLHVGNARTALLNWLYAR--KHGGKFILRIDDTDL----------------ERSKQEYADAIAEDLKWL 64 (445)
T ss_pred eeEEeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeccCCc----------------ccchHHHHHHHHHHHHHc
Confidence 67899999999999999999999999999 889999999988883 223478899999999999
Q ss_pred CCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCC
Q psy7914 269 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPID 315 (365)
Q Consensus 269 gI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~ 315 (365)
||.+| .+++.+ ...+.+.+++++|.++|++|+ |||...
T Consensus 65 GI~~D--e~y~QS--er~~~y~~~~e~L~e~G~AY~-----C~Ct~e 102 (445)
T PRK12558 65 GINWD--RTFRQS--DRFDRYDEAAEKLKAAGRLYP-----CYETPE 102 (445)
T ss_pred CCCCC--ccccHH--HHHHHHHHHHHHHHHCCCEEE-----ecCchH
Confidence 99888 333333 334678999999999999884 455554
No 85
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=99.22 E-value=3.7e-11 Score=117.50 Aligned_cols=100 Identities=19% Similarity=0.257 Sum_probs=75.0
Q ss_pred EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914 189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 268 (365)
Q Consensus 189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l 268 (365)
+++.++|.|||+|||||+|++++...+|| +..|.-++++-.+|. .....++.+.|.++|++|
T Consensus 2 v~tRFAPsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iLRieDtD~----------------~R~~~~~~~~i~~~L~wl 63 (314)
T PF00749_consen 2 VRTRFAPSPTGYLHIGHARTALLNYLFAR--KYGGKFILRIEDTDP----------------ERCRPEFYDAILEDLRWL 63 (314)
T ss_dssp -EEEE---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEEEEETSST----------------TTCHHHHHHHHHHHHHHH
T ss_pred eeEeeCCCCCCCcccchhHHHHHHHHHHh--ccCceEEEecccccc----------------ccchhhHHHHHHhheeEE
Confidence 67899999999999999999999999999 889999999988885 223467889999999999
Q ss_pred CCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCC
Q psy7914 269 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPI 314 (365)
Q Consensus 269 gI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~ 314 (365)
|+.+|. ..+.. +.+.+...+++++|.++|.+|. |||.+
T Consensus 64 Gl~~D~-~~~~Q--S~r~~~Y~~~~~~L~~~g~aY~-----C~Csr 101 (314)
T PF00749_consen 64 GLEWDY-GPYYQ--SDRLEIYQEAAEKLIDKGKAYP-----CFCSR 101 (314)
T ss_dssp T---ST-CEEEG--GGGHHHHHHHHHHHHHTTSEEE-----EESEH
T ss_pred EEecCC-eEEeH--HHHHHHHHHHHHHHhhcCCCcc-----ccCCH
Confidence 997762 33333 3456677899999999999984 45554
No 86
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.21 E-value=6.2e-11 Score=111.07 Aligned_cols=94 Identities=18% Similarity=0.247 Sum_probs=79.6
Q ss_pred EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914 189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 268 (365)
Q Consensus 189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l 268 (365)
+++.++|.|||+||+||++++++...+|| ...|.-++++-.+|. .....++.+.|.++|++|
T Consensus 2 v~~RFAPsPtG~lHlG~~~~al~~~l~Ar--~~~G~~iLRieDtD~----------------~R~~~~~~~~I~~dL~wl 63 (238)
T cd00807 2 VVTRFPPEPNGYLHIGHAKAILLNFGYAK--KYGGRCNLRFDDTNP----------------EKEEEEYVDSIKEDVKWL 63 (238)
T ss_pred ceEecCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEecCCCC----------------cccchHHHHHHHHHHHHc
Confidence 57899999999999999999999999999 789999999988874 333468899999999999
Q ss_pred CCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914 269 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 304 (365)
Q Consensus 269 gI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~ 304 (365)
|+.+| ..+..+ .+.+...+++.+|.++|++|.
T Consensus 64 Gl~wD--~~~~QS--~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 64 GIKPY--KVTYAS--DYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred CCCCC--Cceecc--cCHHHHHHHHHHHHHcCCeec
Confidence 99776 444333 345666899999999999998
No 87
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=99.19 E-value=5.8e-11 Score=122.75 Aligned_cols=100 Identities=19% Similarity=0.226 Sum_probs=82.1
Q ss_pred eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 267 (365)
Q Consensus 188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~ 267 (365)
.+++.++|.|||+|||||+|++++...+|| +..|.-++++-.+|. ..-..++.+.|.++|++
T Consensus 51 kv~tRFaPsPtG~LHiGharaalln~~~Ar--~~gG~~iLRiEDTDp----------------~r~~~e~~~~I~~dL~w 112 (574)
T PTZ00437 51 KPYFRFPPEPNGFLHIGHAKSMNLNFGSAR--AHGGKCYLRYDDTNP----------------ETEEQVYIDAIMEMVKW 112 (574)
T ss_pred cEEEEeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEECCCCc----------------cccChHHHHHHHHHHHH
Confidence 488999999999999999999999999999 789999999988773 33346889999999999
Q ss_pred cCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCC
Q psy7914 268 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPI 314 (365)
Q Consensus 268 lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~ 314 (365)
||+.+| ..+ ....|.+...+...+|.++|++|. ++|..
T Consensus 113 LGi~~D--~~~--~qS~y~~~~ye~A~~Li~~G~AY~-----C~cs~ 150 (574)
T PTZ00437 113 MGWKPD--WVT--FSSDYFDQLHEFAVQLIKDGKAYV-----DHSTP 150 (574)
T ss_pred cCCCCC--CCC--cCchhHHHHHHHHHHHHHcCCEEE-----cCCCH
Confidence 999776 443 334556666677889999999984 56654
No 88
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=99.19 E-value=4.8e-11 Score=115.55 Aligned_cols=102 Identities=24% Similarity=0.242 Sum_probs=82.1
Q ss_pred eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 267 (365)
Q Consensus 188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~ 267 (365)
.+++.++|.|||+|||||+|++++...+|| ...|.-++++-.+|. .....++.+.|.++|++
T Consensus 5 ~v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar--~~~G~~iLRiEDtD~----------------~R~~~~~~~~I~~dL~w 66 (299)
T PRK05710 5 PYIGRFAPSPSGPLHFGSLVAALGSWLDAR--AHGGRWLLRIEDIDP----------------PREVPGAADAILADLEW 66 (299)
T ss_pred ceeEEeCcCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEECcCCC----------------CccchHHHHHHHHHHHH
Confidence 478999999999999999999999999999 779999999988875 22335778999999999
Q ss_pred cCCCccCCC-cccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCC
Q psy7914 268 FGCKFNWES-ELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDN 316 (365)
Q Consensus 268 lgI~~D~~~-~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~ 316 (365)
||+.+| . .++.+ .+.+...++.++|.++|++| .+||...+
T Consensus 67 lGl~wD--e~~~~QS--~r~~~Y~~~~~~L~~~G~aY-----~C~Ctr~e 107 (299)
T PRK05710 67 LGLHWD--GPVLYQS--QRHDAYRAALDRLRAQGLVY-----PCFCSRKE 107 (299)
T ss_pred CCCCCC--CCceEee--ccHHHHHHHHHHHHHCCCce-----ecCCCHHH
Confidence 999666 3 33333 34566789999999999988 34565543
No 89
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=99.19 E-value=5.2e-11 Score=123.10 Aligned_cols=96 Identities=18% Similarity=0.263 Sum_probs=78.1
Q ss_pred eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 267 (365)
Q Consensus 188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~ 267 (365)
.+++.++|.|||+|||||||++++...+|| +..|.-++++-.+|. ..-..++.+.|.++|++
T Consensus 29 ~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLRieDTd~----------------~r~~~e~~~~I~~dL~w 90 (554)
T PRK05347 29 RVHTRFPPEPNGYLHIGHAKSICLNFGLAQ--DYGGKCNLRFDDTNP----------------EKEDQEYVDSIKEDVRW 90 (554)
T ss_pred ceEEEeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEECCCCC----------------CcCChHHHHHHHHHHHH
Confidence 488999999999999999999999999999 789999999988874 22346889999999999
Q ss_pred cCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914 268 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 304 (365)
Q Consensus 268 lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~ 304 (365)
||+.+| ...+.++ .+.+...+...+|.++|++|.
T Consensus 91 LGi~~d-~~~~~qS--~r~~~~y~~a~~Li~~G~AY~ 124 (554)
T PRK05347 91 LGFDWS-GELRYAS--DYFDQLYEYAVELIKKGKAYV 124 (554)
T ss_pred cCCCCC-CCceeee--cCHHHHHHHHHHHHHcCCEee
Confidence 999775 1223333 344555567789999999984
No 90
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=99.16 E-value=1.1e-10 Score=120.27 Aligned_cols=95 Identities=19% Similarity=0.260 Sum_probs=77.2
Q ss_pred EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914 189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 268 (365)
Q Consensus 189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l 268 (365)
+++.++|.|||+|||||||++++...+|| +..|.-++++-.+|. ..-..++.+.|.++|++|
T Consensus 1 V~tRFaPsPtG~LHiG~ar~al~n~~~A~--~~~G~~iLRieDTd~----------------~r~~~e~~~~I~~dL~wL 62 (522)
T TIGR00440 1 VHTRFPPEPNGYLHIGHAKSICLNFGYAK--YYNGTCNLRFDDTNP----------------VKEDPEYVESIKRDVEWL 62 (522)
T ss_pred CeEecCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEEcCCCc----------------ccCChHHHHHHHHHHHHc
Confidence 36889999999999999999999999999 889999999988885 223368899999999999
Q ss_pred CCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914 269 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 304 (365)
Q Consensus 269 gI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~ 304 (365)
|+.+| ...+. .+.+.+...+...+|.++|.+|.
T Consensus 63 G~~~d-~~~~~--qS~~~~~~~~~a~~Li~~G~AY~ 95 (522)
T TIGR00440 63 GFKWE-GKIRY--SSDYFDELYRYAEELIKKGLAYV 95 (522)
T ss_pred CCCCC-CCceE--ccccHHHHHHHHHHHHHcCCEEe
Confidence 99775 12233 33345556677899999999984
No 91
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=99.15 E-value=7.8e-11 Score=126.39 Aligned_cols=96 Identities=20% Similarity=0.317 Sum_probs=79.9
Q ss_pred eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 267 (365)
Q Consensus 188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~ 267 (365)
.+++.++|.|||+|||||+|++++...+|| +..|.-++++-.+|. ..-..++.+.|.++|+|
T Consensus 31 ~v~tRFaPsPtG~lHiGhar~alln~~~A~--~~~G~~~LR~eDTd~----------------~r~~~e~~~~I~~dl~w 92 (771)
T PRK14703 31 RVVTRFPPEPNGYLHIGHAKSILLNFGIAR--DYGGRCHLRMDDTNP----------------ETEDTEYVEAIKDDVRW 92 (771)
T ss_pred ceEEEeCcCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeCCCCC----------------CcCChHHHHHHHHHHHH
Confidence 488999999999999999999999999999 889999999988874 22336889999999999
Q ss_pred cCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914 268 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 304 (365)
Q Consensus 268 lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~ 304 (365)
||+.+| .. .+..+.|.+...+...+|.++|++|.
T Consensus 93 LG~~wd--~~-~~~qS~~~~~y~~~a~~Li~~G~aY~ 126 (771)
T PRK14703 93 LGFDWG--EH-LYYASDYFERMYAYAEQLIKMGLAYV 126 (771)
T ss_pred cCCCCC--CC-ceEeecCHHHHHHHHHHHHHcCCccc
Confidence 999776 32 12334466677889999999999884
No 92
>KOG1195|consensus
Probab=99.15 E-value=1.9e-10 Score=115.81 Aligned_cols=177 Identities=18% Similarity=0.152 Sum_probs=130.9
Q ss_pred EEEecCccccccccccccCcceeEEEccchhhhhcCCcccccCCCCcccchhhHHHHHHhhhHHHHHhhcCCCCCccccC
Q psy7914 95 YITVKSSHILASKTKEKLTENVKHQIENKYKSIVSSDPMLRDRKKPVCGESLNQVLKLVCDGVYRRRRSISSPSDFGVSS 174 (365)
Q Consensus 95 f~~l~~~h~l~~~~~a~~~gf~n~~i~n~~~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~g~~~ 174 (365)
+.+++-+..+.+...-+ .|++|++...... +.+...+. ...+.||.++
T Consensus 58 ~e~~~~~~~v~~~~~~~--~~~~f~ln~~~~~------------------------k~~l~~i~------~~~~~~g~~~ 105 (567)
T KOG1195|consen 58 AEALPCNRIVEEVGASG--PFVQFFLNRRRLI------------------------KSVLPIIE------EQREKYGKNE 105 (567)
T ss_pred HHhcccccchHHHhcCC--CeEEEEecHHHHH------------------------HHHHHHHH------HHhcccCccc
Confidence 44444544455555555 8999999887766 33322221 2446788877
Q ss_pred CCCCcCCCCCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHH---HcC----
Q psy7914 175 VGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAH---QHG---- 247 (365)
Q Consensus 175 ~~~~~~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~---~~g---- 247 (365)
.+.++ +++|++.+||.+.|+|+||.|..++|-.+++..+..|++|+++.|.-|+|.++...|. +.|
T Consensus 106 ~~~~k-------~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgll~~g~~~~g~e~~ 178 (567)
T KOG1195|consen 106 LGSGK-------KIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGLLALGFQLYGDEEE 178 (567)
T ss_pred cccCc-------eEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhHHhccHHhhCchhh
Confidence 66655 7899999999999999999999999999999999999999999999999988877761 111
Q ss_pred --CCH-------------------------------------------HHHHHHHHHHHHHHHHhcCCCcc-CCCccccc
Q psy7914 248 --IDP-------------------------------------------REWTVGNIATMKSQLQGFGCKFN-WESELATC 281 (365)
Q Consensus 248 --~~~-------------------------------------------~e~~~~~~~~i~~~l~~lgI~~D-~~~~~~t~ 281 (365)
.+| +++.+--+....+.+++|||.|| |+-+.
T Consensus 179 L~~~pI~hL~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v~FD~y~gES--- 255 (567)
T KOG1195|consen 179 LQLNPIKHLFDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNVKFDEYSGES--- 255 (567)
T ss_pred hccchHHHHHHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhceeeeeccchH---
Confidence 011 11334555677788999999999 44332
Q ss_pred ChhhHHHHHHHHHHHHHCCCEEEeCcceeecCC
Q psy7914 282 DPKYYKWTQALFLDLYHAGLVYRKEATVNWDPI 314 (365)
Q Consensus 282 d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~ 314 (365)
.-+.+..+.+...+..+|++.+.++...++-.
T Consensus 256 -qv~~e~~~~~~d~~rs~~l~~e~dG~~vidL~ 287 (567)
T KOG1195|consen 256 -QVSNEKMQEALDLLRSANLTEEIDGTIVIDLS 287 (567)
T ss_pred -HHHHHHHHHHHHHHHhcCCcccCCCcEEEEec
Confidence 24567788899999999988888888877665
No 93
>PLN02907 glutamate-tRNA ligase
Probab=99.15 E-value=1.6e-10 Score=123.88 Aligned_cols=97 Identities=20% Similarity=0.314 Sum_probs=82.5
Q ss_pred CceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy7914 186 DNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQL 265 (365)
Q Consensus 186 ~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l 265 (365)
.+.+++.++|.|||+|||||||++++...+|| +..|.-++++-.+|. ..-..++.+.|.++|
T Consensus 211 ~~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLR~eDTdp----------------~r~~~e~~~~I~~dl 272 (722)
T PLN02907 211 EGKVCTRFPPEPSGYLHIGHAKAALLNQYFAR--RYKGKLIVRFDDTNP----------------SKESDEFVENILKDI 272 (722)
T ss_pred CCceEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEecCCCC----------------CcCChHHHHHHHHHH
Confidence 35689999999999999999999999999999 889999999988884 223368899999999
Q ss_pred HhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914 266 QGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 304 (365)
Q Consensus 266 ~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~ 304 (365)
++||+.+| ..+.++ .+.+...+...+|.++|.+|.
T Consensus 273 ~wLG~~~d--~~~~qS--~r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 273 ETLGIKYD--AVTYTS--DYFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred HHcCCCCC--Cccccc--ccHHHHHHHHHHHHHcCCeee
Confidence 99999776 554444 466677899999999999985
No 94
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=99.13 E-value=1.1e-10 Score=118.17 Aligned_cols=98 Identities=16% Similarity=0.265 Sum_probs=80.2
Q ss_pred EecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7914 191 LSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC 270 (365)
Q Consensus 191 ~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI 270 (365)
+.++|.|||+|||||+|++++.-.+|| +..|.-++++-.+|. .....++.+.|.++|+|||+
T Consensus 2 ~RFAPSPTG~LHiG~artAL~n~l~Ar--~~gG~fiLRiEDTD~----------------~R~~~e~~~~I~~~L~WlGl 63 (433)
T PRK12410 2 LRFAPSPTGDMHIGNLRAAIFNYIVAK--QQNEDFLIRIEDTDK----------------ERNIEGKDKEILEILNLFGI 63 (433)
T ss_pred CccCCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCCC----------------CcCChHHHHHHHHHHHHcCC
Confidence 567999999999999999999999999 889999999988885 22346788999999999999
Q ss_pred CccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCC
Q psy7914 271 KFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPID 315 (365)
Q Consensus 271 ~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~ 315 (365)
.+| ..++.++ +.+.-.++.++|.++|.+| .|||...
T Consensus 64 ~wD--e~y~QSe--R~~~Y~~~a~~Li~~G~AY-----~C~cs~e 99 (433)
T PRK12410 64 SWD--KLVYQSE--NLKFHRQMAEKLLSEKKAF-----ACFCSEE 99 (433)
T ss_pred CCC--CCeehhc--cHHHHHHHHHHHHHcCCee-----eecCCHH
Confidence 666 6555554 3455678999999999988 3456554
No 95
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=99.11 E-value=1.7e-10 Score=118.49 Aligned_cols=95 Identities=18% Similarity=0.234 Sum_probs=77.3
Q ss_pred EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914 189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 268 (365)
Q Consensus 189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l 268 (365)
+++.++|.|||+|||||+|++++...+|| ...|.-++++-.+|. .....++.+.|.++|+||
T Consensus 2 v~~RfAPsPtG~lHiG~~rtal~n~l~Ar--~~~G~~iLRieDtD~----------------~R~~~~~~~~i~~~L~wl 63 (470)
T TIGR00464 2 VRTRFAPSPTGYLHIGGARTALFNYLFAK--HTGGEFILRIEDTDL----------------ERNIEEAEEAILEGLKWL 63 (470)
T ss_pred ceEeeCCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCCC----------------ccCChHHHHHHHHHHHHC
Confidence 57899999999999999999999999999 889999999988874 233457889999999999
Q ss_pred CCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914 269 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 304 (365)
Q Consensus 269 gI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~ 304 (365)
|+.+|- ..++.++ +.+...++..+|.++|++|.
T Consensus 64 Gl~~de-~~~~QS~--r~~~y~~~~~~L~~~g~aY~ 96 (470)
T TIGR00464 64 GISWDE-GPYYQSQ--RLDIYKKYAKELLEEGLAYR 96 (470)
T ss_pred CCCCCC-CeeehhC--CHHHHHHHHHHHHHcCCEEe
Confidence 996651 2233333 34556788999999999983
No 96
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=99.09 E-value=3.7e-10 Score=105.58 Aligned_cols=90 Identities=21% Similarity=0.335 Sum_probs=75.1
Q ss_pred EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914 189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 268 (365)
Q Consensus 189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l 268 (365)
+++.++|.|||+||+||+|++++...+|| +..|.-++++-.+|. ..-..++.+.|.++|++|
T Consensus 2 v~~RFAPsPtG~lHlG~~r~al~n~l~Ar--~~~G~~iLRieDtD~----------------~R~~~~~~~~I~~dL~wl 63 (230)
T cd00418 2 VVTRFAPSPTGYLHIGHARTALFNFAFAR--KYGGKFILRIEDTDP----------------ERSRPEYVESILEDLKWL 63 (230)
T ss_pred ceEEeCCCCCCcccHHHHHHHHHHHHHHH--HcCCeEEEEeCcCCC----------------CCCChHHHHHHHHHHHHc
Confidence 57899999999999999999999999999 789999999988885 223367899999999999
Q ss_pred CCCccCCC-cccccChhhHHHHHHHHHHHHHCC
Q psy7914 269 GCKFNWES-ELATCDPKYYKWTQALFLDLYHAG 300 (365)
Q Consensus 269 gI~~D~~~-~~~t~d~~~~~~v~~~f~~L~~kG 300 (365)
|+.+| . .+..+ .+.+...+.+++|.++|
T Consensus 64 Gl~wd--~~~~~QS--~r~~~y~~~~~~L~~~g 92 (230)
T cd00418 64 GLDWD--EGPYRQS--DRFDLYRAYAEELIKKG 92 (230)
T ss_pred CCCCC--CCeeehh--cCHHHHHHHHHHHHHcC
Confidence 99776 4 33333 34566678999999999
No 97
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=99.08 E-value=2.7e-10 Score=117.25 Aligned_cols=94 Identities=19% Similarity=0.224 Sum_probs=79.2
Q ss_pred EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914 189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 268 (365)
Q Consensus 189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l 268 (365)
+++.++|.|||+|||||+|++++.-.+|| +..|.-++++-.+|. ......+.+.|.++|+||
T Consensus 5 v~~RfAPSPtG~lHiG~~rtal~n~l~Ar--~~~G~fiLRieDtD~----------------~R~~~~~~~~i~~~L~wl 66 (476)
T PRK01406 5 VRTRFAPSPTGYLHIGGARTALFNWLFAR--HHGGKFILRIEDTDQ----------------ERSTEEAEEAILEGLKWL 66 (476)
T ss_pred eeEEeCCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCCC----------------CCCChHHHHHHHHHHHHC
Confidence 78999999999999999999999999999 889999999988885 233467889999999999
Q ss_pred CCCccCCCc--------ccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914 269 GCKFNWESE--------LATCDPKYYKWTQALFLDLYHAGLVYR 304 (365)
Q Consensus 269 gI~~D~~~~--------~~t~d~~~~~~v~~~f~~L~~kG~Iy~ 304 (365)
|+.+| .. ++.+ .+.+...++.++|.++|++|.
T Consensus 67 Gl~~D--e~p~~~~~gpy~QS--~r~~~y~~~~~~L~~~g~aY~ 106 (476)
T PRK01406 67 GLDWD--EGPDGGPYGPYRQS--ERLDIYKEYAEQLLEEGKAYY 106 (476)
T ss_pred CCCCC--CCCccCCCCceehh--cCHHHHHHHHHHHHHcCCeee
Confidence 99766 33 3333 345666899999999999984
No 98
>PLN02627 glutamyl-tRNA synthetase
Probab=99.06 E-value=6.1e-10 Score=114.94 Aligned_cols=101 Identities=20% Similarity=0.225 Sum_probs=82.3
Q ss_pred eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 267 (365)
Q Consensus 188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~ 267 (365)
-+++.++|.|||+|||||+|++++...+|| +..|.-++++-.+|- .....++.+.|.++|+|
T Consensus 45 ~vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar--~~gG~fiLRIEDTD~----------------~R~~~e~~~~I~~~L~W 106 (535)
T PLN02627 45 PVRVRFAPSPTGNLHVGGARTALFNYLFAR--SKGGKFVLRIEDTDL----------------ARSTKESEEAVLRDLKW 106 (535)
T ss_pred ceEEEeCCCCCCCccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCC----------------CCCChHHHHHHHHHHHH
Confidence 488999999999999999999999999999 889999999988884 23346789999999999
Q ss_pred cCCCccCCCc---------ccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCC
Q psy7914 268 FGCKFNWESE---------LATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPID 315 (365)
Q Consensus 268 lgI~~D~~~~---------~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~ 315 (365)
|||.+| .. ++.+ .+.+.-.++.++|.++|++| .|||...
