RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7914
(365 letters)
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 342 bits (879), Expect = e-110
Identities = 94/163 (57%), Positives = 114/163 (69%), Gaps = 1/163 (0%)
Query: 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHG 247
+Y LSM PYPSG LHMGHVR YTI D +ARY M GKNV QP+GWDAFGLPAE AA ++
Sbjct: 55 YYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNN 114
Query: 248 IDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEA 307
P WT NIA MK+QL+ G ++W ELATC P+YY+W Q F +LY GLVY+K +
Sbjct: 115 TAPAPWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTS 174
Query: 308 TVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTT 350
VNW P D TVLA+EQV G WR +VE++ + QWFI+ T
Sbjct: 175 AVNWCPNDQTVLANEQV-IDGCCWRCDTKVERKEIPQWFIKIT 216
Score = 32.9 bits (76), Expect = 0.20
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 21 AMDLYEGLSDPILQDWKDIV-NLQKHWIGEPNGVRFEFQI 59
A +L L L W D V +Q++WIG GV F +
Sbjct: 219 ADELLNDLDK--LDHWPDTVKTMQRNWIGRSEGVEITFNV 256
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Length = 878
Score = 330 bits (848), Expect = e-106
Identities = 86/174 (49%), Positives = 111/174 (63%), Gaps = 2/174 (1%)
Query: 178 TLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGL 237
+ YVL MFPYPSG LHMGH++ YT+ D LAR+ M G V PMGWDAFGL
Sbjct: 25 AKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGL 84
Query: 238 PAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLY 297
PAENAA + G+ P++WT NI K L+ G ++W+ E+ TC+P+YY+W Q +FL ++
Sbjct: 85 PAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMW 144
Query: 298 HAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWR-SGARVEKRRLSQWFIRTT 350
GL YR + VNW P TVLA+EQV +G WR VEKR L QW++R T
Sbjct: 145 EKGLAYRAKGLVNWCPKCQTVLANEQV-VEGRCWRHEDTPVEKRELEQWYLRIT 197
Score = 29.1 bits (66), Expect = 2.7
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 21 AMDLYEGLSDPILQDWKDIV-NLQKHWIGEPNGVRFEFQI 59
A L + L +W + V +Q+ WIG G F +
Sbjct: 200 AERLLKDLEGL---NWPEKVKAMQRAWIGRSEGAEILFPV 236
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 210 bits (536), Expect = 1e-61
Identities = 50/198 (25%), Positives = 66/198 (33%), Gaps = 33/198 (16%)
Query: 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ-- 245
FY+ FPY SG LH+GH R YTI D +AR+ M G NV PM W G P A +
Sbjct: 36 FYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIK 95
Query: 246 ----------------------HGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCD- 282
DP + K G +W E T
Sbjct: 96 NRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSL 155
Query: 283 -PKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRR 341
P + K+ + F L G + + V WDP+ T L D + G V
Sbjct: 156 FPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDL-------MEGEDVPILD 208
Query: 342 LSQWFIRTTRLANLVSLV 359
++ L
Sbjct: 209 YIIIKFELRENGEVIYLP 226
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 202 bits (515), Expect = 2e-58
Identities = 50/198 (25%), Positives = 66/198 (33%), Gaps = 33/198 (16%)
Query: 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ-- 245
FY+ FPY SG LH+GH R YTI D +AR+ M G NV PM W G P A +
Sbjct: 36 FYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIK 95
