Query psy7925
Match_columns 472
No_of_seqs 155 out of 1687
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 22:23:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7925.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7925hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1287|consensus 100.0 1.1E-38 2.4E-43 334.7 21.3 276 3-461 172-452 (479)
2 TIGR00911 2A0308 L-type amino 100.0 2.3E-31 4.9E-36 285.4 29.0 252 23-457 227-478 (501)
3 PRK11357 frlA putative fructos 100.0 2.8E-30 6.1E-35 272.8 26.7 242 29-453 193-439 (445)
4 TIGR00906 2A0303 cationic amin 100.0 1.6E-29 3.5E-34 275.0 28.8 142 28-169 228-369 (557)
5 TIGR00908 2A0305 ethanolamine 100.0 3.4E-29 7.4E-34 264.2 28.3 244 29-453 189-434 (442)
6 PRK10655 potE putrescine trans 100.0 2.4E-28 5.2E-33 257.5 29.1 235 30-452 188-431 (438)
7 TIGR00909 2A0306 amino acid tr 100.0 7.2E-28 1.6E-32 252.6 27.4 236 27-447 191-428 (429)
8 PRK11387 S-methylmethionine tr 100.0 2.1E-27 4.6E-32 253.1 27.2 138 28-166 203-341 (471)
9 PRK10644 arginine:agmatin anti 100.0 9.9E-27 2.1E-31 246.0 30.2 237 28-453 188-432 (445)
10 PRK15049 L-asparagine permease 100.0 1.5E-26 3.3E-31 248.6 30.5 130 28-157 217-347 (499)
11 TIGR00905 2A0302 transporter, 100.0 1.8E-26 3.9E-31 246.1 29.0 237 29-453 197-440 (473)
12 TIGR00913 2A0310 amino acid pe 100.0 2.6E-26 5.7E-31 244.6 28.3 127 30-156 196-332 (478)
13 PRK10197 gamma-aminobutyrate t 99.9 6.1E-26 1.3E-30 240.5 29.0 247 27-457 177-437 (446)
14 PRK10836 lysine transporter; P 99.9 5.3E-26 1.2E-30 243.5 27.8 129 29-157 203-340 (489)
15 PRK10746 putative transport pr 99.9 2E-25 4.4E-30 237.7 28.7 139 28-167 197-336 (461)
16 PRK11049 D-alanine/D-serine/gl 99.9 1.5E-25 3.2E-30 239.0 27.4 130 28-157 208-338 (469)
17 TIGR00910 2A0307_GadC glutamat 99.9 4.1E-25 8.8E-30 238.1 29.1 123 302-425 288-425 (507)
18 TIGR03813 put_Glu_GABA_T putat 99.9 6.1E-25 1.3E-29 234.3 30.1 118 307-425 291-422 (474)
19 PRK11021 putative transporter; 99.9 5.1E-25 1.1E-29 230.5 27.8 124 27-150 173-297 (410)
20 TIGR03810 arg_ornith_anti argi 99.9 6.8E-25 1.5E-29 233.7 28.6 233 30-452 194-434 (468)
21 PRK10249 phenylalanine transpo 99.9 6.4E-25 1.4E-29 233.5 28.1 211 28-422 206-427 (458)
22 PRK10435 cadB lysine/cadaverin 99.9 1.1E-24 2.5E-29 229.9 28.5 130 28-157 184-314 (435)
23 TIGR01773 GABAperm gamma-amino 99.9 8E-25 1.7E-29 231.8 27.3 130 28-157 198-329 (452)
24 PRK10238 aromatic amino acid t 99.9 1.9E-24 4.2E-29 229.7 28.3 131 27-157 196-327 (456)
25 PRK10580 proY putative proline 99.9 1E-24 2.3E-29 231.5 26.0 140 27-167 195-335 (457)
26 TIGR00907 2A0304 amino acid pe 99.9 1.5E-23 3.2E-28 223.8 23.8 117 302-419 310-436 (482)
27 COG0833 LysP Amino acid transp 99.9 2.8E-23 6.2E-28 219.9 23.2 236 3-422 197-463 (541)
28 COG0531 PotE Amino acid transp 99.9 1.5E-22 3.3E-27 212.8 27.1 197 28-406 198-401 (466)
29 KOG1286|consensus 99.9 6E-23 1.3E-27 222.2 21.5 136 28-164 229-370 (554)
30 TIGR00930 2a30 K-Cl cotranspor 99.9 2.6E-22 5.5E-27 229.4 26.5 155 298-458 388-546 (953)
31 PRK15238 inner membrane transp 99.9 2.4E-21 5.3E-26 207.9 29.4 103 300-404 320-431 (496)
32 COG1113 AnsP Gamma-aminobutyra 99.9 2.1E-22 4.6E-27 209.6 19.9 148 3-150 164-323 (462)
33 PF13520 AA_permease_2: Amino 99.9 3.5E-21 7.5E-26 201.3 23.8 210 28-425 185-405 (426)
34 TIGR03428 ureacarb_perm permea 99.9 1.9E-20 4.1E-25 200.0 28.3 102 305-406 306-420 (475)
35 PF00324 AA_permease: Amino ac 99.9 3.1E-23 6.8E-28 221.1 4.3 186 29-396 198-394 (478)
36 KOG1289|consensus 99.8 2.3E-18 5E-23 182.5 19.2 237 28-448 249-509 (550)
37 KOG1287|consensus 99.6 4.4E-15 9.6E-20 157.0 14.9 206 186-419 196-406 (479)
38 PRK10655 potE putrescine trans 99.6 1E-13 2.3E-18 146.3 17.4 88 211-311 196-287 (438)
39 PRK11387 S-methylmethionine tr 99.5 9.9E-14 2.1E-18 148.2 12.0 226 211-450 213-457 (471)
40 PRK10644 arginine:agmatin anti 99.5 5.9E-13 1.3E-17 141.1 16.9 90 212-314 199-292 (445)
41 TIGR03810 arg_ornith_anti argi 99.5 1.1E-12 2.3E-17 140.2 17.6 104 210-327 201-309 (468)
42 TIGR00905 2A0302 transporter, 99.5 8.4E-13 1.8E-17 141.2 16.0 223 211-456 206-440 (473)
43 PRK10435 cadB lysine/cadaverin 99.4 3.5E-12 7.6E-17 135.0 15.8 218 211-452 194-427 (435)
44 TIGR00906 2A0303 cationic amin 99.4 1.2E-11 2.5E-16 135.4 18.2 170 212-395 239-412 (557)
45 PRK10580 proY putative proline 99.4 6.6E-12 1.4E-16 133.6 14.2 224 211-448 206-446 (457)
46 PRK11049 D-alanine/D-serine/gl 99.3 5.6E-12 1.2E-16 134.8 12.9 197 210-420 217-429 (469)
47 TIGR03813 put_Glu_GABA_T putat 99.3 3.7E-11 8E-16 128.5 17.9 58 214-284 204-261 (474)
48 PRK15049 L-asparagine permease 99.3 9.1E-12 2E-16 134.4 12.9 203 212-428 228-445 (499)
49 TIGR01773 GABAperm gamma-amino 99.3 8.8E-12 1.9E-16 132.4 11.9 223 211-447 208-447 (452)
50 PRK11021 putative transporter; 99.3 9.3E-12 2E-16 130.6 11.7 189 211-422 184-381 (410)
51 KOG2082|consensus 99.3 3.1E-11 6.6E-16 131.1 14.2 148 303-457 502-653 (1075)
52 PRK10746 putative transport pr 99.3 1.9E-11 4.2E-16 130.6 12.5 228 212-453 208-453 (461)
53 PRK10197 gamma-aminobutyrate t 99.2 5.1E-11 1.1E-15 126.7 12.1 99 210-321 187-290 (446)
54 PRK10249 phenylalanine transpo 99.2 1.7E-11 3.8E-16 130.7 7.9 70 210-292 215-284 (458)
55 TIGR00913 2A0310 amino acid pe 99.2 9.3E-11 2E-15 125.3 12.7 234 209-456 202-468 (478)
56 PRK10238 aromatic amino acid t 99.2 4.1E-11 8.8E-16 127.8 9.6 196 213-422 209-418 (456)
57 KOG1288|consensus 99.2 9.2E-10 2E-14 119.1 17.0 204 30-419 293-498 (945)
58 PF13520 AA_permease_2: Amino 99.2 5.9E-10 1.3E-14 116.8 15.3 85 211-310 195-286 (426)
59 PRK10836 lysine transporter; P 99.1 1.1E-10 2.4E-15 125.5 9.3 219 214-446 215-461 (489)
60 KOG1286|consensus 99.1 1.7E-10 3.7E-15 125.7 10.7 170 211-394 239-423 (554)
61 TIGR00796 livcs branched-chain 99.1 1.6E-08 3.6E-13 105.7 23.0 103 31-133 174-289 (378)
62 TIGR00837 araaP aromatic amino 99.0 5.2E-08 1.1E-12 101.2 20.8 109 28-137 175-292 (381)
63 TIGR00908 2A0305 ethanolamine 98.6 2E-06 4.4E-11 91.1 18.9 130 36-170 199-332 (442)
64 TIGR03428 ureacarb_perm permea 98.6 3.9E-07 8.5E-12 97.7 13.4 54 211-277 220-273 (475)
65 COG1113 AnsP Gamma-aminobutyra 98.5 1.4E-07 3E-12 99.5 7.3 180 213-406 212-403 (462)
66 COG0833 LysP Amino acid transp 98.5 9.1E-08 2E-12 102.7 5.5 112 210-334 240-363 (541)
67 TIGR00910 2A0307_GadC glutamat 98.4 1.6E-05 3.5E-10 86.4 20.6 140 32-172 195-340 (507)
68 TIGR00909 2A0306 amino acid tr 98.4 6.4E-06 1.4E-10 86.8 17.0 143 25-172 192-337 (429)
69 TIGR00911 2A0308 L-type amino 98.4 1.1E-05 2.3E-10 87.2 18.4 48 122-169 326-373 (501)
70 PRK11357 frlA putative fructos 98.4 1.8E-06 3.8E-11 91.7 11.6 53 120-172 287-339 (445)
71 TIGR00907 2A0304 amino acid pe 98.2 1.7E-05 3.7E-10 85.2 13.5 142 31-172 217-365 (482)
72 TIGR00930 2a30 K-Cl cotranspor 98.1 0.00035 7.5E-09 81.4 22.4 140 31-171 280-446 (953)
73 COG0531 PotE Amino acid transp 97.9 0.0002 4.4E-09 75.5 15.6 144 25-172 198-345 (466)
74 KOG2083|consensus 97.8 3.3E-05 7.1E-10 83.7 7.1 139 302-446 321-463 (643)
75 PRK15238 inner membrane transp 97.6 0.0017 3.6E-08 70.3 16.8 140 31-171 211-373 (496)
76 TIGR00912 2A0309 spore germina 97.6 0.00063 1.4E-08 70.1 12.2 114 27-141 174-293 (359)
77 PF00324 AA_permease: Amino ac 97.3 6.4E-05 1.4E-09 80.6 0.8 64 209-285 205-268 (478)
78 KOG1289|consensus 97.0 0.00086 1.9E-08 72.6 5.3 67 213-292 261-331 (550)
79 TIGR00814 stp serine transport 96.9 0.021 4.5E-07 60.5 14.4 118 28-145 183-312 (397)
80 PF03222 Trp_Tyr_perm: Tryptop 96.8 0.36 7.7E-06 51.1 23.4 116 25-140 178-301 (394)
81 TIGR00912 2A0309 spore germina 96.4 1.4 2.9E-05 45.4 23.8 101 212-326 187-295 (359)
82 PHA02764 hypothetical protein; 95.8 0.033 7.2E-07 57.0 8.0 180 32-274 182-361 (399)
83 PRK15132 tyrosine transporter 95.7 3 6.4E-05 44.5 22.8 111 32-142 182-300 (403)
84 TIGR00837 araaP aromatic amino 95.7 0.12 2.7E-06 53.6 12.1 163 219-406 192-369 (381)
85 COG0814 SdaC Amino acid permea 94.7 3.3 7.2E-05 44.2 19.6 67 27-93 189-256 (415)
86 PF03845 Spore_permease: Spore 93.3 2.2 4.8E-05 43.3 14.5 116 26-142 170-290 (320)
87 PRK10483 tryptophan permease; 93.3 14 0.0003 39.7 22.2 112 30-141 191-310 (414)
88 PF13906 AA_permease_C: C-term 92.6 0.16 3.5E-06 38.3 3.7 47 402-452 1-50 (51)
89 PF02705 K_trans: K+ potassium 92.3 3.3 7.2E-05 45.7 14.7 105 285-389 263-372 (534)
90 PRK09664 tryptophan permease T 91.9 20 0.00044 38.4 22.3 107 31-137 193-307 (415)
91 KOG1304|consensus 91.8 3.1 6.6E-05 44.9 13.4 63 28-91 238-303 (449)
92 KOG1303|consensus 91.7 1 2.2E-05 48.6 9.8 58 34-92 231-288 (437)
93 TIGR00796 livcs branched-chain 88.4 6 0.00013 41.9 12.1 155 228-410 206-370 (378)
94 KOG1288|consensus 87.9 1.4 3.1E-05 49.5 7.2 97 222-333 312-408 (945)
95 PRK13629 threonine/serine tran 87.0 48 0.0011 35.9 18.1 115 31-145 209-347 (443)
96 COG3949 Uncharacterized membra 85.2 52 0.0011 34.4 17.8 62 45-109 193-254 (349)
97 PLN03074 auxin influx permease 85.2 2 4.3E-05 46.7 6.7 64 28-92 230-293 (473)
98 PHA02764 hypothetical protein; 84.0 4 8.7E-05 42.3 7.8 29 317-347 257-285 (399)
99 PLN00149 potassium transporter 83.9 18 0.00039 41.7 13.6 109 268-377 317-430 (779)
100 PF05525 Branch_AA_trans: Bran 82.9 74 0.0016 34.3 24.4 107 255-376 229-340 (427)
101 PLN00151 potassium transporter 81.9 22 0.00048 41.2 13.3 94 284-377 405-503 (852)
102 PF01490 Aa_trans: Transmembra 81.8 0.52 1.1E-05 48.9 0.5 64 28-91 189-254 (409)
103 PRK15433 branched-chain amino 81.5 85 0.0018 34.1 18.9 74 253-326 231-309 (439)
104 KOG2082|consensus 81.4 0.85 1.9E-05 51.6 2.0 66 172-243 371-449 (1075)
105 TIGR00794 kup potassium uptake 81.2 20 0.00043 40.9 12.6 99 285-383 300-403 (688)
106 PLN00148 potassium transporter 80.7 23 0.00051 40.8 13.0 92 285-376 329-425 (785)
107 PLN00150 potassium ion transpo 80.4 21 0.00046 41.1 12.5 94 284-377 345-443 (779)
108 KOG1305|consensus 78.4 1E+02 0.0022 33.1 17.8 64 29-92 192-256 (411)
109 PRK10745 trkD potassium transp 78.3 21 0.00045 40.2 11.4 94 285-378 274-372 (622)
110 PTZ00206 amino acid transporte 76.1 4.3 9.3E-05 43.9 5.4 60 32-91 257-317 (467)
111 TIGR00814 stp serine transport 75.1 16 0.00034 38.9 9.2 103 212-327 194-311 (397)
112 PF03222 Trp_Tyr_perm: Tryptop 73.0 1.3E+02 0.0029 31.8 18.6 45 102-146 67-112 (394)
113 COG1114 BrnQ Branched-chain am 70.3 1.6E+02 0.0035 31.7 17.8 69 255-325 231-306 (431)
114 COG3158 Kup K+ transporter [In 68.8 27 0.00059 38.8 9.2 59 318-376 312-375 (627)
115 PTZ00206 amino acid transporte 60.7 2.5E+02 0.0054 30.4 21.0 52 102-153 123-175 (467)
116 PRK15132 tyrosine transporter 58.7 1.6E+02 0.0035 31.4 12.8 37 233-282 210-246 (403)
117 PF05525 Branch_AA_trans: Bran 56.8 1.1E+02 0.0025 32.9 11.3 87 58-144 218-306 (427)
118 PRK13629 threonine/serine tran 47.5 2.4E+02 0.0052 30.7 11.9 82 234-328 249-347 (443)
119 PRK11375 allantoin permease; P 42.7 4.8E+02 0.01 28.4 21.1 45 31-76 227-272 (484)
120 PF01102 Glycophorin_A: Glycop 37.7 39 0.00084 30.2 3.5 12 444-455 84-95 (122)
121 PRK10483 tryptophan permease; 35.8 5.9E+02 0.013 27.4 13.2 36 234-282 222-257 (414)
122 PF11174 DUF2970: Protein of u 35.2 1E+02 0.0022 23.7 5.0 43 34-79 2-44 (56)
123 TIGR00835 agcS amino acid carr 34.6 2.8E+02 0.006 30.0 10.0 108 36-144 251-365 (425)
124 PF10754 DUF2569: Protein of u 32.7 3.8E+02 0.0082 24.3 11.7 21 294-314 6-28 (149)
125 PRK15433 branched-chain amino 32.4 2.8E+02 0.0061 30.1 9.6 88 56-143 217-309 (439)
126 PF01235 Na_Ala_symp: Sodium:a 28.8 2E+02 0.0044 31.0 7.8 109 36-144 224-338 (416)
127 COG1115 AlsT Na+/alanine sympo 28.7 3.6E+02 0.0079 29.4 9.5 115 32-146 264-384 (452)
128 PF13194 DUF4010: Domain of un 28.5 2.7E+02 0.0059 27.0 8.0 12 389-400 43-54 (211)
129 PF06570 DUF1129: Protein of u 27.1 5.5E+02 0.012 24.4 12.5 16 439-454 185-200 (206)
130 PF14256 YwiC: YwiC-like prote 27.1 4.6E+02 0.0099 23.4 9.5 15 380-394 37-51 (129)
131 PRK15419 proline:sodium sympor 27.0 8.4E+02 0.018 26.5 13.3 24 300-323 330-353 (502)
132 PF09925 DUF2157: Predicted me 25.2 5E+02 0.011 23.2 9.5 29 363-391 53-81 (145)
133 COG4025 Predicted membrane pro 21.9 3.8E+02 0.0083 26.8 7.5 15 319-333 56-70 (284)
134 COG3949 Uncharacterized membra 21.2 6.5E+02 0.014 26.5 9.4 77 249-326 33-110 (349)
135 COG2271 UhpC Sugar phosphate p 21.0 9.7E+02 0.021 26.2 11.0 30 307-336 67-96 (448)
136 PRK10654 dcuC C4-dicarboxylate 20.4 9.7E+02 0.021 26.1 11.1 46 317-362 87-132 (455)
137 PTZ00370 STEVOR; Provisional 20.3 1.6E+02 0.0035 30.1 4.8 25 432-457 262-286 (296)
No 1
>KOG1287|consensus
Probab=100.00 E-value=1.1e-38 Score=334.65 Aligned_cols=276 Identities=50% Similarity=0.910 Sum_probs=249.7
Q ss_pred hhhhhHHHHHhhc-CCCcccc---ccCCCCChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHH
Q psy7925 3 YVVQIMIGVANIF-GETKYFT---FENSTTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVV 78 (472)
Q Consensus 3 ~~~~i~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~ 78 (472)
.+++++.|++... ++++|+. |+|+.++.+.+.+++++++|+|+|||+.++.+||+|||+||+|||+..++.++++.
T Consensus 172 l~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktLP~Ai~isi~lvt~i 251 (479)
T KOG1287|consen 172 LLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPRAILISIPLVTVI 251 (479)
T ss_pred HHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccccchHHHHHhhHHHHHH
Confidence 4678888999777 7777654 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccChhhhhcchhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccC
Q psy7925 79 YVLTNVAFYTTLSPAEVLNSEAVAVTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQV 158 (472)
Q Consensus 79 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~ 158 (472)
|+++++++..++++||+.++++++.+++++.+|..++.+++.+++|++|++|+.++..||+++++||||++|+.|+++|+
T Consensus 252 Yil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~ 331 (479)
T KOG1287|consen 252 YVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFAWAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISV 331 (479)
T ss_pred HHHhHhheeEecCHHHhcccchHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888888887774
Q ss_pred CCCCchhHHHHhhhccCCcchhHhHhhhccCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccc
Q psy7925 159 TKMTPTPAVLTIVTCEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLP 238 (472)
Q Consensus 159 ~~~tP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip 238 (472)
++.
T Consensus 332 ~~~----------------------------------------------------------------------------- 334 (479)
T KOG1287|consen 332 RRF----------------------------------------------------------------------------- 334 (479)
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 444
Q ss_pred hheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhh
Q psy7925 239 VFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILT 318 (472)
Q Consensus 239 ~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~ 318 (472)
T Consensus 335 -------------------------------------------------------------------------------- 334 (479)
T KOG1287|consen 335 -------------------------------------------------------------------------------- 334 (479)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCC
Q psy7925 319 TSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDL 398 (472)
Q Consensus 319 ~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l~~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~ 398 (472)
+|..++++++.++++..+.++++++.+..++..++.+.+..++++++|+|+|+.
T Consensus 335 --------------------------TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~ 388 (479)
T KOG1287|consen 335 --------------------------TPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPL 388 (479)
T ss_pred --------------------------CChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 555666667777777777889999999999999999999999999999999999
Q ss_pred CCCcccchhHHHHHHHHHHHHHhhccccc-chhHHHHHHHHHHHHHHHHHHHHHhccCcccccc
Q psy7925 399 PRPIKVHLIFPAAYLIASVFVTLVPMMAS-PVETGIGCLMIATSVPVYMVFIAWRNKPKVFTKS 461 (472)
Q Consensus 399 ~~~~~~~~~~~il~iv~~l~li~~~~~~~-~~~~~i~~~v~~lgl~iy~~~~~~~~~~~~~~~~ 461 (472)
+||+|.|+..|++..++|++++..|++.. +.+..+...+++.|+++|+...++++|+++.++.
T Consensus 389 ~rPiKvpl~~p~~~~~~~i~lvvip~~~~~~~~~~ig~~i~l~G~~~Y~~~i~~~~~p~~~~~~ 452 (479)
T KOG1287|consen 389 PRPIKVPLFIPILFLLICIFLVVIPIISDFPVETLIGIGIILSGVPFYFLFIHWKKKPKWLRKI 452 (479)
T ss_pred CCCEeeeeehHHHHHHHHHHHhheeeeecCCccchhHHHHHHHhhhhheEEEEecCCcHHHHHh
Confidence 99999999999999999999999999988 6668899999999999999888888877665544
No 2
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=2.3e-31 Score=285.42 Aligned_cols=252 Identities=47% Similarity=0.921 Sum_probs=207.1
Q ss_pred ccCCCCChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHH
Q psy7925 23 FENSTTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVA 102 (472)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 102 (472)
|++..++..++..++..++|+|.|||.+++++||+|||+||+|||+..++.+++++|++.+++....+|.+++.+++++.
