Query psy7924
Match_columns 481
No_of_seqs 502 out of 1314
Neff 11.8
Searched_HMMs 29240
Date Fri Aug 16 22:22:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7924.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7924hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.8E-45 6.1E-50 351.9 29.4 422 2-468 25-486 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 5.3E-34 1.8E-38 269.6 14.6 368 6-444 45-433 (451)
3 3o7q_A L-fucose-proton symport 100.0 1.3E-31 4.5E-36 252.2 19.1 349 4-435 41-423 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 3.7E-28 1.3E-32 232.0 21.1 383 21-449 48-476 (491)
5 2gfp_A EMRD, multidrug resista 100.0 1.2E-29 4E-34 233.5 7.5 335 5-429 16-361 (375)
6 2cfq_A Lactose permease; trans 99.9 2.4E-28 8.2E-33 227.4 7.7 361 7-449 25-404 (417)
7 2xut_A Proton/peptide symporte 99.9 2E-24 6.8E-29 207.8 10.3 138 21-195 42-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.7 1.3E-15 4.4E-20 143.5 15.7 178 264-450 33-212 (451)
9 3o7q_A L-fucose-proton symport 99.6 1.1E-13 3.7E-18 129.8 19.6 159 275-442 42-227 (438)
10 4aps_A DI-OR tripeptide H+ sym 99.5 5.1E-14 1.7E-18 134.1 13.2 169 264-444 19-196 (491)
11 2gfp_A EMRD, multidrug resista 99.5 7.2E-14 2.5E-18 128.1 8.4 164 275-450 16-180 (375)
12 2xut_A Proton/peptide symporte 99.5 1.1E-12 3.7E-17 126.0 17.0 156 276-442 30-196 (524)
13 4gc0_A D-xylose-proton symport 99.2 1.3E-10 4.3E-15 110.6 15.4 122 297-419 59-187 (491)
14 2cfq_A Lactose permease; trans 98.9 1.3E-10 4.4E-15 107.8 -1.1 144 281-433 30-176 (417)
15 2g9p_A Antimicrobial peptide l 59.1 8.2 0.00028 17.6 2.0 14 312-325 2-15 (26)
16 2b6o_A Aquaporin-0, lens fiber 51.0 26 0.00089 29.2 5.5 33 421-453 198-230 (263)
17 3iyz_A Aquaporin-4; water tran 32.9 2.4E+02 0.0083 24.4 14.4 22 421-442 244-265 (340)
18 1j4n_A Aquaporin 1; membrane p 32.7 81 0.0028 26.4 5.7 30 421-450 208-237 (271)
19 3arc_T Photosystem II reaction 31.0 58 0.002 16.7 2.9 11 191-201 18-28 (32)
20 3d9s_A Aquaporin-5, AQP-5; aqu 28.5 81 0.0028 26.3 5.0 22 424-445 204-225 (266)
21 1cmk_I CAMP-dependent protein 22.8 17 0.0006 17.5 -0.0 10 51-60 9-18 (26)
22 2dw3_A Intrinsic membrane prot 20.1 1.8E+02 0.0061 18.5 4.5 12 440-451 49-60 (77)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.8e-45 Score=351.91 Aligned_cols=422 Identities=26% Similarity=0.392 Sum_probs=317.3
Q ss_pred ccccccccccccccccCCCCc--------ccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHH
Q psy7924 2 GTILGWTSPAGDRLIAGEYPF--------LVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDL 73 (481)
Q Consensus 2 g~~~g~~~~~~~~~~~~~~~~--------~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~ 73 (481)
|++.+..++.+|.+.+ ++ +.++++.|++.+++.+|..+|++++|+++||+|||+++.++.+++.+++++
T Consensus 25 Gyd~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~ 101 (491)
T 4gc0_A 25 GYDTAVISGTVESLNT---VFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVG 101 (491)
T ss_dssp HHHHHGGGGTHHHHHH---HHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 4555666777777766 44 334567899999999999999999999999999999999999999999999
Q ss_pred HH------------------HHHHhHHhHhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHH
Q psy7924 74 SF------------------IGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWV 128 (481)
Q Consensus 74 ~~------------------~~~~~~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~ 128 (481)
++ +++|++ ++ +++|+++ |++.|...+..+. +++|++..+..+.+.
T Consensus 102 ~a~~~~~~~~~~~~~~~~~~~a~~~~--~l----~~~R~l~--G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~-- 171 (491)
T 4gc0_A 102 SAWPELGFTSINPDNTVPVYLAGYVP--EF----VIYRIIG--GIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAI-- 171 (491)
T ss_dssp HHCTTTTTSCSSSSSSCCGGGGGCHH--HH----HHHHHHH--HHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHH--
T ss_pred HHHHhhhhhhhcchhHHHHHHhhhHH--HH----HHHHHHH--HHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhh--
Confidence 98 477888 99 9999999 9999888777766 788999999999998
Q ss_pred HHhhhccccccccccccccchhhhhhhhhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCc
Q psy7924 129 LISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNR 208 (481)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~ 208 (481)
..|.+.+...+....... .........||..+.+..++.++..+..+++||||+|+..+++
T Consensus 172 ------------------~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~ 232 (491)
T 4gc0_A 172 ------------------IFGQLLVYCVNYFIARSG-DASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGK 232 (491)
T ss_dssp ------------------HHHHHHHHHHHHHHHTTS-CTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTC
T ss_pred ------------------hhhhhhhhhcchhhcccc-ccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCc
Confidence 888888777763221100 0111234679999999999999888888899999999999999
Q ss_pred HHHHHHHHHHHhCCCccchHHHHHHHHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhh
Q psy7924 209 VKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKD 288 (481)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (481)
.|++.+.+++..+++...++..+.. +..+++++ .......++ .++...........++.+.+...+|.+.+.+.