Query: 246 ----------------------HGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCD- 282
DP + K G +W E T
Sbjct: 96 NRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSL 155
Query: 283 -PKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRR 341
P + K+ + F L G + + V WDP+ T L D + G V
Sbjct: 156 FPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDL-------MEGEDVPILD 208
Query: 342 LSQWFIRTTRLANLVSLV 359
++ L
Sbjct: 209 YIIIKFELRENGEVIYLP 226
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 87.1 bits (216), Expect = 7e-19
Identities = 39/140 (27%), Positives = 55/140 (39%), Gaps = 5/140 (3%)
Query: 187 NFYVLSMFPYPSGSLHMGHVRVYTIS-DTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ 245
+ V S PY +G +H GH+ + D RY + G++V G D G P A +
Sbjct: 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK 62
Query: 246 HGIDPREWTVGNIATMKSQLQGFGCKF-NWESELATCDPKYYKWTQALFLDLYHAGLVYR 304
G PRE +K Q F + T P +YK +Q FL Y G + +
Sbjct: 63 EGRSPREIVDEFHEQIKITFQRAKISFDFFGR---TELPIHYKLSQEFFLKAYENGHLVK 119
Query: 305 KEATVNWDPIDNTVLADEQV 324
K + D L D V
Sbjct: 120 KVTKQAYCEHDKMFLPDRFV 139
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs,
parasite, protein-IN complex, translation, nucleotide
binding; HET: C13; 2.55A {Trypanosoma brucei}
Length = 542
Score = 81.6 bits (201), Expect = 4e-17
Identities = 38/180 (21%), Positives = 68/180 (37%), Gaps = 14/180 (7%)
Query: 185 EDNFYVLSMFPYPSGSLHMGHVRVYT--ISDTLARYYAMNGKNVFQPMGWDAFGLPAENA 242
E F+V S Y + + H+GH VY+ I+D + RY+ + G+ VF G D G A
Sbjct: 8 EKVFFVTSPIYYVNAAPHIGH--VYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEA 65
Query: 243 AHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLV 302
A Q + P ++T K + + + T + ++ + L+ L G +
Sbjct: 66 AKQKQVSPYDFTTAVAGEFKKXFEQMDYSID--YFIRTTNEQHKAVVKELWTKLEQKGDI 123
Query: 303 YRKEATVNWDPIDNTVLADEQVDE--------QGISWRSGARVEKRRLSQWFIRTTRLAN 354
Y + D + L + + + +S SG V + R +
Sbjct: 124 YLGRYEGWYSISDESFLTPQNITDGVDKDGNPCKVSLESGHVVTWVSEENYMFRLSAFRE 183
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA
synthetase, ATP-binding, ligas binding,
nucleotide-binding, protein biosynthesis; HET: CIT;
1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A
3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A*
1pg2_A* 1qqt_A 1mea_A 1med_A
Length = 560
Score = 80.7 bits (200), Expect = 9e-17
Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 4/136 (2%)
Query: 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH 246
V PY +GS+H+GH+ + +D RY M G V DA G P A Q
Sbjct: 19 KILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 78
Query: 247 GIDPREWTVGNIATMKSQLQGFGCKF-NWESELATCDPKYYKWTQALFLDLYHAGLVYRK 305
GI P + ++ GF + N+ S T + + ++ ++ L G + +
Sbjct: 79 GITPEQMIGEMSQEHQTDFAGFNISYDNYHS---THSEENRQLSELIYSRLKENGFIKNR 135
Query: 306 EATVNWDPIDNTVLAD 321
+ +DP L D
Sbjct: 136 TISQLYDPEKGMFLPD 151
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 79.1 bits (196), Expect = 4e-16
Identities = 46/151 (30%), Positives = 60/151 (39%), Gaps = 23/151 (15%)
Query: 199 GSLHMGHVRVYTISDTLARYYAMNGKNV-FQPMGWDAFGLPA-----ENAAHQHGIDPR- 251
GSLHMGH ++ D L RY M G + P G D G+ A E + G
Sbjct: 47 GSLHMGHALDNSLQDALIRYKRMRGFEAVWLP-GTDHAGI-ATQVVVERLLLKEGKTRHD 104
Query: 252 -----------EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAG 300
