Query psy7914
Match_columns 365
No_of_seqs 385 out of 2494
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 22:07:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7914.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7914hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4arc_A Leucine--tRNA ligase; l 100.0 1.7E-41 5.7E-46 366.6 19.1 176 184-360 51-226 (880)
2 3u1f_A Methionyl-tRNA syntheta 100.0 7E-41 2.4E-45 346.1 17.7 175 185-361 8-190 (542)
3 2v0c_A Aminoacyl-tRNA syntheta 100.0 1.6E-39 5.5E-44 352.4 20.9 176 184-360 31-207 (878)
4 1rqg_A Methionyl-tRNA syntheta 100.0 1.9E-39 6.5E-44 345.8 19.6 174 186-361 2-204 (722)
5 3h99_A Methionyl-tRNA syntheta 100.0 7.4E-38 2.5E-42 325.1 18.7 180 180-361 12-219 (560)
6 4dlp_A Aminoacyl-tRNA syntheta 100.0 3.2E-37 1.1E-41 318.7 19.6 175 185-361 24-201 (536)
7 2d5b_A Methionyl-tRNA syntheta 100.0 3.7E-37 1.3E-41 315.3 18.9 174 185-361 2-175 (500)
8 2x1l_A Methionyl-tRNA syntheta 100.0 3.9E-37 1.3E-41 317.1 19.1 176 184-361 10-189 (524)
9 3kfl_A Methionyl-tRNA syntheta 100.0 2.3E-37 7.7E-42 321.8 17.3 175 185-361 25-207 (564)
10 2csx_A Methionyl-tRNA syntheta 100.0 1.3E-37 4.4E-42 318.8 14.5 175 185-361 4-178 (497)
11 1ffy_A Isoleucyl-tRNA syntheta 100.0 6.8E-37 2.3E-41 333.2 16.5 142 184-325 46-199 (917)
12 1gax_A Valrs, valyl-tRNA synth 100.0 2.6E-36 8.8E-41 326.5 17.7 142 184-325 32-189 (862)
13 1ile_A Ilers, isoleucyl-tRNA s 100.0 1.1E-36 3.9E-41 328.8 11.5 141 184-324 36-193 (821)
14 1wkb_A Leucyl-tRNA synthetase; 100.0 5.3E-32 1.8E-36 292.0 16.6 143 184-326 32-200 (810)
15 1wz2_A Leucyl-tRNA synthetase; 100.0 3.3E-32 1.1E-36 298.2 14.4 141 186-326 34-200 (967)
16 2zue_A Arginyl-tRNA synthetase 99.9 1.3E-26 4.3E-31 243.6 9.3 195 80-319 54-312 (629)
17 1f7u_A Arginyl-tRNA synthetase 99.9 2.1E-25 7.2E-30 233.1 12.3 186 81-314 81-327 (607)
18 1iq0_A Arginyl-tRNA synthetase 99.9 3.4E-25 1.1E-29 231.5 9.9 178 81-312 49-277 (592)
19 3tqo_A Cysteinyl-tRNA syntheta 99.9 1.5E-23 5.1E-28 212.3 16.4 128 187-317 25-153 (462)
20 3c8z_A Cysteinyl-tRNA syntheta 99.9 1.3E-23 4.6E-28 210.7 14.6 125 187-315 39-168 (414)
21 1li5_A Cysrs, cysteinyl-tRNA s 99.9 8.7E-23 3E-27 207.3 16.3 126 187-316 22-149 (461)
22 3sp1_A Cysteinyl-tRNA syntheta 99.9 6.6E-23 2.3E-27 208.9 13.0 125 188-315 43-177 (501)
23 3fnr_A Arginyl-tRNA synthetase 99.9 2.8E-21 9.4E-26 196.2 13.6 137 165-314 17-200 (464)
24 3aii_A Glutamyl-tRNA synthetas 99.7 1.8E-18 6.3E-23 177.4 9.7 162 126-314 31-195 (553)
25 1irx_A Lysyl-tRNA synthetase; 99.7 4.3E-18 1.5E-22 175.3 5.9 112 188-303 21-151 (523)
26 4arc_A Leucine--tRNA ligase; l 99.5 4.4E-15 1.5E-19 160.7 6.3 77 17-109 215-292 (880)
27 2o5r_A Glutamyl-tRNA synthetas 99.3 4.2E-12 1.4E-16 129.3 10.4 105 187-316 12-123 (481)
28 2v0c_A Aminoacyl-tRNA syntheta 99.3 1.5E-12 5.1E-17 141.4 6.5 76 16-108 195-271 (878)
29 3al0_C Glutamyl-tRNA(Gln) amid 99.3 9.7E-12 3.3E-16 129.4 10.8 94 189-304 130-232 (592)
30 1qtq_A GLNRS, protein (glutami 99.2 1.5E-11 5.3E-16 126.3 10.5 96 188-304 26-121 (553)
31 1nzj_A Hypothetical protein YA 99.2 1.3E-11 4.4E-16 118.5 8.8 95 188-304 5-100 (298)
32 4g6z_A Glutamate-tRNA ligase; 99.2 3.2E-11 1.1E-15 122.6 9.6 103 188-316 25-127 (490)
33 2hz7_A Glutaminyl-tRNA synthet 99.2 4.3E-11 1.5E-15 127.9 10.1 96 188-304 66-161 (851)
34 2cfo_A Glutamyl-tRNA synthetas 99.1 8.8E-11 3E-15 119.8 9.3 100 189-314 2-101 (492)
35 3afh_A Glutamyl-tRNA synthetas 99.1 1.4E-10 4.9E-15 118.1 10.5 101 189-316 26-135 (488)
36 4gri_A Glutamate--tRNA ligase; 99.1 1.3E-10 4.3E-15 119.4 9.3 99 188-304 24-127 (512)
37 1j09_A Glutamyl-tRNA synthetas 99.0 2.6E-10 8.8E-15 115.7 8.1 96 189-304 2-104 (468)
38 2ja2_A Glutamyl-tRNA synthetas 99.0 7.1E-10 2.4E-14 113.2 9.8 94 189-304 7-109 (498)
39 3o0a_A Leucyl-tRNA synthetase 98.1 1.6E-06 5.6E-11 79.4 4.4 59 48-110 1-70 (219)
40 1wkb_A Leucyl-tRNA synthetase; 97.6 8.6E-05 2.9E-09 80.0 6.9 44 53-108 210-253 (810)
41 2ajg_A Leucyl-tRNA synthetase; 97.3 0.0002 6.7E-09 64.3 4.9 45 50-108 10-54 (196)
42 1wny_A Isoleucyl-tRNA syntheta 97.1 0.0004 1.4E-08 61.7 4.4 53 49-109 2-54 (186)
43 1wka_A Valyl-tRNA synthetase; 95.9 0.0083 2.8E-07 51.2 5.0 36 53-103 7-42 (147)
44 3gdz_A Arginyl-tRNA synthetase 95.9 0.0017 5.8E-08 52.8 0.5 43 79-126 54-96 (109)
45 2dlc_X Tyrosyl-tRNA synthetase 95.5 0.028 9.7E-07 55.5 7.9 74 187-273 39-117 (394)
46 1n3l_A Tyrosyl-tRNA synthetase 94.6 0.089 3E-06 51.5 8.4 68 189-273 37-113 (372)
47 3tzl_A Tryptophanyl-tRNA synth 94.6 0.03 1E-06 53.8 4.9 65 196-273 11-75 (322)
48 2cyb_A Tyrosyl-tRNA synthetase 94.4 0.17 5.8E-06 48.4 9.9 73 188-273 33-105 (323)
49 2wfd_A Leucyl-tRNA synthetase, 93.7 0.035 1.2E-06 51.5 3.1 32 74-109 30-61 (252)
50 2wfg_A Cytosolic leucyl-tRNA s 93.4 0.04 1.4E-06 51.4 3.0 32 74-109 33-64 (261)
51 1i6k_A TRPRS, tryptophanyl-tRN 93.2 0.096 3.3E-06 50.4 5.5 65 196-273 9-73 (328)
52 2el7_A Tryptophanyl-tRNA synth 92.7 0.15 5.3E-06 49.1 6.2 68 196-273 9-77 (337)
53 2g36_A Tryptophanyl-tRNA synth 92.6 0.16 5.4E-06 49.1 6.1 67 196-273 20-86 (340)
54 3a04_A Tryptophanyl-tRNA synth 92.0 0.51 1.8E-05 46.1 9.0 75 187-273 70-144 (372)
55 3jxe_A Tryptophanyl-tRNA synth 91.8 0.27 9.3E-06 48.4 6.7 75 187-273 73-148 (392)
56 2zp1_A Tyrosyl-tRNA synthetase 91.6 0.34 1.2E-05 46.2 7.1 71 188-271 29-99 (314)
57 2cya_A Tyrosyl-tRNA synthetase 91.3 0.2 6.9E-06 48.8 5.3 75 188-273 36-110 (364)
58 3sz3_A Tryptophanyl-tRNA synth 90.5 0.27 9.3E-06 47.5 5.3 65 196-273 14-78 (341)
59 3prh_A Tryptophanyl-tRNA synth 89.5 0.34 1.2E-05 47.7 5.0 70 190-273 38-107 (388)
60 3n9i_A Tryptophanyl-tRNA synth 88.1 0.57 2E-05 45.3 5.5 65 196-273 23-87 (346)
61 1yi8_B Tryptophanyl-tRNA synth 87.8 0.43 1.5E-05 46.3 4.4 65 197-273 31-95 (351)
62 3vgj_A Tyrosyl-tRNA synthetase 87.6 0.55 1.9E-05 45.9 5.1 70 195-273 63-132 (373)
63 3hzr_A Tryptophanyl-tRNA synth 87.4 1.7 5.9E-05 42.6 8.5 75 187-273 82-156 (386)
64 2yy5_A Tryptophanyl-tRNA synth 87.1 0.92 3.1E-05 43.8 6.4 64 197-273 13-76 (348)
65 1wz2_A Leucyl-tRNA synthetase; 86.5 0.64 2.2E-05 50.9 5.4 46 52-109 209-254 (967)
66 2cyc_A Tyrosyl-tRNA synthetase 86.4 1.1 3.7E-05 43.8 6.4 70 196-273 41-114 (375)
67 3hv0_A Tryptophanyl-tRNA synth 86.2 1.9 6.6E-05 42.3 8.2 75 187-273 74-150 (393)
68 3p0j_A Tyrosyl-tRNA synthetase 85.3 1.6 5.4E-05 46.1 7.5 71 194-273 46-116 (690)
69 1jil_A Tyrrs, tyrosyl-tRNA syn 84.7 0.93 3.2E-05 45.0 5.1 74 193-272 37-113 (420)
70 2ip1_A Tryptophanyl-tRNA synth 82.7 3.3 0.00011 41.2 8.1 76 187-273 102-178 (432)
71 2j5b_A Tyrosyl-tRNA synthetase 82.5 2.2 7.5E-05 41.1 6.6 76 188-273 41-116 (348)
72 1y42_X Tyrosyl-tRNA synthetase 82.3 1.3 4.5E-05 43.5 5.0 34 194-231 70-104 (392)
73 3foc_A Tryptophanyl-tRNA synth 82.3 3.1 0.00011 41.6 7.8 76 187-273 91-167 (451)
74 1r6t_A Tryptophanyl-tRNA synth 80.1 1.9 6.5E-05 43.5 5.4 75 187-273 155-230 (477)
75 1r6u_A Tryptophanyl-tRNA synth 79.8 2.6 8.9E-05 42.0 6.2 75 187-273 108-183 (437)
76 1lko_A Rubrerythrin all-iron(I 79.3 2.1 7.2E-05 37.7 4.9 54 282-337 128-181 (191)
77 1ile_A Ilers, isoleucyl-tRNA s 79.2 1.1 3.8E-05 48.0 3.6 59 288-361 362-420 (821)
78 2ts1_A Tyrosyl-tRNA synthetase 78.5 1.8 6E-05 43.0 4.5 69 194-267 36-107 (419)
79 2yxn_A Tyrosyl-tRNA synthetase 76.5 1.8 6.1E-05 41.3 3.8 33 195-231 40-73 (322)
80 2pid_A Tyrosyl-tRNA synthetase 76.0 2.1 7.3E-05 41.4 4.2 33 195-231 53-86 (356)
81 3i05_A Tryptophanyl-tRNA synth 75.1 6.7 0.00023 38.5 7.6 75 187-273 78-153 (395)
82 1gax_A Valrs, valyl-tRNA synth 72.8 1.7 5.8E-05 47.0 2.9 36 53-103 198-233 (862)
83 2jan_A Tyrosyl-tRNA synthetase 72.4 2.7 9.2E-05 41.8 4.0 34 194-231 38-72 (432)
84 1h3f_A Tyrosyl-tRNA synthetase 70.2 3.1 0.00011 41.3 3.9 35 194-232 43-78 (432)
85 3tze_A Tryptophanyl-tRNA synth 69.5 11 0.00039 37.0 7.7 75 187-273 101-176 (406)
86 3p0j_A Tyrosyl-tRNA synthetase 68.5 22 0.00077 37.3 10.2 75 187-271 382-457 (690)
87 1ffy_A Isoleucyl-tRNA syntheta 67.3 0.92 3.1E-05 49.4 -0.7 54 49-110 204-257 (917)
88 1yuz_A Nigerythrin; rubrythrin 63.2 4.2 0.00015 36.1 3.0 47 283-338 150-197 (202)
89 4ayb_P DNA-directed RNA polyme 61.7 5.1 0.00018 27.3 2.4 32 309-340 3-36 (48)
90 2kdx_A HYPA, hydrogenase/ureas 60.3 13 0.00043 29.9 5.1 83 253-337 8-100 (119)
91 3pwf_A Rubrerythrin; non heme 58.7 9.4 0.00032 32.9 4.3 53 281-338 112-164 (170)
92 2lcq_A Putative toxin VAPC6; P 57.1 4 0.00014 34.6 1.7 36 305-342 128-163 (165)
93 3a43_A HYPD, hydrogenase nicke 57.1 33 0.0011 28.4 7.3 94 252-346 5-127 (139)
94 2jne_A Hypothetical protein YF 49.2 7.6 0.00026 30.6 1.9 45 297-341 20-75 (101)
95 3pz6_A Leurs, leucyl-tRNA synt 46.6 11 0.00039 35.6 3.0 31 75-109 81-111 (311)
96 2k5c_A Uncharacterized protein 39.1 1.6 5.4E-05 33.3 -3.3 30 329-358 10-39 (95)
97 1zvf_A 3-hydroxyanthranilate 3 37.5 15 0.0005 32.0 2.1 32 306-337 121-171 (176)
98 1yfu_A 3-hydroxyanthranilate-3 37.4 14 0.00046 32.2 1.8 33 306-338 119-170 (174)
99 1rqg_A Methionyl-tRNA syntheta 32.4 13 0.00045 39.1 1.1 28 18-48 193-221 (722)
100 2k53_A A3DK08 protein; NESG, C 29.9 23 0.00077 26.3 1.8 37 225-261 21-63 (76)
101 2gmg_A Hypothetical protein PF 26.3 74 0.0025 25.2 4.2 47 287-336 47-93 (105)
102 1q14_A HST2 protein; histone d 26.3 69 0.0023 30.8 4.9 36 309-346 144-188 (361)
103 2k5e_A Uncharacterized protein 25.5 27 0.00092 25.6 1.5 36 226-261 24-65 (73)
104 2w57_A Ferric uptake regulatio 22.9 2.7E+02 0.0092 22.6 7.5 48 286-339 52-102 (150)
105 3s2u_A UDP-N-acetylglucosamine 22.4 73 0.0025 29.9 4.3 35 186-230 3-37 (365)
106 3mwm_A ZUR, putative metal upt 22.1 2.8E+02 0.0097 22.1 7.4 49 286-339 48-99 (139)
107 2o03_A Probable zinc uptake re 21.2 2.8E+02 0.0095 21.8 7.1 48 286-339 45-95 (131)
108 3irb_A Uncharacterized protein 21.0 1.1E+02 0.0038 25.2 4.7 43 289-341 33-76 (145)
No 1
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=1.7e-41 Score=366.58 Aligned_cols=176 Identities=54% Similarity=1.012 Sum_probs=142.2
Q ss_pred CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy7914 184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKS 263 (365)
Q Consensus 184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~ 263 (365)
++++++|+++||||||+|||||+|+++++|+++||+||+||+|++++|+|+||+||+..|.+.|++|.+++.++.+.|++
T Consensus 51 ~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~ 130 (880)
T 4arc_A 51 SKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKN 130 (880)
T ss_dssp TSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEee
Q psy7914 264 QLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLS 343 (365)
Q Consensus 264 ~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~ 343 (365)
+|++||+++||+++++|+++.|.+.++++|.+|+++|+||++.+.+||||.|+|+|++.||. +|+|++||.++|+++++
T Consensus 131 ~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~-~g~~~~~g~~ve~~~~~ 209 (880)
T 4arc_A 131 QLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVI-DGCCWRCDTKVERKEIP 209 (880)
T ss_dssp HHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEEEECC-------------------------------CEE
T ss_pred HHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEeceeEeecCCcCCEecchhhh-cCcCcCCCCccEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999994 89999999999999999
Q ss_pred eeeEeCchhHHHHHhhh
Q psy7914 344 QWFIRTTRLANLVSLVD 360 (365)
Q Consensus 344 ~~ff~Ls~~~~~L~~~~ 360 (365)
+|||+|++|+++|.++.
T Consensus 210 ~~f~~i~~y~~~Ll~~l 226 (880)
T 4arc_A 210 QWFIKITAYADELLNDL 226 (880)
T ss_dssp EEEECGGGGHHHHHHHG
T ss_pred ceEEeechhHHHHHHHH
Confidence 99999999999998775
No 2
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=7e-41 Score=346.05 Aligned_cols=175 Identities=21% Similarity=0.306 Sum_probs=166.7
Q ss_pred CCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy7914 185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ 264 (365)
Q Consensus 185 ~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~ 264 (365)
.++|+|++|+|||||.||||||++++++|+++||+||+||+|++++|+||||++|+.+|+++|++|+++++++.+.|+++
T Consensus 8 ~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~ 87 (542)
T 3u1f_A 8 EKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKC 87 (542)
T ss_dssp CCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc--------cCCCccCCCCc
Q psy7914 265 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD--------EQGISWRSGAR 336 (365)
Q Consensus 265 l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve--------~~~~c~~~g~~ 336 (365)
+++|||++|| +++|+++.|.+.|+++|.+|+++|+||++.+.++||++|++||++++|+ .++.|..||.+
T Consensus 88 ~~~lgi~~D~--~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~~g~~~~~~~~sg~~ 165 (542)
T 3u1f_A 88 FEQMDYSIDY--FIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDKDGNPCKVSLESGHV 165 (542)
T ss_dssp HHHHTCCCSE--EEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTCCB
T ss_pred HHHhCCccCc--CccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhccccccCccccccCCCCCc
Confidence 9999999995 5789999999999999999999999999999999999999999999986 23468899999
Q ss_pred cEEEEeeeeeEeCchhHHHHHhhhc
Q psy7914 337 VEKRRLSQWFIRTTRLANLVSLVDS 361 (365)
Q Consensus 337 ~e~~~~~~~ff~Ls~~~~~L~~~~~ 361 (365)
+|.+.+++|||++++|+++|.++..
T Consensus 166 ve~~~~~~~f~~l~~~~~~l~~~~~ 190 (542)
T 3u1f_A 166 VTWVSEENYMFRLSAFRERLLEWYH 190 (542)
T ss_dssp EEEEEEEEEEECGGGGHHHHHHHHH
T ss_pred ceeeccccceecchhHHHHHHHHHh
Confidence 9999999999999999999998764
No 3
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=1.6e-39 Score=352.42 Aligned_cols=176 Identities=49% Similarity=0.964 Sum_probs=169.2
Q ss_pred CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy7914 184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKS 263 (365)
Q Consensus 184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~ 263 (365)
++++++++++||||||+|||||+|+++++|+++||+||+||+|++++|+||||+||+..|.+.|++|+++++++.+.|++
T Consensus 31 ~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~ 110 (878)
T 2v0c_A 31 GRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKE 110 (878)
T ss_dssp ---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccC-CCCccEEEEe
Q psy7914 264 QLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWR-SGARVEKRRL 342 (365)
Q Consensus 264 ~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~-~g~~~e~~~~ 342 (365)
+|++|||++||++++.|+++.|.+.++++|.+|+++|+||++.+.++||+.|+|+|++.||+ +|+|+. ||.+++++++
T Consensus 111 ~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~~~~~v~w~p~~~t~La~~ev~-~g~~~~~~~~~~~~~~~ 189 (878)
T 2v0c_A 111 SLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVV-EGRCWRHEDTPVEKREL 189 (878)
T ss_dssp HHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEE-TTEESSCTTCBCEEEEE
T ss_pred HHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEEcceeEEEeCCCCCCcCHHHHh-cCCCcccCCCceEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999996 889999 9999999999
Q ss_pred eeeeEeCchhHHHHHhhh
Q psy7914 343 SQWFIRTTRLANLVSLVD 360 (365)
Q Consensus 343 ~~~ff~Ls~~~~~L~~~~ 360 (365)
++|||+|++|+++|.++.
T Consensus 190 ~~~f~~l~~~~~~L~~~l 207 (878)
T 2v0c_A 190 EQWYLRITAYAERLLKDL 207 (878)
T ss_dssp EEEEECGGGGHHHHHHTT
T ss_pred ceeeEecchhHHHHHHHh
Confidence 999999999999988765
No 4
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=1.9e-39 Score=345.84 Aligned_cols=174 Identities=25% Similarity=0.335 Sum_probs=165.6
Q ss_pred CceEEEecCCCCCCCCchHHHHH-HHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy7914 186 DNFYVLSMFPYPSGSLHMGHVRV-YTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ 264 (365)
Q Consensus 186 ~~~~I~~~~PnpnG~LHiGHar~-~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~ 264 (365)
++++|++++|||||+|||||+++ ++++|+++||+||+||+|++++|+|+||+||+.+|++.|++|+++++++.+.|+++
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~ 81 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKIT 81 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 47999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc-------------------
Q psy7914 265 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD------------------- 325 (365)
Q Consensus 265 l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve------------------- 325 (365)
+++|||++| .+++|+++.|.+.++++|.+|+++|+||++.+.+|||+.|++||+|++|+
T Consensus 82 ~~~lgis~D--~~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~c~~~ 159 (722)
T 1rqg_A 82 FQRAKISFD--FFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVC 159 (722)
T ss_dssp HHHHTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTTCSSS
T ss_pred HHHhCCCCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcccccCccCCccCCcchhhhc
Confidence 999999988 46889999999999999999999999999999999999999999998764
Q ss_pred ---------cCCCccCCCCccEEEEeeeeeEeCchhHHHHHhhhc
Q psy7914 326 ---------EQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDS 361 (365)
Q Consensus 326 ---------~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~~ 361 (365)
.+|+|++||.+++++.++||||+|++|+++|.+++.