T Consensus 233 ~~~a~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (491)
T 4gc0_A 233 QEQAEGILRKIMGNTLATQAVQEIK-HSLDHGRK-TGGRLLMFG----VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT 306 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HTTHHHHSC----CTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHHhcCCchhHHHHHHHH-HHHHhhhh-hhhHHHHhc----ccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh
Confidence 9999999888765432222111111 11111111 111122222 23455556666677777788888899999888
Q ss_pred cCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHH
Q psy7924 289 AGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVF 367 (481)
Q Consensus 289 ~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (481)
.+.+. +........++...++.++.+++.||+|||+.+..+.....++.+.++...... ...+..+....++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~ 379 (491)
T 4gc0_A 307 LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ-------APGIVALLSMLFY 379 (491)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT-------CCHHHHHHHHHHH
T ss_pred cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc-------cchHHHHHHHHHH
Confidence 77765 445567777888999999999999999999999999888888877766543221 2223444455556
Q ss_pred HHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHH------hhcCChhHHHHHHHHHHHHHHH
Q psy7924 368 IIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTL------LLGGHGAFWIFSVIAALGAVFT 441 (481)
Q Consensus 368 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~ 441 (481)
..+++.+..++.+.+.+|++|++.|+++.|+.+..+++++.+++.+.+.+.+ ..++...|+++++++++..++.
T Consensus 380 ~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~ 459 (491)
T 4gc0_A 380 VAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFM 459 (491)
T ss_dssp HHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 6667777888888999999999999999999999999999999988765533 3456678889999999999999
Q ss_pred HHhccCCCCCCHHHHHHHhcCCCCCcc
Q psy7924 442 YILVPETKGKTLDEIQMELGGNGESNE 468 (481)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (481)
++++||||+|++||.|+..+++.++++
T Consensus 460 ~~~~PETkg~tLeei~~~f~~~~~~~~ 486 (491)
T 4gc0_A 460 WKFVPETKGKTLEELEALWEPETKKTQ 486 (491)
T ss_dssp HHHCCCCTTCCHHHHGGGTC-------
T ss_pred HheecCCCCCCHHHHHHHhCCCCcccc
Confidence 999999999999999888776554333
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=5.3e-34 Score=269.56 Aligned_cols=368 Identities=12% Similarity=0.033 Sum_probs=258.5
Q ss_pred ccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHH----HHHhH
Q psy7924 6 GWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFI----GSSMA 81 (481)
Q Consensus 6 g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~----~~~~~ 81 (481)
+...+.+|.+.+ ++ .+..+.+++.+++.++..++++++|+++||+|||+++.++.++.+++.+++++ +++++
T Consensus 45 ~~~~~~~~~~~~---~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (451)
T 1pw4_A 45 KNFALAMPYLVE---QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIA 120 (451)
T ss_dssp TSHHHHHHHTTS---ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSS
T ss_pred HHHHHHHHHHHH---Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHH
Confidence 445677888888 89 99999999999999999999999999999999999999999999999999999 99999
Q ss_pred HhHhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhh
Q psy7924 82 LGAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPI 154 (481)
Q Consensus 82 ~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 154 (481)
.+ +++|++. |++.+...+.... +++|++..+....+. .+|..+++
T Consensus 121 --~l----~~~~~l~--G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~--------------------~~g~~~g~ 172 (451)
T 1pw4_A 121 --VM----FVLLFLC--GWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAH--------------------NVGGGIPP 172 (451)
T ss_dssp --HH----HHHHHHH--HHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHH--------------------HHHHTSHH
T ss_pred --HH----HHHHHHH--HHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHH--------------------HHHHHHHH
Confidence 99 9999999 9988876655544 588999999999888 88888887
Q ss_pred hhhhhhhhhhHhhccchhhH-HHHHHHHhhHHHHHHHHHH-hccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHH
Q psy7924 155 SISQSRRLAQVIKERKFEAS-VYGLSIICALLPIFFVGLM-LLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITD 232 (481)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~-w~~~~~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 232 (481)
.++. ......+ ||+.|++.+++.++..+.. +++||+|+....+.+++. +.+.+. +
T Consensus 173 ~~~~---------~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~-~ 229 (451)
T 1pw4_A 173 LLFL---------LGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-------------KNDYPD-D 229 (451)
T ss_dssp HHHH---------HHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-------------CCC-----
T ss_pred HHHH---------HHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh-------------cccccc-c
Confidence 7772 1114556 9999999998887765554 468998865322111110 000000 0
Q ss_pred HHHhhhhhccCccc--hHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhh-cCCCC-chhHHHHHHHHHHHH
Q psy7924 233 MQNSLEKERSDKVP--LMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKD-AGSSL-NPNLCTIIVGTIMMV 308 (481)
Q Consensus 233 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~ 308 (481)
.+++ ++++....+ .++.++++..+. .....+.... .......+.|.+.++ .|.+. +.+.......++.++
T Consensus 230 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 303 (451)
T 1pw4_A 230 YNEK-AEQELTAKQIFMQYVLPNKLLWY----IAIANVFVYL-LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIP 303 (451)
T ss_dssp ----------CCTHHHHHHTSSCHHHHH----HHHHHHHHHH-HHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHH
T ss_pred chhh-hhcccccccchHHHHHcCHHHHH----HHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 0000 011111111 345566543322 2222222222 234445566666655 78876 566788888899999
Q ss_pred HHHHHHHHHHHh--CChHHHHHHHHHHH-HHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcc
Q psy7924 309 TTWIATMIVDRL--GRRILLLVSAVIMA-LSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGE 385 (481)
Q Consensus 309 ~~~~~g~l~d~~--grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 385 (481)
+.++.+++.||+ +||+.+..+..+.. ++.+.+... . ..+.+.......+.+.+.+.. .+....+..|
T Consensus 304 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~ 373 (451)
T 1pw4_A 304 GTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN----P-----AGNPTVDMICMIVIGFLIYGP-VMLIGLHALE 373 (451)
T ss_dssp HHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC----C-----TTCHHHHHHHHHHHHHHHTHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh----c-----ccCHHHHHHHHHHHHHHHhch-HHHHHHHHHH
Confidence 999999999999 99998877766665 444443321 0 112233333344444433332 3334578889
Q ss_pred cCcccchhhHHHHHHHHHHH-HHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHh
Q psy7924 386 IFPSQIKGIAVSIACLFNWV-SVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYIL 444 (481)
Q Consensus 386 ~~p~~~r~~~~g~~~~~~~~-g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 444 (481)
.+|++.|+++.|+.+...++ +..++|.+.+.+.+..|++..+.+.+++.++..++..+.