T Consensus 227 f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~ 306 (501)
T TIGR00911 227 FEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVA 306 (501)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHH
Confidence 33434567899999999999999999999999999999999999999999999999999999999999988887665444
Q ss_pred HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHh
Q psy7925 103 VTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILT 182 (472)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~ 182 (472)
..+.++.+|...+.+
T Consensus 307 ~~~~~~~~g~~~~~i----------------------------------------------------------------- 321 (501)
T TIGR00911 307 VDFGERLLGVMSWAM----------------------------------------------------------------- 321 (501)
T ss_pred HHHHHHHhhhHHHHH-----------------------------------------------------------------
Confidence 444444433211222
Q ss_pred HhhhccCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHH
Q psy7925 183 MIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVT 262 (472)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~ 262 (472)
T Consensus 322 -------------------------------------------------------------------------------- 321 (501)
T TIGR00911 322 -------------------------------------------------------------------------------- 321 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCC
Q psy7925 263 VVYVLTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVT 342 (472)
Q Consensus 263 vlY~~~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k 342 (472)
.+.++++.+++.++.+++.||++++++|||.+|++|+|+|+|
T Consensus 322 --------------------------------------~~~~~is~~~~~~~~~~~~sR~l~a~ardg~lP~~~~~v~~~ 363 (501)
T TIGR00911 322 --------------------------------------PALVGLSCFGSVNGSLFSSSRLFFVGGREGHLPSLLSMIHVK 363 (501)
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHhcCC
Confidence 234455677777888888888888888889999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccchhHHHHHHHHHHHHHhh
Q psy7925 343 KMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLV 422 (472)
Q Consensus 343 ~~tP~~al~~~~~i~~ii~l~~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~~~~il~iv~~l~li~~ 422 (472)
+++|++++++..+++++....++++.+.++.++..++.|.+..++.+++|+|+|+.+||||.|.+.+.++++.+++++..
T Consensus 364 ~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~p~~~rp~r~p~~~~~l~~~~~~~~~~~ 443 (501)
T TIGR00911 364 RLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRYKRPEMNRPIKVPLFFPVFFLLSCLFLIIL 443 (501)
T ss_pred CCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHheeccCCCCCCCccCchHHHHHHHHHHHHHhhh
Confidence 99999999999888887777778888888888899999999999999999999999999999988888888888888877
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHhccCcc
Q psy7925 423 PMMASPVETGIGCLMIATSVPVYMVFIAWRNKPKV 457 (472)
Q Consensus 423 ~~~~~~~~~~i~~~v~~lgl~iy~~~~~~~~~~~~ 457 (472)
+.+.++........+.++|+++|+...++++++++
T Consensus 444 ~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~~ 478 (501)
T TIGR00911 444 SLYSPPVGCGVGFIIMLTGVPVYFFGVWWQNKPKW 478 (501)
T ss_pred hhccCchhhHHHHHHHHHHHHHHHHHHHHHhccHh
Confidence 77777766677777888898888864555555444
No 3
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.97 E-value=2.8e-30 Score=272.83 Aligned_cols=242 Identities=17% Similarity=0.295 Sum_probs=195.9
Q ss_pred ChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHHH
Q psy7925 29 DVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFANR 108 (472)
Q Consensus 29 ~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (472)
.+.++..++..++|+|.|||.+++++||+|||+||+|||+..++.+++++|++.+++.....|.+++.+++.+.....++
T Consensus 193 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~ 272 (445)
T PRK11357 193 SFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTW 272 (445)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHH
Confidence 36788889999999999999999999999999999999999999999999999999999999999887665554433332
Q ss_pred h--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhHhhh
Q psy7925 109 I--FGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQV 186 (472)
Q Consensus 109 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~~~~ 186 (472)
. +|+..
T Consensus 273 ~~~~g~~~------------------------------------------------------------------------ 280 (445)
T PRK11357 273 IPALGSTA------------------------------------------------------------------------ 280 (445)
T ss_pred HHhcchHH------------------------------------------------------------------------
Confidence 1 22210
Q ss_pred ccCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHH
Q psy7925 187 TKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYV 266 (472)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~ 266 (472)
T Consensus 281 -------------------------------------------------------------------------------- 280 (445)
T PRK11357 281 -------------------------------------------------------------------------------- 280 (445)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCc
Q psy7925 267 LTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTP 346 (472)
Q Consensus 267 ~~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP 346 (472)
+.++.+.+.++.+++.++.+.+.+|++|+++|||.+||+|+|+|||+++|
T Consensus 281 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lp~~~~~v~~~~~tP 330 (445)
T PRK11357 281 ------------------------------GIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFFKCFGHVHPKYNTP 330 (445)
T ss_pred ------------------------------HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCchHHHHHhCCCCCCC
Confidence 01112344556677778888889999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccch--hHHHHHHHHHHHHHhhcc
Q psy7925 347 TPAVLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHL--IFPAAYLIASVFVTLVPM 424 (472)
Q Consensus 347 ~~al~~~~~i~~ii~l~~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~--~~~il~iv~~l~li~~~~ 424 (472)
+++++++.++++++....+++++.+...+..++.|.+...+.+++|+|+ +.+||||.|. ..+.++++.+++++..+.
T Consensus 331 ~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~~-~~~~~~k~p~~~~~~~~~~~~~~~~~~~~~ 409 (445)
T PRK11357 331 DVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRD-DYKPLWRTPAFGLMTTLAIASSLILVASTF 409 (445)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHheeecCC-CCCCCcccCCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888788899999999999999999988988887664 5678999997 678888888888877665
Q ss_pred cccchhHH-HHHHHHHHHHHHHHHHHHHhc
Q psy7925 425 MASPVETG-IGCLMIATSVPVYMVFIAWRN 453 (472)
Q Consensus 425 ~~~~~~~~-i~~~v~~lgl~iy~~~~~~~~ 453 (472)
..++...+ ..+.+.++|+++|++++++++
T Consensus 410 ~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 439 (445)
T PRK11357 410 VWAPIPGLICAVIVIATGLPAYAFWAKRSR 439 (445)
T ss_pred HcCcHHHHHHHHHHHHHhhhHHhheechhh
Confidence 66665555 466778899988886655543
No 4
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.97 E-value=1.6e-29 Score=274.98 Aligned_cols=142 Identities=22% Similarity=0.269 Sum_probs=116.1
Q ss_pred CChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHH
Q psy7925 28 TDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFAN 107 (472)
Q Consensus 28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (472)
.++.+++.+...++|+|.|||.+++++||+|||+||+|||++.++++++++|++.+++.....|++++..+++....+..
T Consensus 228 ~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~ 307 (557)
T TIGR00906 228 YGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEY 307 (557)
T ss_pred cchHHHHHHHHHHHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999888766555554444
Q ss_pred HhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHH
Q psy7925 108 RIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLT 169 (472)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~ 169 (472)
...++.+..+.+.++.+.++++++.++.+||++|+|||||++|++|+|+||+++||++++++
T Consensus 308 ~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~ 369 (557)
T TIGR00906 308 VGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVV 369 (557)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHH
Confidence 44444456667777778888888888888888888888887777777777777776666553
No 5
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.97 E-value=3.4e-29 Score=264.18 Aligned_cols=244 Identities=16% Similarity=0.215 Sum_probs=190.6
Q ss_pred ChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHHH
Q psy7925 29 DVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFANR 108 (472)
Q Consensus 29 ~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (472)
++.++..++..++|+|.|+|.+++++||+|||+||+|||++.+..++.++|+...+......+.+++.+++.+.....++
T Consensus 189 ~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~ 268 (442)
T TIGR00908 189 AYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALES 268 (442)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHH
Confidence 45688899999999999999999999999999999999999999999999998888777777888887666565555555
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhHhhhcc
Q psy7925 109 IFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQVTK 188 (472)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (472)
.++...+...
T Consensus 269 ~~g~~~~~~~---------------------------------------------------------------------- 278 (442)
T TIGR00908 269 IYGGSTWMSQ---------------------------------------------------------------------- 278 (442)
T ss_pred HhCCchHHHH----------------------------------------------------------------------
Confidence 5443211110
Q ss_pred CCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHH
Q psy7925 189 MTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLT 268 (472)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~ 268 (472)
T Consensus 279 -------------------------------------------------------------------------------- 278 (442)
T TIGR00908 279 -------------------------------------------------------------------------------- 278 (442)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchh
Q psy7925 269 NVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTP 348 (472)
Q Consensus 269 ~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~ 348 (472)
++.+..+++.+++.++.+++.+|++++|+|||.+||+|+|+| |+++|++
T Consensus 279 ------------------------------~i~~~~~~~~~~s~~~~~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~ 327 (442)
T TIGR00908 279 ------------------------------FVNLVGLFGLIASFHGIIYGYSRQIFALSRAGYLPESLSKVN-RKKAPVL 327 (442)
T ss_pred ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHhC-CCCCcHH
Confidence 011334455667778888889999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccch--hHHHHHHHHHHHHHhhcccc
Q psy7925 349 AVLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHL--IFPAAYLIASVFVTLVPMMA 426 (472)
Q Consensus 349 al~~~~~i~~ii~l~~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~--~~~il~iv~~l~li~~~~~~ 426 (472)
+++++.+++++..+..+.+.+.++.++..++.|.+...+.+++|+|+|+.+||||.|. +.++++++.+++.+....+.
T Consensus 328 Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~i~lr~~~p~~~rp~~~p~~~~~~~l~~~~~~~~l~~~~~~ 407 (442)
T TIGR00908 328 AIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRPDMERPYRTPGGILTPGVALVLACVALVTGFYV 407 (442)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCCCcchHHHHHHHHHHHHHHHHHHc
Confidence 9999999998888777777788888999999999999999999999999999999985 78888888887776665554
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhc
Q psy7925 427 SPVETGIGCLMIATSVPVYMVFIAWRN 453 (472)
Q Consensus 427 ~~~~~~i~~~v~~lgl~iy~~~~~~~~ 453 (472)
.+........+..+..+.|+.++|+|+
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~l~~~~~~ 434 (442)
T TIGR00908 408 DPRVVVGAVAIFVVLIGYYFLYSRHHL 434 (442)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhhchh
Confidence 443333334445555555655544333
No 6
>PRK10655 potE putrescine transporter; Provisional
Probab=99.97 E-value=2.4e-28 Score=257.47 Aligned_cols=235 Identities=18% Similarity=0.226 Sum_probs=176.2
Q ss_pred hhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHHHh
Q psy7925 30 VTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFANRI 109 (472)
Q Consensus 30 ~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (472)
+.++..++..++|+|.|||.+++++||+|||+||+|||++.+..+++++|++.+.......|.+|+.+++.+.....++.
T Consensus 188 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~ 267 (438)
T PRK10655 188 FSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQM 267 (438)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHH
Confidence 46888889999999999999999999999999999999999999999999999988888889999877666666666677
Q ss_pred ccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhHhhhcc
Q psy7925 110 FGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQVTK 188 (472)
Q Consensus 110 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (472)
+++. +..+...++++.+++.++.+
T Consensus 268 ~g~~~~~~~~~~~~is~~~~~~~~~------------------------------------------------------- 292 (438)
T PRK10655 268 FNPTVGKIVMALMVMSCCGSLLGWQ------------------------------------------------------- 292 (438)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------------
Confidence 7764 34555444445555555544
Q ss_pred CCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHH
Q psy7925 189 MTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLT 268 (472)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~ 268 (472)
T Consensus 293 -------------------------------------------------------------------------------- 292 (438)
T PRK10655 293 -------------------------------------------------------------------------------- 292 (438)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchh
Q psy7925 269 NVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTP 348 (472)
Q Consensus 269 ~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~ 348 (472)
.+.+|++|+++|||++||+|+|+| |+++|++
T Consensus 293 ------------------------------------------------~~~sR~~~~~a~dg~lP~~~~~v~-~~~tP~~ 323 (438)
T PRK10655 293 ------------------------------------------------FTIAQVFKSSADEGYFPKIFSRVT-KVDAPVQ 323 (438)
T ss_pred ------------------------------------------------HHHHHHHHHHhcCCchhHHHHhhC-cCCCCHH
Confidence 445555555555555555666665 4566666
Q ss_pred HHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccchhHHHHHHHHHHHHHh
Q psy7925 349 AVLTIAFLSLLYLMS-------SNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTL 421 (472)
Q Consensus 349 al~~~~~i~~ii~l~-------~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~~~~il~iv~~l~li~ 421 (472)
+++++.+++.++.+. ..++.+.++.++..++.|.+...+.+++|+|+|+.+||+|.+..++.++.+.+++.++
T Consensus 324 all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (438)
T PRK10655 324 GMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANVPPSKAKVANFIAFVGALYSFYALY 403 (438)
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 666666655544331 3577888999999999999999999999998888889999887778888877776543
Q ss_pred hcccccchh-HHHHHHHHHHHHHHHHHHHHHh
Q psy7925 422 VPMMASPVE-TGIGCLMIATSVPVYMVFIAWR 452 (472)
Q Consensus 422 ~~~~~~~~~-~~i~~~v~~lgl~iy~~~~~~~ 452 (472)
..+.. ......+.++++++|.+++||+
T Consensus 404 ----~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 431 (438)
T PRK10655 404 ----SSGEEAMLYGSIVTFLGWTLYGLISPRF 431 (438)
T ss_pred ----HhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33433 4556778888998887654443
No 7
>TIGR00909 2A0306 amino acid transporter.
Probab=99.96 E-value=7.2e-28 Score=252.60 Aligned_cols=236 Identities=19% Similarity=0.275 Sum_probs=193.5
Q ss_pred CCChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHH
Q psy7925 27 TTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFA 106 (472)
Q Consensus 27 ~~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (472)
+.+..++..++...+|+|.|||.+.+++||+|||+|++|||+..+..++.++|++.+.+.....|.+++.+++.+.....
T Consensus 191 ~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (429)
T TIGR00909 191 PMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVG 270 (429)
T ss_pred CCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHH
Confidence 35677899999999999999999999999999999999999999999999999999999998889888876665544433
Q ss_pred HHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhHhhh
Q psy7925 107 NRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQV 186 (472)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~~~~ 186 (472)
++..++..
T Consensus 271 ~~~~~~~~------------------------------------------------------------------------ 278 (429)
T TIGR00909 271 YDLGQGIG------------------------------------------------------------------------ 278 (429)
T ss_pred HHhCchHH------------------------------------------------------------------------
Confidence 33322211
Q ss_pred ccCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHH
Q psy7925 187 TKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYV 266 (472)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~ 266 (472)
T Consensus 279 -------------------------------------------------------------------------------- 278 (429)
T TIGR00909 279 -------------------------------------------------------------------------------- 278 (429)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCc
Q psy7925 267 LTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTP 346 (472)
Q Consensus 267 ~~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP 346 (472)
+.++.+.++++.+++.++++.+.+|.+++++|||.+||+|+|+|||+++|
T Consensus 279 ------------------------------~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~~P 328 (429)
T TIGR00909 279 ------------------------------GLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTP 328 (429)
T ss_pred ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCCCCCc
Confidence 01123556677788888888889999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccch--hHHHHHHHHHHHHHhhcc
Q psy7925 347 TPAVLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHL--IFPAAYLIASVFVTLVPM 424 (472)
Q Consensus 347 ~~al~~~~~i~~ii~l~~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~--~~~il~iv~~l~li~~~~ 424 (472)
+++++++.+++++......++.+.++.++..++.|.+..++.+++|+|+|+.+||+|.|. +.+.+.++.++++.+.
T Consensus 329 ~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 406 (429)
T TIGR00909 329 HMSIIIFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVAVIILRRRRPDIQRAFRCPLVPVLPVLVVSYCIYLLLN-- 406 (429)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcchHHHHHHHHHHHHHHHH--
Confidence 999999999988887777788999999999999999999999999999999999999887 4555555556655432
Q ss_pred cccchhHHHHHHHHHHHHHHHHH
Q psy7925 425 MASPVETGIGCLMIATSVPVYMV 447 (472)
Q Consensus 425 ~~~~~~~~i~~~v~~lgl~iy~~ 447 (472)
..+........+.++|.+.|..
T Consensus 407 -~~~~~~~~~~~~~~~g~~~y~~ 428 (429)
T TIGR00909 407 -LGPGTTVWFLVWMLLGSVFYFI 428 (429)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHc
Confidence 3455666777889999987753
No 8
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.96 E-value=2.1e-27 Score=253.08 Aligned_cols=138 Identities=15% Similarity=0.226 Sum_probs=105.9
Q ss_pred CChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHH
Q psy7925 28 TDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFAN 107 (472)
Q Consensus 28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (472)
++..++..++..++|+|.|||.+++++||+|||+||+|||+..+..++.++|++.+++.....|.++...++.+.....+
T Consensus 203 ~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~ 282 (471)
T PRK11387 203 HGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFE 282 (471)
T ss_pred ccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHH
Confidence 34568899999999999999999999999999999999999999999999999999999888898887666666666666
Q ss_pred Hhccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhH
Q psy7925 108 RIFGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPA 166 (472)
Q Consensus 108 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~ 166 (472)
+..++. ...+.+.++++.+++.|+.++..||.+|+|||||++|++|+|+|+ ++||+++
T Consensus 283 ~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~f~~~~~-~~~P~~A 341 (471)
T PRK11387 283 KVGIPYAADIFNFVILTAILSAANSGLYASGRMLWSLSNEGTLPACFARLTK-RGIPLTA 341 (471)
T ss_pred HcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCcCHHHHHhCC-CCCcHHH
Confidence 655543 456666666777777777666666666666666666655555552 3444444
No 9
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.96 E-value=9.9e-27 Score=245.99 Aligned_cols=237 Identities=17% Similarity=0.187 Sum_probs=172.2
Q ss_pred CChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHH
Q psy7925 28 TDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFAN 107 (472)
Q Consensus 28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (472)
+++.++..++..++|+|.|||.+++++||+|||+||+|||+..++.+++++|++.+++....+|++|+..++.+.....+
T Consensus 188 ~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~ 267 (445)
T PRK10644 188 GTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAAR 267 (445)
T ss_pred chHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHH
Confidence 35678888899999999999999999999999999999999999999999999999999999999888776667666667
Q ss_pred Hhccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhHhhh
Q psy7925 108 RIFGPIA-WTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQV 186 (472)
Q Consensus 108 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~~~~ 186 (472)
+.+|+.. ..+.+.++++.++++++.+..
T Consensus 268 ~~~g~~~~~~v~~~~~~s~~~~~~~~~~~--------------------------------------------------- 296 (445)
T PRK10644 268 MALGDTAGAIVSFCAAAGCLGSLGGWTLL--------------------------------------------------- 296 (445)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------------
Confidence 7776643 444444455555555554444
Q ss_pred ccCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHH
Q psy7925 187 TKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYV 266 (472)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~ 266 (472)
T Consensus 297 -------------------------------------------------------------------------------- 296 (445)
T PRK10644 297 -------------------------------------------------------------------------------- 296 (445)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCc
Q psy7925 267 LTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTP 346 (472)
Q Consensus 267 ~~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP 346 (472)
.+|..++++|||.+||+|+|+| |+++|
T Consensus 297 ----------------------------------------------------~sr~~~a~ardg~lP~~~~~v~-~~~tP 323 (445)
T PRK10644 297 ----------------------------------------------------AGQTAKAAADDGLFPPIFARVN-KAGTP 323 (445)
T ss_pred ----------------------------------------------------HHHHHHHHHhCCCccHHHHhhC-cCCCC
Confidence 4555555555555555555665 35666
Q ss_pred hhHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccchhHHHHHHHHHHHH
Q psy7925 347 TPAVLTIAFLSLLYLMS-------SNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFV 419 (472)
Q Consensus 347 ~~al~~~~~i~~ii~l~-------~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~~~~il~iv~~l~l 419 (472)
+++++++.+++.++.+. ..++.+.++.++..++.|.+...+.+++|+|+++.++|+ ..+.+.++++.|+++
T Consensus 324 ~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~p~--~~~~~~~~~~~~~~~ 401 (445)
T PRK10644 324 VAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPA--YLAVTLIAFVYCIWA 401 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccc--hhHHHHHHHHHHHHH
Confidence 66666666666554432 247778899999999999999999999988876544543 236788888888888
Q ss_pred HhhcccccchhHHHHHHHHHHHHHHHHHHHHHhc
Q psy7925 420 TLVPMMASPVETGIGCLMIATSVPVYMVFIAWRN 453 (472)
Q Consensus 420 i~~~~~~~~~~~~i~~~v~~lgl~iy~~~~~~~~ 453 (472)
++. ..+........+.+++.++|+..++||+
T Consensus 402 ~~~---~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 432 (445)
T PRK10644 402 VVG---SGAKEVMWSFVTLMVITAFYALNYNRLH 432 (445)
T ss_pred HHH---hhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 653 2333444555567777777765544433
No 10
>PRK15049 L-asparagine permease; Provisional
Probab=99.96 E-value=1.5e-26 Score=248.59 Aligned_cols=130 Identities=19% Similarity=0.248 Sum_probs=98.7
Q ss_pred CChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHH
Q psy7925 28 TDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFAN 107 (472)
Q Consensus 28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (472)
+++.+++.++..++|+|.|+|.+++++||+|||+||+|||+..++..++++|++...+....+|++++..++.|.....+
T Consensus 217 ~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~ 296 (499)
T PRK15049 217 HGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFS 296 (499)
T ss_pred ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHH
Confidence 35566777888899999999999999999999999999999999999999999999999999999888766666655555
Q ss_pred Hhccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhcc
Q psy7925 108 RIFGP-IAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQ 157 (472)
Q Consensus 108 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~ 157 (472)
+...+ .+..+++.++++.+++.|+.++..||++|++||||++|++|+|+|
T Consensus 297 ~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP~~f~kv~ 347 (499)
T PRK15049 297 KLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSFMAKMS 347 (499)
T ss_pred HcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHhC
Confidence 54443 345666666666666666665555555555555555555554444
No 11
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.95 E-value=1.8e-26 Score=246.08 Aligned_cols=237 Identities=16% Similarity=0.163 Sum_probs=174.7
Q ss_pred ChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhH-HHHHHH
Q psy7925 29 DVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAV-AVTFAN 107 (472)
Q Consensus 29 ~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 107 (472)
++.++..++...+|+|.|||.+++++||+|| +||+|||+..+..+++++|++.+.+....+|.+++.+++.+ .....+
T Consensus 197 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~iPrai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~ 275 (473)
T TIGR00905 197 VFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSDVGKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLE 275 (473)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHH
Confidence 4678888999999999999999999999999 99999999999999999999999999999999998877766 666667
Q ss_pred Hhccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhHhhh
Q psy7925 108 RIFGPIA-WTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQV 186 (472)
Q Consensus 108 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~~~~ 186 (472)
+.+++.. ..+.+.++++.+++.|+.++..||.+|+|+|||++|++|+
T Consensus 276 ~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amardg~lP~~~~-------------------------------- 323 (473)
T TIGR00905 276 MIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKDGLFPKIFG-------------------------------- 323 (473)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHH--------------------------------
Confidence 7777643 5555556666666666666666666665555555555555
Q ss_pred ccCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHH
Q psy7925 187 TKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYV 266 (472)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~ 266 (472)
T Consensus 324 -------------------------------------------------------------------------------- 323 (473)
T TIGR00905 324 -------------------------------------------------------------------------------- 323 (473)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCc
Q psy7925 267 LTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTP 346 (472)
Q Consensus 267 ~~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP 346 (472)
|+|+ +++|
T Consensus 324 -----------------------------------------------------------------------~v~~-~~tP 331 (473)
T TIGR00905 324 -----------------------------------------------------------------------RVNK-NGAP 331 (473)
T ss_pred -----------------------------------------------------------------------hhCc-cCCC
Confidence 4443 3566
Q ss_pred hhHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccchhHHHHHHHHHHHHHh
Q psy7925 347 TPAVLTIAFLSLLYLM-----SSNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTL 421 (472)
Q Consensus 347 ~~al~~~~~i~~ii~l-----~~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~~~~il~iv~~l~li~ 421 (472)
+++++++.+++.+..+ ...++.+.++.++..++.|.+...+.+++|+|++..+++.+.+.++++++.+.++++.+
T Consensus 332 ~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 411 (473)
T TIGR00905 332 SVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVGTYPKIKNRKALIVGVIACVYSIWLLY 411 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccchHHHHHHHHHHHHHHHHH
Confidence 6666665555543333 24678888999999999999999999999877621112223344778888887777754
Q ss_pred hcccccchhHHHHHHHHHHHHHHHHHHHHHhc
Q psy7925 422 VPMMASPVETGIGCLMIATSVPVYMVFIAWRN 453 (472)
Q Consensus 422 ~~~~~~~~~~~i~~~v~~lgl~iy~~~~~~~~ 453 (472)
. ..+......+.+.++|+++|.+++|+|+
T Consensus 412 ~---~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 440 (473)
T TIGR00905 412 A---AGLKYLLLGFILYAPGIIFYGRARKERG 440 (473)
T ss_pred H---hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3 3444566777788999988887665553
No 12
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.95 E-value=2.6e-26 Score=244.55 Aligned_cols=127 Identities=20% Similarity=0.288 Sum_probs=86.6
Q ss_pred hhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhh--hhcc-------hh
Q psy7925 30 VTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAE--VLNS-------EA 100 (472)
Q Consensus 30 ~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~--~~~~-------~~ 100 (472)
+.++..++..++|+|.|+|.+++++||+|||+||+|||+..+..++.++|++..++.....|+++ +.++ ..