T Consensus 160 G~~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~ 204 (722)
T 1rqg_A 160 GRPLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIE 204 (722)
T ss_dssp CCCCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHH
T ss_pred ccccChhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHH
Confidence 246788899999999999999999999999998873
No 5
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=7.4e-38 Score=325.10 Aligned_cols=180 Identities=22% Similarity=0.313 Sum_probs=165.0
Q ss_pred CCCCCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHH
Q psy7914 180 EGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIA 259 (365)
Q Consensus 180 ~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~ 259 (365)
.++.++++++|+.++|||||+|||||+|+++++|+++||+|++|++|.+++|+||||++|+..|++.|+++.++++++.+
T Consensus 12 ~~~~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~ 91 (560)
T 3h99_A 12 SMTQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQ 91 (560)
T ss_dssp -----CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHH
Confidence 34556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc--------------
Q psy7914 260 TMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD-------------- 325 (365)
Q Consensus 260 ~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve-------------- 325 (365)
.|+++|++|||++| .+++|+++.|.+.++++|.+|.++|+||++++.+|||+.|+++|++.+|+
T Consensus 92 ~~~~~~~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd 169 (560)
T 3h99_A 92 EHQTDFAGFNISYD--NYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGD 169 (560)
T ss_dssp HHHHHHHHTTCCCS--EEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETT
T ss_pred HHHHHHHHcCCCCC--CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccc
Confidence 99999999999888 77889999999999999999999999999999999999999999998874
Q ss_pred --------------cCCCccCCCCccEEEEeeeeeEeCchhHHHHHhhhc
Q psy7914 326 --------------EQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDS 361 (365)
Q Consensus 326 --------------~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~~ 361 (365)
.+++|.+||.+++++.+++|||+|++|+++|.++..
T Consensus 170 ~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~ 219 (560)
T 3h99_A 170 NCEVCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTR 219 (560)
T ss_dssp BCTTTCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHH
T ss_pred hhhhccccCChhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHH
Confidence 123456677899999999999999999999988874
No 6
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=3.2e-37 Score=318.74 Aligned_cols=175 Identities=21% Similarity=0.388 Sum_probs=167.0
Q ss_pred CCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy7914 185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ 264 (365)
Q Consensus 185 ~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~ 264 (365)
+++++|+.|+|||||+|||||+|+++++|+++||+|++|++|.+++|+||||++|+..|.+.|.+|.++++++.+.|+++
T Consensus 24 ~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 103 (536)
T 4dlp_A 24 REKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRM 103 (536)
T ss_dssp CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccC--C-CccCCCCccEEEE
Q psy7914 265 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQ--G-ISWRSGARVEKRR 341 (365)
Q Consensus 265 l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~--~-~c~~~g~~~e~~~ 341 (365)
|++|||++| .+++|+++.|.+.++++|.+|.++|++|++++.+|||+.|++++++.+++.+ | .|..||.++|++.
T Consensus 104 l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~~g~~c~~~g~~~e~~~ 181 (536)
T 4dlp_A 104 AEVLNSSND--DYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQGTPVEWVE 181 (536)
T ss_dssp HHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECTTSCEECTTSSBCEEEE
T ss_pred HHHcCCCCC--cceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCCCCCcccCCCCcceEEe
Confidence 999999998 6788999999999999999999999999999999999999999999999642 3 5899999999999
Q ss_pred eeeeeEeCchhHHHHHhhhc
Q psy7914 342 LSQWFIRTTRLANLVSLVDS 361 (365)
Q Consensus 342 ~~~~ff~Ls~~~~~L~~~~~ 361 (365)
+++|||+|++|+++|.++..
T Consensus 182 ~~~~f~~l~~~~~~l~~~~~ 201 (536)
T 4dlp_A 182 EESYFFRLSAYQDKLLDLYE 201 (536)
T ss_dssp EEEEEECGGGGHHHHHHHHH
T ss_pred ccceEEecHHHHHHHHHHHH
Confidence 99999999999999988864
No 7
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=3.7e-37 Score=315.32 Aligned_cols=174 Identities=22% Similarity=0.331 Sum_probs=166.5
Q ss_pred CCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy7914 185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ 264 (365)
Q Consensus 185 ~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~ 264 (365)
+++++|+.|+|||||+|||||+|+++++|+++||+|++|++|++++|+|+||++|+..|++.|+++.++++++.+.|+++
T Consensus 2 ~~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 81 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRA 81 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeee
Q psy7914 265 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQ 344 (365)
Q Consensus 265 l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~ 344 (365)
|++|||++| .+++|+++.|.+.++++|.+|+++|+||++++.++||+.|++++++.++. +|.|+.||.+++.+.+++
T Consensus 82 ~~~lgi~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~-~g~c~~~~~~v~~~~~~~ 158 (500)
T 2d5b_A 82 WDLLGIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELV-EGLCPIHGRPVERRKEGN 158 (500)
T ss_dssp HHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSB-TTBCTTTCSBCEEEEEEE
T ss_pred HHHhCCcCC--CCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhcc-CCcCCCCCCeeeEEecCc
Confidence 999999888 66889999999999999999999999999999999999999999999984 789999999999999999
Q ss_pred eeEeCchhHHHHHhhhc
Q psy7914 345 WFIRTTRLANLVSLVDS 361 (365)
Q Consensus 345 ~ff~Ls~~~~~L~~~~~ 361 (365)
|||+|++|+++|.++..
T Consensus 159 wf~~l~~~~~~l~~~~~ 175 (500)
T 2d5b_A 159 YFFRMEKYRPWLQEYIQ 175 (500)
T ss_dssp EEECGGGGHHHHHHHHH
T ss_pred eEEEcHHHHHHHHHHHH
Confidence 99999999999887654
No 8
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=3.9e-37 Score=317.10 Aligned_cols=176 Identities=22% Similarity=0.354 Sum_probs=166.4
Q ss_pred CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy7914 184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKS 263 (365)
Q Consensus 184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~ 263 (365)
++++++|++++|||||+|||||+|+++++|+++||+|++|++|.+++|+|+||++|+..|++.|.+|.++++++.+.|++
T Consensus 10 ~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 89 (524)
T 2x1l_A 10 GSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQR 89 (524)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccC---CCcc-CCCCccEE
Q psy7914 264 QLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQ---GISW-RSGARVEK 339 (365)
Q Consensus 264 ~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~---~~c~-~~g~~~e~ 339 (365)
++++|||++| .+++|+++.|.+.++++|.+|+++|+||++++.+|||+.|++++++.+++.. ..|+ .||.+++.
T Consensus 90 ~~~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~ 167 (524)
T 2x1l_A 90 LQEKLNISFD--RFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTW 167 (524)
T ss_dssp HHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEE
T ss_pred HHHHcCCcCC--CCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcceE
Confidence 9999999988 7788999999999999999999999999999999999999999999998642 3588 99999999
Q ss_pred EEeeeeeEeCchhHHHHHhhhc
Q psy7914 340 RRLSQWFIRTTRLANLVSLVDS 361 (365)
Q Consensus 340 ~~~~~~ff~Ls~~~~~L~~~~~ 361 (365)
+.+++|||+|++|+++|.++..
T Consensus 168 ~~~~qwF~~l~~~~~~l~~~~~ 189 (524)
T 2x1l_A 168 TEEQTYFFRLSAYTDRLLALYE 189 (524)
T ss_dssp EEEEEEEECGGGSHHHHHHHHH
T ss_pred EecCCeEeeHHHHHHHHHHHHH
Confidence 9999999999999999987764
No 9
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=2.3e-37 Score=321.83 Aligned_cols=175 Identities=23% Similarity=0.317 Sum_probs=165.2
Q ss_pred CCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy7914 185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ 264 (365)
Q Consensus 185 ~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~ 264 (365)
+++++|+.++|||||+|||||+|+++++|+++||+|++|++|.+++|+||||++|+..|++.|.+|+++++++.+.|+++
T Consensus 25 ~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~~~ 104 (564)
T 3kfl_A 25 QKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQC 104 (564)
T ss_dssp CCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccC-----CCc---cCCCCc
Q psy7914 265 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQ-----GIS---WRSGAR 336 (365)
Q Consensus 265 l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~-----~~c---~~~g~~ 336 (365)
|++|||++| .+++|+++.|.+.++++|++|.++|+||++.+.+|||+.|+++|++.++... ..| ..||.+
T Consensus 105 ~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~~g~~c~~~~~~g~~ 182 (564)
T 3kfl_A 105 FQEMNYDMN--YFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRDGKPCKVSLESGHV 182 (564)
T ss_dssp HHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTSCB
T ss_pred HHHcCCCCC--ccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCcCCCCCEeccccCCCCc
Confidence 999999999 6788999999999999999999999999999999999999999999998522 345 248999
Q ss_pred cEEEEeeeeeEeCchhHHHHHhhhc
Q psy7914 337 VEKRRLSQWFIRTTRLANLVSLVDS 361 (365)
Q Consensus 337 ~e~~~~~~~ff~Ls~~~~~L~~~~~ 361 (365)
++++.+++|||+|++|+++|.+++.
T Consensus 183 ~~~~~~~~~f~~l~~~~~~l~~~~~ 207 (564)
T 3kfl_A 183 VTWVEEENYMFRLSAFRERLLKYFH 207 (564)
T ss_dssp CEEEEEEEEEECGGGGHHHHHHHHH
T ss_pred cEEEecceeEEEHHHHHHHHHHHHH
Confidence 9999999999999999999998874
No 10
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=1.3e-37 Score=318.75 Aligned_cols=175 Identities=23% Similarity=0.325 Sum_probs=136.2
Q ss_pred CCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy7914 185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ 264 (365)
Q Consensus 185 ~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~ 264 (365)
+++++|+.++|||||+|||||+|+++++|+++||+|++|++|++++|+|+||++|+.+|++.|.+|.++++++.+.|+++
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 83 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKL 83 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeee
Q psy7914 265 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQ 344 (365)
Q Consensus 265 l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~ 344 (365)
+++|||++| .+++|+++.|.+.++++|.+|+++|+||++.+.++||+.|++++++.++...|.|+.||.+++.+.+.+
T Consensus 84 ~~~lgi~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 161 (497)
T 2csx_A 84 WEFLKIEYT--KFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPS 161 (497)
T ss_dssp HHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC---------------------------------CCEE
T ss_pred HHHhCCcCC--CCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCCCCeEEecCc
Confidence 999999888 678899999999999999999999999999999999999999999999964489999999999999999
Q ss_pred eeEeCchhHHHHHhhhc
Q psy7914 345 WFIRTTRLANLVSLVDS 361 (365)
Q Consensus 345 ~ff~Ls~~~~~L~~~~~ 361 (365)
|||+|++|+++|.++..
T Consensus 162 wf~~l~~~~~~l~~~~~ 178 (497)
T 2csx_A 162 YFFRLSKYQDKLLELYE 178 (497)
T ss_dssp EEECTTSSHHHHHHHHH
T ss_pred eEEEcHHHHHHHHHHHH
Confidence 99999999999887754
No 11
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=6.8e-37 Score=333.15 Aligned_cols=142 Identities=28% Similarity=0.570 Sum_probs=136.6
Q ss_pred CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCH------------H
Q psy7914 184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDP------------R 251 (365)
Q Consensus 184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~------------~ 251 (365)
++++|+|+++||||||.|||||+++++++|+++||+||+|++|++++|||+||+||+.+|++.|+++ +
T Consensus 46 ~~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~ 125 (917)
T 1ffy_A 46 GNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCK 125 (917)
T ss_dssp TSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHH
T ss_pred CCCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHH
Confidence 4467999999999999999999999999999999999999999999999999999999999999875 5
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc
Q psy7914 252 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD 325 (365)
Q Consensus 252 e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve 325 (365)
+|+.++.+.++++|++||+++||++++.|+++.|.+.++++|.+|+++|+||++.++++|||.|+|+|+++||+
T Consensus 126 ~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~kGliYr~~~~v~wcp~~~T~Lae~eVe 199 (917)
T 1ffy_A 126 EFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIE 199 (917)
T ss_dssp HHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEE
T ss_pred HHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHcCCeEecccceeccCCCCcCcchhhhh
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999885
No 12
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=2.6e-36 Score=326.45 Aligned_cols=142 Identities=31% Similarity=0.480 Sum_probs=133.3
Q ss_pred CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHH----cCCCH---------
Q psy7914 184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ----HGIDP--------- 250 (365)
Q Consensus 184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~----~g~~~--------- 250 (365)
++++++|++|||||||.|||||+++++++|+++||+||+|++|++++|+|+||+|++.++++ .|+++
T Consensus 32 ~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~ 111 (862)
T 1gax_A 32 GKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFL 111 (862)
T ss_dssp CSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHH
T ss_pred CCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999998874 46554
Q ss_pred ---HHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc
Q psy7914 251 ---REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD 325 (365)
Q Consensus 251 ---~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve 325 (365)
++|++++.+.|+++|++||+++||++++.|+|+.|.+.|+++|.+|+++|+||++.+.++|||.|+|+||+.||+
T Consensus 112 ~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~kGliYrg~~~v~wcp~~~T~Lsd~EV~ 189 (862)
T 1gax_A 112 ERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVE 189 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTTEEECGGGEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecccccccCCCcCccccccccc
Confidence 467899999999999999999999999999999999999999999999999999999999999999999998764
No 13
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=1.1e-36 Score=328.79 Aligned_cols=141 Identities=26% Similarity=0.404 Sum_probs=134.0
Q ss_pred CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHc-CCCH------------
Q psy7914 184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH-GIDP------------ 250 (365)
Q Consensus 184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~-g~~~------------ 250 (365)
++++++|+.+||||||+|||||+++++++|+++||+||+|++|++++|+|+||+||+..|++. |.++
T Consensus 36 ~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f 115 (821)
T 1ile_A 36 GGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERF 115 (821)
T ss_dssp TSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHH
T ss_pred CCCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHHhcccccchHhhcCHHHH
Confidence 346799999999999999999999999999999999999999999999999999999999985 8763
Q ss_pred ----HHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCcccccccc
Q psy7914 251 ----REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQV 324 (365)
Q Consensus 251 ----~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~ev 324 (365)
+++++++.+.++++|++||+++||+++++|+|+.|.+.++++|.+|+++|+||++.++++|||.|+|+|+|.||
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lad~ev 193 (821)
T 1ile_A 116 NQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEV 193 (821)
T ss_dssp HHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTTEECCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHHHHcCCeeecCcceEecCCCCCcccHhHh
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999888
No 14
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=99.97 E-value=5.3e-32 Score=292.04 Aligned_cols=143 Identities=34% Similarity=0.609 Sum_probs=134.8
Q ss_pred CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHc-----------------
Q psy7914 184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH----------------- 246 (365)
Q Consensus 184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~----------------- 246 (365)
++++++|+++||||||+|||||+++++++|+++||+||+||+|++++|+|+||+||+..|.+.
T Consensus 32 ~~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~~~~~~~~g~ 111 (810)
T 1wkb_A 32 KEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKV 111 (810)
T ss_dssp GGGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHTTCHHHHHHHHHTSCC
T ss_pred CCCcEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcccCchHHHHHHHHhCC
Confidence 346899999999999999999999999999999999999999999999999999999887531
Q ss_pred -------CCCHHHHHHHHHHHHHHHHHhcCCCccCCCcccccC--hhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCc
Q psy7914 247 -------GIDPREWTVGNIATMKSQLQGFGCKFNWESELATCD--PKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNT 317 (365)
Q Consensus 247 -------g~~~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d--~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t 317 (365)
+.+++++++++.+.|+++|++|||++||++++.|++ +.|.+.++++|.+|+++|+||++.+++||||.|+|
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t 191 (810)
T 1wkb_A 112 PEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGT 191 (810)
T ss_dssp CHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHHHHHHHHHHHHHCCCEEECCeeeeccCCcCC
Confidence 346788999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred ccccccccc
Q psy7914 318 VLADEQVDE 326 (365)
Q Consensus 318 ~Ls~~eve~ 326 (365)
+|++.||++
T Consensus 192 ~La~~ev~~ 200 (810)
T 1wkb_A 192 PLGDHDLME 200 (810)
T ss_dssp ECCTTCCSB
T ss_pred CccHHHHhc
Confidence 999999974
No 15
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=99.97 E-value=3.3e-32 Score=298.23 Aligned_cols=141 Identities=34% Similarity=0.613 Sum_probs=134.1
Q ss_pred CceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHc---------------C---
Q psy7914 186 DNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH---------------G--- 247 (365)
Q Consensus 186 ~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~---------------g--- 247 (365)
++++|+++||||||.|||||+++++++|+++||+||+||+|++.+|||+||+||+..|.+. |
T Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~ 113 (967)
T 1wz2_A 34 KKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPE 113 (967)
T ss_dssp GCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCH
T ss_pred CcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhccchhHHHHHHHhcCCCH
Confidence 5799999999999999999999999999999999999999999999999999999887542 3
Q ss_pred ------CCHHHHHHHHHHHHHHHHHhcCCCccCCCcccccC--hhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccc
Q psy7914 248 ------IDPREWTVGNIATMKSQLQGFGCKFNWESELATCD--PKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVL 319 (365)
Q Consensus 248 ------~~~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d--~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~L 319 (365)
.+|++|++++.+.++++|++||+++||++++.|+| |.|.+.++++|.+|+++|+||++.++++|||.|+|+|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~~~F~~L~~kGliyr~~~~v~wcp~~~T~L 193 (967)
T 1wz2_A 114 EILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPL 193 (967)
T ss_dssp HHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHHHHHHHHHHTTTTTCEEECCCCCEECTTTSCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHHHHHHHHHHHHHCCCEEEeceEecccCCCCCCc
Confidence 35788999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred ccccccc
Q psy7914 320 ADEQVDE 326 (365)
Q Consensus 320 s~~eve~ 326 (365)
+|.||++
T Consensus 194 ad~Ev~~ 200 (967)
T 1wz2_A 194 GDHDLME 200 (967)
T ss_dssp CSSSCSS
T ss_pred chhhhcc
Confidence 9999974
No 16
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.93 E-value=1.3e-26 Score=243.55 Aligned_cols=195 Identities=15% Similarity=0.075 Sum_probs=149.8
Q ss_pred CCCCchhhhccccceEEEecC--ccccccccccccCcceeEEEccchhhhhcCCcccccCCCCcccchhhHHHHHHhhhH
Q psy7914 80 LPEDTIEDVAKSQGQYITVKS--SHILASKTKEKLTENVKHQIENKYKSIVSSDPMLRDRKKPVCGESLNQVLKLVCDGV 157 (365)
Q Consensus 80 t~~p~~~~~~~~~g~f~~l~~--~h~l~~~~~a~~~gf~n~~i~n~~~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l 157 (365)
-++|..|+... ...|.. +..+.+.+++| |||||+|....+. ..++..++
T Consensus 54 ~~~P~~iA~~i----~~~l~~~~~~~i~~vevag--GfiN~~l~~~~~~-----------------------~~~~~~i~ 104 (629)
T 2zue_A 54 KRPPIEIAEKI----VEKLKLNLPEGIKDVKAVN--GYINVFIDYPHFA-----------------------RILINDIL 104 (629)
T ss_dssp TSCHHHHHHHH----HHHHTTSCCTTEEEEEEET--TEEEEEECHHHHH-----------------------HHHHHHHH
T ss_pred CCCHHHHHHHH----HHHhhhccCCCeEEEEEcC--CEEEEEECHHHHH-----------------------HHHHHHHH
Confidence 35799999888 555654 45678899999 9999999999544 04444443
Q ss_pred HHHHhhcCCCCCccccCCCCCcCCCCCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCc
Q psy7914 158 YRRRRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGL 237 (365)
Q Consensus 158 y~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~ 237 (365)
..++.||.+..+++. ++.|.+.+|||||||||||+|++|++|+++|++++.||+|.+++++||+|.
T Consensus 105 -------~~~~~yG~~~~~~~~-------~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~ 170 (629)
T 2zue_A 105 -------AKGDRFGSSEIGKGK-------KVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGI 170 (629)
T ss_dssp -------HHGGGTTCCCTTTTC-------EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSH
T ss_pred -------hcchhcCCCccCCCC-------EEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhH
Confidence 345578876544333 688889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHH---------------------------------------HcC--------------------CCHHHHHHHHH
Q psy7914 238 PAENAAH---------------------------------------QHG--------------------IDPREWTVGNI 258 (365)
Q Consensus 238 ~I~~~A~---------------------------------------~~g--------------------~~~~e~~~~~~ 258 (365)
|+...+. +.+ ...+++++.+.
