RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7924
(481 letters)
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 191 bits (488), Expect = 1e-55
Identities = 123/423 (29%), Positives = 203/423 (47%), Gaps = 52/423 (12%)
Query: 71 SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTML----LLAVPSFDIRPLLGETSQVTV 126
I S ++G + GS G L D GRK ++L L + + L G +
Sbjct: 46 VLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGAL----LQGFAKGKSF 101
Query: 127 WVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKERKFEASVYGLSI------ 180
++LI R+ VG +++L P+ IS+ K R S+Y L I
Sbjct: 102 YMLIVG---RVIVGLGVGG--ISVLVPMYISEIAPK----KLRGALGSLYQLGITFGILV 152
Query: 181 ----------------------ICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQW 218
+ + I + +L +PESP++ + K ++++A+ L
Sbjct: 153 AAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAK 212
Query: 219 FRGSEYDIDSEITDMQNSLEKERSDKVPLM-QAFSTPAAKRGLLIGLGVMFIQQFGGINA 277
RG D+D EI + ++SLE+ + + F ++ LL+G+ + QQ GINA
Sbjct: 213 LRGVS-DVDQEIQEEKDSLERSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINA 271
Query: 278 VVFYTVKIFKDAGSSLNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALST 337
+ +Y+ IF+ G S + L TIIVG + V T+IA +VDR GRR LLL+ A MA+
Sbjct: 272 IFYYSPTIFETLGLS-DSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICF 330
Query: 338 LTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVS 397
L +G + + + +FI F+LG+GP+PW++V E+FP ++ A++
Sbjct: 331 LVLGVALLGVAKSKGAGIVA---IVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMA 387
Query: 398 IACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQ 457
IA NW++ ++ F +T +GG F +F+ + L +F + VPETKG+TL+EI
Sbjct: 388 IATAANWLANFLIGFLFPIITGAIGG-YVFLVFAGLLVLFILFVFFFVPETKGRTLEEID 446
Query: 458 MEL 460
Sbjct: 447 ELF 449
Score = 33.8 bits (78), Expect = 0.19
Identities = 26/144 (18%), Positives = 54/144 (37%), Gaps = 21/144 (14%)
Query: 265 GVMFIQQFGGINAVVFYTVKIFKDAGSSLN-----PNLCTIIVGTIM----MVTTWIATM 315
G +F G I A + + + + + ++ +I ++ + A
Sbjct: 9 GFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIGSLFAGK 68
Query: 316 IVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGF 375
+ DR GR+ LL+ V+ + L G + + L +G I+ +G
Sbjct: 69 LGDRFGRKKSLLIGNVLFVIGALLQG--------FAKGKSFYMLIVGR---VIVGLGVGG 117
Query: 376 G-PIPWMLVGEIFPSQIKGIAVSI 398
+ M + EI P +++G S+
Sbjct: 118 ISVLVPMYISEIAPKKLRGALGSL 141
Score = 32.3 bits (74), Expect = 0.67
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 27 SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTML 61
I S ++G + GS G L D GRK ++L
Sbjct: 46 VLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLL 80
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 180 bits (458), Expect = 5e-51
Identities = 97/283 (34%), Positives = 160/283 (56%), Gaps = 9/283 (3%)
Query: 181 ICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKE 240
+ + + +PESP++ + K RV++A++SL RG+ D E+ D ++ +
Sbjct: 201 LQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTS-GEDKELLDELELIDIK 259
Query: 241 RSDKVPLMQAF------STPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAG-SSL 293
RS + +Q ST +R L +G+ + + QQF GINA+++Y+ IF++AG S+
Sbjct: 260 RSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTD 319
Query: 294 NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDV 353
+ L +IIVG + T++A +VDR GRR LLL+ A MA+ +G +GS
Sbjct: 320 HAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSK 379
Query: 354 SNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKF 413
S G + + + +FI F++G+GP+PW++V EIFP ++ +SIA NW++ +V
Sbjct: 380 S-SGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFL 438
Query: 414 FGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEI 456
F + +G G F F + LG +F Y +PETKG+TL+EI
Sbjct: 439 FPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 160 bits (407), Expect = 6e-44
Identities = 90/285 (31%), Positives = 155/285 (54%), Gaps = 34/285 (11%)
Query: 187 IFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVP 246
+ F+ L+ +PE+P++ + + + +QA+ L+ G+ + ++++SL+ R
Sbjct: 205 LLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNT-LATQALQEIKHSLDHGRKTGGK 263
Query: 247 LMQAFSTPAAKRGLLIGLGVMFI-------QQFGGINAVVFYTVKIFKDAGSSLNPNLC- 298
L L+ G+GV+ I QQF GIN V++Y +IFK G+S + L
Sbjct: 264 L------------LMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQ 311
Query: 299 TIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGW 358
TIIVG I + T +A M VD+ GR+ L ++ A+ MA+ ++G FY + G