T Consensus 374 ~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 374 LAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp TSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 999999999999999999888888887777766655443
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.98 E-value=1.3e-31 Score=252.15 Aligned_cols=349 Identities=14% Similarity=0.064 Sum_probs=247.7
Q ss_pred ccccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHH---HHHHHh
Q psy7924 4 ILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLS---FIGSSM 80 (481)
Q Consensus 4 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~---~~~~~~ 80 (481)
..+...+.+|.+.+ ++|+++.+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.+++ .+++++
T Consensus 41 ~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~ 117 (438)
T 3o7q_A 41 ANNLNDILLPQFQQ---AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNY 117 (438)
T ss_dssp HHHHHHHHHHHHHH---HSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHhHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccH
Confidence 34556778889988 999999999999999999999999999999999999999999999999999999 788899
Q ss_pred HHhHhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhh
Q psy7924 81 ALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCP 153 (481)
Q Consensus 81 ~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 153 (481)
+ .+ +++|++. |++.+...+.... +++|++..+..+.+. .+|..++
T Consensus 118 ~--~l----~~~~~l~--G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--------------------~~g~~~g 169 (438)
T 3o7q_A 118 T--LF----LVGLFII--AAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFN--------------------SFGAIIA 169 (438)
T ss_dssp H--HH----HHHHHHH--HHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHH--------------------HHHHHHH
T ss_pred H--HH----HHHHHHH--HhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHH--------------------HHHHHHH
Confidence 9 99 9999999 9998877765554 688899999999988 8888888
Q ss_pred hhhhhhhhhhhHhhc------------------cchhhHHHHHHHHhhHHHHHHHHHHhc--cCCChhHHhhcCcHHHHH
Q psy7924 154 ISISQSRRLAQVIKE------------------RKFEASVYGLSIICALLPIFFVGLMLL--MPESPQFHLKKNRVKQAK 213 (481)
Q Consensus 154 ~~~~~~~~~~~~~~~------------------~~~~~~w~~~~~~~~~~~~~~~~~~~~--~~esp~~l~~~~~~~~a~ 213 (481)
+.++...... ..+. .....+||+.|++.+.+.++..+..++ .||+++.. ++
T Consensus 170 ~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~----- 240 (438)
T 3o7q_A 170 VVFGQSLILS-NVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---HS----- 240 (438)
T ss_dssp HHHTTHHHHT-SSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---CC-----
T ss_pred HHHHHHHHhc-ccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---cc-----
Confidence 8877322100 0000 001123999998877776665554443 56654210 00
Q ss_pred HHHHHHhCCCccchHHHHHHHHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHH-hhh-cCC
Q psy7924 214 ESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKI-FKD-AGS 291 (481)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~g~ 291 (481)
.+++++.+.+.++.+++|..+...+..+ ..... ......+.|.+ .++ .|.
T Consensus 241 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~g~ 292 (438)
T 3o7q_A 241 -----------------------DAKQGSFSASLSRLARIRHWRWAVLAQF----CYVGA-QTACWSYLIRYAVEEIPGM 292 (438)
T ss_dssp -----------------------CSSTTSHHHHHHHHTTCSHHHHHHHHHH----HHHHH-HHHHHHHHHHHHHHHSTTC
T ss_pred -----------------------cccccchhhhHHHHHhChHHHHHHHHHH----HHHHH-HHHHHHHHHHHhhhccCCc
Confidence 0011112235567777764443322222 22111 23333444544 554 488
Q ss_pred CC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHH
Q psy7924 292 SL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIV 370 (481)
Q Consensus 292 ~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (481)
+. +.+.......++..++.++.++++||+|||+.+..+.++..++.+..... +..+ ......+.+++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~-~~~~~~~~g~~ 360 (438)
T 3o7q_A 293 TAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-----------GGHV-GLIALTLCSAF 360 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-----------CHHH-HHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc-----------CCcH-HHHHHHHHHHH
Confidence 76 56777888889999999999999999999999998888887776665442 2222 23333444444
Q ss_pred HhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhc-CChhHHHHHHHHH
Q psy7924 371 FSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLG-GHGAFWIFSVIAA 435 (481)
Q Consensus 371 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~ 435 (481)
.+... +..+.+..|.+|++ ++++.++.. .+.+++.++|.+.|.+.+..| ++..+.+.+++.+
T Consensus 361 ~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 423 (438)
T 3o7q_A 361 MSIQY-PTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFA 423 (438)
T ss_dssp HTTHH-HHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHH
T ss_pred HHHHH-HHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 44333 45567778999977 888888877 677999999999999999999 8888876544433
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.96 E-value=3.7e-28 Score=231.96 Aligned_cols=383 Identities=11% Similarity=-0.047 Sum_probs=232.3
Q ss_pred CcccCchhhHHHHHHHHHHHhhhhhhhhhhhcc-ccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhhhhHHHHhhcccc
Q psy7924 21 PFLVTESDLSFIGSSMALGAVFGSPVVGNLVDT-VGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVG 99 (481)
Q Consensus 21 ~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~r~~~~~G 99 (481)
|+|.+..+.+++.+.+.++..+++++.|+++|| +|||+++..+.++..++.++++++++++ .+ +++|++. |
T Consensus 48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~l~--g 119 (491)
T 4aps_A 48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGAS--AL----FGSIILI--I 119 (491)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTT--HH----HHHHHHH--H
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHH--HH----HHHHHHH--H
Confidence 599999999999999999999999999999999 8999999999999999999999999999 99 9999999 9
Q ss_pred ccceeeeeeccc-------ccc--ccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhHhhccc
Q psy7924 100 RKNTMLLLAVPS-------FDI--RPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKERK 170 (481)
Q Consensus 100 ~~~~~~~~~~~~-------~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 170 (481)
++.+...+.... +++ |+...+..+.+. .+|..+++.++ +...