T Consensus 107 LGl~wD--egp~~gg~~gpy~QS--eR~~~Y~~~a~~Li~~G~AY-----~CfCs~e 154 (535)
T PLN02627 107 LGLDWD--EGPDVGGEYGPYRQS--ERNAIYKQYAEKLLESGHVY-----PCFCTDE 154 (535)
T ss_pred cCCCCC--cCcccCCCCCCeeee--ccHHHHHHHHHHHHHcCCee-----eccCChH
Confidence 999766 32 2333 34566688999999999988 3466554
No 99
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.06 E-value=4.7e-10 Score=115.51 Aligned_cols=101 Identities=22% Similarity=0.277 Sum_probs=81.4
Q ss_pred EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914 189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 268 (365)
Q Consensus 189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l 268 (365)
+++.++|.|||+|||||+|++++.-.+|| +..|.-++++-.+|- .....++.+.|.++|+||
T Consensus 5 vrtRFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRIEDTD~----------------~R~~~~~~~~i~~~L~WL 66 (513)
T PRK14895 5 VITRFAPSPTGFLHIGSARTALFNYLFAR--HHNGKFLLRIEDTDK----------------ERSTKEAVEAIFSGLKWL 66 (513)
T ss_pred eeEeeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECCCCc----------------cccChHHHHHHHHHHHHc
Confidence 67999999999999999999999999999 889999999988873 233467889999999999
Q ss_pred CCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCC
Q psy7914 269 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPID 315 (365)
Q Consensus 269 gI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~ 315 (365)
|+.+|- ..++.++ ..+...+..++|.++|.+|. |||...
T Consensus 67 Gl~wDe-~py~QSe--R~~~Y~~~a~~Li~~G~AY~-----CfCt~e 105 (513)
T PRK14895 67 GLDWNG-EVIFQSK--RNNLYKEAALKLLQNGKAYY-----CFTRQE 105 (513)
T ss_pred CCCCCC-CceeEeC--cHHHHHHHHHHHHHcCCeEE-----ecCcHH
Confidence 996651 2344443 34566789999999999883 466554
No 100
>PLN02859 glutamine-tRNA ligase
Probab=99.05 E-value=5.8e-10 Score=119.02 Aligned_cols=95 Identities=20% Similarity=0.227 Sum_probs=75.9
Q ss_pred eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 267 (365)
Q Consensus 188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~ 267 (365)
.+++.+||.|||+|||||+|++++...+|| .+.|.-++|+-.+|. ..-..++.+.|.++|+|
T Consensus 264 ~V~tRFaPsPtG~LHiGharaallN~~~Ar--~~~G~~~LRieDTdp----------------~r~~~e~~~~I~edL~W 325 (788)
T PLN02859 264 KVYTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGCCYLRFDDTNP----------------EAEKKEYIDHIEEIVEW 325 (788)
T ss_pred ceEEEeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEecCCCC----------------CccchHHHHHHHHHHHH
Confidence 488999999999999999999999999999 789999999988874 23346889999999999
Q ss_pred cCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914 268 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 304 (365)
Q Consensus 268 lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~ 304 (365)
||+.+| ..+.+++ |.+..-+...+|.++|++|.
T Consensus 326 LG~~~d--~~~~qSd--~f~~~Y~~A~~Li~~G~AY~ 358 (788)
T PLN02859 326 MGWEPF--KITYTSD--YFQELYELAVELIRRGHAYV 358 (788)
T ss_pred cCCCCC--CcccccH--hHHHHHHHHHHHHHcCCeEe
Confidence 998554 5444433 33333345667999999984
No 101
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.96 E-value=2.5e-09 Score=100.73 Aligned_cols=90 Identities=18% Similarity=0.225 Sum_probs=73.1
Q ss_pred EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914 189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 268 (365)
Q Consensus 189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l 268 (365)
+++.++|.|||+|||||++++++...+|| +..|.-++++-.+|. ..-..++.+.|.++|++|
T Consensus 2 v~~RfAPsPtG~LHlG~~~~al~n~l~ar--~~~G~~ilRieDtd~----------------~r~~~~~~~~i~~dL~wl 63 (239)
T cd00808 2 VRTRFAPSPTGFLHIGGARTALFNYLFAR--KHGGKFILRIEDTDQ----------------ERSVPEAEEAILEALKWL 63 (239)
T ss_pred ceEEeCCCCCCcccHHHHHHHHHHHHHHH--HcCCeEEEEECcCCC----------------CCCchHHHHHHHHHHHHc
Confidence 57899999999999999999999999999 778988888888774 122357789999999999
Q ss_pred CCCccCCC---------cccccChhhHHHHHHHHHHHHHCC
Q psy7914 269 GCKFNWES---------ELATCDPKYYKWTQALFLDLYHAG 300 (365)
Q Consensus 269 gI~~D~~~---------~~~t~d~~~~~~v~~~f~~L~~kG 300 (365)
||.+| . .+..++ ..+...+++++|.++|
T Consensus 64 Gl~~d--~~~~~~g~~~~~~QS~--r~~~y~~~~~~L~~~g 100 (239)
T cd00808 64 GLDWD--EGPDVGGPYGPYRQSE--RLEIYRKYAEKLLEKG 100 (239)
T ss_pred CCCCC--cCCccCCCCCCEeeeC--CHHHHHHHHHHHHHcC
Confidence 99666 5 344443 4556678889999888
No 102
>KOG1147|consensus
Probab=98.75 E-value=5.3e-08 Score=98.89 Aligned_cols=101 Identities=21% Similarity=0.269 Sum_probs=85.6
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ 266 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~ 266 (365)
+.+++.+||-|+|.||||||..+++.--++- +.+|.-+.+.-.+|. ..=.+++.+.|.+|+.
T Consensus 199 GkVv~RFPPEpSGyLHIGHAKAALLNqYfa~--~~~G~LIvRFDDTNP----------------aKE~~eFe~~IleDl~ 260 (712)
T KOG1147|consen 199 GKVVTRFPPEPSGYLHIGHAKAALLNQYFAQ--AYQGKLIVRFDDTNP----------------AKENEEFEDVILEDLS 260 (712)
T ss_pred CceEEecCCCCCceeehhhHHHHHHHHHHHH--hcCceEEEEecCCCc----------------chhhHHHHHHHHHHHH
Confidence 4689999999999999999999999999887 888988888766664 3334688899999999
Q ss_pred hcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcce
Q psy7914 267 GFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATV 309 (365)
Q Consensus 267 ~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v 309 (365)
.|||..| ..|+.+.|-+.+.....+|.+.|-+|..+.+.
T Consensus 261 ~LgIkpd----~~TyTSDyF~~i~dycv~likeGKAYvDDTp~ 299 (712)
T KOG1147|consen 261 LLGIKPD----RVTYTSDYFDEIMDYCVKLIKEGKAYVDDTPT 299 (712)
T ss_pred HhCcCcc----eeeechhhHHHHHHHHHHHHhcCcccccCCcH
Confidence 9999998 44666778899999999999999999766543
No 103
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=98.47 E-value=2.3e-07 Score=91.74 Aligned_cols=149 Identities=16% Similarity=0.110 Sum_probs=85.2
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCC--------chHHHHHHHcCCC---------
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFG--------LPAENAAHQHGID--------- 249 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G--------~~I~~~A~~~g~~--------- 249 (365)
..+++...-.|+|.+|||++|..+.+|+++|-||.+|++|.+++.+||.+ .|-...++-.|..
T Consensus 23 ~~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP~G 102 (360)
T PF01921_consen 23 EPYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDPFG 102 (360)
T ss_dssp SEEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-TTS
T ss_pred ccEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCCCC
Confidence 35667777789999999999999999999999999999999999999986 2111011111211
Q ss_pred -HHHHHHHHHHHHHHHHHhcCCCccCCCcccccC----h----------hhHHHHHHHHHHHHHCCCEEEeCc--ceeec
Q psy7914 250 -PREWTVGNIATMKSQLQGFGCKFNWESELATCD----P----------KYYKWTQALFLDLYHAGLVYRKEA--TVNWD 312 (365)
Q Consensus 250 -~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d----~----------~~~~~v~~~f~~L~~kG~Iy~~~~--~v~yc 312 (365)
...|++.+...+.+.|+.|||.++ ++++++ - .....+.+++....... ...+. ...+|
T Consensus 103 ~~~SyaeH~~~~~~~~L~~~gie~e---~~s~te~Y~sG~y~~~i~~aL~~~~~I~~Il~~~~~~~--~~~~y~Pf~piC 177 (360)
T PF01921_consen 103 CHESYAEHFNAPFEEFLDEFGIEYE---FISQTEMYRSGRYDEQIRTALENRDEIREILNEYRGRE--RPETYSPFLPIC 177 (360)
T ss_dssp SSSCHHHHHHHHHHHHHHTTT---E---EEECCCCCCTTTTHHHHCHHHHTHHHHHHHHHHHHHHT----TT--SEEEEE
T ss_pred CCccHHHHHHHHHHHHHHHcCCceE---EEeHHHhhhCCchHHHHHHHHHhHHHHHHHHHHhcCcC--CCCCeeeeeeec
Confidence 256899999999999999999886 222222 1 23444555555554333 12221 23679
Q ss_pred CCCCccccccccc-------cCCCccCCCCccEEE
Q psy7914 313 PIDNTVLADEQVD-------EQGISWRSGARVEKR 340 (365)
Q Consensus 313 ~~~~t~Ls~~eve-------~~~~c~~~g~~~e~~ 340 (365)
+.|++.+.-.=++ +..+|..||+..+..
T Consensus 178 ~~cGri~tt~v~~~d~~~~~v~Y~c~~cG~~g~~~ 212 (360)
T PF01921_consen 178 EKCGRIDTTEVTEYDPEGGTVTYRCEECGHEGEVD 212 (360)
T ss_dssp TTTEE--EEEEEEE--SSSEEEEE--TTS---EEE
T ss_pred cccCCcccceeeEeecCCCEEEEEecCCCCEEEEe
Confidence 9999865432222 234788999977643
No 104
>KOG1149|consensus
Probab=98.30 E-value=1.9e-06 Score=85.99 Aligned_cols=121 Identities=16% Similarity=0.206 Sum_probs=87.7
Q ss_pred EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914 189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 268 (365)
Q Consensus 189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l 268 (365)
+-+.+.|-|||.||+|-+|++.+.-.+|| ...|..++++-.+|- ...+....+.|.++|+++
T Consensus 34 VRvRFAPSPTGfLHlGgLRTALfNYLfAr--k~gGkFiLRiEDTDq----------------~R~v~gs~e~i~~~L~w~ 95 (524)
T KOG1149|consen 34 VRVRFAPSPTGFLHLGGLRTALFNYLFAR--KKGGKFILRIEDTDQ----------------KRLIRGSEEAIYEDLKWA 95 (524)
T ss_pred eEEeecCCCCcceehhhHHHHHHHHHHHH--hcCCeEEEEeccccc----------------cccccchHHHHHHHHHhc
Confidence 56788999999999999999999999999 889999999999984 233445567899999999
Q ss_pred CCCccCCC----cccccC-hhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccc------cccc-cCCCccC
Q psy7914 269 GCKFNWES----ELATCD-PKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLAD------EQVD-EQGISWR 332 (365)
Q Consensus 269 gI~~D~~~----~~~t~d-~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~------~eve-~~~~c~~ 332 (365)
||.+|-.. .+-++. ..-.++-.+..++|.+.|.+|+ +||.....-+-. .++- |+.+|..
T Consensus 96 nl~~DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYr-----CFCs~~rL~~lrk~A~k~~~~p~YD~kca~ 166 (524)
T KOG1149|consen 96 NLDWDEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYR-----CFCSEERLDLLRKSALKKHEIPRYDRKCAN 166 (524)
T ss_pred CCCcccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeE-----eccCHHHHHHHHHhhhccCCCCcccchhcc
Confidence 99887111 011121 2344566788889999999985 577765433322 2222 5666653
No 105
>KOG1148|consensus
Probab=98.25 E-value=2.7e-06 Score=87.49 Aligned_cols=96 Identities=21% Similarity=0.299 Sum_probs=79.0
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ 266 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~ 266 (365)
+.+++.+||-|||.|||||+-..-+.=-||+ .+.|..-++.-.+| |+.=.+++.+.|++.-+
T Consensus 247 GkV~TRFPPEPNG~LHIGHaKAInvNFgyAk--~~~G~cyLRfDDTN----------------PEkEee~yf~sI~e~V~ 308 (764)
T KOG1148|consen 247 GKVVTRFPPEPNGILHIGHAKAINVNFGYAK--AHGGVCYLRFDDTN----------------PEKEEEEYFESIKEMVA 308 (764)
T ss_pred CeeEEeCCCCCCceeeecchhheeechhhhh--hhCCeEEEecCCCC----------------cchhhHHHHHHHHHHHH
Confidence 4689999999999999999998777777888 56888888875555 34445789999999999
Q ss_pred hcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914 267 GFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 304 (365)
Q Consensus 267 ~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~ 304 (365)
|||.. .+..|+++.|-...-+.-..|+++|++|.
T Consensus 309 WLG~~----P~kvTysSDyFdqLy~~av~LIrkG~AYV 342 (764)
T KOG1148|consen 309 WLGFE----PYKVTYSSDYFDQLYELAVELIRKGKAYV 342 (764)
T ss_pred HhCCC----ceeeecchhHHHHHHHHHHHHHhcCceeE
Confidence 99984 34668888888888888889999999984
No 106
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=7.3e-06 Score=83.79 Aligned_cols=86 Identities=23% Similarity=0.320 Sum_probs=69.9
Q ss_pred eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCC--------chHHHHHHH-cCCC---------
Q psy7914 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFG--------LPAENAAHQ-HGID--------- 249 (365)
Q Consensus 188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G--------~~I~~~A~~-~g~~--------- 249 (365)
.++...--.|+|.+|||++|..+.+|+++|-||.+|++|.+++=+||+. +|-....++ .|+.
T Consensus 20 ~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~G 99 (521)
T COG1384 20 EYVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPFG 99 (521)
T ss_pred cEEEecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCCcc
Confidence 4666677789999999999999999999999999999999999999987 222122222 2322
Q ss_pred -HHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914 250 -PREWTVGNIATMKSQLQGFGCKFN 273 (365)
Q Consensus 250 -~~e~~~~~~~~i~~~l~~lgI~~D 273 (365)
...+++.+...+.+-|+.|||.+.
T Consensus 100 ~~~Sya~hf~~~f~~~l~~~Gi~~E 124 (521)
T COG1384 100 CCDSYAEHFLRPFEEFLDEFGIEVE 124 (521)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceE
Confidence 356889999999999999999876
No 107
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=97.95 E-value=0.00025 Score=79.07 Aligned_cols=245 Identities=14% Similarity=0.085 Sum_probs=121.9
Q ss_pred cceEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceEEEecCccccccccccccCcceeEEEccchhhhhcC
Q psy7914 51 NGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHILASKTKEKLTENVKHQIENKYKSIVSS 130 (365)
Q Consensus 51 ~g~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~~a~~~gf~n~~i~n~~~~~~~~ 130 (365)
+++.|.|++.+. ...|.|+|++|+|+++.+ .+++.|++..+..++.+ -.+.+......
T Consensus 197 ~~~~ikf~~~~~----------~~~l~~aTtRPETl~g~t----av~V~P~~~Y~~~~~~~----e~~i~s~~~~~---- 254 (938)
T TIGR00395 197 EYILIKFELEDG----------AFYFVAATLRPETVYGVT----NCWVNPTITYVIAEVGG----EKWITSKEAFE---- 254 (938)
T ss_pred eEEEEEEEcCCC----------ceEEEEeeCCcchhhcce----eEEECCCCcEEEEEeCC----cEEEEeHHHHH----
Confidence 568889987531 235999999999999999 99999999866554332 12222322222
Q ss_pred CcccccCCCCcccchhhHHHHHHhhhHHHHHhhcCCCCCccccCCCCCcCCCCCCCceEEE---ec-CCCCCCCCch--H
Q psy7914 131 DPMLRDRKKPVCGESLNQVLKLVCDGVYRRRRSISSPSDFGVSSVGGTLEGKRREDNFYVL---SM-FPYPSGSLHM--G 204 (365)
Q Consensus 131 ~p~~r~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~I~---~~-~PnpnG~LHi--G 204 (365)
.++..... + +++. .+...+..|..- ..|..++ .+.|+ ++ +-.-||-.|. +
T Consensus 255 --~~~~q~~~--------~-~~~~--------~~~g~~l~G~~~----~~P~~~~-~ipil~~~~V~~~~GTGvV~~~Pa 310 (938)
T TIGR00395 255 --NLSYQKLK--------Y-KPIE--------EVPGKQFIGKKV----HNPVVGP-EVPILPAEFVDTTKGTGVVMSVPA 310 (938)
T ss_pred --hhhhcccc--------e-eEEE--------EEchHhccCCEE----ECCCCCC-eeEEeecceeecCCCcceEEeCCC
Confidence 01100000 0 0000 000011112110 0111121 23333 22 5578899887 7
Q ss_pred HHHH-H-HHhhHHHHHHHHC-------CCcEEeccCCCCCC-chHHHHHHHcCCCHH----HHHHHHHHHHHHHHHhcCC
Q psy7914 205 HVRV-Y-TISDTLARYYAMN-------GKNVFQPMGWDAFG-LPAENAAHQHGIDPR----EWTVGNIATMKSQLQGFGC 270 (365)
Q Consensus 205 Har~-~-v~~DvlaR~lr~~-------G~~V~~~~g~Dd~G-~~I~~~A~~~g~~~~----e~~~~~~~~i~~~l~~lgI 270 (365)
|+-. + ++.|.-.| ++.- ..+..-+..+|..| .+......+.|+.-. .+.+..-..+++.+ .-|+
T Consensus 311 h~p~Dy~~~~~l~~~-~~~~gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f-~~G~ 388 (938)
T TIGR00395 311 HAPDDYIALEDLLHD-PEYLGIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEY-HTGV 388 (938)
T ss_pred CCHHHHHHHHHhhhc-chhcCCcchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhc-cCce
Confidence 7764 3 33443322 1111 23334455566667 444444445443211 11110011111111 0233
Q ss_pred CccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEE-EeeeeeEeC
Q psy7914 271 KFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKR-RLSQWFIRT 349 (365)
Q Consensus 271 ~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~-~~~~~ff~L 349 (365)
..+-...+.-. .-.+.-..+.+.|.++|++.... .+ + + .+.|.+||.+++.+ ..++|||++
T Consensus 389 m~~~~~~~~G~--~v~ear~~i~~~L~~~g~~~~~~-----~~------~----~-~~v~~R~g~~~vv~~~~~QWFi~~ 450 (938)
T TIGR00395 389 MIYNIPPYKGM--KVSEAKEKVKADLIDAGLADVMY-----EF------S----E-SPVICRCGTDCIVKVVEDQWFVKY 450 (938)
T ss_pred eccCCcccCCc--CHHHhHHHHHHHHHHCCCceEee-----ec------C----C-CCcEecCCCeEEEeccCCCCeEEc
Confidence 22100001111 11233467788899999876532 11 1 1 24466999999987 999999999
Q ss_pred c--hhHHHHHhhhc
Q psy7914 350 T--RLANLVSLVDS 361 (365)
Q Consensus 350 s--~~~~~L~~~~~ 361 (365)
+ ++++++.+++.
T Consensus 451 ~~~~~k~~~~~~l~ 464 (938)
T TIGR00395 451 SDESWKELAHECLE 464 (938)
T ss_pred CcHHHHHHHHHHHh
Confidence 9 59998887654
No 108
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=97.72 E-value=0.00018 Score=80.50 Aligned_cols=58 Identities=21% Similarity=0.419 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeeeEeCchhHHHHHhhh
Q psy7914 288 WTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVD 360 (365)
Q Consensus 288 ~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~ 360 (365)
.-..+++.|.++|++....... . .-|.|++||.+++.+.+++|||++++++++|.++.
T Consensus 364 A~~~Ii~~L~~~g~l~~~~~~~------h---------~~p~c~R~g~pv~~~~~~qWFi~~~~~k~~ll~~~ 421 (975)
T PRK06039 364 ADKEIIRDLKERGLLFKAETYE------H---------SYPHCWRCDTPLIYYATESWFIRVTKIKDRMLELN 421 (975)
T ss_pred hhHHHHHHHHhCCCEeeeeeec------C---------CCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHhh
Confidence 3467888899999886543211 0 13789999999999999999999999999988765
No 109
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=97.53 E-value=0.0011 Score=73.55 Aligned_cols=59 Identities=22% Similarity=0.356 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeeeEeCchhHHHHHhhhc
Q psy7914 288 WTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDS 361 (365)
Q Consensus 288 ~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~~ 361 (365)
.-..+++.|.++|++........ .-|.|++||.+++.+.+++||++++++++++.+.+.
T Consensus 382 a~~~ii~~L~~~g~l~~~~~~~h---------------~~p~~~R~~~~v~~~~~~QWFi~~~~~k~~~l~~~~ 440 (861)
T TIGR00392 382 ANKIIIEQLKDKGLLLKAEKITH---------------SYPHCWRTKTPVIYRATEQWFIKTKDIKDQMLEQIK 440 (861)
T ss_pred hHHHHHHHHHhCCCeeeeeeEec---------------CCCccCCCCCEEEEecCccccEEcHHHHHHHHHHhC
Confidence 44678888999998754322111 125799999999999999999999999999887653
No 110
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=97.49 E-value=0.00065 Score=75.62 Aligned_cols=58 Identities=21% Similarity=0.301 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeeeEeCch--hHHHHHhhh
Q psy7914 288 WTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTR--LANLVSLVD 360 (365)
Q Consensus 288 ~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ff~Ls~--~~~~L~~~~ 360 (365)
.-..+++.|.++|++....... . .-|.|++||.+++.+.+++||+++++ +++++.+.+
T Consensus 371 a~~~Ii~~L~~~g~l~~~~~~~------h---------~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~l~~~ 430 (912)
T PRK05743 371 ANPKIIEKLEEKGALLKEEKIT------H---------SYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAI 430 (912)
T ss_pred hHHHHHHHHHhCCCeeeeeeee------c---------cCCeecCCCCEEEEEecCcccEeCChHHHHHHHHHHH
Confidence 3467888899998875543211 0 12679999999999999999999998 888776654
No 111
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=97.28 E-value=0.0021 Score=72.33 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeeeEeCchhHHHHHhhhc
Q psy7914 288 WTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDS 361 (365)
Q Consensus 288 ~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~~ 361 (365)
.-..+++.|.++|++.+.... .. .-|.|.+||.++|.+.+++||++++++++++.+++.