Sbjct: 312 TIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGI------- 364
Query: 359 LPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFG--D 416
+ L S+ ++ F++ +GP+ W+L+ EIFP+ I+G A++IA W++ V+ F D
Sbjct: 365 VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMD 424
Query: 417 VTLLLGGHG----AFWIFSVIAALGAVFTYILVPETKGKTLDEIQ 457
L H ++WI+ + L A+F + VPETKGKTL+E++
Sbjct: 425 KNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEME 469
Score = 29.3 bits (66), Expect = 5.6
Identities = 38/150 (25%), Positives = 60/150 (40%), Gaps = 33/150 (22%)
Query: 319 RLGRRILLLVSAVIMALSTLTMGY---YFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGF 375
R GRR L ++AV+ +S L + F N G++P ++ I+ +G
Sbjct: 81 RFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPD----NTGYVP--EFVIYRIIGGIGV 134
Query: 376 G---PIPWMLVGEIFPSQIKGIAVS---IACLFNWVSVLVVTKFFGDVTLLLGGHGAFWI 429
G + M + EI P+ I+G VS A +F + V V F + A W+
Sbjct: 135 GLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYF------IARSGDASWL 188
Query: 430 FS-----------VIAALGAVFTYILVPET 448
+ + A L + Y VPET
Sbjct: 189 NTDGWRYMFASEAIPALLFLMLLY-FVPET 217
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 68.1 bits (167), Expect = 2e-12
Identities = 41/189 (21%), Positives = 73/189 (38%), Gaps = 15/189 (7%)
Query: 260 LLIGLGVMFIQQFGGINAVVFYTVKIFKDAG--SSLNPNLCTIIVGTIMMVTTWIATMIV 317
LL+ L + F G ++ Y ++ S+ L + G ++ + ++
Sbjct: 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLS 235
Query: 318 DRLGRR-ILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFG 376
DRLGRR +LLL+ ++ AL L + L L L +L + F
Sbjct: 236 DRLGRRRLLLLIGLLLAALGLLLLALAPSL-----------ALLLVALLLLGFGLGFAFP 284
Query: 377 PIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAAL 436
+ L E+ P + +G A + F + + G + G G F I + +A L
Sbjct: 285 ALL-TLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALL 343
Query: 437 GAVFTYILV 445
A+ +L
Sbjct: 344 AALLLLLLP 352
Score = 47.7 bits (114), Expect = 8e-06
Identities = 35/187 (18%), Positives = 68/187 (36%), Gaps = 12/187 (6%)
Query: 260 LLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNPNLCTIIVGTIMMVTTWIATMIVDR 319
LL+ F+ + S+ L + + +A + DR
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 320 LGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIP 379
GRR +LL+ ++ AL +L + + S++ L +G + + P
Sbjct: 61 FGRRRVLLLGLLLFALGSLLLAF----------ASSLWLLLVGR--FLLGLGGGALYPAA 108
Query: 380 WMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAV 439
L+ E FP + +G A+ + + L+ G + LG F I +++ L A+
Sbjct: 109 AALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLAL 168
Query: 440 FTYILVP 446
L+
Sbjct: 169 LLLFLLR 175
Score = 30.4 bits (69), Expect = 2.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 22 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLL 62
++ S I S+ +LG GS + G L D GR+ +LL
Sbjct: 29 LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLL 69
Score = 30.0 bits (68), Expect = 2.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 67 TVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLL 106
++ S I S+ +LG GS + G L D GR+ +LL
Sbjct: 30 GLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLL 69
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 51.5 bits (124), Expect = 5e-07
Identities = 33/169 (19%), Positives = 72/169 (42%), Gaps = 23/169 (13%)
Query: 238 EKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNPNL 297
EK + + P+ + + ++ L+GLG++ FY + + + L
Sbjct: 201 EKHKKKRGPIAETLTKH--RKPFLLGLGLVIAT------TTTFYLITTYLPTYLTQTLGL 252
Query: 298 -------CTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSG 350
++ + +T ++ + DR+GRR +L++ V+ AL + + L +SG
Sbjct: 253 SANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPL--LMALLDSG 310
Query: 351 SDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIA 399
S L + ++ + GP+ L E+FP++++ S+A
Sbjct: 311 SF-----TLFFFLVLGMALIGGMYTGPMGSFL-PELFPTEVRYTGASLA 353
Score = 29.5 bits (67), Expect = 3.7
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 318 DRLGRRILLLVSAVIMALSTLTMG 341
DR+GR+ L+++ ++M + TL +G
Sbjct: 60 DRIGRKKTLVITLLMMGIGTLLIG 83
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 50.9 bits (122), Expect = 8e-07
Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 31/165 (18%)
Query: 311 WIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIV 370
W+ +VD +GR+ + L+ I+ + +G+ + + +S G+L + L F
Sbjct: 353 WVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAY------NHLSTHGFLAIYVLAQF--- 403