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--------------------~~g~~~~~~~~---------~~l~ 170 (491)
T 4aps_A 120 IGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGI--------------------NLGAFIAPLIV---------GAAQ 170 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHH--------------------HHHHHHHHHHH---------HHHH
T ss_pred HHHHhccchHHHHHHHHcCcccccceeeehHHHHHH--------------------HHHHHHHHHHH---------HHHH
Confidence 998877665554 445 666777677777 78888777776 2222
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHhcc-CC----ChhHHhhcCcHHHHHHHHHH---------------HhCCCccchHHH
Q psy7924 171 FEASVYGLSIICALLPIFFVGLMLLM-PE----SPQFHLKKNRVKQAKESLQW---------------FRGSEYDIDSEI 230 (481)
Q Consensus 171 ~~~~w~~~~~~~~~~~~~~~~~~~~~-~e----sp~~l~~~~~~~~a~~~~~~---------------~~~~~~~~~~~~ 230 (481)
...+||+.|++.++..++..+...+. |+ ..+....+.+.++.++..++ ...+..+.++..
T Consensus 171 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 250 (491)
T 4aps_A 171 EAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYI 250 (491)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccch
Confidence 55789999999877766555544322 11 11000111122333332222 000111111100
Q ss_pred HHHH---------HhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHh-hhcCCCC-chhHHH
Q psy7924 231 TDMQ---------NSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIF-KDAGSSL-NPNLCT 299 (481)
Q Consensus 231 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~-~~~~~~ 299 (481)
.... ......+..+.+ +..+++ ................ .+.....+.+.+. +..+.+. ..+...
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (491)
T 4aps_A 251 NLLTIVAIAIPVFYFAWMISSVKVT--STEHLR--VVSYIPLFIAAVLFWA-IEEQGSVVLATFAAERVDSSWFPVSWFQ 325 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHC----------------CTTHHHHHHHHHHHHH-HHGGGGTHHHHHHHHSCCCSSSCSGGGT
T ss_pred hhhhHHHHHHHHHHHHHHhhccccc--HHHHHH--HHHHHHHHHHHHHHHH-HHhhccHHHHHHHHHHhccCccCHHHHh
Confidence 0000 000000000000 011111 1111111111111111 1222333334333 3355553 556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCChHHHH-----HHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhc
Q psy7924 300 IIVGTIMMVTTWIATMIVDRLGRRILLL-----VSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLG 374 (481)
Q Consensus 300 ~~~~~~~~~~~~~~g~l~d~~grr~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (481)
....+...++.++.+++.||++||+... .+..+.+++.+.+........... ..+.+.......+.+.+.+..
T Consensus 326 ~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~ 403 (491)
T 4aps_A 326 SLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSG--KVSPLWLVGSWALVILGEMLI 403 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCT--TCCTHHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CccHHHHHHHHHHHHHHHHHH
Confidence 7778888888999999999999986544 556666665555544322211110 123334444444454444433
Q ss_pred cCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhccCCC
Q psy7924 375 FGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETK 449 (481)
Q Consensus 375 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (481)
.+..+.++.|.+|++.|+++.|+.+...++|..+++.+.+.+.+ .++...+.+.++++++..++.++..++.+
T Consensus 404 -~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 404 -SPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp -TTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred -hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556899999999999999999999999999999999886654 46777888888777777776666555443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.96 E-value=1.2e-29 Score=233.52 Aligned_cols=335 Identities=14% Similarity=0.057 Sum_probs=235.3
Q ss_pred cccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhH
Q psy7924 5 LGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGA 84 (481)
Q Consensus 5 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (481)
.+...|.+|.+.+ ++|.++++.+++.+.+.++..+++++.|+++||+|||+++..+..+..++.++..++++++ .
T Consensus 16 ~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~--~ 90 (375)
T 2gfp_A 16 QTIYIPAIADMAR---DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLT--V 90 (375)
T ss_dssp HHHHHHHHHHHHT---TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred HHHHhhhhHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHH--H
Confidence 3445677888888 9999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred hhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhh
Q psy7924 85 VFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISIS 157 (481)
Q Consensus 85 l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 157 (481)
+ ++.|++. |++.+...+.... +++|++..+..+.+. .+|..+++.++
T Consensus 91 l----~~~~~l~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~g~~~~~~~~ 144 (375)
T 2gfp_A 91 L----IAASAMQ--GMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGI--------------------LVSPLLAPLIG 144 (375)
T ss_dssp H----HHHHHHH--HHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHH--------------------HHHHHHHHHHH
T ss_pred H----HHHHHHH--HHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHH--------------------HHHHHhhHHHH
Confidence 9 9999999 9988876655544 688999999999988 88888888877
Q ss_pred hhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHH-hccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHh
Q psy7924 158 QSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLM-LLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNS 236 (481)
Q Consensus 158 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 236 (481)
+...+..+||+.+++.++..++..+.. +++||+|+..