T Consensus 171 Q~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~ 250 (629)
T 2zue_A 171 QFAQVYWGYLRLKEEFERIMNELRERGLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVV 250 (629)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcchhhhhhhcccccccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 9654432 111 22267789999
Q ss_pred HHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEE---eCcceeecCCCCccc
Q psy7914 259 ATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR---KEATVNWDPIDNTVL 319 (365)
Q Consensus 259 ~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~---~~~~v~yc~~~~t~L 319 (365)
+.|++++++|||.+| .+.++++..+...+.+++++|.++|++|+ +....+||..+..+-
T Consensus 251 ~~f~~~~~~L~I~~D--~~~~es~~~~~~~v~~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~~~g 312 (629)
T 2zue_A 251 RAQMVTTYKLGVKYD--LLVWESDIVRRKLFEIALELLSKNENFYIPSDGKYRGAFVMDLRKLF 312 (629)
T ss_dssp HHHHHHHHHHTCCCS--EEEEHHHHHHTTHHHHHHHHHHTSTTEECCSSSTTTTCEEEECTTTC
T ss_pred HHHHHHHHHcCCccc--cccCcCccccchhHHHHHHHHHHCCCccccccCCcCCcEEEECcccC
Confidence 999999999999998 55666666567889999999999999992 333344444555543
No 17
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.92 E-value=2.1e-25 Score=233.14 Aligned_cols=186 Identities=14% Similarity=0.116 Sum_probs=146.5
Q ss_pred CCCchhhhccccceEEEecCccccccccccccCcceeEEEccchhhhhcCCcccccCCCCcccchhhHHHH-HHhhhHHH
Q psy7914 81 PEDTIEDVAKSQGQYITVKSSHILASKTKEKLTENVKHQIENKYKSIVSSDPMLRDRKKPVCGESLNQVLK-LVCDGVYR 159 (365)
Q Consensus 81 ~~p~~~~~~~~~g~f~~l~~~h~l~~~~~a~~~gf~n~~i~n~~~~~~~~~p~~r~~~~~~~~~~~~~~~~-~~~~~ly~ 159 (365)
++|..|+... ...+..+..+.+.+++| | ||||++....+. + ++...+
T Consensus 81 ~~P~~iA~~i----~~~l~~~~~i~~ve~ag-~-fiN~~l~~~~~~------------------------~~~~~~i~-- 128 (607)
T 1f7u_A 81 ANPKDLAVQW----AEKFPCGDFLEKVEANG-P-FIQFFFNPQFLA------------------------KLVIPDIL-- 128 (607)
T ss_dssp CCHHHHHHHH----HHTCCCTTTEEEEEEET-T-EEEEEECHHHHH------------------------HHHHHHHH--
T ss_pred CCHHHHHHHH----HHhccccCceeEEEEcC-C-EEEEEECHHHHH------------------------HHHHHHHH--
Confidence 4799999888 55565555678889999 4 999999999988 4 233333
Q ss_pred HHhhcCCCCCccccCCCCCcCCCCCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchH
Q psy7914 160 RRRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPA 239 (365)
Q Consensus 160 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I 239 (365)
..++.||.+..+.+ ++++|.+.+|||||||||||+|+++++|+++|++++.||+|.++++++|+|.||
T Consensus 129 -----~~~~~~G~~~~~~~-------~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~ 196 (607)
T 1f7u_A 129 -----TRKEDYGSCKLVEN-------KKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQF 196 (607)
T ss_dssp -----HHGGGTTCCCCSSC-------CEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHH
T ss_pred -----hhhhhcCCCcccCC-------CeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHH
Confidence 23456887543332 368888999999999999999999999999999999999999999999999997
Q ss_pred HHHH------------------------------------------------HH------cCCC-----HHHHHHHHHHH
Q psy7914 240 ENAA------------------------------------------------HQ------HGID-----PREWTVGNIAT 260 (365)
Q Consensus 240 ~~~A------------------------------------------------~~------~g~~-----~~e~~~~~~~~ 260 (365)
...+ ++ .|.+ .+++++...+.
T Consensus 197 ~~l~~~~~~~g~~~~~~~~~i~~l~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~ 276 (607)
T 1f7u_A 197 GLLAVGFERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEK 276 (607)
T ss_dssp HHHHHHHHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchhhccCCChHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
Confidence 5443 11 2332 24568899999
Q ss_pred HHHHHHhcCCCccCCCcccccChhhH-HHHHHHHHHHHHCCCEEEeCcceeecCC
Q psy7914 261 MKSQLQGFGCKFNWESELATCDPKYY-KWTQALFLDLYHAGLVYRKEATVNWDPI 314 (365)
Q Consensus 261 i~~~l~~lgI~~D~~~~~~t~d~~~~-~~v~~~f~~L~~kG~Iy~~~~~v~yc~~ 314 (365)
|++++++|||.+| .+...++ |. ..+.++++.|.++|++|+.++.+|++..
T Consensus 277 ~~~~~~~L~V~fD--~~~~ES~--~~~~~~~~vi~~L~~kG~~ye~dGa~~~~~~ 327 (607)
T 1f7u_A 277 YIDTYARLNIKYD--VYSGESQ--VSKESMLKAIDLFKEKGLTHEDKGAVLIDLT 327 (607)
T ss_dssp HHHHHHHTTCCCS--EEEEGGG--CCHHHHHHHHHHHHHTTCEEEETTEEEEEGG
T ss_pred HHHHHHHcCCcce--eecCcch--hhhhHHHHHHHHHHhCCCEEEECCcEEEEec
Confidence 9999999999998 2222222 33 5789999999999999999999998754
No 18
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.91 E-value=3.4e-25 Score=231.46 Aligned_cols=178 Identities=15% Similarity=0.121 Sum_probs=142.7
Q ss_pred CCCchhhhccccceEEEecCccccccccccccCcceeEEEccchhhhhcCCcccccCCCCcccchhhHHHHHHhhhHHHH
Q psy7914 81 PEDTIEDVAKSQGQYITVKSSHILASKTKEKLTENVKHQIENKYKSIVSSDPMLRDRKKPVCGESLNQVLKLVCDGVYRR 160 (365)
Q Consensus 81 ~~p~~~~~~~~~g~f~~l~~~h~l~~~~~a~~~gf~n~~i~n~~~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~ly~~ 160 (365)
++|..|+... ...+..+..+.+.+++| |||||+|....+. ..+....+
T Consensus 49 ~~P~~iA~~i----~~~l~~~~~~~~~~~~g--gfiN~~l~~~~~~-----------------------~~~~~~~~--- 96 (592)
T 1iq0_A 49 KPPQAIAQEL----KDRLPLPEFVEEAVPVG--GYLNFRLRTEALL-----------------------REALRPKA--- 96 (592)
T ss_dssp SCHHHHHHHH----HHTCCCCTTEEEEEEET--TEEEEEECHHHHH-----------------------HHHHSCCC---
T ss_pred CCHHHHHHHH----HHhccccCcEEEEEEcC--CEEEEEECHHHHH-----------------------HHHHHHHH---
Confidence 5799999888 55565555678889999 9999999999644 03333333
Q ss_pred HhhcCCCCCccccCCCCCcCCCCCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHH
Q psy7914 161 RRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAE 240 (365)
Q Consensus 161 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~ 240 (365)
..++.|| ++.|++++|||||||||||+|++|++|+++|++++.||+|.+++++||+|.|+.
T Consensus 97 ----~~~~~~g---------------~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~ 157 (592)
T 1iq0_A 97 ----PFPRRPG---------------VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAA 157 (592)
T ss_dssp ----CCCCEEE---------------EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHH
T ss_pred ----hcCcccC---------------eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHH
Confidence 3455565 389999999999999999999999999999999999999999999999998764
Q ss_pred HHH----------------------------------------------HHcCCCHHHHHHHHHHHHHHHHHhcCCCccC
Q psy7914 241 NAA----------------------------------------------HQHGIDPREWTVGNIATMKSQLQGFGCKFNW 274 (365)
Q Consensus 241 ~~A----------------------------------------------~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D~ 274 (365)
... .+.|. .+++++.+.+.|+++|++|||.+|
T Consensus 158 ~li~~~~~~g~d~~~~~~~d~~~g~~y~~~~~~~~~~~~~~~a~~~~~~~e~g~-~~~~~~~~~~~~~~~~~~LgI~~D- 235 (592)
T 1iq0_A 158 ETLFALRHYGLTWDGKEKYDHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGE-LREEVNRILLAQMATMHALNARYD- 235 (592)
T ss_dssp HHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHCTTTGGGHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHHHHTTCCCS-
T ss_pred HHHHHHHHhCCcccCCCCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHhCCchH-HHHHHHHHHHHHHHHHHHcCCEeE-
Confidence 432 22333 277889999999999999999998
Q ss_pred CCcccccChhhHHHHHHHHHHHHHCCCEE-----EeCcceeec
Q psy7914 275 ESELATCDPKYYKWTQALFLDLYHAGLVY-----RKEATVNWD 312 (365)
Q Consensus 275 ~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy-----~~~~~v~yc 312 (365)
.+.++++..+...+++++++|.++|++| +.++..|+.
T Consensus 236 -~~~~es~~~~~~~v~~~~~~L~~kG~~y~~~~g~~~G~~~~~ 277 (592)
T 1iq0_A 236 -LLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMD 277 (592)
T ss_dssp -EEEEHHHHHHTTHHHHHHHHHTTSTTEECCSSSTTTTCEEEE
T ss_pred -EeccCCcccccchHHHHHHHHHHCCCcccCcccCcCCCEEEe
Confidence 5566766666788999999999999999 556555543
No 19
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.90 E-value=1.5e-23 Score=212.31 Aligned_cols=128 Identities=16% Similarity=0.111 Sum_probs=117.4
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ 266 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~ 266 (365)
++-+...+|||+|++||||+|++|++|+++||+|++||+|.++.|+||+|.+|..+|.+.|.+++++++++.+.|+++++
T Consensus 25 ~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~ 104 (462)
T 3tqo_A 25 KVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEK 104 (462)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45556679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEe-CcceeecCCCCc
Q psy7914 267 GFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRK-EATVNWDPIDNT 317 (365)
Q Consensus 267 ~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~-~~~v~yc~~~~t 317 (365)
+|||.+|+.. +....|...++++|++|+++|++|+. .+.||||+++..
T Consensus 105 ~LgI~~d~~~---praTe~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~~ 153 (462)
T 3tqo_A 105 ALRVLSPDQE---PRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFK 153 (462)
T ss_dssp HHTCCCCSBC---CBGGGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTCT
T ss_pred HcCCCCCccc---cChhhHHHHHHHHHHHHHHCCCEEEecCCcEEecccccc
Confidence 9999998433 23347999999999999999999999 799999998763
No 20
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.90 E-value=1.3e-23 Score=210.68 Aligned_cols=125 Identities=18% Similarity=0.161 Sum_probs=115.0
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ 266 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~ 266 (365)
++.+...+|+|+|++||||+|+++++|+++||+|+.||+|.+++|+||+|.+|+..|.+.|.++.++++.+.+.|+++|+
T Consensus 39 ~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~ 118 (414)
T 3c8z_A 39 TATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMA 118 (414)
T ss_dssp EEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34555668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCC-ccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeC----cceeecCCC
Q psy7914 267 GFGCK-FNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE----ATVNWDPID 315 (365)
Q Consensus 267 ~lgI~-~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~----~~v~yc~~~ 315 (365)
+|||. +| .+.++++ |...++++|++|.++|++|+++ +.+||+.+.
T Consensus 119 ~Lgi~~~d--~~~r~t~--~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~f~~~~ 168 (414)
T 3c8z_A 119 ALRVLPPH--DYVAATD--AIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADA 168 (414)
T ss_dssp HTTCCCCS--EEEEGGG--CHHHHHHHHHHHHHHTSEEECSCSSCCCEEECTTS
T ss_pred HcCCCCCc--ceecccc--hHHHHHHHHHHHHHCCCEEeccCCcCCCEEEEchh
Confidence 99998 88 4555654 8889999999999999999999 889998764
No 21
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.89 E-value=8.7e-23 Score=207.35 Aligned_cols=126 Identities=17% Similarity=0.097 Sum_probs=115.2
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ 266 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~ 266 (365)
++-+...+|+|+|++||||+|++|++|+++||+|+.||+|.+++++||+|.+|...|.+.|.+++++++.+.+.|+++++
T Consensus 22 ~v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~~ 101 (461)
T 1li5_A 22 EVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFD 101 (461)
T ss_dssp EEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CeeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 35555668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCc-cCCCcccccChhhHHHHHHHHHHHHHCCCEEEe-CcceeecCCCC
Q psy7914 267 GFGCKF-NWESELATCDPKYYKWTQALFLDLYHAGLVYRK-EATVNWDPIDN 316 (365)
Q Consensus 267 ~lgI~~-D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~-~~~v~yc~~~~ 316 (365)
+|||.+ | .+.++++ |.+.+++++++|.++|++|+. ++.+|||+.+.
T Consensus 102 ~LgI~~~d--~~~r~t~--~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~ 149 (461)
T 1li5_A 102 ALNILRPD--MEPRATH--HIAEIIELTEQLIAKGHAYVADNGDVMFDVPTD 149 (461)
T ss_dssp HTTCCCCS--BCCBGGG--CHHHHHHHHHHHHHTTSEEECTTSCEEECGGGC
T ss_pred HcCCCCCc--ccccccc--hHHHHHHHHHHHHHCCCEEEecCCCEEEecccc
Confidence 999998 5 3344443 889999999999999999999 99999998863
No 22
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.88 E-value=6.6e-23 Score=208.88 Aligned_cols=125 Identities=16% Similarity=0.117 Sum_probs=101.0
Q ss_pred eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCC----------CCCCchHHHHHHHcCCCHHHHHHHH
Q psy7914 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGW----------DAFGLPAENAAHQHGIDPREWTVGN 257 (365)
Q Consensus 188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~----------Dd~G~~I~~~A~~~g~~~~e~~~~~ 257 (365)
+-+...+|+|+|++||||+|++|++|+++||+|++||+|.++.|+ |+||++|+.+|++.|++|+++++++
T Consensus 43 v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~~ 122 (501)
T 3sp1_A 43 VKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEFF 122 (501)
T ss_dssp EEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHHHHH
T ss_pred ceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHHH
Confidence 444556799999999999999999999999999999999999665 5559999999999999999999999
Q ss_pred HHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCC
Q psy7914 258 IATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPID 315 (365)
Q Consensus 258 ~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~ 315 (365)
.+.|++++++|||.+|| +. +.++.|+..++++|++|+++|++|++++.||||+++
T Consensus 123 ~~~f~~d~~~Lgi~~d~--~~-~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~ 177 (501)
T 3sp1_A 123 TEAFFNDCRKLNIVYPD--KV-LVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSC 177 (501)
T ss_dssp HHHHHHHHHHTTCCCCS--EE-EEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGG
T ss_pred HHHHHHHHHHcCCCCCC--cc-cCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCc
Confidence 99999999999999994 23 557899999999999999999999999999999987
No 23
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.85 E-value=2.8e-21 Score=196.18 Aligned_cols=137 Identities=21% Similarity=0.268 Sum_probs=109.7
Q ss_pred CCCCCccccCCCCCcCCCCCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHH
Q psy7914 165 SSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAH 244 (365)
Q Consensus 165 ~~~~~~g~~~~~~~~~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~ 244 (365)
..++.||+... ++ ++++|+++|||||||||+||+|+++++|+++|++++.||+|++++++||+|+||...+.
T Consensus 17 ~~~~~yG~~~~-~~-------~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~~ 88 (464)
T 3fnr_A 17 TNPNDFTKGEK-KQ-------ESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGL 88 (464)
T ss_dssp HSGGGTTCCCC-CS-------CEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHH
T ss_pred HhHHhcCCCCC-CC-------CEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccHHHHHHHH
Confidence 45667887643 22 37899999999999999999999999999999999999999999999999999966642
Q ss_pred -------H--cCCC---H---------------------------------HHH-HHHHHHHHHHHHHhcCCCcc-CCCc
Q psy7914 245 -------Q--HGID---P---------------------------------REW-TVGNIATMKSQLQGFGCKFN-WESE 277 (365)
Q Consensus 245 -------~--~g~~---~---------------------------------~e~-~~~~~~~i~~~l~~lgI~~D-~~~~ 277 (365)
+ .|.+ | +++ ++..++.|+++|++|||.|| |+.+
T Consensus 89 ~~~~~y~~~~~~~~~~~p~~~y~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~fD~~~~E 168 (464)
T 3fnr_A 89 SILLSVKESILHENVEYPEQYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKIDSYVSE 168 (464)
T ss_dssp HHHHHHHHHTSCCCCCCCSSCCCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCCSCEEEG
T ss_pred HHHHHHHHHhcCCCCCCchhhcCccHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeecCH
Confidence 1 1211 0 111 35567889999999999999 6555
Q ss_pred ccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCC
Q psy7914 278 LATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPI 314 (365)
Q Consensus 278 ~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~ 314 (365)
.+.++ .+.++++.|.++|++|+++++.|+...
T Consensus 169 ss~~~-----~~~~vv~~L~~~g~~~e~dGa~~~~~~ 200 (464)
T 3fnr_A 169 RSYYD-----ALNATLESLKEHKGIYEQEGKIWLASS 200 (464)
T ss_dssp GGGST-----THHHHHHHHHHTTCEEEETTEEEECGG
T ss_pred HHHHH-----HHHHHHHHHHHCCCEEEeCCeEEEEec
Confidence 44333 679999999999999999999998653
No 24
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.75 E-value=1.8e-18 Score=177.42 Aligned_cols=162 Identities=17% Similarity=0.163 Sum_probs=87.9
Q ss_pred hhhcCCcccccCCCCcccchhhHHHHHHhhhHHHHHhhcCC--CCCcc-ccCCCCCcCCCCCCCceEEEecCCCCCCCCc
Q psy7914 126 SIVSSDPMLRDRKKPVCGESLNQVLKLVCDGVYRRRRSISS--PSDFG-VSSVGGTLEGKRREDNFYVLSMFPYPSGSLH 202 (365)
Q Consensus 126 ~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~--~~~~g-~~~~~~~~~~~~~~~~~~I~~~~PnpnG~LH 202 (365)
.|||++|+||++++++.+.+++.+.+++.+++.++...++. ++.+. +.+..++.++.++..+-+++.++|+|||+||
T Consensus 31 ~~~~~~pelr~~~~e~~~~~~~~v~~vn~~~~e~~~~~l~~~~pe~~~~~~~~~~~~~~L~~~~g~v~tRFaPsPtG~LH 110 (553)
T 3aii_A 31 AVMSNEPELRKMAPQVKEAVEAAVERVNSLSPEEQQQEMERLGLEITERKQKKRKGLRELAGVKGEVVLRFAPNPSGPLH 110 (553)
T ss_dssp --------------------------------------------------------CCCCSSCCSCCEEEECCCSSSSCB
T ss_pred hhhccChhhhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhChhhhhhhhhhcccCCCCCCCCCceEEEeCCCCCCCcc
Confidence 48999999999999999999999999999999888777653 44443 2222334455555555689999999999999
Q ss_pred hHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCccCCCcccccC
Q psy7914 203 MGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCD 282 (365)
Q Consensus 203 iGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d 282 (365)
|||+|++++...+|| .+.|.-++++..+|+. .-..++.+.|.++|++||+.+| .. +..
T Consensus 111 IGhaRtal~n~l~Ar--~~~G~~iLRieDtD~~----------------R~~~e~~~~I~edL~wLGl~wd--~~--~~q 168 (553)
T 3aii_A 111 IGHARAAILNHEYAR--KYDGRLILRIEDTDPR----------------RVDPEAYDMIPADLEWLGVEWD--ET--VIQ 168 (553)
T ss_dssp HHHHHHHHHHHHHHH--HTTCEEEEEECCCCGG----------------GCCTTHHHHHHHHHHHHTCCCS--EE--EEG
T ss_pred HHHHHHHHHHHHHHH--HcCCEEEEEECcCCcc----------------cccHHHHHHHHHHHHHcCCCCC--CC--ccc
Confidence 999999999999998 6788888888888752 1135789999999999999666 43 344
Q ss_pred hhhHHHHHHHHHHHHHCCCEEEeCcceeecCC
Q psy7914 283 PKYYKWTQALFLDLYHAGLVYRKEATVNWDPI 314 (365)
Q Consensus 283 ~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~ 314 (365)
..|.....+++.+|.++|++|. +||..