T Consensus 362 ar~~ii~~L~~~g~l~~~~~~------------~~---~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al~~v~ 420 (995)
T PTZ00419 362 CRRKIEEELKEMGLLRDKVPN------------PM---RLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVR 420 (995)
T ss_pred HHHHHHHHHHhcCCEEeeEEe------------ec---CCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHHhh
Confidence 446778889999988654211 00 127799999999999999999999999999888764
No 112
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=97.15 E-value=0.0085 Score=66.78 Aligned_cols=45 Identities=7% Similarity=-0.124 Sum_probs=36.0
Q ss_pred ccceEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceEEEecCccccccccc
Q psy7914 50 PNGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHILASKTK 109 (365)
Q Consensus 50 ~~g~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~~ 109 (365)
++++.|.|+ .+. +..|.|||++|+|+++.+ .+++.|++..+..++
T Consensus 157 ~~~~~ikf~-~~~----------~~~l~~~TtrPeTl~g~t----ai~V~P~~~Y~~~~~ 201 (897)
T PRK12300 157 VEYTLIKFE-ESE----------DLILPAATLRPETIFGVT----NLWVNPDATYVKAEV 201 (897)
T ss_pred ceEEEEEEe-CCC----------ceEEEEEECCcchhccce----EEEECCCCcEEEEEE
Confidence 566788897 221 345999999999999999 999999998766553
No 113
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=96.99 E-value=0.0068 Score=67.97 Aligned_cols=58 Identities=28% Similarity=0.335 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeeeEeCch-------hHHHHHhhh
Q psy7914 288 WTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTR-------LANLVSLVD 360 (365)
Q Consensus 288 ~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ff~Ls~-------~~~~L~~~~ 360 (365)
.-..+++.|.++|++....... . .-|.|++||.|++.+.+++||++++. +++++.+.+
T Consensus 402 a~~~Ii~~L~~~g~l~~~~~~~------h---------~yp~~wR~~~pii~r~t~QWFi~~~~~~~~~~~~k~~al~~i 466 (961)
T PRK13804 402 ANKAVIEKLIEAGLLLARGRLK------H---------SYPHSWRSKKPVIFRNTPQWFISMDKDLGDGTTLRSRALDAI 466 (961)
T ss_pred hhHHHHHHHHhCCCccccccee------c---------CCCccCCCCCeEEEeccccccEEcCCcccchHHHHHHHHHHH
Confidence 3467788899988876432211 0 13679999999999999999999998 888766543
No 114
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=96.66 E-value=0.025 Score=60.35 Aligned_cols=59 Identities=24% Similarity=0.355 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeeeEeCchhHHHHHhhh
Q psy7914 287 KWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVD 360 (365)
Q Consensus 287 ~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~ 360 (365)
+.-..+++.|.++|++....... . .-+.|.+||.+++.+-.++||++++++++++.+..
T Consensus 335 ~ar~~ii~~L~~~g~l~~~~~~~------~---------~~p~c~R~~~~ii~~~~~QWFi~~~~~k~~~l~~~ 393 (601)
T PF00133_consen 335 EAREKIIEDLKEKGLLLKIEEIE------H---------SYPHCWRSGTPIIPRLTDQWFIKYDDWKKKALEAL 393 (601)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEEE------E---------EEEEETTTSCBEEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred eccHHHHHHHHHhhhhccccccc------c---------ccceecCCCCEEEecccceeEEecHHhHHHHHhhc
Confidence 34578888899999876432110 0 12468899999999999999999999988866544
No 115
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.23 E-value=0.038 Score=61.25 Aligned_cols=53 Identities=21% Similarity=0.412 Sum_probs=41.9
Q ss_pred HHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeeeEeCchhHHHHH
Q psy7914 290 QALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVS 357 (365)
Q Consensus 290 ~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~ 357 (365)
..+++.|.++|.+....... . -=|.|++|+.|+.+|.+++||..++++++++.
T Consensus 378 ~~Ii~~Lk~~g~Ll~~e~i~------H---------sYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l 430 (933)
T COG0060 378 KKIIEDLKEKGNLLKSEKIE------H---------SYPHCWRTKTPLIYRATPQWFVSVDKLRDKML 430 (933)
T ss_pred HHHHHHHHhCCceeeeeeEE------e---------CCCcccCCCCeeEEeecchheeEHHHHHHHHH
Confidence 67788888888765442211 1 13689999999999999999999999999976
No 116
>PLN02882 aminoacyl-tRNA ligase
Probab=96.04 E-value=0.028 Score=64.18 Aligned_cols=56 Identities=13% Similarity=0.345 Sum_probs=43.9
Q ss_pred HHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeeeEeCchhHHHHHhh
Q psy7914 289 TQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLV 359 (365)
Q Consensus 289 v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~ 359 (365)
-..+++.|.++|++....... -.=|.|++||.|++.+..++||++++++++++.+.
T Consensus 386 ~~~Ii~~Lk~~g~L~~~~~~~---------------Hsyp~cwR~~tpli~~a~~qWFi~~~~~k~~~l~~ 441 (1159)
T PLN02882 386 DKDIIAAIKAKGRLVKSGSIT---------------HSYPFCWRSDTPLIYRAVPSWFVKVEEIKDRLLEN 441 (1159)
T ss_pred hHHHHHHHHHCCCccceeeee---------------cCCCEeeCCCCEEEEEecceeEEEcHHHHHHHHHh
Confidence 367888899999876532211 01278999999999999999999999999998763
No 117
>PLN02381 valyl-tRNA synthetase
Probab=95.34 E-value=0.13 Score=58.38 Aligned_cols=59 Identities=20% Similarity=0.238 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeeeEeCchhHHHHHhhh
Q psy7914 287 KWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVD 360 (365)
Q Consensus 287 ~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~ 360 (365)
+.-..+++.|.++|++........ .-|.|++|+.++|.+-.++||++++.++++..+.+
T Consensus 428 eAr~~Ii~~L~~~g~l~~~~~~~h---------------~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al~av 486 (1066)
T PLN02381 428 AAREAVIEALQKKGLYRGAKNNEM---------------RLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDAA 486 (1066)
T ss_pred HHHHHHHHHHHhCCCEecceeeec---------------CCCeeCCCCceEEEeecccceEEchHHHHHHHHHH
Confidence 344678888999998875432110 13789999999999999999999999999876654
No 118
>PF03485 Arg_tRNA_synt_N: Arginyl tRNA synthetase N terminal domain; InterPro: IPR005148 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found at the N terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition [].; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1F7V_A 1F7U_A 1BS2_A 2ZUE_A 2ZUF_A 1IQ0_A 3GDZ_B.
Probab=91.75 E-value=0.035 Score=43.71 Aligned_cols=35 Identities=6% Similarity=-0.077 Sum_probs=29.4
Q ss_pred CCCchhhhccccceEEEecCccccccccccccCcceeEEE
Q psy7914 81 PEDTIEDVAKSQGQYITVKSSHILASKTKEKLTENVKHQI 120 (365)
Q Consensus 81 ~~p~~~~~~~~~g~f~~l~~~h~l~~~~~a~~~gf~n~~i 120 (365)
.+|..++... .-.+..+..+.+.++++ |||+||+|
T Consensus 51 ~~P~~iA~~i----~~~l~~~~~i~~vev~g-pGFiN~~L 85 (85)
T PF03485_consen 51 KNPREIAEEI----AEKLEKSPIIEKVEVAG-PGFINFFL 85 (85)
T ss_dssp S-HHHHHHHH----HHCHCTTTTEEEEEEET-TTEEEEEE
T ss_pred CCHHHHHHHH----HHhcCCCCCEEEEEEcC-CcEEEEeC
Confidence 5789999888 67777777799999999 99999986
No 119
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=91.22 E-value=1.4 Score=44.35 Aligned_cols=74 Identities=26% Similarity=0.294 Sum_probs=43.1
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ 266 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~ 266 (365)
++.+.++ --|||.|||||.. ....+.++.. .|++|....+=+ |.. ...+.++.+.. ++...+..++.
T Consensus 66 ~~~iytG-~~PSG~lHLGh~~---~~~~~~~lQ~-~g~~~~i~IaD~-ha~------~~~~~~~e~~~-~~~~~~~~~~l 132 (368)
T PRK12285 66 PFAVYTG-FMPSGPMHIGHKM---VFDELKWHQE-FGANVYIPIADD-EAY------AARGLSWEETR-EWAYEYILDLI 132 (368)
T ss_pred CeEEEEc-cCCCCCccHHHHH---HHHHHHHHHh-cCCCEEEEecch-HHH------hcCCCCHHHHH-HHHHHHHHHHH
Confidence 4555444 3466999999964 3344555554 788876654433 221 11145555544 34444667888
Q ss_pred hcCCCcc
Q psy7914 267 GFGCKFN 273 (365)
Q Consensus 267 ~lgI~~D 273 (365)
++|+..+
T Consensus 133 A~G~Dp~ 139 (368)
T PRK12285 133 ALGFDPD 139 (368)
T ss_pred HhCCCcc
Confidence 9999766
No 120
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=91.04 E-value=0.97 Score=43.68 Aligned_cols=67 Identities=24% Similarity=0.235 Sum_probs=41.0
Q ss_pred CCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914 196 YPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN 273 (365)
Q Consensus 196 npnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D 273 (365)
-|||.|||||..+++.. +.+ +...|+++.+..+ |.|..- ....+++ -..++...+.+++.++|+..+
T Consensus 7 ~PTG~lHLG~~~~al~~--~~~-lQ~ag~~~~~~Ia-D~ha~t------~~~~~~~-~~~~~~~~~~~~~lA~G~dp~ 73 (280)
T cd00806 7 QPSGSLHLGHYLGAFRF--WVW-LQEAGYELFFFIA-DLHALT------VKQLDPE-ELRQNTRENAKDYLACGLDPE 73 (280)
T ss_pred CCCchhhHHHHHHHHHH--HHH-HHhCCCCEEEEec-chHHHh------CCCCCHH-HHHHHHHHHHHHHHHcCCCcc
Confidence 58999999999886543 222 2334888766643 222220 0112443 345666778888999999665
No 121
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=90.87 E-value=0.96 Score=46.35 Aligned_cols=84 Identities=14% Similarity=0.051 Sum_probs=48.5
Q ss_pred CCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914 194 FPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN 273 (365)
Q Consensus 194 ~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D 273 (365)
---|||.|||||..+++-. ..+.+...|+++.+.. .|-|-.- ...+|.++.+. ...+..++-+.|+..+
T Consensus 8 GiqPTG~lHLGNylGaik~--~v~lq~q~~~~~~~~I-ADlHAlT-------~~~dp~~lr~~-~~e~aa~~LA~GlDPe 76 (431)
T PRK12284 8 GITTTGTPHLGNYAGAIRP--AIAASRQPGVESFYFL-ADYHALI-------KCDDPARIQRS-TLEIAATWLAAGLDPE 76 (431)
T ss_pred EecCCCcchHHHHHHHHHH--HHHHHHhCCCcEEEEe-echhhcc-------CCCCHHHHHHH-HHHHHHHHHHhCCCcc
Confidence 3458999999998887653 2333344588865542 2333221 12456555544 3447888899999776
Q ss_pred CCCcccccC-hhhHHH
Q psy7914 274 WESELATCD-PKYYKW 288 (365)
Q Consensus 274 ~~~~~~t~d-~~~~~~ 288 (365)
-..++..++ +.|.+.
T Consensus 77 k~~if~QSdvpeh~EL 92 (431)
T PRK12284 77 RVTFYRQSDIPEIPEL 92 (431)
T ss_pred ceEEEECCcchhHHHH
Confidence 222333444 454433
No 122
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=90.76 E-value=0.47 Score=45.56 Aligned_cols=72 Identities=24% Similarity=0.254 Sum_probs=44.1
Q ss_pred CCCCC-CCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCC--CchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCC
Q psy7914 195 PYPSG-SLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAF--GLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCK 271 (365)
Q Consensus 195 PnpnG-~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~--G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~ 271 (365)
--||| .|||||..+. -.+.+++++ |++|....+=.++ |.+.-...++.+.++.+ ...+...+.+++.++|..
T Consensus 7 ~~PTg~~lHLG~~~~~---~~~~~lq~~-g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~-i~~~~~~~~~~~~a~g~~ 81 (269)
T cd00805 7 FDPTAPSLHLGHLVPL---MKLRDFQQA-GHEVIVLIGDATAMIGDPSGKSEERKLLDLEL-IRENAKYYKKQLKAILDF 81 (269)
T ss_pred eCCCCCcccHHHHHHH---HHHHHHHHC-CCeEEEEECCCeeecCCCCCccccccCCCHHH-HHHHHHHHHHHHHHHHcc
Confidence 45899 8999998764 356666664 9887776654332 11221112222344443 356667788889998875
No 123
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=90.68 E-value=0.33 Score=43.21 Aligned_cols=93 Identities=14% Similarity=0.038 Sum_probs=47.5
Q ss_pred HHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHH
Q psy7914 214 TLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALF 293 (365)
Q Consensus 214 vlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f 293 (365)
-|||+||+.||++.+..-. ....|...+.+.|.= +...-...++.. ++|+.. +...+....+.+.+++
T Consensus 17 ~LARwLRllGydt~~~~~~--~d~~i~~i~~~e~rI---llTRDr~L~~r~--k~g~~~-----i~i~~~s~~~Ql~e~~ 84 (165)
T COG1656 17 KLARWLRLLGYDTVYSSNE--SDDEIILIAKKEGRI---LLTRDRELYKRA--KLGIKA-----ILIRSDSIEEQLAEFL 84 (165)
T ss_pred HHHHHHHHcCCceeeeccC--CcHHHHHHHhcCCeE---EEeccHHHHHHh--hccCce-----EEEeCCCHHHHHHHHH
Confidence 3799999999999999722 223455555554410 000011222222 456632 2222333455666666
Q ss_pred HHHHHCCCEEEeCcceeecCCCCccccc
Q psy7914 294 LDLYHAGLVYRKEATVNWDPIDNTVLAD 321 (365)
Q Consensus 294 ~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~ 321 (365)
.++-.++.+... .-=||.|+..|..
T Consensus 85 ~~~~l~~~~~~e---~~RCp~CN~~L~~ 109 (165)
T COG1656 85 ARLGLKPRLFPE---FSRCPECNGELEK 109 (165)
T ss_pred HHhccchhcccc---cccCcccCCEecc
Confidence 666555422221 2237778776553
No 124
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=90.32 E-value=1.2 Score=42.82 Aligned_cols=71 Identities=27% Similarity=0.315 Sum_probs=41.0
Q ss_pred CCCC-CCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCC--CchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCC
Q psy7914 196 YPSG-SLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAF--GLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCK 271 (365)
Q Consensus 196 npnG-~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~--G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~ 271 (365)
-||| .|||||..+ -..+.++. ..|+++.+..|=.++ |.|.-...++.-.++ +-+.++...+.+++.++|+.
T Consensus 7 ~PTg~~lHlGh~~~---l~~~~~lq-~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~-~~i~~n~~~~~~~~~a~g~d 80 (273)
T cd00395 7 DPTADSLHIGHLIG---LLTFRRFQ-HAGHRPIFLIGGQTGIIGDPSGKKSERTLNDP-EEVRQNIRRIAAQYLAVGIF 80 (273)
T ss_pred cCCCCCccHHHHHH---HHHHHHHH-HCCCCEEEEEecCceeeCCCCCccccccCCCH-HHHHHHHHHHHHHHHHhcCc
Confidence 4899 699999777 23344443 368888776652211 111101111111233 44456678899999999986
No 125
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=90.15 E-value=0.53 Score=41.04 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=23.3
Q ss_pred HHHHHHHCCCcEEeccCCCCCCchHHHHHHHcC
Q psy7914 215 LARYYAMNGKNVFQPMGWDAFGLPAENAAHQHG 247 (365)
Q Consensus 215 laR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g 247 (365)
+||+||+.|++|.+....+| ..|...|.+++
T Consensus 12 Lar~LR~lG~Dt~~~~~~~D--~~il~~A~~e~ 42 (147)
T PF01927_consen 12 LARWLRLLGYDTLYSRDIDD--DEILELAREEG 42 (147)
T ss_pred HHHHHHHCCCcEEEeCCCCh--HHHHHHhhhCC
Confidence 79999999999999887654 44555555544
No 126
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=88.54 E-value=0.81 Score=40.52 Aligned_cols=54 Identities=9% Similarity=0.010 Sum_probs=37.9
Q ss_pred CCCEEEeCcceeecCCCCcccccccc-ccCCCccCCCCccEEEEeeeeeEeCchhHHHHHhh
Q psy7914 299 AGLVYRKEATVNWDPIDNTVLADEQV-DEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLV 359 (365)
Q Consensus 299 kG~Iy~~~~~v~yc~~~~t~Ls~~ev-e~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~ 359 (365)
+-+-++.+...|.||.|+.-++-.++ +.+..|+.||.+++. ++=+...+.|++-
T Consensus 99 ~~l~~e~~~~~Y~Cp~c~~r~tf~eA~~~~F~Cp~Cg~~L~~-------~dn~~~i~~l~~~ 153 (158)
T TIGR00373 99 EKLEFETNNMFFICPNMCVRFTFNEAMELNFTCPRCGAMLDY-------LDNSEAIEKLEEQ 153 (158)
T ss_pred HHHhhccCCCeEECCCCCcEeeHHHHHHcCCcCCCCCCEeee-------ccCHHHHHHHHHH
Confidence 33555667788899999987776665 357899999999875 3444555555443
No 127
>PLN02886 aminoacyl-tRNA ligase
Probab=87.90 E-value=2 Score=43.62 Aligned_cols=66 Identities=18% Similarity=0.183 Sum_probs=40.0
Q ss_pred CCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN 273 (365)
Q Consensus 195 PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D 273 (365)
--|||.+||||..+++ .-+..+. .|+++.+. =.|-|-. ....++.++. ++...+..+|-++|+..+
T Consensus 53 iqPSG~lHLGnylGai--~~~v~lQ--~~~~~~~~-IADlHAl-------t~~~~~~~lr-~~~~~~~a~~lA~GlDP~ 118 (389)
T PLN02886 53 VQPTGSIHLGNYLGAI--KNWVALQ--ETYDTFFC-VVDLHAI-------TLPHDPRELG-KATRSTAAIYLACGIDPS 118 (389)
T ss_pred ECCCCccHHHHHHHHH--HHHHHHh--ccCCEEEE-EecHHHh-------hCCCCHHHHH-HHHHHHHHHHHHcCcCcc
Confidence 3578999999988876 2333443 37776433 3333322 1123555444 444557788899999776
No 128
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=87.08 E-value=1.8 Score=44.17 Aligned_cols=72 Identities=26% Similarity=0.281 Sum_probs=40.7
Q ss_pred EecCCCCCCC-CchHHHHHHHHhhHHHHHHHHCCCcEEeccCC------CCCCchHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy7914 191 LSMFPYPSGS-LHMGHVRVYTISDTLARYYAMNGKNVFQPMGW------DAFGLPAENAAHQHGIDPREWTVGNIATMKS 263 (365)
Q Consensus 191 ~~~~PnpnG~-LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~------Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~ 263 (365)
.+..--|||+ |||||... -..+.++ ...|+++.+..|- |+.|...+. ...+ .+.+..+...|++
T Consensus 36 vy~G~dPTg~slHlGhlv~---l~~l~~l-Q~~G~~~~~ligd~ta~igDpsgk~~~r----~~l~-~e~i~~n~~~i~~ 106 (408)
T PRK05912 36 IYLGFDPTAPSLHLGHLVP---LLKLRRF-QDAGHKPIALIGGFTGMIGDPSGKSETR----KLLT-REQVAENAETIKE 106 (408)
T ss_pred EEEeecCCCCCccHHhHHH---HHHHHHH-HHCCCcEEEEEcCceeEcCCCCCCchhh----ccCC-HHHHHHHHHHHHH
Confidence 4445568995 99999763 3344444 4468887777643 344433222 2223 3334456666777
Q ss_pred HHHhcCCCc
Q psy7914 264 QLQGFGCKF 272 (365)
Q Consensus 264 ~l~~lgI~~ 272 (365)
++ +.|+.+
T Consensus 107 ql-~~~ld~ 114 (408)
T PRK05912 107 QL-FKFLDF 114 (408)
T ss_pred HH-HHhcCc
Confidence 77 444443
No 129
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=87.04 E-value=2.1 Score=42.33 Aligned_cols=87 Identities=16% Similarity=0.203 Sum_probs=47.0
Q ss_pred cCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCc
Q psy7914 193 MFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKF 272 (365)
Q Consensus 193 ~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~ 272 (365)
..--|||.|||||..+++..= ++...|++|.+...=. |..-. ..+.++.. .......+..++-++|+..
T Consensus 7 ~G~~PTG~~HlG~~l~~~~~~----~~~q~~~~~~i~IaD~-ha~t~-----~~~~~~~~-~~~~~~~~~~~~lA~GlDp 75 (328)
T TIGR00233 7 TGIQPSGKMHLGHYLGAIQTK----WLQQFGVELFICIADL-HAITV-----KDNTDPDA-LRKAREELAADILAVGLDP 75 (328)
T ss_pred EeeCCCcHhHHHHHHHHHHHH----HHHhCCCCEEEEeecc-hhhcC-----CCCCCHHH-HHHHHHHHHHHHHHhCcCh
Confidence 344588999999988765543 3335788876654332 22110 01112333 3444555677788899987
Q ss_pred cCCCcccccC-hhhHHHHH
Q psy7914 273 NWESELATCD-PKYYKWTQ 290 (365)
Q Consensus 273 D~~~~~~t~d-~~~~~~v~ 290 (365)
+-..++..++ +.|.+.++
T Consensus 76 ~k~~if~qS~~~e~~el~~ 94 (328)
T TIGR00233 76 KKTFIFLQSDYPEHYELAW 94 (328)
T ss_pred hheEEEEcCCcHHHHHHHH
Confidence 7212222333 45554444
No 130
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=86.97 E-value=2.2 Score=42.05 Aligned_cols=74 Identities=19% Similarity=0.083 Sum_probs=44.2
Q ss_pred eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCC-cEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGK-NVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ 266 (365)
Q Consensus 188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~-~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~ 266 (365)
+.|+++ --|||.|||||..+++.. +++...++ ++.+. =.|.|..- ..+..+.+-.......+-.++-
T Consensus 6 ~~vlSG-~~PSG~lHLGny~ga~~~----~v~~q~~~~~~f~~-IaDlha~t------~~~~~~~~~l~~~~~e~~a~~L 73 (314)
T COG0180 6 FRVLSG-IQPSGKLHLGNYLGAIRN----WVLLQEEYYECFFF-IADLHAIT------VRQDPTEEDLRQATREVAADYL 73 (314)
T ss_pred ceEEec-CCCCCCcchhHhHHHHHH----HHHHhcccCceEEE-EecHHHhh------cCCCChHHHHHHHHHHHHHHHH
Confidence 344443 358999999999887543 44445564 55443 34443321 1222333445666677777888
Q ss_pred hcCCCcc
Q psy7914 267 GFGCKFN 273 (365)
Q Consensus 267 ~lgI~~D 273 (365)
++||..+
T Consensus 74 A~GiDP~ 80 (314)
T COG0180 74 AVGLDPE 80 (314)
T ss_pred HhccCcc
Confidence 8999877
No 131
>PLN02486 aminoacyl-tRNA ligase
Probab=86.72 E-value=7.8 Score=39.28 Aligned_cols=75 Identities=16% Similarity=0.070 Sum_probs=42.6
Q ss_pred ceEEEecCCCCCCC-CchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy7914 187 NFYVLSMFPYPSGS-LHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQL 265 (365)
Q Consensus 187 ~~~I~~~~PnpnG~-LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l 265 (365)
++++ +..--|||+ |||||.- ....+..+.+..|..+... -+|+ +..+. .+.+.++. .++.....+++
T Consensus 73 ~~~v-YtG~~PSg~~lHlGHlv---~~~~~~~lQ~~~~~~~~I~-iaD~-----e~~~~-~~~~~e~i-~~~~~en~~~i 140 (383)
T PLN02486 73 KFYL-YTGRGPSSEALHLGHLI---PFMFTKYLQDAFKVPLVIQ-LTDD-----EKFLW-KNLSVEES-QRLARENAKDI 140 (383)
T ss_pred CeEE-EeCCCCCCccccHHHHH---HHHHHHHHHHhCCCeEEEE-ecCH-----HHHhh-cCCCHHHH-HHHHHHHHHHH
Confidence 4444 444568995 9999954 4444444444556555444 4454 22222 34555444 44555567777
Q ss_pred HhcCCCcc
Q psy7914 266 QGFGCKFN 273 (365)
Q Consensus 266 ~~lgI~~D 273 (365)
.++|+..+
T Consensus 141 iA~G~dp~ 148 (383)
T PLN02486 141 IACGFDVE 148 (383)
T ss_pred HHhCCCCc
Confidence 77898765
No 132
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=86.00 E-value=1.2 Score=51.28 Aligned_cols=56 Identities=20% Similarity=0.350 Sum_probs=44.0
Q ss_pred HHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeeeEeCchhHHHHHhh
Q psy7914 289 TQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLV 359 (365)
Q Consensus 289 v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~ 359 (365)
-..+++.|.++|++....... . .=|.|++||.|++.+..++||++++++++++.+.