T Consensus 145 ---------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 182 (375)
T 2gfp_A 145 ---------GLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD--------------------------------- 182 (375)
T ss_dssp ---------HHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT---------------------------------
T ss_pred ---------HHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC---------------------------------
Confidence 333356789999999888887776634 4578876320
Q ss_pred hhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhh-cCCCC-chhHHHHHHHHHHHHHHHHHH
Q psy7924 237 LEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKD-AGSSL-NPNLCTIIVGTIMMVTTWIAT 314 (481)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~g 314 (481)
+++++.+.+.++.+|+|..+...+... .... .......+.|.+.++ .|.+. +.+.......++.+++.++.+
T Consensus 183 -~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 256 (375)
T 2gfp_A 183 -APRTRLLTSYKTLFGNSGFNCYLLMLI----GGLA-GIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAG 256 (375)
T ss_dssp -CCCCCTTTCSTHHHHHHHHHHHHHHHH----HHHH-HHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred -cccccHHHHHHHHhcCcchHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001112334556666654333222221 1111 223334444544444 66665 456677777788888999999
Q ss_pred HHHHHhCChHHHHHHHHH-HHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchh
Q psy7924 315 MIVDRLGRRILLLVSAVI-MALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKG 393 (481)
Q Consensus 315 ~l~d~~grr~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 393 (481)
++.||.+++ ...+... ...+......... . ..+.+.......+.+.+.+.... ....+..|.+| ++|+
T Consensus 257 ~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~p-~~~g 325 (375)
T 2gfp_A 257 RPNKRFSTL--MWQSVICCLLAGLLMWIPDWF-G------VMNVWTLLVPAALFFFGAGMLFP-LATSGAMEPFP-FLAG 325 (375)
T ss_dssp TTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH-H------HHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHTHHH-HHHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh-c------cccHHHHHHHHHHHHHHHHHhhH-HHHHHHHHhCC-cccc
Confidence 999988772 2222222 2222111111100 0 11223334445555555555444 44588889998 8999
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHH
Q psy7924 394 IAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWI 429 (481)
Q Consensus 394 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~ 429 (481)
++.|+.+...++|..++|.+.+.+.+..++...+.+
T Consensus 326 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 326 TAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 999999999999999999999998887666544443
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.95 E-value=2.4e-28 Score=227.44 Aligned_cols=361 Identities=13% Similarity=0.134 Sum_probs=206.9
Q ss_pred cccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHH---HHHHHHhHHh
Q psy7924 7 WTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDL---SFIGSSMALG 83 (481)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~---~~~~~~~~~~ 83 (481)
...|.+|...++ ++|.+..+.|++.+.+.++..++++++|+++||+|||++++++..++.++... ..+++... .
T Consensus 25 ~~~~~~~~~l~~--~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~ 101 (417)
T 2cfq_A 25 AYFPFFPIWLHD--INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQ-Y 101 (417)
T ss_dssp HHTTTHHHHHHT--TTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHH-T
T ss_pred HHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 335667764431 68999999999999999999999999999999999999999888776553221 12222211 0
Q ss_pred HhhhhhHHHHhhccccccceeeeeecc----c-----cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhh
Q psy7924 84 AVFGSPVVGNLVDTVGRKNTMLLLAVP----S-----FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPI 154 (481)
Q Consensus 84 ~l~g~~~~~r~~~~~G~~~~~~~~~~~----~-----~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 154 (481)
.+ +.++++. |...+....... . .++++...+....+. .+|..+++
T Consensus 102 ~~----~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--------------------~~g~~~~~ 155 (417)
T 2cfq_A 102 NI----LVGSIVG--GIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFG--------------------CVGWALGA 155 (417)
T ss_dssp TC----CHHHHGG--GSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSST--------------------TTHHHHHH
T ss_pred HH----HHHHHHH--HHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHH--------------------HHHHHHHH
Confidence 23 4455555 443332211111 1 122333333332233 56666666
Q ss_pred hhhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhccC-CChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHH
Q psy7924 155 SISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLMP-ESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDM 233 (481)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~-esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 233 (481)
.++.. . ...+||+.|++.++..++..+..++.| |+|+. .+.++ + +
T Consensus 156 ~l~~~---------l-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----------~-~-------- 201 (417)
T 2cfq_A 156 SIVGI---------M-FTINNQFVFWLGSGCALILAVLLFFAKTDAPSS----ATVAN-----------A-V-------- 201 (417)
T ss_dssp HHHHH---------H-HHHCSHHHHTTTTTTTTTHHHHSCSSCCCCSCS----SCSSS-----------S-S--------
T ss_pred HHHHH---------H-HHhchhHHHHHHHHHHHHHHHHHHHcCcccccc----ccccc-----------c-c--------
Confidence 55511 1 124689999888777655554444444 43310 00000 0 0
Q ss_pred HHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhh-cCC---CC-chhHHHHHHHHHHHH
Q psy7924 234 QNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKD-AGS---SL-NPNLCTIIVGTIMMV 308 (481)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~---~~-~~~~~~~~~~~~~~~ 308 (481)
+.++++....+.++.++++..+...+..+.... .+.....+.|.+..+ .+. +. ..+.......+..++
T Consensus 202 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 274 (417)
T 2cfq_A 202 --GANHSAFSLKLALELFRQPKLWFLSLYVIGVSC-----TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNAS 274 (417)
T ss_dssp --SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHH
T ss_pred --ccccccccHHHHHHHhcCCchhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Confidence 000001111234567777654432222111111 112222223333332 221 11 123445556677788
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCc
Q psy7924 309 TTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFP 388 (481)
Q Consensus 309 ~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 388 (481)
+.++.++++||+|||+.+..+..+.+++.+.+.. .++.+...+...+.+.+..... +..+.+.+|.+|
T Consensus 275 ~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~p 342 (417)
T 2cfq_A 275 IMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF-----------ATSALEVVILKTLHMFEVPFLL-VGCFKYITSQFE 342 (417)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-----------CCSHHHHHHHTTHHHHHHHHHH-HHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-----------hccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCC
Confidence 9999999999999999988877777666544432 1122222222222232222212 233578899999
Q ss_pred ccchhhHHHHH-HHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhccCCC
Q psy7924 389 SQIKGIAVSIA-CLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETK 449 (481)
Q Consensus 389 ~~~r~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (481)
++.|+++.++. +...++|+.++|.+.|.+.+..|+...|.+.++++++..++.+...||++
T Consensus 343 ~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 343 VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999995 78888999999999999999888777787777777766665555555543
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.90 E-value=2e-24 Score=207.84 Aligned_cols=138 Identities=15% Similarity=0.051 Sum_probs=112.9
Q ss_pred Ccc------cCchhhHHHHHHHHHHHhhhhhhhhhhhccc-cchhhhhhhhhhHHHHhHHHHHHH-HhHHhHhhhhhHHH
Q psy7924 21 PFL------VTESDLSFIGSSMALGAVFGSPVVGNLVDTV-GRKNTMLLLAVPTVTESDLSFIGS-SMALGAVFGSPVVG 92 (481)
Q Consensus 21 ~~~------~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~g~~~~~ 92 (481)
++| .+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++.++++ +++ .+ +++
T Consensus 42 ~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~ 115 (524)
T 2xut_A 42 ALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQ--GF----YTG 115 (524)
T ss_dssp SCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHH--HH----HHH
T ss_pred HhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHH--HH----HHH
Confidence 677 9999999999999999999999999999999 999999999999999999999998 888 88 999
Q ss_pred Hhhccccccceeeeeeccc-------cccccchhhh---hhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhh
Q psy7924 93 NLVDTVGRKNTMLLLAVPS-------FDIRPLLGET---SQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRL 162 (481)
Q Consensus 93 r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ 162 (481)
|++. |++.+...+.... +++|+...+. ...+. .+|..+++.+..