T Consensus 169 Sdr~~~y~~~~~~Li~~G~AY~-----c~cs~ 195 (553)
T 3aii_A 169 SDRMETYYEYTEKLIERGGAYV-----CTCRP 195 (553)
T ss_dssp GGGHHHHHHHHHHHHHTTSEEE-----ECSCH
T ss_pred ccCHHHHHHHHHHHHHcCCcee-----CCCCH
Confidence 4578888999999999999996 55544
No 25
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.71 E-value=4.3e-18 Score=175.34 Aligned_cols=112 Identities=13% Similarity=0.186 Sum_probs=95.8
Q ss_pred eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCC--chH---HHHHHHc--CCCH----------
Q psy7914 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFG--LPA---ENAAHQH--GIDP---------- 250 (365)
Q Consensus 188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G--~~I---~~~A~~~--g~~~---------- 250 (365)
.+|....|||||+|||||+|+++++|+++|+++++|++|.+++++||+| .+| ...|.+. |.++
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~ 100 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCH 100 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSS
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhH
Confidence 5777778999999999999999999999999999999999999999999 777 4455555 8887
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHH-HHHHHHHHHHHCC-CEE
Q psy7914 251 REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYK-WTQALFLDLYHAG-LVY 303 (365)
Q Consensus 251 ~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~-~v~~~f~~L~~kG-~Iy 303 (365)
+++++.+.+.|+++|++|||.+| .+ ++++. |.. .+++++++|.++| .||
T Consensus 101 ~~~~~~~~~~~~~~l~~Lgi~~D--~~-~~se~-~~~g~~~~~i~~L~~~G~~iy 151 (523)
T 1irx_A 101 ESYAEHFMRKFEEEVEKLGIEVD--LL-YASEL-YKRGEYSEEIRLAFEKRDKIM 151 (523)
T ss_dssp SSHHHHHHHHHHHHHHTTTCCCE--EE-EHHHH-HHTTTTHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCce--EE-echhh-ccchHHHHHHHHHHHchHHHH
Confidence 88999999999999999999887 33 44433 666 7889999999999 444
No 26
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=99.53 E-value=4.4e-15 Score=160.73 Aligned_cols=77 Identities=29% Similarity=0.513 Sum_probs=70.2
Q ss_pred hhhhHHHHHhccCCCCCCCChh-HHHHHhcccccccceEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceE
Q psy7914 17 GRAGAMDLYEGLSDPILQDWKD-IVNLQKHWIGEPNGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQY 95 (365)
Q Consensus 17 ~~~ya~~Ll~~l~~~~l~~w~~-v~~mQ~nWIG~~~g~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f 95 (365)
-++||++|+++|+. +++||+ |++||+||||||+|+.|.|++.+. +..|.||||+|+||++++ |
T Consensus 215 i~~y~~~Ll~~l~~--~~~wp~~v~~~~~~wig~s~g~~v~f~~~~~----------~~~i~v~TTrP~Tl~g~t----~ 278 (880)
T 4arc_A 215 ITAYADELLNDLDK--LDHWPDTVKTMQRNWIGRSEGVEITFNVNDY----------DNTLTVYTTRPDTFMGCT----Y 278 (880)
T ss_dssp GGGGHHHHHHHGGG--CTTSCHHHHHHHHHHHCEEEEEEEEEEETTC----------SSEEEEEESCGGGGGGCC----E
T ss_pred echhHHHHHHHHhh--cccccHHHHHHHHhhhccccceEEEEEecCC----------CceEEEEeCCchhhcCCe----E
Confidence 47899999999998 889999 999999999999999999999642 356999999999999999 9
Q ss_pred EEecCccccccccc
Q psy7914 96 ITVKSSHILASKTK 109 (365)
Q Consensus 96 ~~l~~~h~l~~~~~ 109 (365)
++++|+|+++...+
T Consensus 279 vav~Pe~~~~~~~~ 292 (880)
T 4arc_A 279 LAVAAGHPLAQKAA 292 (880)
T ss_dssp EEECTTCHHHHHHG
T ss_pred EEECCCcHHHHHHh
Confidence 99999999987654
No 27
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=99.31 E-value=4.2e-12 Score=129.31 Aligned_cols=105 Identities=16% Similarity=0.166 Sum_probs=81.8
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ 266 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~ 266 (365)
.++++.++|+|||+|||||+|+++++|.+||. ..|..|+++..+|. ....+.+.+.|.++|+
T Consensus 12 ~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~~iLRieDtD~----------------~r~~~~~~~~I~~~l~ 73 (481)
T 2o5r_A 12 HMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGKFILRIEDTDL----------------ERSEREYEEKLMESLR 73 (481)
T ss_dssp -CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCSSC----------------CSGGGHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCeEEEEEecCCc----------------cccHHHHHHHHHHHHH
Confidence 48899999999999999999999999999995 79999999876663 2233567888999999
Q ss_pred hcCCCccCCCcc-------cccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCC
Q psy7914 267 GFGCKFNWESEL-------ATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDN 316 (365)
Q Consensus 267 ~lgI~~D~~~~~-------~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~ 316 (365)
+||+.+| ... ......+.+...++.++|.++|.+| .+||...+
T Consensus 74 wlGl~~d--e~p~~gg~~g~y~QS~r~~~y~~~a~~L~~~G~aY-----~c~ct~ee 123 (481)
T 2o5r_A 74 WLGLLWD--EGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAY-----YVYAYPEE 123 (481)
T ss_dssp HHTCCCS--BBTTTBCTTCCCBGGGGHHHHHHHHHHHHHTTSEE-----EECCCSTT
T ss_pred HcCCCCC--CCcccCCCCCceeeeccHHHHHHHHHHHHHCCCee-----EecCCHHH
Confidence 9999766 310 1123445677788999999999987 34665543
No 28
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=99.30 E-value=1.5e-12 Score=141.44 Aligned_cols=76 Identities=20% Similarity=0.369 Sum_probs=68.3
Q ss_pred chhhhHHHHHhccCCCCCCCChh-HHHHHhcccccccceEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccce
Q psy7914 16 SGRAGAMDLYEGLSDPILQDWKD-IVNLQKHWIGEPNGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQ 94 (365)
Q Consensus 16 ~~~~ya~~Ll~~l~~~~l~~w~~-v~~mQ~nWIG~~~g~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~ 94 (365)
..++||++|+++|++ +. ||+ |++||+||||+|.|+.|.|++.+. +..|.||||+|+||++++
T Consensus 195 ~l~~~~~~L~~~l~~--~~-~p~~~~~~~~~wi~~s~g~~v~f~~~~~----------~~~l~v~TTrP~Tl~g~~---- 257 (878)
T 2v0c_A 195 RITAYAERLLKDLEG--LN-WPEKVKAMQRAWIGRSEGAEILFPVEGK----------EVRIPVFTTRPDTLFGAT---- 257 (878)
T ss_dssp CGGGGHHHHHHTTTT--CB-SCHHHHHHHHHHHCEEEEEEEEEEBTTS----------SCEEEEEESCGGGGGGCC----
T ss_pred ecchhHHHHHHHhhh--cC-CCHHHHHHHHHHhccccCceEEEEecCC----------CceEEEEeCCchhhhCcE----
Confidence 357899999999997 65 999 999999999999999999998642 456999999999999999
Q ss_pred EEEecCcccccccc
Q psy7914 95 YITVKSSHILASKT 108 (365)
Q Consensus 95 f~~l~~~h~l~~~~ 108 (365)
+++++|+|+++...
T Consensus 258 ~vav~pe~~~~~~~ 271 (878)
T 2v0c_A 258 FLVLAPEHPLTLEL 271 (878)
T ss_dssp EEEECTTSHHHHHH
T ss_pred EEEEcCCCeeeehh
Confidence 99999999988654
No 29
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.27 E-value=9.7e-12 Score=129.45 Aligned_cols=94 Identities=17% Similarity=0.194 Sum_probs=77.0
Q ss_pred EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914 189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 268 (365)
Q Consensus 189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l 268 (365)
+++.++|+|||+|||||+|++++++.+|| ...|..++++-.+|. ..-...+.+.|.++|++|
T Consensus 130 v~~RFaPsPTG~LHiG~artAl~n~l~Ar--~~~G~~ilRieDtD~----------------~r~~~~~~~~I~~dL~wl 191 (592)
T 3al0_C 130 VRVRFAPSPTGHLHVGGARTALFNWMFAR--KEGGKFILRIEDTDT----------------ERSSREYEQQILESLRWC 191 (592)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHH--HHTCEEEECBCCCCS----------------SSCCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHHHHH--hcCCcEEEEecCcCh----------------hhccHHHHHHHHHHHHHc
Confidence 66777799999999999999999999999 579999999977773 122357889999999999
Q ss_pred CCCccCCCc---------ccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914 269 GCKFNWESE---------LATCDPKYYKWTQALFLDLYHAGLVYR 304 (365)
Q Consensus 269 gI~~D~~~~---------~~t~d~~~~~~v~~~f~~L~~kG~Iy~ 304 (365)
||.+| .. ++.+ .+.+...+++.+|.++|++|.
T Consensus 192 Gl~~D--~~~~~gG~~gp~~qS--er~~~y~~~~~~L~~~G~aY~ 232 (592)
T 3al0_C 192 GLDWD--EGPDIGGDFGPYRQS--ERLEIYREYAEKLVEDKRAYY 232 (592)
T ss_dssp TCCCS--BBTTTBCTTCCCBST--TCHHHHHHHHHHHHHTTTEEE
T ss_pred CCCCC--CCCCcCCCCCCeeee--CCHHHHHHHHHHHHHcCCceE
Confidence 99776 42 2333 345777899999999999995
No 30
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=99.25 E-value=1.5e-11 Score=126.25 Aligned_cols=96 Identities=18% Similarity=0.345 Sum_probs=79.5
Q ss_pred eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 267 (365)
Q Consensus 188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~ 267 (365)
-+++.++|.|||+|||||||++++...+|| .+.|.-|+++..+|+ .....++.+.|.++|++
T Consensus 26 ~v~tRFaPSPtG~LHIGhaRtal~n~l~Ar--~~gG~fiLRieDTD~----------------~R~~~e~~~~I~edL~w 87 (553)
T 1qtq_A 26 TVHTRFPPEPNGYLHIGHAKSICLNFGIAQ--DYKGQCNLRFDDTNP----------------VKEDIEYVESIKNDVEW 87 (553)
T ss_dssp SCEEEECCCTTSCCBHHHHHHHHHHHHHHH--HTTCEEEEEECCCCG----------------GGCCHHHHHHHHHHHHH
T ss_pred ceEEEeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECCCCc----------------hhcCHHHHHHHHHHHHH
Confidence 378999999999999999999999999999 778999999988886 12346889999999999
Q ss_pred cCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914 268 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 304 (365)
Q Consensus 268 lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~ 304 (365)
||+.+| .. .+....|.....+...+|.++|++|.
T Consensus 88 LGl~wd--e~-~~~qSer~~~~~~~a~~Li~~G~AY~ 121 (553)
T 1qtq_A 88 LGFHWS--GN-VRYSSDYFDQLHAYAIELINKGLAYV 121 (553)
T ss_dssp TTCCCS--SS-CEEGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCC--CC-CeehcccHHHHHHHHHHHHHCCCcee
Confidence 999775 22 23344566667788889999999996
No 31
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.24 E-value=1.3e-11 Score=118.51 Aligned_cols=95 Identities=25% Similarity=0.264 Sum_probs=77.3
Q ss_pred eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 267 (365)
Q Consensus 188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~ 267 (365)
-+++.++|+|||+|||||+|++++...+|| ...|.-++++..+|+- .-..++.+.|.++|++
T Consensus 5 ~v~~RFAPsPtG~LHiG~~rtal~n~l~Ar--~~~g~~ilRieDtD~~----------------R~~~~~~~~I~~dL~~ 66 (298)
T 1nzj_A 5 QYIGRFAPSPSGELHFGSLIAALGSYLQAR--ARQGRWLVRIEDIDPP----------------REVPGAAETILRQLEH 66 (298)
T ss_dssp CCEEEECCCTTSCCCHHHHHHHHHHHHHHH--HTTCEEEEEECCSCGG----------------GSCTTHHHHHHHHHHH
T ss_pred CeEEEECcCCCCCccHHHHHHHHHHHHHHH--hcCCeEEEEEecCCch----------------hhHHHHHHHHHHHHHH
Confidence 378899999999999999999999988888 5678888888877742 1125789999999999
Q ss_pred cCCCccCCC-cccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914 268 FGCKFNWES-ELATCDPKYYKWTQALFLDLYHAGLVYR 304 (365)
Q Consensus 268 lgI~~D~~~-~~~t~d~~~~~~v~~~f~~L~~kG~Iy~ 304 (365)
|||.+| . .++.+ ++.+...+++++|.++|++|.
T Consensus 67 LGl~~D--~~~~~qS--er~~~y~~~~~~L~~~G~aY~ 100 (298)
T 1nzj_A 67 YGLHWD--GDVLWQS--QRHDAYREALAWLHEQGLSYY 100 (298)
T ss_dssp TTCCCS--SCCEEGG--GCHHHHHHHHHHHHHTTCEEE
T ss_pred cCCCCC--CCCeeee--CCHHHHHHHHHHHHHcCCccc
Confidence 999777 3 23333 356778899999999999995
No 32
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=99.20 E-value=3.2e-11 Score=122.62 Aligned_cols=103 Identities=17% Similarity=0.268 Sum_probs=81.2
Q ss_pred eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 267 (365)
Q Consensus 188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~ 267 (365)
.+++.++|.|||+|||||+|++++.+.++| ...|..++++..+|. .....++.+.|.++|++
T Consensus 25 ~v~~RFAPSPTG~lHiG~~rtal~n~l~Ar--~~~G~filRieDtD~----------------~R~~~~~~~~i~~dl~w 86 (490)
T 4g6z_A 25 PVRTRFAPSPTGFIHLGNIRSALYPWAFAR--KMKGTFVLRIEDTDV----------------ERSSQEAVDAILEGMAW 86 (490)
T ss_dssp CCEEEECCCCCSCCBHHHHHHHHHHHHHHH--HTTCEEEEEECCCCG----------------GGCCHHHHHHHHHHHHH
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHH--hcCCeEEEEeCCCCc----------------ccccHHHHHHHHHHHHH
Confidence 477899999999999999999999999999 578999999988885 12236889999999999
Q ss_pred cCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCC
Q psy7914 268 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDN 316 (365)
Q Consensus 268 lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~ 316 (365)
|||.+| .. ......+.+...+++.+|.++|++| .|||...+
T Consensus 87 lGl~~d--~~-~~~qS~r~~~y~~~~~~Li~~G~aY-----~C~ct~ee 127 (490)
T 4g6z_A 87 LGLDYD--EG-PYYQMQRMDRYREVLAQMQEKGLVY-----PCYMSTEE 127 (490)
T ss_dssp TTCCCS--EE-EEEGGGCHHHHHHHHHHHHHTTSEE-----EECC----
T ss_pred cCCCCC--CC-CcccccCHHHHHHHHHHHHHCCCEE-----eCCCCHHH
Confidence 999766 32 1234456777889999999999998 34665544
No 33
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=99.18 E-value=4.3e-11 Score=127.95 Aligned_cols=96 Identities=20% Similarity=0.206 Sum_probs=81.1
Q ss_pred eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 267 (365)
Q Consensus 188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~ 267 (365)
.+++.++|.|||+|||||+|++++...+|| .+.|.-|+++..+|+. .-..++.+.|.++|++
T Consensus 66 ~v~tRFaPSPtG~LHIGhARtAL~n~l~Ar--~~gG~fiLRIEDTD~~----------------R~~~e~~~~IledL~w 127 (851)
T 2hz7_A 66 RVVTRFPPDPSGYAHLGHVFASLLDFNTAR--QYGGQFNLRMDDTNPE----------------LARQEYVDSIADDLKW 127 (851)
T ss_dssp SCEEEECCCSSSCCBHHHHHHHHHHHHHHH--HTTCEEEEEECCCCTT----------------TCCHHHHHHHHHHHHH
T ss_pred ceEEEeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECcCCcc----------------cccHHHHHHHHHHHHH
Confidence 378999999999999999999999999999 6789999999888862 1146889999999999
Q ss_pred cCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914 268 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 304 (365)
Q Consensus 268 lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~ 304 (365)
||+.+| .. .+....|.....+++.+|.++|++|.
T Consensus 128 LGl~wd--e~-~~~qSer~d~y~e~a~~LI~~G~AY~ 161 (851)
T 2hz7_A 128 LGLDWG--EH-FYYASDYFDRYYAYAEQLIRQGDAYV 161 (851)
T ss_dssp HTCCCT--TC-EEEGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCC--CC-cccHhhhHHHHHHHHHHHHHCCCcEe
Confidence 999765 22 23445678888999999999999996
No 34
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.13 E-value=8.8e-11 Score=119.82 Aligned_cols=100 Identities=19% Similarity=0.229 Sum_probs=80.7
Q ss_pred EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914 189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 268 (365)
Q Consensus 189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l 268 (365)
+++.++|.|||+|||||+|++++...+|| ...|.-|+++..+|..-. ..++.+.|.++|++|
T Consensus 2 v~~RFAPSPtG~lHiG~artal~n~l~Ar--~~~G~filRieDtD~~R~----------------~~~~~~~i~~dL~wL 63 (492)
T 2cfo_A 2 VRVRLAPSPTGNLHIGTARTAVFNWLYAR--HRGGKFILRIEDTDRERS----------------RPEYTENILEGLQWL 63 (492)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHH--HTTCEEEEEECCCSSSSC----------------CHHHHHHHHHHHHHT
T ss_pred ceEEeCCCCCCCccHHHHHHHHHHHHHHH--hcCCeEEEEEeeCCcccc----------------chHHHHHHHHHHHHc
Confidence 56899999999999999999999999998 678999999998885111 257889999999999
Q ss_pred CCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCC
Q psy7914 269 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPI 314 (365)
Q Consensus 269 gI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~ 314 (365)
||.+| .. ......+.+...+++++|.++|++|. |||..
T Consensus 64 Gl~wd--e~-~~~QS~r~~~y~~~~~~Li~~G~AY~-----c~ct~ 101 (492)
T 2cfo_A 64 GLTWD--EG-PYFQSDRLDLYRQAIQTLLDKGLAYY-----CYCTP 101 (492)
T ss_dssp TCCCS--EE-EEEGGGCHHHHHHHHHHHHHTTSEEE-----ECCCH
T ss_pred CCCCC--CC-CccccCCHHHHHHHHHHHHHCCCceE-----ecCCH
Confidence 99666 41 12334466777899999999999996 56654
No 35
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.13 E-value=1.4e-10 Score=118.11 Aligned_cols=101 Identities=16% Similarity=0.150 Sum_probs=82.2
Q ss_pred EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914 189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 268 (365)
Q Consensus 189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l 268 (365)
+++.++|.|||+|||||+|++++...+|| ...|.-++++-.+|.. .-..++.+.|.++|++|
T Consensus 26 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar--~~~G~filRieDtD~~----------------R~~~~~~~~I~~dL~wl 87 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTALFNWMFAR--KEGGKFILRIEDTDTE----------------RSSREYEQQILESLRWC 87 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHH--HHTCEEEECBCCCCTT----------------TCCHHHHHHHHHHHHHT
T ss_pred ceEEECCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEEeeCCcc----------------cccHHHHHHHHHHHHHc
Confidence 78999999999999999999999999999 7899999999888852 22357889999999999
Q ss_pred CCCccCCCc---------ccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCC
Q psy7914 269 GCKFNWESE---------LATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDN 316 (365)
Q Consensus 269 gI~~D~~~~---------~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~ 316 (365)
||.+| .. ++. +.+.+...+++++|.++|++|. +||...+
T Consensus 88 Gl~wD--e~~~~gG~~gp~~Q--Ser~~~y~~~~~~L~~~G~aY~-----c~ct~ee 135 (488)
T 3afh_A 88 GLDWD--EGPDIGGDFGPYRQ--SERLEIYREYAEKLVEDKRAYY-----VVYDKED 135 (488)
T ss_dssp TCCCS--BBTTTBCTTCCCBG--GGCHHHHHHHHHHHHHTTSEEE-----EEECSSS
T ss_pred CCCCC--cCCCCCCCCCCeee--eCCHHHHHHHHHHHHHcCCeEe-----cCCCHHH
Confidence 99776 42 233 3455677899999999999995 3555443
No 36
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=99.11 E-value=1.3e-10 Score=119.40 Aligned_cols=99 Identities=18% Similarity=0.208 Sum_probs=77.8
Q ss_pred eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 267 (365)
Q Consensus 188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~ 267 (365)
.+.+.++|.|||+|||||+|++++...+|| +..|.-++++-.||. .....++.+.|.++|+|
T Consensus 24 ~vrtRFAPsPtG~LHiG~artAl~n~~~Ar--~~~G~fiLRieDtD~----------------~R~~~~~~~~I~~~L~w 85 (512)
T 4gri_A 24 STRVRYAPSPTGLQHIGGIRTALFNYFFAK--SCGGKFLLRIEDTDQ----------------SRYSPEAENDLYSSLKW 85 (512)
T ss_dssp CCEEEECCCSSSCCBHHHHHHHHHHHHHHH--HTTCEEEECBCCCCT----------------TSCCHHHHHHHHHHHHH
T ss_pred ceeEEeCcCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCCC----------------CcCCHHHHHHHHHHHHH
Confidence 477899999999999999999999999999 789999999988874 22235788999999999
Q ss_pred cCCCccCCCc----cc-ccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914 268 FGCKFNWESE----LA-TCDPKYYKWTQALFLDLYHAGLVYR 304 (365)
Q Consensus 268 lgI~~D~~~~----~~-t~d~~~~~~v~~~f~~L~~kG~Iy~ 304 (365)
||+.+|-... +. .....+.+.-.+++++|.++|++|.
T Consensus 86 lGl~wDe~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~ 127 (512)
T 4gri_A 86 LGISFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYY 127 (512)
T ss_dssp HTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCCcCCccCCCCCCccccchHHHHHHHHHHHHHcCCccc
Confidence 9997761110 00 1223345566789999999999984
No 37
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.04 E-value=2.6e-10 Score=115.75 Aligned_cols=96 Identities=19% Similarity=0.270 Sum_probs=77.9
Q ss_pred EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914 189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 268 (365)
Q Consensus 189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l 268 (365)
+++.++|.|||+|||||+|++++...+|| ...|.-++++-.+|.. .-..++.+.|.++|++|
T Consensus 2 v~~RFaPsPtG~LHiG~~rtal~n~l~Ar--~~~G~filRieDtD~~----------------R~~~~~~~~I~~dl~wl 63 (468)
T 1j09_A 2 VVTRIAPSPTGDPHVGTAYIALFNYAWAR--RNGGRFIVRIEDTDRA----------------RYVPGAEERILAALKWL 63 (468)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHH--HTTCEEEECBCCCCTT----------------SCCTTHHHHHHHHHHHT
T ss_pred ceEEeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCCCc----------------ccChHHHHHHHHHHHHc
Confidence 56899999999999999999999999999 7789999999888852 11347789999999999
Q ss_pred CCCccCCCcc-------cccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914 269 GCKFNWESEL-------ATCDPKYYKWTQALFLDLYHAGLVYR 304 (365)
Q Consensus 269 gI~~D~~~~~-------~t~d~~~~~~v~~~f~~L~~kG~Iy~ 304 (365)
|+.+| ... ....+.+.+...+++.+|.++|++|.
T Consensus 64 Gl~wd--~~~~~gG~~gp~~QS~r~~~y~~~~~~L~~~G~aY~ 104 (468)
T 1j09_A 64 GLSYD--EGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYR 104 (468)
T ss_dssp TCCCS--BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCCC--CCCCCCCCCCCeeccCCHHHHHHHHHHHHHcCCeEE
Confidence 99766 431 12334456677899999999999984
No 38
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.01 E-value=7.1e-10 Score=113.16 Aligned_cols=94 Identities=21% Similarity=0.291 Sum_probs=78.5
Q ss_pred EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914 189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 268 (365)
Q Consensus 189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l 268 (365)
+++.++|.|||+|||||+|++++.-.+|| ...|.-++++-.+|. .....++.+.|.++|+||
T Consensus 7 vr~RFAPsPTG~LHiG~~rtAL~n~l~Ar--~~gG~fiLRieDtD~----------------~R~~~~~~~~I~~~L~wl 68 (498)
T 2ja2_A 7 VRVRFCPSPTGTPHVGLVRTALFNWAYAR--HTGGTFVFRIEDTDA----------------QRDSEESYLALLDALRWL 68 (498)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHH--HHTCEEEECBCCCCT----------------TTCCHHHHHHHHHHHHHH
T ss_pred eeEEECcCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECcCCC----------------cccChHHHHHHHHHHHHc
Confidence 78899999999999999999999999999 789999999988874 222357889999999999
Q ss_pred CCCccCCC---------cccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914 269 GCKFNWES---------ELATCDPKYYKWTQALFLDLYHAGLVYR 304 (365)
Q Consensus 269 gI~~D~~~---------~~~t~d~~~~~~v~~~f~~L~~kG~Iy~ 304 (365)
|+.+| . .++. +.+.+...+++.+|.++|++|.
T Consensus 69 Gl~wD--egp~~gG~~~~~~Q--S~r~~~y~~~~~~L~~~g~aY~ 109 (498)
T 2ja2_A 69 GLDWD--EGPEVGGPYGPYRQ--SQRAEIYRDVLARLLAAGEAYH 109 (498)
T ss_dssp TCCCS--BBTTTBCTTCCCBG--GGCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCcC--CCcCcCCCCCCeee--ecCHHHHHHHHHHHHHcCCeEE
Confidence 99766 4 2333 3456667899999999999983
No 39
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A
Probab=98.11 E-value=1.6e-06 Score=79.43 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=40.3
Q ss_pred ccccceEEEEEeCCCCCCC----C-------CCCCCCCcEEEECCCCchhhhccccceEEEecCcccccccccc
Q psy7914 48 GEPNGVRFEFQILPQPEGT----S-------NSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHILASKTKE 110 (365)
Q Consensus 48 G~~~g~~~~f~~~~~~~~~----~-------~~~~~~~~~~v~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~~a 110 (365)
|||+|++|.|++.+....- . ........|.||||+|.||++.+ |++++|+|+++.....