+W + T+ QL+ G +W E T D K + + F YH G
Sbjct: 105 LGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEG 164
Query: 301 LVYRKEATVNWDPIDNTVLADEQV---DEQG 328
L YR VNW P T L+D +V G
Sbjct: 165 LAYRAPRLVNWCPRCETTLSDLEVETEPTPG 195
Score = 27.9 bits (63), Expect = 7.5
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 15/59 (25%)
Query: 295 DLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLA 353
AG + ++E + R G +E QW++R LA
Sbjct: 324 LFREAGHLVKEE------DYTIAL---------ATCSRCGTPIEYAIFPQWWLRMRPLA 367
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
PDB: 2ct8_A*
Length = 497
Score = 73.8 bits (182), Expect = 1e-14
Identities = 43/170 (25%), Positives = 68/170 (40%), Gaps = 15/170 (8%)
Query: 186 DNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ 245
FYV + Y + H+GH +DT+ARYY + +VF G D GL + A +
Sbjct: 5 KKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEE 64
Query: 246 HGIDPREWTVGNIATMKSQLQGFGC---KFNWESELATCDPKYYKWTQALFLDLYHAGLV 302
GI P+E N K + KF + T DP + K+ Q +F + Y G +
Sbjct: 65 LGISPKELVDRNAERFKKLWEFLKIEYTKF-----IRTTDPYHVKFVQKVFEECYKRGDI 119
Query: 303 YRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKR-------RLSQW 345
Y E + ++ ++ E + E RLS++
Sbjct: 120 YLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPSYFFRLSKY 169
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase,
structural genomics, NPPSFA; 1.80A {Thermus
thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A
2d54_A
Length = 500
Score = 71.9 bits (177), Expect = 5e-14
Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 12/127 (9%)
Query: 185 EDNFYVLSMFPYPSGSLHMGHVRVYT--ISDTLARYYAMNGKNVFQPMGWDAFGLPAENA 242
E FYV + Y + H+GH YT ++D LAR++ ++G F G D G A
Sbjct: 2 EKVFYVTTPIYYVNAEPHLGH--AYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRA 59
Query: 243 AHQHGIDPREWTVGNIATMKSQLQGFGC---KFNWESELATCDPKYYKWTQALFLDLYHA 299
A G DP+ + K G F + T + ++ K Q + +Y A
Sbjct: 60 AQAAGEDPKAFVDRVSGRFKRAWDLLGIAYDDF-----IRTTEERHKKVVQLVLKKVYEA 114
Query: 300 GLVYRKE 306
G +Y E
Sbjct: 115 GDIYYGE 121
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class
IA:methionyl-tRNA...; structural genomics; 2.65A
{Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Length = 536
Score = 71.9 bits (177), Expect = 6e-14
Identities = 30/127 (23%), Positives = 60/127 (47%), Gaps = 12/127 (9%)
Query: 185 EDNFYVLSMFPYPSGSLHMGHVRVYT--ISDTLARYYAMNGKNVFQPMGWDAFGLPAENA 242
+ +Y+ + YP+G H+GH Y +D +AR+ +NG +V+ G D G+ +
Sbjct: 24 REKYYITTAIAYPNGKPHIGH--AYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQS 81
Query: 243 AHQHGIDPREWTVGNIATMKSQLQGFGC---KFNWESELATCDPKYYKWTQALFLDLYHA 299
A + GI PR+ N + + + + + T + ++YK +QA++ +
Sbjct: 82 ARKEGITPRDLADRNTSAFRRMAEVLNSSNDDY-----IRTSEERHYKASQAIWQAMVAN 136
Query: 300 GLVYRKE 306
G +Y+
Sbjct: 137 GDIYKGG 143
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein
biosynthesis, ligase, aminoacyl- synthetase; HET: ADN
CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Length = 524
Score = 71.1 bits (175), Expect = 1e-13
Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 12/134 (8%)
Query: 178 TLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYT--ISDTLARYYAMNGKNVFQPMGWDAF 235
+ FY+ + YP+G H+GH Y +D +AR+ ++G +V G D