T Consensus 116 ~~l~--g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~--------------------~~g~~~g~~~~~---- 169 (524)
T 2xut_A 116 LFLI--ALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTI--------------------NFGSFFASLSMP---- 169 (524)
T ss_dssp HHHH--HHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHH--------------------HHHHHHHHHTST----
T ss_pred HHHH--HHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHH--------------------HHHHHHHHHHHH----
Confidence 9999 9988876655544 5667665555 66666 777777777762
Q ss_pred hhHhhccchhhHHHHHHHHhhHHHHHHHHHHhc
Q psy7924 163 AQVIKERKFEASVYGLSIICALLPIFFVGLMLL 195 (481)
Q Consensus 163 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 195 (481)
......+||+.|++.++..++..+..++
T Consensus 170 -----~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 170 -----LLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp -----HHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred -----HHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 2224568999999988887666555443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.66 E-value=1.3e-15 Score=143.50 Aligned_cols=178 Identities=14% Similarity=0.098 Sum_probs=136.8
Q ss_pred HHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Q psy7924 264 LGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGY 342 (481)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 342 (481)
.....+.............|.+.++. .+. +.+.......++..++.++.|+++||+|||+.+..+.++.+++.+...+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 111 (451)
T 1pw4_A 33 IFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGF 111 (451)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHh
Confidence 33333333333445566677787777 776 6788888899999999999999999999999999999999988888766
Q ss_pred HHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhc
Q psy7924 343 YFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLG 422 (481)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g 422 (481)
.... .++.+..++...+.+++.+... +...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..|
T Consensus 112 ~~~~-------~~~~~~l~~~~~l~G~~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 183 (451)
T 1pw4_A 112 VPWA-------TSSIAVMFVLLFLCGWFQGMGW-PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 183 (451)
T ss_dssp CHHH-------HSSSSHHHHHHHHHHHHHHHTH-HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred hhhc-------cccHHHHHHHHHHHHHHhhhcc-chHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2110 0123445555556666555444 4445888999999999999999999999999999999999889898
Q ss_pred -CChhHHHHHHHHHHHHHHHHHhccCCCC
Q psy7924 423 -GHGAFWIFSVIAALGAVFTYILVPETKG 450 (481)
Q Consensus 423 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (481)
|+..|++.+++.++..++..+..||+++
T Consensus 184 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 184 DWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp CSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 9999999988888877777777777544
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.58 E-value=1.1e-13 Score=129.79 Aligned_cols=159 Identities=12% Similarity=-0.007 Sum_probs=123.1
Q ss_pred hhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy7924 275 INAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDV 353 (481)
Q Consensus 275 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (481)
........|.+.++.|.+. +.+.......++..++.++.|+++||+|||+.+..+.++.+++.++......
T Consensus 42 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-------- 113 (438)
T 3o7q_A 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-------- 113 (438)
T ss_dssp HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc--------
Confidence 3555666788888899988 6688888999999999999999999999999999999999988887732111
Q ss_pred cccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHH-Hhhc----------
Q psy7924 354 SNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVT-LLLG---------- 422 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~-~~~g---------- 422 (481)
.++.+..++...+.+.+.+...... ..++.|.+|+++|+++.++.+....+|..++|.+.+.+. +..+
T Consensus 114 ~~~~~~l~~~~~l~G~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~ 192 (438)
T 3o7q_A 114 IMNYTLFLVGLFIIAAGLGCLETAA-NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKM 192 (438)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHS
T ss_pred cccHHHHHHHHHHHHhhHHHhhhhH-HHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 2344555566666666655544444 588999999999999999999999999999999999888 4443
Q ss_pred ---------------CChhHHHHHHHHHHHHHHHH
Q psy7924 423 ---------------GHGAFWIFSVIAALGAVFTY 442 (481)
Q Consensus 423 ---------------~~~~~~~~~~~~~~~~~~~~ 442 (481)
|++.|.+.+.+..+..++..