T Consensus 196 ~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~ 275 (478)
T TIGR00913 196 FKGVCSVFVTAAFSFGGTELVALTAGEAANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAAS 275 (478)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCC
Confidence 67899999999999999999999999999999999999999999999999999888777777654 3221 12
Q ss_pred HHHHHHHHhccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhc
Q psy7925 101 VAVTFANRIFGP-IAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMI 156 (472)
Q Consensus 101 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~ 156 (472)
+.....++...+ ....+.+.++++.+++.|+.++..||.+|++||||.+|++|+|+
T Consensus 276 p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~f~k~ 332 (478)
T TIGR00913 276 PFVIAIQNHGIKVLPHIFNAVILISVLSAANSSLYASSRTLYALAHQGLAPKIFAYV 332 (478)
T ss_pred cHHHHHHHcCCchHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCCcccHHHHhh
Confidence 332333332222 23455555555555555555555444444444444444444333
No 13
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.95 E-value=6.1e-26 Score=240.51 Aligned_cols=247 Identities=15% Similarity=0.147 Sum_probs=171.1
Q ss_pred CCChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcch-hHHHHH
Q psy7925 27 TTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSE-AVAVTF 105 (472)
Q Consensus 27 ~~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~-~~~~~~ 105 (472)
++++.++..++..++|+|.|+|.+++.+||+|||+||+|||+..+...+.++|++..++....+|+++...+. .+....
T Consensus 177 p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~ 256 (446)
T PRK10197 177 PNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSV 256 (446)
T ss_pred cccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999998888887643221 222233
Q ss_pred HHHhccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhHh
Q psy7925 106 ANRIFGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMI 184 (472)
Q Consensus 106 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~~ 184 (472)
.++..++. ...+++.++++.+++.|+.++..||.+|
T Consensus 257 ~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~------------------------------------------- 293 (446)
T PRK10197 257 LELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLY------------------------------------------- 293 (446)
T ss_pred HHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------
Confidence 34433333 3555555555555555555555555554
Q ss_pred hhccCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHH
Q psy7925 185 QVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVV 264 (472)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vl 264 (472)
T Consensus 294 -------------------------------------------------------------------------------- 293 (446)
T PRK10197 294 -------------------------------------------------------------------------------- 293 (446)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCC
Q psy7925 265 YVLTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKM 344 (472)
Q Consensus 265 Y~~~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~ 344 (472)
+++|||.+||+|+|+| |++
T Consensus 294 ------------------------------------------------------------a~ardg~lP~~~~~~~-~~~ 312 (446)
T PRK10197 294 ------------------------------------------------------------SLSRRGDAPAVMGKIN-RSK 312 (446)
T ss_pred ------------------------------------------------------------HHHcCCCcCHHHHhhC-cCC
Confidence 4555555555555555 566
Q ss_pred CchhHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhc--CCCCCCCcccch--hHHHHHHH
Q psy7925 345 TPTPAVLTIAFLSLLYLMS------SNIFALINYVGFATWLSIGVGVLCLPVLRYT--QPDLPRPIKVHL--IFPAAYLI 414 (472)
Q Consensus 345 tP~~al~~~~~i~~ii~l~------~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~--~~~~~~~~~~~~--~~~il~iv 414 (472)
+|+++++++.+++++..+. ..++.+.+..++..++.|.+...+.+++||+ +++.++++|.|. +.+.++++
T Consensus 313 ~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~~~~~~~~~~~~~~~p~~~~~~i~ 392 (446)
T PRK10197 313 TPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILRAEGSEIRLRMWLYPWLTWLVIG 392 (446)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCCcchHHHHHHH
Confidence 6666666665555444332 2577888999999999999999999999875 333467888875 56666666
Q ss_pred HHHHHHhhcccc-cchhHHHHHHHHHHHHHHHH-HHHHHhccCcc
Q psy7925 415 ASVFVTLVPMMA-SPVETGIGCLMIATSVPVYM-VFIAWRNKPKV 457 (472)
Q Consensus 415 ~~l~li~~~~~~-~~~~~~i~~~v~~lgl~iy~-~~~~~~~~~~~ 457 (472)
.+++++....++ .+........+.++++..|+ .-+|++|...+
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (446)
T PRK10197 393 FITFVLVVMLFRPAQQLEVISTGLLAIGIICTVPIMARWKKLVLW 437 (446)
T ss_pred HHHHHHHHHHHCcchHHHHHHHHHHHHHHHhhhHHHhhhcccccC
Confidence 665554443333 34444556777888888888 55555555443
No 14
>PRK10836 lysine transporter; Provisional
Probab=99.95 E-value=5.3e-26 Score=243.49 Aligned_cols=129 Identities=16% Similarity=0.242 Sum_probs=86.9
Q ss_pred ChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhc--c------hh
Q psy7925 29 DVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLN--S------EA 100 (472)
Q Consensus 29 ~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~--~------~~ 100 (472)
++.++..+....+|+|.|||.+++++||+|||+||+|||+..++..+.++|++.+......+|.+|... + ..
T Consensus 203 g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~s 282 (489)
T PRK10836 203 GFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVS 282 (489)
T ss_pred cHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCC
Confidence 455666566667899999999999999999999999999999999999999999999888888765321 1 12
Q ss_pred HHHHHHHHh-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhcc
Q psy7925 101 VAVTFANRI-FGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQ 157 (472)
Q Consensus 101 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~ 157 (472)
+.....++. ....+..+++.++++.+++.|+.++..||++|++||||++|++|+|+|
T Consensus 283 p~~~~~~~~g~~~~~~ii~~~il~a~~~~~n~~~~~~sR~l~a~Ardg~lP~~~~kv~ 340 (489)
T PRK10836 283 PFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPRIFAKLS 340 (489)
T ss_pred cHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhC
Confidence 333232332 222235555555555555555555555555555555554444444443
No 15
>PRK10746 putative transport protein YifK; Provisional
Probab=99.95 E-value=2e-25 Score=237.65 Aligned_cols=139 Identities=19% Similarity=0.192 Sum_probs=106.7
Q ss_pred CChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHH
Q psy7925 28 TDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFAN 107 (472)
Q Consensus 28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (472)
+++.++..++..++|+|.|+|.++..+||+|||+||+|||+..+...+.++|++...+....+|++|+..++.+.....+
T Consensus 197 ~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~ 276 (461)
T PRK10746 197 GGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFA 276 (461)
T ss_pred ccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999998889999998766655544444
Q ss_pred Hhccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHH
Q psy7925 108 RIFGP-IAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAV 167 (472)
Q Consensus 108 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~ 167 (472)
+...+ .+.++++.++++.+++.|+.++..||.+|++||||++|++|+|+| +++||++++
T Consensus 277 ~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~~~~~~-~~g~P~~al 336 (461)
T PRK10746 277 KIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVS-RHGVPVAGV 336 (461)
T ss_pred HhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHhC-CCCCcHHHH
Confidence 44333 346667666677777777766666666666666666666666555 344554443
No 16
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.94 E-value=1.5e-25 Score=238.96 Aligned_cols=130 Identities=22% Similarity=0.292 Sum_probs=97.7
Q ss_pred CChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHH
Q psy7925 28 TDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFAN 107 (472)
Q Consensus 28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (472)
+++.++..++...+|+|.|||.+++++||+|||+||+|||+..+.+.+.+.|++.+.......|++++.+++.+.....+
T Consensus 208 ~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~ 287 (469)
T PRK11049 208 KGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFV 287 (469)
T ss_pred ccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHH
Confidence 45678999999999999999999999999999999999999988889999999999999888899988776666555544
Q ss_pred Hhccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhcc
Q psy7925 108 RIFGP-IAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQ 157 (472)
Q Consensus 108 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~ 157 (472)
+..++ ....+.+.++++.+++.|+.++..||.+|+++|||++|++|+|+|
T Consensus 288 ~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~ 338 (469)
T PRK11049 288 LVGLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKAFAKLS 338 (469)
T ss_pred HcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhhC
Confidence 44333 345666556666666666655555555555555555554444444
No 17
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.94 E-value=4.1e-25 Score=238.08 Aligned_cols=123 Identities=17% Similarity=0.270 Sum_probs=99.2
Q ss_pred HHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHhh---------hhHHHHHHH
Q psy7925 302 VFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMS---------SNIFALINY 372 (472)
Q Consensus 302 i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l~---------~~~~~l~~l 372 (472)
+.++++.+++.++++++.||.+++++|||.+|++|+|+| |+++|.++++++.+++.++.+. ..+..+.++
T Consensus 288 ~~~~~~~l~~~~~~i~~~sR~l~~~ardg~lP~~~~k~n-k~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~ 366 (507)
T TIGR00910 288 ALIAFGVLAEIASWIVGPSRGMFAAAQKGLLPAAFAKMN-KHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIAL 366 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 455667788889999999999999999999999999999 8899999999998888765432 123445577
Q ss_pred HHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccch------hHHHHHHHHHHHHHhhccc
Q psy7925 373 VGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHL------IFPAAYLIASVFVTLVPMM 425 (472)
Q Consensus 373 ~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~------~~~il~iv~~l~li~~~~~ 425 (472)
.++..++.|++...+.+++|+|+|+.+||||.|. ....++++.+++.++..+.
T Consensus 367 ~~~~~~i~Y~l~~~a~i~lr~k~p~~~rpf~~pg~~~~~~i~~~~~~~~~~~~~v~~~~ 425 (507)
T TIGR00910 367 TVVIYLCAYFLFFIGYFVLILKHPDLKRTFNIPGGIGGKLIIAGIGFLLSIFAFFISFL 425 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEecCCccchhhHHHHHHHHHHHHHheeee
Confidence 8889999999999999999999999999999863 4566666666666555444
No 18
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.94 E-value=6.1e-25 Score=234.27 Aligned_cols=118 Identities=16% Similarity=0.195 Sum_probs=83.9
Q ss_pred HhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHHH
Q psy7925 307 STFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMS--------SNIFALINYVGFATW 378 (472)
Q Consensus 307 s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l~--------~~~~~l~~l~~~~~l 378 (472)
+.+++.++++.+.+|.+++++|||.+||+|+|+| |+++|+++++++.+++.++.+. ..++.+.++.+...+
T Consensus 291 ~~l~~~~~~~~~~sR~~~a~ardg~lP~~~~kv~-k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~ 369 (474)
T TIGR03813 291 GVLAGVVTWVAGPSSGMLAVAKAGYLPTFFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYL 369 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 3344455566666777777777777777777777 6788888888777664433321 235667788888889
Q ss_pred HHHHHHHhHHHhhhhcCCCCCCCcccch------hHHHHHHHHHHHHHhhccc
Q psy7925 379 LSIGVGVLCLPVLRYTQPDLPRPIKVHL------IFPAAYLIASVFVTLVPMM 425 (472)
Q Consensus 379 ~~yil~~~a~~~l~~~~~~~~~~~~~~~------~~~il~iv~~l~li~~~~~ 425 (472)
+.|++...+.+++|+|+|+.+||||.|. ....++++.+++.++....
T Consensus 370 i~y~~~~~a~i~lr~~~~~~~rpf~~p~g~~g~~~~~~~~~~~~~~~~~~~~~ 422 (474)
T TIGR03813 370 VMYLLMFASAIYLRYSQPDRPRPYRIPGGLAGMWFIGGLGFVGSALAFVLSFI 422 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCeEecCCccchhHHHHHHHHHHHHHHheeEe
Confidence 9999999999999988888899999864 4566666666665554433
No 19
>PRK11021 putative transporter; Provisional
Probab=99.94 E-value=5.1e-25 Score=230.48 Aligned_cols=124 Identities=23% Similarity=0.343 Sum_probs=86.2
Q ss_pred CCChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHH
Q psy7925 27 TTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFA 106 (472)
Q Consensus 27 ~~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (472)
+.++.++..++..++|+|.|||.+++++||+|||+||+|||+..+.++++++|++.+.......+++|...++.+.....
T Consensus 173 ~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (410)
T PRK11021 173 SIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVVVLHFPAYGDKQAAAASLPGIF 252 (410)
T ss_pred CccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhccccHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999988766666555544444444445
Q ss_pred HHhccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy7925 107 NRIFGPIA-WTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMP 150 (472)
Q Consensus 107 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p 150 (472)
++.+|... ..+.+..+++.+++.|+.++..||++|+++|||++|
T Consensus 253 ~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP 297 (410)
T PRK11021 253 VQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPP 297 (410)
T ss_pred HHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 56666543 334333344444444443333333333333333333
No 20
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.94 E-value=6.8e-25 Score=233.68 Aligned_cols=233 Identities=15% Similarity=0.138 Sum_probs=167.7
Q ss_pred hhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhH-HHHHHHH
Q psy7925 30 VTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAV-AVTFANR 108 (472)
Q Consensus 30 ~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 108 (472)
+.++..++...+|+|.|||.++.++||.|| +||+|||+..+..+++++|++.++.....+|.+++.+.+.+ .....++
T Consensus 194 ~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~-~k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~ 272 (468)
T TIGR03810 194 MTQVKNMMLVTVWVFIGIEGASMLSARAEK-RSDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEH 272 (468)
T ss_pred HHHHHHHHHHHHHHHHhHhHHhhhHhhccC-cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHH
Confidence 567778889999999999999999999999 79999999999999999999999999999999988765444 4555566
Q ss_pred hccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhHhhhc
Q psy7925 109 IFGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQVT 187 (472)
Q Consensus 109 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~~~~~ 187 (472)
.+++. +..+.+.++++.+++.|+.++.+||.+|++||||
T Consensus 273 ~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg---------------------------------------- 312 (468)
T TIGR03810 273 MVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDK---------------------------------------- 312 (468)
T ss_pred HcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------------------------------------
Confidence 66664 3555555555555555555555555555555555
Q ss_pred cCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHH
Q psy7925 188 KMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVL 267 (472)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~ 267 (472)
T Consensus 313 -------------------------------------------------------------------------------- 312 (468)
T TIGR03810 313 -------------------------------------------------------------------------------- 312 (468)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCch
Q psy7925 268 TNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPT 347 (472)
Q Consensus 268 ~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~ 347 (472)
.+||+|+|+| |+++|+
T Consensus 313 ---------------------------------------------------------------~lP~~f~k~~-~~~tP~ 328 (468)
T TIGR03810 313 ---------------------------------------------------------------LMPKYFGKEN-ANGAPT 328 (468)
T ss_pred ---------------------------------------------------------------CccHHHHhhC-CCCCCH
Confidence 5555555555 556666
Q ss_pred hHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCC-CCCCCcccchhHHHHHHHHHHHHHh
Q psy7925 348 PAVLTIAFLSLLYLMS-----SNIFALINYVGFATWLSIGVGVLCLPVLRYTQP-DLPRPIKVHLIFPAAYLIASVFVTL 421 (472)
Q Consensus 348 ~al~~~~~i~~ii~l~-----~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~-~~~~~~~~~~~~~il~iv~~l~li~ 421 (472)
++++++.+++.+..+. ..++.+.++.+...++.|.+...+.+++|+|++ +.+|+++ .+++.++.+.++++++
T Consensus 329 ~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~ 406 (468)
T TIGR03810 329 NALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWRGGQERGRRKQ--LLIGLVALLYAVWLIY 406 (468)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh--HHHHHHHHHHHHHHHH
Confidence 6666665555443321 457788899999999999999999999987753 2223332 4667777777777755
Q ss_pred hcccccchhHHHHHHHHHHHHHHHHHHHHHh
Q psy7925 422 VPMMASPVETGIGCLMIATSVPVYMVFIAWR 452 (472)
Q Consensus 422 ~~~~~~~~~~~i~~~v~~lgl~iy~~~~~~~ 452 (472)
. .............+.|+++|++.+|++
T Consensus 407 ~---~~~~~~~~~~~~~~~g~~~y~~~~~~~ 434 (468)
T TIGR03810 407 A---AGLKYLLLSAILYAPGIYFYARARKEK 434 (468)
T ss_pred H---hhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3 344556677778889998887644433
No 21
>PRK10249 phenylalanine transporter; Provisional
Probab=99.94 E-value=6.4e-25 Score=233.46 Aligned_cols=211 Identities=16% Similarity=0.209 Sum_probs=154.6
Q ss_pred CChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHH
Q psy7925 28 TDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFAN 107 (472)
Q Consensus 28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (472)
+++.++..++...+|+|.|+|.+++++||+|||+||+|||+..+...++++|++.........|++|+..++.+.....+
T Consensus 206 ~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 285 (458)
T PRK10249 206 TGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFH 285 (458)
T ss_pred CcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999988888888887655445544444
Q ss_pred Hhccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhHhhh
Q psy7925 108 RIFGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQV 186 (472)
Q Consensus 108 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~~~~ 186 (472)
+..++. +..+++.++++.++
T Consensus 286 ~~~~~~~~~~~~~~~~~a~~~----------------------------------------------------------- 306 (458)
T PRK10249 286 NLDSNVVASALNFVILVASLS----------------------------------------------------------- 306 (458)
T ss_pred HcCchhHHHHHHHHHHHHHHH-----------------------------------------------------------
Confidence 444433 34444444444444
Q ss_pred ccCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHH
Q psy7925 187 TKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYV 266 (472)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~ 266 (472)
T Consensus 307 -------------------------------------------------------------------------------- 306 (458)
T PRK10249 307 -------------------------------------------------------------------------------- 306 (458)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCc
Q psy7925 267 LTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTP 346 (472)
Q Consensus 267 ~~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP 346 (472)
+.++.+++.||++|+++|||.+|++|+|+| |+++|
T Consensus 307 --------------------------------------------~~~~~~~~~sR~l~a~ardg~lP~~~~kv~-~~~~P 341 (458)
T PRK10249 307 --------------------------------------------VYNSGVYSNSRMLFGLSVQGNAPKFLTRVS-RRGVP 341 (458)
T ss_pred --------------------------------------------HHHHHHHHHHHHHHHHhcCCCcCHHHHHhC-CCCCC
Confidence 444555556666666666666666666666 56777
Q ss_pred hhHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHHHHHHhHHHhhhh--cCCCCCCCcccch--hHHHHHHHHH
Q psy7925 347 TPAVLTIAFLSLLYLMS------SNIFALINYVGFATWLSIGVGVLCLPVLRY--TQPDLPRPIKVHL--IFPAAYLIAS 416 (472)
Q Consensus 347 ~~al~~~~~i~~ii~l~------~~~~~l~~l~~~~~l~~yil~~~a~~~l~~--~~~~~~~~~~~~~--~~~il~iv~~ 416 (472)
+++++++.+++.+..+. ..++.+.+..+...++.|.+...+.+++|+ ++++.++|||.|+ +.++++++.+
T Consensus 342 ~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~p~~~~~~p~~~~~~l~~~ 421 (458)
T PRK10249 342 INSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRFRAAMRRQGRETQFKALLYPFGNYLCIAFL 421 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCCccHHHHHHHHHH
Confidence 77777776666655432 246778899999999999999999999886 3444567898876 5555555555
Q ss_pred HHHHhh
Q psy7925 417 VFVTLV 422 (472)
Q Consensus 417 l~li~~ 422 (472)
.+.+..
T Consensus 422 ~~~~v~ 427 (458)
T PRK10249 422 GMILLL 427 (458)
T ss_pred HHHHHH
Confidence 544333
No 22
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.94 E-value=1.1e-24 Score=229.93 Aligned_cols=130 Identities=18% Similarity=0.256 Sum_probs=101.3
Q ss_pred CChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHH
Q psy7925 28 TDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFAN 107 (472)
Q Consensus 28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (472)
+++.++..++..++|+|.|+|.+++.+||+|||+||+|||+..+..+++++|++.++.....+|++|+.+++.|.....+
T Consensus 184 ~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~ 263 (435)
T PRK10435 184 TDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGIIYIAATQVISGMFPASVMAASGAPFAISAS 263 (435)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999777777666667
Q ss_pred Hhccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhcc
Q psy7925 108 RIFGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQ 157 (472)
Q Consensus 108 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~ 157 (472)
+.+++. ...+++.++++.+++.|+.++..+|..++++|||++|++|+|+|
T Consensus 264 ~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~lP~~f~k~n 314 (435)
T PRK10435 264 TILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGNFPKVYGEVD 314 (435)
T ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC
Confidence 766664 35555555556666655555555555555555555444444444
No 23
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.94 E-value=8e-25 Score=231.76 Aligned_cols=130 Identities=18% Similarity=0.239 Sum_probs=90.2
Q ss_pred CChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcch-hHHHHHH
Q psy7925 28 TDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSE-AVAVTFA 106 (472)
Q Consensus 28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 106 (472)
+++.++..++..++|+|.|+|.+++++||+|||+||+|||+..+...++++|++........+|+++....+ .+.....