Query: 371 FSLGFGP--IPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGA-- 426
F+ FGP +++ GE+FP++ + A I+ ++ F L L HG
Sbjct: 404 FA-NFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGF----LYLAQHGDPT 458
Query: 427 ------------FWIFSVIAALGAVFTYILVPETKGKTLDEIQME 459
IF++ LG +FT +L+PETKGK+L+E+ E
Sbjct: 459 KGYPTGIWMGHVLEIFALFMFLGILFT-LLIPETKGKSLEELSGE 502
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 44.2 bits (105), Expect = 1e-04
Identities = 90/419 (21%), Positives = 174/419 (41%), Gaps = 89/419 (21%)
Query: 78 SSMALGAVFGSPVVGNLVDTVGRKN----TMLLLAV--------PSFDI----RPLLGET 121
S +G + GS V G L D GRK + L+ AV P++ + R L+G
Sbjct: 134 SCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVG-M 192
Query: 122 SQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKE---------RKFE 172
+WV N F+ AI I L V+ R +
Sbjct: 193 GIGGIWVQAVVLNTE-----FLPKKQRAI-VGTLIQVFFSLGLVLLPLVAYFIPDWRWLQ 246
Query: 173 ASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYD---IDSE 229
+V + + LL +FV PESP++ + + R+++A + LQ R ++ + + +E
Sbjct: 247 LAVSLPTFLFFLL-SWFV------PESPRWLISQGRIEEALKILQ--RIAKINGKKLPAE 297
Query: 230 ITDMQNSLEKERSDKVP---LMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIF 286
+ + SLEK+ S + F TP ++ L + + F A +Y + +
Sbjct: 298 VLSL--SLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWF------TTAFSYYGLVLD 349
Query: 287 -KDAGSSLNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG---- 341
+ G ++ +L I G + + I +++DRLGRR + S ++ ++ L +
Sbjct: 350 LGNLGGNIYLDL--FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPV 407
Query: 342 YYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACL 401
++L+ + + + G F +V+ + E++P+ ++ + V +
Sbjct: 408 DLYFLRTALAVLGK-----FGITSAFQMVY---------LYTAELYPTVVRNLGVGVC-- 451
Query: 402 FNWVSVL--VVTKFFGDVTLLLGGHGAFW---IFSVIAALGAVFTYILVPETKGKTLDE 455
+ ++ + +++ F + LG F +F +A L + T + +PETKG L E
Sbjct: 452 -STMARVGSIISPFL----VYLGEKWLFLPLVLFGGLALLAGILT-LFLPETKGVPLPE 504
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 39.3 bits (92), Expect = 0.003
Identities = 34/166 (20%), Positives = 65/166 (39%), Gaps = 16/166 (9%)
Query: 301 IVGTIMMVTTWIATMI----VDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNI 356
++ T + +A + DR GRR +LL+ ++ AL L + + S++
Sbjct: 36 LLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLF----------ASSL 85
Query: 357 GWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGD 416
L + V + P L+ + FP + +G A+ + + + G
Sbjct: 86 WLLLVLR--VLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGL 143
Query: 417 VTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQMELGG 462
+ L G AF I +++A L AV +L+P ++ E
Sbjct: 144 LASLFGWRAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAP 189
Score = 32.8 bits (75), Expect = 0.41
Identities = 28/177 (15%), Positives = 59/177 (33%), Gaps = 15/177 (8%)
Query: 234 QNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL 293
E+ + VP + LL L F ++ V + L
Sbjct: 182 PKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGL 241
Query: 294 NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDV 353
L ++ ++ ++ DRLGRR LL++ +++ L+ L + +
Sbjct: 242 LLGLAGLLGAIGRLLLGRLS----DRLGRRRRLLLALLLLILAALGLAL----------L 287
Query: 354 SNIGWLPLGSLCVFIIVFSLGFGPIPWM-LVGEIFPSQIKGIAVSIACLFNWVSVLV 409
S + + ++ F G LV ++ P + +G A + + +
Sbjct: 288 SLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGAL 344
Score = 29.3 bits (66), Expect = 4.8
Identities = 9/44 (20%), Positives = 23/44 (52%)
Query: 22 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAV 65
++ +++ + ++ +LG P+ G L D GR+ +L+ +
Sbjct: 27 LGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLL 70
>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport
and metabolism].
Length = 498
Score = 39.2 bits (92), Expect = 0.004
Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 21/150 (14%)
Query: 246 PLMQAFSTPAAKRGLLIGLGVMFIQQFG--GINAV-VFYTVKIFKDAGSSLNPNLCTIIV 302
M+ F P RGL + V ++F G+ A+ + Y D G + T +
Sbjct: 12 LEMKFFGQP---RGLYLIFFVELWERFSYYGMRAILILYLYYQLGD-GLGFDETHATGLF 67
Query: 303 GT---IMMVTTWIATMIVDR-LGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGW 358
++ +T I + DR LG R +++ A++MA+ L + S VS G
Sbjct: 68 SAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAI--------SSVSGPGG 119
Query: 359 LPLGSLCVFIIVFSLGFGPIPWMLVGEIFP 388
L +G IIV + F P L+GE++P
Sbjct: 120 LYIGL--ALIIVGTGLFKPNISSLLGELYP 147
>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport
and metabolism].