T Consensus 1 gkS~G~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vwTTtPwTL~gn~----~iav~pe~~yv~~~~~ 70 (219)
T 3o0a_A 1 GRSEGALIRFYVEIEEPEKFLNCVPEELKETLLKEKRIYIDVFTTRPDTVFGAT----FVVLAPEHPLVPVLAC 70 (219)
T ss_dssp ---CCEEEEEEEECSCGGGTGGGSCHHHHHHHHHHSEEEEEEEESCGGGGGGCC----EEEECTTCTHHHHHHH
T ss_pred CceeEEEEEEEecCCccccccccccchhhhhcccCCCCEEEEEECCcchhhccc----EEEECCCCcEEEEEec
Confidence 8999999999996421000 0 00000146999999999999999 9999999999877543
No 40
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=97.55 E-value=8.6e-05 Score=79.96 Aligned_cols=44 Identities=7% Similarity=-0.040 Sum_probs=34.6
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceEEEecCcccccccc
Q psy7914 53 VRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHILASKT 108 (365)
Q Consensus 53 ~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~ 108 (365)
+.|.|++.+.. .+..|.||||+|+||++.+ ++++.|+|+.+...
T Consensus 210 ~~v~f~~~~~~--------~~~~l~v~TTrP~Tl~g~~----av~v~P~~~y~~~~ 253 (810)
T 1wkb_A 210 IIIKFELRENG--------EVIYLPAATLRPETVYGVT----NMWVNPNATYVKAK 253 (810)
T ss_dssp EEEEEECCSSC--------SCCEEEEEESCGGGGGGCC----EEEECTTSCEEEEE
T ss_pred EEEEEEccCCC--------CceEEEEEcCCchHhhhhh----EEEECCCCcEEEEE
Confidence 56778774320 0245999999999999999 99999999987654
No 41
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A
Probab=97.30 E-value=0.0002 Score=64.33 Aligned_cols=45 Identities=24% Similarity=0.378 Sum_probs=38.5
Q ss_pred ccceEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceEEEecCcccccccc
Q psy7914 50 PNGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHILASKT 108 (365)
Q Consensus 50 ~~g~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~ 108 (365)
-.|+.|.|++.+. +..|.||||+|+||++.+ +++++|+|+++...
T Consensus 10 ~~g~~v~F~~~~~----------~~~l~i~TTrP~TL~g~~----avav~P~~~yv~~~ 54 (196)
T 2ajg_A 10 GEGVEITFNVNDY----------DNTLTVYTTRPDTFMGCT----YLAVAAGHPLAQKA 54 (196)
T ss_dssp -CEEEEEEEBTTC----------SSEEEEEESCGGGGGGCC----EEEECTTSHHHHHH
T ss_pred CceEEEEEEeCCC----------CcEEEEEECChhhhcCcc----EEEECCCCcEEEEE
Confidence 3699999998542 456999999999999999 99999999987764
No 42
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A
Probab=97.07 E-value=0.0004 Score=61.74 Aligned_cols=53 Identities=13% Similarity=0.065 Sum_probs=40.8
Q ss_pred cccceEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceEEEecCccccccccc
Q psy7914 49 EPNGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHILASKTK 109 (365)
Q Consensus 49 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~~ 109 (365)
+|.|+.|.|++.+... ....+..|.||||+|+||++.. +++++|+|+++...+
T Consensus 2 ~S~~i~V~F~~~~~~~----~~~~~~~l~i~TTrP~Tl~g~~----aiav~p~~~y~~~~~ 54 (186)
T 1wny_A 2 QDPSVYVRFPLKEPKK----LGLEKASLLIWTTTPWTLPGNV----AAAVHPEYTYAAFQV 54 (186)
T ss_dssp -CCEEEEEEEBSCGGG----GTCSSEEEEEEESCGGGGGGCC----EEEECTTSEEEEEEE
T ss_pred ccceEEEEEEeCCCcc----ccCCCcEEEEEECCcchhhcce----EEEECCCCcEEEEEe
Confidence 5899999999864200 0001245999999999999999 999999999988764
No 43
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Probab=95.88 E-value=0.0083 Score=51.21 Aligned_cols=36 Identities=8% Similarity=0.065 Sum_probs=30.9
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceEEEecCccc
Q psy7914 53 VRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHI 103 (365)
Q Consensus 53 ~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f~~l~~~h~ 103 (365)
+.|.|++ +. +..|.||||+|+||++.. +++++|+|+
T Consensus 7 ~~v~F~~-~~----------~~~l~i~TTrP~Tl~g~~----aiav~P~~~ 42 (147)
T 1wka_A 7 YTLRYEV-EG----------GGFIEIATVRPETVFADQ----AIAVHPEDE 42 (147)
T ss_dssp EEEEEEB-TT----------SCEEEEEESCGGGGGGCC----EEEECTTCT
T ss_pred EEEEEEC-CC----------CcEEEEEECCceecccce----EEEECCCCc
Confidence 5788888 32 346999999999999999 999999985
No 44
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=95.86 E-value=0.0017 Score=52.76 Aligned_cols=43 Identities=2% Similarity=-0.140 Sum_probs=35.7
Q ss_pred ECCCCchhhhccccceEEEecCccccccccccccCcceeEEEccchhh
Q psy7914 79 WLPEDTIEDVAKSQGQYITVKSSHILASKTKEKLTENVKHQIENKYKS 126 (365)
Q Consensus 79 ~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~~a~~~gf~n~~i~n~~~~ 126 (365)
+-++|+.|+... ...+..+..+.+.+++| ||||||++...++.
T Consensus 54 ~~~~P~~iA~~i----~~~l~~~~~i~~vevag-pGFINf~l~~~~~~ 96 (109)
T 3gdz_A 54 LGMAPRQLAEQV----LSHLDLNGIANKVEIAG-PGFINIFLDPAFLA 96 (109)
T ss_dssp TTSCHHHHHHHH----HHHCCCTTTEEEEEEET-TTEEEEEECHHHHH
T ss_pred hCCCHHHHHHHH----HHhcCcCCcEeEEEEeC-CCeEEEEECHHHHH
Confidence 346899999887 55566666688899999 99999999999988
No 45
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=95.51 E-value=0.028 Score=55.47 Aligned_cols=74 Identities=19% Similarity=0.153 Sum_probs=41.4
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccC-----CCCCCchHHHHHHHcCCCHHHHHHHHHHHH
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMG-----WDAFGLPAENAAHQHGIDPREWTVGNIATM 261 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g-----~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i 261 (365)
++.|..+ --|||.|||||.++++.. .++++ .|+++.+..+ +++...+.+. .+..+..+...+
T Consensus 39 p~~vy~G-~~PTG~LHlG~~~~al~~---~~~~q-~g~~~ii~I~D~ha~t~~~~~~~e~--------~~~~~~~~~~~i 105 (394)
T 2dlc_X 39 HLKLYWG-TAPTGRPHCGYFVPMTKL---ADFLK-AGCEVTVLLADLHAFLDNMKAPLEV--------VNYRAKYYELTI 105 (394)
T ss_dssp CCEEEEE-ECCCSCCBGGGHHHHHHH---HHHHH-TTCEEEEEECHHHHHHTTTSSCTTH--------HHHHHHHHHHHH
T ss_pred CeEEEEE-eCCCCCccHHHHHHHHHH---HHHHH-cCCcEEEEEcCCccccCCCCCcHHH--------HHHHHHHHHHHH
Confidence 4444433 123899999999887653 33344 6777655543 3321111110 122234455667
Q ss_pred HHHHHhcCCCcc
Q psy7914 262 KSQLQGFGCKFN 273 (365)
Q Consensus 262 ~~~l~~lgI~~D 273 (365)
...|.++|+..|
T Consensus 106 ~~~l~a~Gldp~ 117 (394)
T 2dlc_X 106 KAILRSINVPIE 117 (394)
T ss_dssp HHHHHHTTCCCT
T ss_pred HHHHHHcCCChh
Confidence 778899999665
No 46
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=94.59 E-value=0.089 Score=51.48 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=40.3
Q ss_pred EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccC-----CCCCCchHHHHHHHcCCCHHHH---HHHHHHH
Q psy7914 189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMG-----WDAFGLPAENAAHQHGIDPREW---TVGNIAT 260 (365)
Q Consensus 189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g-----~Dd~G~~I~~~A~~~g~~~~e~---~~~~~~~ 260 (365)
.|..+.- |||.|||||..+++. +.++++ .|+++.+..+ +++- .++.++ +..+.+.
T Consensus 37 ~vy~G~~-PTG~lHlG~~~~~l~---~~~~~q-~g~~~i~~I~D~ha~t~~~------------~~~~~l~~~~~~~~~~ 99 (372)
T 1n3l_A 37 KIYWGTA-TTGKPHVAYFVPMSK---IADFLK-AGCEVTILFADLHAYLDNM------------KAPWELLELRVSYYEN 99 (372)
T ss_dssp EEEEEEC-CSSCCBGGGHHHHHH---HHHHHH-TTCEEEEEECHHHHHHTTT------------TSCHHHHHHHHHHHHH
T ss_pred EEEeCcC-CCCcccHHHHHHHHH---HHHHHH-CCCCEEEEEcCCceeeCCC------------CCHHHHHHHHHHHHHH
Confidence 4444432 789999999988766 444444 6887665544 3221 122332 3344444
Q ss_pred -HHHHHHhcCCCcc
Q psy7914 261 -MKSQLQGFGCKFN 273 (365)
Q Consensus 261 -i~~~l~~lgI~~D 273 (365)
+...|.++|+..+
T Consensus 100 ~i~~~lla~Gldp~ 113 (372)
T 1n3l_A 100 VIKAMLESIGVPLE 113 (372)
T ss_dssp HHHHHHHHHTCCCT
T ss_pred HHHHHHHHcCCChh
Confidence 6666788999765
No 47
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=94.59 E-value=0.03 Score=53.80 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=41.4
Q ss_pred CCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914 196 YPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN 273 (365)
Q Consensus 196 npnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D 273 (365)
-|||.|||||..+++.. +.++.+ |+++.+..+ |.|+.- ...++.++ .++...+..++.++|+..+
T Consensus 11 ~PTg~lHlG~~lg~l~~--~~~lQ~--g~~~~~~ia-D~ha~~-------~~~~~~~l-~~~~~~~~~~~lA~Gldp~ 75 (322)
T 3tzl_A 11 QPSGDLHIGNYFGAIKQ--MVDAQE--KSQMFMFIA-NYHAMT-------SSQDGEKL-KQNSLKAAAAFLSLGIDPQ 75 (322)
T ss_dssp CCSSCCBHHHHHHTHHH--HHHTTT--TSCCEEEEC-HHHHTT-------TCCCHHHH-HHHHHHHHHHHHHTTCCTT
T ss_pred CCCccccHHHHHHHHHH--HHHHhc--CCCEEEEEe-cCeeec-------CCCCHHHH-HHHHHHHHHHHHHcCCCcc
Confidence 47899999999886544 445443 998877655 444331 11244443 4455567778888998765
No 48
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=94.45 E-value=0.17 Score=48.40 Aligned_cols=73 Identities=15% Similarity=0.117 Sum_probs=42.2
Q ss_pred eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 267 (365)
Q Consensus 188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~ 267 (365)
..|..+. -|||+|||||+ +++. .+.++ ...|+++.+..+=. |+. . ....++++ +..+...+.++|.+
T Consensus 33 ~~vy~G~-~PTg~lHlG~l-~~l~--~~~~l-q~~g~~~~~~i~D~-~a~----~--~d~~~~~~-i~~~~~~~~~~~~a 99 (323)
T 2cyb_A 33 PRAYVGY-EPSGEIHLGHM-MTVQ--KLMDL-QEAGFEIIVLLADI-HAY----L--NEKGTFEE-IAEVADYNKKVFIA 99 (323)
T ss_dssp CEEEEEE-CCCSCCBHHHH-HHHH--HHHHH-HHTTCEEEEEECHH-HHH----H--TTCCCHHH-HHHHHHHHHHHHHH
T ss_pred CEEEECc-CCCCcchHHHH-HHHH--HHHHH-HHCCCcEEEEECCc-eeE----c--CCCCCHHH-HHHHHHHHHHHHHH
Confidence 3444442 47899999996 4433 33333 34588876654321 111 0 00114443 46677888889999
Q ss_pred cCCCcc
Q psy7914 268 FGCKFN 273 (365)
Q Consensus 268 lgI~~D 273 (365)
+|+..|
T Consensus 100 ~Gldp~ 105 (323)
T 2cyb_A 100 LGLDES 105 (323)
T ss_dssp TTCCTT
T ss_pred hCCCcc
Confidence 999665
No 49
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Probab=93.66 E-value=0.035 Score=51.53 Aligned_cols=32 Identities=6% Similarity=-0.288 Sum_probs=28.8
Q ss_pred CcEEEECCCCchhhhccccceEEEecCccccccccc
Q psy7914 74 DTLSIWLPEDTIEDVAKSQGQYITVKSSHILASKTK 109 (365)
Q Consensus 74 ~~~~v~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~~ 109 (365)
..|.||||+|+||++.+ +++++|+|+++....
T Consensus 30 ~~l~v~TTrP~TL~g~t----alav~Pe~~yv~~~~ 61 (252)
T 2wfd_A 30 IFLVAATLRPETMFGQT----NCWVRPDMKYIGFET 61 (252)
T ss_dssp EEEEEEESCGGGGGGCC----EEEECSSSCCEEEEC
T ss_pred CEEEEEECChHHHhhhh----eEEECCCCcEEEEEe
Confidence 35999999999999999 999999999987654
No 50
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A*
Probab=93.35 E-value=0.04 Score=51.38 Aligned_cols=32 Identities=6% Similarity=-0.298 Sum_probs=29.0
Q ss_pred CcEEEECCCCchhhhccccceEEEecCccccccccc
Q psy7914 74 DTLSIWLPEDTIEDVAKSQGQYITVKSSHILASKTK 109 (365)
Q Consensus 74 ~~~~v~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~~ 109 (365)
..|.||||+|+||++.+ +++++|+|+++...+
T Consensus 33 ~~l~v~TTrP~TL~g~t----alav~Pe~~yv~v~~ 64 (261)
T 2wfg_A 33 VYLVAATLRPETMYGQT----CCFVSPKIDYGVFDA 64 (261)
T ss_dssp EEEEEEESCGGGGGGCC----EEEECTTCEEEEEEC
T ss_pred CEEEEEECCchHHhhhh----eEEECCCCceEEEEe
Confidence 35999999999999999 999999999987654
No 51
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=93.17 E-value=0.096 Score=50.38 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=40.3
Q ss_pred CCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914 196 YPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN 273 (365)
Q Consensus 196 npnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D 273 (365)
-|||.|||||..+++.. +.++ ..|+++.+..+ |.|+.-. ..+++++ .++...+.++|.++|+..+
T Consensus 9 ~PTG~lHlGn~vg~l~~--~~~l--Q~g~~~~~~Ia-D~ha~~~-------~~~~e~i-~~~~~~~~~~~la~Gldp~ 73 (328)
T 1i6k_A 9 QPSGVITIGNYIGALRQ--FVEL--QHEYNCYFCIV-DQHAITV-------WQDPHEL-RQNIRRLAALYLAVGIDPT 73 (328)
T ss_dssp CCCSCCBHHHHHHTHHH--HHHH--TTTSEEEEEEC-HHHHTTS-------CCCHHHH-HHHHHHHHHHHHHTTCCTT
T ss_pred CCCCcccHHHHHHHHHH--HHHH--HcCCcEEEEEe-CceeecC-------CCCHHHH-HHHHHHHHHHHHHhCCChh
Confidence 36799999999887632 2232 33888866544 3222210 1344433 4555678889999999765
No 52
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=92.69 E-value=0.15 Score=49.12 Aligned_cols=68 Identities=16% Similarity=0.105 Sum_probs=39.1
Q ss_pred CCCCCCchHHHHHHHHhhHHHHHHHHCC-CcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914 196 YPSGSLHMGHVRVYTISDTLARYYAMNG-KNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN 273 (365)
Q Consensus 196 npnG~LHiGHar~~v~~DvlaR~lr~~G-~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D 273 (365)
-|||+|||||..+++. -+.++.+ .| ++|.+..+ |.|+.-.. .+.++.+ ..++...+..++.++|+..+
T Consensus 9 ~PTg~lHlGh~~g~l~--~~~~lQ~-~G~~~~~~~Ia-D~~a~~~~-----~~~~~~~-i~~~~~~~~~~~la~Gldp~ 77 (337)
T 2el7_A 9 QPSGEIHIGNYLGAIK--QWVAIGE-KLGRDAFFCIV-DYHALTNP-----LAYDPST-LAQRTFEAALVNIAAGLDPE 77 (337)
T ss_dssp CSCSCCBHHHHHTHHH--HHHHHHH-HHGGGEEEEEC-GGGGGGST-----TTSCHHH-HHHHHHHHHHHHHHHTCCTT
T ss_pred CCCCcccHHHHHHHHH--HHHHHHh-cCCCCEEEEEe-CceeecCC-----CCCCHHH-HHHHHHHHHHHHHHhCCChh
Confidence 3679999999987752 2334433 46 88765544 22333110 0133433 34555566778888998665
No 53
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=92.59 E-value=0.16 Score=49.11 Aligned_cols=67 Identities=19% Similarity=0.194 Sum_probs=40.0
Q ss_pred CCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914 196 YPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN 273 (365)
Q Consensus 196 npnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D 273 (365)
-|||.|||||..+++. -+. .+...|++|.+.. .|.|+.- ....+|.+. .+......+++.++|+..+
T Consensus 20 ~PTG~lHLGn~~g~l~--~~~-~lQ~~G~~~~~~I-aD~ha~t------~~~~dp~~~-~~~~~~~~~~~lA~Gldp~ 86 (340)
T 2g36_A 20 RPTGKLHIGHLVGALE--NWV-KLQEEGNECFYFV-ADWHALT------THYDDVSKL-KEYTRDLVRGFLACGIDPE 86 (340)
T ss_dssp CCCSSCBHHHHHTHHH--HHH-HHHHTTCEEEEEE-CHHHHHH------HHTTCCTTH-HHHHHHHHHHHHHTTCCTT
T ss_pred CCCCcccHHhHHHHHH--HHH-HHHHCCCCEEEEE-ecceeec------CCCCCHHHH-HHHHHHHHHHHHHhCCChh
Confidence 3678999999988653 233 3345689988775 2322221 012344443 3444555667888999665
No 54
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=92.02 E-value=0.51 Score=46.08 Aligned_cols=75 Identities=25% Similarity=0.328 Sum_probs=45.4
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ 266 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~ 266 (365)
++.|.++. -|||+|||||..++. -.+++...|++|.+... |.|.. .-......+...........++-
T Consensus 70 ~~~v~sG~-~PTG~lHLGhyv~~~----~~~~lq~~~~~~~~~Ia-D~ha~------t~~~~~~~e~~r~~~~~~~~~~l 137 (372)
T 3a04_A 70 RVAVLTGF-MPSGKFHFGHKLTVD----QLIYLQKNGFKVFVAIA-DAEAF------AVRRIGREEAVRIAVEEYIANMI 137 (372)
T ss_dssp CCEEEEEE-CCCSCCBHHHHHHHH----HHHHHHHTTCEEEEEEC-HHHHH------HTTCCCHHHHHHHHHHTTHHHHH
T ss_pred CCEEEeCc-CCCcHhHHHHHHHHH----HHHHHHhCCCeEEEEEe-cchhh------ccCCCCCHHHHHHHHHHHHHHHH
Confidence 56777662 468999999987543 24455557999876543 33221 11122333434455556667778
Q ss_pred hcCCCcc
Q psy7914 267 GFGCKFN 273 (365)
Q Consensus 267 ~lgI~~D 273 (365)
++|+..+
T Consensus 138 A~GlDP~ 144 (372)
T 3a04_A 138 ALGLDPK 144 (372)
T ss_dssp HHTCCTT
T ss_pred HcCCChH
Confidence 8898766
No 55
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=91.75 E-value=0.27 Score=48.44 Aligned_cols=75 Identities=15% Similarity=0.243 Sum_probs=45.1
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHH-CCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAM-NGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQL 265 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~-~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l 265 (365)
++.|..+. -|||.|||||..+++. .|++.. .|++|.+..+ |.|+.- .....++.+. .++...+.+++
T Consensus 73 p~~i~sG~-~PTG~lHLGh~v~~~~----~~~lQ~~~g~~~~i~Ia-D~ha~~-----~~~~~~~e~i-~~~~~~~~~~~ 140 (392)
T 3jxe_A 73 GFFLYTGR-GPSGPMHIGHIIPFFA----TKWLQEKFGVNLYIQIT-DDEKFL-----FKENLTFDDT-KRWAYDNILDI 140 (392)
T ss_dssp CCEEEEEE-CCSSCCBHHHHHHHHH----HHHHHHHHCCEEEEEEC-HHHHHH-----HCSSCCHHHH-HHHHHHHHHHH
T ss_pred CeEEEecc-CCCCchhHHHHHHHHH----HHHHHHhcCCceEEEec-chHHhh-----cCCCCCHHHH-HHHHHHHHHHH
Confidence 45555552 2569999999887752 233433 6888887766 433210 0113555544 44455677788
Q ss_pred HhcCCCcc
Q psy7914 266 QGFGCKFN 273 (365)
Q Consensus 266 ~~lgI~~D 273 (365)
.++|+..+
T Consensus 141 lA~GlDp~ 148 (392)
T 3jxe_A 141 IAVGFDPD 148 (392)
T ss_dssp HTTCCCTT
T ss_pred HHhCcCcc
Confidence 88999765
No 56
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=91.58 E-value=0.34 Score=46.16 Aligned_cols=71 Identities=14% Similarity=0.028 Sum_probs=40.8
Q ss_pred eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 267 (365)
Q Consensus 188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~ 267 (365)
+.|..+ --|||+||||| .+.+. .+.++ ...|+++.+..+=+ |+.- . ...+++ -+.++...+.+++.+
T Consensus 29 ~~vy~G-~~PTg~lHlGh-l~~l~--~~~~l-Q~~g~~~~~~i~D~-~a~~----~--~~~~~e-~i~~~~~~~~~~~~a 95 (314)
T 2zp1_A 29 KSAYIG-FEPSGKIHLGH-YLQIK--KMIDL-QNAGFDIIILLADL-AAYL----N--QKGELD-EIRKIGDYNKKVFEA 95 (314)
T ss_dssp EEEEEE-ECCCSSCBHHH-HHHHH--HHHHH-HHTTEEEEEEECHH-HHHH----T--TCCCHH-HHHHHHHHHHHHHHH
T ss_pred CEEEEc-cCCCCCcchhh-HHHHH--HHHHH-HHCCCCEEEEEecc-eEec----C--CCCCHH-HHHHHHHHHHHHHHh
Confidence 444433 22479999999 66543 23333 34588877765422 1110 0 011333 345566889999999
Q ss_pred cCCC
Q psy7914 268 FGCK 271 (365)
Q Consensus 268 lgI~ 271 (365)
+|+.
