RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7924
(481 letters)
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
coli [TaxId: 562]}
Length = 447
Score = 65.9 bits (159), Expect = 3e-12
Identities = 52/439 (11%), Positives = 121/439 (27%), Gaps = 52/439 (11%)
Query: 22 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMA 81
+ DL F S +++ F ++G++ D + + +
Sbjct: 54 QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPA----------------GLI 97
Query: 82 LGAVFGSPVVGNLVDTVGRKNTMLLLAVPSFDIRPLLGETSQVTVWVLISTTNRRISDKC 141
L A + T +LL + + + +
Sbjct: 98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGW-----FQGMGWPPCGRTMVHWWSQKERGG 152
Query: 142 FVGSDHLAILCPISISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQ 201
V + A I L + + A++Y + L+ +F +M P+S
Sbjct: 153 IVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCG 212
Query: 202 FHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLL 261
+ + + ++ Q F LL
Sbjct: 213 LPPIEEYKNDYPDDYNE---------------------KAEQELTAKQIFMQYVLPNKLL 251
Query: 262 IGLGVMFIQQFGGINAVVFYTVKIFKDAG--SSLNPNLCTIIVGTIMMVTTWIATMIVDR 319
+ + + + ++ ++ K+ + + + + T + + D+
Sbjct: 252 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK 311
Query: 320 LGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIP 379
+ R M L T+ Y+ V I + +G G +
Sbjct: 312 VFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG-------FLIYGPVMLI 364
Query: 380 WMLVGEIFPSQIKGIAVSIACLFNWV-SVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGA 438
+ E+ P + G A LF ++ + + G G G F + + L
Sbjct: 365 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAV 424
Query: 439 VFTYILVPETKGKTLDEIQ 457
+ +++ K + +Q
Sbjct: 425 ILLIVVMIGEKRRHEQLLQ 443
Score = 37.4 bits (85), Expect = 0.004
Identities = 26/189 (13%), Positives = 61/189 (32%), Gaps = 9/189 (4%)
Query: 260 LLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNPNLCTIIVGTIMMVTTWIATMIVDR 319
+ +G+ + + + + S + + + +I + DR
Sbjct: 26 IFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDR 85
Query: 320 LGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIP 379
R+ L ++ A L MG+ + +S + L F P
Sbjct: 86 SNPRVFLPAGLILAAAVMLFMGFVPWATSS--------IAVMFVLLFLCGWFQGMGWPPC 137
Query: 380 WMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFG-DVTLLLGGHGAFWIFSVIAALGA 438
+ + + +G VS+ + V + F + H A ++ + A L A
Sbjct: 138 GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVA 197
Query: 439 VFTYILVPE 447
+F + ++ +
Sbjct: 198 LFAFAMMRD 206
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
562]}
Length = 417
Score = 47.5 bits (111), Expect = 2e-06
Identities = 51/435 (11%), Positives = 118/435 (27%), Gaps = 63/435 (14%)
Query: 24 VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALG 83
+++SD I ++++L ++ P+ G L D +G + +L + + FI
Sbjct: 40 ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP-- 97
Query: 84 AVFGSPVVGNLVDTVGRKNTMLLLAVPSFDIRPLLGETSQVTVWVLISTTNRRISDKCFV 143
LL + G I
Sbjct: 98 ----------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRR 135
Query: 144 GSDHLAILCPISISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFH 203
+ A ++ + + + I V L ++P
Sbjct: 136 SNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSA 195
Query: 204 LKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIG 263
N V + ++ F P L
Sbjct: 196 TVANAVGANHSAFSLKL--------------------------ALELFRQPKLWFLSLYV 229
Query: 264 LGVMFIQQFGGINAVVFYTVKIFKDAGSSLNPNLCTIIVGTIMMVTTWIATMIVDRLGRR 323
+GV F+T + T + + + A +I++R+G +
Sbjct: 230 IGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK 289
Query: 324 ILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLV 383
LL++ IM++ + + L + L + + +
Sbjct: 290 NALLLAGTIMSVRIIGSSFATS------------ALEVVILKTLHMFEVPFLLVGCFKYI 337
Query: 384 GEIFPSQIKGIAVSIA-CLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTY 442
F + + C F ++++ ++ G++ +G GA+ + ++A + +
Sbjct: 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISV 397
Query: 443 ILVPETKGKTLDEIQ 457
+ +L Q
Sbjct: 398 FTLSGPGPLSLLRRQ 412
>d1h4ax1 b.11.1.1 (X:1-85) gamma-Crystallin {Human (Homo sapiens),
isoform D [TaxId: 9606]}
Length = 85
Score = 27.0 bits (60), Expect = 1.4
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 219 FRGSEYDIDSEITDMQNSLEKERSDKVP 246
F+G Y+ S+ ++Q L + S +V
Sbjct: 11 FQGRHYECSSDHPNLQPYLSRCNSARVD 38
>d2zkda1 b.122.1.12 (A:405-613) E3 ubiquitin-protein ligase UHRF1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 209
Score = 26.8 bits (59), Expect = 4.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 362 GSLCVFIIVFSLGFGPIPWMLVGEIFPSQI 391
G IV + FGPIP + VG ++ ++
Sbjct: 6 GRTTECTIVPANHFGPIPGVPVGTMWRFRV 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.140 0.415
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,713,608
Number of extensions: 77549
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 15
Length of query: 481
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 392
Effective length of database: 1,185,626
Effective search space: 464765392
Effective search space used: 464765392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.5 bits)