BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7925
         (472 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3GI9|C Chain C, Crystal Structure Of Apct Transporter Bound To 7f11
           Monoclonal Fab Fragment
 pdb|3GIA|A Chain A, Crystal Structure Of Apct Transporter
          Length = 444

 Score = 32.3 bits (72), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 4/119 (3%)

Query: 37  FYSGLF--AYNGWNYLNFIIEELKDPIVNLPRAIYISCXXXXXXXXXXXXAFYTTLSPAE 94
           F S +F  +Y G+  +    E +++P  N+PRAI+IS             +    L   E
Sbjct: 192 FASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDE 251

Query: 95  VLNSEAVAVTFANRIF-GPIAWTLPVFVAL-STFGGVNGIILTTSRLFYAGACEGQMPE 151
           ++ +   A+  A + F G + + L    AL S    +N  I   + + Y+ A +G++PE
Sbjct: 252 LIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPE 310


>pdb|3GI8|C Chain C, Crystal Structure Of Apct K158a Transporter Bound To 7f11
           Monoclonal Fab Fragment
          Length = 444

 Score = 32.3 bits (72), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 4/119 (3%)

Query: 37  FYSGLF--AYNGWNYLNFIIEELKDPIVNLPRAIYISCXXXXXXXXXXXXAFYTTLSPAE 94
           F S +F  +Y G+  +    E +++P  N+PRAI+IS             +    L   E
Sbjct: 192 FASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDE 251

Query: 95  VLNSEAVAVTFANRIF-GPIAWTLPVFVAL-STFGGVNGIILTTSRLFYAGACEGQMPE 151
           ++ +   A+  A + F G + + L    AL S    +N  I   + + Y+ A +G++PE
Sbjct: 252 LIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPE 310


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.140    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,406,183
Number of Sequences: 62578
Number of extensions: 454512
Number of successful extensions: 960
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 960
Number of HSP's gapped (non-prelim): 2
length of query: 472
length of database: 14,973,337
effective HSP length: 102
effective length of query: 370
effective length of database: 8,590,381
effective search space: 3178440970
effective search space used: 3178440970
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)