Length = 417
Score = 38.4 bits (90), Expect = 0.008
Identities = 43/215 (20%), Positives = 70/215 (32%), Gaps = 25/215 (11%)
Query: 241 RSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNPNLCTI 300
R+ P + A L +++ FGG Y L +
Sbjct: 200 RASVKPQLPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVT-----QFGLSPV 254
Query: 301 IVGTIMMVTTWIATM-------IVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDV 353
G I + I + + DR+G R + L V MAL+ +
Sbjct: 255 TAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSL-------FLTG 307
Query: 354 SNIGWLPLGSLCVFIIVF---SLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVV 410
G + + VF+ +F LG G + + ++ IFP + G I + +
Sbjct: 308 FGHGGSFVVFVAVFLALFVFAGLGNGSV-FKMIPVIFPKET-GAVTGIVGAIGGLGGFFL 365
Query: 411 TKFFGDVTLLLGG-HGAFWIFSVIAALGAVFTYIL 444
FG L G GAF + + V T+ L
Sbjct: 366 PLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL 400
Score = 29.9 bits (68), Expect = 3.5
Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 18/133 (13%)
Query: 312 IATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFI-IV 370
+ DR G R ++S +++ + L + + + + S L +G L
Sbjct: 68 PYGFLTDRFGGRKWTILSMLLLLIPCLGLAF------AVTYPSTWQLLVIGLLLGLAGAS 121
Query: 371 FSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHG----A 426
F++G FP + +G+A+ IA N + V + + + G
Sbjct: 122 FAVGMP-----NASFFFPKEKQGLALGIAGAGN--LGVAVAQLVAPLVAVAFGFLAWRNV 174
Query: 427 FWIFSVIAALGAV 439
I+ V A+ AV
Sbjct: 175 AGIYVVALAIAAV 187
>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein. [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 365
Score = 36.9 bits (86), Expect = 0.022
Identities = 25/174 (14%), Positives = 51/174 (29%), Gaps = 23/174 (13%)
Query: 251 FSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNPNLCTIIVGTIMMVTT 310
P + LL+ L + + + K S + G ++
Sbjct: 207 LKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLG--RGSTHYGWVLAAFGLGALLGA 264
Query: 311 WIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIV 370
+ ++ R L+ + ++ L+ L +G PL + F I
Sbjct: 265 LLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTP------------PNFPLFLVLWFAIG 312
Query: 371 FSLGFGPIPWM-LVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGG 423
G +P L+ P+++ G F+ + L+L G
Sbjct: 313 VGYGPINVPQGTLLQRRVPAELLGRVFGA--QFSLSH------AAWPLGLILAG 358
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 36.4 bits (85), Expect = 0.027
Identities = 27/157 (17%), Positives = 59/157 (37%), Gaps = 22/157 (14%)
Query: 236 SLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGI---NAVVFYTVKIFKDAGSS 292
S+ E+ +KV L F R LLI L + + +++Y + +AG
Sbjct: 200 SVPPEQKEKVSLRDMFKALFKNRPLLILLLLYLLNALAMAVRNGLLLYYFTYVLGNAGLF 259
Query: 293 LNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSD 352
L I + + + R G++ L+ ++ A+ + + +F
Sbjct: 260 SVLLLIGTIAAILGAP---LWPWLAKRFGKKRTFLLGMLLAAIGLVLL--FF-------- 306
Query: 353 VSNIGWLPLGSLCVFIIVFSLGFG---PIPWMLVGEI 386
+ L V +++ +G G +PW ++ ++
Sbjct: 307 ---LPPGSLWLFLVLVVLAGIGLGLATLLPWAMLADV 340
Score = 34.5 bits (80), Expect = 0.12
Identities = 44/206 (21%), Positives = 72/206 (34%), Gaps = 32/206 (15%)
Query: 263 GLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNPNLCTIIVGTIMMV-------TTWIATM 315
LG I + FYT + A VGTI +V T I
Sbjct: 8 DLGNNIIYALLSTYLLYFYTDVLGLSAA----------AVGTIFLVARIWDAFTDPIVGA 57
Query: 316 IVDRLG-----RRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIV 370
I+DR R LL+ A+ +A+S + + F S + + + + + +
Sbjct: 58 IIDRTRTRWGKFRPWLLIGAIPLAISLVLL---FATPFGLSMTAKLIYA-FITYILLGLA 113
Query: 371 FSLGFGPIPWMLVGEI-FPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGG----HG 425
++ P W L+ + + + S + + L+V + LLGG G
Sbjct: 114 YTFVNIPY-WSLIPVLTRDPKERTSLASYRRIGATIGGLLVAVIAPPLVALLGGGNGAKG 172
Query: 426 AFWIFSVIAALGAVFTYILVPETKGK 451
F +IA L V I TK +
Sbjct: 173 YFLAALIIAILAVVGFLICFAGTKER 198
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 36.8 bits (86), Expect = 0.028
Identities = 31/149 (20%), Positives = 61/149 (40%), Gaps = 32/149 (21%)
Query: 324 ILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLV 383
LL SA+ + + +L G SG + +G +PLG+L + + +F L P ++
Sbjct: 273 YLLAASAIGIGIGSLLAGRL-----SGRHIE-LGLVPLGALGLALSLFLLPTAPSLASVL 326
Query: 384 GEIF---------------------PSQIKGIAVSIACLFNWVSVL---VVTKFFGDVTL 419
F P + G ++ V +L +T F L
Sbjct: 327 VLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLF--SGL 384
Query: 420 LLGGHGAFWIFSVIAALGAVFTYILVPET 448
L G F++ +++ +G ++T +L+P++
Sbjct: 385 GLSPAGLFYLIALVTLIGTLYTLLLLPDS 413
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 36.6 bits (85), Expect = 0.028
Identities = 32/146 (21%), Positives = 56/146 (38%), Gaps = 20/146 (13%)
Query: 306 MMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLC 365
M + DR+GRR +LL S ++ ++ TL ++V+ L
Sbjct: 65 MAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCAL-------ATNVT--------QLL 109
Query: 366 VFIIVFSLGFG---PIPWMLVGEIFPSQIKGIAVSI-ACLFNWVSVLVVTKFFGDVTLLL 421
+ + LG G P LV E P + +G AV + C + + V G + +
Sbjct: 110 ILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYP-IGAAVGGFLAGWLIPVF 168