T Consensus 490 ~~~Ii~~Lk~~g~L~~~e~~~------H---------~yP~cwR~~tpli~~a~~QWFI~~~~~k~~~l~~ 545 (1205)
T PTZ00427 490 DNVIKKKLKNENRLLSNNTIV------H---------SYPFCWRSDTPLIYRAIPAWFIRVSNSTNELVKN 545 (1205)
T ss_pred HHHHHHHHHhCCCeeeeeeee------c---------cCCEeCCCCCEEEEEecceeEEeCcHHHHHHHHc
Confidence 367788899999887553211 0 1377999999999999999999999999987763
No 133
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=85.71 E-value=0.71 Score=41.73 Aligned_cols=45 Identities=11% Similarity=-0.008 Sum_probs=33.9
Q ss_pred CCEEEeCcceeecCCCCcccccccc-ccCCCccCCCCccEEEEeee
Q psy7914 300 GLVYRKEATVNWDPIDNTVLADEQV-DEQGISWRSGARVEKRRLSQ 344 (365)
Q Consensus 300 G~Iy~~~~~v~yc~~~~t~Ls~~ev-e~~~~c~~~g~~~e~~~~~~ 344 (365)
-+-++.+...|.||.|+.-++-.++ +.+..|+.||.+++......
T Consensus 108 ~l~~e~~~~~Y~Cp~C~~rytf~eA~~~~F~Cp~Cg~~L~~~dn~~ 153 (178)
T PRK06266 108 QLEEEENNMFFFCPNCHIRFTFDEAMEYGFRCPQCGEMLEEYDNSE 153 (178)
T ss_pred HhhhccCCCEEECCCCCcEEeHHHHhhcCCcCCCCCCCCeecccHH
Confidence 3556677788999999987776665 45789999999998754433
No 134
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=85.57 E-value=3.2 Score=41.21 Aligned_cols=68 Identities=15% Similarity=0.121 Sum_probs=38.4
Q ss_pred CCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN 273 (365)
Q Consensus 195 PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D 273 (365)
--|||.|||||..+++-. ..+++...|.++.+.. .|-|-+ . ...++.++. ++......++-++|+..+
T Consensus 10 iqPTG~~HLGnylga~k~--~~~lq~~~~~~~~~~I-ADlHal---t----~~~~~~~l~-~~~~~~~~~~lA~GlDP~ 77 (332)
T PRK12556 10 IKPTGYPHLGNYIGAIKP--ALQMAKNYEGKALYFI-ADYHAL---N----AVHDPEQFR-SYTREVAATWLSLGLDPE 77 (332)
T ss_pred ECCCCcchHHHHHHHHHH--HHHHHHhcCCeEEEEE-echhhc---c----CCCCHHHHH-HHHHHHHHHHhheeeccc
Confidence 347899999998886543 2223333455454442 232222 0 112555543 444556778889999776
No 135
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=85.51 E-value=2 Score=42.53 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=39.2
Q ss_pred CCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN 273 (365)
Q Consensus 195 PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D 273 (365)
--|||.|||||..+++-. +.++.. +++|.+..+ |-|-. -...++.++ ..+...+..++.++|+..+
T Consensus 8 ~~PTG~lHLG~~~g~~~~--~~~lQ~--~~~~~~~Ia-D~ha~-------t~~~~~~~i-~~~~~~~~~~~lA~GlDp~ 73 (333)
T PRK00927 8 IQPTGKLHLGNYLGAIKN--WVELQD--EYECFFCIA-DLHAL-------TVPQDPEEL-RENTRELAADYLACGIDPE 73 (333)
T ss_pred eCCCccchHHhHHHHHHH--HHHHHh--cCCeEEEEe-cHHHH-------hCCCCHHHH-HHHHHHHHHHHHeEccChh
Confidence 348999999999887532 444444 366665543 21111 011244433 4445567778888999766
No 136
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=85.34 E-value=3 Score=41.27 Aligned_cols=70 Identities=20% Similarity=0.125 Sum_probs=40.2
Q ss_pred ecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCC
Q psy7914 192 SMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCK 271 (365)
Q Consensus 192 ~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~ 271 (365)
...--|||.|||||.. .+. -++++.+ .|++|.+..+ |.|..-. ...++. -+..+...+..++.++|+.
T Consensus 34 ~~G~~PTG~lHLG~~~-~~~--~~~~lq~-~g~~~~i~Ia-D~ha~~~------~~~~~~-~i~~~~~~~~~~~~A~G~d 101 (329)
T PRK08560 34 YIGFEPSGKIHLGHLL-TMN--KLADLQK-AGFKVTVLLA-DWHAYLN------DKGDLE-EIRKVAEYNKKVFEALGLD 101 (329)
T ss_pred EEccCCCCcchhhhhH-HHH--HHHHHHH-CCCeEEEEEc-cchhhcC------CCCCHH-HHHHHHHHHHHHHHHcCCC
Confidence 3445678999999954 222 2555554 4887655543 3332210 012333 3345556688888889986
Q ss_pred cc
Q psy7914 272 FN 273 (365)
Q Consensus 272 ~D 273 (365)
.+
T Consensus 102 p~ 103 (329)
T PRK08560 102 PD 103 (329)
T ss_pred hh
Confidence 55
No 137
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=84.74 E-value=3 Score=42.59 Aligned_cols=76 Identities=18% Similarity=0.175 Sum_probs=42.3
Q ss_pred EEecCCCCCCC-CchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCC--CCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914 190 VLSMFPYPSGS-LHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDA--FGLPAENAAHQHGIDPREWTVGNIATMKSQLQ 266 (365)
Q Consensus 190 I~~~~PnpnG~-LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd--~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~ 266 (365)
..+..--|||+ |||||+-. --.+. ++...|+.+....|--. -|.|--....+...+.++. .++...++.++.
T Consensus 35 ~iy~G~dPT~~sLHlGhlv~---l~~l~-~lq~~G~~~~~ligd~ta~igDpsgk~~~R~~l~~e~i-~~n~~~i~~q~~ 109 (410)
T PRK13354 35 TLYLGFDPTAPSLHIGHLVP---LMKLK-RFQDAGHRPVILIGGFTGKIGDPSGKSKERKLLTDEQV-QHNAKTYTEQIF 109 (410)
T ss_pred EEEEcccCCCCCcchhhHHH---HHHHH-HHHHcCCeEEEEEcccccccCCCCcccccccCCCHHHH-HHHHHHHHHHHH
Confidence 34555668995 99999444 23344 44557898887776444 3333322222233443333 455667777766
Q ss_pred hcCCC
Q psy7914 267 GFGCK 271 (365)
Q Consensus 267 ~lgI~ 271 (365)
+ ++.
T Consensus 110 ~-~ld 113 (410)
T PRK13354 110 K-LFD 113 (410)
T ss_pred H-hcC
Confidence 5 443
No 138
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=81.45 E-value=6.9 Score=39.81 Aligned_cols=65 Identities=22% Similarity=0.222 Sum_probs=39.2
Q ss_pred CCCCCCchHHHHHHHHhhHHHHHHH-HCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914 196 YPSGSLHMGHVRVYTISDTLARYYA-MNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN 273 (365)
Q Consensus 196 npnG~LHiGHar~~v~~DvlaR~lr-~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D 273 (365)
-|||.+||||..+++. .|.. ..|+++.+ +=.|.|-.- ....++.++. ++...+..++.++|+..+
T Consensus 10 qPSG~~HLGnylG~ik-----~wv~lq~~~~~~~-~IADlHAlt------~~~~d~~~ir-~~~~~~~a~~lA~GlDP~ 75 (398)
T PRK12283 10 RPTGRLHLGHYHGVLK-----NWVKLQHEYECFF-FVADWHALT------THYETPEVIE-KNVWDMVIDWLAAGVDPA 75 (398)
T ss_pred CCCCcchHHHHHHHHH-----HHHHHhcCCcEEE-EeecHHHHh------CCCCCHHHHH-HHHHHHHHHHHHcCCCcc
Confidence 4899999999988653 3333 34766543 333433221 0112454443 444567889999999776
No 139
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=81.23 E-value=3.1 Score=42.17 Aligned_cols=74 Identities=14% Similarity=0.012 Sum_probs=40.0
Q ss_pred EecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7914 191 LSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC 270 (365)
Q Consensus 191 ~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI 270 (365)
....--|||.||||| +++..--+..+ ...|++|.+..+- -|..-. ...|.++.++ ......+.+.+.++|+
T Consensus 69 v~~G~~PTG~lHLG~--g~i~~~~~~~l-q~~G~~v~~~IaD-~hA~~~----~~~g~~l~~i-~~~~~~~~~~~~A~Gl 139 (383)
T PTZ00126 69 CYDGFEPSGRMHIAQ--GILKAINVNKL-TKAGCVFVFWVAD-WFALLN----NKMGGDLEKI-RKVGEYFIEVWKAAGM 139 (383)
T ss_pred EEEEECCCCcccccc--hHhHhHHHHHH-HhCCCeEEEEEcc-ceeecC----CCCCCCHHHH-HHHHHHHHHHHHHhCC
Confidence 344445899999999 33222233443 3458887666432 221100 0123344443 4455556777888888
Q ss_pred Ccc
Q psy7914 271 KFN 273 (365)
Q Consensus 271 ~~D 273 (365)
..+
T Consensus 140 Dp~ 142 (383)
T PTZ00126 140 DMD 142 (383)
T ss_pred Ccc
Confidence 765
No 140
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=81.06 E-value=5.8 Score=40.45 Aligned_cols=104 Identities=20% Similarity=0.229 Sum_probs=54.9
Q ss_pred EEecCCCCCC-CCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCC--CCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914 190 VLSMFPYPSG-SLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDA--FGLPAENAAHQHGIDPREWTVGNIATMKSQLQ 266 (365)
Q Consensus 190 I~~~~PnpnG-~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd--~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~ 266 (365)
..+.-.-||| .|||||.-. --.++|+ ...|++|....|-=+ -|.|--...... .-..+.+.++.+.|++++.
T Consensus 34 ~~Y~GfDPTa~slHlGhlv~---l~kL~~f-Q~aGh~~ivLigd~ta~IgDpsGk~e~r~-~l~~e~v~~n~~~i~~ql~ 108 (401)
T COG0162 34 RVYIGFDPTAPSLHLGHLVP---LMKLRRF-QDAGHKPIVLIGDATAMIGDPSGKSEERK-LLTRETVLENAETIKKQLG 108 (401)
T ss_pred eEEEeeCCCCCccchhhHHH---HHHHHHH-HHCCCeEEEEecccceecCCCCCCHHHHh-hccHHHHHHHHHHHHHHhc
Confidence 3445566899 799999754 3344444 668999888876432 134421111111 1123445566666666665
Q ss_pred hc-----CCCccCCCcccccChhhHHHHHHH-----HHHHHHCCC
Q psy7914 267 GF-----GCKFNWESELATCDPKYYKWTQAL-----FLDLYHAGL 301 (365)
Q Consensus 267 ~l-----gI~~D~~~~~~t~d~~~~~~v~~~-----f~~L~~kG~ 301 (365)
.+ -+.+ +.-...+.+|...+..+ +.+|.++.-
T Consensus 109 ~~ld~k~~~v~---ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~ 150 (401)
T COG0162 109 KFLDNKAEFVN---NSDWLKKLNYLDFLRDVGKHFSVNRMLRRDD 150 (401)
T ss_pred ccCCcceEEEe---chHHhCcCCHHHHHHHHHhHccHHHHHHhhh
Confidence 42 1212 12224445566665555 555555543
No 141
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=76.67 E-value=1.9 Score=39.10 Aligned_cols=40 Identities=23% Similarity=0.177 Sum_probs=29.8
Q ss_pred HCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEee
Q psy7914 298 HAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLS 343 (365)
Q Consensus 298 ~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~ 343 (365)
+++-.+-++.++|||..|+-.|.. .+|..||+..+....+
T Consensus 3 kk~~~~~gk~~iyWCe~cNlPl~~------~~c~~cg~~~~~l~LT 42 (202)
T COG5270 3 KKMPVVLGKFPIYWCEKCNLPLLG------RRCSVCGSKVEELRLT 42 (202)
T ss_pred cccceeecccceeehhhCCCcccc------ccccccCCcceEEEeC
Confidence 445677788999999999988764 4677888876555444
No 142
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=76.59 E-value=2.8 Score=47.83 Aligned_cols=60 Identities=22% Similarity=0.188 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeeeEeCchhHHHHHhhhc
Q psy7914 287 KWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDS 361 (365)
Q Consensus 287 ~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~~ 361 (365)
+.-..+++.|.++|++....... . .-|.|++|+.+++.+..++|||+|++|++++.+++.
T Consensus 332 ear~~Ii~~L~~~g~l~~~~~~~--------------h-~~~~c~R~~~~ie~~~s~qWFi~l~~~k~~~~~~v~ 391 (1052)
T PRK14900 332 EARKEVKRLLAEQGLDRGAKPHV--------------L-PLGRCQRSATILEPLLSDQWYVRIEPLARPAIEAVE 391 (1052)
T ss_pred HHHHHHHHHHHhCCCeecceeee--------------c-cCceeCCCCceEEEEeccceeeehHHHHHHHHHHHh
Confidence 34467778888888876542110 0 127789999999999999999999999999888875
No 143
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=76.18 E-value=3.2 Score=45.90 Aligned_cols=37 Identities=8% Similarity=0.083 Sum_probs=30.1
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceEEEecCcccc
Q psy7914 53 VRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHIL 104 (365)
Q Consensus 53 ~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f~~l~~~h~l 104 (365)
+.|.|++.+ +..|.|||++|+||++.. ++++.|+++.
T Consensus 199 ~~ikf~~~~-----------~~~l~v~TtrPeTl~g~~----ai~v~p~~~~ 235 (800)
T PRK13208 199 NYIKFPVED-----------GEEIEIATTRPELLPACV----AVVVHPDDER 235 (800)
T ss_pred EEEEEEecC-----------CCEEEEEeCCcchhhhCe----EEEECCCchH
Confidence 556777642 345999999999999999 9999999754
No 144
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=73.57 E-value=9.8 Score=38.43 Aligned_cols=37 Identities=30% Similarity=0.401 Sum_probs=25.1
Q ss_pred EecCCCCCC-CCchHHHHHHHHhhHHHHHHHHCCCcEEeccC
Q psy7914 191 LSMFPYPSG-SLHMGHVRVYTISDTLARYYAMNGKNVFQPMG 231 (365)
Q Consensus 191 ~~~~PnpnG-~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g 231 (365)
.+.---||| .|||||... .-.+.++. ..|++|....|
T Consensus 33 vy~G~dPTg~~lHlGh~v~---l~~l~~lq-~~G~~~~ilig 70 (377)
T TIGR00234 33 LYVGFDPTAPSLHLGHLVP---LLKLRDFQ-QAGHEVIVLLG 70 (377)
T ss_pred EEEeeCCCCCCccHHHHHH---HHHHHHHH-HCCCcEEEEEe
Confidence 445556899 899999764 23344544 47998877764
No 145
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=72.07 E-value=2.8 Score=36.47 Aligned_cols=44 Identities=11% Similarity=-0.051 Sum_probs=32.1
Q ss_pred HCCCEEEeCcceeecCCCCccccccccc-cC-----CCccCCCCccEEEE
Q psy7914 298 HAGLVYRKEATVNWDPIDNTVLADEQVD-EQ-----GISWRSGARVEKRR 341 (365)
Q Consensus 298 ~kG~Iy~~~~~v~yc~~~~t~Ls~~eve-~~-----~~c~~~g~~~e~~~ 341 (365)
++-+-++.....+.||.|+.-++-.++. .. -.||.||.+++...
T Consensus 88 ~~~l~~e~~~~~Y~Cp~C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~~d 137 (147)
T smart00531 88 EDKLEDETNNAYYKCPNCQSKYTFLEANQLLDMDGTFTCPRCGEELEEDD 137 (147)
T ss_pred HHHHhcccCCcEEECcCCCCEeeHHHHHHhcCCCCcEECCCCCCEEEEcC
Confidence 3446677788899999999877755542 22 68999999987643
No 146
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=70.98 E-value=24 Score=30.40 Aligned_cols=62 Identities=15% Similarity=0.032 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHCCCEEE-------eCcceeecCCCCcccccccc-------------------ccCCCccCCCCc-c
Q psy7914 285 YYKWTQALFLDLYHAGLVYR-------KEATVNWDPIDNTVLADEQV-------------------DEQGISWRSGAR-V 337 (365)
Q Consensus 285 ~~~~v~~~f~~L~~kG~Iy~-------~~~~v~yc~~~~t~Ls~~ev-------------------e~~~~c~~~g~~-~ 337 (365)
+.+..+..|..+. +|-+.+ .....|+|..|+...+-.++ ....+||.||+. +
T Consensus 40 ~pe~L~fafe~l~-~gt~~ega~L~i~~~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP~Cgs~~~ 118 (135)
T PRK03824 40 DKEIVEFALNELL-KGTILEGAEIIFEEEEAVLKCRNCGNEWSLKEVKESLDEEIREAIHFIPEVVHAFLKCPKCGSRDF 118 (135)
T ss_pred hHHHHHHHHHHHH-cCCcccCCEEEEEecceEEECCCCCCEEecccccccccccccccccccccccccCcCCcCCCCCCc
Confidence 3445566666544 454444 34577999999965554320 123569999985 5
Q ss_pred EEEEeeeeeE
Q psy7914 338 EKRRLSQWFI 347 (365)
Q Consensus 338 e~~~~~~~ff 347 (365)
+...-+-+++
T Consensus 119 ~i~~G~el~i 128 (135)
T PRK03824 119 EIVKGRGVYI 128 (135)
T ss_pred EEecCceEEE
Confidence 6555554444
No 147
>PLN02843 isoleucyl-tRNA synthetase
Probab=70.38 E-value=3.5 Score=46.68 Aligned_cols=56 Identities=21% Similarity=0.245 Sum_probs=42.9
Q ss_pred HHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeeeEeCchhHHHHHhhh
Q psy7914 290 QALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVD 360 (365)
Q Consensus 290 ~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~ 360 (365)
..+++.|.++|++...... ..+ =|.|++|+.|++.|-+++||++++.+++++.+.+
T Consensus 390 ~~Ii~~L~~~g~l~~~e~~------~H~---------yp~cwR~~~pvi~r~t~QWFi~~~~~k~~al~~~ 445 (974)
T PLN02843 390 AAVVEALDEAGSLLMEEAY------GHK---------YPYDWRTKKPTIFRATEQWFASVEGFRQAALDAI 445 (974)
T ss_pred HHHHHHHHHCCCeeeeeee------cCC---------CCccCCCCCeEEEEecCceeEeCHHHHHHHHHHH
Confidence 5678889999876533211 111 2789999999999999999999999999876654
No 148
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=69.54 E-value=17 Score=36.12 Aligned_cols=66 Identities=20% Similarity=0.231 Sum_probs=38.6
Q ss_pred CCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914 196 YPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN 273 (365)
Q Consensus 196 npnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D 273 (365)
-|||++||||..+++..= +.+...|. |. +.=.|.|..- . ...++.++. ++......++.++|+..+
T Consensus 10 ~PTG~~HLGn~l~~~~~~---~~lQ~~~~-~~-i~IaD~ha~~-~-----~~~~~~~i~-~~~~~~~~~~lA~G~dp~ 75 (333)
T PRK12282 10 RPTGKLHLGHYVGSLKNR---VALQNEHE-QF-VLIADQQALT-D-----NAKNPEKIR-RNILEVALDYLAVGIDPA 75 (333)
T ss_pred CCCCcchHHHHHHHHHHH---HHHHhCCC-EE-EEEccchhHh-C-----CCCCHHHHH-HHHHHHHHHHHHhCcChh
Confidence 468999999988865432 12333454 43 3335655321 0 134555444 444557778888999776
No 149
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=69.07 E-value=4 Score=34.24 Aligned_cols=48 Identities=17% Similarity=0.210 Sum_probs=37.5
Q ss_pred cCCCCccccccccccCCCccCCCCccEEEEeeeeeEeCch-hHHHHHhhhccc
Q psy7914 312 DPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTR-LANLVSLVDSVS 363 (365)
Q Consensus 312 c~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ff~Ls~-~~~~L~~~~~~~ 363 (365)
||.|+..|.=.++ +|+.|+..++-.=+..||..|++ -.+.++.|+-++
T Consensus 1 CPvCg~~l~vt~l----~C~~C~t~i~G~F~l~~~~~L~~E~~~Fi~~Fi~~r 49 (113)
T PF09862_consen 1 CPVCGGELVVTRL----KCPSCGTEIEGEFELPWFARLSPEQLEFIKLFIKNR 49 (113)
T ss_pred CCCCCCceEEEEE----EcCCCCCEEEeeeccchhhcCCHHHHHHHHHHHHhc
Confidence 8888887776666 59999999999999999999987 444466665443
No 150
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=68.46 E-value=6.2 Score=44.21 Aligned_cols=58 Identities=29% Similarity=0.372 Sum_probs=45.9
Q ss_pred HHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeeeEeCchhHHHHHhhhc
Q psy7914 289 TQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDS 361 (365)
Q Consensus 289 v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~~ 361 (365)
-..+++.|.++|++...... .-.-|.|.+||.++|.+.++||||+++++++++.+++.