T Consensus 193 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 193 SPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 67777766666655555443
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.53 E-value=5.1e-14 Score=134.11 Aligned_cols=169 Identities=15% Similarity=0.167 Sum_probs=126.1
Q ss_pred HHHHHHHHhhhhhhhhHhhHHHhhh-----cCCCC-chhHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHH
Q psy7924 264 LGVMFIQQFGGINAVVFYTVKIFKD-----AGSSL-NPNLCTIIVGTIMMVTTWIATMIVDR-LGRRILLLVSAVIMALS 336 (481)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~ 336 (481)
....+...+..+.......+++.+. .|.+. +.+.......++..++.++.|+++|| +|||+.+..+.++..++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~ 98 (491)
T 4aps_A 19 FMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLG 98 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 3333333333334444555555555 78877 66778888999999999999999999 89999999999998888
Q ss_pred HHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccc--hhhHHHHHHHHHHHHHHHHHhHH
Q psy7924 337 TLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQI--KGIAVSIACLFNWVSVLVVTKFF 414 (481)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~g~~~~~~~~g~~~~~~~~ 414 (481)
.+.... .++.+...+...+.+.+.+... +...++++|.+|+++ |+.+.++.+...++|..++|.+.
T Consensus 99 ~~~~~~-----------~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 166 (491)
T 4aps_A 99 HIVLAL-----------PFGASALFGSIILIIIGTGFLK-PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV 166 (491)
T ss_dssp HHHHHS-----------CCSTTHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----------hhhHHHHHHHHHHHHHHHHhcc-chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence 877755 3344555555666666555444 444588899999988 77788888999999999999999
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHHHHh
Q psy7924 415 GDVTLLLGGHGAFWIFSVIAALGAVFTYIL 444 (481)
Q Consensus 415 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 444 (481)
+.+.+..||++.|.+.++..++..++..+.
T Consensus 167 ~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 167 GAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999988776666655554433
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.47 E-value=7.2e-14 Score=128.07 Aligned_cols=164 Identities=16% Similarity=0.067 Sum_probs=127.0
Q ss_pred hhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy7924 275 INAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDV 353 (481)
Q Consensus 275 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (481)
........|.+.++.|.+. +.+.......+...++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---------- 85 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT---------- 85 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh----------
Confidence 3444455677778888887 56778888899999999999999999999999999999888888877663
Q ss_pred cccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHH
Q psy7924 354 SNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVI 433 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~ 433 (481)
++.+.......+.+.+.+... +....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+|+..+.+.++.
T Consensus 86 -~~~~~l~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (375)
T 2gfp_A 86 -SSLTVLIAASAMQGMGTGVGG-VMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVL 163 (375)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 233444444555555544333 444588899999999999999999999999999999999888888999888877777
Q ss_pred HHHHHHHHHHhccCCCC
Q psy7924 434 AALGAVFTYILVPETKG 450 (481)
Q Consensus 434 ~~~~~~~~~~~~~~~~~ 450 (481)
..+..+...+..||+++
T Consensus 164 ~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 164 CAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHHHCcccCC
Confidence 76665544455666543
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.47 E-value=1.1e-12 Score=125.97 Aligned_cols=156 Identities=13% Similarity=0.025 Sum_probs=117.9
Q ss_pred hhhhHhhHHHhhhcC------CCC-chhHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7924 276 NAVVFYTVKIFKDAG------SSL-NPNLCTIIVGTIMMVTTWIATMIVDRL-GRRILLLVSAVIMALSTLTMGYYFYLK 347 (481)
Q Consensus 276 ~~~~~~~~~~~~~~g------~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~ 347 (481)
.......+++.++.| .+. +.+.......++..++.++.|+++||+ |||+.+..+.++..++.++....
T Consensus 30 ~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~---- 105 (524)
T 2xut_A 30 GMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF---- 105 (524)
T ss_dssp HHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh----
Confidence 344445555666677 776 667888888999999999999999999 99999999998888888777652
Q ss_pred CCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHH---HHHHHHHHHHHHHhHHHHHHHhhcCC
Q psy7924 348 NSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSI---ACLFNWVSVLVVTKFFGDVTLLLGGH 424 (481)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~---~~~~~~~g~~~~~~~~~~~~~~~g~~ 424 (481)
..+.+...+...+.+.+.+... +...+++.|.+|+++|++..+. .+...++|..++|.+.+.+.+..||+
T Consensus 106 ------~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~ 178 (524)
T 2xut_A 106 ------EHSVQGFYTGLFLIALGSGGIK-PLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAA 178 (524)
T ss_dssp ------SSCHHHHHHHHHHHHHHHHTTH-HHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHH
T ss_pred ------cccHHHHHHHHHHHHHhccccc-hhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 1133444555555555544433 4445888999999999876666 88899999999999999999888999
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy7924 425 GAFWIFSVIAALGAVFTY 442 (481)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~ 442 (481)
..|.+.+++.++..++..
T Consensus 179 ~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 179 VAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888877776665544443
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.24 E-value=1.3e-10 Score=110.62 Aligned_cols=122 Identities=17% Similarity=0.054 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC-------CccccchhHHHHHHHHHH
Q psy7924 297 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGS-------DVSNIGWLPLGSLCVFII 369 (481)
Q Consensus 297 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 369 (481)
+......++.++|+++.|+++||+|||+.+..+.++..++.++.++......... ....+.+..++.-.+.++
T Consensus 59 ~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~ 138 (491)
T 4gc0_A 59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGI 138 (491)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHH
Confidence 4555667888999999999999999999999999999998888764211000000 002233445555666666
Q ss_pred HHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy7924 370 VFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTL 419 (481)
Q Consensus 370 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~ 419 (481)
+.+... +....+++|..|++.|+...++.+.....|...++.+......
T Consensus 139 g~G~~~-~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~ 187 (491)
T 4gc0_A 139 GVGLAS-MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIAR 187 (491)
T ss_dssp HHHHHH-HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcc
Confidence 555444 4445899999999999999999998888888877776655443
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.88 E-value=1.3e-10 Score=107.80 Aligned_cols=144 Identities=14% Similarity=0.114 Sum_probs=83.2
Q ss_pred hhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchh
Q psy7924 281 YTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWL 359 (481)
Q Consensus 281 ~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (481)
.+.++.++.|.+. +.+.......++..+++++.|+++||+|||+.+..+..+..+........... ......