Query: 422 GGHGAFWIFSVIAALGAVFTYILVPE 447
G F++ + L + +PE
Sbjct: 169 GWRSLFYVGGIAPLLLLLLLMRFLPE 194
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 35.8 bits (83), Expect = 0.045
Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 8/145 (5%)
Query: 301 IVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLP 360
IVG I M+ + D L RR LV A A+ G L ++ NI +
Sbjct: 262 IVGFIGMILGGR---LSDLLLRRGKSLVFARKTAI---IAGLVLSLLMFATNYVNIPYAA 315
Query: 361 LGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLL 420
L + + F LG G I W L+ + P I G+ + + +V G +
Sbjct: 316 LALVALGF--FGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAAT 373
Query: 421 LGGHGAFWIFSVIAALGAVFTYILV 445
G + AL +Y+L+
Sbjct: 374 TGSFAGALMVVAALALIGALSYLLL 398
Score = 33.5 bits (77), Expect = 0.23
Identities = 30/171 (17%), Positives = 55/171 (32%), Gaps = 21/171 (12%)
Query: 313 ATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFS 372
++DR G R L V VI + T + SL + ++
Sbjct: 49 GGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG---------------AYVSLYILRVLLG 93
Query: 373 LGFGP-IPW--MLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWI 429
P P ++V FP+ + AVSI + ++ G + + AF I
Sbjct: 94 AAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFII 153
Query: 430 FSVIAALGAVFTYILV---PETKGKTLDEIQMELGGNGESNENVMVVVDTK 477
V+ + V + P+ +E + + G + + K
Sbjct: 154 EGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPK 204
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 35.7 bits (83), Expect = 0.052
Identities = 25/130 (19%), Positives = 54/130 (41%), Gaps = 16/130 (12%)
Query: 261 LIGLGVMFIQQFGGIN----AVVFYTVKIFKDAGSSLNPNLCTIIVGTIMMVTTWIATMI 316
L+ L +M + F N +V+Y + D L L + G +++ + +
Sbjct: 238 LLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDP--ELFAYLLLLASGAGLLIGLILWPRL 295
Query: 317 VDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFG 376
V + G++ L L+ +++A+ L YF + L + +L + + +
Sbjct: 296 VKKFGKKKLFLIGLLLLAVGYL--LLYFT-------PAGSVVLIVVALIIAGVGTGI-AN 345
Query: 377 PIPWMLVGEI 386
P+PW +V +
Sbjct: 346 PLPWAMVADT 355
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 33.8 bits (78), Expect = 0.059
Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 14/138 (10%)
Query: 312 IATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVF 371
++ ++ DR GR+ +LLV I LST SNI L + F+ F
Sbjct: 17 LSGLLTDRFGRKPVLLVGLFIFVLSTAMFAL----------SSNITVL---IIARFLQGF 63
Query: 372 SLGFG-PIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIF 430
F L+ +I+P + +G+A+ + + L+ G + LG F
Sbjct: 64 GAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFL 123
Query: 431 SVIAALGAVFTYILVPET 448
+++A + L+PET
Sbjct: 124 AILALAAFILLAFLLPET 141
>gnl|CDD|233128 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter.
The Glycoside-Pentoside-Hexuronide (GPH):Cation
Symporter Family (TC 2.A.2) GPH:cation symporters
catalyze uptake of sugars in symport with a monovalent
cation (H+ or Na+). Members of this family includes
transporters for melibiose, lactose, raffinose,
glucuronides, pentosides and isoprimeverose. Mutants of
two groups of these symporters (the melibiose permeases
of enteric bacteria, and the lactose permease of
Streptococcus thermophilus) have been isolated in which
altered cation specificity is observed or in which sugar
transport is uncoupled from cation symport (i.e.,
uniport is catalyzed). The various members of the family
can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+
as the symported cation. All of these proteins possess
twelve putative transmembrane a-helical spanners
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 437
Score = 32.2 bits (74), Expect = 0.65
Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 25/160 (15%)
Query: 234 QNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAV----VFYTVKIFKDA 289
+ + K K+ L Q F LLI L + ++ N V+Y + D
Sbjct: 198 YSEIPKNIEKKLSLKQIFKALFKNDQLLI-LCLAYLFYNLAFNIKNGVQVYYFTYVLGD- 255
Query: 290 GSSLNPNLCTIIVGTIM---MVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYL 346
P L + + + ++ + +V + GR+IL ++M L L F+
Sbjct: 256 -----PELFSYMGSIAIGAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYL----IFFF 306
Query: 347 KNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEI 386
S + + + + + G + W LV +
Sbjct: 307 AGSNLPLILVL------IILAGFGQNFVTG-LVWALVADT 339
>gnl|CDD|213356 cd12822, TmCorA-like, Thermotoga maritima CorA-like family. This
family belongs to the MIT superfamily of essential
membrane proteins involved in transporting divalent
cations (uptake or efflux) across membranes. Members of
the Thermotoga maritima CorA_like family are found in
all three kingdoms of life. It is a functionally diverse
family, in addition to the CorA Co2+ transporter from
the hyperthermophilic Thermotoga maritima, it includes
three Saccharomyces cerevisiae members: two plasma
membrane proteins, the Mg2+ transporter Alr1p/Swc3p and
the putative Mg2+ transporter, Alr2p, and the vacuole
membrane protein Mnr2p, a putative Mg2+ transporter.
