RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7914
(365 letters)
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 169 bits (428), Expect = 7e-49
Identities = 85/177 (48%), Positives = 109/177 (61%)
Query: 178 TLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGL 237
+ YVL MFPYPSG LHMGH++ YT+ D LAR+ M G V PMGWDAFGL
Sbjct: 25 AKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGL 84
Query: 238 PAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLY 297
PAENAA + G+ P++WT NI K L+ G ++W+ E+ TC+P+YY+W Q +FL ++
Sbjct: 85 PAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMW 144
Query: 298 HAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLAN 354
GL YR + VNW P TVLA+EQV E VEKR L QW++R T A
Sbjct: 145 EKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAE 201
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 155 bits (393), Expect = 5e-45
Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 9/168 (5%)
Query: 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH 246
V PY +GS+H+GH+ + +D RY M G V DA G P A Q
Sbjct: 3 KILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 62
Query: 247 GIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE 306
GI P + ++ GF ++++ +T + + ++ ++ L G + +
Sbjct: 63 GITPEQMIGEMSQEHQTDFAGFNI--SYDNYHSTHSEENRQLSELIYSRLKENGFIKNRT 120
Query: 307 ATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLAN 354
+ +DP L D V SGA R +F +
Sbjct: 121 ISQLYDPEKGMFLPDRFVV-------SGATPVMRDSEHFFFDLPSFSE 161
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 133 bits (334), Expect = 2e-36
Identities = 42/165 (25%), Positives = 64/165 (38%), Gaps = 10/165 (6%)
Query: 188 FYVLSMFPYPSGSLHMGHVR-VYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH 246
+ V S PY +G +H GH+ Y +D RY + G++V G D G P A +
Sbjct: 4 YMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE 63
Query: 247 GIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE 306
G PRE +K Q F++ T P +YK +Q FL Y G + +K
Sbjct: 64 GRSPREIVDEFHEQIKITFQRAKISFDFFGR--TELPIHYKLSQEFFLKAYENGHLVKKV 121
Query: 307 ATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTR 351
+ D L D G + R + ++I+
Sbjct: 122 TKQAYCEHDKMFLPDRF-------AICGRPISFRDSAHYYIKMQD 159
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 130 bits (328), Expect = 1e-35
Identities = 38/168 (22%), Positives = 68/168 (40%), Gaps = 3/168 (1%)
Query: 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH 246
FYV + Y + H+GH ++D LAR++ ++G F G D G AA
Sbjct: 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAA 63
Query: 247 GIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE 306
G DP+ + K G ++ + T + ++ K Q + +Y AG +Y E
Sbjct: 64 GEDPKAFVDRVSGRFKRAWDLLGIAYDD--FIRTTEERHKKVVQLVLKKVYEAGDIYYGE 121
Query: 307 ATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLAN 354
+ ++++ E + G VE+R+ +F R +
Sbjct: 122 YEGLYCVSCERFYTEKELVEG-LCPIHGRPVERRKEGNYFFRMEKYRP 168
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 131 bits (330), Expect = 3e-35
Identities = 42/195 (21%), Positives = 67/195 (34%), Gaps = 18/195 (9%)
Query: 178 TLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGL 237
++E ++ + V P +G H+GH + + D RY M G + GWD GL
Sbjct: 30 SVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGL 89
Query: 238 PAENAAHQHGIDP-----------------REWTVGNIATMKSQLQGFGCKFNWESELAT 280
P E + RE ++ + + E AT
Sbjct: 90 PVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYAT 149
Query: 281 CDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLA-DEQVDEQGISWRSGARVEK 339
+P Y + +L+ GL+YR V + P T L+ E WR +
Sbjct: 150 LEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYPHCWRCSTPLMY 209
Query: 340 RRLSQWFIRTTRLAN 354
WFI+ T +
Sbjct: 210 YATESWFIKNTLFKD 224
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 129 bits (325), Expect = 2e-34
Identities = 51/185 (27%), Positives = 70/185 (37%), Gaps = 19/185 (10%)
Query: 182 KRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLP--- 238
K + F + P +GSLHMGH ++ D L RY M G G D G+
Sbjct: 30 KSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQV 89
Query: 239 -AENAAHQHGIDP------------REWTVGNIATMKSQLQGFGCKFNWESELATCDPKY 285
E + G +W + T+ QL+ G +W E T D K
Sbjct: 90 VVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKR 149
Query: 286 YKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQW 345
+ + F YH GL YR VNW P T L+D + R G +E QW
Sbjct: 150 SRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLE---VETCSRCGTPIEYAIFPQW 206
Query: 346 FIRTT 350
++R
Sbjct: 207 WLRMR 211
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 121 bits (304), Expect = 2e-31
Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 13/183 (7%)
Query: 178 TLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGL 237
LE + + F + PY +G+LHMGH + D + RY M G GWD GL
Sbjct: 40 ALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGL 99
Query: 238 PAENAAHQHGIDPREWTV------------GNIATMKSQLQGFGCKFNWESELATCDPKY 285
P E A + G+D ++ + I K + G + ++ T P+Y
Sbjct: 100 PIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEY 159
Query: 286 YKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQW 345