T Consensus 319 r~~i~~~L~~~g~l~~~~~~---------------~~~~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~~~~v~ 376 (874)
T PRK05729 319 RKAIVADLEELGLLVKIEPH---------------THSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAVE 376 (874)
T ss_pred HHHHHHHHHhCCCeeeeEEe---------------eccCCeeCCCCceEEEEecCcceEehHHHHHHHHHHHh
Confidence 36778889999987544221 01247899999999999999999999999999988874
No 151
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=67.77 E-value=8.2 Score=34.57 Aligned_cols=28 Identities=21% Similarity=0.099 Sum_probs=22.5
Q ss_pred eeecCCCCccccccccccCCCccCCCCccEE
Q psy7914 309 VNWDPIDNTVLADEQVDEQGISWRSGARVEK 339 (365)
Q Consensus 309 v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~ 339 (365)
+|-|+.|+-..-+ +- -.+||+||.|-+.
T Consensus 134 ~~vC~vCGy~~~g-e~--P~~CPiCga~k~~ 161 (166)
T COG1592 134 VWVCPVCGYTHEG-EA--PEVCPICGAPKEK 161 (166)
T ss_pred EEEcCCCCCcccC-CC--CCcCCCCCChHHH
Confidence 9999999987776 43 6789999987543
No 152
>PLN02943 aminoacyl-tRNA ligase
Probab=67.74 E-value=6.7 Score=44.43 Aligned_cols=40 Identities=13% Similarity=0.004 Sum_probs=32.3
Q ss_pred cceEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceEEEecCccc
Q psy7914 51 NGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHI 103 (365)
Q Consensus 51 ~g~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f~~l~~~h~ 103 (365)
.-+.|.|++.+. ....|.|+||+|+|+++.. .+++.|++.
T Consensus 250 ~~~~i~f~l~~~---------~~~~l~vaTTrPeTl~~~~----avavnP~d~ 289 (958)
T PLN02943 250 TLYYIKYRVAGG---------SEDFLTIATTRPETLFGDV----AIAVNPEDD 289 (958)
T ss_pred cEEEEEEEEcCC---------CCCEEEEEeCChhhhhcce----EEEECCCCH
Confidence 446788888531 0245999999999999999 999999887
No 153
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=66.68 E-value=6 Score=38.15 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=21.5
Q ss_pred CCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccC
Q psy7914 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMG 231 (365)
Q Consensus 195 PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g 231 (365)
--|||+|||||.-.. ..+.++.+ .|++|....+
T Consensus 12 ~~PTg~lHlG~l~~~---~~~~~lq~-~g~~~~i~ia 44 (292)
T PF00579_consen 12 IDPTGDLHLGHLVPI---MKLIWLQK-AGFKVIILIA 44 (292)
T ss_dssp EESSSS-BHHHHHHH---HHHHHHHH-TTSEEEEEEE
T ss_pred ECCCCcccchHHHHH---HHHHHHHh-cCCccceEec
Confidence 347899999986654 23344433 8888888764
No 154
>PLN02959 aminoacyl-tRNA ligase
Probab=65.05 E-value=9.3 Score=43.90 Aligned_cols=57 Identities=18% Similarity=0.182 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeeeEeCc--hhHHHHHhhh
Q psy7914 287 KWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTT--RLANLVSLVD 360 (365)
Q Consensus 287 ~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ff~Ls--~~~~~L~~~~ 360 (365)
+.-..+++.|.++|++..... + ..++|.+||.+++..-.++||++++ +++++..+.+
T Consensus 495 eAr~~Ii~~L~~~G~l~~~~e-----p------------~~pv~~R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l 553 (1084)
T PLN02959 495 EAKPLIKKKLIEAGQAILYSE-----P------------EKKVMSRSGDECVVALTDQWYLTYGEEEWKKKAEKCL 553 (1084)
T ss_pred HHHHHHHHHHHhCCCceeeeE-----c------------CCCeEECCCCEEEEeecCCeeEECCchHHHHHHHHHH
Confidence 344678888999997643111 1 1367889999999999999999998 6777766544
No 155
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=64.38 E-value=4.7 Score=34.64 Aligned_cols=44 Identities=18% Similarity=0.080 Sum_probs=28.8
Q ss_pred HHHHHHHHCCCEEEeCcceeecCCCCccccccccccCC--CccCCCCccEEEEe
Q psy7914 291 ALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQG--ISWRSGARVEKRRL 342 (365)
Q Consensus 291 ~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~--~c~~~g~~~e~~~~ 342 (365)
+.+..|+-+|. .....-||.|+++|.. .+| .||+||...+.+++
T Consensus 14 k~iA~lLl~GA----kML~~hCp~Cg~PLF~----KdG~v~CPvC~~~~~~v~~ 59 (131)
T COG1645 14 KKIAELLLQGA----KMLAKHCPKCGTPLFR----KDGEVFCPVCGYREVVVEE 59 (131)
T ss_pred HHHHHHHHhhh----HHHHhhCcccCCccee----eCCeEECCCCCceEEEeec
Confidence 33446666664 3334579999999987 344 59999976554443
No 156
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=63.20 E-value=3.8 Score=24.39 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=16.4
Q ss_pred ecCCCCccccccccccCCCccCCCCcc
Q psy7914 311 WDPIDNTVLADEQVDEQGISWRSGARV 337 (365)
Q Consensus 311 yc~~~~t~Ls~~eve~~~~c~~~g~~~ 337 (365)
||+.|+.-+++... -|+.||.++
T Consensus 1 ~Cp~CG~~~~~~~~----fC~~CG~~l 23 (23)
T PF13240_consen 1 YCPNCGAEIEDDAK----FCPNCGTPL 23 (23)
T ss_pred CCcccCCCCCCcCc----chhhhCCcC
Confidence 68888888876544 377888764
No 157
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=62.06 E-value=3.6 Score=37.15 Aligned_cols=56 Identities=13% Similarity=0.024 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHCCCEEEeCcceeecCCCCcccccc-ccccCCCccCCCCccEEEEeee
Q psy7914 288 WTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADE-QVDEQGISWRSGARVEKRRLSQ 344 (365)
Q Consensus 288 ~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~-eve~~~~c~~~g~~~e~~~~~~ 344 (365)
.+..++++|..+ +=+......|-||.|...+|-. .++.+..||.||+.++......
T Consensus 93 ~~~~~le~Lk~~-le~~~~~~~y~C~~~~~r~sfdeA~~~~F~Cp~Cg~~L~~~d~s~ 149 (176)
T COG1675 93 KKRKILEKLKRK-LEKETENNYYVCPNCHVKYSFDEAMELGFTCPKCGEDLEEYDSSE 149 (176)
T ss_pred HHHHHHHHHHHH-HHhhccCCceeCCCCCCcccHHHHHHhCCCCCCCCchhhhccchH
Confidence 344455555443 2234555667899999888744 4567889999999998655443
No 158
>PRK12496 hypothetical protein; Provisional
Probab=61.66 E-value=4.8 Score=35.88 Aligned_cols=32 Identities=6% Similarity=0.009 Sum_probs=22.8
Q ss_pred eeecCCCCccccccccccCCCccCCCCccEEEEe
Q psy7914 309 VNWDPIDNTVLADEQVDEQGISWRSGARVEKRRL 342 (365)
Q Consensus 309 v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~ 342 (365)
.+.|+.|++..+...- ...|+.||+++..+..
T Consensus 127 ~~~C~gC~~~~~~~~~--~~~C~~CG~~~~r~~~ 158 (164)
T PRK12496 127 RKVCKGCKKKYPEDYP--DDVCEICGSPVKRKMV 158 (164)
T ss_pred eEECCCCCccccCCCC--CCcCCCCCChhhhcch
Confidence 4679999988764332 2359999999876543
No 159
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=59.09 E-value=12 Score=41.83 Aligned_cols=59 Identities=29% Similarity=0.474 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeeeEeCchhHHHHHhhhc
Q psy7914 288 WTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDS 361 (365)
Q Consensus 288 ~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~~ 361 (365)
.-..+++.|.++|++....... . ..|.|.+||.++|.+.++||||+++++++++.++..
T Consensus 316 ar~~i~~~L~~~g~l~~~~~~~--------------~-~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~~~~ 374 (861)
T TIGR00422 316 ARKKIVEDLKEEGLLVKIEPHT--------------H-NVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAAE 374 (861)
T ss_pred hHHHHHHHHHhCCCeeeeeeee--------------c-cCCEeCCCCCEEEEEecCcceEecHHHHHHHHHHhh
Confidence 3367778888888876432110 0 236788999999999999999999999999888764
No 160
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=54.62 E-value=19 Score=40.25 Aligned_cols=58 Identities=10% Similarity=-0.024 Sum_probs=39.2
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceEEEecCccc----cccccccccCcceeEEEccchhh
Q psy7914 53 VRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHI----LASKTKEKLTENVKHQIENKYKS 126 (365)
Q Consensus 53 ~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f~~l~~~h~----l~~~~~a~~~gf~n~~i~n~~~~ 126 (365)
..|.|++.+. ++.|.|=||||+++++.. .+++.|+++ |+...+.. |+.|..|---...
T Consensus 197 ~~i~y~l~~~----------~~~i~VATTRPEtmlgdt----AVaVhP~DeRYk~LvGk~v~l--Pl~~r~IpIiaD~ 258 (877)
T COG0525 197 YYIKYPLADG----------DGYLVVATTRPETLLGDT----AVAVHPDDERYKHLVGKEVIL--PLVGREIPIIADE 258 (877)
T ss_pred EEEEEecCCC----------CceEEEEecCccccccce----EEEECCCChhhHhhcCCEEec--CCCCCeeeeecCc
Confidence 3566666542 346999999999999999 999998764 45455554 4555444443433
No 161
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=52.96 E-value=13 Score=25.67 Aligned_cols=37 Identities=5% Similarity=-0.218 Sum_probs=25.8
Q ss_pred eeecCCCCccccccccccCCCccCCCCccEEEEeeee
Q psy7914 309 VNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQW 345 (365)
Q Consensus 309 v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ 345 (365)
.+-|++|+..+.-.+-....+|+.||+++........
T Consensus 3 ~y~C~~CG~~~~~~~~~~~~~Cp~CG~~~~~~~~~~~ 39 (46)
T PRK00398 3 EYKCARCGREVELDEYGTGVRCPYCGYRILFKERPPV 39 (46)
T ss_pred EEECCCCCCEEEECCCCCceECCCCCCeEEEccCCCc
Confidence 4669999986654443236789999999887655443
No 162
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=51.98 E-value=15 Score=39.95 Aligned_cols=36 Identities=14% Similarity=-0.003 Sum_probs=21.2
Q ss_pred EecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEec
Q psy7914 191 LSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQP 229 (365)
Q Consensus 191 ~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~ 229 (365)
....--|||.|||||. +++=+-.+.+...|++|.+.
T Consensus 35 v~sGi~PTG~lHLGng---~~~aik~~~~~q~g~~~~~l 70 (682)
T PTZ00348 35 CYDGFEPSGRMHIAQG---IFKAVNVNKCTQAGCEFVFW 70 (682)
T ss_pred EEEeeCCCCcCeeccH---HHHHHHHHHHHhCCCeEEEE
Confidence 4445568999999993 23311122234568887554
No 163
>KOG2713|consensus
Probab=50.86 E-value=48 Score=32.45 Aligned_cols=71 Identities=17% Similarity=0.042 Sum_probs=40.3
Q ss_pred CCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914 194 FPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN 273 (365)
Q Consensus 194 ~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D 273 (365)
.--|||.+|+|+..|++-.-+----.+..|-.|++. =+|-|-. ..+.+|.++. +..-..-..|-+-||...
T Consensus 19 GIQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~-vvDlHaI-------Tvp~dp~~lr-q~~~dm~A~lLAcGIdp~ 89 (347)
T KOG2713|consen 19 GIQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFS-VVDLHAI-------TVPQDPAELR-QATHDMAASLLACGIDPE 89 (347)
T ss_pred ccCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEE-Eeeceee-------cCCCChHHHH-HHHHHHHHHHHHhccCcc
Confidence 345899999999999876544333233344444433 3444432 2345555443 334444556666788665
No 164
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=49.84 E-value=8.4 Score=23.44 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=16.3
Q ss_pred eecCCCCccccccccccCCCccCCCCcc
Q psy7914 310 NWDPIDNTVLADEQVDEQGISWRSGARV 337 (365)
Q Consensus 310 ~yc~~~~t~Ls~~eve~~~~c~~~g~~~ 337 (365)
.+|++|+..+++..- .|+.||.++
T Consensus 3 ~~Cp~Cg~~~~~~~~----fC~~CG~~L 26 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAK----FCPNCGAKL 26 (26)
T ss_pred CCCcccCCcCCcccc----cChhhCCCC
Confidence 478899987655433 477888763
No 165
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=49.31 E-value=12 Score=27.26 Aligned_cols=43 Identities=21% Similarity=0.097 Sum_probs=27.5
Q ss_pred ecCCCCccccccccc--cCCCccCCCCccEEEEeeeeeEeCchhHHH
Q psy7914 311 WDPIDNTVLADEQVD--EQGISWRSGARVEKRRLSQWFIRTTRLANL 355 (365)
Q Consensus 311 yc~~~~t~Ls~~eve--~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~ 355 (365)
=||.|+..+.=.+.. .--.|+.||..+|.+.... ++|....+.
T Consensus 4 ~CP~CG~~iev~~~~~GeiV~Cp~CGaeleVv~~~p--~~L~~ap~~ 48 (54)
T TIGR01206 4 ECPDCGAEIELENPELGELVICDECGAELEVVSLDP--LRLEAAPEE 48 (54)
T ss_pred CCCCCCCEEecCCCccCCEEeCCCCCCEEEEEeCCC--CEEEeCccc
Confidence 488888865422211 1126999999999988887 555444433
No 166
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=47.69 E-value=12 Score=33.30 Aligned_cols=20 Identities=15% Similarity=0.054 Sum_probs=16.3
Q ss_pred eCcceeecCCCCcccccccc
Q psy7914 305 KEATVNWDPIDNTVLADEQV 324 (365)
Q Consensus 305 ~~~~v~yc~~~~t~Ls~~ev 324 (365)
.++-.|||+.|...|.+.++
T Consensus 110 ~d~~~wyc~~c~~~~~e~~f 129 (159)
T TIGR03037 110 LDGFQWFCPQCGHKLHRAEV 129 (159)
T ss_pred CcceEEECCCCCCeEEEEEE
Confidence 46667999999999987665
No 167
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=46.25 E-value=16 Score=24.20 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=22.4
Q ss_pred eecCCCCcccccccc--ccCCCccCCCCccEEE
Q psy7914 310 NWDPIDNTVLADEQV--DEQGISWRSGARVEKR 340 (365)
Q Consensus 310 ~yc~~~~t~Ls~~ev--e~~~~c~~~g~~~e~~ 340 (365)
+.|+.|+......+- ...++|..||.++..|
T Consensus 2 r~C~~Cg~~Yh~~~~pP~~~~~Cd~cg~~L~qR 34 (36)
T PF05191_consen 2 RICPKCGRIYHIEFNPPKVEGVCDNCGGELVQR 34 (36)
T ss_dssp EEETTTTEEEETTTB--SSTTBCTTTTEBEBEE
T ss_pred cCcCCCCCccccccCCCCCCCccCCCCCeeEeC
Confidence 468888887665443 2468899999987765
No 168
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=45.66 E-value=8.5 Score=38.71 Aligned_cols=111 Identities=11% Similarity=0.017 Sum_probs=55.8
Q ss_pred HhhHHHHHHHHCCCcEEeccCCCCC---CchHHHHHHHcCCCH------HHHH-HHHHHHHHHHHHhcCCCcc-------
Q psy7914 211 ISDTLARYYAMNGKNVFQPMGWDAF---GLPAENAAHQHGIDP------REWT-VGNIATMKSQLQGFGCKFN------- 273 (365)
Q Consensus 211 ~~DvlaR~lr~~G~~V~~~~g~Dd~---G~~I~~~A~~~g~~~------~e~~-~~~~~~i~~~l~~lgI~~D------- 273 (365)
+.|.-.|-.+..| ++-++.||-+ |.......++.+..+ .|.. .-.+..+-+...+++..+.
T Consensus 136 FlDaA~~s~~~~G--~l~vTATD~a~L~G~~p~~c~rkY~a~~~~~~~~hE~glR~Lig~vaR~AAkyd~~i~Plls~~~ 213 (380)
T COG1867 136 FLDAALRSVRRGG--LLCVTATDTAPLCGSYPRKCRRKYGAVPLKTEFCHEVGLRILIGYVARTAAKYDKAIEPLLSLSI 213 (380)
T ss_pred HHHHHHHHhhcCC--EEEEEecccccccCCChHHHHHHhccccCCCcchhHHHHHHHHHHHHHHHHhhcccceeEEEeee
Confidence 4566666555555 4556666653 554444444443322 3333 4444556666666666543
Q ss_pred --CCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCC
Q psy7914 274 --WESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGA 335 (365)
Q Consensus 274 --~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~ 335 (365)
|.+.+.-....-. .+.++ +. +.+.++||+.|+ .+...+.+.+.+|+.||.
T Consensus 214 dhY~Rvfv~v~rga~-~ad~~---~e-------~~g~~~~c~~cg-~~~~~~~~~~~~c~~Cg~ 265 (380)
T COG1867 214 DHYVRVFVEVRRGAR-RADKL---LE-------NLGYIYHCSRCG-EIVGSFREVDEKCPHCGG 265 (380)
T ss_pred ceEEEEEEEEccCch-hHHHH---HH-------hcCcEEEccccc-ceecccccccccCCcccc
Confidence 1111111111111 11222 22 334566999998 333334445789999996
No 169
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=44.76 E-value=39 Score=33.80 Aligned_cols=56 Identities=20% Similarity=0.086 Sum_probs=40.2
Q ss_pred CcceeecCCCCccccccccccCCCccCCCCccEEEEeeeeeEeCchhHHHHHhhhcccCC
Q psy7914 306 EATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDSVSAL 365 (365)
Q Consensus 306 ~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~~~~~~ 365 (365)
+..+|=|+.|..+ +.+. ..+.|+.||.+.++.+. .=|.+-+-+.-.++-+.|-+||
T Consensus 54 d~~i~kC~~c~~~--~~y~-~~~~C~~cg~~~~l~R~-VSfVDaPGHe~LMATMLsGAAl 109 (415)
T COG5257 54 DAKIYKCPECYRP--ECYT-TEPKCPNCGAETELVRR-VSFVDAPGHETLMATMLSGAAL 109 (415)
T ss_pred cCceEeCCCCCCC--cccc-cCCCCCCCCCCccEEEE-EEEeeCCchHHHHHHHhcchhh
Confidence 4567889999876 3333 47899999999976553 4577877777777777666553
No 170
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=44.73 E-value=14 Score=22.41 Aligned_cols=24 Identities=8% Similarity=-0.205 Sum_probs=15.3
Q ss_pred cCCCCccccccccccCCCccCCCC
Q psy7914 312 DPIDNTVLADEQVDEQGISWRSGA 335 (365)
Q Consensus 312 c~~~~t~Ls~~eve~~~~c~~~g~ 335 (365)
|.+|+..|+.++--..-.||.||.
T Consensus 1 C~sC~~~i~~r~~~v~f~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPFPCPNCGF 24 (24)
T ss_pred CccCCCcccCcccCceEeCCCCCC
Confidence 556777777766434556777773
No 171
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=44.40 E-value=1.1e+02 Score=26.10 Aligned_cols=21 Identities=24% Similarity=0.108 Sum_probs=18.0
Q ss_pred hhHHHHHHHHCCCcEEeccCC
Q psy7914 212 SDTLARYYAMNGKNVFQPMGW 232 (365)
Q Consensus 212 ~DvlaR~lr~~G~~V~~~~g~ 232 (365)
+++++++++..|++|...-..
T Consensus 19 ~~iv~~~l~~~GfeVi~lg~~ 39 (132)
T TIGR00640 19 AKVIATAYADLGFDVDVGPLF 39 (132)
T ss_pred HHHHHHHHHhCCcEEEECCCC
Confidence 588999999999999987554
No 172
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=42.48 E-value=15 Score=33.22 Aligned_cols=36 Identities=11% Similarity=-0.019 Sum_probs=26.4
Q ss_pred eCcceeecCCCCccccccccc-------------------cCCCccCCCCccEEE
Q psy7914 305 KEATVNWDPIDNTVLADEQVD-------------------EQGISWRSGARVEKR 340 (365)
Q Consensus 305 ~~~~v~yc~~~~t~Ls~~eve-------------------~~~~c~~~g~~~e~~ 340 (365)
.++-.|||..|+..|.+.++. ..-.|+.||.....+
T Consensus 116 ~d~~~wyc~~c~~~~~e~~f~~~d~~~~~~~~~~~f~~~~e~rtC~~CG~v~~~~ 170 (177)
T PRK13264 116 LDGFQWYCDECNHKVHEVEVQLTDIETDLPPVFAAFYASEELRTCDNCGTVHPGK 170 (177)
T ss_pred ccceEEECCCCCCeEEEEEEEecChhhhhHHHHHHHhcCHhhccCCcCCcccCcc
Confidence 456679999999999876653 123799999865543
No 173
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=41.92 E-value=35 Score=28.75 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=31.2
Q ss_pred CEEEeCcceeecCCCCccccccccccCCCccCCCC-ccEEEEeeeeeE
Q psy7914 301 LVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGA-RVEKRRLSQWFI 347 (365)
Q Consensus 301 ~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~-~~e~~~~~~~ff 347 (365)
+..+......||..|+.++...... ..||.||+ .+....-+.+.+
T Consensus 62 l~Ie~~p~~~~C~~C~~~~~~e~~~--~~CP~C~s~~~~i~~G~el~i 107 (115)
T COG0375 62 LHIEEEPAECWCLDCGQEVELEELD--YRCPKCGSINLRIIGGDELII 107 (115)
T ss_pred EEEEEeccEEEeccCCCeecchhhe--eECCCCCCCceEEecCCeeEE
Confidence 4555667789999998887776663 44999996 455555555444
No 174
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=41.31 E-value=38 Score=32.35 Aligned_cols=41 Identities=17% Similarity=0.035 Sum_probs=26.7
Q ss_pred eCcceeecCCCCcccccccccc------CCCccCCCCccEEEEeeeee
Q psy7914 305 KEATVNWDPIDNTVLADEQVDE------QGISWRSGARVEKRRLSQWF 346 (365)
Q Consensus 305 ~~~~v~yc~~~~t~Ls~~eve~------~~~c~~~g~~~e~~~~~~~f 346 (365)
+.-..++|..|+......++.. =|+|+.||.+ ..|+--.||
T Consensus 118 Gsl~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cg~~-~lrP~VV~f 164 (250)
T COG0846 118 GSLKRVRCSKCGNQYYDEDVIKFIEDGLIPRCPKCGGP-VLRPDVVWF 164 (250)
T ss_pred cceeeeEeCCCcCccchhhhhhhcccCCCCcCccCCCc-cccCCEEEe
Confidence 3445589999986666444321 2679999997 445555555
No 175
>PF14369 zf-RING_3: zinc-finger
Probab=40.27 E-value=23 Score=23.30 Aligned_cols=28 Identities=11% Similarity=0.012 Sum_probs=19.2
Q ss_pred eeecCCCCccccccccccCC-CccCCCCc
Q psy7914 309 VNWDPIDNTVLADEQVDEQG-ISWRSGAR 336 (365)
Q Consensus 309 v~yc~~~~t~Ls~~eve~~~-~c~~~g~~ 336 (365)
.|||-.|+++++-....... .||.|+.-
T Consensus 2 ~ywCh~C~~~V~~~~~~~~~~~CP~C~~g 30 (35)
T PF14369_consen 2 RYWCHQCNRFVRIAPSPDSDVACPRCHGG 30 (35)
T ss_pred CEeCccCCCEeEeCcCCCCCcCCcCCCCc
Confidence 47999999888754332233 48888863
No 176
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=39.15 E-value=1e+02 Score=28.77 Aligned_cols=107 Identities=15% Similarity=0.176 Sum_probs=56.0
Q ss_pred eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 267 (365)
Q Consensus 188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~ 267 (365)
+++.+..++++|.+++.+-... + +.+.+..+..|.+|+...|-...+.... +. .++ +-.+.+.+.+.+.+++
T Consensus 26 v~~~f~~i~~~G~l~~~~~~~~-~-~~~~~~~~~~~~kvl~sigg~~~~~~~~--~~---~~~-~~r~~fi~~lv~~~~~ 97 (253)
T cd06545 26 INLAFANPDANGTLNANPVRSE-L-NSVVNAAHAHNVKILISLAGGSPPEFTA--AL---NDP-AKRKALVDKIINYVVS 97 (253)
T ss_pred EEEEEEEECCCCeEEecCcHHH-H-HHHHHHHHhCCCEEEEEEcCCCCCcchh--hh---cCH-HHHHHHHHHHHHHHHH
Confidence 3444557788898888532211 1 2233444667888887666443332111 10 111 1122333444444444
Q ss_pred c---CCCccCCCcccccChhhHHHHHHHHHHHHHCCCEE
Q psy7914 268 F---GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVY 303 (365)
Q Consensus 268 l---gI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy 303 (365)
. ||.+||...... ...+...++++-..|.+.|++-
T Consensus 98 ~~~DGIdiDwE~~~~~-~~~~~~fv~~Lr~~l~~~~~~l 135 (253)
T cd06545 98 YNLDGIDVDLEGPDVT-FGDYLVFIRALYAALKKEGKLL 135 (253)
T ss_pred hCCCceeEEeeccCcc-HhHHHHHHHHHHHHHhhcCcEE
Confidence 4 677786433222 3567777888877787767643
No 177
>cd01675 RNR_III Class III ribonucleotide reductase. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in strict or facultative anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). The class III enzyme from phage T4 consists of two subunits, this model covers the larger subunit w
Probab=37.90 E-value=61 Score=34.49 Aligned_cols=48 Identities=13% Similarity=0.041 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHCCCEE-EeCcceeecCCCCccccccccccCCCccCCCCc
Q psy7914 285 YYKWTQALFLDLYHAGLVY-RKEATVNWDPIDNTVLADEQVDEQGISWRSGAR 336 (365)
Q Consensus 285 ~~~~v~~~f~~L~~kG~Iy-~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~ 336 (365)
..+.+.++++...++|.+| .-..+...|..|+..- .. ..-.||.||+.