T Consensus 198 ~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~ 277 (452)
T TIGR01773 198 NGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVL 277 (452)
T ss_pred ccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHH
Confidence 456789999999999999999999999999999999999999999999999999888777777766544322 2444444
Q ss_pred HHhccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhcc
Q psy7925 107 NRIFGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQ 157 (472)
Q Consensus 107 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~ 157 (472)
++..++. ...+++.++++.+++.|+.++..||.+|++||||++|++|+|+|
T Consensus 278 ~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~v~ 329 (452)
T TIGR01773 278 ELLGIPHAKLIMDFVVLTAVLSCLNSALYTTSRMLYSLAERGDAPRVFMKLN 329 (452)
T ss_pred HHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHhhC
Confidence 4443333 34555555555555555555544444444444444444444333
No 24
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.94 E-value=1.9e-24 Score=229.66 Aligned_cols=131 Identities=15% Similarity=0.259 Sum_probs=92.7
Q ss_pred CCChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHH
Q psy7925 27 TTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFA 106 (472)
Q Consensus 27 ~~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (472)
++++.++..++..++|+|.|+|.+++++||+|||+||+|||+..++..+.+.|++.........|++++.+++.|.....
T Consensus 196 ~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~ 275 (456)
T PRK10238 196 PHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIF 275 (456)
T ss_pred cccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHH
Confidence 34567888888899999999999999999999999999999999999999999998888777889888876655555444
Q ss_pred HHhccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhcc
Q psy7925 107 NRIFGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQ 157 (472)
Q Consensus 107 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~ 157 (472)
++..++. ...+++.++++.+++.|+.++..||.+|++||||++|++|+|+|
T Consensus 276 ~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP~~f~kv~ 327 (456)
T PRK10238 276 HELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVD 327 (456)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC
Confidence 4433332 34455555555555555554444444444444444444444333
No 25
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.94 E-value=1e-24 Score=231.47 Aligned_cols=140 Identities=21% Similarity=0.239 Sum_probs=100.6
Q ss_pred CCChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHH
Q psy7925 27 TTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFA 106 (472)
Q Consensus 27 ~~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (472)
++++.++..++..++|+|.|+|.+++++||+|||+||+|||+..+.+.+.++|++.........|++++..++.+.....
T Consensus 195 ~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~ 274 (457)
T PRK10580 195 SNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTF 274 (457)
T ss_pred CcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999988888888888765544444443
Q ss_pred HHhccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHH
Q psy7925 107 NRIFGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAV 167 (472)
Q Consensus 107 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~ 167 (472)
++...+. ...+++.++++.+++.|+.++..||.++++||||.+|++|+|+|+ ++||++|+
T Consensus 275 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~~~~kv~~-~~~P~~Ai 335 (457)
T PRK10580 275 QHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKTSR-RGIPWVTV 335 (457)
T ss_pred HHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHhhCC-CCCcHHHH
Confidence 4332222 345555555666666666666666666666666655555555553 34444443
No 26
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.92 E-value=1.5e-23 Score=223.83 Aligned_cols=117 Identities=18% Similarity=0.218 Sum_probs=90.3
Q ss_pred HHHHHHhhhchhhhhhhhhHHHHHhhhcCCCC--hhhhcccCCCCCchhHHHHHHHHHHHHHhh-----hhHHHHHHHHH
Q psy7925 302 VFVALSTFGGVNGIILTTSRLFYAGACEGQMP--EILTMIQVTKMTPTPAVLTIAFLSLLYLMS-----SNIFALINYVG 374 (472)
Q Consensus 302 i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP--~~f~kv~~k~~tP~~al~~~~~i~~ii~l~-----~~~~~l~~l~~ 374 (472)
+.++++.+++.++++++.||++++++|||.+| ++|+|+|||+++|+++++++.+++.++.+. ..++.+.+..+
T Consensus 310 ~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~ 389 (482)
T TIGR00907 310 CLILVTSFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCT 389 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34556667788889999999999999999999 999999999999999999998888776653 36788889999
Q ss_pred HHHHHHHHHHHhHHHhhhhcCCCCCCCcccch---hHHHHHHHHHHHH
Q psy7925 375 FATWLSIGVGVLCLPVLRYTQPDLPRPIKVHL---IFPAAYLIASVFV 419 (472)
Q Consensus 375 ~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~---~~~il~iv~~l~l 419 (472)
+..++.|.+...+.+++|++ ++.+||||.+. .+..++++.+.+.
T Consensus 390 ~~~~i~y~~~~~~~l~~~~~-~~~~~~f~lg~~~~~~~~~~~~~~~~~ 436 (482)
T TIGR00907 390 VALDVSYVIPIICKLAKGRN-TIAPGPFWLGKYGFFVNAVAVAWTVFS 436 (482)
T ss_pred HHHHHHHHHHHHHHHHhcCC-CCCCCCCcCCcchHHHHHHHHHHHHHH
Confidence 99999999988776654433 45577888743 3444444444333
No 27
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.91 E-value=2.8e-23 Score=219.85 Aligned_cols=236 Identities=19% Similarity=0.281 Sum_probs=179.7
Q ss_pred hhhhhHHHHHhhcCCCc--------cccccC-CCCChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHH
Q psy7925 3 YVVQIMIGVANIFGETK--------YFTFEN-STTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCT 73 (472)
Q Consensus 3 ~~~~i~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~ 73 (472)
++.+++.|+..++|... +++-++ -.+++.+++..+..+-|+|.|.|.+...++|.|||+|++|||+.-...
T Consensus 197 ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik~vfw 276 (541)
T COG0833 197 IIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIKQVFW 276 (541)
T ss_pred HHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHHHHHHH
Confidence 56778888888884322 222111 236789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccChhhh--h-------cchhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7925 74 LVTVVYVLTNVAFYTTLSPAEV--L-------NSEAVAVTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGA 144 (472)
Q Consensus 74 ~~~~~y~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~ 144 (472)
.+.++|++..+.....+|++|- . .+++....+-+.+....+.+++++++++.+++.|+.+|..||.+|+||
T Consensus 277 RIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA 356 (541)
T COG0833 277 RILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLA 356 (541)
T ss_pred HHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 9999999999999999998772 1 222444445455544456888877777777777776666666666666
Q ss_pred hcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhHhhhccCCCchhHHHHHHHHhhhheecchhhhhccccccccc
Q psy7925 145 CEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWT 224 (472)
Q Consensus 145 ~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~ 224 (472)
+||+.|++|+
T Consensus 357 ~~g~APk~f~---------------------------------------------------------------------- 366 (541)
T COG0833 357 KQGKAPKIFA---------------------------------------------------------------------- 366 (541)
T ss_pred hcCCCchHHH----------------------------------------------------------------------
Confidence 6665555555
Q ss_pred ccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHH
Q psy7925 225 FANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFV 304 (472)
Q Consensus 225 ~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~ 304 (472)
T Consensus 367 -------------------------------------------------------------------------------- 366 (541)
T COG0833 367 -------------------------------------------------------------------------------- 366 (541)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHH
Q psy7925 305 ALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMS------SNIFALINYVGFATW 378 (472)
Q Consensus 305 l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l~------~~~~~l~~l~~~~~l 378 (472)
|+| |+|.|..++..+.+.+++..+. ..++++.+++++...
T Consensus 367 ---------------------------------~~~-r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~ 412 (541)
T COG0833 367 ---------------------------------KVD-RRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGF 412 (541)
T ss_pred ---------------------------------hhC-CCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHH
Confidence 444 7788888888888877777763 257889999999999
Q ss_pred HHHHHHHhHHHhhhhcC----CCC-CCCcccch--hHHHHHHHHHHHHHhh
Q psy7925 379 LSIGVGVLCLPVLRYTQ----PDL-PRPIKVHL--IFPAAYLIASVFVTLV 422 (472)
Q Consensus 379 ~~yil~~~a~~~l~~~~----~~~-~~~~~~~~--~~~il~iv~~l~li~~ 422 (472)
+.|+..+++.+++|+.. ++. +-|||.|. +.++.+++.|..+++.
T Consensus 413 i~W~~I~~shirFR~A~~~QG~s~~~L~yks~~~p~g~~~~~~~~~li~i~ 463 (541)
T COG0833 413 IAWGSICLSHIRFRRAMKAQGRSLDELPYKSPFGPYGPIYGLILCILILIG 463 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChhhcCccCCCccHHHHHHHHHHHHHHHH
Confidence 99999999999998732 222 35899987 8888888888777655
No 28
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.91 E-value=1.5e-22 Score=212.76 Aligned_cols=197 Identities=28% Similarity=0.416 Sum_probs=158.6
Q ss_pred CChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcc-h-hHHHHH
Q psy7925 28 TDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNS-E-AVAVTF 105 (472)
Q Consensus 28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-~-~~~~~~ 105 (472)
....++..++...+|+|.|+|.+++++||+|||+|++|||+..+.+.++++|++.++......+.+++..+ . .+....
T Consensus 198 ~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 277 (466)
T COG0531 198 GSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALA 277 (466)
T ss_pred chHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHH
Confidence 44568999999999999999999999999999999999999999999999999999999999997655543 0 111111
Q ss_pred HHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhHhh
Q psy7925 106 ANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQ 185 (472)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~~~ 185 (472)
.....+.
T Consensus 278 ~~~~~g~------------------------------------------------------------------------- 284 (466)
T COG0531 278 ALFGGGN------------------------------------------------------------------------- 284 (466)
T ss_pred HHHcCcc-------------------------------------------------------------------------
Confidence 1111110
Q ss_pred hccCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHH
Q psy7925 186 VTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVY 265 (472)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY 265 (472)
T Consensus 285 -------------------------------------------------------------------------------- 284 (466)
T COG0531 285 -------------------------------------------------------------------------------- 284 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCC
Q psy7925 266 VLTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMT 345 (472)
Q Consensus 266 ~~~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~t 345 (472)
....++.+.++.+.+++.+++..+.+|..++|+|||.+|++|+|+|+|+++
T Consensus 285 -----------------------------~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~~~~~~~~~~~~ 335 (466)
T COG0531 285 -----------------------------WGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRT 335 (466)
T ss_pred -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHhCCCCCC
Confidence 001223456677888888999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHH-HHHhhh----hHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccch
Q psy7925 346 PTPAVLTIAFLSL-LYLMSS----NIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHL 406 (472)
Q Consensus 346 P~~al~~~~~i~~-ii~l~~----~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~ 406 (472)
|+++++++.+++. +..... .++.+.++.+...++.|.+...+..++|+|+++.+|+++.+.
T Consensus 336 P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (466)
T COG0531 336 PVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDLKRPFRLPL 401 (466)
T ss_pred CHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccc
Confidence 9999999999999 333322 367888999999999999999999999998777777777665
No 29
>KOG1286|consensus
Probab=99.90 E-value=6e-23 Score=222.18 Aligned_cols=136 Identities=18% Similarity=0.282 Sum_probs=110.4
Q ss_pred CChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhh--hhcchhHHHHH
Q psy7925 28 TDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAE--VLNSEAVAVTF 105 (472)
Q Consensus 28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~--~~~~~~~~~~~ 105 (472)
.++.|++.++.++.|+|.|+|.++..+||+|||+|++|+|+..++.+++++|++..+.+...+|++| +.++.+....|
T Consensus 229 ~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF 308 (554)
T KOG1286|consen 229 FGFKGVLSGAATAFFSFIGFELVATTAEEAKNPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPF 308 (554)
T ss_pred CCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHH
Confidence 3489999999999999999999999999999999999999999999999999999999999999988 77665444444
Q ss_pred H-HHhccchhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCch
Q psy7925 106 A-NRIFGPIAW---TLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPT 164 (472)
Q Consensus 106 ~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~ 164 (472)
. .....+... ++++.+++++.++.|+.++.+||.+|+||+||++|++|+++|++ ++|.
T Consensus 309 ~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~-g~P~ 370 (554)
T KOG1286|consen 309 VIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRR-GVPL 370 (554)
T ss_pred HHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCC-CCch
Confidence 3 333344444 88888888888888888888777777777777777666666644 4443
No 30
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.90 E-value=2.6e-22 Score=229.43 Aligned_cols=155 Identities=10% Similarity=0.008 Sum_probs=126.8
Q ss_pred hHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCC--hhhhcccCCCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy7925 298 WTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMP--EILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGF 375 (472)
Q Consensus 298 ~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP--~~f~kv~~k~~tP~~al~~~~~i~~ii~l~~~~~~l~~l~~~ 375 (472)
+++.++++++++++.++.+.+++|+++++||||++| ++|+|+|+|+++|++++++++++++++++..+++.+..+.+.
T Consensus 388 ~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~l~~ia~lis~ 467 (953)
T TIGR00930 388 PLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAELNTIAPIISN 467 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 456678889999999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHhhhhcC-CCCCCCcccc-hhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHhc
Q psy7925 376 ATWLSIGVGVLCLPVLRYTQ-PDLPRPIKVH-LIFPAAYLIASVFVTLVPMMASPVETGIGCLMIATSVPVYMVFIAWRN 453 (472)
Q Consensus 376 ~~l~~yil~~~a~~~l~~~~-~~~~~~~~~~-~~~~il~iv~~l~li~~~~~~~~~~~~i~~~v~~lgl~iy~~~~~~~~ 453 (472)
.++++|.+.+++.+++++++ |+++..||.. .++++++++.|+++.+.. ..+..++.+++++.+|.++.+++.
T Consensus 468 ~fLl~Y~lvnla~~~l~~~~~p~~RP~fk~~~~~~sllG~l~c~~lmf~i------~w~~ali~~~i~~~ly~~~~~~~~ 541 (953)
T TIGR00930 468 FFLASYALINFSCFHASLLRSPGWRPRFKYYHWWLSLLGASLCCAIMFLI------SWWAALVAMVIALFLYKYVTYKKP 541 (953)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCccccchHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhccCC
Confidence 99999999999999887654 4443344543 388999999998885542 234555566667777776666655
Q ss_pred cCccc
Q psy7925 454 KPKVF 458 (472)
Q Consensus 454 ~~~~~ 458 (472)
+.++.
T Consensus 542 ~~~wg 546 (953)
T TIGR00930 542 DVNWG 546 (953)
T ss_pred CCCcc
Confidence 55443
No 31
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.90 E-value=2.4e-21 Score=207.95 Aligned_cols=103 Identities=14% Similarity=0.176 Sum_probs=87.4
Q ss_pred HHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHhh---h------hHHHHH
Q psy7925 300 LPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMS---S------NIFALI 370 (472)
Q Consensus 300 i~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l~---~------~~~~l~ 370 (472)
+.+..+.+.+++.++++++.+|.+++++|||++||+|+|+| |+++|+++++++.++..+..+. . .++.+.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~n-k~g~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~ 398 (496)
T PRK15238 320 TGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLN-KNGMPANAMWLQCIIVSVFILLVSFGGDAASAFFNILT 398 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 34667788999999999999999999999999999999999 8999999999998777766432 1 156788
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCccc
Q psy7925 371 NYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKV 404 (472)
Q Consensus 371 ~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~ 404 (472)
++.++..++.|++...+.+++|| +|+.+||++.
T Consensus 399 ~l~~~~~li~y~~~~~a~i~~r~-~~~~~r~~~~ 431 (496)
T PRK15238 399 LMANVSMTLPYLFLAGAFPFFKK-KKDIDRPFVV 431 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCcee
Confidence 99999999999999999999876 4666777665
No 32
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.89 E-value=2.1e-22 Score=209.58 Aligned_cols=148 Identities=20% Similarity=0.256 Sum_probs=108.2
Q ss_pred hhhhhHHHHHhhcCC---C------ccccccC--CCCChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHH
Q psy7925 3 YVVQIMIGVANIFGE---T------KYFTFEN--STTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYIS 71 (472)
Q Consensus 3 ~~~~i~~~~~~~~~~---~------~~~~~~~--~~~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~ 71 (472)
++.+|+.|++.+++. + +|..-+| -++++.|++.++..++|+|.|.|.++..+.|+|||+|++|||+-..
T Consensus 164 Ii~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkAin~V 243 (462)
T COG1113 164 IIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKAINSV 243 (462)
T ss_pred HHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHHHhhh
Confidence 567788888888731 1 1221111 3678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHHHh-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy7925 72 CTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFANRI-FGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMP 150 (472)
Q Consensus 72 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p 150 (472)
...+.++|+...+......|++++..++.|.....++. ....+.++++.++++..++.|+.++.+||.+|++|+||..|
T Consensus 244 ~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~AP 323 (462)
T COG1113 244 IWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAP 323 (462)
T ss_pred hHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcccccccccchHHHHHhhcCccc
Confidence 99999999999999999999999888877766665554 33345777755555444444444444444443333333333
No 33
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.88 E-value=3.5e-21 Score=201.34 Aligned_cols=210 Identities=28% Similarity=0.437 Sum_probs=156.8
Q ss_pred CChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchh---HHHH
Q psy7925 28 TDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEA---VAVT 104 (472)
Q Consensus 28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~---~~~~ 104 (472)
+++.++..++...+|+|.|||.+++++||.|| ||+|||+..+.+++.+.|.+.+.+.....|+++...+++ +...
T Consensus 185 ~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (426)
T PF13520_consen 185 SGWPGFLAGFSVAFFAFSGFEAIASLAEENKN--KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAV 262 (426)
T ss_dssp SSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHH
T ss_pred ccccchhhHHHHHHhhcccccccccccccccc--hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccch
Confidence 35556889999999999999999999999777 899999999999999999999999999999988876543 4555
Q ss_pred HHHHhccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhH
Q psy7925 105 FANRIFGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTM 183 (472)
Q Consensus 105 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~ 183 (472)
+.++..+.. ...+.+.++++.+++.|+
T Consensus 263 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------------------------------------------------- 290 (426)
T PF13520_consen 263 LASAVGGSWLAIIVSIAAILSLFGSINA---------------------------------------------------- 290 (426)
T ss_dssp HHHHHHCCTHHHHHHHHHHHHHHHHHHH----------------------------------------------------
T ss_pred hhccccccccccccccccccccccccch----------------------------------------------------
Confidence 666665443 466655555555555555
Q ss_pred hhhccCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHH
Q psy7925 184 IQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTV 263 (472)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~v 263 (472)
T Consensus 291 -------------------------------------------------------------------------------- 290 (426)
T PF13520_consen 291 -------------------------------------------------------------------------------- 290 (426)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCC
Q psy7925 264 VYVLTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTK 343 (472)
Q Consensus 264 lY~~~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~ 343 (472)
.+.+.+|.+++++|||++|++|+|+| |+
T Consensus 291 ---------------------------------------------------~~~~~sR~l~~~a~d~~lP~~~~~~~-k~ 318 (426)
T PF13520_consen 291 ---------------------------------------------------FIFGASRLLYAMARDGVLPKWFAKVN-KF 318 (426)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHTTSSSGGGGTTS-SS
T ss_pred ---------------------------------------------------hhcchhhcccccccccchhhhhhhcc-cc
Confidence 44555555555666666666677777 78
Q ss_pred CCchhHHHHHHHHHHHHHh-h-----hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCC-CcccchhHHHHHHHHH
Q psy7925 344 MTPTPAVLTIAFLSLLYLM-S-----SNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPR-PIKVHLIFPAAYLIAS 416 (472)
Q Consensus 344 ~tP~~al~~~~~i~~ii~l-~-----~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~-~~~~~~~~~il~iv~~ 416 (472)
++|++++++..+++.+..+ . .+++.+.+..++.....|.+...+.+++|+|+|+.+| +++ ...++++.+.+
T Consensus 319 ~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~i~~~~~~ 396 (426)
T PF13520_consen 319 GTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVILAVLFLRRKRPDLKRIPYR--PPVGIIGIIII 396 (426)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHSCSSGH-HHH--HHHHHHHHHHH
T ss_pred CCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCCCCcc--hHHHHHHHHHH
Confidence 8888888888877755543 2 2578889999999999999999999999999887655 333 24555556666
Q ss_pred HHHHhhccc
Q psy7925 417 VFVTLVPMM 425 (472)
Q Consensus 417 l~li~~~~~ 425 (472)
++.+....+
T Consensus 397 ~~~~~~~~~ 405 (426)
T PF13520_consen 397 LFVIIASFF 405 (426)
T ss_dssp HHHHHHCCC
T ss_pred HHHHHHHHH
Confidence 555555444
No 34
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.88 E-value=1.9e-20 Score=199.99 Aligned_cols=102 Identities=20% Similarity=0.214 Sum_probs=76.4
Q ss_pred HHHhhhchhhhhhhhhHHHHHhhhcCCCCh--hhhcccCCCCCchhHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHH
Q psy7925 305 ALSTFGGVNGIILTTSRLFYAGACEGQMPE--ILTMIQVTKMTPTPAVLTIAFLSLLYLMS-----SNIFALINYVGFAT 377 (472)
Q Consensus 305 l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~--~f~kv~~k~~tP~~al~~~~~i~~ii~l~-----~~~~~l~~l~~~~~ 377 (472)
+++.+++.++.+.+.||++|+++|||.+|+ +|+|+|||+++|++++++..+++.++.+. ..++.+.++.++..
T Consensus 306 ~i~~~~~~~~~~~~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~~ 385 (475)
T TIGR03428 306 AIAILVCTLAIQTAGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLI 385 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 345556667777778888888888888884 78888888999999988888887766653 35678889999999
Q ss_pred HHHHHHHHhHHHhhhhcC-C-----CCCCCcccch
Q psy7925 378 WLSIGVGVLCLPVLRYTQ-P-----DLPRPIKVHL 406 (472)
Q Consensus 378 l~~yil~~~a~~~l~~~~-~-----~~~~~~~~~~ 406 (472)
+..|.+.....+..|+|+ | ..++||+.+.
T Consensus 386 ~~~Y~~~~~~~l~~~~~~~~~~~~~~~~g~f~lg~ 420 (475)
T TIGR03428 386 YLAYLLVTVPLLLRRLRGWPRGDQTDPAGLFSLGR 420 (475)
T ss_pred HHHHHHHHHHHHHHHHhccCCccCCCCCCCCCCch
Confidence 999999888877665442 1 2356677664
No 35
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.87 E-value=3.1e-23 Score=221.11 Aligned_cols=186 Identities=24% Similarity=0.313 Sum_probs=149.3
Q ss_pred ChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcch-----hHHH
Q psy7925 29 DVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSE-----AVAV 103 (472)
Q Consensus 29 ~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~-----~~~~ 103 (472)
++.+++.++..++|+|.|+|.++..+||+|||+||+|||+..++++++++|++...+.....|+++....+ .+..
T Consensus 198 ~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 277 (478)
T PF00324_consen 198 GFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFV 277 (478)
T ss_pred chhHHHHhhhhhhcccccccccccccccCCCchhhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchh
Confidence 48899999999999999999999999999999999999999999999999999999999999887754332 1222
Q ss_pred HHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhH
Q psy7925 104 TFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTM 183 (472)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~ 183 (472)
...++..++..