Thermotoga maritima CorA forms funnel-shaped
homopentamers, the tip of the funnel is formed from two
C-terminal transmembrane (TM) helices from each monomer,
and the large opening of the funnel from the N-terminal
cytoplasmic domains. The GMN signature motif of the MIT
superfamily occurs just after TM1, mutation within this
motif is known to abolish Mg2+ transport by Alr1p.
Natural variants in this signature sequence may be
associated with the transport of different divalent
cations. The functional diversity of the MIT superfamily
may also be due to minor structural differences
regulating gating, substrate selection, and transport.
Length = 289
Score = 31.8 bits (73), Expect = 0.65
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 301 IVGTIMMVTTWIAT---MIVDRLG---RRILLLVSAVIMALSTLTMGYYFYLKN 348
I+ TI + T+I M + + + IM L + ++F K
Sbjct: 234 IITTIFLPLTFITGIYGMNFEYMPELHWPYGYFIVLGIMLLIAGGLLWWFRRKK 287
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein.
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 379
Score = 32.0 bits (73), Expect = 0.73
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 17/104 (16%)
Query: 301 IVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLP 360
+VGT ++ W++ + + GRR L V MAL +++ Y+ L + + + ++
Sbjct: 266 LVGT--LLAGWLSDKLFN--GRRGPLAVFF--MALIIVSLLVYW-LNPAANPLMDL---- 314
Query: 361 LGSLCVFIIVFSLGFGPIP--WMLVGEIFPSQIKGIAVSIACLF 402
+C+F + F L +GP ++ E+ P + G A F
Sbjct: 315 ---ICLFALGF-LVYGPQMLIGVIASELAPKKAAGTAAGFVGFF 354
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 31.9 bits (72), Expect = 0.84
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 180 IICALLPIFFVGLMLLMPESPQFHLKKNRVKQA 212
I+CA +F +G + MPESP+F L+ + +A
Sbjct: 338 IVCAFPCVFAIGALTFMPESPRFFLENGKHDEA 370
Score = 31.1 bits (70), Expect = 1.5
Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 24/108 (22%)
Query: 301 IVGTIMMVTTWIATMIVDRLGRRILLLVS----AVIMALSTLTMGYYFYLKNSGSDVSNI 356
IV MMV + + D+LGR+ LL+ S+ GY F+L
Sbjct: 210 IVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFL---------- 259
Query: 357 GWLPLGSLCVFIIVFSLGFGPIPWML--VGEIFPSQIKGIAVSIACLF 402
C + F +G G IP + E + +G +S C+F
Sbjct: 260 -------FCRLLSGFGIG-GAIPIVFSYFAEFLAQEKRGEHLSWLCMF 299
Score = 28.8 bits (64), Expect = 9.0
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 68 VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLL-LAVPSF 112
+ +S +G + LG + G+ G L D +GRK +L+ L+V F
Sbjct: 199 IPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGF 244
Score = 28.4 bits (63), Expect = 9.7
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 15 LIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLL 62
L + E + +S +G + LG + G+ G L D +GRK +L+
Sbjct: 190 LPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLI 237
>gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional.
Length = 432
Score = 31.3 bits (71), Expect = 1.0
Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 23/144 (15%)
Query: 318 DRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGP 377
D++GRR +L + AL T+ L+N S + G L + I+ F +
Sbjct: 304 DKIGRRTSMLCFGSLAAL--FTVPILSALQNVSSPYAAFG---LVMCALLIVSF---YTS 355
Query: 378 IPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGD----VTLLLGGHGA----FWI 429
I +L E+FP+Q++ + V + S V FG V L L G FW
Sbjct: 356 ISGILKAEMFPAQVRALGVGL-------SYAVANALFGGSAEYVALSLKSIGMETAFFWY 408
Query: 430 FSVIAALGAVFTYILVPETKGKTL 453
+++A + + + +L + KG L
Sbjct: 409 VTLMAVVAFLVSLMLHRKGKGMRL 432
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 31.0 bits (71), Expect = 1.3
Identities = 28/145 (19%), Positives = 53/145 (36%), Gaps = 20/145 (13%)
Query: 306 MMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLC 365
+ + + ++ RL RR LLL + +S L + L L
Sbjct: 61 VALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSAL----------APSFAVLLLAR-- 108
Query: 366 VFIIVFSLG-FGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLV---VTKFFGDVTLLL 421
+ + G F I L + P +G A+++ ++ ++ + F G L
Sbjct: 109 -ALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ---LF 164
Query: 422 GGHGAFWIFSVIAALGAVFTYILVP 446
G F +V+A L + + L+P
Sbjct: 165 GWRATFLAIAVLALLALLLLWKLLP 189
>gnl|CDD|167814 PRK04425, PRK04425, Maf-like protein; Reviewed.