T Consensus 493 n~~al~~lv~~a~~~~~~y~~~~~p~~~C~~CG~~~-~~---~~~~CP~CGs~ 541 (555)
T cd01675 493 NPEALEALVKKAAKRGVIYFGINTPIDICNDCGYIG-EG---EGFKCPKCGSE 541 (555)
T ss_pred CHHHHHHHHHHHHHcCCceEEEecCCccCCCCCCCC-cC---CCCCCcCCCCc
Confidence 4677899999999998887 5566677999999632 22 23469999975
No 178
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=37.24 E-value=49 Score=27.49 Aligned_cols=45 Identities=9% Similarity=-0.039 Sum_probs=28.3
Q ss_pred CEEEeCcceeecCCCCccccccccccCCCccCCCCc-cEEEEeeeeeE
Q psy7914 301 LVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGAR-VEKRRLSQWFI 347 (365)
Q Consensus 301 ~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~-~e~~~~~~~ff 347 (365)
+..+......+|..|+...+-.+. ...||.||+. ++...-+-+++
T Consensus 62 L~I~~vp~~~~C~~Cg~~~~~~~~--~~~CP~Cgs~~~~i~~G~El~i 107 (113)
T PRK12380 62 LHIVYKPAQAWCWDCSQVVEIHQH--DAQCPHCHGERLRVDTGDSLIV 107 (113)
T ss_pred EEEEeeCcEEEcccCCCEEecCCc--CccCcCCCCCCcEEccCCeEEE
Confidence 344556677999999965544433 3459999984 45554444443
No 179
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=37.05 E-value=38 Score=30.68 Aligned_cols=38 Identities=5% Similarity=0.049 Sum_probs=27.2
Q ss_pred EEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEee
Q psy7914 302 VYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLS 343 (365)
Q Consensus 302 Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~ 343 (365)
|.+....++=|..|.+.++ +....|+.||+++..+...
T Consensus 132 I~~v~~w~~rC~GC~~~f~----~~~~~Cp~CG~~~~~~~~~ 169 (177)
T COG1439 132 IKKVRKWRLRCHGCKRIFP----EPKDFCPICGSPLKRKRVK 169 (177)
T ss_pred cceEeeeeEEEecCceecC----CCCCcCCCCCCceEEeeec
Confidence 4444455677999999888 2345699999998766543
No 180
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=37.02 E-value=56 Score=28.57 Aligned_cols=27 Identities=30% Similarity=0.246 Sum_probs=21.7
Q ss_pred HHHHHHHHhhHHHHHHHHCCCcEEeccCCC
Q psy7914 204 GHVRVYTISDTLARYYAMNGKNVFQPMGWD 233 (365)
Q Consensus 204 GHar~~v~~DvlaR~lr~~G~~V~~~~g~D 233 (365)
||-|++ .+++|.++-.|++|.......
T Consensus 24 gHd~ga---kvia~~l~d~GfeVi~~g~~~ 50 (143)
T COG2185 24 GHDRGA---KVIARALADAGFEVINLGLFQ 50 (143)
T ss_pred ccccch---HHHHHHHHhCCceEEecCCcC
Confidence 788774 678999999999999875544
No 181
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=36.63 E-value=2.1e+02 Score=23.63 Aligned_cols=30 Identities=23% Similarity=0.068 Sum_probs=20.5
Q ss_pred CCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCC
Q psy7914 197 PSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGW 232 (365)
Q Consensus 197 pnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~ 232 (365)
+.|..| -. -..+++.+++..|++|.+.-..
T Consensus 7 ~~gd~H---~l---G~~~~~~~l~~~G~~vi~lG~~ 36 (122)
T cd02071 7 PGLDGH---DR---GAKVIARALRDAGFEVIYTGLR 36 (122)
T ss_pred cCCChh---HH---HHHHHHHHHHHCCCEEEECCCC
Confidence 456666 22 2356777899999999987443
No 182
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=36.24 E-value=35 Score=27.40 Aligned_cols=14 Identities=43% Similarity=0.807 Sum_probs=10.9
Q ss_pred CCCCCCCCchHHHHH
Q psy7914 194 FPYPSGSLHMGHVRV 208 (365)
Q Consensus 194 ~PnpnG~LHiGHar~ 208 (365)
+.++ ||+|+||...
T Consensus 5 ~G~F-dp~H~GH~~l 18 (105)
T cd02156 5 PGEP-GYLHIGHAKL 18 (105)
T ss_pred CCCC-CCCCHHHHHH
Confidence 4445 9999999875
No 183
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=36.22 E-value=1.5e+02 Score=24.26 Aligned_cols=48 Identities=15% Similarity=0.075 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHCCCEEEeC---cceeecCCCCccccccccccCCCccCCCCccEE
Q psy7914 286 YKWTQALFLDLYHAGLVYRKE---ATVNWDPIDNTVLADEQVDEQGISWRSGARVEK 339 (365)
Q Consensus 286 ~~~v~~~f~~L~~kG~Iy~~~---~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~ 339 (365)
...|-+.++.|.+.|+|.+-. +..+|+... ..-. ..-.|..||...+.
T Consensus 42 ~~TVYR~L~~L~e~Gli~~~~~~~~~~~Y~~~~-~~~h-----~h~iC~~Cg~v~~~ 92 (120)
T PF01475_consen 42 LATVYRTLDLLEEAGLIRKIEFGDGESRYELST-CHHH-----HHFICTQCGKVIDL 92 (120)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEETTSEEEEEESS-SSSC-----EEEEETTTS-EEEE
T ss_pred HHHHHHHHHHHHHCCeEEEEEcCCCcceEeecC-CCcc-----eEEEECCCCCEEEe
Confidence 345678899999999998744 456777665 1111 12358999987765
No 184
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.41 E-value=15 Score=27.68 Aligned_cols=18 Identities=17% Similarity=-0.097 Sum_probs=13.9
Q ss_pred CCccCCCCccEEEEeeee
Q psy7914 328 GISWRSGARVEKRRLSQW 345 (365)
Q Consensus 328 ~~c~~~g~~~e~~~~~~~ 345 (365)
-.|+.||.+++|.++..+
T Consensus 8 v~CP~Cgkpv~w~~~s~f 25 (65)
T COG3024 8 VPCPTCGKPVVWGEESPF 25 (65)
T ss_pred ccCCCCCCcccccccCCc
Confidence 469999999998665443
No 185
>PRK13794 hypothetical protein; Provisional
Probab=34.00 E-value=30 Score=36.14 Aligned_cols=34 Identities=12% Similarity=0.144 Sum_probs=24.8
Q ss_pred EEEeCcceeecCCCCccccccccccCCCccCCCCccEEEE
Q psy7914 302 VYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRR 341 (365)
Q Consensus 302 Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~ 341 (365)
+|.+...++||..|+.+|- ..+|..||.+....+
T Consensus 3 ~~~~~~~~~wc~~cn~p~~------~~~c~~cg~~~~~~~ 36 (479)
T PRK13794 3 TYLGKIHLKWCDNCNVPVL------GKKCAICGSETREVK 36 (479)
T ss_pred ceecceEEEEcCCCCCeec------CCchhHhCCCeeEEe
Confidence 4667778999999999864 456888888644443
No 186
>COG3171 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.33 E-value=1.1e+02 Score=25.77 Aligned_cols=56 Identities=11% Similarity=0.136 Sum_probs=39.8
Q ss_pred HHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHC-CCEEEeCcce-eecCCCCc
Q psy7914 262 KSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHA-GLVYRKEATV-NWDPIDNT 317 (365)
Q Consensus 262 ~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~k-G~Iy~~~~~v-~yc~~~~t 317 (365)
...++.||.++.|..--.|......+.+..++..+++. |+.|.+.+.. |.+.-|-.
T Consensus 23 l~EFQeLgF~v~~~~~eg~~ae~~dea~drFidevI~~Ngl~~~G~~~~~~~glvcl~ 80 (119)
T COG3171 23 LGEFQELGFSVQWSFHEGTSAEDVDEAVDRFIDEVIAPNGLAFAGSGYLDWEGLVCLQ 80 (119)
T ss_pred HHHHHhhheeeEEEecCCccHHHHHHHHHHHHHHHHccCceeEcCCcceeeeeeehHh
Confidence 44577889988876555566667778888888888875 9999887544 55555543
No 187
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=32.16 E-value=2.3e+02 Score=24.98 Aligned_cols=104 Identities=19% Similarity=0.174 Sum_probs=49.7
Q ss_pred ecCCCCCCCCch-HHHHHHHHhhHHHHHHHH-CCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc-
Q psy7914 192 SMFPYPSGSLHM-GHVRVYTISDTLARYYAM-NGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF- 268 (365)
Q Consensus 192 ~~~PnpnG~LHi-GHar~~v~~DvlaR~lr~-~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l- 268 (365)
...++++|.+.. +..........+.+..+. .|.+|....|-...+... ..+ .+ .+..+.+.+.+.+.+++.
T Consensus 31 f~~v~~~~~~~~~~~~~~~~~~~~i~~l~~~~~g~kv~~sigg~~~~~~~-~~~----~~-~~~~~~f~~~~~~~v~~~~ 104 (210)
T cd00598 31 FAEISSDGSLNLFGDKSEEPLKGALEELASKKPGLKVLISIGGWTDSSPF-TLA----SD-PASRAAFANSLVSFLKTYG 104 (210)
T ss_pred eEEECCCCCEecccCcccHHHHHHHHHHHHhCCCCEEEEEEcCCCCCCCc-hhh----cC-HHHHHHHHHHHHHHHHHcC
Confidence 445666766542 111222334445554443 388888777754444322 000 11 122344455555555555
Q ss_pred --CCCccCCCccccc---ChhhHHHHHHHHHHHHHCCC
Q psy7914 269 --GCKFNWESELATC---DPKYYKWTQALFLDLYHAGL 301 (365)
Q Consensus 269 --gI~~D~~~~~~t~---d~~~~~~v~~~f~~L~~kG~ 301 (365)
||.+||....... ...+...++++-.+|.++++
T Consensus 105 ~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~~~~ 142 (210)
T cd00598 105 FDGVDIDWEYPGAADNSDRENFITLLRELRSALGAANY 142 (210)
T ss_pred CCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhcccCc
Confidence 6777865443322 14455555555555544444
No 188
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=32.00 E-value=22 Score=24.74 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=18.9
Q ss_pred ecCCCCcccccccccc--CCCccCCCCc
Q psy7914 311 WDPIDNTVLADEQVDE--QGISWRSGAR 336 (365)
Q Consensus 311 yc~~~~t~Ls~~eve~--~~~c~~~g~~ 336 (365)
|||.|+..|...+.+. --.|+.||..
T Consensus 2 FCp~Cg~~l~~~~~~~~~~~vC~~Cg~~ 29 (52)
T smart00661 2 FCPKCGNMLIPKEGKEKRRFVCRKCGYE 29 (52)
T ss_pred CCCCCCCccccccCCCCCEEECCcCCCe
Confidence 7999999887665532 2468888864
No 189
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=31.56 E-value=36 Score=24.30 Aligned_cols=37 Identities=8% Similarity=-0.166 Sum_probs=26.9
Q ss_pred cceeecCCCCccccccccccCCCccCCCCccEEEEee
Q psy7914 307 ATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLS 343 (365)
Q Consensus 307 ~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~ 343 (365)
...|-|..|+.-+...+..-.-+|+.||+.+-.++..
T Consensus 4 ~~~Y~C~~Cg~~~~~~~~~~~irCp~Cg~rIl~K~R~ 40 (49)
T COG1996 4 MMEYKCARCGREVELDQETRGIRCPYCGSRILVKERP 40 (49)
T ss_pred eEEEEhhhcCCeeehhhccCceeCCCCCcEEEEeccC
Confidence 3467799999988545554456899999987665543
No 190
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=31.49 E-value=79 Score=26.44 Aligned_cols=44 Identities=11% Similarity=-0.006 Sum_probs=27.7
Q ss_pred EEeCcceeecCCCCccccccccccCCCccCCCCc-cEEEEeeeeeE
Q psy7914 303 YRKEATVNWDPIDNTVLADEQVDEQGISWRSGAR-VEKRRLSQWFI 347 (365)
Q Consensus 303 y~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~-~e~~~~~~~ff 347 (365)
.+......+|..|+...+-.+.. -.+||.||++ ++...-+-+++
T Consensus 65 Ie~vp~~~~C~~Cg~~~~~~~~~-~~~CP~Cgs~~~~i~~G~El~I 109 (117)
T PRK00564 65 IVDEKVELECKDCSHVFKPNALD-YGVCEKCHSKNVIITQGNEMRL 109 (117)
T ss_pred EEecCCEEEhhhCCCccccCCcc-CCcCcCCCCCceEEecCCEEEE
Confidence 34556779999999665554331 2469999985 45554444443
No 191
>TIGR00375 conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.
Probab=31.45 E-value=24 Score=35.68 Aligned_cols=33 Identities=9% Similarity=-0.054 Sum_probs=25.0
Q ss_pred eCcceeecCCCCcccccccc-ccCCCccCCCCccE
Q psy7914 305 KEATVNWDPIDNTVLADEQV-DEQGISWRSGARVE 338 (365)
Q Consensus 305 ~~~~v~yc~~~~t~Ls~~ev-e~~~~c~~~g~~~e 338 (365)
+++..=+|-.|++.+...+- ..+++|+ ||.++.
T Consensus 236 GKYh~~~c~~C~~~~~~~~~~~~~~~Cp-CG~~i~ 269 (374)
T TIGR00375 236 GKYHQTACEACGEPAVSEDAETACANCP-CGGRIK 269 (374)
T ss_pred CccchhhhcccCCcCCchhhhhcCCCCC-CCCcce
Confidence 44445579999999987774 3689999 999843
No 192
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=31.44 E-value=21 Score=32.05 Aligned_cols=37 Identities=22% Similarity=0.187 Sum_probs=30.4
Q ss_pred CCCCCc-hHHHHHHHHhhHHHHHHHHCCCcEEeccCCC
Q psy7914 197 PSGSLH-MGHVRVYTISDTLARYYAMNGKNVFQPMGWD 233 (365)
Q Consensus 197 pnG~LH-iGHar~~v~~DvlaR~lr~~G~~V~~~~g~D 233 (365)
|+||.+ +||-.|.+++=.+||.|+..|+.|..+.=+|
T Consensus 64 ~~gp~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD 101 (229)
T PF00975_consen 64 PEGPYVLAGWSFGGILAFEMARQLEEAGEEVSRLILID 101 (229)
T ss_dssp SSSSEEEEEETHHHHHHHHHHHHHHHTT-SESEEEEES
T ss_pred CCCCeeehccCccHHHHHHHHHHHHHhhhccCceEEec
Confidence 556666 5999999999999999999999997776666
No 193
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=30.88 E-value=81 Score=25.12 Aligned_cols=30 Identities=7% Similarity=-0.016 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHCCCEEEeCcceeecCCC
Q psy7914 286 YKWTQALFLDLYHAGLVYRKEATVNWDPID 315 (365)
Q Consensus 286 ~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~ 315 (365)
...|.+++.+|.++|+|.+..+...+|.+.
T Consensus 61 r~tVsr~L~~Le~~GlI~r~~~~~~~~~n~ 90 (95)
T TIGR01610 61 RTHVSDAIKSLARRRIIFRQGMMGIVGVNT 90 (95)
T ss_pred HHHHHHHHHHHHHCCCeeeecCCceeecCC
Confidence 457899999999999999988888888764
No 194
>COG2995 PqiA Uncharacterized paraquat-inducible protein A [Function unknown]
Probab=30.78 E-value=25 Score=35.70 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=24.1
Q ss_pred eeecCCCCccccccccccCCCccCCCCccEEEEee
Q psy7914 309 VNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLS 343 (365)
Q Consensus 309 v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~ 343 (365)
.-.|..|+.....+ .+++|++||.+.-.|+..
T Consensus 220 ~~~C~~C~~~~~~~---~~~~CpRC~~~Ly~rr~~ 251 (418)
T COG2995 220 LRSCLCCHYILPHD---AEPRCPRCGSKLYVRRRN 251 (418)
T ss_pred ceecccccccCCHh---hCCCCCCCCChhhccChh
Confidence 44688888777665 578999999998766543
No 195
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=30.68 E-value=69 Score=26.66 Aligned_cols=44 Identities=2% Similarity=-0.159 Sum_probs=26.8
Q ss_pred EEEeCcceeecCCCCccccccccccCCCccCCCCc-cEEEEeeeee
Q psy7914 302 VYRKEATVNWDPIDNTVLADEQVDEQGISWRSGAR-VEKRRLSQWF 346 (365)
Q Consensus 302 Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~-~e~~~~~~~f 346 (365)
..+......+|..|+...+..+.. -..||.||+. ++...-+-+.
T Consensus 63 ~i~~~p~~~~C~~Cg~~~~~~~~~-~~~CP~Cgs~~~~i~~G~El~ 107 (114)
T PRK03681 63 HLEEQEAECWCETCQQYVTLLTQR-VRRCPQCHGDMLRIVADDGLQ 107 (114)
T ss_pred EEEeeCcEEEcccCCCeeecCCcc-CCcCcCcCCCCcEEccCCeEE
Confidence 344556779999999766544321 1359999985 4544443333
No 196
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=30.23 E-value=42 Score=24.43 Aligned_cols=45 Identities=27% Similarity=0.361 Sum_probs=29.5
Q ss_pred HhhHHHHHHHHCCCcEEeccCCC--CCC-chHHHHHHHcCCCHHHHHHHH
Q psy7914 211 ISDTLARYYAMNGKNVFQPMGWD--AFG-LPAENAAHQHGIDPREWTVGN 257 (365)
Q Consensus 211 ~~DvlaR~lr~~G~~V~~~~g~D--d~G-~~I~~~A~~~g~~~~e~~~~~ 257 (365)
++|+++.+-+. -.|+..+|+| |+| .++..++.+.|+++.++.++.
T Consensus 5 Vgeiv~~~p~~--a~vf~~~gIDfCCgG~~~L~eA~~~~~ld~~~vl~~L 52 (56)
T PF04405_consen 5 VGEIVAEDPRA--ARVFRKYGIDFCCGGNRSLEEACEEKGLDPEEVLEEL 52 (56)
T ss_pred HHHHHHHChHH--HHHHHHcCCcccCCCCchHHHHHHHcCCCHHHHHHHH
Confidence 45555554433 2455566666 466 788888889999998776543
No 197
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=30.19 E-value=49 Score=34.66 Aligned_cols=39 Identities=8% Similarity=-0.156 Sum_probs=29.6
Q ss_pred eCcceeecCCCCccccccccc--------cCCCccCCCCccEEEEee
Q psy7914 305 KEATVNWDPIDNTVLADEQVD--------EQGISWRSGARVEKRRLS 343 (365)
Q Consensus 305 ~~~~v~yc~~~~t~Ls~~eve--------~~~~c~~~g~~~e~~~~~ 343 (365)
.+-..|||+.|-.-++..++. .+-.||.|.+++..+...