T Consensus 96 ~G~d 99 (314)
T 2zp1_A 96 MGLK 99 (314)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 9985
No 57
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=91.34 E-value=0.2 Score=48.82 Aligned_cols=75 Identities=13% Similarity=0.078 Sum_probs=42.7
Q ss_pred eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 267 (365)
Q Consensus 188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~ 267 (365)
..+..+ --|||+||||| .+.+. .+.++ ...|+++.+..+ |.|+.- ....|.+++++ ..+...+.+++.+
T Consensus 36 ~~iy~G-~~PTg~lHlG~-l~~l~--~~~~l-Q~~G~~~~~~ia-D~~a~~----~~ps~~~~e~i-~~~~~~~~~~~la 104 (364)
T 2cya_A 36 IKGYIG-YEPSGVAHIGW-LVWMY--KVKDL-VEAGVDFSVLEA-TWHAYI----NDKLGGDMDLI-RAAARIVRRVMEA 104 (364)
T ss_dssp CEEEEE-ECCCSSCBTHH-HHHHH--HHHHH-HHTTCEEEEEEC-HHHHHH----TTGGGGCHHHH-HHHHHHHHHHHHH
T ss_pred CEEEec-cCCCCCccHhH-HHHHH--HHHHH-HHCCCCEEEEEe-Ccchhh----CCCCCCCHHHH-HHHHHHHHHHHHH
Confidence 344433 24579999999 65543 23333 345888877755 222221 01112344444 3445677889999
Q ss_pred cCCCcc
Q psy7914 268 FGCKFN 273 (365)
Q Consensus 268 lgI~~D 273 (365)
+|+..+
T Consensus 105 ~G~dp~ 110 (364)
T 2cya_A 105 AGVPVE 110 (364)
T ss_dssp TTCCGG
T ss_pred hCCCcc
Confidence 999765
No 58
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=90.52 E-value=0.27 Score=47.50 Aligned_cols=65 Identities=14% Similarity=0.075 Sum_probs=40.8
Q ss_pred CCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914 196 YPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN 273 (365)
Q Consensus 196 npnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D 273 (365)
-|||+|||||..+++- -+.++.. ++++.+..+ |.|..- ...++.++ .++...+..++.++|+..+
T Consensus 14 ~PTG~lHLGhy~g~l~--~~~~lQ~--~~~~~~~ia-D~ha~~-------~~~~~~~~-~~~~~~~~~~~lA~GlDp~ 78 (341)
T 3sz3_A 14 QPSGELSIGNYLGALR--QWQQMQD--DYDCQYCVV-DLHAIT-------VRQDPQAL-HEATLDALAICLAVGVDPK 78 (341)
T ss_dssp CSSSCCBHHHHHHTGG--GHHHHHH--HSEEEEEEC-HHHHTT-------SCCCHHHH-HHHHHHHHHHHHHTTCCTT
T ss_pred CCCCcccHHHHHHHHH--HHHHHHh--cCeEEEEEe-cceeEc-------CCCCHHHH-HHHHHHHHHHHHHcCCChh
Confidence 4789999999988762 2334443 577766543 433321 12455443 4555677788888999776
No 59
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=89.45 E-value=0.34 Score=47.67 Aligned_cols=70 Identities=19% Similarity=0.172 Sum_probs=43.0
Q ss_pred EEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcC
Q psy7914 190 VLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG 269 (365)
Q Consensus 190 I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lg 269 (365)
|..+ --|||+|||||..+++.. +.++ ..|++|.+..+ |.|..- ...++.++ .++...+..++.+.|
T Consensus 38 i~sG-~~PTG~lHLGhyvGal~~--~~~L--Q~~~~~~~~Ia-D~hAlt-------~~~~~~~l-r~~~~~~aa~~lA~G 103 (388)
T 3prh_A 38 IFSG-IQPSGSVTLGNYIGAMKQ--FVEL--QHDYNSYFCIV-DQHAIT-------VPQDRLEL-RKNIRNLAALYLAVG 103 (388)
T ss_dssp EEEE-ECCCSCCBHHHHHHTHHH--HHHT--TTTSEEEEEEC-HHHHTT-------SCCCHHHH-HHHHHHHHHHHHHTT
T ss_pred EEEe-eCCCCcchHHHHHHHHHH--HHHH--HccCcEEEEEe-cceeee-------cCCCHHHH-HHHHHHHHHHHHHhC
Confidence 4433 357899999999887642 1222 24898876653 443321 13455544 444556778888899
Q ss_pred CCcc
Q psy7914 270 CKFN 273 (365)
Q Consensus 270 I~~D 273 (365)
+..+
T Consensus 104 lDp~ 107 (388)
T 3prh_A 104 LDPE 107 (388)
T ss_dssp CCTT
T ss_pred CChh
Confidence 9776
No 60
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=88.12 E-value=0.57 Score=45.34 Aligned_cols=65 Identities=14% Similarity=0.101 Sum_probs=39.0
Q ss_pred CCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914 196 YPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN 273 (365)
Q Consensus 196 npnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D 273 (365)
-|||+|||||..+++-. +.++ ..++++.+..+ |.|..- ...+|.++ .++...+.+++.++|+..+
T Consensus 23 ~PTG~lHLGh~vg~l~~--~~~l--Q~~~~~~~~ia-D~hA~t-------~~~~~~~~-~~~~~~~~~~~lA~GlDp~ 87 (346)
T 3n9i_A 23 QPSGELTIGNYMGALRQ--WVQM--QDDYDCIYCIV-DLHAIT-------ARQDPALL-RKRTLDTLALYLACGIDPK 87 (346)
T ss_dssp CSCSCCBHHHHHHTHHH--HHTT--TTTSEEEEEEC-HHHHTT-------SCCCHHHH-HHHHHHHHHHHHHHTCCTT
T ss_pred CCCCcccHHHHHHHHHH--HHHH--HhhCcEEEEEe-cceeec-------CCCCHHHH-HHHHHHHHHHHHHcCCCcc
Confidence 46799999998877521 1222 24677765543 443321 12455443 4455567778888999776
No 61
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=87.82 E-value=0.43 Score=46.28 Aligned_cols=65 Identities=22% Similarity=0.286 Sum_probs=37.7
Q ss_pred CCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914 197 PSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN 273 (365)
Q Consensus 197 pnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D 273 (365)
|||+|||||..+++. -+.++. ..+++.+.. .|.|+.-. ...+++++ .++...+.+++.++|+..+
T Consensus 31 PTG~lHLGn~~g~l~--~~~~lQ--~~~~~~~~I-aD~ha~~~------~~~~~e~i-~~~~~~~~~~~la~Gldp~ 95 (351)
T 1yi8_B 31 PTGALHLGHLAGSLQ--NRVRLQ--DEAELFVLL-ADVQALTD------HFDRPEQV-RENVLAVALDYLAAGLDPQ 95 (351)
T ss_dssp CSSCCBHHHHHHTHH--HHHHHT--SSSEEEEEE-CHHHHHHH------HTTCHHHH-HHHHHHHHHHHHHHTCCTT
T ss_pred CCCCccHHHHHHHHH--HHHHHH--HhCCeEEEE-ecchhhcC------CCCCHHHH-HHHHHHHHHHHHHhCCChh
Confidence 479999999988652 222222 236765543 33333211 13555544 4445567778889999655
No 62
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=87.58 E-value=0.55 Score=45.90 Aligned_cols=70 Identities=16% Similarity=0.121 Sum_probs=37.0
Q ss_pred CCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN 273 (365)
Q Consensus 195 PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D 273 (365)
--|||.||||| +.+..-.+.++ ...|++|.+..+ |-|+.- ....+.++.++ ..+...+.+.+.++|+..+
T Consensus 63 ~~PTg~lHlG~--gvl~~~~~~~l-Q~~G~~~~~lIa-D~ha~i----~d~~~~~~~~i-~~~~~~~~~~~~a~G~dp~ 132 (373)
T 3vgj_A 63 FEPSGRMHIAQ--GLLKSIIVNKL-TSNGCTFIFWIA-DWFAHL----NNKMSGDLKKI-KKVGSYFIEVWKSCGMNME 132 (373)
T ss_dssp ECCCSSCBHHH--HHHHHHHHHHH-HTTTCEEEEEEC-HHHHHH----TTGGGGCHHHH-HHHHHHHHHHHHHTTCCST
T ss_pred CCCCCCceehh--hHHHHHHHHHH-HHCCCcEEEEEe-cceeEe----cCCCCCCHHHH-HHHHHHHHHHHHHcCCChh
Confidence 34678999999 32222224444 345998877765 333320 00112333332 3334445667777887554
No 63
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=87.40 E-value=1.7 Score=42.60 Aligned_cols=75 Identities=9% Similarity=0.052 Sum_probs=42.7
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ 266 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~ 266 (365)
++.|..+ --|||+|||||..++. .+.++.+..|..|....+-+ + +......+++++. ++...+.+++-
T Consensus 82 ~~~vysG-~~PTG~lHLGh~v~~~---~~~~lQ~~~g~~v~i~I~D~-~------a~~~r~~~~e~i~-~~~~~~~~~~l 149 (386)
T 3hzr_A 82 PTFIFIQ-KYPQKEVALEEYITLE---FARYLQDAFNIQVIIQILDD-I------KVLNREATINEAS-KMSNDLMKYIL 149 (386)
T ss_dssp CEEEEEE-ECCCSSCBGGGHHHHH---HHHHHHHHHCCEEEEEECHH-H------HHHTTSCCHHHHH-HHHHHHHHHHH
T ss_pred CeEEEec-cCCCCCccHHHHHHHH---HHHHHHHhcCCeEEEEeCch-H------HhhcCCCCHHHHH-HHHHHHHHHHH
Confidence 4444444 4578999999977652 23334444577777762221 1 1111225655554 34446667788
Q ss_pred hcCCCcc
Q psy7914 267 GFGCKFN 273 (365)
Q Consensus 267 ~lgI~~D 273 (365)
++|+..+
T Consensus 150 A~GlDp~ 156 (386)
T 3hzr_A 150 AFGFNED 156 (386)
T ss_dssp HTCCCGG
T ss_pred HcCCCCc
Confidence 8888665
No 64
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=87.14 E-value=0.92 Score=43.85 Aligned_cols=64 Identities=19% Similarity=0.200 Sum_probs=38.7
Q ss_pred CCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914 197 PSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN 273 (365)
Q Consensus 197 pnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D 273 (365)
|||.|||||..+++.. +.++.. |+++.+..+ |.|+.- ...+|+++ .++...+.+++.++|+..+
T Consensus 13 PTG~lHLGn~vg~l~~--~~~lQ~--~~~~~~~Ia-D~ha~~-------~~~d~~~i-~~~~~~~~~~~lA~Gldp~ 76 (348)
T 2yy5_A 13 ASGKQHLGNYLGVMQS--LIELQE--QCQLFVFVA-DLHSIT-------VDFQPQAL-KQNNFDLVRTLLAVGLDPQ 76 (348)
T ss_dssp CCTTCBHHHHHHTGGG--HHHHHH--HSEEEEEEC-HHHHTT-------SCCCHHHH-HHHHHHHHHHHHHTTCCTT
T ss_pred CCCcccHHHHHHHHHH--HHHHHh--CCcEEEEEc-Chhhcc-------CCCCHHHH-HHHHHHHHHHHHHhCCChh
Confidence 6699999999987632 223333 787765543 222221 01445444 3455667778888999766
No 65
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=86.51 E-value=0.64 Score=50.90 Aligned_cols=46 Identities=7% Similarity=-0.080 Sum_probs=36.0
Q ss_pred ceEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceEEEecCccccccccc
Q psy7914 52 GVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHILASKTK 109 (365)
Q Consensus 52 g~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~~ 109 (365)
.+.|.|++.+.. .+..|.||||+|+|+++.+ ++++.|+|+.+...+
T Consensus 209 ~~~v~f~~~~~~--------~~~~l~i~TTrPeTl~g~~----avav~P~~~Y~~~~~ 254 (967)
T 1wz2_A 209 YIIIKFELRENG--------EVIYLPAATLRPETVYGVT----NMWVNPNATYVKAKV 254 (967)
T ss_dssp CEEEEEECCCSS--------SCCEEEEEESCGGGGGGCC----EEEECSSSCEEEEEE
T ss_pred eEEEEEEecCCC--------CceEEEEEcCCchHhhhhe----EEEECCCCcEEEEEe
Confidence 367888875420 0245999999999999999 999999998876543
No 66
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=86.36 E-value=1.1 Score=43.81 Aligned_cols=70 Identities=14% Similarity=0.033 Sum_probs=38.8
Q ss_pred CCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHH----HHHHHHHHHHHHhcCCC
Q psy7914 196 YPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWT----VGNIATMKSQLQGFGCK 271 (365)
Q Consensus 196 npnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~----~~~~~~i~~~l~~lgI~ 271 (365)
-|||.|||||....+. .+.++. ..|+++.+..+=. |+. .....|.+++++. ..+...+.+++.++|+.
T Consensus 41 ~PTg~lHlG~yl~~l~--~~~~lQ-~~G~~~~~~iaD~-ha~----~~~~~g~~~e~i~~~~~~~~~~~~~~~~la~G~d 112 (375)
T 2cyc_A 41 EISGYIHLGTGLMAGA--KIADFQ-KAGIKTRVFLADW-HSW----INDKLGGDLEVIQEVALKYFKVGMEKSIEVMGGD 112 (375)
T ss_dssp CCCSCCBHHHHHHHHH--HHHHHH-HTTCBCEEEECHH-HHH----HTTGGGGCHHHHHHHHHHTHHHHHHHHHHHTTCC
T ss_pred CCCCCcCchHHHHHHH--HHHHHH-HCCCcEEEEecCc-EEE----cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4678999999666443 234444 4588877765422 111 1111233444333 33334444889999997
Q ss_pred cc
Q psy7914 272 FN 273 (365)
Q Consensus 272 ~D 273 (365)
.+
T Consensus 113 p~ 114 (375)
T 2cyc_A 113 PK 114 (375)
T ss_dssp GG
T ss_pred cc
Confidence 65
No 67
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=86.16 E-value=1.9 Score=42.30 Aligned_cols=75 Identities=16% Similarity=0.115 Sum_probs=43.5
Q ss_pred ceEEEecCCCCC-CCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHc-CCCHHHHHHHHHHHHHHH
Q psy7914 187 NFYVLSMFPYPS-GSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH-GIDPREWTVGNIATMKSQ 264 (365)
Q Consensus 187 ~~~I~~~~Pnpn-G~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~-g~~~~e~~~~~~~~i~~~ 264 (365)
++.+..+ --|| |.|||||..+++ .+.++++.-|..|....| |. .+.... ..+++++ .++...+.++
T Consensus 74 ~~~vy~G-~~PTa~~lHlGh~v~~~---~~~~lQ~~~~~~v~i~I~-D~------~~~~~r~~~~~e~i-~~~~~~~~~~ 141 (393)
T 3hv0_A 74 LFYLYTG-RGPSSESLHVGHLVPFL---FTKYLQDTFKVPLVIQLT-DD------EKFIFKSNLTLEET-HNYAYENMKD 141 (393)
T ss_dssp CCEEEEE-ECCSSSSCBSTTHHHHH---HHHHHHHHHCCCEEEEEC-HH------HHHHHCTTCCHHHH-HHHHHHHHHH
T ss_pred CeEEEeC-CCCCCCCccHHHHHHHH---HHHHHHHhcCCCeEeecc-Ch------HHHhhccCCCHHHH-HHHHHHHHHH
Confidence 3444444 3477 689999966654 344555655777666322 21 122223 5565544 4455567788
Q ss_pred HHhcCCCcc
Q psy7914 265 LQGFGCKFN 273 (365)
Q Consensus 265 l~~lgI~~D 273 (365)
+.++|+..+
T Consensus 142 ~lA~GlDp~ 150 (393)
T 3hv0_A 142 IIACGFDPE 150 (393)
T ss_dssp HHTTCCCTT
T ss_pred HHHcCCCCc
Confidence 888898655
No 68
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=85.34 E-value=1.6 Score=46.06 Aligned_cols=71 Identities=14% Similarity=0.063 Sum_probs=40.1
Q ss_pred CCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914 194 FPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN 273 (365)
Q Consensus 194 ~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D 273 (365)
.--|||.||||| +.+..-.+.+++ ..|++|.+..+ |-|+.-. ...+.+++++ ..+...+.+++.++|+..+
T Consensus 46 G~~PTg~lHLG~--~v~~~~~~~~lQ-~~G~~~~~lIa-D~ha~~~----d~~~~~~e~i-~~~~~~~~~~~lA~GlDp~ 116 (690)
T 3p0j_A 46 GFEPSGRMHIAQ--GIFKAVNVNKCT-AAGCEFVFWVA-DWFALMN----DKVGGELEKI-RIVGRYLIEVWKAAGMDMD 116 (690)
T ss_dssp EECCCSCCBHHH--HHHHHHHHHHHH-HTTEEEEEEEC-CGGGGGG----CTTTTHHHHH-HHHHHHHHHHHHHTTCCGG
T ss_pred eecCCCcchhHh--hHHHHHHHHHHH-HCCCcEEEEEe-eeEEEec----CCCcchHHHH-HHHHHHHHHHHHHcCCChH
Confidence 335788999999 222222244444 46998877766 4454311 0122333333 3444566778888898655
No 69
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=84.72 E-value=0.93 Score=44.96 Aligned_cols=74 Identities=22% Similarity=0.301 Sum_probs=40.3
Q ss_pred cCCCCCCC-CchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCC--CCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcC
Q psy7914 193 MFPYPSGS-LHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDA--FGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG 269 (365)
Q Consensus 193 ~~PnpnG~-LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd--~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lg 269 (365)
.---|||+ |||||... --.+.++. ..|+++.+..|=.+ .|.|--....+.-++++++ .++...+++++.++
T Consensus 37 ~G~dPTg~sLHlGh~v~---l~~~~~lQ-~~G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i-~~n~~~~~~~~~~~- 110 (420)
T 1jil_A 37 CGADPTADSLHIGHLLP---FLTLRRFQ-EHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQV-DKNIEGISKQMHNI- 110 (420)
T ss_dssp EEECCSSSSCBHHHHHH---HHHHHHHH-HTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHH-HHHHHHHHHHHHHH-
T ss_pred EeeCCCCCCccHHHHHH---HHHHHHHH-HCCCcEEEEEcCceeEecCCCccccccccCCHHHH-HHHHHHHHHHHHHH-
Confidence 33457899 99999663 22344444 46999887765332 1222111111112344444 45667777777777
Q ss_pred CCc
Q psy7914 270 CKF 272 (365)
Q Consensus 270 I~~ 272 (365)
+.+
T Consensus 111 ld~ 113 (420)
T 1jil_A 111 FEF 113 (420)
T ss_dssp SCC
T ss_pred hCC
Confidence 544
No 70
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=82.70 E-value=3.3 Score=41.18 Aligned_cols=76 Identities=13% Similarity=0.195 Sum_probs=42.7
Q ss_pred ceEEEecCCCCC-CCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy7914 187 NFYVLSMFPYPS-GSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQL 265 (365)
Q Consensus 187 ~~~I~~~~Pnpn-G~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l 265 (365)
++.|..+ --|| |.|||||..+++. +.++....|+.+.+..| |.++.- .....++.+ +.++...+.+++
T Consensus 102 ~~~vy~G-~dPTag~LHLGh~v~~~~---l~~lQ~~~g~~~i~lI~-D~ta~l-----~~~~~t~e~-i~~~~~~~~~~~ 170 (432)
T 2ip1_A 102 PFFLYTG-RGPSSDSMHLGHMIPFVF---TKWLQEVFDVPLVIELT-DDEKFL-----FKHKLTIND-VKNFARENAKDI 170 (432)
T ss_dssp CCEEEEE-ECCCSSCCBGGGHHHHHH---HHHHHHHHTCCEEEEEC-HHHHHH-----HCTTCCHHH-HHHHHHHHHHHH
T ss_pred CeEEEEe-ecCCCCCccHHHHHHHHH---HHHHHHHcCCeEEEEEe-ccccee-----CCCCCCHHH-HHHHHHHHHHHH
Confidence 3444444 3467 8999999887652 33444436888777766 322210 001245443 344445556677
Q ss_pred HhcCCCcc
Q psy7914 266 QGFGCKFN 273 (365)
Q Consensus 266 ~~lgI~~D 273 (365)
.++|+..+
T Consensus 171 lA~GlDp~ 178 (432)
T 2ip1_A 171 IAVGFDPK 178 (432)
T ss_dssp HTTTCCGG
T ss_pred HHhCCCCC
Confidence 78888654
No 71
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=82.47 E-value=2.2 Score=41.13 Aligned_cols=76 Identities=12% Similarity=0.059 Sum_probs=41.8
Q ss_pred eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 267 (365)
Q Consensus 188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~ 267 (365)
..+..+ --|||.|||||....+ -.+.++. ..|+++.+..+=. |+. .....+.++++ +.++...+.+++.+
T Consensus 41 ~~vy~G-~~PTg~lHlGhyl~~l--~~~~~lQ-~~G~~~~~~i~D~-~a~----~~~~~~~~~e~-i~~~~~~~~~~~la 110 (348)
T 2j5b_A 41 FTAYNG-FEPSGRIHIAQALITV--MNTNNMI-ECGGQMIIYIADW-FAK----MNLKMNGDINK-IRELGRYFIEVFKA 110 (348)
T ss_dssp EEEEEE-ECCCSSCBHHHHHHHH--HHHHHHH-HTTEEEEEEECHH-HHH----HTTGGGGCHHH-HHHHHHHHHHHHHH
T ss_pred CEEEec-cCCCCCCchhHHHHHH--HHHHHHH-HcCCcEEEEeccc-hhh----hCCCCCCCHHH-HHHHHHHHHHHHHH
Confidence 444433 2456999999944433 2344444 3588877765422 221 00111234433 34555677778888
Q ss_pred cCCCcc
Q psy7914 268 FGCKFN 273 (365)
Q Consensus 268 lgI~~D 273 (365)
+|+..+
T Consensus 111 ~Gldp~ 116 (348)
T 2j5b_A 111 CGINLD 116 (348)