Length = 196
Score = 29.4 bits (66), Expect = 3.1
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 108 AVPSFDIRPLLGETSQVTVWVLISTTNRRISDKC----FVGSDHLAILCPISISQSRRLA 163
A P FD P+LGE++ T L R ++ + VG+D +A + LA
Sbjct: 30 ASPDFDETPMLGESAPQTALRLAEGKARSLTGRFPEALIVGADQVAWCDGRQWGKPMNLA 89
Query: 164 QVIK 167
K
Sbjct: 90 NAQK 93
>gnl|CDD|220468 pfam09913, DUF2142, Predicted membrane protein (DUF2142). This
domain, found in various hypothetical prokaryotic
proteins, has no known function.
Length = 390
Score = 30.0 bits (68), Expect = 3.2
Identities = 27/226 (11%), Positives = 66/226 (29%), Gaps = 32/226 (14%)
Query: 254 PAAKR-GLLIGLGVMFIQQFGGINA----------VVFYTVKIFKDAGSSLNPNLCTIIV 302
P K LL+ L M + Q ++ ++ +++ + + L +++
Sbjct: 144 PFGKALLLLVALLPMALFQAASLSPDGMIFALAFLLIALLLRLDESKKIT-RRLLILLLL 202
Query: 303 GTIMMVTT-----WIATMI----VDRLGRR-----ILLLVSAVIMALSTLTMG---YYFY 345
++++ + +A + + RR ILL VI L
Sbjct: 203 ASVLLALSKPPYVLLALLALLIPARKFSRRRLIGAILLAALFVIGIALFLRTVQSAPLIG 262
Query: 346 LKNSGSDVSNIGWLPLGSLCVFIIVF--SLGFGPIPWMLVGEIFPSQIKGIAVSIACLFN 403
+ D S L ++ +F ++ P + F
Sbjct: 263 GGATNVDFSAQLGYLLAHPLDYVRLFIRNVLSLPSVLAGQFISGGLGWLDTPLPSWLYFI 322
Query: 404 WVSVLVVTKFFGDVTLLL-GGHGAFWIFSVIAALGAVFTYILVPET 448
+ L++ F + + V+ + + + + T
Sbjct: 323 AIVALILLAFAALGAISKRLKRKILSLLLVLVIVILIPLALYLSWT 368
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 30.0 bits (68), Expect = 3.9
Identities = 13/59 (22%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 204 LKKNRVKQAKESLQWFRGSEYD-IDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLL 261
K+ ++ A+E L +E D + +EI +++ +E+ER + L + ++ + L
Sbjct: 312 EKERELEDAEERLAKLE-AEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDL 369
>gnl|CDD|191464 pfam06166, DUF979, Protein of unknown function (DUF979). This
family consists of several putative bacterial membrane
proteins. The function of this family is unclear.
Length = 308
Score = 29.1 bits (66), Expect = 4.4
Identities = 33/153 (21%), Positives = 63/153 (41%), Gaps = 21/153 (13%)
Query: 300 IIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYF-----YLKNSGSDVS 354
++ + ++ ++V +L+L A++ + +G Y + S +
Sbjct: 36 GLLALTFLFGDYLPAVVVG-----VLVLAMALLAGFGQVGIGKYKETSEEEREASAKRLG 90
Query: 355 NIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTK-- 412
N ++P + V I+ +L F +P + P + + I C+ V L++TK
Sbjct: 91 NKLFIPALIIPVVTIIGALLFTNLPL-----LDPKNGTLVGLGIGCVIALVLALIMTKAK 145
Query: 413 ---FFGDVTLLLGGHGAFWIFS-VIAALGAVFT 441
+ LL G I ++AALGAVFT
Sbjct: 146 PKQPVQEGRRLLDSVGWAAILPQLLAALGAVFT 178
>gnl|CDD|182109 PRK09848, PRK09848, glucuronide transporter; Provisional.
Length = 448
Score = 29.4 bits (66), Expect = 4.6
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 30 SFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGSP 89
+ +G V +P+V +V +G+KNT L+ A+ L F S +L +
Sbjct: 267 VLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVAL 326
Query: 90 VVGNLVDTVGRKNTMLLL 107
+ ++G+ TM ++
Sbjct: 327 AIA----SIGQGVTMTVM 340
>gnl|CDD|182834 PRK10914, PRK10914, dipeptide transporter permease DppB;
Provisional.
Length = 339
Score = 29.4 bits (66), Expect = 4.8
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 162 LAQVIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHL 204
LA V + F+ + GL++ +PIF+ G+ML+M S ++L
Sbjct: 120 LAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNL 162
>gnl|CDD|237958 PRK15403, PRK15403, multidrug efflux system protein MdtM;
Provisional.