+F ++ GL+Y+ + V W P + LA+ + E WR+ V R QW
Sbjct: 160 EAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAE-IEYPHDWRTKKPVIFRATPQW 218
Query: 346 FIR 348
F
Sbjct: 219 FAS 221
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 63.6 bits (153), Expect = 6e-12
Identities = 14/72 (19%), Positives = 24/72 (33%)
Query: 182 KRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAEN 241
+R E YV+ PSG +H+G+ R + + G V WD + +
Sbjct: 13 ERGEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKV 72
Query: 242 AAHQHGIDPREW 253
+
Sbjct: 73 PRNVPQEWKDYL 84
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 57.3 bits (137), Expect = 7e-10
Identities = 27/153 (17%), Positives = 42/153 (27%), Gaps = 5/153 (3%)
Query: 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH 246
YV + Y H+GH R + D +ARY G + A+++
Sbjct: 24 GMYVCGITVY--DLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANEN 81
Query: 247 GIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE 306
G IA M AT + L L G Y +
Sbjct: 82 GESFVAMVDRMIAEMHKDFDALNILRPDMEPRATH---HIAEIIELTEQLIAKGHAYVAD 138
Query: 307 ATVNWDPIDNTVLADEQVDEQGISWRSGARVEK 339
+ + ++GARV+
Sbjct: 139 NGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDV 171
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS)
{Thermus thermophilus [TaxId: 274]}
Length = 370
Score = 39.5 bits (91), Expect = 5e-04
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNV 226
P+ LH+GH+R + D +AR A G+ V
Sbjct: 16 VNPNKELHVGHLRNIALGDAIARILAYAGREV 47
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 348
Score = 36.8 bits (84), Expect = 0.003
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNV 226
P + H GH+R I LA Y G V
Sbjct: 17 PNIAKPFHAGHLRSTIIGGFLANLYEKLGWEV 48
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS)
{Thermus thermophilus [TaxId: 274]}
Length = 305
Score = 32.5 bits (73), Expect = 0.063
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGK 224
P P+G H+G + + AR G+
Sbjct: 8 PSPTGDPHVGTAYIALFNYAWARRN--GGR 35
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS)
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 31.4 bits (70), Expect = 0.14
Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 21/112 (18%)
Query: 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWT 254
P P+G LH+GH + ++ +A+ Y G+ L ++ +P +
Sbjct: 26 PEPNGYLHIGHAKSICLNFGIAQDY--KGQ----------CNLRFDD------TNPVKED 67
Query: 255 VGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE 306
+ + ++K+ ++ G ++ ++ Y+ A ++L + GL Y E
Sbjct: 68 IEYVESIKNDVEWLGFHWSGNVRYSS---DYFDQLHAYAIELINKGLAYVDE 116
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB
{Escherichia coli [TaxId: 562]}
Length = 286
Score = 30.6 bits (68), Expect = 0.23
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGK 224
P PSG LH G + S AR G+
Sbjct: 9 PSPSGELHFGSLIAALGSYLQARAR--QGR 36
>d1nvma1 a.5.7.1 (A:291-341) 4-hydroxy-2-oxovalerate aldolase DmpG,
communication domain {Pseudomonas sp. [TaxId: 306]}
Length = 51
Score = 26.2 bits (58), Expect = 0.87
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 235 FGLPAENAAHQHGIDPRE 252
F AE AA ++ + +
Sbjct: 4 FLRHAEIAAAKYNLKTLD 21
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 339
Score = 27.2 bits (59), Expect = 3.8
Identities = 13/125 (10%), Positives = 31/125 (24%), Gaps = 13/125 (10%)
Query: 179 LEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLP 238
L+ +E + +G H+ + + M+ F G + L
Sbjct: 24 LKEILKERELKIYWGTA-TTGKPHVAY------------FVPMSKIADFLKAGCEVTILF 70
Query: 239 AENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYH 298
A+ A+ + + + + + K + + L
Sbjct: 71 ADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDV 130
Query: 299 AGLVY 303
L
Sbjct: 131 YRLSS 135
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 306
Score = 26.1 bits (56), Expect = 6.6
Identities = 17/98 (17%), Positives = 25/98 (25%), Gaps = 13/98 (13%)
Query: 197 PSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVG 256
PSG +H+GH Y + Q G+D L A+ A+ + +
Sbjct: 37 PSGKIHLGH------------YLQIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRK 84
Query: 257 NIA-TMKSQLQGFGCKFNWESELATCDPKYYKWTQALF 293
K D Y L
Sbjct: 85 IGDYNKKVFEAMGLKAKYVYGSEFQLDKDYTLNVYRLA 122
>d1b25a1 a.110.1.1 (A:211-619) Formaldehyde ferredoxin
oxidoreductase {Archaeon Pyrococcus furiosus [TaxId:
2261]}
Length = 409
Score = 26.1 bits (57), Expect = 8.8
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 8/55 (14%)
Query: 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGID 249
SG H+ + L+ YY + GWD G+P + + +D
Sbjct: 350 GLKSGPHKGEHLDEKKYDELLSEYYRI--------RGWDERGIPKKETLKELDLD 396
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.403
Gapped
Lambda K H
0.267 0.0413 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,391,802
Number of extensions: 65150
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 19
Length of query: 365
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 278
Effective length of database: 1,213,086
Effective search space: 337237908
Effective search space used: 337237908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)