T Consensus 278 ~~~~~~~~~~~--------------------------------------------------------------------- 288 (478)
T PF00324_consen 278 IAAQYSGGPWL--------------------------------------------------------------------- 288 (478)
T ss_pred hhhhhcccccc---------------------------------------------------------------------
Confidence 22221111100
Q ss_pred hhhccCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHH
Q psy7925 184 IQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTV 263 (472)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~v 263 (472)
T Consensus 289 -------------------------------------------------------------------------------- 288 (478)
T PF00324_consen 289 -------------------------------------------------------------------------------- 288 (478)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCC
Q psy7925 264 VYVLTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTK 343 (472)
Q Consensus 264 lY~~~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~ 343 (472)
..++.++.+.+.+++.++.++++||++++|+|||.+|+++.+.|+|+
T Consensus 289 ---------------------------------~~i~~~~~l~s~~s~~~~~~~~~sR~l~ama~dg~lP~~~~~~~~k~ 335 (478)
T PF00324_consen 289 ---------------------------------AWIVNAGILISAFSSANASLYAASRLLYAMARDGLLPKKFFARHPKN 335 (478)
T ss_pred ---------------------------------cceecccchhhhhhhhhhhhcccceeehhhhhhhhhhhhhhhhhhcC
Confidence 01123566778888999999999999999999999998888888899
Q ss_pred CCchhHHHHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCC
Q psy7925 344 MTPTPAVLTIAFLSLLYLMSS------NIFALINYVGFATWLSIGVGVLCLPVLRYTQP 396 (472)
Q Consensus 344 ~tP~~al~~~~~i~~ii~l~~------~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~ 396 (472)
|+|+++++++.+++.+..+.. .++.+.+..++..+..|.+...+.+++|++.+
T Consensus 336 ~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~r~~~~ 394 (478)
T PF00324_consen 336 GVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNISTISNLIVYILINISYIRFRKKFK 394 (478)
T ss_pred CceEEEEeeehhchheeeeeccchhhHHHHHHhhhhhhhhhhHHHhhhhhhhhhhhhhc
Confidence 999999999988888887632 24556788888999999999999998887643
No 36
>KOG1289|consensus
Probab=99.79 E-value=2.3e-18 Score=182.49 Aligned_cols=237 Identities=19% Similarity=0.247 Sum_probs=164.5
Q ss_pred CChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccC--hhhhhcch--hHHH
Q psy7925 28 TDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLS--PAEVLNSE--AVAV 103 (472)
Q Consensus 28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~--~~~~~~~~--~~~~ 103 (472)
+...+|++++....|.+.|+|.++|++||+|||+|+.||||+.+..+..++-....+.+...++ .+.+.+++ .|..
T Consensus 249 ~~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~ 328 (550)
T KOG1289|consen 249 NNGWAFILGFFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIV 328 (550)
T ss_pred cchHHHHHhhccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHH
Confidence 3567999999999999999999999999999999999999999999999887666666666665 34444544 5677
Q ss_pred HHHHHhccchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHh
Q psy7925 104 TFANRIFGPIAW-TLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILT 182 (472)
Q Consensus 104 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~ 182 (472)
.+..+..|..+. .+..
T Consensus 329 ~i~~~~lg~k~~v~~~~--------------------------------------------------------------- 345 (550)
T KOG1289|consen 329 QIYYQALGKKGAVFLLS--------------------------------------------------------------- 345 (550)
T ss_pred HHHHHhcCCCceEehhH---------------------------------------------------------------
Confidence 776666666432 1222
Q ss_pred HhhhccCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHH
Q psy7925 183 MIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVT 262 (472)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~ 262 (472)
T Consensus 346 -------------------------------------------------------------------------------- 345 (550)
T KOG1289|consen 346 -------------------------------------------------------------------------------- 345 (550)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCC--hhhhccc
Q psy7925 263 VVYVLTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMP--EILTMIQ 340 (472)
Q Consensus 263 vlY~~~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP--~~f~kv~ 340 (472)
..+++.+-+..+.+...||..|+.+|||.|| +++.|+|
T Consensus 346 ----------------------------------------l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~ 385 (550)
T KOG1289|consen 346 ----------------------------------------LIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVN 385 (550)
T ss_pred ----------------------------------------HHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecC
Confidence 2233333444455556677777777777777 7889999
Q ss_pred CCCCCchhHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccch------hHH
Q psy7925 341 VTKMTPTPAVLTIAFLSLLYLMS-----SNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHL------IFP 409 (472)
Q Consensus 341 ~k~~tP~~al~~~~~i~~ii~l~-----~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~------~~~ 409 (472)
|++++|.+|+++..+++.++.+. ..++++.+.......++|....++.+.++|+ +-.+.||.... ...
T Consensus 386 ~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Alfs~a~i~l~~Ay~iP~~~rlf~~r~-~f~~gp~~lGk~s~p~~~i~ 464 (550)
T KOG1289|consen 386 PQTKVPLNAVLLSCIISILLGLLILASATAFNALFSAAAIALFIAYAIPIFCRLFFGRD-DFRPGPFNLGKFSKPIGIIA 464 (550)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHhheeeccc-ccCCCCccccccccchHHHH
Confidence 99999999999999998888773 4788999999999999999888887766654 22234443332 344
Q ss_pred HHHHHHHHHHHhhcccccchh------HHHHHHHHHHHHHHHHHH
Q psy7925 410 AAYLIASVFVTLVPMMASPVE------TGIGCLMIATSVPVYMVF 448 (472)
Q Consensus 410 il~iv~~l~li~~~~~~~~~~------~~i~~~v~~lgl~iy~~~ 448 (472)
+...+.++.++..|....++. ..+.....+++++.|+..
T Consensus 465 v~w~lf~~vil~fP~~~pvT~~~MNya~VV~gg~~lf~li~~~~~ 509 (550)
T KOG1289|consen 465 VLWVLFMIVILCFPSVYPVTADNMNYACVVYGGVMLFCLIYYFVS 509 (550)
T ss_pred HHHHHHHHHHHhCCcccCCCcccCceEEEeehhhhhhhhheeeee
Confidence 444445555555555544333 123333455555455444
No 37
>KOG1287|consensus
Probab=99.62 E-value=4.4e-15 Score=157.01 Aligned_cols=206 Identities=31% Similarity=0.473 Sum_probs=163.9
Q ss_pred hccCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHH
Q psy7925 186 VTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVY 265 (472)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY 265 (472)
+++..+++..+..|+.+- +|+|.|+-..-+..||-++|+||+||++.+ |..+|++.|
T Consensus 196 f~g~~~~~g~i~lafysg----------lfa~~GWd~lN~vteEiknP~ktLP~Ai~i-------------si~lvt~iY 252 (479)
T KOG1287|consen 196 FEGSDTDVGNIALAFYSG----------LFAFSGWDYLNYVTEEIKNPRRTLPRAILI-------------SIPLVTVIY 252 (479)
T ss_pred cccCcCchHHHHHHHHHh----------hhcccCchhhccchHhhcCccccchHHHHH-------------hhHHHHHHH
Confidence 778888888899999887 566777777777779999999999999999 899999999
Q ss_pred HHHHHHHhhccChhhhhcchH---HHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCC
Q psy7925 266 VLTNVAFYTTLSPAEVLNSEA---TFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVT 342 (472)
Q Consensus 266 ~~~~~~~~~~lp~~~l~~~~~---~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k 342 (472)
++.+.+++.++++||+.++.+ .++++..|.++|++.+.+++|++|+.|+.+.+.||.+++++|||+||+.|+++|
T Consensus 253 il~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~-- 330 (479)
T KOG1287|consen 253 VLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFAWAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMIS-- 330 (479)
T ss_pred HHhHhheeEecCHHHhcccchHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhc--
Confidence 999999999999999977654 789999999999999999999999999999999999999999999999999966
Q ss_pred CCCchhHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccchhHHHHHH-HHHHHH
Q psy7925 343 KMTPTPAVLTIAFLSLLYLMS-SNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYL-IASVFV 419 (472)
Q Consensus 343 ~~tP~~al~~~~~i~~ii~l~-~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~~~~il~i-v~~l~l 419 (472)
..+. .-....+.+.+..+. .-..++.++.+.....-++....+..-+.+-|.+ +++...|.=+++..- +..+..
T Consensus 331 -~~~~-TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k-~p~~~rPiKvpl~~p~~~~~~~ 406 (479)
T KOG1287|consen 331 -VRRF-TPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWK-HPPLPRPIKVPLFIPILFLLIC 406 (479)
T ss_pred -CCCC-CChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCCCEeeeeehHHHHHHHH
Confidence 4555 334444444444443 3444577788888888888888888888877643 444556664444443 333333
No 38
>PRK10655 potE putrescine transporter; Provisional
Probab=99.55 E-value=1e-13 Score=146.34 Aligned_cols=88 Identities=17% Similarity=0.308 Sum_probs=69.6
Q ss_pred hhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHH-
Q psy7925 211 IFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFA- 289 (472)
Q Consensus 211 ~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~- 289 (472)
...+|+|.|+|+....+||.|+|+|++||++.. +.+++.++|++.+.+..+.+|.+|+.++++++.
T Consensus 196 ~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~-------------~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~ 262 (438)
T PRK10655 196 AMTLWAFLGLESACANSDAVENPERNVPIAVLG-------------GTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGL 262 (438)
T ss_pred HHHHHHHhhhhhhhhhHHHhhCccccccHHHHH-------------HHHHHHHHHHHHHHHHHhCCCHHHHhhccchHHH
Confidence 346799999999999999999999999999988 889999999999999999999999887666543
Q ss_pred --HHHhccch-hHHHHHHHHHhhhc
Q psy7925 290 --NRIFGPIA-WTLPVFVALSTFGG 311 (472)
Q Consensus 290 --~~~~G~~~-~ii~i~~l~s~~~~ 311 (472)
+...|++. .++.+.++++.+++
T Consensus 263 ~~~~~~g~~~~~~~~~~~~is~~~~ 287 (438)
T PRK10655 263 AFAQMFNPTVGKIVMALMVMSCCGS 287 (438)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHHH
Confidence 34456653 44444444455433
No 39
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.50 E-value=9.9e-14 Score=148.23 Aligned_cols=226 Identities=14% Similarity=0.132 Sum_probs=176.3
Q ss_pred hhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHH-
Q psy7925 211 IFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFA- 289 (472)
Q Consensus 211 ~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~- 289 (472)
...+++|.|+|+.+..+||.|+|+|++||++.. +.+.+.++|+..+++....+|.+|...+++++.
T Consensus 213 ~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~-------------~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~ 279 (471)
T PRK11387 213 VAVNFAFSGTELIGIAAGETENPAKVIPVAIRT-------------TIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVL 279 (471)
T ss_pred HHHHHHHcCHHHHHHHHHHhcChhhHHHHHHHH-------------HHHHHHHHHHHHHHHHheecCccccCccCChHHH
Confidence 346789999999999999999999999999988 888899999999999999999988876555544
Q ss_pred --HHHhccch-hHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHhh---
Q psy7925 290 --NRIFGPIA-WTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMS--- 363 (472)
Q Consensus 290 --~~~~G~~~-~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l~--- 363 (472)
+...++++ .++.+.++++.+++.++.+++.||++|+|||||.+||+|+|+| |+++|+++++++.+.+++..+.
T Consensus 280 ~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~f~~~~-~~~~P~~Ail~~~~~~~l~~~~~~~ 358 (471)
T PRK11387 280 VFEKVGIPYAADIFNFVILTAILSAANSGLYASGRMLWSLSNEGTLPACFARLT-KRGIPLTALSVSMLGGLLALFSSVV 358 (471)
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 33344443 4577888899999999999999999999999999999999999 6799999999886655544432
Q ss_pred ---hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCC-----CCCCcccch--hHHHHHHHHHHHHHhhcccccch--hH
Q psy7925 364 ---SNIFALINYVGFATWLSIGVGVLCLPVLRYTQPD-----LPRPIKVHL--IFPAAYLIASVFVTLVPMMASPV--ET 431 (472)
Q Consensus 364 ---~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~-----~~~~~~~~~--~~~il~iv~~l~li~~~~~~~~~--~~ 431 (472)
..+..+.++.++..++.|++..++.+++|+|+++ .+||||.|. +.+.++++.+++++.......+. ..
T Consensus 359 ~~~~~~~~l~~l~~~~~li~y~~~~~~~i~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 438 (471)
T PRK11387 359 APDTVFVALSAISGFAVVAVWLSICASHFMFRRRHLRDGKALSELAYRAPWYPLTPILGFVLCLLACVGLAFDPSQRIAL 438 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCccHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 1244567888888999999999999998887653 247888887 78888888777765543222221 23
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7925 432 GIGCLMIATSVPVYMVFIA 450 (472)
Q Consensus 432 ~i~~~v~~lgl~iy~~~~~ 450 (472)
+....+++++.+.|..++|
T Consensus 439 ~~~~~~~~~~~~~~~~~~~ 457 (471)
T PRK11387 439 WCGIPFVALCYGAYYLTQR 457 (471)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 4555566666666665433
No 40
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.49 E-value=5.9e-13 Score=141.14 Aligned_cols=90 Identities=19% Similarity=0.325 Sum_probs=72.9
Q ss_pred hhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHHH-
Q psy7925 212 FALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFAN- 290 (472)
Q Consensus 212 ~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~~- 290 (472)
..+|+|.|+|+....+||.|+|+|++||++.. +.+.+.++|+..+.+....+|.+|+..+++++..
T Consensus 199 ~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~-------------s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~ 265 (445)
T PRK10644 199 VTLWSFIGVESASVAAGVVKNPKRNVPIATIG-------------GVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDA 265 (445)
T ss_pred HHHHHHHhHHHHHHHHHHhhCcccchhHHHHH-------------HHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHH
Confidence 46789999999999999999999999999988 8899999999999999999999998776665543
Q ss_pred --HHhccch-hHHHHHHHHHhhhchhh
Q psy7925 291 --RIFGPIA-WTLPVFVALSTFGGVNG 314 (472)
Q Consensus 291 --~~~G~~~-~ii~i~~l~s~~~~~~~ 314 (472)
...|+++ .++.+.++++.+++.++
T Consensus 266 ~~~~~g~~~~~~v~~~~~~s~~~~~~~ 292 (445)
T PRK10644 266 ARMALGDTAGAIVSFCAAAGCLGSLGG 292 (445)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3456654 34555566666666554
No 41
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.47 E-value=1.1e-12 Score=140.21 Aligned_cols=104 Identities=13% Similarity=0.148 Sum_probs=90.7
Q ss_pred chhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHH--
Q psy7925 210 NIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEAT-- 287 (472)
Q Consensus 210 ~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~-- 287 (472)
....+|+|.|+|+....+||.|| +|++||++.. +.+.+.++|+..+.+..+.+|.+|+++.+++
T Consensus 201 ~~~~~~~f~G~e~~~~~a~e~k~-~k~ip~ai~~-------------~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~ 266 (468)
T TIGR03810 201 MLVTVWVFIGIEGASMLSARAEK-RSDVGKATVI-------------GLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSM 266 (468)
T ss_pred HHHHHHHHHhHhHHhhhHhhccC-cccchHHHHH-------------HHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchH
Confidence 34567999999999999999998 8999999888 8999999999999999999999999875554
Q ss_pred --HHHHHhccch-hHHHHHHHHHhhhchhhhhhhhhHHHHHhh
Q psy7925 288 --FANRIFGPIA-WTLPVFVALSTFGGVNGIILTTSRLFYAGA 327 (472)
Q Consensus 288 --l~~~~~G~~~-~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a 327 (472)
..+...|+++ .++.++++++.+++.++++.+.+|++|+|+
T Consensus 267 ~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~a 309 (468)
T TIGR03810 267 AYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMA 309 (468)
T ss_pred HHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567765 567888899999999999999999999997
No 42
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.46 E-value=8.4e-13 Score=141.19 Aligned_cols=223 Identities=13% Similarity=0.072 Sum_probs=143.2
Q ss_pred hhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHH---
Q psy7925 211 IFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEAT--- 287 (472)
Q Consensus 211 ~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~--- 287 (472)
....|+|.|+|+....+||.|+ +|++||++.. +.+++.++|++.+.+..+.+|.+|+.++.++
T Consensus 206 ~~~~~af~G~e~~~~~a~E~k~-~r~iPrai~~-------------~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~ 271 (473)
T TIGR00905 206 LVTLWVFIGIEGAVVSSGRAKN-KSDVGKATVL-------------GTLGALVIYILITLLSLGVLPQQELANLPNPSMA 271 (473)
T ss_pred HHHHHHHHhHHHHHHHHHHHhc-cccchHHHHH-------------HHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHH
Confidence 3467899999999999999999 9999999998 8899999999999999999999999876665
Q ss_pred -HHHHHhccch-hHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHh-hh
Q psy7925 288 -FANRIFGPIA-WTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLM-SS 364 (472)
Q Consensus 288 -l~~~~~G~~~-~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l-~~ 364 (472)
+.+...|+++ .++.+.++++.+++.++++.+.+|++|+|+|||.+|| ... |.+ |...-.....+..++.. ..
T Consensus 272 ~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amardg~lP~---~~~-~v~-~~~tP~~Ai~~~~~i~~~~~ 346 (473)
T TIGR00905 272 AVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKDGLFPK---IFG-RVN-KNGAPSVALLLTNILIQLFL 346 (473)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH---HHH-hhC-ccCCCHHHHHHHHHHHHHHH
Confidence 3445567765 4577778899999999999999999999999999993 433 554 55544554444444433 33
Q ss_pred hHH-----HHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccchhHHHHHHHHHHHHHhhcccccchhHH-HHHHHH
Q psy7925 365 NIF-----ALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETG-IGCLMI 438 (472)
Q Consensus 365 ~~~-----~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~~~~il~iv~~l~li~~~~~~~~~~~~-i~~~v~ 438 (472)
... .+..+..+.....++.......-..+.+++.+.|-+...+.+.+..+..++..+ -.-...+ .....+
T Consensus 347 ~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~ 422 (473)
T TIGR00905 347 LLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVGTYPKIKNRKALIVGVIACVYSIW----LLYAAGLKYLLLGF 422 (473)
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccchHHHHHHHHHHHHHH----HHHHhhHHHHHHHH
Confidence 322 122333333333443333333334444332111221112455666665555532 2222222 222223
Q ss_pred HHHHHHHHHHHHHhccCc
Q psy7925 439 ATSVPVYMVFIAWRNKPK 456 (472)
Q Consensus 439 ~lgl~iy~~~~~~~~~~~ 456 (472)
.+.......|.+++++++
T Consensus 423 ~~~~~g~~~y~~~~~~~~ 440 (473)
T TIGR00905 423 ILYAPGIIFYGRARKERG 440 (473)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 333334455667666654
No 43
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.41 E-value=3.5e-12 Score=135.00 Aligned_cols=218 Identities=15% Similarity=0.171 Sum_probs=165.6
Q ss_pred hhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHH-
Q psy7925 211 IFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFA- 289 (472)
Q Consensus 211 ~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~- 289 (472)
...+|+|.|+|+....+||.|+|+|++||++.. +.+.+.++|++.+.+..+.+|.+|+.++++|+.
T Consensus 194 ~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~-------------~~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~ 260 (435)
T PRK10435 194 LLCLWAFVGVESAAVSTGMVKNPKRTVPLATML-------------GTGLAGIIYIAATQVISGMFPASVMAASGAPFAI 260 (435)
T ss_pred HHHHHHHhhHHHHHHHHHHhhCccccccHHHHH-------------HHHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHH
Confidence 456899999999999999999999999999988 889999999999999999999999987766544
Q ss_pred --HHHhccch-hHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHh----
Q psy7925 290 --NRIFGPIA-WTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLM---- 362 (472)
Q Consensus 290 --~~~~G~~~-~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l---- 362 (472)
+...|+++ .++.+.++++.+++.+++++..+|..++++|||.+||+|+|+| |+++|.++++++.++..++..
T Consensus 261 ~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~lP~~f~k~n-k~g~P~~Al~~~~~~~~~l~~~~~~ 339 (435)
T PRK10435 261 SASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGNFPKVYGEVD-KNGIPKKGLLLAAVKMTALMILITL 339 (435)
T ss_pred HHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44466665 4566778889999999999999999999999999999999999 899999999988766654332
Q ss_pred --------hhhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccchhHHHHHHHHHHHHHhhcccccchhHHHH
Q psy7925 363 --------SSNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGIG 434 (472)
Q Consensus 363 --------~~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~~~~il~iv~~l~li~~~~~~~~~~~~i~ 434 (472)
...++.+.++.++..++.|++...+.+++| +++.++++ ..+.+.++.+.+++.++ .......
T Consensus 340 ~~~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~ir~~--~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~ 409 (435)
T PRK10435 340 MNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIRFE--GVNIRNFV--SLICSVLGCVFCFIALM------GASSFEL 409 (435)
T ss_pred HhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchhHHH--HHHHHHHHHHHHHHHHH------HhhHHHH
Confidence 124667889999999999999999988554 33323322 11455555555555532 1122233
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy7925 435 CLMIATSVPVYMVFIAWR 452 (472)
Q Consensus 435 ~~v~~lgl~iy~~~~~~~ 452 (472)
..+.+++...|+.|.||+
T Consensus 410 ~~~~~~~~~~~~~~~~~~ 427 (435)
T PRK10435 410 AGTFIVSLIILMFYARKM 427 (435)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334555555666554443
No 44
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.38 E-value=1.2e-11 Score=135.40 Aligned_cols=170 Identities=19% Similarity=0.240 Sum_probs=150.1
Q ss_pred hhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHHHH
Q psy7925 212 FALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFANR 291 (472)
Q Consensus 212 ~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~~~ 291 (472)
..+++|.||++....+||.|+|+|++||++.. +.++++++|...+.+..+.+|.+|+..+ +++...
T Consensus 239 ~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~-------------sl~i~~vlY~lv~~~l~~~vp~~~l~~~-~p~~~a 304 (557)
T TIGR00906 239 TCFFAFIGFDAIATTGEEVKNPQRAIPIGIVT-------------SLLVCFVAYFLMSAALTLMMPYYLLDPD-APFPVA 304 (557)
T ss_pred HHHHHHhhHHHHHHhHHhccCccccccHHHHH-------------HHHHHHHHHHHHHHHHhccccHHHhCcC-cHHHHH
Confidence 35688999999999999999999999999999 9999999999999999999999987643 343322
Q ss_pred H---hccch-hHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHhhhhHH
Q psy7925 292 I---FGPIA-WTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIF 367 (472)
Q Consensus 292 ~---~G~~~-~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l~~~~~ 367 (472)
. ..++. .++.++++.+.+++.++.+++.+|++|+|+|||.+|++|+|+|||+++|++++++..+++.++.+..+++
T Consensus 305 ~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~ 384 (557)
T TIGR00906 305 FEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLK 384 (557)
T ss_pred HHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHH
Confidence 2 22332 4567788889999999999999999999999999999999999999999999999999998888887889
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhhcC
Q psy7925 368 ALINYVGFATWLSIGVGVLCLPVLRYTQ 395 (472)
Q Consensus 368 ~l~~l~~~~~l~~yil~~~a~~~l~~~~ 395 (472)
.+.++.+++.++.|.+...+.+++|+|+
T Consensus 385 ~l~~l~sig~ll~y~lv~~~~l~lR~~~ 412 (557)
T TIGR00906 385 ALVDLLSIGTLLAYSLVAACVLILRYQP 412 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999764
No 45
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.36 E-value=6.6e-12 Score=133.64 Aligned_cols=224 Identities=17% Similarity=0.152 Sum_probs=170.2
Q ss_pred hhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHHH
Q psy7925 211 IFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFAN 290 (472)
Q Consensus 211 ~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~~ 290 (472)
...+++|.|+|+....+||.|+|+|++||++.. +++.+.++|+.........+|.+|+....+++..