Sbjct: 4 HHHHHGGSEPFYITTAIAYPNGVPHIGH--AYEYIATDAIARFKRLDGYDVRYLTGTDVH 61
Query: 236 GLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC---KFNWESELATCDPKYYKWTQAL 292
G A + GI E N + + +F + T D +Y+ ++A+
Sbjct: 62 GQKMAETAAKEGIPAAELARRNSDVFQRLQEKLNISFDRF-----IRTSDADHYEASKAI 116
Query: 293 FLDLYHAGLVYRKE 306
+ + AG +Y
Sbjct: 117 WKRMADAGDIYLDA 130
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase,
tRNA ligase metrs, methionine, translation, ATP-binding;
HET: ME8; 2.00A {Leishmania major}
Length = 564
Score = 68.9 bits (169), Expect = 6e-13
Identities = 43/183 (23%), Positives = 70/183 (38%), Gaps = 27/183 (14%)
Query: 183 RREDNFYVLSMFPYPSGSLHMGHVRVYT--ISDTLARYYAMNGKNVFQPMGWDAFGLPAE 240
+++ F+ + Y + S H+GH VY+ I D L RY+ + G+ VF G D G
Sbjct: 23 KKQKVFFATTPIYYVNASPHIGH--VYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVA 80
Query: 241 NAAHQHGIDPREWTVGNIATMKSQLQGFGC---KFNWESELATCDPKYYKWTQALFLDLY 297
AA + G+ P ++T + K Q F + T +P + K Q ++ L
Sbjct: 81 EAAAKQGVSPMDFTTSVSSEFKQCFQEMNYDMNYF-----IRTTNPTHEKLVQDIWKKLA 135
Query: 298 HAGLVYRKEAT----VN----WDPIDNTVLADEQVDEQGISWRSGARVEKR-------RL 342
G +Y + V+ + D +S SG V RL
Sbjct: 136 AKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRL 195
Query: 343 SQW 345
S +
Sbjct: 196 SAF 198
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Length = 821
Score = 67.6 bits (166), Expect = 2e-12
Identities = 36/147 (24%), Positives = 54/147 (36%), Gaps = 23/147 (15%)
Query: 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAA----------- 243
P +G H+GH + + D RY M G + GWD GLP E
Sbjct: 47 PTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKRE 106
Query: 244 -HQHGIDP-----REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYK---WTQALFL 294
+GI+ RE ++ + + E AT +P Y + W
Sbjct: 107 IEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWW---SLK 163
Query: 295 DLYHAGLVYRKEATVNWDPIDNTVLAD 321
+L+ GL+YR V + P T L+
Sbjct: 164 NLFDRGLLYRDHKVVPYCPRCGTPLSS 190
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 57.6 bits (140), Expect = 3e-09
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 14/140 (10%)
Query: 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNV-FQPMGWDAFGLPAENAAHQHGIDP--- 250
PY +G+LHMGH + D + RY M G + P GWD GLP E A + G+D
Sbjct: 57 PYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVP-GWDTHGLPIEQALTKKGVDRKKM 115
Query: 251 ---------REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGL 301
+E+ + I K + G + ++ T P+Y +F ++ GL
Sbjct: 116 STAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGL 175
Query: 302 VYRKEATVNWDPIDNTVLAD 321
+Y+ + V W P + LA+
Sbjct: 176 IYKGKKPVYWSPSSESSLAE 195
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.020
Identities = 35/229 (15%), Positives = 67/229 (29%), Gaps = 73/229 (31%)
Query: 54 RFEFQ-ILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHILASKTKEKL 112
+ +F ILP+P T A + P E V K G Y++ + + L
Sbjct: 34 QEQFNKILPEP--TEGFAADDE------PTTPAELVGKFLG-YVSSLVEPSKVGQFDQVL 84
Query: 113 TENVKHQIENKY------KSIVSSDPMLRDRKKPVCGESLNQVLKLVCDGVYRRRRSISS 166
+ EN Y ++ + +L++ + +++K R
Sbjct: 85 NLCLTE-FENCYLEGNDIHALAAK--LLQENDTTL--VKTKELIK----NYITARIMAKR 135
Query: 167 PSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTI------SDT----LA 216
P D +S ++F ++ G+ ++ I +D L