T Consensus 22 ~Ei~~~yCp~CL~~~p~~e~~~~~nrC~r~Cf~CP~C~~~L~~~~~~ 68 (483)
T PF05502_consen 22 EEIDSYYCPNCLFEVPSSEARSEKNRCSRNCFDCPICFSPLSVRASD 68 (483)
T ss_pred cccceeECccccccCChhhheeccceeccccccCCCCCCcceeEecc
Confidence 344579999999888887762 245689999998777655
No 198
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=30.17 E-value=2.6e+02 Score=23.54 Aligned_cols=94 Identities=11% Similarity=0.078 Sum_probs=53.2
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ 266 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~ 266 (365)
.+-|+..| -+|.+..-|+..+ + ..|.+=.++.|.-...= .-..-..++.+-.+..++.|+
T Consensus 28 ~vriIrvp--C~Grv~~~~il~A-----f-----~~GADGV~V~gC~~g~C--------h~~~Gn~~a~~Rv~~~k~~L~ 87 (124)
T PF02662_consen 28 NVRIIRVP--CSGRVDPEFILRA-----F-----EKGADGVLVAGCHPGDC--------HYREGNYRAEKRVERLKKLLE 87 (124)
T ss_pred CeEEEEcc--CCCccCHHHHHHH-----H-----HcCCCEEEEeCCCCCCC--------CcchhhHHHHHHHHHHHHHHH
Confidence 45555555 5666666664433 2 24777666655432110 011123566788899999999
Q ss_pred hcCCCccCCCccccc--C-hhhHHHHHHHHHHHHHCC
Q psy7914 267 GFGCKFNWESELATC--D-PKYYKWTQALFLDLYHAG 300 (365)
Q Consensus 267 ~lgI~~D~~~~~~t~--d-~~~~~~v~~~f~~L~~kG 300 (365)
.+||..+--.+...+ + ..+.+.+.++.+++.+-|
T Consensus 88 ~~Gi~~eRv~~~~~~~~~~~~fa~~~~~f~~~i~~lG 124 (124)
T PF02662_consen 88 ELGIEPERVRLYWISAPEGKRFAEIVNEFTERIKELG 124 (124)
T ss_pred HcCCChhHeEEEEeCcccHHHHHHHHHHHHHHHHHcC
Confidence 999988711111122 2 456666677777666543
No 199
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=30.06 E-value=57 Score=21.31 Aligned_cols=30 Identities=13% Similarity=-0.103 Sum_probs=19.1
Q ss_pred eeecCCCCcccccccc---ccCCCccCCCCccE
Q psy7914 309 VNWDPIDNTVLADEQV---DEQGISWRSGARVE 338 (365)
Q Consensus 309 v~yc~~~~t~Ls~~ev---e~~~~c~~~g~~~e 338 (365)
.+.|+.|+..+.-..- .....|+.||.+++
T Consensus 5 ~y~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~~~~ 37 (41)
T smart00834 5 EYRCEDCGHTFEVLQKISDDPLATCPECGGDVR 37 (41)
T ss_pred EEEcCCCCCEEEEEEecCCCCCCCCCCCCCcce
Confidence 4679999985432221 23457999999654
No 200
>PF10009 DUF2252: Uncharacterized protein conserved in bacteria (DUF2252); InterPro: IPR018721 This domain has no known function.
Probab=29.51 E-value=1.5e+02 Score=29.98 Aligned_cols=91 Identities=9% Similarity=0.059 Sum_probs=57.2
Q ss_pred CCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCC---------------chHHHHHHHcCCCH---HHHHHHH
Q psy7914 196 YPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFG---------------LPAENAAHQHGIDP---REWTVGN 257 (365)
Q Consensus 196 npnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G---------------~~I~~~A~~~g~~~---~e~~~~~ 257 (365)
-..|++|+++.-.+. +-+=..++++||++ ..|...+++.|++. .+.+..+
T Consensus 45 ~icGD~Hl~NFG~~~------------~~~~~~vFdiNDFDEa~~gp~~wDl~Rla~Si~laa~~~gl~~~~~~~~~~~~ 112 (385)
T PF10009_consen 45 WICGDAHLENFGAFA------------SPEGRVVFDINDFDEALPGPFEWDLKRLATSIVLAARENGLSDKDARKAVRAF 112 (385)
T ss_pred EEeccchhhccCccc------------CCCCCEEecCCCCCcCCcCChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 357999999965542 33444455566654 56677778888875 4456788
Q ss_pred HHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHC
Q psy7914 258 IATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHA 299 (365)
Q Consensus 258 ~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~k 299 (365)
.+.+++.|..+.-...-..++ .........+.+++++..++
T Consensus 113 ~~~Y~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ka~~r 153 (385)
T PF10009_consen 113 LEGYREALADYAGMDPLDVWY-FTPDNASGPVRKALKKARKR 153 (385)
T ss_pred HHHHHHHHHHhcCCChhhcee-cCchhhHHHHHHHHHHHHHh
Confidence 888888888776543322222 33344456667777766655
No 201
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=29.35 E-value=85 Score=26.14 Aligned_cols=43 Identities=7% Similarity=-0.235 Sum_probs=27.1
Q ss_pred EEEeCcceeecCCCCccccccccccCCCccCCCCc-cEEEEeeeee
Q psy7914 302 VYRKEATVNWDPIDNTVLADEQVDEQGISWRSGAR-VEKRRLSQWF 346 (365)
Q Consensus 302 Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~-~e~~~~~~~f 346 (365)
..+......+|..|+...+-.+. ...||.||++ .....-+-+.
T Consensus 63 ~I~~~p~~~~C~~Cg~~~~~~~~--~~~CP~Cgs~~~~i~~G~El~ 106 (115)
T TIGR00100 63 NIEDEPVECECEDCSEEVSPEID--LYRCPKCHGIMLQVRAGKELN 106 (115)
T ss_pred EEEeeCcEEEcccCCCEEecCCc--CccCcCCcCCCcEEecCCeEE
Confidence 34455667899999976655443 3569999985 3444444333
No 202
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=29.28 E-value=37 Score=27.27 Aligned_cols=29 Identities=17% Similarity=0.029 Sum_probs=24.5
Q ss_pred eecCCCCccccccccc-------cCCCccCCCCccE
Q psy7914 310 NWDPIDNTVLADEQVD-------EQGISWRSGARVE 338 (365)
Q Consensus 310 ~yc~~~~t~Ls~~eve-------~~~~c~~~g~~~e 338 (365)
-.|+.|++.|+-.|.. ..|+|..|+.++-
T Consensus 34 S~C~~C~~~L~~~~lIPi~S~l~lrGrCr~C~~~I~ 69 (92)
T PF06750_consen 34 SHCPHCGHPLSWWDLIPILSYLLLRGRCRYCGAPIP 69 (92)
T ss_pred CcCcCCCCcCcccccchHHHHHHhCCCCcccCCCCC
Confidence 3799999999988864 5899999999864
No 203
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.51 E-value=73 Score=29.28 Aligned_cols=89 Identities=13% Similarity=0.004 Sum_probs=45.5
Q ss_pred HHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHH-HHhcCCCccCCCcccccChhhHHH
Q psy7914 210 TISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ-LQGFGCKFNWESELATCDPKYYKW 288 (365)
Q Consensus 210 v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~-l~~lgI~~D~~~~~~t~d~~~~~~ 288 (365)
|..|+++.-|+..||.|..-.|+=+...|+.... +++.+..+.+++. +..++-..- .-.-..+-.|.--
T Consensus 89 Vp~~vl~daLk~~GyrVevr~~~l~T~ap~~ev~--------E~vreLse~~~E~~~~~lt~~vr--klVv~~S~~~~~~ 158 (204)
T COG3286 89 VPPDVLIDALKLLGYRVEVRGGELKTNAPWSEVV--------ELVRELSEVYREARFQPLTRQVR--KLVVAVSIVYGLD 158 (204)
T ss_pred CCHHHHHHHHHhCCceEEeeCceeecCCCHHHHH--------HHHHHHHHHHHHHHhccccchhh--hhhhhhhhHhCCC
Confidence 4568888888999999999988844444433321 2233333332222 111110000 0000001111122
Q ss_pred HHHHHHHHHHCCCEEEeCcc
Q psy7914 289 TQALFLDLYHAGLVYRKEAT 308 (365)
Q Consensus 289 v~~~f~~L~~kG~Iy~~~~~ 308 (365)
+.++...+.+.|++.++...
T Consensus 159 ~dd~~eeave~Gll~e~E~~ 178 (204)
T COG3286 159 PDDAAEEAVELGLLEEGEDG 178 (204)
T ss_pred HHHHHHHHHHhhhhhccchh
Confidence 35778889999998777653
No 204
>PRK05978 hypothetical protein; Provisional
Probab=28.45 E-value=33 Score=30.12 Aligned_cols=30 Identities=13% Similarity=0.049 Sum_probs=24.5
Q ss_pred cCCCCc-cccccccccCCCccCCCCccEEEE
Q psy7914 312 DPIDNT-VLADEQVDEQGISWRSGARVEKRR 341 (365)
Q Consensus 312 c~~~~t-~Ls~~eve~~~~c~~~g~~~e~~~ 341 (365)
||+|++ -|-..+...+..|+.||.+.+..+
T Consensus 36 CP~CG~G~LF~g~Lkv~~~C~~CG~~~~~~~ 66 (148)
T PRK05978 36 CPACGEGKLFRAFLKPVDHCAACGEDFTHHR 66 (148)
T ss_pred CCCCCCCcccccccccCCCccccCCccccCC
Confidence 999986 566778888999999999877543
No 205
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=28.42 E-value=1.3e+02 Score=24.43 Aligned_cols=58 Identities=9% Similarity=0.008 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeeeEe
Q psy7914 287 KWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIR 348 (365)
Q Consensus 287 ~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ff~ 348 (365)
..+..+-+.|..+|..-.-.- .-|..|+-..-+..|..-.+||.|.+ ||.++..+|++
T Consensus 38 ~~L~hiak~lkr~g~~Llv~P--a~CkkCGfef~~~~ik~pSRCP~CKS--E~Ie~prF~ie 95 (97)
T COG3357 38 DHLEHIAKSLKRKGKRLLVRP--ARCKKCGFEFRDDKIKKPSRCPKCKS--EWIEEPRFVIE 95 (97)
T ss_pred HHHHHHHHHHHhCCceEEecC--hhhcccCccccccccCCcccCCcchh--hcccCCceeec
Confidence 344555566777776433222 34888998777777766678999987 45555665543
No 206
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=28.22 E-value=80 Score=27.63 Aligned_cols=49 Identities=14% Similarity=-0.038 Sum_probs=32.5
Q ss_pred HHHHHHHHHHCCCEEEeCcc---eeecCCCCccccccccccCCCccCCCCcc
Q psy7914 289 TQALFLDLYHAGLVYRKEAT---VNWDPIDNTVLADEQVDEQGISWRSGARV 337 (365)
Q Consensus 289 v~~~f~~L~~kG~Iy~~~~~---v~yc~~~~t~Ls~~eve~~~~c~~~g~~~ 337 (365)
..+++..|...|.-.-++.. .+-|..|+.-+.=.....=+.|+.||+.-
T Consensus 89 w~el~~d~~h~g~Y~sGE~~g~G~l~C~~Cg~~~~~~~~~~l~~Cp~C~~~~ 140 (146)
T PF07295_consen 89 WAELAQDLEHHGVYHSGEVVGPGTLVCENCGHEVELTHPERLPPCPKCGHTE 140 (146)
T ss_pred HHHHHHHHHhcCCeecCcEecCceEecccCCCEEEecCCCcCCCCCCCCCCe
Confidence 46788999999944444432 37899999654433333346799999853
No 207
>KOG2145|consensus
Probab=28.20 E-value=45 Score=32.72 Aligned_cols=27 Identities=26% Similarity=0.483 Sum_probs=20.5
Q ss_pred CceEEEecCCCCCCCCchHHHHHHHHh
Q psy7914 186 DNFYVLSMFPYPSGSLHMGHVRVYTIS 212 (365)
Q Consensus 186 ~~~~I~~~~PnpnG~LHiGHar~~v~~ 212 (365)
+++++.++----++.||+||.-.+++.
T Consensus 84 kpFyLYTGRGpSS~smHlGHliPFift 110 (397)
T KOG2145|consen 84 KPFYLYTGRGPSSESMHLGHLIPFIFT 110 (397)
T ss_pred CceEEEeCCCCCccccccccchhHHHH
Confidence 468888774336899999999887654
No 208
>COG3001 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.81 E-value=4.1e+02 Score=25.74 Aligned_cols=111 Identities=22% Similarity=0.343 Sum_probs=63.0
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCH------HH----HHHH
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDP------RE----WTVG 256 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~------~e----~~~~ 256 (365)
.++|++..|. ||+- +-..+.++--+||+.+..+-. .+|+|---. .|.++ .. ++++
T Consensus 86 sylVle~L~~--~~~d--~~~~~~~GqqLA~LH~~~~~~---~fG~d~dn~--------iG~t~QpN~W~~~Wa~Ffaeq 150 (286)
T COG3001 86 SYLVLEYLPT--GPLD--AHSAFILGQQLARLHQWGGQA---QFGLDFDNY--------IGTTPQPNTWQRRWATFFAEQ 150 (286)
T ss_pred eEEEEeeccC--CCCC--chhHHHHHHHHHHHHhhcCcc---ccCcccccc--------cCCCCCCCCCcchHHHHHHHh
Confidence 4777777544 5544 446788999999999998877 666652110 12221 12 2455
Q ss_pred HHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHH---------------CCCEEEeCcceeecCCCCccccc
Q psy7914 257 NIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYH---------------AGLVYRKEATVNWDPIDNTVLAD 321 (365)
Q Consensus 257 ~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~---------------kG~Iy~~~~~v~yc~~~~t~Ls~ 321 (365)
-+.-+.+.+++=|+.+. . .+.+.+.+.+|.+ -++..-.++++.|||.| +--|
T Consensus 151 Rig~qlqlar~rg~~f~--d---------id~~~~~v~elL~~hqpqPsLlHGDLW~gN~a~~~~GPv~fDPA~--y~GD 217 (286)
T COG3001 151 RIGWQLQLARERGLTFG--D---------IDAIVEKIQELLADHQPQPSLLHGDLWSGNCAFGKDGPVIFDPAC--YWGD 217 (286)
T ss_pred hhhHHHHHHHHhCCCcc--C---------HHHHHHHHHHHHhcCCCCcceeecccccccccccCCCCeeecccc--ccCC
Confidence 55666666666666443 1 1222223333322 34455577888888886 3445
Q ss_pred cccc
Q psy7914 322 EQVD 325 (365)
Q Consensus 322 ~eve 325 (365)
+|++
T Consensus 218 rE~D 221 (286)
T COG3001 218 RECD 221 (286)
T ss_pred cccc
Confidence 5553
No 209
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=27.59 E-value=97 Score=26.76 Aligned_cols=43 Identities=16% Similarity=0.057 Sum_probs=26.4
Q ss_pred HHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCcc--EEEEe
Q psy7914 290 QALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARV--EKRRL 342 (365)
Q Consensus 290 ~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~--e~~~~ 342 (365)
.+.++.|.+..++.. -|.+|++..-.... .|+.||++. |+++.
T Consensus 16 ~~f~~~l~~~kl~g~------kC~~CG~v~~PPr~----~Cp~C~~~~~~E~vel 60 (140)
T COG1545 16 SKFFKGLKEGKLLGT------KCKKCGRVYFPPRA----YCPKCGSETELEWVEL 60 (140)
T ss_pred hHHhhhhhhCcEEEE------EcCCCCeEEcCCcc----cCCCCCCCCceEEEEe
Confidence 456666776544443 49999986544443 377777763 55543
No 210
>PLN02674 adenylate kinase
Probab=27.41 E-value=1.2e+02 Score=28.80 Aligned_cols=49 Identities=10% Similarity=0.089 Sum_probs=32.0
Q ss_pred eecCCCCccccccccc--cCCCccCCCCccEEEEeeeeeEeCchhHHHHHhhhcc
Q psy7914 310 NWDPIDNTVLADEQVD--EQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDSV 362 (365)
Q Consensus 310 ~yc~~~~t~Ls~~eve--~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~~~ 362 (365)
..|+.|+..+.....- ..++|..||.++..|.-++ .+..+.+|+.|...
T Consensus 159 ~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L~~R~DD~----~e~i~~RL~~Y~~~ 209 (244)
T PLN02674 159 WIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDT----AAVLKSRLEAFHKQ 209 (244)
T ss_pred ccccccCCccccccCCCcccCcccccCCccccCCCCC----HHHHHHHHHHHHHH
Confidence 4577777654433221 2457888999888888776 46777777777643
No 211
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=27.28 E-value=25 Score=22.32 Aligned_cols=25 Identities=4% Similarity=-0.270 Sum_probs=11.2
Q ss_pred ecCCCCccccccccccCCCccCCCC
Q psy7914 311 WDPIDNTVLADEQVDEQGISWRSGA 335 (365)
Q Consensus 311 yc~~~~t~Ls~~eve~~~~c~~~g~ 335 (365)
||+.|+.......-+..-+|+.||.
T Consensus 5 fC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 5 FCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp B-TTT--BEEE-SSSS-EEESSSS-
T ss_pred ccCcCCccccCCCCcCEeECCCCcC
Confidence 6777776655555444445666664
No 212
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=27.26 E-value=1.2e+02 Score=20.87 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHCCCEEEeCcceee
Q psy7914 286 YKWTQALFLDLYHAGLVYRKEATVNW 311 (365)
Q Consensus 286 ~~~v~~~f~~L~~kG~Iy~~~~~v~y 311 (365)
...+.+.+.+|.+.|++....+..|+
T Consensus 34 ~~tv~~~l~~L~~~g~i~~~~~~g~~ 59 (60)
T smart00345 34 RTTVREALSRLEAEGLVQRRPGSGTF 59 (60)
T ss_pred HHHHHHHHHHHHHCCCEEEecCCeeE
Confidence 35678999999999999887776654
No 213
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=26.81 E-value=40 Score=20.67 Aligned_cols=21 Identities=10% Similarity=0.028 Sum_probs=15.0
Q ss_pred cCCCCccccccccccCCCccCCCCc
Q psy7914 312 DPIDNTVLADEQVDEQGISWRSGAR 336 (365)
Q Consensus 312 c~~~~t~Ls~~eve~~~~c~~~g~~ 336 (365)
||.|+..++.... .|+.||..
T Consensus 3 CP~C~~~V~~~~~----~Cp~CG~~ 23 (26)
T PF10571_consen 3 CPECGAEVPESAK----FCPHCGYD 23 (26)
T ss_pred CCCCcCCchhhcC----cCCCCCCC
Confidence 7888877766554 58888864
No 214
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=26.66 E-value=1e+02 Score=32.66 Aligned_cols=53 Identities=9% Similarity=-0.023 Sum_probs=41.8
Q ss_pred HHHCCCEEEeCcceeecCCCCcccc------------------cccc-----ccCCCccCCCCccEEEEeeeeeEe
Q psy7914 296 LYHAGLVYRKEATVNWDPIDNTVLA------------------DEQV-----DEQGISWRSGARVEKRRLSQWFIR 348 (365)
Q Consensus 296 L~~kG~Iy~~~~~v~yc~~~~t~Ls------------------~~ev-----e~~~~c~~~g~~~e~~~~~~~ff~ 348 (365)
+...|++-.=..+..-|..|++..- ..++ +++-+|+.||.+..-....|+.|+
T Consensus 75 ~kASGHvd~FsDplv~c~~c~~~yRADHLiEe~l~~~~~~~~~~~e~~~ii~~~~ir~p~~g~~l~~v~~FNLMF~ 150 (558)
T COG0423 75 WKASGHVDKFSDPLVECKKCGERYRADHLIEEYLGKDGHGNMSPEELTEIIREYDIRCPECGGELNEVREFNLMFK 150 (558)
T ss_pred hhhcCcccccccceeeccccchhhhhhHHHHHHhhhcccccCCHHHHHHHHHHcCCcCCCcCCccCCcceeeeEEE
Confidence 7788998888888889999987433 1122 256789999999998889999998
No 215
>PRK00420 hypothetical protein; Validated
Probab=26.64 E-value=37 Score=28.41 Aligned_cols=45 Identities=11% Similarity=-0.031 Sum_probs=27.7
Q ss_pred HHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEE
Q psy7914 291 ALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKR 340 (365)
Q Consensus 291 ~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~ 340 (365)
+.+.++.-+|.... .-.||.|++.|....- -.-.|+.||.++...
T Consensus 9 k~~a~~Ll~Ga~ml----~~~CP~Cg~pLf~lk~-g~~~Cp~Cg~~~~v~ 53 (112)
T PRK00420 9 KKAAELLLKGAKML----SKHCPVCGLPLFELKD-GEVVCPVHGKVYIVK 53 (112)
T ss_pred HHHHHHHHhHHHHc----cCCCCCCCCcceecCC-CceECCCCCCeeeec
Confidence 34444555565442 2479999998886311 133689999976543
No 216
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=26.32 E-value=4e+02 Score=22.73 Aligned_cols=27 Identities=19% Similarity=0.102 Sum_probs=18.9
Q ss_pred CCCCCchHHHHHHHHhhHHHHHHHHCCCcEEec
Q psy7914 197 PSGSLHMGHVRVYTISDTLARYYAMNGKNVFQP 229 (365)
Q Consensus 197 pnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~ 229 (365)
+.|..| -++. .++++++|..|++|.+.
T Consensus 11 ~~gD~H---~lG~---~iv~~~lr~~G~eVi~L 37 (137)
T PRK02261 11 IGADCH---AVGN---KILDRALTEAGFEVINL 37 (137)
T ss_pred CCCChh---HHHH---HHHHHHHHHCCCEEEEC
Confidence 346655 3443 45667889999999987
No 217
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=26.20 E-value=1.2e+02 Score=21.24 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHCCCEEEeCcceeec
Q psy7914 286 YKWTQALFLDLYHAGLVYRKEATVNWD 312 (365)
Q Consensus 286 ~~~v~~~f~~L~~kG~Iy~~~~~v~yc 312 (365)
...+.+.+.+|.++|+|....+..|+.
T Consensus 39 ~~~v~~~l~~L~~~G~i~~~~~~~~~l 65 (66)
T cd07377 39 RTTVREALRELEAEGLVERRPGRGTFV 65 (66)
T ss_pred HHHHHHHHHHHHHCCCEEecCCCeEEe
Confidence 467789999999999998776666653
No 218
>PRK07111 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=25.98 E-value=95 Score=34.33 Aligned_cols=59 Identities=12% Similarity=0.177 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHCCCEEEe-CcceeecCCCCccccccccccCCCccCCCCc-c-EEEEeeeeeEeC
Q psy7914 286 YKWTQALFLDLYHAGLVYRK-EATVNWDPIDNTVLADEQVDEQGISWRSGAR-V-EKRRLSQWFIRT 349 (365)
Q Consensus 286 ~~~v~~~f~~L~~kG~Iy~~-~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~-~-e~~~~~~~ff~L 349 (365)
.+.+.++++.+.+.|.-|-. ..++-.|+.|+ +.... ...||.||+. + .+++..-|+=++
T Consensus 656 ~eal~~lvk~~~~~~i~Y~sin~~~~~C~~CG-~~~~~----~~~CP~CG~~~~~~~~Ri~GYl~~v 717 (735)
T PRK07111 656 VEAFEIIVKAMKNTNIGYGSINHPVDRCPVCG-YLGVI----EDKCPKCGSTNIQRIRRITGYLGTL 717 (735)
T ss_pred HHHHHHHHHHHHhCCCceEEeCCCCeecCCCC-CCCCc----CccCcCCCCccceeeehhhhhccch
Confidence 46677788887777877754 45667899999 33321 3579999963 3 455555666333
No 219
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=25.90 E-value=49 Score=34.36 Aligned_cols=34 Identities=9% Similarity=0.117 Sum_probs=25.5
Q ss_pred CcceeecCCCCccccccccccCCCccCCCCccEEEEee
Q psy7914 306 EATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLS 343 (365)
Q Consensus 306 ~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~ 343 (365)
.-++|=|+.|++.+- ....|.| .||+.+..++.+
T Consensus 127 ~va~w~c~~cg~~ie---an~kp~c-~cg~~~~~~ei~ 160 (593)
T COG2401 127 KVALWRCEKCGTIIE---ANTKPEC-KCGSHVHILEIK 160 (593)
T ss_pred eEEEEecchhchhhh---hcCCccc-CCCCceEEEEee
Confidence 346799999999863 3346789 899988877654
No 220
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=25.29 E-value=70 Score=27.86 Aligned_cols=41 Identities=12% Similarity=0.167 Sum_probs=20.0
Q ss_pred CCCCCCCCchHHHHHHHH-hhHHHHHHHHCCCcEEeccCCCC
Q psy7914 194 FPYPSGSLHMGHVRVYTI-SDTLARYYAMNGKNVFQPMGWDA 234 (365)
Q Consensus 194 ~PnpnG~LHiGHar~~v~-~DvlaR~lr~~G~~V~~~~g~Dd 234 (365)
.-.=-|||||||...+.. -+-+-+--...+..|.+-++.|.
