RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7924
(481 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 1e-05
Identities = 104/538 (19%), Positives = 153/538 (28%), Gaps = 211/538 (39%)
Query: 63 LAVPT---VTESDL--SFIGS------SMALGAVFGSPV---------VGNLVD--TVGR 100
L VPT S L F A +P V +LV+ VG+
Sbjct: 20 LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQ 79
Query: 101 KNTMLLLAVPSFDIRPLLG--------------ETSQVTVWVLISTTNRRISDKCFVGSD 146
+ +L L + F+ L G +T+ V LI K ++ +
Sbjct: 80 FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI---------KNYITAR 130
Query: 147 HLAILCPISISQSRRLAQVIKERKFEASVYGLSIICALLPIF---------FVGLMLLMP 197
+A P + L F A G + + A IF F L L
Sbjct: 131 IMAKR-PFDKKSNSAL--------FRAVGEGNAQLVA---IFGGQGNTDDYFEELRDLYQ 178
Query: 198 ESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEIT---DMQNSLEKERSDKVP----LMQA 250
L + +K + E+L + D + T ++ LE P L+
Sbjct: 179 TYH--VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP--SNTPDKDYLLSI 234
Query: 251 -FSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNP-NLCTIIVGTIMMV 308
S P LIG+ Q Y V K G P L + + G
Sbjct: 235 PISCP------LIGV-----IQL------AHYVV-TAKLLG--FTPGELRSYLKGATGHS 274
Query: 309 TTWIATMIVDRLGRRILLLVSAVIMALST----------LTMGYYFYLKNSGSDVSNIGW 358
LV+AV +A + + F+ IG
Sbjct: 275 QG----------------LVTAVAIAETDSWESFFVSVRKAITVLFF----------IGV 308
Query: 359 -----LPLGSLCVFIIVFSL--GFG-PIPWMLVGEIFPSQIKGI---------------- 394
P SL I+ SL G P P ML I +
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPSP-MLS-------ISNLTQEQVQDYVNKTNSHL 360
Query: 395 ----AVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAF----------------------- 427
V I+ L N LVV+ G L G +
Sbjct: 361 PAGKQVEIS-LVNGAKNLVVS---GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Query: 428 -WIFSVIAALGAVF-TYILVPETKGKTLDEIQMELGGNGES--NENVMV-VVDTKDGK 480
F + + F +++LVP D I +L N S +++ + V DT DG
Sbjct: 417 SNRFLPV---ASPFHSHLLVP-----ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466
Score = 36.6 bits (84), Expect = 0.024
Identities = 56/254 (22%), Positives = 86/254 (33%), Gaps = 84/254 (33%)
Query: 157 SQSR----------RLAQVIKER--KFEASVYGLSI--ICALLP----IFFVGLMLLMPE 198
SQ + + AQ + R YG SI I P I F G E
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGG------E 1679
Query: 199 SPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQ-AFSTPA-- 255
+ +++N E++ + I EI + S S+K L F+ PA
Sbjct: 1680 KGK-RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR-SEKGLLSATQFTQPALT 1737
Query: 256 ----A------KRGLL----------IG----L----GVMFIQQFGGINAV--VFY---T 282
A +GL+ +G L VM I+ V VFY T
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIES-----LVEVVFYRGMT 1792
Query: 283 VKIF--KDAGSSLNPNLCTIIVGTIMMVTTWIA-TMIVDRLGRRILLLVSAV-------- 331
+++ +D N + I G + + A +V+R+G+R LV V
Sbjct: 1793 MQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQ 1852
Query: 332 ------IMALSTLT 339
+ AL T+T
Sbjct: 1853 YVAAGDLRALDTVT 1866
Score = 33.9 bits (77), Expect = 0.16
Identities = 57/312 (18%), Positives = 98/312 (31%), Gaps = 97/312 (31%)
Query: 1 MGTILGWTSPA-------GDRLIAGEYPF----LV----TESDLSFIG-SSMALGAVFGS 44
MG L TS A D Y F +V + F G + + +
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 45 PVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNT- 103
+ +VD G+ T + + E S+ F S G L T + T
Sbjct: 1691 MIFETIVD--GKLKTEKIF--KEINEHSTSYT---------FRSEK-GLLSAT---QFTQ 1733
Query: 104 --MLLLAVPSF-DIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDH-L----AILCP-- 153
+ L+ +F D++ LI +D F G H L A+
Sbjct: 1734 PALTLMEKAAFEDLKS----------KGLIP------ADATFAG--HSLGEYAALASLAD 1775
Query: 154 -ISISQS------R-RLAQVIKER-KFEASVYGLSIICALLPIFFVGLMLLMPESPQFHL 204
+SI R QV R + S YG + A+ P G +