Sbjct: 136 PFDKKSNS-----------------ALFR----AVGEGNAQLVAIFGGQGNTDDYFEELR 174
Query: 217 RYYAMNGKNVFQPMGWDAFGLPAE------------NAAHQHGIDPREW 253
Y + + D AE G++ EW
Sbjct: 175 DLY-----QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Score = 35.0 bits (80), Expect = 0.049
Identities = 69/414 (16%), Positives = 112/414 (27%), Gaps = 160/414 (38%)
Query: 23 DLYEGLSDPILQDW------------KDIVNLQKHWIGEPNGVRFEFQILPQPEGTSNSA 70
DLY+ ++ D + ++ +K + G+ + L P +
Sbjct: 175 DLYQ-TYHVLVGDLIKFSAETLSELIRTTLDAEKVF---TQGLNIL-EWLENPS----NT 225
Query: 71 PTADTLS---IWLPEDTI--------EDVAKSQG----------QYITVKSSHILA---- 105
P D L I P I AK G + T S ++
Sbjct: 226 PDKDYLLSIPISCP--LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI 283
Query: 106 --SKTKEKLTENVKHQIENKY----------------KSIVSSD---------PMLRDRK 138
+ + E +V+ I + SI+ PML
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS--- 340
Query: 139 KPVCGESLNQVLKLVCDGVYRRRRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPS 198
+ + QV V + + + +S V G N V+S P
Sbjct: 341 --ISNLTQEQVQDY----VNKTNSHLPAGKQVEISLVNGA-------KNL-VVSGPP--- 383
Query: 199 GSLHMGHVRVYTISDTLARYYAMNGKNVFQ---------PMGWDAFGLPAENAA--HQHG 247
SL Y ++ TL + A +G + Q + F LP A+ H H
Sbjct: 384 QSL-------YGLNLTLRKAKAPSGLD--QSRIPFSERKLKFSNRF-LPV--ASPFHSHL 431
Query: 248 IDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDL--YHAGLVYR- 304
+ P + L FN ++ P Y + + DL + R
Sbjct: 432 LVPAS------DLINKDLVKNNVSFN-AKDIQI--PVYDTFDGS---DLRVLSGSISERI 479
Query: 305 ----KEATVNWDPIDNT-----------------VLADEQVDEQGISWRSGARV 337
V W+ VL D G +G RV
Sbjct: 480 VDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKD--G----TGVRV 527
Score = 29.2 bits (65), Expect = 2.4
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 12/52 (23%)
Query: 10 GEDIKSSGRAGAMDLYEGLSDPILQ---DWKDIVNLQKHWI-----GEPNGV 53
G D+ R + + E + D I++ W+ + I G +G+
Sbjct: 465 GSDL----RVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGL 512
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase, nucleotide-binding, protein
biosynthesis, ligase/RNA complex; HET: ANP; 2.00A
{Pyrococcus horikoshii} PDB: 2zuf_A
Length = 629
Score = 35.1 bits (81), Expect = 0.036
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 197 PSGSLHMGHVRVYTISDTLARYYAMNGKNV 226
P+ LHMGH R + D +AR G V
Sbjct: 130 PTKPLHMGHARNAILGDVMARILRFLGYEV 159
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA
inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA
synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium
smegmatis}
Length = 414
Score = 34.9 bits (81), Expect = 0.037
Identities = 19/92 (20%), Positives = 28/92 (30%), Gaps = 20/92 (21%)
Query: 189 YVLSMFPYPSGSLHMGHVRVYTISDTLARY---------YAMNGKNVFQPMGWDAFGLPA 239
YV + PY + H+GH Y D + R Y N +V P+
Sbjct: 43 YVCGITPY--DATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPL--------- 91
Query: 240 ENAAHQHGIDPREWTVGNIATMKSQLQGFGCK 271
A + GID R + +
Sbjct: 92 FERAERDGIDWRTLGDRETQLFREDMAALRVL 123
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics
initiative, RSGI, structural genomics, ligase; 2.30A
{Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Length = 592
Score = 33.9 bits (78), Expect = 0.077
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 197 PSGSLHMGHVRVYTISDTLARYYAMNGKNV 226