Length = 413
Score = 29.4 bits (66), Expect = 5.1
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 307 MVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM 340
M W+ + DR+GRR +L+ A+I L+
Sbjct: 65 MALQWLLGPLSDRIGRRPVLITGALIFTLACAAT 98
>gnl|CDD|241451 cd13297, PH3_MyoX-like, Myosin X-like Pleckstrin homology (PH)
domain, repeat 3. MyoX, a MyTH-FERM myosin, is a
molecular motor that has crucial functions in the
transport and/or tethering of integrins in the
actin-based extensions known as filopodia, microtubule
binding, and in netrin-mediated axon guidance. It
functions as a dimer. MyoX walks on bundles of actin,
rather than single filaments, unlike the other
unconventional myosins. MyoX is present in organisms
ranging from humans to choanoflagellates, but not in
Drosophila and Caenorhabditis elegans.MyoX consists of a
N-terminal motor/head region, a neck made of 3 IQ
motifs, and a tail consisting of a coiled-coil domain, a
PEST region, 3 PH domains, a myosin tail homology 4
(MyTH4), and a FERM domain at its very C-terminus. The
first PH domain in the MyoX tail is a split-PH domain,
interupted by the second PH domain such that PH 1a and
PH 1b flanks PH 2. The third PH domain (PH 3) follows
the PH 1b domain. This cd contains the third MyoX PH
repeat. PLEKHH3/Pleckstrin homology (PH) domain
containing, family H (with MyTH4 domain) member 3 is
also part of this CD and like MyoX contains a FERM
domain, a MyTH4 domain, and a single PH domain. Not much
is known about the function of PLEKHH3. PH domains have
diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common
fold, which is electrostatically polarized. Less than
10% of PH domains bind phosphoinositide phosphates
(PIPs) with high affinity and specificity. PH domains
are distinguished from other PIP-binding domains by
their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2
or PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 123
Score = 27.7 bits (62), Expect = 6.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 345 YLKNSGSDVSNIGWLPLGSLC 365
Y K+S + +G L L SLC
Sbjct: 45 YYKSSERNALKLGSLVLNSLC 65
>gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional.
Length = 434
Score = 28.8 bits (65), Expect = 6.6
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 317 VDRLGRRILLLVSAVIMALSTLT 339
+DR+GRR L+V+ IMA TL
Sbjct: 80 IDRVGRRKGLIVTLSIMASGTLL 102
>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL;
Provisional.
Length = 392
Score = 28.8 bits (65), Expect = 7.2
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 306 MMVTTWIATMIVDRLGRRILLLVSAVIMALSTL 338
M A I DR GR+ + + A + +++L
Sbjct: 51 MAAAMLFAGKIADRSGRKPVAIPGAALFIIASL 83
>gnl|CDD|225700 COG3158, Kup, K+ transporter [Inorganic ion transport and
metabolism].
Length = 627
Score = 28.8 bits (65), Expect = 7.8
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 300 IIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWL 359
I V M++TT + T+++ + + LV+ +++ + + F+ N + + GWL
Sbjct: 374 IAVTGTMVITTILLTVVMRKKWKWRKWLVALILIVFLAIDIL--FFAANL-LKIHDGGWL 430
Query: 360 PLGSLCVFIIV 370
PL V V
Sbjct: 431 PLLLAAVIFFV 441
>gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated.
Length = 451
Score = 28.8 bits (65), Expect = 7.8
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 46 VVGNLVDTVGRKNTMLLLAVP-TVTESDLSFI 76
++G DTV N +L L+ P ++ +++FI
Sbjct: 408 IIGKNGDTVAGYNNVLTLSPPLVISSEEIAFI 439
>gnl|CDD|221312 pfam11916, Vac14_Fig4_bd, Vacuolar protein 14 C-terminal Fig4p
binding. Vac14 is a scaffold for the Fab1 kinase
complex, a complex that allows for the dynamic
interconversion of PI3P and PI(3,5)P2p (phosphoinositide
phosphate (PIP) lipids, that are generated transiently
on the cytoplasmic face of selected intracellular
membranes). This interconversion is regulated by at
least five proteins in yeast: the lipid kinase Fab1p,
lipid phosphatase Fig4p, the Fab1p activator Vac7p, the
Fab1p inhibitor Atg18p, and Vac14p, a protein required
for the activity of both Fab1p and Fig4p. The C-terminal
region of Vac14 binds to Fig4p. The full length Vac14 in
yeasts is likely to be a protein carrying a succession
of HEAT repeats, most of which have now degenerated.
This regulatory system is crucial for the proper
functioning of the mammalian nervous system.
Length = 181
Score = 27.9 bits (63), Expect = 8.9
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 191 GLMLLMPESPQFHLKKNRVK 210
GL++L+P+S F+ +NR++
Sbjct: 159 GLLMLLPQSTAFNTLRNRLQ 178
>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system;
Provisional.
Length = 377
Score = 28.3 bits (64), Expect = 9.2
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 415 GDVTLLLGGHGAFWIFSVIAALGAVFTYILVPET 448
G + + H FW+ ++ A L A + +PET
Sbjct: 136 GWLLVWFSWHAIFWVLALAAILAAALVFFFIPET 169
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.140 0.415
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,835,651
Number of extensions: 2516603
Number of successful extensions: 3318
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3238
Number of HSP's successfully gapped: 259
Length of query: 481
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 380
Effective length of database: 6,457,848
Effective search space: 2453982240
Effective search space used: 2453982240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (27.2 bits)