T Consensus 206 ~~~~fsf~G~e~~~~~a~E~knP~k~iPrAi~~-------------~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~ 272 (457)
T PRK10580 206 QMVMFAYGGIEIIGITAGEAKDPEKSIPRAINS-------------VPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVL 272 (457)
T ss_pred HHHHHHHhCHHHHHHHHHHhcChhhHHHHHHHH-------------HHHHHHHHHHHHHHHHheecccCCCCccCChHHH
Confidence 456789999999999999999999999999887 7778889999999888888899998765555443
Q ss_pred HH--hccc--hhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHhh---
Q psy7925 291 RI--FGPI--AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMS--- 363 (472)
Q Consensus 291 ~~--~G~~--~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l~--- 363 (472)
.. .|.. ..++.+.++.+.+++.++++++.||.+++|+|||.+||+|+|+| |+++|+++++++.+..++....
T Consensus 273 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~~~~kv~-~~~~P~~Ai~~~~~~~~~~~~~~~~ 351 (457)
T PRK10580 273 TFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKTS-RRGIPWVTVLVMTTALLFAVYLNYI 351 (457)
T ss_pred HHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 22 2222 24466667789999999999999999999999999999999999 5899999999887655443321
Q ss_pred ---hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCC---CCCCcccch--hHHHHHHHHHHHHHhhc-ccc-cchhHHH
Q psy7925 364 ---SNIFALINYVGFATWLSIGVGVLCLPVLRYTQPD---LPRPIKVHL--IFPAAYLIASVFVTLVP-MMA-SPVETGI 433 (472)
Q Consensus 364 ---~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~---~~~~~~~~~--~~~il~iv~~l~li~~~-~~~-~~~~~~i 433 (472)
..++.+.++.++..++.|.+...+.+++|+|+++ .++|||.|. ..+.++++.+.+++... ..+ .+...+.
T Consensus 352 ~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~lr~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 431 (457)
T PRK10580 352 MPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKFKVPGGVATTIGGLIFLVFIIGLIGYHPDTRISLYV 431 (457)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccCCccHHHHHHHHHHHHHHHHHHHCccHHHHHHH
Confidence 3356788999999999999999999999977432 234788775 66666666666554332 122 2233456
Q ss_pred HHHHHHHHHHHHHHH
Q psy7925 434 GCLMIATSVPVYMVF 448 (472)
Q Consensus 434 ~~~v~~lgl~iy~~~ 448 (472)
...++.++.+.|..+
T Consensus 432 ~~~~~~~~~~~y~~~ 446 (457)
T PRK10580 432 GFAWIVLLLIGWMFK 446 (457)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666677777777654
No 46
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.35 E-value=5.6e-12 Score=134.78 Aligned_cols=197 Identities=16% Similarity=0.161 Sum_probs=159.4
Q ss_pred chhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHH
Q psy7925 210 NIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFA 289 (472)
Q Consensus 210 ~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~ 289 (472)
.....|+|.|+|+....+||.|+|+|++||++.. +.+.+.++|.+...+.....|.||+.++++++.
T Consensus 217 ~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~-------------~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~ 283 (469)
T PRK11049 217 FQIAVFAFVGIELVGTTAAETKDPEKSLPRAINS-------------IPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFV 283 (469)
T ss_pred HHHHHHHHhcHHHHHHHHHHhcCHhhHHHHHHHH-------------HHHHHHHHHHHHHHHHeeecCccccCccCCcHH
Confidence 3456899999999999999999999999999865 678889999999999998899999877666654
Q ss_pred HHH---hccc-hhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHH---h
Q psy7925 290 NRI---FGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYL---M 362 (472)
Q Consensus 290 ~~~---~G~~-~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~---l 362 (472)
... .++. +.++.+.++++.+++.++.+++.||++|+|+|||.+|++|+|+| |+++|+++++++.++..+.. .
T Consensus 284 ~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~-~~~tP~~Ai~~~~~~~~~~~~~~~ 362 (469)
T PRK11049 284 ELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKAFAKLS-KRAVPAKGLTFSCICLLGGVVLLY 362 (469)
T ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 433 3333 35677788899999999999999999999999999999999999 55999999998877654322 1
Q ss_pred h-----hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCC--CCcccch--hHHHHHHHHHHHHH
Q psy7925 363 S-----SNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLP--RPIKVHL--IFPAAYLIASVFVT 420 (472)
Q Consensus 363 ~-----~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~--~~~~~~~--~~~il~iv~~l~li 420 (472)
. ..++.+.+..++...+.|++...+.+++|+|+|+.+ ||||.|. +.++++++.+.+.+
T Consensus 363 ~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~p~~~~~~pf~~p~~~~~~~~~~~~~~~~~ 429 (469)
T PRK11049 363 VNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVYRKQRPHLHEKSIYKMPLGKLMCWVCMAFFAFVL 429 (469)
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccCcCcchHHHHHHHHHHHHH
Confidence 1 245667788888999999999999999999988765 5798876 55555555554443
No 47
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.33 E-value=3.7e-11 Score=128.53 Aligned_cols=58 Identities=10% Similarity=0.219 Sum_probs=53.5
Q ss_pred hhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcc
Q psy7925 214 LINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNS 284 (472)
Q Consensus 214 l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~ 284 (472)
+++|.|+|+....+||.|+|+|++||++.. +++.+.++|...+.+....+|.+|+..+
T Consensus 204 ~~af~G~e~~~~~a~E~knP~r~iPrAi~~-------------~~~~~~~~y~l~~~~~~~~~~~~~~~~~ 261 (474)
T TIGR03813 204 FLFYAGMEMNAVHVKDVDNPDKNYPIAILI-------------AALGTVLIFVLGTLAIAFIIPREDISLT 261 (474)
T ss_pred HHHHhchhHhHHHHHhccCcccchhHHHHH-------------HHHHHHHHHHHHHHHHHhccCHhhcccc
Confidence 578999999999999999999999999998 8899999999999999999999987543
No 48
>PRK15049 L-asparagine permease; Provisional
Probab=99.33 E-value=9.1e-12 Score=134.42 Aligned_cols=203 Identities=13% Similarity=0.132 Sum_probs=166.2
Q ss_pred hhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHHHH
Q psy7925 212 FALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFANR 291 (472)
Q Consensus 212 ~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~~~ 291 (472)
...++|.|+|+....+||.|+|+|++||++.. +.+.+.++|+.........+|.+|+..+.+|+...
T Consensus 228 ~~~faf~G~e~i~~~aeE~knP~r~iPrAi~~-------------~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~ 294 (499)
T PRK15049 228 GVVFAFASIEMVGTAAGECKDPQTMVPKAINS-------------VIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTF 294 (499)
T ss_pred HHHHHHhhHHHHHHHHHHhcChhhHHHHHHHH-------------HHHHHHHHHHHHHHHHheecchhccCcCCCHHHHH
Confidence 45688999999999999999999999999988 78889999999999999999999988777766554
Q ss_pred H---hccc-hhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHh-----
Q psy7925 292 I---FGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLM----- 362 (472)
Q Consensus 292 ~---~G~~-~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l----- 362 (472)
+ .+++ +.++.+.++++.+++.++.+++.||++|+|||||.+||+|+|+| |+++|.++++++.+++++..+
T Consensus 295 ~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP~~f~kv~-k~~~P~~Ail~~~~i~~l~~~l~~~~ 373 (499)
T PRK15049 295 FSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSFMAKMS-RQHVPYAGILATLVVYVVGVFLNYLV 373 (499)
T ss_pred HHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 3 3333 35677888899999999999999999999999999999999999 889999999988777655432
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCC---CCCCcccch--hHHHHHHHHHHHHHhhcccccc
Q psy7925 363 -SSNIFALINYVGFATWLSIGVGVLCLPVLRYTQPD---LPRPIKVHL--IFPAAYLIASVFVTLVPMMASP 428 (472)
Q Consensus 363 -~~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~---~~~~~~~~~--~~~il~iv~~l~li~~~~~~~~ 428 (472)
...++.+.++.++..++.|.+..++.+++|++.++ .++|||.|. +.+.++++.+++++....+..|
T Consensus 374 ~~~~f~~l~~~~~~~~li~y~~~~~~~l~~R~~~~~~~~~~~pf~~~~~p~~~~~~l~~~~~~~~~~~~~~~ 445 (499)
T PRK15049 374 PSRVFEIVLNFASLGIIASWAFIIVCQMRLRKAIKEGKAADVSFKLPGAPFTSWLTLLFLLSVLVLMAFDYP 445 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccCccHHHHHHHHHHHHHHHHHHHcCc
Confidence 13477889999999999999999999999876432 356899886 5666666666555444444434
No 49
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.32 E-value=8.8e-12 Score=132.36 Aligned_cols=223 Identities=18% Similarity=0.174 Sum_probs=161.9
Q ss_pred hhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcch-HHH-
Q psy7925 211 IFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSE-ATF- 288 (472)
Q Consensus 211 ~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~-~~l- 288 (472)
...+|+|.|+|.....+||.|+|+|++||++.. +...+.++|+.......+.+|.||....+ +++
T Consensus 208 ~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~-------------~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~ 274 (452)
T TIGR01773 208 LVTMFSFMGTEIVTIAAAESSNPIKSITRATNS-------------VIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYV 274 (452)
T ss_pred HHHHHHhccHHHHhHHHHhhcChhhHHHHHHHH-------------HHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHH
Confidence 346889999999999999999999999999866 67778889999888888888876643222 132
Q ss_pred --HHHHhccch-hHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHhh--
Q psy7925 289 --ANRIFGPIA-WTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMS-- 363 (472)
Q Consensus 289 --~~~~~G~~~-~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l~-- 363 (472)
.+...++.+ .++.+.++++.+++.++.+++.||.+++++|||.+||+|+|+| |+++|+++++++.+++++..+.
T Consensus 275 ~~~~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~v~-~~~~P~~Ail~~~~~~~~~~l~~~ 353 (452)
T TIGR01773 275 AVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTTSRMLYSLAERGDAPRVFMKLN-KKGVPVQAVLASTFFSFLTVVVNY 353 (452)
T ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHc
Confidence 233333443 4567778889999999999999999999999999999999999 7899999999998888776553
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCC--cccch--hHHHHHHHHHHHHHhhc-cccc-chhHHH
Q psy7925 364 ----SNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRP--IKVHL--IFPAAYLIASVFVTLVP-MMAS-PVETGI 433 (472)
Q Consensus 364 ----~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~--~~~~~--~~~il~iv~~l~li~~~-~~~~-~~~~~i 433 (472)
..++.+.+..+...++.|.+...+.+++|+|+|+.+|+ +|.+. +.+..+++.+.+++... +.+. ......
T Consensus 354 ~~~~~~f~~l~~~~~~~~~~~y~~~~~~~i~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 433 (452)
T TIGR01773 354 FAPDKVFLFLVNSSGAIALLVYLVIAVSQLRMRKKLKANGEAIKIRMWLYPWLTWLVIIFICGILVSMLFIPSMRDEVLL 433 (452)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCCccHHHHHHHHHHHHHHHHHHHcccccHHHHH
Confidence 23456778888888999999999999999877665454 44442 44444444443333322 1222 222334
Q ss_pred HHHHHHHHHHHHHH
Q psy7925 434 GCLMIATSVPVYMV 447 (472)
Q Consensus 434 ~~~v~~lgl~iy~~ 447 (472)
...+.......|++
T Consensus 434 ~~~~~~~~~~~y~~ 447 (452)
T TIGR01773 434 TGLLTIIVLCSYLV 447 (452)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444544544
No 50
>PRK11021 putative transporter; Provisional
Probab=99.31 E-value=9.3e-12 Score=130.57 Aligned_cols=189 Identities=19% Similarity=0.208 Sum_probs=155.6
Q ss_pred hhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHH---
Q psy7925 211 IFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEAT--- 287 (472)
Q Consensus 211 ~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~--- 287 (472)
...+|+|.|+|+....+||.|+|+|++||++.+ +.+.++++|+..+.+.....|.+|..+.+++
T Consensus 184 ~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~-------------~~~~~~~lYil~~~~~~~~~~~~~~~~~~~~~~~ 250 (410)
T PRK11021 184 GVMFWCFVGIEAFAHLASEFKNPERDFPRALMI-------------GLLLAGLVYWACTVVVLHFPAYGDKQAAAASLPG 250 (410)
T ss_pred HHHHHHHhcHHHHHhhHHhccCccccccHHHHH-------------HHHHHHHHHHHHHHHHHhcCCCcchhhccccHHH
Confidence 446789999999999999999999999999998 8899999999999888777766555433332
Q ss_pred HHHHHhccch-hHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHhh---
Q psy7925 288 FANRIFGPIA-WTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMS--- 363 (472)
Q Consensus 288 l~~~~~G~~~-~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l~--- 363 (472)
..+...|+.+ .++.+..+++.+++.++++++.+|++|+|+|||.+||+|+|+| |+++|.++++++.+++.+..+.
T Consensus 251 ~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k~~-~~~tP~~ail~~~~i~~~~~l~~~~ 329 (410)
T PRK11021 251 IFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLARLS-ARGVPVNALNAVLGCCAVSILLIYA 329 (410)
T ss_pred HHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHhhc-cCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3445566664 4566677889999999999999999999999999999999999 6799999999988777665542
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccchhHHHHHHHHHHHHHhh
Q psy7925 364 --SNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLV 422 (472)
Q Consensus 364 --~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~~~~il~iv~~l~li~~ 422 (472)
.+++.+.+..+...++.|.+...+.+++++|++ ..+++++.+.|+++++.
T Consensus 330 ~~~~~~~l~~~~~~~~li~y~~~~~a~~~l~~~~~---------~~~~~~~~~~~~~~~~~ 381 (410)
T PRK11021 330 LGLNLEALIAYANGIFVLIYLLCMLAACKLLKGRY---------RPLAVLGCLLCLLLLVM 381 (410)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HHHHHHHHHHHHHHHHH
Confidence 467888899999999999999999998876531 25788888888888553
No 51
>KOG2082|consensus
Probab=99.29 E-value=3.1e-11 Score=131.07 Aligned_cols=148 Identities=13% Similarity=0.014 Sum_probs=102.6
Q ss_pred HHHHHhhhchhhhhhhhhHHHHHhhhcCCCC--hhhhcccCCCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy7925 303 FVALSTFGGVNGIILTTSRLFYAGACEGQMP--EILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWLS 380 (472)
Q Consensus 303 ~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP--~~f~kv~~k~~tP~~al~~~~~i~~ii~l~~~~~~l~~l~~~~~l~~ 380 (472)
+...|++|+.+-.+.++.|++++.|||+++| +.|+|.. +++-|+++++++.+++-+.++.++.+.+..+.++.++++
T Consensus 502 GsFlST~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~-~ngEPt~aLlLT~~Ice~gILigslD~iApilsmFFLMC 580 (1075)
T KOG2082|consen 502 GSFLSTCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGK-ANGEPTWALLLTAIICECGILIGSLDLIAPILSMFFLMC 580 (1075)
T ss_pred hHHHHHhHHHHhhhcCcHHHHHHHhhcCccchhhhhcccc-CCCCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHHH
Confidence 3344444444444444444444444444544 4567766 788999999999999999999999999999999999999
Q ss_pred HHHHHhHHHhhh-hcCCCCCCCcccc-hhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHhccCcc
Q psy7925 381 IGVGVLCLPVLR-YTQPDLPRPIKVH-LIFPAAYLIASVFVTLVPMMASPVETGIGCLMIATSVPVYMVFIAWRNKPKV 457 (472)
Q Consensus 381 yil~~~a~~~l~-~~~~~~~~~~~~~-~~~~il~iv~~l~li~~~~~~~~~~~~i~~~v~~lgl~iy~~~~~~~~~~~~ 457 (472)
|.+.+++....- .|.|.++..||.. +.+..++..+|+.+.+. ..+...++...++.++|-+..++-.++.|
T Consensus 581 Y~fVNLaCavqtLLrtPnWRPRfkyyHW~LSflG~sLC~~iMF~------~SWyyAlvAm~~a~~IYKYiEykGAeKEW 653 (1075)
T KOG2082|consen 581 YLFVNLACAVQTLLRTPNWRPRFKYYHWSLSFLGASLCLAIMFI------SSWYYALVAMLIAGVIYKYIEYKGAEKEW 653 (1075)
T ss_pred HHHHhHHHHHHHHhcCCCCCccchhhhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhccccchh
Confidence 999999876633 3556665556544 47889999999888432 12234555566677778766665555544
No 52
>PRK10746 putative transport protein YifK; Provisional
Probab=99.29 E-value=1.9e-11 Score=130.58 Aligned_cols=228 Identities=14% Similarity=0.107 Sum_probs=174.7
Q ss_pred hhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHHHH
Q psy7925 212 FALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFANR 291 (472)
Q Consensus 212 ~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~~~ 291 (472)
...++|.|+|.....+||.|+|+|++||++.. ++..+.++|+....+....+|.+|+..+++|+...
T Consensus 208 ~~~faf~G~e~v~~~a~E~knP~k~iP~Ai~~-------------~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~ 274 (461)
T PRK10746 208 IVVASYQGVELIGITAGEAKNPQVTLRSAVGK-------------VLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLT 274 (461)
T ss_pred HHHHHhcCHHHHHHHHHHhcChhhHHHHHHHH-------------HHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHH
Confidence 45788999999999999999999999999887 77888899999999999999999988766665543
Q ss_pred H---hccc-hhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHh----h
Q psy7925 292 I---FGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLM----S 363 (472)
Q Consensus 292 ~---~G~~-~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l----~ 363 (472)
+ ..+. +.++.+.++++.+++.|+.+++.||.+|++||||++|++|+|+| |+++|++++++..+...+... .
T Consensus 275 ~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~~~~~~-~~g~P~~al~~~~~~~~l~~~~~~~~ 353 (461)
T PRK10746 275 FAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVS-RHGVPVAGVAVSILILLVGSCLNYII 353 (461)
T ss_pred HHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 3 2222 34577788889999999999999999999999999999999999 889999999887544333211 1
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCC--CCCCcccch--hHHHHHHHHHHHHHhhccccc--chhHHH
Q psy7925 364 ----SNIFALINYVGFATWLSIGVGVLCLPVLRYTQPD--LPRPIKVHL--IFPAAYLIASVFVTLVPMMAS--PVETGI 433 (472)
Q Consensus 364 ----~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~--~~~~~~~~~--~~~il~iv~~l~li~~~~~~~--~~~~~i 433 (472)
..++.+.++.++...+.|++...+.+++||++|+ .++|||.|. +.+.++++.++.++....... ......
T Consensus 354 ~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (461)
T PRK10746 354 PNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHKAAIASHPFRSILFPWANYLTMAFLICVLIGMYFNEDTRMSLFV 433 (461)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcCCCccHHHHHHHHHHHHHHHHHHHCccHHHHHHH
Confidence 2356678899999999999999999999988775 357888776 555555555555533322222 134455
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q psy7925 434 GCLMIATSVPVYMVFIAWRN 453 (472)
Q Consensus 434 ~~~v~~lgl~iy~~~~~~~~ 453 (472)
.+..+.+..+.|..+++++|
T Consensus 434 ~~~~~~~~~~~y~~~~~~~~ 453 (461)
T PRK10746 434 GIIFLLAVTLIYKVFGLNRH 453 (461)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 55666667777776655543
No 53
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.23 E-value=5.1e-11 Score=126.75 Aligned_cols=99 Identities=12% Similarity=0.071 Sum_probs=80.0
Q ss_pred chhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcch-H--
Q psy7925 210 NIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSE-A-- 286 (472)
Q Consensus 210 ~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~-~-- 286 (472)
....+|+|.|+|.....+||.|+|+|++||++.. +...+.++|+....+....+|.+|.+..+ +
T Consensus 187 ~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~-------------~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~ 253 (446)
T PRK10197 187 MLITMFSFMGAEIVTIAAAESDTPEKHIVRATNS-------------VIWRISIFYLCSIFVVVALIPWNMPGLKAVGSY 253 (446)
T ss_pred HHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHH-------------HHHHHHHHHHHHHHHHheecCcCcccccccCcH
Confidence 3446789999999999999999999999999888 88899999999999999999987643221 1
Q ss_pred -HHHHHHhccch-hHHHHHHHHHhhhchhhhhhhhhH
Q psy7925 287 -TFANRIFGPIA-WTLPVFVALSTFGGVNGIILTTSR 321 (472)
Q Consensus 287 -~l~~~~~G~~~-~ii~i~~l~s~~~~~~~~~~~~SR 321 (472)
...+...++.+ .++.+.++++.+++.|+++++.+|
T Consensus 254 ~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR 290 (446)
T PRK10197 254 RSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASR 290 (446)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455554 456777888999999999999988
No 54
>PRK10249 phenylalanine transporter; Provisional
Probab=99.22 E-value=1.7e-11 Score=130.70 Aligned_cols=70 Identities=11% Similarity=0.093 Sum_probs=60.6
Q ss_pred chhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHH
Q psy7925 210 NIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFA 289 (472)
Q Consensus 210 ~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~ 289 (472)
.....++|.|+|+....+||.++|+|++||++.. +.+.+.++|++...+....+|.+|+..+++|+.
T Consensus 215 ~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai~~-------------~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~ 281 (458)
T PRK10249 215 LAVIMFSFGGLELIGITAAEARDPEKSIPKAVNQ-------------VVYRILLFYIGSLVVLLALYPWVEVKSNSSPFV 281 (458)
T ss_pred HHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHHHH-------------HHHHHHHHHHHHHHHHheeccccccCccCCcHH
Confidence 3556889999999999999999999999999988 889999999999999999999988876666665
Q ss_pred HHH
Q psy7925 290 NRI 292 (472)
Q Consensus 290 ~~~ 292 (472)
..+
T Consensus 282 ~~~ 284 (458)
T PRK10249 282 MIF 284 (458)
T ss_pred HHH
Confidence 544
No 55
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.21 E-value=9.3e-11 Score=125.30 Aligned_cols=234 Identities=15% Similarity=0.161 Sum_probs=175.9
Q ss_pred cchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhh--hhcc--
Q psy7925 209 SNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAE--VLNS-- 284 (472)
Q Consensus 209 ~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~--l~~~-- 284 (472)
+....+|+|.|+|.....+||.|+|+|++||++.. +.+.+.++|....++....+|.+| +.++
T Consensus 202 ~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~-------------~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~ 268 (478)
T TIGR00913 202 VFVTAAFSFGGTELVALTAGEAANPRKSIPRAAKR-------------TFWRILVFYILTLFLIGFLVPYNDPRLLSSSS 268 (478)
T ss_pred HHHHHHhhhccHHHHHHHHHhhcChhhHHHHHHHH-------------HHHHHHHHHHHHHHHheeeccCCChhhccccc
Confidence 34456789999999999999999999999999998 889999999999888888888665 3332
Q ss_pred -----hHHHH---HHHhccc-hhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHH
Q psy7925 285 -----EATFA---NRIFGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAF 355 (472)
Q Consensus 285 -----~~~l~---~~~~G~~-~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~ 355 (472)
++|+. +...+++ +.++.+.++++.+++.++++++.||++|+++|||.+|++|+|+| |+++|+++++++.+
T Consensus 269 ~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~f~k~~-~~~~P~~Ai~~~~~ 347 (478)
T TIGR00913 269 SSDSAASPFVIAIQNHGIKVLPHIFNAVILISVLSAANSSLYASSRTLYALAHQGLAPKIFAYVD-RRGVPYVAVIVSSL 347 (478)
T ss_pred CCCcCCCcHHHHHHHcCCchHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCCcccHHHHhhC-CCCCCHHHHHHHHH
Confidence 13433 2222233 34677788899999999999999999999999999999999999 78999999999988
Q ss_pred HHHHHHhh------hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-----CCCCCCCcccch--hHHHHHHHHHHHHHhh
Q psy7925 356 LSLLYLMS------SNIFALINYVGFATWLSIGVGVLCLPVLRYT-----QPDLPRPIKVHL--IFPAAYLIASVFVTLV 422 (472)
Q Consensus 356 i~~ii~l~------~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~-----~~~~~~~~~~~~--~~~il~iv~~l~li~~ 422 (472)
++++..+. ..++.+.++.+....+.|++..++.+++|++ +++.+||||.|. +.+.++++.++++++.