P+ LH+GH+R + D +AR A G+ V
Sbjct: 114 PNKELHVGHLRNIALGDAIARILAYAGREV 143
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc
genomics, protein structure initiative; 2.20A
{Campylobacter jejuni}
Length = 464
Score = 33.3 bits (77), Expect = 0.11
Identities = 28/157 (17%), Positives = 44/157 (28%), Gaps = 52/157 (33%)
Query: 197 PSGSLHMGHVRVYTISDTLARYYAMNGKNV------------------------FQPMGW 232
P+G LH+GH R DTL R G + +
Sbjct: 41 PTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILH 100
Query: 233 DAFGLP------------AENAAHQHGIDP---------REWTVGNI-ATMKSQLQGFGC 270
+ P A+ A + G + +W + +K L+
Sbjct: 101 ENVEYPEQYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKI 160
Query: 271 KF-NWESELATCDPKYYKWTQALFLDLYHAGLVYRKE 306
K ++ SE YY A L +Y +E
Sbjct: 161 KIDSYVSE-----RSYYDALNATLESLKEHKGIYEQE 192
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 553
Score = 33.4 bits (77), Expect = 0.13
Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 13/125 (10%)
Query: 109 KEKLTENVKHQIENKYKSIVS----SDPMLRDRKK---PVCGESLNQVLKLVCDGVYRRR 161
+ L VKH+ +++ ++P LR ++ +V L + +
Sbjct: 10 RYALLNAVKHRGRANPGAVMGAVMSNEPELRKMAPQVKEAVEAAVERVNSLSPEEQQQEM 69
Query: 162 RSISSPSDFGVSSVGGTL-EGKRREDNFYVLSMF-PYPSGSLHMGHVRVYTISDTLARYY 219
+ L E + V+ F P PSG LH+GH R ++ AR Y
Sbjct: 70 ERLGLEITERKQKKRKGLRELAGVKGE--VVLRFAPNPSGPLHIGHARAAILNHEYARKY 127
Query: 220 AMNGK 224
+G+
Sbjct: 128 --DGR 130
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann
fold, crystallography, X-RAY, P. horikoshii,
aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus
horikoshii}
Length = 392
Score = 31.2 bits (71), Expect = 0.56
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 15/75 (20%)
Query: 131 DPMLRDRKKPVCGESLNQVLKLVCDGVYRRRRSISSPSDFGVSSVGGTLEGKRREDNFYV 190
L ++ + L RR+ S D+ + L+ F++
Sbjct: 31 TEDLLEKTAELTKSELPIFF---------RRKFFFSHRDYDL-----ILKDYEEGRGFFL 76
Query: 191 LSMFPYPSGSLHMGH 205
+ PSG +H+GH
Sbjct: 77 YTGR-GPSGPMHIGH 90
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, LYME
disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Length = 501
Score = 30.7 bits (70), Expect = 0.79
Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 16/83 (19%)
Query: 202 HMGHVRVYTISDTLARY---------YAMNGKNVFQPMGWDAFGLPAE----NAAHQHGI 248
H+G+ R Y D L + YAMN ++ G G E A + G+
Sbjct: 57 HIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDG---EDKVAKTAREKGL 113
Query: 249 DPREWTVGNIATMKSQLQGFGCK 271
E + + +
Sbjct: 114 TVYEISEFFTEAFFNDCRKLNIV 136
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET:
PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A
{Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1
d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Length = 607
Score = 30.0 bits (68), Expect = 1.2
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 201 LHMGHVRVYTISDTLARYYAMNGKNV 226
H GH+R I LA Y G V
Sbjct: 158 FHAGHLRSTIIGGFLANLYEKLGWEV 183
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine,
E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1
c.26.1.1 PDB: 1li7_A 1u0b_B
Length = 461
Score = 30.2 bits (69), Expect = 1.3
Identities = 16/84 (19%), Positives = 23/84 (27%), Gaps = 28/84 (33%)
Query: 202 HMGHVRVYTISDTLARY---------YAMN-----GKNVFQPMGWDAFGLPAENAAHQHG 247