T ss_dssp TTCCGG
T ss_pred hcCCcc
Confidence 898765
No 72
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=82.30 E-value=1.3 Score=43.47 Aligned_cols=34 Identities=29% Similarity=0.430 Sum_probs=22.8
Q ss_pred CCCCCCC-CchHHHHHHHHhhHHHHHHHHCCCcEEeccC
Q psy7914 194 FPYPSGS-LHMGHVRVYTISDTLARYYAMNGKNVFQPMG 231 (365)
Q Consensus 194 ~PnpnG~-LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g 231 (365)
---|||+ |||||... + -.+.++.+ .|+++.+..|
T Consensus 70 G~dPTg~sLHlGhlv~-l--~~l~~lQ~-~G~~~~~lIg 104 (392)
T 1y42_X 70 GIDPTAPSLHVGHLLP-L--MPLFWMYL-EGYKAFTLIG 104 (392)
T ss_dssp EECCCSSSCBGGGHHH-H--HHHHHHHH-HTCEEEEEEC
T ss_pred eecCCCCCccHHHHHH-H--HHHHHHHH-cCCcEEEEEc
Confidence 3457899 99999773 2 23555544 4898877765
No 73
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=82.28 E-value=3.1 Score=41.62 Aligned_cols=76 Identities=16% Similarity=0.139 Sum_probs=43.2
Q ss_pred ceEEEecCCCCC-CCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy7914 187 NFYVLSMFPYPS-GSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQL 265 (365)
Q Consensus 187 ~~~I~~~~Pnpn-G~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l 265 (365)
++.|..+ --|| |.|||||..+++ .+.+++..-|..|....| .+ .....+...+++++ .++...+.+++
T Consensus 91 p~~vytG-~dPTagsLHLGH~v~~~---~l~~lQ~~~g~~v~I~Ig-----D~-~a~~~r~~lt~E~I-~~n~~~~~~~~ 159 (451)
T 3foc_A 91 PIYIYTG-RGPSSGALHLGHLLPFI---FTKYLQDAFKCYVVIQIT-----DD-EKFLRNRSLSYAEV-DSYTRENIKDI 159 (451)
T ss_dssp CEEEEEE-ECCCSSCCBHHHHHHHH---HHHHHHHHHTCEEEEEEC-----HH-HHHHHCTTCCHHHH-HHHHHHHHHHH
T ss_pred CeEEEec-CCCCCCCccHHHHHHHH---HHHHHHHccCceEEEEee-----Cc-HHhhcccCCCHHHH-HHHHHHHHHHH
Confidence 4554444 4577 889999976653 334455555777776422 22 11111224565554 44555677788
Q ss_pred HhcCCCcc
Q psy7914 266 QGFGCKFN 273 (365)
Q Consensus 266 ~~lgI~~D 273 (365)
-++|+..+
T Consensus 160 lA~GlDpe 167 (451)
T 3foc_A 160 IACGFDPD 167 (451)
T ss_dssp HTTTCCGG
T ss_pred HHcCCCCC
Confidence 88888654
No 74
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=80.13 E-value=1.9 Score=43.47 Aligned_cols=75 Identities=16% Similarity=0.213 Sum_probs=42.3
Q ss_pred ceEEEecCCCCC-CCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy7914 187 NFYVLSMFPYPS-GSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQL 265 (365)
Q Consensus 187 ~~~I~~~~Pnpn-G~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l 265 (365)
++.|..+ --|| |.|||||..+++. +.++....|+.|.+..|=.+ +.- . ..++++++ .++...+..++
T Consensus 155 ~~~vy~G-~dPTag~LHLGh~v~~~~---~~~lQ~~~g~~~iilI~D~~-a~i----g--d~lt~e~i-~~n~~~~~~~~ 222 (477)
T 1r6t_A 155 PFYLYTG-RGPSSEAMHVGHLIPFIF---TKWLQDVFNVPLVIQMTDDE-KYL----W--KDLTLDQA-YGDAVENAKDI 222 (477)
T ss_dssp CEEEEEE-ECCCTTCCBGGGHHHHHH---HHHHHHHHTCCEEEEECHHH-HHH----H--SSCCHHHH-HHHHHHHHHHH
T ss_pred CcEEEEc-ccCCCCCccHHHHHHHHH---HHHHHHHhCCcEEEEEecce-eee----c--CCCCHHHH-HHHHHHHHHHH
Confidence 4444444 3477 8999999988653 23344336888766655322 110 0 03454443 44444566777
Q ss_pred HhcCCCcc
Q psy7914 266 QGFGCKFN 273 (365)
Q Consensus 266 ~~lgI~~D 273 (365)
.++|+..+
T Consensus 223 lA~GlDp~ 230 (477)
T 1r6t_A 223 IACGFDIN 230 (477)
T ss_dssp HTTCCCTT
T ss_pred HHhCCCCC
Confidence 78888654
No 75
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=79.80 E-value=2.6 Score=42.00 Aligned_cols=75 Identities=16% Similarity=0.213 Sum_probs=42.1
Q ss_pred ceEEEecCCCCC-CCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy7914 187 NFYVLSMFPYPS-GSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQL 265 (365)
Q Consensus 187 ~~~I~~~~Pnpn-G~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l 265 (365)
++.|..+ --|| |.|||||..+++. +.++....|+.+.+..|=.+ +.-- ..++++++ .++...+.+++
T Consensus 108 ~~~vy~G-~dPTag~LHLGh~v~~~~---~~~lQ~~~G~~~iilIgD~t-a~ig------d~lt~e~i-~~n~~~~~~~~ 175 (437)
T 1r6u_A 108 PFYLYTG-RGPSSEAMHVGHLIPFIF---TKWLQDVFNVPLVIQMTDDE-KYLW------KDLTLDQA-YGDAVENAKDI 175 (437)
T ss_dssp CEEEEEE-ECCCSSCCBHHHHHHHHH---HHHHHHHHTCCEEEEECHHH-HHHH------SSCCHHHH-HHHHHHHHHHH
T ss_pred CcEEEEc-ccCCCCCccHHHHHHHHH---HHHHHHHhCCcEEEEEecce-eeec------CCCCHHHH-HHHHHHHHHHH
Confidence 4444444 3477 8999999887652 33444436888766655321 1100 03454443 34444556777
Q ss_pred HhcCCCcc
Q psy7914 266 QGFGCKFN 273 (365)
Q Consensus 266 ~~lgI~~D 273 (365)
.++|+..+
T Consensus 176 lA~GlDp~ 183 (437)
T 1r6u_A 176 IACGFDIN 183 (437)
T ss_dssp HTTTCCGG
T ss_pred HHhCCCcc
Confidence 78888654
No 76
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=79.35 E-value=2.1 Score=37.67 Aligned_cols=54 Identities=9% Similarity=-0.109 Sum_probs=38.2
Q ss_pred ChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCcc
Q psy7914 282 DPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARV 337 (365)
Q Consensus 282 d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~ 337 (365)
+..|......++.+|.......+.....|-|+.|+-.....+. -.+||.||.+-
T Consensus 128 E~ehe~~~~~~l~~l~~~~~~~~~~~~~~~C~~CG~~~~g~~~--p~~CP~C~~~k 181 (191)
T 1lko_A 128 EEFHEKRFLDFARNIKEGRVFLREQATKWRCRNCGYVHEGTGA--PELCPACAHPK 181 (191)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSEEEEEEEEEETTTCCEEEEEEC--CSBCTTTCCBG
T ss_pred HHHHHHHHHHHHHhhhcccccccCCCceEEECCCCCEeeCCCC--CCCCCCCcCCH
Confidence 3567777788888887765555566678999999976543232 12899999974
No 77
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=79.16 E-value=1.1 Score=48.05 Aligned_cols=59 Identities=20% Similarity=0.405 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeeeEeCchhHHHHHhhhc
Q psy7914 288 WTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDS 361 (365)
Q Consensus 288 ~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~~ 361 (365)
.-..+++.|.++|++........ ..|.|++||.+++.+.++||||+++++++++.+++.
T Consensus 362 a~~~i~~~L~~~g~~~~~~~~~h---------------~~p~c~r~~~~~~~~~~~qWF~~~~~~~~~~~~~~~ 420 (821)
T 1ile_A 362 ANRAILRDLRGRGLLFKEESYLH---------------SYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQ 420 (821)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEE---------------EEEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeeeeecccc---------------cCCEecCCCCEEEEEecchhhhchHHHHHHHHHHhc
Confidence 34677788999998755422111 137799999999999999999999999999887653
No 78
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=78.54 E-value=1.8 Score=42.99 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=36.9
Q ss_pred CCCCCCC-CchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCC--CCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914 194 FPYPSGS-LHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDA--FGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 267 (365)
Q Consensus 194 ~PnpnG~-LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd--~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~ 267 (365)
---|||+ |||||... --.+.++ ...|+++.+..|=.+ .|.|--....+.-++++++ .++...+++++..
T Consensus 36 G~dPTg~sLHlGh~v~---l~~l~~l-Q~~G~~~i~lIgd~ta~igdpsgk~~~R~~l~~e~i-~~n~~~~~~q~~~ 107 (419)
T 2ts1_A 36 GFDPTADSLHIGHLAT---ILTMRRF-QQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETV-EAWSARIKEQLGR 107 (419)
T ss_dssp EECCSSSSCBGGGHHH---HHHHHHH-HHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHH-HHHHHHHHHHHTT
T ss_pred eeCCCCCCccHHHHHH---HHHHHHH-HHCCCcEEEEEcCceeEecCCCCccccccCCCHHHH-HHHHHHHHHHHHH
Confidence 3457899 99999663 2234444 446999887765332 1222111111112344444 4556777776665
No 79
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=76.54 E-value=1.8 Score=41.29 Aligned_cols=33 Identities=27% Similarity=0.447 Sum_probs=22.2
Q ss_pred CCCCCC-CchHHHHHHHHhhHHHHHHHHCCCcEEeccC
Q psy7914 195 PYPSGS-LHMGHVRVYTISDTLARYYAMNGKNVFQPMG 231 (365)
Q Consensus 195 PnpnG~-LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g 231 (365)
--|||+ |||||... --.+.++ ...|+++.+..|
T Consensus 40 ~~PTg~slHlGh~l~---l~~~~~l-Q~~g~~~~~~i~ 73 (322)
T 2yxn_A 40 FDPTADSLHLGHLVP---LLCLKRF-QQAGHKPVALVG 73 (322)
T ss_dssp ECCSSSSCBHHHHHH---HHHHHHH-HHTTCEEEEEEC
T ss_pred ecCCCCcccHHHHHH---HHHHHHH-HHcCCcEEEEEc
Confidence 347899 99999662 2234444 445898877766
No 80
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=75.97 E-value=2.1 Score=41.41 Aligned_cols=33 Identities=30% Similarity=0.473 Sum_probs=22.1
Q ss_pred CCCCCC-CchHHHHHHHHhhHHHHHHHHCCCcEEeccC
Q psy7914 195 PYPSGS-LHMGHVRVYTISDTLARYYAMNGKNVFQPMG 231 (365)
Q Consensus 195 PnpnG~-LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g 231 (365)
--|||+ ||||| ...+.. +.++. ..|+++.+..|
T Consensus 53 ~~PTg~sLHLGh-l~~l~~--~~~lQ-~~G~~~~~lIa 86 (356)
T 2pid_A 53 FDPTADSLHVGH-LLALLG--LFHLQ-RAGHNVIALVG 86 (356)
T ss_dssp ECCSSSSCBHHH-HHHHHH--HHHHH-HTTCEEEEEEC
T ss_pred ecCCCCcccHHH-HHHHHH--HHHHH-HCCCcEEEEEc
Confidence 347897 99999 444443 55544 46898877765
No 81
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=75.11 E-value=6.7 Score=38.45 Aligned_cols=75 Identities=17% Similarity=0.121 Sum_probs=44.0
Q ss_pred ceEEEecCCCCCC-CCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy7914 187 NFYVLSMFPYPSG-SLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQL 265 (365)
Q Consensus 187 ~~~I~~~~PnpnG-~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l 265 (365)
++.|..+ --||| .|||||..++ ..+.+++...|..|....|-+. .+.....+++++ .++...+.+++
T Consensus 78 ~~~vy~G-~~PTg~~lHLGh~v~~---~~~~~lQ~~~~~~v~i~I~D~~-------~~l~~~~~~e~i-~~~~~~~~~~~ 145 (395)
T 3i05_A 78 PFYLYTG-RGPSSESMHMGHLIPF---MFTKWLQDSFRVPLVIQMTDDE-------KFYFRNIPMEQV-EAMTTENIKDI 145 (395)
T ss_dssp CEEEEEE-ECCCSSCCBGGGSHHH---HHHHHHHHHHTCCEEEEECHHH-------HHHHSCCCHHHH-HHHHHHHHHHH
T ss_pred CeEEEEe-ecCCCccchHHHHHHH---HHHHHHHHhcCCcEEEEEcchH-------HHhcCCCCHHHH-HHHHHHHHHHH
Confidence 4444444 45899 6999997654 3344455555777777533221 122233565554 44555777788
Q ss_pred HhcCCCcc
Q psy7914 266 QGFGCKFN 273 (365)
Q Consensus 266 ~~lgI~~D 273 (365)
.++|+..+
T Consensus 146 lA~GlDp~ 153 (395)
T 3i05_A 146 IAMGFDPE 153 (395)
T ss_dssp HTTTCCTT
T ss_pred HHcCCCCC
Confidence 88888654
No 82
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=72.85 E-value=1.7 Score=47.01 Aligned_cols=36 Identities=8% Similarity=0.039 Sum_probs=29.2
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceEEEecCccc
Q psy7914 53 VRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHI 103 (365)
Q Consensus 53 ~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f~~l~~~h~ 103 (365)
+.|.|++.+ +..|.||||+|+|+++.+ ++++.|+++
T Consensus 198 ~~v~f~~~~-----------~~~l~v~TTrPeTl~g~~----avav~P~~~ 233 (862)
T 1gax_A 198 YTLRYEVEG-----------GGFIEIATVRPETVFADQ----AIAVHPEDE 233 (862)
T ss_dssp EEEECCCSS-----------SCCCEEEESCSGGGTTCC----CEEECSSCC
T ss_pred EEEEEEecC-----------CCEEEEEeCCccccccce----EEEECCCcc
Confidence 566777643 135999999999999999 999999863
No 83
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=72.43 E-value=2.7 Score=41.83 Aligned_cols=34 Identities=32% Similarity=0.398 Sum_probs=22.5
Q ss_pred CCCCCCC-CchHHHHHHHHhhHHHHHHHHCCCcEEeccC
Q psy7914 194 FPYPSGS-LHMGHVRVYTISDTLARYYAMNGKNVFQPMG 231 (365)
Q Consensus 194 ~PnpnG~-LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g 231 (365)
---|||+ ||||| ...+. .+.++. ..|+++.+..|
T Consensus 38 G~dPTg~sLHLGh-lv~l~--~l~~lQ-~~G~~~i~lIg 72 (432)
T 2jan_A 38 GFDPTAPSLHAGH-LVPLL--TLRRFQ-RAGHRPIVLAG 72 (432)
T ss_dssp EECCSSSSCBGGG-HHHHH--HHHHHH-HTTCEEEEEEC
T ss_pred eeCCCCCCcCHHH-HHHHH--HHHHHH-HCCCcEEEEEc
Confidence 3457896 99999 43333 355554 46999888764
No 84
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=70.18 E-value=3.1 Score=41.31 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=22.8
Q ss_pred CCCCCCC-CchHHHHHHHHhhHHHHHHHHCCCcEEeccCC
Q psy7914 194 FPYPSGS-LHMGHVRVYTISDTLARYYAMNGKNVFQPMGW 232 (365)
Q Consensus 194 ~PnpnG~-LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~ 232 (365)
---|||+ |||||... --.+.++. ..|+++.+..|=
T Consensus 43 G~dPTg~sLHlGh~v~---l~~l~~lQ-~~G~~~i~lIgD 78 (432)
T 1h3f_A 43 GADPTRPDLHLGHAVV---LRKMRQFQ-ELGHKVVLIIGD 78 (432)
T ss_dssp EECTTCCSCBHHHHHH---HHHHHHHH-HTTCEEEEEECC
T ss_pred cccCCCCCCchhhHHH---HHHHHHHH-HCCCCEEEEEcc
Confidence 3457886 99999762 33444444 459988777663
No 85
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=69.47 E-value=11 Score=36.97 Aligned_cols=75 Identities=12% Similarity=0.119 Sum_probs=42.5
Q ss_pred ceEEEecCCCCCC-CCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy7914 187 NFYVLSMFPYPSG-SLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQL 265 (365)
Q Consensus 187 ~~~I~~~~PnpnG-~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l 265 (365)
++.|..+ --||| .|||||..++. .+.+++..-|..|....+ |.|.. .....+++++ .++...+.+++
T Consensus 101 p~~vy~G-~~PTg~~lHLGh~v~~~---~~~~lQ~~~g~~~~i~Ia-D~~a~------l~~~~~~e~i-~~~~~~~~~~~ 168 (406)
T 3tze_A 101 PFYLYTG-RGPSSKTMHIGHTIPFL---LCKYMQDAFKIRLVIQIT-DDEKF------LWKSMRLEDA-MAYGRENIKDI 168 (406)
T ss_dssp CEEEEEE-ECCCSSCCBGGGHHHHH---HHHHHHHHHTCCEEEEEC-HHHHH------HHSSCCHHHH-HHHHHHHHHHH
T ss_pred CeEEEEe-eCCCCCcccHHHHHHHH---HHHHHHHhcCCcEEEEee-ChHHH------cCCCCCHHHH-HHHHHHHHHHH
Confidence 4555544 45788 79999977652 333344444777766432 32210 1123555444 44455677778
Q ss_pred HhcCCCcc
Q psy7914 266 QGFGCKFN 273 (365)
Q Consensus 266 ~~lgI~~D 273 (365)
-++|+..+
T Consensus 169 lA~GlDp~ 176 (406)
T 3tze_A 169 VTLGFDPK 176 (406)
T ss_dssp HTTTCCGG
T ss_pred HHcCCCcc
Confidence 88888655
No 86
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=68.53 E-value=22 Score=37.30 Aligned_cols=75 Identities=8% Similarity=-0.100 Sum_probs=46.1
Q ss_pred ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHH-CCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy7914 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAM-NGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQL 265 (365)
Q Consensus 187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~-~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l 265 (365)
+.-|...| ++|.||+||+-...- ++..|++. -|++|.+..+-+++ ..-.+.|.+++ -+.++.....+++
T Consensus 382 ~l~~~~~p--s~g~lHLGh~v~~~k--~l~~~~~~~~g~~v~ilIaD~~A-----~i~d~~g~~~e-~i~~~~~y~~~~~ 451 (690)
T 3p0j_A 382 PHACMWMP--ALLKVPLDVAEGMIK--VTKDFIAAHPEGTVTLVLPDWSA-----VASDEITGVEK-DISAALQVNCALL 451 (690)
T ss_dssp CEEEEECC--CCSSCBHHHHHHHHH--HHHHHHHHCSSCEEEEEECTTHH-----HHTTCTTCCHH-HHHHHHHHHHHHH
T ss_pred cceEEecC--CCCCcccchHHHHHH--HHHHHHHHcCCCeEEEEEecchh-----hhCCCCCCCHH-HHHHHHHHHHHHH
Confidence 33344444 999999999876532 35566665 37888877665431 11112344543 3445566778889
Q ss_pred HhcCCC
Q psy7914 266 QGFGCK 271 (365)
Q Consensus 266 ~~lgI~ 271 (365)
..+|..
T Consensus 452 ~alG~d 457 (690)
T 3p0j_A 452 KAYGLP 457 (690)
T ss_dssp HHHTCC
T ss_pred HhcCCC
Confidence 999985
No 87
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=67.30 E-value=0.92 Score=49.42 Aligned_cols=54 Identities=11% Similarity=0.089 Sum_probs=37.3
Q ss_pred cccceEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceEEEecCcccccccccc
Q psy7914 49 EPNGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHILASKTKE 110 (365)
Q Consensus 49 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~~a 110 (365)
+|....|.|++.+.... . ..+..|.||||+|.||++.. ++++.|+|+.+..++.
T Consensus 204 ~~~~~~v~f~~~~~~g~---~-~~~~~~~i~TTrP~Tl~~~~----av~v~p~~~Y~~v~~~ 257 (917)
T 1ffy_A 204 RSASIYVAFNVKDDKGV---V-DADAKFIIWTTTPWTIPSNV----AITVHPELKYGQYNVN 257 (917)
T ss_dssp EEEEEECCBCCCSSTTG---G-GTTCCBCCEESCGGGSSCCB----CCCCCTTCCCCCCCTT
T ss_pred cCceEEEEEEecccccc---c-CCCCeEEEEeCCcchhhhce----EEEECCCCceEEEEeC
Confidence 44455667776431000 0 01345999999999999999 9999999988776543
No 88
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=63.23 E-value=4.2 Score=36.08 Aligned_cols=47 Identities=13% Similarity=-0.056 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCC-CccCCCCccE
Q psy7914 283 PKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQG-ISWRSGARVE 338 (365)
Q Consensus 283 ~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~-~c~~~g~~~e 338 (365)
..|......++.+|. +| .+...|.|..|+-.... ..| +||.||.+-.