T Consensus 30 ~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 102 (417)
T 2cfq_A 30 FPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG-------PLLQYN 102 (417)
T ss_dssp HHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH-------HHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 3344445578887 67888888899999999999999999999999988777654422111100000 000000
Q ss_pred HHHHHHHHHHHHhhccCchhhhhhcccCcc--cchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHH
Q psy7924 360 PLGSLCVFIIVFSLGFGPIPWMLVGEIFPS--QIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVI 433 (481)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~ 433 (481)
......+.+...+....... ....+..++ +.++...|..+....+|..++|.+.+.+.+ .+|+..|++.++.
T Consensus 103 ~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~ 176 (417)
T 2cfq_A 103 ILVGSIVGGIYLGFCFNAGA-PAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGC 176 (417)
T ss_dssp CCHHHHGGGSSTTHHHHTTH-HHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHhhhH-HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHH
Confidence 01111111111111111111 222222222 355667777777788899999999888876 4787777655444
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=59.06 E-value=8.2 Score=17.61 Aligned_cols=14 Identities=14% Similarity=0.598 Sum_probs=11.1
Q ss_pred HHHHHHHHhCChHH
Q psy7924 312 IATMIVDRLGRRIL 325 (481)
Q Consensus 312 ~~g~l~d~~grr~~ 325 (481)
+.|.+..++|||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46789999999853
No 16
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=51.05 E-value=26 Score=29.25 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=18.8
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHhccCCCCCCH
Q psy7924 421 LGGHGAFWIFSVIAALGAVFTYILVPETKGKTL 453 (481)
Q Consensus 421 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (481)
+.+.|.+++.-.+..+.+.+.+.++..++.+..
T Consensus 198 ~~~~Wvy~vgP~~Ga~la~~~y~~l~~~~~~~~ 230 (263)
T 2b6o_A 198 FTNHWVYWVGPVIGAGLGSLLYDFLLFPRLKSV 230 (263)
T ss_dssp CTTCTHHHHHHHHHHHHHHHHHHTTTSCCSSCH
T ss_pred ccceeHHHHHHHHHHHHHHHHHHHHhCCccchh
Confidence 455677777666666666666555433333333
No 17
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=32.95 E-value=2.4e+02 Score=24.44 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=12.2
Q ss_pred hcCChhHHHHHHHHHHHHHHHH
Q psy7924 421 LGGHGAFWIFSVIAALGAVFTY 442 (481)
Q Consensus 421 ~g~~~~~~~~~~~~~~~~~~~~ 442 (481)
+++.|.+++.-.+..+.+.+++
T Consensus 244 w~~~WVywvgPiiGailaallY 265 (340)
T 3iyz_A 244 WENHWIYWVGPIIGAVLAGALY 265 (340)
T ss_pred CCcEeehhHHHHHHHHHHHHHH
Confidence 3455667665555555555444
No 18
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=32.67 E-value=81 Score=26.40 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=16.7
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHhccCCCC
Q psy7924 421 LGGHGAFWIFSVIAALGAVFTYILVPETKG 450 (481)
Q Consensus 421 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (481)
+.+.|.+++.-.+..+.+.+.+.++.+.+.
T Consensus 208 ~~~~wv~~vgP~~Ga~la~~~y~~~~~~~~ 237 (271)
T 1j4n_A 208 FQDHWIFWVGPFIGAALAVLIYDFILAPRS 237 (271)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHTTTSCCS
T ss_pred CcceeHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 345667776666666666555554433333
No 19
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=30.98 E-value=58 Score=16.66 Aligned_cols=11 Identities=18% Similarity=0.446 Sum_probs=7.0
Q ss_pred HHHhccCCChh
Q psy7924 191 GLMLLMPESPQ 201 (481)
Q Consensus 191 ~~~~~~~esp~ 201 (481)
....+++|+|+
T Consensus 18 FFAI~FRePPr 28 (32)
T 3arc_T 18 FFAIFFREPPR 28 (32)
T ss_dssp HHHHHTSCCCC
T ss_pred HHhhhhcCCCC
Confidence 33446788885
No 20
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=28.52 E-value=81 Score=26.33 Aligned_cols=22 Identities=27% Similarity=0.620 Sum_probs=11.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHhc
Q psy7924 424 HGAFWIFSVIAALGAVFTYILV 445 (481)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~ 445 (481)
.|.+++.-.+..+.+.+.+.++
T Consensus 204 ~Wvy~vgP~~Ga~la~~~y~~l 225 (266)
T 3d9s_A 204 HWVFWVGPIVGAVLAAILYFYL 225 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred EeeeehHHHHHHHHHHHHHHHH
Confidence 4566655555555555554443
No 21
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=22.76 E-value=17 Score=17.45 Aligned_cols=10 Identities=30% Similarity=0.660 Sum_probs=7.5
Q ss_pred hccccchhhh
Q psy7924 51 VDTVGRKNTM 60 (481)
Q Consensus 51 ~d~~Grr~~~ 60 (481)
+||-|||..+
T Consensus 9 ~~RtGRRNAl 18 (26)
T 1cmk_I 9 SGRTGRRNAI 18 (26)
T ss_pred cCcccccccc
Confidence 5788888754
No 22
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=20.06 E-value=1.8e+02 Score=18.52 Aligned_cols=12 Identities=8% Similarity=0.177 Sum_probs=6.6
Q ss_pred HHHHhccCCCCC
Q psy7924 440 FTYILVPETKGK 451 (481)
Q Consensus 440 ~~~~~~~~~~~~ 451 (481)
++-..+||..+.
T Consensus 49 ~iG~~LPE~Sr~ 60 (77)
T 2dw3_A 49 VVGRMLPIQENQ 60 (77)
T ss_dssp HHHHCTTTTCSS
T ss_pred HHHHhCchhccc
Confidence 334566776544
Done!