T Consensus 348 ~~~l~~l~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~i~~r~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 427 (478)
T TIGR00913 348 FGLLAFLAVSKKEAEVFTWLLNISGLSGFFTWMCICLSHIRFRKAMKAQGRSLDELPYKSQTGPYGSYYALFFNILILIA 427 (478)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCccCCCcchHHHHHHHHHHHHHHH
Confidence 87655442 2467788999999999999999999998875 234468899887 6666666666555443
Q ss_pred ccc-------ccchhHHHHHHHHHHHHHHHHHHHHHhccCc
Q psy7925 423 PMM-------ASPVETGIGCLMIATSVPVYMVFIAWRNKPK 456 (472)
Q Consensus 423 ~~~-------~~~~~~~i~~~v~~lgl~iy~~~~~~~~~~~ 456 (472)
..+ .+............+.+.+|..++.++|+++
T Consensus 428 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (478)
T TIGR00913 428 QGYVAFAPVKFSAKSFFEAYLSLPIFIALYIGHKVYKRDKL 468 (478)
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 222 1222333445555666666776666554443
No 56
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.20 E-value=4.1e-11 Score=127.81 Aligned_cols=196 Identities=15% Similarity=0.175 Sum_probs=158.6
Q ss_pred hhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHHHHH
Q psy7925 213 ALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFANRI 292 (472)
Q Consensus 213 ~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~~~~ 292 (472)
..|+|.|+|.....+||.|+|+|++||++.. +...+.++|+.........+|.+|+.++++|+...+
T Consensus 209 ~~~af~G~e~~~~~aeE~knP~r~iPrAi~~-------------~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~ 275 (456)
T PRK10238 209 IMFSFGGLELVGITAAEADNPEQSIPKATNQ-------------VIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIF 275 (456)
T ss_pred HHHHhcCHHHHHHHHHhhcChhhHHHHHHHH-------------HHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHH
Confidence 6799999999999999999999999999876 677788889888888888889999877666665543
Q ss_pred --hcc-c-hhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHhh-----
Q psy7925 293 --FGP-I-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMS----- 363 (472)
Q Consensus 293 --~G~-~-~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l~----- 363 (472)
.|. + ..++.+.++++.+++.++.+++.||.+|+++|||.+|++|+|+| |+++|+++++++.+++.+..+.
T Consensus 276 ~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP~~f~kv~-~~~~P~~Ail~~~~i~~l~~l~~~~~~ 354 (456)
T PRK10238 276 HELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVD-KRGVPVNTILVSALVTALCVLINYLAP 354 (456)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcCh
Confidence 222 2 23466778889999999999999999999999999999999999 6799999999998888776553
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCC--CCCcccch--hHHHHHHHHHHHHHhh
Q psy7925 364 -SNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDL--PRPIKVHL--IFPAAYLIASVFVTLV 422 (472)
Q Consensus 364 -~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~--~~~~~~~~--~~~il~iv~~l~li~~ 422 (472)
..++.+.++.+...++.|.+...+.+++||++++. +++++.|+ +.+.++++.+.+.++.
T Consensus 355 ~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 418 (456)
T PRK10238 355 ESAFGLLMALVVSALVINWAMISLAHMKFRRAKQEQGVVTRFPALLYPLGNWICLLFMAAVLVI 418 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCCccHHHHHHHHHHHHHHHH
Confidence 35778889999999999999999999999876542 34556544 5666666655554433
No 57
>KOG1288|consensus
Probab=99.15 E-value=9.2e-10 Score=119.06 Aligned_cols=204 Identities=17% Similarity=0.103 Sum_probs=143.3
Q ss_pred hhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHHHh
Q psy7925 30 VTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFANRI 109 (472)
Q Consensus 30 ~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (472)
...|...+...+=+-.|.-.-+++++|.|+|.|.|||+.+.++....+.|+++.+......|+..+.++-..+...
T Consensus 293 ~~~F~~~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~v~~~i---- 368 (945)
T KOG1288|consen 293 YEDFASTFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYDVMMHI---- 368 (945)
T ss_pred ceehhhhheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchhheeec----
Confidence 3455555555555666777789999999999999999999999999999999999999999987776654433221
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhHhhhccC
Q psy7925 110 FGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQVTKM 189 (472)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (472)
....+.+.+.+....+.+-++.+.+.||++.++|||.++|..+
T Consensus 369 -sl~p~fi~iGi~sttlfss~s~liGasrvL~alakD~lfg~ll------------------------------------ 411 (945)
T KOG1288|consen 369 -SLHPPFILIGILSTTLFSSMSGLIGASRVLEALAKDDLFGGLL------------------------------------ 411 (945)
T ss_pred -cccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhh------------------------------------
Confidence 1112333333333444444444555555555555555554222
Q ss_pred CCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHH
Q psy7925 190 TPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTN 269 (472)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~ 269 (472)
T Consensus 412 -------------------------------------------------------------------------------- 411 (945)
T KOG1288|consen 412 -------------------------------------------------------------------------------- 411 (945)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhH
Q psy7925 270 VAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPA 349 (472)
Q Consensus 270 ~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~a 349 (472)
.|.|.....+.|+.+
T Consensus 412 -----------------------------------------------------------------~fak~~s~~~nP~~a 426 (945)
T KOG1288|consen 412 -----------------------------------------------------------------FFAKGSSYDGNPYVA 426 (945)
T ss_pred -----------------------------------------------------------------eeeeccccCCCceee
Confidence 345555578899999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcC-CCCCCCcccch-hHHHHHHHHHHHH
Q psy7925 350 VLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLCLPVLRYTQ-PDLPRPIKVHL-IFPAAYLIASVFV 419 (472)
Q Consensus 350 l~~~~~i~~ii~l~~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~-~~~~~~~~~~~-~~~il~iv~~l~l 419 (472)
+.++.++.-+..+.++++.+.++.++.++++|..++++.+.+.... |..+..||..- --++++.+.++.+
T Consensus 427 v~vtw~lvqlvll~g~~N~iA~~it~~FLlty~~vNLacl~LeissAPNFRPtFkyF~w~TclvG~l~s~~m 498 (945)
T KOG1288|consen 427 VGVTWLLVQLVLLWGDINKIASMITMTFLLTYGAVNLACLLLEISSAPNFRPTFKYFNWHTCLVGVLLSLGM 498 (945)
T ss_pred eeHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhhHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999988877654 44444454432 3455555555554
No 58
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.15 E-value=5.9e-10 Score=116.79 Aligned_cols=85 Identities=24% Similarity=0.372 Sum_probs=66.5
Q ss_pred hhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchH----
Q psy7925 211 IFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEA---- 286 (472)
Q Consensus 211 ~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~---- 286 (472)
...+++|.|+|+....+||.|+ |++||++.. +.+.+.++|.+.+++....+|.+|..+.++
T Consensus 195 ~~~~~~~~G~e~~~~~~~E~k~--k~ip~ai~~-------------~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~ 259 (426)
T PF13520_consen 195 SVAFFAFSGFEAIASLAEENKN--KTIPRAIII-------------SIIIVAIIYILFSIALLGALPDDELANSSNSPSP 259 (426)
T ss_dssp HHHGGGGTTTTHHHHGGGGSSS--HHHHHHHHH-------------HHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCH
T ss_pred HHHHhhcccccccccccccccc--hhheeeccc-------------chhHHHHHHhhhhheeeecccchhhhcccccccc
Confidence 3468999999999999999554 899999998 899999999999999999999999876432
Q ss_pred --HHHHHHhccch-hHHHHHHHHHhhh
Q psy7925 287 --TFANRIFGPIA-WTLPVFVALSTFG 310 (472)
Q Consensus 287 --~l~~~~~G~~~-~ii~i~~l~s~~~ 310 (472)
...+...+++. +++.+.++++.++
T Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~~~~ 286 (426)
T PF13520_consen 260 FAVLASAVGGSWLAIIVSIAAILSLFG 286 (426)
T ss_dssp HHHHHHHHHCCTHHHHHHHHHHHHHHH
T ss_pred cchhhcccccccccccccccccccccc
Confidence 44555555553 4455556666655
No 59
>PRK10836 lysine transporter; Provisional
Probab=99.14 E-value=1.1e-10 Score=125.53 Aligned_cols=219 Identities=16% Similarity=0.179 Sum_probs=171.4
Q ss_pred hhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhh---cc-----h
Q psy7925 214 LINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVL---NS-----E 285 (472)
Q Consensus 214 l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~---~~-----~ 285 (472)
.|+|.|+|.....+||.|+|+|++||++.. +.+.+.++|++.+.+....+|.+|.+ ++ .
T Consensus 215 ~faf~G~e~~~~~a~E~knP~r~iPrAi~~-------------~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~ 281 (489)
T PRK10836 215 GFSFQGTELIGIAAGESEDPAKNIPRAVRQ-------------VFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISV 281 (489)
T ss_pred HHHHccHHHHHHHHHHhcCHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHheecCCCChhhhccccccccC
Confidence 589999999999999999999999999988 88999999999999999999976532 11 2
Q ss_pred HHHHHHH---hccc-hhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHH
Q psy7925 286 ATFANRI---FGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYL 361 (472)
Q Consensus 286 ~~l~~~~---~G~~-~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~ 361 (472)
+|+...+ ..+. +.++.+.++++.+++.|+.+++.||++|+|||||.+|++|+|+| |+++|+++++++.+++++..
T Consensus 282 sp~~~~~~~~g~~~~~~ii~~~il~a~~~~~n~~~~~~sR~l~a~Ardg~lP~~~~kv~-~~~~P~~All~~~~~~~l~~ 360 (489)
T PRK10836 282 SPFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPRIFAKLS-RGGVPRNALYATTVIAGLCF 360 (489)
T ss_pred CcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHH
Confidence 3433332 1122 34567778889999999999999999999999999999999999 67999999999998888776
Q ss_pred hhh------hHHHHHHHHHHHHHHHHHHHHhHHHhhhhc----CCCCC-CCcccch--hHHHHHHHHHHHHHhhccccc-
Q psy7925 362 MSS------NIFALINYVGFATWLSIGVGVLCLPVLRYT----QPDLP-RPIKVHL--IFPAAYLIASVFVTLVPMMAS- 427 (472)
Q Consensus 362 l~~------~~~~l~~l~~~~~l~~yil~~~a~~~l~~~----~~~~~-~~~~~~~--~~~il~iv~~l~li~~~~~~~- 427 (472)
+.. .++.+.++.++...+.|++..++.+++||+ +|+.+ ||||.|. +.+.++++.|+++++...+..
T Consensus 361 l~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~l~~R~~~~~~~~~~~~~p~~~p~~p~~~~~~~~~~~~~~~~~~~~~~ 440 (489)
T PRK10836 361 LTSMFGNQTVYLWLLNTSGMTGFIAWLGIAISHYRFRRGYVLQGHDLNDLPYRSGFFPLGPIFAFVLCLIITLGQNYEAF 440 (489)
T ss_pred HHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCccHHHHHHHHHHHHHHHHHHHHhh
Confidence 532 245677888889999999999999998885 45654 7999998 788888888888766533322
Q ss_pred --chhHHHHHHHHHHHHHHHH
Q psy7925 428 --PVETGIGCLMIATSVPVYM 446 (472)
Q Consensus 428 --~~~~~i~~~v~~lgl~iy~ 446 (472)
+...+..+...++|+++|.
T Consensus 441 ~~~~~~~~~~~~~~~g~~~~~ 461 (489)
T PRK10836 441 LKDTIDWGGVAATYIGIPLFL 461 (489)
T ss_pred cCCCccHHHHHHHHHHHHHHH
Confidence 1113444455555555554
No 60
>KOG1286|consensus
Probab=99.14 E-value=1.7e-10 Score=125.70 Aligned_cols=170 Identities=16% Similarity=0.220 Sum_probs=149.9
Q ss_pred hhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhh--hhcch---
Q psy7925 211 IFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAE--VLNSE--- 285 (472)
Q Consensus 211 ~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~--l~~~~--- 285 (472)
+....+|.|+|.....+||.++|||+||+++.. ++..+..+|..++...-..+|.+| +.+++
T Consensus 239 ~~~~fsf~G~e~va~~a~E~kNP~k~IP~ai~~-------------s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~ 305 (554)
T KOG1286|consen 239 ATAFFSFIGFELVATTAEEAKNPRKAIPKAIKQ-------------SLLRILLFYILSSIVLGLLVPYNDPRLDPGAALA 305 (554)
T ss_pred HHHHHHHhhHHHHHHHHHhccCCcccccHHHHH-------------HHHHHHHHHHHHHHHheEEeccCccccCCCCccc
Confidence 345678899999999999999999999999988 999999999999999999999988 66554
Q ss_pred HHHH-HHHhccchh---HHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHH
Q psy7925 286 ATFA-NRIFGPIAW---TLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYL 361 (472)
Q Consensus 286 ~~l~-~~~~G~~~~---ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~ 361 (472)
+++. ..-...... ++.++++++..++.|+.++.++|.+|+|||||++||+|+++|+| |+|+.+++...+.+.+..
T Consensus 306 spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~ 384 (554)
T KOG1286|consen 306 SPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAA 384 (554)
T ss_pred cHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHH
Confidence 2444 222333334 78999999999999999999999999999999999999999977 999999999999999988
Q ss_pred hhhh------HHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q psy7925 362 MSSN------IFALINYVGFATWLSIGVGVLCLPVLRYT 394 (472)
Q Consensus 362 l~~~------~~~l~~l~~~~~l~~yil~~~a~~~l~~~ 394 (472)
+..+ ++++.++.+++.++.|.+...+.+++|+.
T Consensus 385 ~~~~~~~~~~f~~L~~~~si~tl~~w~~i~~~~i~~R~a 423 (554)
T KOG1286|consen 385 LNFSLGAATVFNWLVNLSSIGTLFAWTLVALSHLRFRYA 423 (554)
T ss_pred HHhccccchHHHHHHHHHhHHHHHHHHHHHHHHeeeeec
Confidence 8543 59999999999999999999999999875
No 61
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.10 E-value=1.6e-08 Score=105.67 Aligned_cols=103 Identities=16% Similarity=0.310 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHhhc-------chhhhhhhhh-hhcCcccchhhHHHHHH-HHHHHHHHHHHHHHHhccChhhhh---cc
Q psy7925 31 TSIALSFYSGLFAYN-------GWNYLNFIIE-ELKDPIVNLPRAIYISC-TLVTVVYVLTNVAFYTTLSPAEVL---NS 98 (472)
Q Consensus 31 ~~~~~~~~~~~~a~~-------G~~~~~~~~~-E~k~p~~~~p~a~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~---~~ 98 (472)
..+..|+.-+.+.++ ||-.++.+.+ |.|||+|+.|+.+..++ ..+...|+..+.++....+.++.. ++
T Consensus 174 ~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~ 253 (378)
T TIGR00796 174 QAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNG 253 (378)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCc
Confidence 468899999999999 9999999988 99999999999999998 778888999999999988766443 35
Q ss_pred hhHHHHHHHHhccchh-hHHHHHHHHHHHHHHHHHH
Q psy7925 99 EAVAVTFANRIFGPIA-WTLPVFVALSTFGGVNGII 133 (472)
Q Consensus 99 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 133 (472)
+.......++.+|+.+ ..+.+.+.++++++.++.+
T Consensus 254 ~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli 289 (378)
T TIGR00796 254 AQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLT 289 (378)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888999999975 5566677777777766643
No 62
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=98.97 E-value=5.2e-08 Score=101.16 Aligned_cols=109 Identities=17% Similarity=0.221 Sum_probs=78.3
Q ss_pred CChhHHHHHHHHHHHhhcchh-hhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcch------h
Q psy7925 28 TDVTSIALSFYSGLFAYNGWN-YLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSE------A 100 (472)
Q Consensus 28 ~~~~~~~~~~~~~~~a~~G~~-~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~------~ 100 (472)
.++.++..++...+++| |+| .+..+.+|.||++|++||++..+..+++++|++.+......+|++++.+.. .
T Consensus 175 ~~~~~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~ 253 (381)
T TIGR00837 175 SYWPYILSALPVCLTSF-GFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLD 253 (381)
T ss_pred ccHHHHHHHHHHHHHHH-HcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChH
Confidence 35677888888888888 665 688889999877999999999999999999999999999999999886321 2
Q ss_pred HHHHHHHHhccc--hhhHHHHHHHHHHHHHHHHHHHHHH
Q psy7925 101 VAVTFANRIFGP--IAWTLPVFVALSTFGGVNGIILTTS 137 (472)
Q Consensus 101 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s 137 (472)
+.....++..+. ....+.++..+++.++.++..++.+
T Consensus 254 ~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~ 292 (381)
T TIGR00837 254 GLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLF 292 (381)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233333332 2345555556666666666555543
No 63
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=98.62 E-value=2e-06 Score=91.14 Aligned_cols=130 Identities=17% Similarity=0.092 Sum_probs=80.0
Q ss_pred HHHHHHHhhcchhhhhhhhhhh-cCcccchhhHHHHHHHHHHHHHHHHHHH--HHhcc-ChhhhhcchhHHHHHHHHhcc
Q psy7925 36 SFYSGLFAYNGWNYLNFIIEEL-KDPIVNLPRAIYISCTLVTVVYVLTNVA--FYTTL-SPAEVLNSEAVAVTFANRIFG 111 (472)
Q Consensus 36 ~~~~~~~a~~G~~~~~~~~~E~-k~p~~~~p~a~~~~~~~~~~~y~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~ 111 (472)
.....+.-+.+.-..+.=.++- ||-.|.+-.++....++....-+ .... -...+ ..++ .-......... ..+
T Consensus 199 ~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~~~~~~~~~~~~~-~~~g~~~~~~l~~~~~--p~~~~~~~~~g-~~~ 274 (442)
T TIGR00908 199 FAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAILTLLALAAGILV-VGPGAADAKELMGSNN--PLPEALESIYG-GST 274 (442)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHH-HHhcCCCHHHhCCCcc--hHHHHHHHHhC-Cch
Confidence 3455555565555555445554 77777888887765443332222 2211 11111 1111 11111111111 122
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHh
Q psy7925 112 PIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTI 170 (472)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~ 170 (472)
.....+.+..+++.+++.|+.++..||.+|++||||++|++|+|+| +++||++|+++.
T Consensus 275 ~~~~~i~~~~~~~~~~s~~~~~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~Ail~~ 332 (442)
T TIGR00908 275 WMSQFVNLVGLFGLIASFHGIIYGYSRQIFALSRAGYLPESLSKVN-RKKAPVLAIVVP 332 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHhC-CCCCcHHHHHHH
Confidence 3344556677888999999999999999999999999999999999 899999888753
No 64
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.61 E-value=3.9e-07 Score=97.74 Aligned_cols=54 Identities=11% Similarity=-0.031 Sum_probs=42.4
Q ss_pred hhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccC
Q psy7925 211 IFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLS 277 (472)
Q Consensus 211 ~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp 277 (472)
+...|+|.|+|..+..+||.|+|+|++||++.. +++++.+.|.......+...|
T Consensus 220 ~~~~~~f~G~e~~~~~aeE~knP~r~iPrai~~-------------s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 220 LMAAYVMVGFGSAGELSEETKNPRRVAPRTILT-------------ALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred HHHHHHhcCcchHHHHHHHhcCcchhhhHHHHH-------------HHHHHHHHHHHHHHHHHHHCC
Confidence 345689999999999999999999999999988 666666666665555555444
No 65
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=98.54 E-value=1.4e-07 Score=99.47 Aligned_cols=180 Identities=17% Similarity=0.196 Sum_probs=151.6
Q ss_pred hhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHHHHH
Q psy7925 213 ALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFANRI 292 (472)
Q Consensus 213 ~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~~~~ 292 (472)
...+|.|.|-....+.|+++|+|++||++-- -..=..++|+..-...+...|-+|+..+.+|+.+.+
T Consensus 212 v~Faf~GiElvGitA~Et~dP~k~ipkAin~-------------V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f 278 (462)
T COG1113 212 VMFAFGGIELVGITAAEAKDPEKAIPKAINS-------------VIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVF 278 (462)
T ss_pred HHHHHhhHHHHHHHHHhhcChhhHHHHHHhh-------------hhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHH
Confidence 4567888999999999999999999999766 556677889999889999999999999998887777
Q ss_pred h--c-cc-hhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHhh-----
Q psy7925 293 F--G-PI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMS----- 363 (472)
Q Consensus 293 ~--G-~~-~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l~----- 363 (472)
- | +. +-++.+.++.+.+++.|+-+|+.+|++|++++||..||.++|++ |++.|.+++.++.+...+..+.
T Consensus 279 ~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~APk~~~kls-k~gVP~~ai~~s~~~~~~~V~Lny~~P 357 (462)
T COG1113 279 SLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPKAFAKLS-KRGVPVNAILLSAVVLLLGVVLNYILP 357 (462)
T ss_pred HHcCCcccccceeEEEeechhhcccccccccchHHHHHhhcCcccHhHhhcc-ccCCCHHHHHHHHHHHHHHHHHHhhcc
Confidence 2 2 22 34678889999999999999999999999999999999999999 8999999999887777666653
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCC--CCCcccch
Q psy7925 364 -SNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDL--PRPIKVHL 406 (472)
Q Consensus 364 -~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~--~~~~~~~~ 406 (472)
..++.+.+..+...+..|.+..++..++||++++. +.+||.|.