T Consensus 37 F~~DFGPlnL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~ 78 (141)
T PF14671_consen 37 FYADFGPLNLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDP 78 (141)
T ss_dssp SSS------HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-H
T ss_pred ccCcCCCccHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCCh
Confidence 334569999999987432 22222222347899999988775
No 221
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=24.77 E-value=68 Score=32.39 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=29.5
Q ss_pred cEEeccCCCC---CCchHHHHHHHcCCCH------HHHH-HHHHHHHHHHHHhcCCCc
Q psy7914 225 NVFQPMGWDA---FGLPAENAAHQHGIDP------REWT-VGNIATMKSQLQGFGCKF 272 (365)
Q Consensus 225 ~V~~~~g~Dd---~G~~I~~~A~~~g~~~------~e~~-~~~~~~i~~~l~~lgI~~ 272 (365)
-++.++.||- .|..-+....+.|..+ .|.+ .-.+..+.+...++|...
T Consensus 141 glL~vTaTD~~~L~G~~~~~~~rkYga~~~~~~~~~E~glRiLlg~i~r~Aa~~~~~i 198 (374)
T TIGR00308 141 GLLLVTATDTSALCGNYPKSCLRKYGANPVKTESCHESALRLLLGFVKRTAAKYEKAL 198 (374)
T ss_pred CEEEEEecccHHhcCCChHHHHHHhCCcccCCcchHHHHHHHHHHHHHHHHHHcCCce
Confidence 4777777876 3555555555545322 4443 555677778888887765
No 222
>KOG2845|consensus
Probab=24.75 E-value=16 Score=37.89 Aligned_cols=51 Identities=14% Similarity=0.003 Sum_probs=41.3
Q ss_pred cCCCCccccccccccCCCccCCCCccEEEEeeeeeEeCch-------------------hHHHHHhhhcccC
Q psy7914 312 DPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTR-------------------LANLVSLVDSVSA 364 (365)
Q Consensus 312 c~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ff~Ls~-------------------~~~~L~~~~~~~~ 364 (365)
|-.|++.+=+.|= .|-|..||.++..+.+...+.+-.. ++++|.+|+.+|.
T Consensus 173 CL~CGkIVCeQEG--sGPC~fCg~~V~t~eeq~~l~~~~n~~~l~G~~~iss~~~~A~~~k~klLe~d~nS~ 242 (505)
T KOG2845|consen 173 CLGCGKIVCEQEG--SGPCGFCGTPVCTREEQGILNRELNQKLLKGKVSISSALEKAYVHKDKLLEYDRNSE 242 (505)
T ss_pred ccccceeEEEecC--cccccccCCeeechhHHHHHHHHhhhhhccCccccchhhhhHHHHHhhhcccccccc
Confidence 8888887655444 3789999999999998887777666 8899999988875
No 223
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=24.22 E-value=1e+02 Score=23.02 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHCCCEEEeCc
Q psy7914 286 YKWTQALFLDLYHAGLVYRKEA 307 (365)
Q Consensus 286 ~~~v~~~f~~L~~kG~Iy~~~~ 307 (365)
...|...++.|.++|+|.+..+
T Consensus 40 ~~tv~~~L~~Le~kG~I~r~~~ 61 (65)
T PF01726_consen 40 TSTVQRHLKALERKGYIRRDPG 61 (65)
T ss_dssp HHHHHHHHHHHHHTTSEEEGCC
T ss_pred hHHHHHHHHHHHHCcCccCCCC
Confidence 3567899999999999987653
No 224
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=24.02 E-value=60 Score=24.09 Aligned_cols=31 Identities=10% Similarity=-0.101 Sum_probs=17.7
Q ss_pred eecCCCCccccccccccCCCccCCCCccEEE
Q psy7914 310 NWDPIDNTVLADEQVDEQGISWRSGARVEKR 340 (365)
Q Consensus 310 ~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~ 340 (365)
..|.+|+..|+..+--..-.|+.||..+.+|
T Consensus 8 ~~CtSCg~~i~~~~~~~~F~CPnCG~~~I~R 38 (59)
T PRK14890 8 PKCTSCGIEIAPREKAVKFLCPNCGEVIIYR 38 (59)
T ss_pred ccccCCCCcccCCCccCEeeCCCCCCeeEee
Confidence 3577777777655522344566666654443
No 225
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=23.92 E-value=85 Score=21.67 Aligned_cols=35 Identities=6% Similarity=-0.108 Sum_probs=23.7
Q ss_pred eeecCCCCccccccccccCCCccCCCCccEEEEeee
Q psy7914 309 VNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQ 344 (365)
Q Consensus 309 v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~ 344 (365)
.|-|..|+.-+.-..- ..-+|+.||+.+-.++...
T Consensus 2 ~Y~C~~Cg~~~~~~~~-~~irC~~CG~rIlyK~R~~ 36 (44)
T smart00659 2 IYICGECGRENEIKSK-DVVRCRECGYRILYKKRTK 36 (44)
T ss_pred EEECCCCCCEeecCCC-CceECCCCCceEEEEeCCC
Confidence 4668888875544321 2357999999988776554
No 226
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=23.76 E-value=42 Score=24.12 Aligned_cols=10 Identities=30% Similarity=0.906 Sum_probs=8.0
Q ss_pred CCCchHHHHH
Q psy7914 199 GSLHMGHVRV 208 (365)
Q Consensus 199 G~LHiGHar~ 208 (365)
.|+|.||.+-
T Consensus 9 dp~H~GH~~~ 18 (66)
T TIGR00125 9 DPFHLGHLDL 18 (66)
T ss_pred CCCCHHHHHH
Confidence 5699999864
No 227
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=23.71 E-value=3.5e+02 Score=23.14 Aligned_cols=49 Identities=10% Similarity=0.120 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhcCCCccCCC--cccccC-hhhHHHHHHHHHHHHHCCC
Q psy7914 253 WTVGNIATMKSQLQGFGCKFNWES--ELATCD-PKYYKWTQALFLDLYHAGL 301 (365)
Q Consensus 253 ~~~~~~~~i~~~l~~lgI~~D~~~--~~~t~d-~~~~~~v~~~f~~L~~kG~ 301 (365)
.+++-.+.+++.|+.|||..+-.+ +.+..+ ..+.+.+.++.+++.+-|-
T Consensus 75 ka~rR~~~lke~l~elgie~eRv~~~wiSa~E~ekf~e~~~efv~~i~~lGp 126 (132)
T COG1908 75 KAKRRMELLKELLKELGIEPERVRVLWISAAEGEKFAETINEFVERIKELGP 126 (132)
T ss_pred HHHHHHHHHHHHHHHhCCCcceEEEEEEehhhHHHHHHHHHHHHHHHHHhCC
Confidence 356678889999999999876111 222222 5677888888888887653
No 228
>KOG2805|consensus
Probab=23.46 E-value=2e+02 Score=28.68 Aligned_cols=77 Identities=23% Similarity=0.330 Sum_probs=44.1
Q ss_pred HHHhhHHHHHHHHCCCcEEecc--CCC---CCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCccCCCcccccCh
Q psy7914 209 YTISDTLARYYAMNGKNVFQPM--GWD---AFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDP 283 (365)
Q Consensus 209 ~v~~DvlaR~lr~~G~~V~~~~--g~D---d~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~ 283 (365)
.|=.-+-|++|+.+||+|+-++ .|| ++|..- | ++.=...-+.-.+.|+|.++ . .....
T Consensus 15 GVDSsVaa~Ll~~~g~~v~gv~M~nWd~~de~~s~c----------p---~e~D~~da~~Vc~~LnI~~~--~--Vnf~k 77 (377)
T KOG2805|consen 15 GVDSSVAARLLAARGYNVTGVFMKNWDSLDEFGSQC----------P---AERDWKDAKRVCKQLNIPLH--Q--VNFVK 77 (377)
T ss_pred CchHHHHHHHHHhcCCCeeEEeeeccccccccccCC----------C---chhhHHHHHHHHHHhCCeeE--E--EeeHH
Confidence 3445677889999999998665 343 333210 1 01112233455677888776 2 22334
Q ss_pred hhHHHHHHHHHHHHHCCCE
Q psy7914 284 KYYKWTQALFLDLYHAGLV 302 (365)
Q Consensus 284 ~~~~~v~~~f~~L~~kG~I 302 (365)
+|-..|-.-|.+.+++|..
T Consensus 78 EYW~~Vfs~~L~~Y~~G~T 96 (377)
T KOG2805|consen 78 EYWNDVFSPFLEEYENGRT 96 (377)
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 5666666666667777754
No 229
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=22.86 E-value=1.7e+02 Score=21.16 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHCCCEEEeCcceee
Q psy7914 286 YKWTQALFLDLYHAGLVYRKEATVNW 311 (365)
Q Consensus 286 ~~~v~~~f~~L~~kG~Iy~~~~~v~y 311 (365)
...+.+++..|.+.|+|+...+..+|
T Consensus 38 r~tvr~al~~L~~~g~i~~~~~~G~~ 63 (64)
T PF00392_consen 38 RTTVREALRRLEAEGLIERRPGRGTF 63 (64)
T ss_dssp HHHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred CcHHHHHHHHHHHCCcEEEECCceEE
Confidence 45689999999999999999887765
No 230
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=22.78 E-value=46 Score=20.68 Aligned_cols=16 Identities=6% Similarity=0.017 Sum_probs=7.5
Q ss_pred CccCCCCccEEEEeee
Q psy7914 329 ISWRSGARVEKRRLSQ 344 (365)
Q Consensus 329 ~c~~~g~~~e~~~~~~ 344 (365)
.||.||++++..+.+.
T Consensus 1 ~CP~C~s~l~~~~~ev 16 (28)
T PF03119_consen 1 TCPVCGSKLVREEGEV 16 (28)
T ss_dssp B-TTT--BEEE-CCTT
T ss_pred CcCCCCCEeEcCCCCE
Confidence 3778888877555443
No 231
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=22.74 E-value=46 Score=21.76 Aligned_cols=25 Identities=12% Similarity=0.018 Sum_probs=10.1
Q ss_pred ecCCCCccccccccccC----CCccCCCC
Q psy7914 311 WDPIDNTVLADEQVDEQ----GISWRSGA 335 (365)
Q Consensus 311 yc~~~~t~Ls~~eve~~----~~c~~~g~ 335 (365)
||+.|+..|.-+-.+-+ -+|+.||.
T Consensus 2 fC~~CG~~l~~~ip~gd~r~R~vC~~Cg~ 30 (34)
T PF14803_consen 2 FCPQCGGPLERRIPEGDDRERLVCPACGF 30 (34)
T ss_dssp B-TTT--B-EEE--TT-SS-EEEETTTTE
T ss_pred ccccccChhhhhcCCCCCccceECCCCCC
Confidence 77778777655444212 14666664
No 232
>PRK13795 hypothetical protein; Provisional
Probab=22.44 E-value=82 Score=34.11 Aligned_cols=35 Identities=20% Similarity=0.069 Sum_probs=26.5
Q ss_pred CCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEE
Q psy7914 300 GLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKR 340 (365)
Q Consensus 300 G~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~ 340 (365)
+-+|.++..+|||..|+.++- ..+|..||......
T Consensus 3 ~~~~~~~~~~~wc~~cn~p~~------~~~c~~c~~~~~~~ 37 (636)
T PRK13795 3 KPVYLGKDHIYWCEKCNVPLL------GKKCGICGKEGFKV 37 (636)
T ss_pred CceeecceeEEEcccCCCeec------cccccccCCCceEe
Confidence 457788889999999999863 55688888864333
No 233
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=22.29 E-value=52 Score=21.37 Aligned_cols=28 Identities=18% Similarity=0.024 Sum_probs=17.2
Q ss_pred ecCCCCcc--ccccccccC---CCccCCCCccE
Q psy7914 311 WDPIDNTV--LADEQVDEQ---GISWRSGARVE 338 (365)
Q Consensus 311 yc~~~~t~--Ls~~eve~~---~~c~~~g~~~e 338 (365)
=||+|++. +++..+..+ .+|+.||++..
T Consensus 4 ~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~~~ 36 (38)
T TIGR02098 4 QCPNCKTSFRVVDSQLGANGGKVRCGKCGHVWY 36 (38)
T ss_pred ECCCCCCEEEeCHHHcCCCCCEEECCCCCCEEE
Confidence 37788773 344444323 37999998764
No 234
>TIGR02827 RNR_anaer_Bdell anaerobic ribonucleoside-triphosphate reductase. Members of this family belong to the class III anaerobic ribonucleoside-triphosphate reductases (RNR). These glycine-radical-containing enzymes are oxygen-sensitive and operate under anaerobic conditions. The genes for this family are pair with genes for an acitivating protein that creates a glycine radical. Members of this family, though related, fall outside the scope of TIGR02487, a functionally equivalent protein set; no genome has members in both familes. Identification as RNR is supported by gene pairing with the activating protein, lack of other anaerobic RNR, and presence of an upstream regulatory element strongly conserved upstream of most RNR operons.
Probab=22.11 E-value=1.9e+02 Score=31.17 Aligned_cols=63 Identities=10% Similarity=-0.014 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHCCCEEEeC-cceeecCCCCccccccccccCCCccCCCCc-c-EEEEeeeeeEeCchh
Q psy7914 286 YKWTQALFLDLYHAGLVYRKE-ATVNWDPIDNTVLADEQVDEQGISWRSGAR-V-EKRRLSQWFIRTTRL 352 (365)
Q Consensus 286 ~~~v~~~f~~L~~kG~Iy~~~-~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~-~-e~~~~~~~ff~Ls~~ 352 (365)
.+.+.++++.+.+++.-|-.- .+.=.|+.|+. +.. + ....||.||+. + .+++..-|+=+++.|
T Consensus 508 ~ea~~~lv~~~~~~~i~Y~tin~~~siC~~CGy-~~g-~--~~~~CP~CGs~~~ev~sRv~GYl~~v~~w 573 (586)
T TIGR02827 508 EDGYRKLLRVAADTGCNYFCFNIKITICNDCHH-IDK-R--TLHRCPVCGSANIDYGTRVIGYLKRVSAF 573 (586)
T ss_pred HHHHHHHHHHHHhcCCceEEeCCCCeecCCCCC-cCC-C--cCCcCcCCCCccceEEEeecceecCcccc
Confidence 456777888887777777654 34567999996 221 1 13579999964 3 466666666554443
No 235
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=22.01 E-value=1.3e+02 Score=25.29 Aligned_cols=45 Identities=7% Similarity=-0.237 Sum_probs=25.8
Q ss_pred EEEeCcceeecCCCCcccccc--ccc-cC--CCccCCCC-ccEEEEeeeeeE
Q psy7914 302 VYRKEATVNWDPIDNTVLADE--QVD-EQ--GISWRSGA-RVEKRRLSQWFI 347 (365)
Q Consensus 302 Iy~~~~~v~yc~~~~t~Ls~~--eve-~~--~~c~~~g~-~~e~~~~~~~ff 347 (365)
..+......+| .|+...+-. .+. .. ..||.||+ .++...-+-+++
T Consensus 63 ~I~~vp~~~~C-~Cg~~~~~~~~~~~~~~~~~~CP~Cgs~~~~i~~G~El~i 113 (124)
T PRK00762 63 IVEMIPVEIEC-ECGYEGVVDEDEIDHYAAVIECPVCGNKRAHILGGRECNV 113 (124)
T ss_pred EEEecCeeEEe-eCcCcccccccchhccccCCcCcCCCCCCCEEecCCeEEE
Confidence 34455677999 999664432 211 12 45999996 445444444433
No 236
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=21.36 E-value=38 Score=33.06 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=22.3
Q ss_pred ecCCCCccccccccccC-CCccCCCCc
Q psy7914 311 WDPIDNTVLADEQVDEQ-GISWRSGAR 336 (365)
Q Consensus 311 yc~~~~t~Ls~~eve~~-~~c~~~g~~ 336 (365)
=|+.|+..+...+++.| .+|+.||+-
T Consensus 29 ~c~~c~~~~~~~~l~~~~~vc~~c~~h 55 (292)
T PRK05654 29 KCPSCGQVLYRKELEANLNVCPKCGHH 55 (292)
T ss_pred ECCCccchhhHHHHHhcCCCCCCCCCC
Confidence 49999999999999765 589999985
No 237
>COG3078 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.10 E-value=1.1e+02 Score=27.06 Aligned_cols=26 Identities=8% Similarity=0.498 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914 248 IDPREWTVGNIATMKSQLQGFGCKFN 273 (365)
Q Consensus 248 ~~~~e~~~~~~~~i~~~l~~lgI~~D 273 (365)
..-..|++..++.|.+.++.|||+.|
T Consensus 125 ~edQ~~VD~~LDRI~~LMe~LGl~~d 150 (169)
T COG3078 125 AEDQQWVDAKLDRIDELMEKLGLSYD 150 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 34478999999999999999999988
No 238
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=21.03 E-value=85 Score=26.00 Aligned_cols=45 Identities=16% Similarity=-0.035 Sum_probs=25.8
Q ss_pred CEEEeCcceeecCCCCccccccccccCCCccCCCCc-cEEEEeeeeeE
Q psy7914 301 LVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGAR-VEKRRLSQWFI 347 (365)
Q Consensus 301 ~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~-~e~~~~~~~ff 347 (365)
+..+......+|..|+.-.+-.+.. ..||.||+. ++...-+-+++
T Consensus 62 L~Ie~~p~~~~C~~Cg~~~~~~~~~--~~CP~Cgs~~~~i~~G~el~i 107 (113)
T PF01155_consen 62 LEIEEVPARARCRDCGHEFEPDEFD--FSCPRCGSPDVEIISGRELRI 107 (113)
T ss_dssp EEEEEE--EEEETTTS-EEECHHCC--HH-SSSSSS-EEEEESS-EEE
T ss_pred EEEEecCCcEECCCCCCEEecCCCC--CCCcCCcCCCcEEccCCeEEE
Confidence 3445666779999999876654442 459999996 45555444443
No 239
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=20.79 E-value=1e+02 Score=20.60 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=17.9
Q ss_pred CCccCCCCccEEEEeee-eeEeCchh
Q psy7914 328 GISWRSGARVEKRRLSQ-WFIRTTRL 352 (365)
Q Consensus 328 ~~c~~~g~~~e~~~~~~-~ff~Ls~~ 352 (365)
..|+.||+++..+.... .|+--+.|
T Consensus 2 ~~CP~Cg~~lv~r~~k~g~F~~Cs~y 27 (39)
T PF01396_consen 2 EKCPKCGGPLVLRRGKKGKFLGCSNY 27 (39)
T ss_pred cCCCCCCceeEEEECCCCCEEECCCC
Confidence 46889998877666554 77766665
No 240
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=20.45 E-value=56 Score=25.07 Aligned_cols=29 Identities=7% Similarity=-0.031 Sum_probs=14.8
Q ss_pred ceeecCCCCccccccccccCCCccCCCCccEEEE
Q psy7914 308 TVNWDPIDNTVLADEQVDEQGISWRSGARVEKRR 341 (365)
Q Consensus 308 ~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~ 341 (365)
..++|..|+. +....+.||.|+.++|..+
T Consensus 16 ~~~~C~~C~~-----~~~~~a~CPdC~~~Le~Lk 44 (70)
T PF07191_consen 16 GHYHCEACQK-----DYKKEAFCPDCGQPLEVLK 44 (70)
T ss_dssp TEEEETTT-------EEEEEEE-TTT-SB-EEEE
T ss_pred CEEECccccc-----cceecccCCCcccHHHHHH
Confidence 3455555554 2334567999999988765
No 241
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=20.43 E-value=84 Score=25.09 Aligned_cols=19 Identities=16% Similarity=0.106 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHCCCEEE
Q psy7914 286 YKWTQALFLDLYHAGLVYR 304 (365)
Q Consensus 286 ~~~v~~~f~~L~~kG~Iy~ 304 (365)
...|..+++.|.+.|+||-
T Consensus 79 ~~~v~~al~~L~~eG~IYs 97 (102)
T PF08784_consen 79 ENEVRKALDFLSNEGHIYS 97 (102)
T ss_dssp HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHhCCeEec
Confidence 4567888999999999985
No 242
>PF13597 NRDD: Anaerobic ribonucleoside-triphosphate reductase; PDB: 1HK8_A 1H78_A 1H7A_A 1H79_A 1H7B_A.
Probab=20.13 E-value=1.1e+02 Score=32.68 Aligned_cols=62 Identities=11% Similarity=0.138 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHH-CCCEEEe-CcceeecCCCCccccccccccCCCccCCCCc-c-EEEEeeeeeEeCchh
Q psy7914 286 YKWTQALFLDLYH-AGLVYRK-EATVNWDPIDNTVLADEQVDEQGISWRSGAR-V-EKRRLSQWFIRTTRL 352 (365)
Q Consensus 286 ~~~v~~~f~~L~~-kG~Iy~~-~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~-~-e~~~~~~~ff~Ls~~ 352 (365)
.+.+.+++++..+ .+..|-. ..++-.|..|+..-.. ...||.||++ + .+++..-|+=+++.|
T Consensus 466 ~~al~~lv~~~~~~~~i~Y~~in~~~~~C~~CG~~~~~-----~~~CP~CGs~~~~~~~Rv~GYl~~v~~~ 531 (546)
T PF13597_consen 466 PEALEKLVRYAMENTGIPYFTINPPIDICPDCGYIGGE-----GDKCPKCGSENIEVYSRVTGYLRPVSRW 531 (546)
T ss_dssp HHHHHHHHHHHHH--H-SEEEEE--EEEETTT---S-------EEE-CCC----EEEEB-SSSS-BTTS--
T ss_pred HHHHHHHHHHHHHhCCCCeEEEecCcccccCCCcCCCC-----CCCCCCCCCcccceEEEeeccccCcccc
Confidence 4566777777777 4555544 4456789999964322 3469999997 4 566666676666554
No 243
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=20.06 E-value=40 Score=25.26 Aligned_cols=17 Identities=24% Similarity=0.040 Sum_probs=13.3
Q ss_pred CCccCCCCccEEEEeee
Q psy7914 328 GISWRSGARVEKRRLSQ 344 (365)
Q Consensus 328 ~~c~~~g~~~e~~~~~~ 344 (365)
.+|++||.+++|.+...
T Consensus 7 v~CP~C~k~~~w~~~~~ 23 (62)
T PRK00418 7 VNCPTCGKPVEWGEISP 23 (62)
T ss_pred ccCCCCCCcccccCCCC
Confidence 47999999999865543
Done!