H+GH R + D +ARY Y N K + A+++G
Sbjct: 37 HIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKII--------------KRANENG 82
Query: 248 IDPREWTVGNIATMKSQLQGFGCK 271
IA M
Sbjct: 83 ESFVAMVDRMIAEMHKDFDALNIL 106
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A
{Escherichia coli} PDB: 2ajh_A 2aji_A
Length = 196
Score = 29.4 bits (67), Expect = 1.3
Identities = 4/17 (23%), Positives = 5/17 (29%)
Query: 43 QKHWIGEPNGVRFEFQI 59
H GV F +
Sbjct: 3 HHHHHAMGEGVEITFNV 19
>1b25_A Protein (formaldehyde ferredoxin oxidoreductase); MOCO,
tungstoenzyme, tungsten containing protein, hypertherm
oxidoreductase; HET: PTT; 1.85A {Pyrococcus furiosus}
SCOP: a.110.1.1 d.152.1.1 PDB: 1b4n_A*
Length = 619
Score = 29.7 bits (66), Expect = 1.6
Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 10/71 (14%)
Query: 181 GKRREDNFYVLSMF--PYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLP 238
R+ ++ F SG H+ + L+ YY + GWD G+P
Sbjct: 544 KWDRKMDYPPKRWFTEGLKSGPHKGEHLDEKKYDELLSEYYRI--------RGWDERGIP 595
Query: 239 AENAAHQHGID 249
+ + +D
Sbjct: 596 KKETLKELDLD 606
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure,
rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus
horikoshii} SCOP: a.97.1.2 c.26.1.1
Length = 523
Score = 29.8 bits (66), Expect = 1.7
Identities = 14/57 (24%), Positives = 23/57 (40%)
Query: 179 LEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAF 235
+ +R E YV+ PSG +H+G+ R + + G V WD +
Sbjct: 12 IIRERGEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDY 68
>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 3.00A
{Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1
Length = 401
Score = 29.0 bits (66), Expect = 2.2
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 18/69 (26%)
Query: 189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAF-----GLPAENAA 243
Y + P P G++ +Y DT + +N P + G AEN A
Sbjct: 124 YAV---PKPERGFPTGNLVMY---DTTLGWRFVN------PKMQALYGTESMGETAENLA 171
Query: 244 HQHGIDPRE 252
+GI RE
Sbjct: 172 EMYGIR-RE 179
>2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION,
chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology;
HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A*
2ibu_A* 2ibw_A* 2iby_A* 2f2s_A*
Length = 395
Score = 28.2 bits (64), Expect = 4.0
Identities = 17/70 (24%), Positives = 22/70 (31%), Gaps = 26/70 (37%)
Query: 192 SMFPY--PSGSLHMGHVRVY--TISDTLARYYAMNGKNVFQPMGWDAF-----GLPAENA 242
S PY GS G V++ + D L D + G AEN
Sbjct: 125 SNVPYVMNRGSTPYGGVKLEDLIVKDGL----------------TDVYNKIHMGSCAENT 168
Query: 243 AHQHGIDPRE 252
A + I R
Sbjct: 169 AKKLNIA-RN 177
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A
{Coxiella burnetii}
Length = 462
Score = 28.3 bits (64), Expect = 4.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 202 HMGHVRVYTISDTLARY 218
H+GH R + I D + RY
Sbjct: 40 HIGHGRSWIIFDMVVRY 56
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 27.7 bits (61), Expect = 7.0
Identities = 8/78 (10%), Positives = 20/78 (25%), Gaps = 15/78 (19%)
Query: 131 DPMLRDRKKPVCGESLNQVLKLVCDGVYRRRRSISSPSDFGVSSVGGTLEGKRREDNFYV 190
P R + + G++ + L R + L+ + ++
Sbjct: 40 TPQQIQRIEKLSGKAPHHYL---------SRGVFLAEKSLDK-----FLDDVEAKKPTFI 85
Query: 191 LSMFPYPSGSLHMGHVRV 208
YP + +