Sbjct: 1776 VMSIESLVEVVFYRGMTMQVAVPRDELGRSNYG---MIAINP----GRVAASFSQEAL-- 1826
Query: 205 KKNRVKQAKESLQWF--------RGSEY-------DIDSEITDMQNSLEKERSDKVPLMQ 249
+ V++ + W +Y +D +T++ N ++ ++ D + L +
Sbjct: 1827 -QYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALD-TVTNVLNFIKLQKIDIIELQK 1884
Query: 250 AFSTPAAKRGLL 261
+ S + L
Sbjct: 1885 SLSLEEVEGHLF 1896
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 45.4 bits (108), Expect = 3e-05
Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 10/143 (6%)
Query: 306 MMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLC 365
+ T + + D++ R M L T+ Y+ V I C
Sbjct: 301 GIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMI--------C 352
Query: 366 VFIIVFSL-GFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTK-FFGDVTLLLGG 423
+ +I F + G + + E+ P + G A LF ++ V G G
Sbjct: 353 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW 412
Query: 424 HGAFWIFSVIAALGAVFTYILVP 446
G F + + L + +++
Sbjct: 413 DGGFMVMIGGSILAVILLIVVMI 435
Score = 40.0 bits (94), Expect = 0.001
Identities = 26/140 (18%), Positives = 52/140 (37%), Gaps = 19/140 (13%)
Query: 315 MIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLG 374
+ DR R+ L ++ A L MG+ S+I + F+++F G
Sbjct: 84 SVSDRSNPRVFLPAGLILAAAVMLFMGF------VPWATSSIAVM-------FVLLFLCG 130
Query: 375 FG-----PIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGG-HGAFW 428
+ P + + + +G VS+ + V + F H A +
Sbjct: 131 WFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALY 190
Query: 429 IFSVIAALGAVFTYILVPET 448
+ + A L A+F + ++ +T
Sbjct: 191 MPAFCAILVALFAFAMMRDT 210
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
symport, sugar transport, transmembrane, formylation;
2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 36.1 bits (83), Expect = 0.021
Identities = 26/235 (11%), Positives = 71/235 (30%), Gaps = 34/235 (14%)
Query: 238 EKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYT--VKIFKDAGSSLNP 295
L A + + L V+ + + F F
Sbjct: 201 VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQG--- 257
Query: 296 NLCTIIVGTIMMVTT-------WIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKN 348
T + G + + + A +I++R+G + LL++ IM++ + +
Sbjct: 258 ---TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF------ 308
Query: 349 SGSDVSNIGWLPLGSLCVFIIVFSLGFG---PIPWMLVGEIFPSQIKGIAVSI-ACLFNW 404
+ + + + + F + + C F
Sbjct: 309 ---------ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQ 359
Query: 405 VSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQME 459
++++ ++ G++ +G GA+ + ++A + + + +L Q+
Sbjct: 360 LAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLRRQVN 414
Score = 27.6 bits (61), Expect = 9.7
Identities = 26/208 (12%), Positives = 52/208 (25%), Gaps = 23/208 (11%)
Query: 257 KRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNPNLCTIIVGTIMMVTTWIA--- 313
K G+ F F + A + D ++ G I + +
Sbjct: 5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDIN-----HISKSDTGIIFAAISLFSLLF 59
Query: 314 ----TMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFII 369
++ D+LG R LL M + + + ++ + +
Sbjct: 60 QPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNI---------LVGSIVG 110
Query: 370 VFSLGFGPIPWMLVGE-IFPSQIKGIAVSIACLFNWVSV-LVVTKFFGDVTLLLGGHGAF 427
LGF E + + V + + + F
Sbjct: 111 GIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVF 170
Query: 428 WIFSVIAALGAVFTYILVPETKGKTLDE 455
W+ S A + AV + +
Sbjct: 171 WLGSGCALILAVLLFFAKTDAPSSATVA 198
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.17
Identities = 56/358 (15%), Positives = 102/358 (28%), Gaps = 109/358 (30%)
Query: 87 GSPVVGNLVDTVGRKN-TMLLLAVPSFDIRPLLGETSQVTVWVLISTTNRRISDKCFVGS 145
+V V+ V R N L+ + + +P + I +R +D