T Consensus 150 ~~H~~~~~~ll~~l~-~~----~~~~~~~C~~CG~i~~g----~~p~~CP~C~~~k~ 197 (202)
T 1yuz_A 150 SVHAERYLAAYNDID-AP----DDDKFHLCPICGYIHKG----EDFEKCPICFRPKD 197 (202)
T ss_dssp HHHHHHHHHHHHTTT-CC----CSCCEEECSSSCCEEES----SCCSBCTTTCCBGG
T ss_pred HHHHHHHHHHHHHHh-cC----CCCcEEEECCCCCEEcC----cCCCCCCCCCCChH
Confidence 345544455544443 34 55678999999966442 234 8999998743
No 89
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=61.70 E-value=5.1 Score=27.26 Aligned_cols=32 Identities=16% Similarity=-0.101 Sum_probs=24.8
Q ss_pred eeecCCCCcccccccccc--CCCccCCCCccEEE
Q psy7914 309 VNWDPIDNTVLADEQVDE--QGISWRSGARVEKR 340 (365)
Q Consensus 309 v~yc~~~~t~Ls~~eve~--~~~c~~~g~~~e~~ 340 (365)
.|=|-+|++.+++.|++. .-+|+.||-.+-.+
T Consensus 3 iY~C~rCg~~fs~~el~~lP~IrCpyCGyrii~K 36 (48)
T 4ayb_P 3 VYRCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFM 36 (48)
T ss_dssp --CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEEC
T ss_pred EEEeeccCCCccHHHHhhCCCcccCccCcEEEEE
Confidence 466999999999999975 34899999876543
No 90
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=60.33 E-value=13 Score=29.89 Aligned_cols=83 Identities=6% Similarity=-0.092 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHhcCCC-cc-CCCcccccChhhHHHHHHHHHHHHHCC-CEE------EeCcceeecCCCCccccccc
Q psy7914 253 WTVGNIATMKSQLQGFGCK-FN-WESELATCDPKYYKWTQALFLDLYHAG-LVY------RKEATVNWDPIDNTVLADEQ 323 (365)
Q Consensus 253 ~~~~~~~~i~~~l~~lgI~-~D-~~~~~~t~d~~~~~~v~~~f~~L~~kG-~Iy------~~~~~v~yc~~~~t~Ls~~e 323 (365)
++....+.+.+..+.=|.. .. -...+-..+.-+.+..+..|..+.+.- ... +.....|+|..|+....-.+
T Consensus 8 i~~~i~~~~~~~A~~~g~~~V~~V~l~IG~ls~v~~e~l~f~f~~~~~gt~~~e~a~L~i~~~p~~~~C~~CG~~~e~~~ 87 (119)
T 2kdx_A 8 VVSSLIALCEEHAKKNQAHKIERVVVGIGERSAMDKSLFVSAFETFREESLVCKDAILDIVDEKVELECKDCSHVFKPNA 87 (119)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCEEEEEEETTSCCCHHHHHHHHHHHGGGCTTTSSCCEEEEEECCEEECSSSSCEECSCC
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEEEEeehhccccHHHHHHHHHHHHhCChhhcCcEEEEEeccceEEcCCCCCEEeCCC
Confidence 3455566666665555542 11 001112223233444566666664333 222 45566899999998765433
Q ss_pred cccCC-CccCCCCcc
Q psy7914 324 VDEQG-ISWRSGARV 337 (365)
Q Consensus 324 ve~~~-~c~~~g~~~ 337 (365)
. .. .||.||++.
T Consensus 88 ~--~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 88 L--DYGVCEKCHSKN 100 (119)
T ss_dssp S--TTCCCSSSSSCC
T ss_pred C--CCCcCccccCCC
Confidence 2 45 799999973
No 91
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=58.70 E-value=9.4 Score=32.89 Aligned_cols=53 Identities=15% Similarity=-0.021 Sum_probs=35.5
Q ss_pred cChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccE
Q psy7914 281 CDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVE 338 (365)
Q Consensus 281 ~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e 338 (365)
.+..|.+....++..+ ++|-.+. ....|-|+.|+-.... +. -.+||.||.+-.
T Consensus 112 ~E~~H~~~~~~~l~~l-~~~~~~~-~~~~~~C~~CG~i~~~-~~--p~~CP~Cg~~~~ 164 (170)
T 3pwf_A 112 AEKIHAELYRKAKEKA-EKGEDIE-IKKVYICPICGYTAVD-EA--PEYCPVCGAPKE 164 (170)
T ss_dssp HHHHHHHHHHHHHHHH-TTTCCCC-CSCEEECTTTCCEEES-CC--CSBCTTTCCBGG
T ss_pred HHHHHHHHHHHHHHHH-hcCCcCC-CCCeeEeCCCCCeeCC-CC--CCCCCCCCCCHH
Confidence 3456777777777766 4665553 4578999999976542 22 238999998753
No 92
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=57.13 E-value=4 Score=34.65 Aligned_cols=36 Identities=8% Similarity=-0.175 Sum_probs=24.9
Q ss_pred eCcceeecCCCCccccccccccCCCccCCCCccEEEEe
Q psy7914 305 KEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRL 342 (365)
Q Consensus 305 ~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~ 342 (365)
.....+.|..|+...... .....||.||+++...+.
T Consensus 128 ~~~~~y~C~~Cg~~~~~~--~~~~~Cp~CG~~~~~~~~ 163 (165)
T 2lcq_A 128 VIKWRYVCIGCGRKFSTL--PPGGVCPDCGSKVKLIPR 163 (165)
T ss_dssp CCCCCEEESSSCCEESSC--CGGGBCTTTCCBEEECCC
T ss_pred cccEEEECCCCCCcccCC--CCCCcCCCCCCcceeCCc
Confidence 344568999999877643 113479999999765543
No 93
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=57.12 E-value=33 Score=28.37 Aligned_cols=94 Identities=14% Similarity=0.021 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHhcCCC-cc-CCCcccccChhhHHHHHHHHHHHHHCCCEEE-------eCcceeecCCCCcccccc
Q psy7914 252 EWTVGNIATMKSQLQGFGCK-FN-WESELATCDPKYYKWTQALFLDLYHAGLVYR-------KEATVNWDPIDNTVLADE 322 (365)
Q Consensus 252 e~~~~~~~~i~~~l~~lgI~-~D-~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~-------~~~~v~yc~~~~t~Ls~~ 322 (365)
.++....+.+.+..+.-|.. .. -....-..+.-+.+..+..|..+. +|-+.+ .....|+|..|+....-.
T Consensus 5 sia~~iv~~v~~~A~~~g~~~V~~V~l~IG~ls~v~~e~l~faf~~~~-~gt~~e~A~L~i~~~p~~~~C~~CG~~~~~~ 83 (139)
T 3a43_A 5 ALADAIVRTVLDYAQREGASRVKAVRVVLGELQDVAEDIVKFAMEQLF-AGTIAEGAEIEFVEEEAVFKCRNCNYEWKLK 83 (139)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEEEEEETTCCCCHHHHHHHHHHHH-TTSTTTTCEEEEEEECCEEEETTTCCEEEGG
T ss_pred HHHHHHHHHHHHHHHHcCCCeehhHHhhHHHHhhhhHHHHHHHHHHHH-cCCcccCCEEEEEecCCcEECCCCCCEEecc
Confidence 34566667777776666652 11 001122223334455567777664 444333 456789999999776544
Q ss_pred cc---------cc----------CCCccCCCCc-cEEEEeeeee
Q psy7914 323 QV---------DE----------QGISWRSGAR-VEKRRLSQWF 346 (365)
Q Consensus 323 ev---------e~----------~~~c~~~g~~-~e~~~~~~~f 346 (365)
++ +. ...||.||++ .+...-+-++
T Consensus 84 ~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i~~G~el~ 127 (139)
T 3a43_A 84 EVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVVKGRGVY 127 (139)
T ss_dssp GCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEEEESSCEE
T ss_pred cccccccccccccccccccccccCCcCccccCCccEEecCCeEE
Confidence 41 11 4579999997 3444444333
No 94
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=49.20 E-value=7.6 Score=30.56 Aligned_cols=45 Identities=16% Similarity=0.131 Sum_probs=24.4
Q ss_pred HHCCCEEEeCcceeecCCCCcccccc-----------ccccCCCccCCCCccEEEE
Q psy7914 297 YHAGLVYRKEATVNWDPIDNTVLADE-----------QVDEQGISWRSGARVEKRR 341 (365)
Q Consensus 297 ~~kG~Iy~~~~~v~yc~~~~t~Ls~~-----------eve~~~~c~~~g~~~e~~~ 341 (365)
...|++-++......||.|+..|.-. ++...+.||.|+.++|.-+
T Consensus 20 ~~~~~~~~~~~M~~~CP~Cq~eL~~~g~~~hC~~C~~~f~~~a~CPdC~q~LevLk 75 (101)
T 2jne_A 20 HSSGLVPRGSHMELHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQVLK 75 (101)
T ss_dssp -----------CCCBCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSBCEEEE
T ss_pred cccccccCcccccccCccCCCcceecCCEEECccccchhhccccCcchhhHHHHHH
Confidence 34566666655557899999887632 1223467999999998765
No 95
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis}
Probab=46.63 E-value=11 Score=35.64 Aligned_cols=31 Identities=6% Similarity=-0.302 Sum_probs=27.5
Q ss_pred cEEEECCCCchhhhccccceEEEecCccccccccc
Q psy7914 75 TLSIWLPEDTIEDVAKSQGQYITVKSSHILASKTK 109 (365)
Q Consensus 75 ~~~v~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~~ 109 (365)
.+-|||++|.||++.. .+++.|+..-+...+
T Consensus 81 ~lvIWTTTPWTLPgNt----AiaVnPd~~Yv~v~~ 111 (311)
T 3pz6_A 81 YLLAATLRPETMVGQT----NCWVLPTGRYGAYYI 111 (311)
T ss_dssp EEEEEESCGGGGGGCC----EEEECTTCEEEEEEE
T ss_pred EEEEEECCchhhhhhe----EEEECCCCcEEEEEE
Confidence 4899999999999999 999999987776654
No 96
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=39.05 E-value=1.6 Score=33.31 Aligned_cols=30 Identities=10% Similarity=0.049 Sum_probs=23.3
Q ss_pred CccCCCCccEEEEeeeeeEeCchhHHHHHh
Q psy7914 329 ISWRSGARVEKRRLSQWFIRTTRLANLVSL 358 (365)
Q Consensus 329 ~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~ 358 (365)
+||+||.++.|.+.-.=.|.|..+++-+++
T Consensus 10 ~~PlCG~~L~W~eLIeQML~~en~~ei~kD 39 (95)
T 2k5c_A 10 KCPICGSPLKWEELIEEMLIIENFEEIVKD 39 (95)
T ss_dssp ECSSSCCEECHHHHHHHSTTCSTHHHHTTC
T ss_pred cCCcCCCccCHHHHHHHHHhhccHHHHHhh
Confidence 699999999988877777777777665543
No 97
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=37.53 E-value=15 Score=32.00 Aligned_cols=32 Identities=3% Similarity=0.017 Sum_probs=23.4
Q ss_pred CcceeecCCCCcccccccccc-------------------CCCccCCCCcc
Q psy7914 306 EATVNWDPIDNTVLADEQVDE-------------------QGISWRSGARV 337 (365)
Q Consensus 306 ~~~v~yc~~~~t~Ls~~eve~-------------------~~~c~~~g~~~ 337 (365)
++-.|||..|...|.+.++.. .-.|+.||..-
T Consensus 121 D~~~wyc~~c~~~~~e~~f~~~dl~~ql~~~~~~f~~~~e~rtc~~CG~~~ 171 (176)
T 1zvf_A 121 DKIRWYCSHCRQVVHESELQMLDLGTQVKEAILDFENDVEKRTCFHCKTLN 171 (176)
T ss_dssp CEEEEECTTTCCEEEEEECCSSSTTHHHHHHHHHHHTCHHHHBCTTTCCBC
T ss_pred cceEEEcCCCCCEEEEEEEEEechhHhHHHHHHHHhcChhhccCCCCCCcC
Confidence 455799999999888876531 12688999753
No 98
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=37.35 E-value=14 Score=32.19 Aligned_cols=33 Identities=6% Similarity=-0.084 Sum_probs=24.1
Q ss_pred CcceeecCCCCcccccccccc-------------------CCCccCCCCccE
Q psy7914 306 EATVNWDPIDNTVLADEQVDE-------------------QGISWRSGARVE 338 (365)
Q Consensus 306 ~~~v~yc~~~~t~Ls~~eve~-------------------~~~c~~~g~~~e 338 (365)
++-.|||..|...|.+.++.. .-.|+.||..-.
T Consensus 119 d~~~wyc~~c~~~~~e~~f~~~dl~~~l~~~~~~f~~~~~~rtc~~Cg~~~~ 170 (174)
T 1yfu_A 119 DGFEWYCDACGHLVHRVEVQLKSIVTDLPPLFESFYASEDKRRCPHCGQVHP 170 (174)
T ss_dssp EEEEEECTTTCCEEEEEEECCSCHHHHSHHHHHHHHTCHHHHBCTTTCCBCC
T ss_pred cceEEEcCCCCCEEEEEEEEEechhHhHHHHHHHHhcCHhhccCCCCCCcCC
Confidence 455799999999888876531 226899998543
No 99
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=32.35 E-value=13 Score=39.12 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=24.9
Q ss_pred hhhHHHHHhccCCCCCCCChh-HHHHHhcccc
Q psy7914 18 RAGAMDLYEGLSDPILQDWKD-IVNLQKHWIG 48 (365)
Q Consensus 18 ~~ya~~Ll~~l~~~~l~~w~~-v~~mQ~nWIG 48 (365)
.+|+++|++.+++ .. ||+ +++++.|||+
T Consensus 193 ~~~~~~l~~~~~~--~~-wp~~~~~~~~~wl~ 221 (722)
T 1rqg_A 193 QDFAERLKRWIEK--QP-WKPNVKNMVLSWIE 221 (722)
T ss_dssp GGTHHHHHHHHHS--SC-CCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CC-CCHHHHHHHHHHHH
Confidence 5799999999986 54 999 9999999995
No 100
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=29.91 E-value=23 Score=26.26 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=25.2
Q ss_pred cEEeccCCCC------CCchHHHHHHHcCCCHHHHHHHHHHHH
Q psy7914 225 NVFQPMGWDA------FGLPAENAAHQHGIDPREWTVGNIATM 261 (365)
Q Consensus 225 ~V~~~~g~Dd------~G~~I~~~A~~~g~~~~e~~~~~~~~i 261 (365)
+|+..+|+|| .+..++.++...|+++.++.++..+.+
T Consensus 21 ~vf~~~G~~C~gC~~a~~~tLeeA~~~hgiD~d~ll~eLn~~i 63 (76)
T 2k53_A 21 PIFINNGMHCLGCPSSMGESIEDACAVHGIDADKLVKELNEYF 63 (76)
T ss_dssp HHHHHTTCCCCSSCCCCCSBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCCccccccHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3444455555 247788999999999987776555544
No 101
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=26.31 E-value=74 Score=25.22 Aligned_cols=47 Identities=4% Similarity=-0.140 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCc
Q psy7914 287 KWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGAR 336 (365)
Q Consensus 287 ~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~ 336 (365)
+-+..+-+.|..+|. +=...-+-|.+|+-.+ ...+...++||.|++.
T Consensus 47 ~hLeHIaksl~r~g~--~L~v~p~~C~~CG~~F-~~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 47 EDLKVISKIAKREGM--VLLIKPAQCRKCGFVF-KAEINIPSRCPKCKSE 93 (105)
T ss_dssp HHHHHHHHHHTTTTE--EEEECCCBBTTTCCBC-CCCSSCCSSCSSSCCC
T ss_pred HHHHHHHHHHhcCCc--EEEEECcChhhCcCee-cccCCCCCCCcCCCCC
Confidence 344555555666663 2223346799999776 4455556899999985
No 102
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=26.31 E-value=69 Score=30.80 Aligned_cols=36 Identities=11% Similarity=-0.093 Sum_probs=22.9
Q ss_pred eeecCCCCccccccccc---------cCCCccCCCCccEEEEeeeee
Q psy7914 309 VNWDPIDNTVLADEQVD---------EQGISWRSGARVEKRRLSQWF 346 (365)
Q Consensus 309 v~yc~~~~t~Ls~~eve---------~~~~c~~~g~~~e~~~~~~~f 346 (365)
.+.|..|+...+..++. .-|+|+.||..+ |+--.||
T Consensus 144 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~P~Cp~Cgg~l--rP~VV~F 188 (361)
T 1q14_A 144 HCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELV--KPAIVFF 188 (361)
T ss_dssp EEEETTTCCEECTHHHHHHTTSSSCSCCCBCTTTCCBE--EEEECCB
T ss_pred ccCcCCCCccCcHHHHHHHHhhcccCCCCCCcCCCCEe--CCCcccc
Confidence 46799998765543321 127999999865 4444444
No 103
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=25.53 E-value=27 Score=25.59 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=23.6
Q ss_pred EEeccCCC---CCC---chHHHHHHHcCCCHHHHHHHHHHHH
Q psy7914 226 VFQPMGWD---AFG---LPAENAAHQHGIDPREWTVGNIATM 261 (365)
Q Consensus 226 V~~~~g~D---d~G---~~I~~~A~~~g~~~~e~~~~~~~~i 261 (365)
|+..+|+| |.| ..++.++...|+++.++.++..+.+
T Consensus 24 vf~~~G~~c~~C~~a~~~tL~~Aa~~~gid~~~ll~~Ln~~~ 65 (73)
T 2k5e_A 24 VLRSYNLGCIGCMGAQNESLEQGANAHGLNVEDILRDLNALA 65 (73)
T ss_dssp HHHHTTGGGGGTTTGGGSBHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCCccccccHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33445555 343 6678888899999987766555443
No 104
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.92 E-value=2.7e+02 Score=22.60 Aligned_cols=48 Identities=13% Similarity=0.141 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHCCCEEEe---CcceeecCCCCccccccccccCCCccCCCCccEE
Q psy7914 286 YKWTQALFLDLYHAGLVYRK---EATVNWDPIDNTVLADEQVDEQGISWRSGARVEK 339 (365)
Q Consensus 286 ~~~v~~~f~~L~~kG~Iy~~---~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~ 339 (365)
...|-+.++.|.+.|+|.+- ++...|...... -. ..-+|..||...+.
T Consensus 52 ~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~~~~-~H-----~HliC~~Cg~v~~~ 102 (150)
T 2w57_A 52 LATVYRVLNQFDDAGIVTRHHFEGGKSVFELSTQH-HH-----DHLVCLDCGEVIEF 102 (150)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECGGGCEEEEECCSS-CC-----EEEEETTTCCEEEE
T ss_pred HHHHHHHHHHHHHCCcEEEEEeCCCceEEEecCCC-ce-----eEEEECCCCCEEEe
Confidence 35677889999999999875 345667642111 01 12369999998775
No 105
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=22.36 E-value=73 Score=29.85 Aligned_cols=35 Identities=26% Similarity=0.273 Sum_probs=23.9
Q ss_pred CceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEecc
Q psy7914 186 DNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPM 230 (365)
Q Consensus 186 ~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~ 230 (365)
++++|..+ =|| ||...++ .+++.|+.+|++|.++.
T Consensus 3 ~~i~i~~G---GTg----GHi~pal---ala~~L~~~g~~V~~vg 37 (365)
T 3s2u_A 3 GNVLIMAG---GTG----GHVFPAL---ACAREFQARGYAVHWLG 37 (365)
T ss_dssp CEEEEECC---SSH----HHHHHHH---HHHHHHHHTTCEEEEEE
T ss_pred CcEEEEcC---CCH----HHHHHHH---HHHHHHHhCCCEEEEEE
Confidence 35665543 245 9987644 36667788999999985
No 106
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=22.06 E-value=2.8e+02 Score=22.11 Aligned_cols=49 Identities=16% Similarity=0.036 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHCCCEEEe---CcceeecCCCCccccccccccCCCccCCCCccEE
Q psy7914 286 YKWTQALFLDLYHAGLVYRK---EATVNWDPIDNTVLADEQVDEQGISWRSGARVEK 339 (365)
Q Consensus 286 ~~~v~~~f~~L~~kG~Iy~~---~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~ 339 (365)
...|-+.++.|.+.|+|.+- ++...|.......-. ..-.|..||...+.
T Consensus 48 ~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~~~~~~~~H-----~HliC~~Cg~v~~~ 99 (139)
T 3mwm_A 48 LTTVYRTLQSLADAGEVDVLRTAEGESVYRRCSTGDHH-----HHLVCRACGKAVEV 99 (139)
T ss_dssp HHHHHHHHHHHHHTTSSEEEECTTSCEEEECCSCSSCC-----EEEEETTTCCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCceEEEECCCCCCc-----cEEEECCCCCEeec
Confidence 45677889999999999874 335667643211001 12358899988775
No 107
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.16 E-value=2.8e+02 Score=21.81 Aligned_cols=48 Identities=10% Similarity=0.079 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHCCCEEEe---CcceeecCCCCccccccccccCCCccCCCCccEE
Q psy7914 286 YKWTQALFLDLYHAGLVYRK---EATVNWDPIDNTVLADEQVDEQGISWRSGARVEK 339 (365)
Q Consensus 286 ~~~v~~~f~~L~~kG~Iy~~---~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~ 339 (365)
...|-+.++.|.+.|+|.+- ++...|+.... .-. ..-.|..||...+.
T Consensus 45 ~~TVYR~L~~L~e~Glv~~~~~~~~~~~y~~~~~-~~h-----~HliC~~Cg~v~~~ 95 (131)
T 2o03_A 45 LTTVYRTLQSMASSGLVDTLHTDTGESVYRRCSE-HHH-----HHLVCRSCGSTIEV 95 (131)
T ss_dssp HHHHHHHHHHHHTTTSEEEEECTTSCEEEEECCS-SSC-----EEEEETTTCCEEEE
T ss_pred HhhHHHHHHHHHHCCCEEEEEeCCCceEEEeCCC-CCC-----CEEEeCCCCCEEEE
Confidence 45677899999999999874 34566764211 001 12358889988775
No 108
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=20.98 E-value=1.1e+02 Score=25.17 Aligned_cols=43 Identities=7% Similarity=-0.006 Sum_probs=27.3
Q ss_pred HHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCc-cEEEE
Q psy7914 289 TQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGAR-VEKRR 341 (365)
Q Consensus 289 v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~-~e~~~ 341 (365)
..++|+.|.+..++..+ |.+|++....... .|+.||+. .++++
T Consensus 33 ~~~F~~~l~~grL~~~r------C~~CG~~~~PPr~----~Cp~C~s~~~~~ve 76 (145)
T 3irb_A 33 GEQFFNGLKQNKIIGSK------CSKCGRIFVPARS----YCEHCFVKIENYVE 76 (145)
T ss_dssp HHHHHHHHHTTCCEEEE------CTTTCCEEESCCS----EETTTTEECCEEEE
T ss_pred HHHHHHHHHcCeEEEEE------eCCCCcEEcCchh----hCcCCCCCceeeee
Confidence 46788888876666554 8888875443322 37777773 45554
Done!