Sbjct: 86 FIQK-YPQKEVALEEYIT 102
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 128
Score = 26.5 bits (58), Expect = 7.4
Identities = 11/67 (16%), Positives = 16/67 (23%), Gaps = 5/67 (7%)
Query: 55 FEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHILASKTKEKLTE 114
F I E N TL E + + S L + +
Sbjct: 38 PSFTITVTSEAGENDETVQTTLKFTYSEK-----YPDEAPLYEIFSQENLEDNDVSDILK 92
Query: 115 NVKHQIE 121
+ Q E
Sbjct: 93 LLALQAE 99
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain,
chromatin, remodeler, RSC, acetylation, transcription,
chromatin regulator, nucleus, phosphorylation; HET: ALY;
1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Length = 311
Score = 27.3 bits (60), Expect = 8.3
Identities = 4/45 (8%), Positives = 10/45 (22%)
Query: 123 KYKSIVSSDPMLRDRKKPVCGESLNQVLKLVCDGVYRRRRSISSP 167
+P N+ + D + + + I
Sbjct: 6 TVDYNAPLNPKSELFLDDWHIPKFNRFISFTLDVLIDKYKDIFKD 50
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET:
FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A*
2e77_A* 2j6x_A*
Length = 368
Score = 27.5 bits (62), Expect = 8.4
Identities = 5/35 (14%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 12 DIKSSGRAGAMDLYEGLSDPILQDWKDIVNLQKHW 46
++ + +++ G S + +DI + H
Sbjct: 195 YLRGTAEGMSLNNIYGASKQKI-SPRDIEEIAGHS 228
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 9.3
Identities = 39/294 (13%), Positives = 85/294 (28%), Gaps = 89/294 (30%)
Query: 32 ILQD-W-KDIVNLQKHWIGEPNGVRFEF--QILPQPEGTSNSAPTADTLSIWLPED-TIE 86
+L + N F +IL T+ D LS +++
Sbjct: 249 VLLNVQNAKAWNA------------FNLSCKILL----TTRFKQVTDFLSAATTTHISLD 292
Query: 87 DVAKSQGQYITVKSSHILASKTKEKLTENVKHQIENKYKSIVSSDPMLRDRKKPVCGESL 146
+ + + +L + + + ++ ++++P + ES+
Sbjct: 293 HHSMT---LTPDEVKSLLLKYLDCRPQD-LPREV-------LTTNPRRLS----IIAESI 337
Query: 147 -------NQVLKLVCDGVYRRRRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPY--- 196
+ + CD + I S S+ LE F LS+FP
Sbjct: 338 RDGLATWDNWKHVNCD---KLTTIIES-------SLN-VLEPAEYRKMFDRLSVFPPSAH 386
Query: 197 -PSGSL-----HMGHVRVYTISDTLARYYAMNGKN----VFQPMGWDAFGLPAEN--AAH 244
P+ L + V + + L +Y + + + P + + EN A H
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 245 QHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYH 298
+ +D F+ + + +Y+ + +H
Sbjct: 447 RSIVDHYN---------------IPKTFDSDDLIPPYLDQYFYS----HIG-HH 480
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase,
ligase, structural G medical structural genomics of
pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi}
PDB: 3hrk_A* 3hri_A
Length = 456
Score = 27.2 bits (61), Expect = 9.7
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 214 TLARYYAMNGKNVFQPMGW 232
+LAR G+++ P W
Sbjct: 108 SLARLLLGKGRSLLLPAKW 126
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.403
Gapped
Lambda K H
0.267 0.0487 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,663,892
Number of extensions: 334044
Number of successful extensions: 833
Number of sequences better than 10.0: 1
Number of HSP's gapped: 816
Number of HSP's successfully gapped: 50
Length of query: 365
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 270
Effective length of database: 4,049,298
Effective search space: 1093310460
Effective search space used: 1093310460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.7 bits)