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM------YIEQRDRLYNDN----- 123
Query: 146 DHLAILCPISISQSRRLAQVIKERKFEASVYGLSIICALL---PIFFVGL--ML------ 194
+ ++S RL +K R+ ALL P V + +L
Sbjct: 124 ---QVFAKYNVS---RLQPYLKLRQ------------ALLELRPAKNVLIDGVLGSGKTW 165
Query: 195 LMPESPQFHLKKNRVKQAKE-SLQWFRGSEYDIDSEITDMQNSL----------EKERSD 243
+ + +V+ + + W + + +M L + S
Sbjct: 166 VALDV----CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 244 KVP---------LMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLN 294
+ L + + + LL+ L V K + + N
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--------------QNAKAWN----AFN 263
Query: 295 PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGY---YF--YLKNS 349
+ C I ++TT + D L +S + TLT YL
Sbjct: 264 LS-CKI------LLTTRFKQ-VTDFLSAATTTHIS-LDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 350 GSDVSNIGWLP----LGS-LCVFIIVFSLGFGPIPWMLVGEIFPSQI-KGIAVSIACL 401
D LP + + II S+ G W + ++ I S+ L
Sbjct: 315 PQD------LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.24
Identities = 10/51 (19%), Positives = 14/51 (27%), Gaps = 25/51 (49%)
Query: 229 EITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVV 279
+ +Q SL+ D S PA L I A +
Sbjct: 21 ALKKLQASLKLYADD--------SAPA----L-------------AIKATM 46
>3rce_A Oligosaccharide transferase to N-glycosylate PROT;
oligosaccharyltransferase, membrane protein, helical
bundle, glycosylation, acceptor peptide, plasma
membrane; HET: PPN; 3.40A {Campylobacter lari}
Length = 724
Score = 30.8 bits (68), Expect = 1.1
Identities = 19/167 (11%), Positives = 51/167 (30%), Gaps = 11/167 (6%)
Query: 280 FYTVKIFKDAGSSLNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLT 339
T ++ S ++ + + +I ++A++ +++
Sbjct: 86 TLTYWLYSILPFSFE-SIILYMSTFFASLIVVPIILIAREYKLTTYGFIAALLGSIAN-- 142
Query: 340 MGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIA 399
Y+ SG +++ L L L + + I +L+ IF I + +
Sbjct: 143 --SYYNRTMSGYYDTDMLVLVLPMLILLTFIRLTINKDIFTLLLSPIF------IMIYLW 194
Query: 400 CLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVP 446
+ S+ + L+ + IA + + +
Sbjct: 195 WYPSSYSLNFAMIGLFGLYTLVFHRKEKIFYLAIALMIIALSMLAWQ 241
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
transporter; 3.50A {Escherichia coli}
Length = 375
Score = 28.4 bits (64), Expect = 5.6
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 12/71 (16%)
Query: 306 MMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLC 365
W A R + V ++A + + +F G + + +L
Sbjct: 248 AFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWF------------GVMNVWTLL 295
Query: 366 VFIIVFSLGFG 376
V +F G G
Sbjct: 296 VPAALFFFGAG 306
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon
merolae}
Length = 632
Score = 28.2 bits (63), Expect = 7.1
Identities = 10/84 (11%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Query: 393 GIAVS-IACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILV----PE 447
G+ + + +V + + ++ L G + ++ V + + E
Sbjct: 18 GVTAALFIFAVDL-AVHGLEELRMKISRLAGRFAGYILYVVSGVALCLLSTFWCAVLSTE 76
Query: 448 TKGKTLDEIQMELGGNGESNENVM 471
+G L +++ L G + + +
Sbjct: 77 AEGSGLPQMKSILSGFYDKMRSAL 100
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.140 0.415
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,237,249
Number of extensions: 442907
Number of successful extensions: 797
Number of sequences better than 10.0: 1
Number of HSP's gapped: 789
Number of HSP's successfully gapped: 28
Length of query: 481
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 384
Effective length of database: 3,993,456
Effective search space: 1533487104
Effective search space used: 1533487104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.7 bits)