T Consensus 358 ~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk~~~~~~~~~~fkm~~ 403 (462)
T COG1113 358 EKVFELVTSSSGLGLLFVWLMILLSQLKLRKAKPAEGKKLKFKMPL 403 (462)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccCccccccc
Confidence 35667779999999999999999999999865543 34577775
No 66
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=98.52 E-value=9.1e-08 Score=102.66 Aligned_cols=112 Identities=17% Similarity=0.212 Sum_probs=90.6
Q ss_pred chhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhh--hhc----
Q psy7925 210 NIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAE--VLN---- 283 (472)
Q Consensus 210 ~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~--l~~---- 283 (472)
++-+-.+|.|-|.....+-|+++|+|++|+++-= .+.=+.++|++.....-..+|.+| |.+
T Consensus 240 ~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik~-------------vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~ 306 (541)
T COG0833 240 FVIAAFSFSGTELVGLAAGESENPRKSIPKAIKQ-------------VFWRILLFYILSIFVIGLLVPYNDPRLLGNSSS 306 (541)
T ss_pred HhhheeeeeceeeeeeeecccCCchhhhHHHHHH-------------HHHHHHHHHHHHHHHheEEccCCCcccccCCcC
Confidence 3445567888999999999999999999999877 677888999999999989999976 321
Q ss_pred --chHHHHHHH--hccc--hhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCCh
Q psy7925 284 --SEATFANRI--FGPI--AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPE 334 (472)
Q Consensus 284 --~~~~l~~~~--~G~~--~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~ 334 (472)
.++|+.-.+ .|.- +-++..+++++.+++.|+.+|.+||.+|+||+||+.||
T Consensus 307 ~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA~~g~APk 363 (541)
T COG0833 307 GVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLAKQGKAPK 363 (541)
T ss_pred CccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCCCch
Confidence 223444333 2322 35789999999999999999999999999999999996
No 67
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.45 E-value=1.6e-05 Score=86.36 Aligned_cols=140 Identities=19% Similarity=0.239 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHH---HHH
Q psy7925 32 SIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTF---ANR 108 (472)
Q Consensus 32 ~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 108 (472)
+.+..+...+|+|.|+|.+++++||+|||+||+|||+..+.+++.++|.+.+++....+|++|+..++.+...+ .+.
T Consensus 195 ~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~ 274 (507)
T TIGR00910 195 GTLVVFVAFIGAYMGVEASASHINELENPGRDYPLAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILH 274 (507)
T ss_pred cHHHHHHHHHHHHhcHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHh
Confidence 34456667799999999999999999999999999999999999999999888887788888876555443332 222
Q ss_pred hcc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhh
Q psy7925 109 IFG---PIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVT 172 (472)
Q Consensus 109 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~ 172 (472)
..+ +....+.+.++++.++++++.++..||.+++++|||++|+.|+|+| +++||++++++...
T Consensus 275 ~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~sR~l~~~ardg~lP~~~~k~n-k~~~P~~a~~~~~~ 340 (507)
T TIGR00910 275 FAHEIEWLVKVIAALIAFGVLAEIASWIVGPSRGMFAAAQKGLLPAAFAKMN-KHEVPVPLVIIQGI 340 (507)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcCHHHHhhC-cCCCcHHHHHHHHH
Confidence 222 2234567778899999999999999999999999999999999998 67999888775444
No 68
>TIGR00909 2A0306 amino acid transporter.
Probab=98.44 E-value=6.4e-06 Score=86.76 Aligned_cols=143 Identities=16% Similarity=0.164 Sum_probs=85.7
Q ss_pred CCCCChhHHHHHHHHHHHhhcchhhhhhhhhh-hcCcccchhhHHHHHHHHHHHHHHHHHHHH-Hhcc-ChhhhhcchhH
Q psy7925 25 NSTTDVTSIALSFYSGLFAYNGWNYLNFIIEE-LKDPIVNLPRAIYISCTLVTVVYVLTNVAF-YTTL-SPAEVLNSEAV 101 (472)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~a~~G~~~~~~~~~E-~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~-~~~~-~~~~~~~~~~~ 101 (472)
....++..-.......+.-+...-..+.-.++ -||..|.+..++....+.-........... ...+ ..++.. ...
T Consensus 192 ~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~--~~~ 269 (429)
T TIGR00909 192 MGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPL--SLV 269 (429)
T ss_pred CcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHH--HHH
Confidence 33444333222333444444444344444444 588788999988776555443333222211 1111 111111 111
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhh
Q psy7925 102 AVTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVT 172 (472)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~ 172 (472)
......+..+.. +.+.++++.+++.++.++..||.+++++|||++|++|+|+||+++||++++++...
T Consensus 270 ~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~ 337 (429)
T TIGR00909 270 GYDLGQGIGGLI---LTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFSL 337 (429)
T ss_pred HHHhCchHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCCCCCcHHHHHHHHH
Confidence 111222323333 34567889999999999999999999999999999999999999999988775433
No 69
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=98.42 E-value=1.1e-05 Score=87.20 Aligned_cols=48 Identities=48% Similarity=0.968 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHH
Q psy7925 122 ALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLT 169 (472)
Q Consensus 122 ~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~ 169 (472)
+++.+++.|+.++..||+++++||||.+|+.|+++|++++||++++++
T Consensus 326 ~is~~~~~~~~~~~~sR~l~a~ardg~lP~~~~~v~~~~~~P~~all~ 373 (501)
T TIGR00911 326 GLSCFGSVNGSLFSSSRLFFVGGREGHLPSLLSMIHVKRLTPLPSLLI 373 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHhcCCCCCCHHHHHH
Confidence 457899999999999999999999999999999999999999887764
No 70
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=98.40 E-value=1.8e-06 Score=91.73 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhh
Q psy7925 120 FVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVT 172 (472)
Q Consensus 120 ~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~ 172 (472)
.+.++.+++.|+.++..||++|+++|||++|++|+|+||+++||++++++...
T Consensus 287 ~~~~~~~~~~~~~~~~~sR~~~a~ardg~lp~~~~~v~~~~~tP~~a~l~~~~ 339 (445)
T PRK11357 287 TAMIVILGSLSSCVMYQPRLEYAMAKDNLFFKCFGHVHPKYNTPDVSIILQGA 339 (445)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhcCCchHHHHHhCCCCCCCHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999988775433
No 71
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.20 E-value=1.7e-05 Score=85.15 Aligned_cols=142 Identities=18% Similarity=0.269 Sum_probs=111.6
Q ss_pred hHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhcc-Chhhhhcch--hHHHHHHH
Q psy7925 31 TSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTL-SPAEVLNSE--AVAVTFAN 107 (472)
Q Consensus 31 ~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~ 107 (472)
.++..++..+.|+|.|+|.+++++||+|||+||+|||+..++.++.++|++......... +.+++.+++ .+......
T Consensus 217 ~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~ 296 (482)
T TIGR00907 217 FAFLLGLLNPAWSMTGYDGTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFY 296 (482)
T ss_pred hhhhhhhhhhHHHhcCcchhhHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHH
Confidence 367778888999999999999999999999999999999998887766554444443333 445554432 24444444
Q ss_pred Hhccc-h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--hhhhhccCCCCCchhHHHHhhh
Q psy7925 108 RIFGP-I-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMP--EILTMIQVTKMTPTPAVLTIVT 172 (472)
Q Consensus 108 ~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p--~~~~~~~~~~~tP~~~~~~~~~ 172 (472)
+.+|. . ...+.+.++++.+++.++.++..||.++++||||.+| ++|+|+||+++||++++++...
T Consensus 297 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~ 365 (482)
T TIGR00907 297 NALGNKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAV 365 (482)
T ss_pred HHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHH
Confidence 44454 3 3456778889999999999999999999999999999 9999999999999988875443
No 72
>TIGR00930 2a30 K-Cl cotransporter.
Probab=98.10 E-value=0.00035 Score=81.38 Aligned_cols=140 Identities=17% Similarity=0.131 Sum_probs=112.8
Q ss_pred hHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHH--------
Q psy7925 31 TSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVA-------- 102 (472)
Q Consensus 31 ~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~-------- 102 (472)
.++...+...+++|.|+|..++++||+|||+|++|||++.++.+++++|++.++++....+.+.....+...
T Consensus 280 ~~f~~~~ai~F~A~tGi~agan~sgElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~ 359 (953)
T TIGR00930 280 GGFFSLFGIFFPSVTGILAGANISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAA 359 (953)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccch
Confidence 347767777788999999999999999999999999999999999999999998777777654432211100
Q ss_pred ---------------H--HHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--hhhhhccCCCCCc
Q psy7925 103 ---------------V--TFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMP--EILTMIQVTKMTP 163 (472)
Q Consensus 103 ---------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p--~~~~~~~~~~~tP 163 (472)
. ...... ...+.++.+.++++++++.++.++..||+++++||||++| ++|+++|++++||
T Consensus 360 ~f~~~~~~p~~~gL~~~~~~~~~~-~~~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP 438 (953)
T TIGR00930 360 CFSECAHNTCSYGLMNNLQVMSLV-SPFPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEP 438 (953)
T ss_pred hhhhhcccchhhhhcchHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCc
Confidence 0 011111 2235678888999999999999999999999999999999 8999999999999
Q ss_pred hhHHHHhh
Q psy7925 164 TPAVLTIV 171 (472)
Q Consensus 164 ~~~~~~~~ 171 (472)
++|+++..
T Consensus 439 ~~Alllt~ 446 (953)
T TIGR00930 439 LRAYLLTA 446 (953)
T ss_pred HHHHHHHH
Confidence 98877533
No 73
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=97.95 E-value=0.0002 Score=75.50 Aligned_cols=144 Identities=17% Similarity=0.194 Sum_probs=89.1
Q ss_pred CCCCChhHHHHHHHHHHHhhcchhhhhhhhhh-hcCcccchhhHHHHHHHHHHHHHHHHHHHHHhc--cCh-hhhhcchh
Q psy7925 25 NSTTDVTSIALSFYSGLFAYNGWNYLNFIIEE-LKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTT--LSP-AEVLNSEA 100 (472)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~a~~G~~~~~~~~~E-~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~--~~~-~~~~~~~~ 100 (472)
+...............+.-|.+.-..+.=.++ -||-.|.+..++.... .+.+.+.......... ... +...+...
T Consensus 198 ~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~~~~~~-~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~ 276 (466)
T COG0531 198 GSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVL-ILYILGALVIVGVLPAGDLAASAPSAPLAL 276 (466)
T ss_pred chHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHHHHHHHH-HHHHHHHHHHHhCccHHHHhccCCCccHHH
Confidence 45556555555666667777766666655555 5775577787774443 3333333333322221 110 00011111
Q ss_pred HHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhh
Q psy7925 101 VAVTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVT 172 (472)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~ 172 (472)
.......+.... .+.+...++.+++.++..+..+|.+++++|||.+|+.++|+|++.+||+++.+....
T Consensus 277 ~~~~~~g~~~~~---~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~~~~~~~~~~~~P~~a~~~~~i 345 (466)
T COG0531 277 AALFGGGNWGAI---IIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGI 345 (466)
T ss_pred HHHHcCccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHhCCCCCCCHHHHHHHHH
Confidence 111111122222 345567889999999999999999999999999999999999999999988885444
No 74
>KOG2083|consensus
Probab=97.83 E-value=3.3e-05 Score=83.66 Aligned_cols=139 Identities=6% Similarity=0.019 Sum_probs=105.8
Q ss_pred HHHHHHhhhchhhhhhhhhHHHHHhhhcCCCCh--hhhcccCCCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy7925 302 VFVALSTFGGVNGIILTTSRLFYAGACEGQMPE--ILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWL 379 (472)
Q Consensus 302 i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~--~f~kv~~k~~tP~~al~~~~~i~~ii~l~~~~~~l~~l~~~~~l~ 379 (472)
.+...+..++..+.+.++.++++++.+|...|. ++.|-.+|.+-|.++..++...+...+..+..+.+..+.+...+.
T Consensus 321 AGi~~a~LSsalsslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis~FfL~ 400 (643)
T KOG2083|consen 321 AGILAAELSSALSSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIISNFFLL 400 (643)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchhhhhhh
Confidence 455666777778888899999999999999995 678888899999999999999999999888889999999999999
Q ss_pred HHHHHHhHHHhhhhcCCC-CCCCcccch-hHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHH
Q psy7925 380 SIGVGVLCLPVLRYTQPD-LPRPIKVHL-IFPAAYLIASVFVTLVPMMASPVETGIGCLMIATSVPVYM 446 (472)
Q Consensus 380 ~yil~~~a~~~l~~~~~~-~~~~~~~~~-~~~il~iv~~l~li~~~~~~~~~~~~i~~~v~~lgl~iy~ 446 (472)
.|.+.+.+.+..+...++ ++++++... |..+.+.+.|+.+.+ ...+|..++-......+|.
T Consensus 401 syAlinf~~f~aSl~~s~~wRp~f~~yn~wVSllGalKOG~ImF------li~w~aaLi~~~~~~~Ly~ 463 (643)
T KOG2083|consen 401 SYALINFSCFHASLAISEGWRPSFKFYNAWVSLLGALLCLAIMF------LISWWAALITFSVLSALYL 463 (643)
T ss_pred hhhccchhhhhhhhccccccCchhhhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHh
Confidence 999998888876655443 444555554 888888888877632 2344555554434444444
No 75
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=97.64 E-value=0.0017 Score=70.32 Aligned_cols=140 Identities=16% Similarity=0.261 Sum_probs=112.5
Q ss_pred hHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchh------HHH-
Q psy7925 31 TSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEA------VAV- 103 (472)
Q Consensus 31 ~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~------~~~- 103 (472)
.+++.++..+.|+|.|+|.+++++||+|||+||+|||+..+..++.++|++..+......|+++...++. +..
T Consensus 211 ~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (496)
T PRK15238 211 IAVLSFVVFAIFAYGGIEAVGGLVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYVL 290 (496)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHHH
Confidence 4677788899999999999999999999999999999999999999999999888777777777654321 100
Q ss_pred --HHH-------------HHhccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHH
Q psy7925 104 --TFA-------------NRIFGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAV 167 (472)
Q Consensus 104 --~~~-------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~ 167 (472)
... ...++.+ ...+++..+++.+++.++.++..+|.++++++||++|++|+|+| +++||++++
T Consensus 291 ~~~~g~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~n-k~g~P~~a~ 369 (496)
T PRK15238 291 MNNLGYTLGHALGLSPAASLTLGVWFARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLN-KNGMPANAM 369 (496)
T ss_pred HHHHHHHHHHHhccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhC-cCCCcHHHH
Confidence 000 0111222 23556778999999999999999999999999999999999999 789988887
Q ss_pred HHhh
Q psy7925 168 LTIV 171 (472)
Q Consensus 168 ~~~~ 171 (472)
++..
T Consensus 370 ~~~~ 373 (496)
T PRK15238 370 WLQC 373 (496)
T ss_pred HHHH
Confidence 7533
No 76
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=97.59 E-value=0.00063 Score=70.11 Aligned_cols=114 Identities=11% Similarity=0.112 Sum_probs=83.6
Q ss_pred CCChhHHHHHHH-HHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHH
Q psy7925 27 TTDVTSIALSFY-SGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTF 105 (472)
Q Consensus 27 ~~~~~~~~~~~~-~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (472)
++++..+..+.. ...|+|.|+|......+|.|||| +.||+...+..+++++|++..+.....+++++..+.+.|....
T Consensus 174 ~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~-~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~ 252 (359)
T TIGR00912 174 ENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKK-KIKKSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLEL 252 (359)
T ss_pred ccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChh-hhHHHHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHH
Confidence 345667777776 78899999999999999999975 6899999999999999999999999999999998877766555
Q ss_pred HHHhccc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7925 106 ANRIFGP-----IAWTLPVFVALSTFGGVNGIILTTSRLFY 141 (472)
Q Consensus 106 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~sr~~~ 141 (472)
.+..-.+ ....+...-..+.+.......+..++.+-
T Consensus 253 ~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~ 293 (359)
T TIGR00912 253 IKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLS 293 (359)
T ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443222 11222223345555555556666555553
No 77
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=97.32 E-value=6.4e-05 Score=80.62 Aligned_cols=64 Identities=23% Similarity=0.285 Sum_probs=57.6
Q ss_pred cchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcch
Q psy7925 209 SNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSE 285 (472)
Q Consensus 209 ~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~ 285 (472)
+.....++|.|+|+....+||.|+|+|++||++.. +++.+.++|+..+++....+|.++....+
T Consensus 205 ~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~~-------------~~~~~~v~y~~~~~~~~~~~~~~~~~~~~ 268 (478)
T PF00324_consen 205 ALVFAFFAFVGFESIAILAEEAKNPRKTIPRATLL-------------SVLRIGVFYVLTSYALTLAVPYDNLGLTA 268 (478)
T ss_pred hhhhhhcccccccccccccccCCCchhhhhhHhhh-------------hhhhhhhhhhhhhhhcccccCccchhhcc
Confidence 45667789999999999999999999999999999 88999999999999999999998865443
No 78
>KOG1289|consensus
Probab=96.99 E-value=0.00086 Score=72.58 Aligned_cols=67 Identities=12% Similarity=0.033 Sum_probs=45.0
Q ss_pred hhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccC--hhhhhcch--HHH
Q psy7925 213 ALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLS--PAEVLNSE--ATF 288 (472)
Q Consensus 213 ~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp--~~~l~~~~--~~l 288 (472)
..|.+.||.+..-.+||.++++|+.||+++- ++.+..++=-...+..+..+| .|.+.++. +|+
T Consensus 261 ~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~-------------s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~ 327 (550)
T KOG1289|consen 261 PAWTMSGYDAAAHMAEETKNASKAAPRGIIS-------------SIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPI 327 (550)
T ss_pred ceeEEeccCchHHHHHHhcchhhhccHHHHH-------------HHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChH
Confidence 6789999999999999999999999999887 333333332333334444444 34455544 566
Q ss_pred HHHH
Q psy7925 289 ANRI 292 (472)
Q Consensus 289 ~~~~ 292 (472)
++..
T Consensus 328 ~~i~ 331 (550)
T KOG1289|consen 328 VQIY 331 (550)
T ss_pred HHHH
Confidence 6665
No 79
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=96.86 E-value=0.021 Score=60.55 Aligned_cols=118 Identities=15% Similarity=0.157 Sum_probs=87.1
Q ss_pred CChhHHHHHHHHHHHhhcchhhhhhhh----hhhcCc---ccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcch-
Q psy7925 28 TDVTSIALSFYSGLFAYNGWNYLNFII----EELKDP---IVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSE- 99 (472)
Q Consensus 28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~----~E~k~p---~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~- 99 (472)
+.+..++.++...+|+|.|+|.+..++ ||-||| +|..-|++..+..+..++|++-..+....+++++.....
T Consensus 183 ~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~ 262 (397)
T TIGR00814 183 GFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKE 262 (397)
T ss_pred chHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 356789999999999999999999998 777765 577789999999999999999999999999988865321
Q ss_pred ---hHHHHHHHHhccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7925 100 ---AVAVTFANRIFGP-IAWTLPVFVALSTFGGVNGIILTTSRLFYAGAC 145 (472)
Q Consensus 100 ---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~ 145 (472)
+.....+++.-.+ +....+++..++...+..+..++....+..+-+
T Consensus 263 ~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~ 312 (397)
T TIGR00814 263 QNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVL 312 (397)
T ss_pred cCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 2222233333333 355666666777777777777766666655553
No 80
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=96.83 E-value=0.36 Score=51.14 Aligned_cols=116 Identities=16% Similarity=0.205 Sum_probs=84.1
Q ss_pred CCCCChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhc---ch--
Q psy7925 25 NSTTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLN---SE-- 99 (472)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~---~~-- 99 (472)
+...++...+..+...+++|.-.+.+..+.+..++-+|.+.|++..+..+..+.|++-..+....+|.++..+ ++
T Consensus 178 ~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~ 257 (394)
T PF03222_consen 178 PSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGN 257 (394)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCC
Confidence 3456788999999999999999999999999999777889999999999999999999988888898876542 11
Q ss_pred -hHHHHHHHHhcc-ch-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7925 100 -AVAVTFANRIFG-PI-AWTLPVFVALSTFGGVNGIILTTSRLF 140 (472)
Q Consensus 100 -~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~sr~~ 140 (472)
.......++..+ +. .....++..++..++..+..+...+.+
T Consensus 258 ~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l 301 (394)
T PF03222_consen 258 VSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFL 301 (394)
T ss_pred hHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122223233222 22 344566666666666666555544443
No 81
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=96.40 E-value=1.4 Score=45.44 Aligned_cols=101 Identities=7% Similarity=-0.009 Sum_probs=73.1
Q ss_pred hhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHHHH
Q psy7925 212 FALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFANR 291 (472)
Q Consensus 212 ~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~~~ 291 (472)
...++|.|++......|+.|++ |+.||+... +.+.++++|.....+.++++|.+|.++...|..+.
T Consensus 187 ~~~~~f~g~~i~~~~~~~~~~~-~~~~k~~~~-------------~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~ 252 (359)
T TIGR00912 187 VVTFAFGEIEIFFLLFPLLSKK-KKIKKSIIK-------------AIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLEL 252 (359)
T ss_pred HhhhhhHHHHHHHHHHHHhCCh-hhhHHHHHH-------------HHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHH
Confidence 3567888999999998888884 568999888 88999999999999999999999998876654444
Q ss_pred H---hcc-c-hh--H-HHHHHHHHhhhchhhhhhhhhHHHHHh
Q psy7925 292 I---FGP-I-AW--T-LPVFVALSTFGGVNGIILTTSRLFYAG 326 (472)
Q Consensus 292 ~---~G~-~-~~--i-i~i~~l~s~~~~~~~~~~~~SRvl~a~ 326 (472)
. ..+ . .+ . ....-..+.+.......+..++.+..+
T Consensus 253 ~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~ 295 (359)
T TIGR00912 253 IKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKL 295 (359)
T ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 222 1 22 2 223334466666666777777765544
No 82
>PHA02764 hypothetical protein; Provisional
Probab=95.79 E-value=0.033 Score=57.02 Aligned_cols=180 Identities=13% Similarity=0.163 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHHHhcc
Q psy7925 32 SIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFANRIFG 111 (472)
Q Consensus 32 ~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (472)
.++.++..-+-+|.=.|...+.++|.||.+|....+-..|...+.++-+..+ +.. .-..++-
T Consensus 182 t~~~a~~~~l~~~~fi~a~~y~~~ei~n~~k~~~~gyf~s~~~~~~~~ii~s--------y~n------~~il~~~---- 243 (399)
T PHA02764 182 TLLSALLFDLSAFIFINAISYIAGEIKNIKKSSMIGYFVSYGIVAILSIIDS--------YSN------LNILFAL---- 243 (399)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHhhcchhhhhhhhHHHHHHHHHHHHHHh--------hhh------HHHHHHH----
Confidence 4444555556666677888999999999999988888888776665544332 111 1111110
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhHhhhccCCC
Q psy7925 112 PIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQVTKMTP 191 (472)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (472)
..+=.+|-+....=.+||++++|+-|+.+||.|+|.+|+- |. -..+...++-...|.++
T Consensus 244 ---------~~~w~~~y~~~~~~~~srli~~~~fd~~lpe~f~k~~~nv--~~-l~f~~~~~~~~~en~l~--------- 302 (399)
T PHA02764 244 ---------MPIWFFSYMPIANKIQSRLIQTMSFDKVLPEKFSKINPNV--LL-LIFIAETIANVLENLLG--------- 302 (399)
T ss_pred ---------HHHHHHhheeeecchHHHHHHHHHhhhhchHHHhccCCCc--ee-HHHHHHHHHHHHHHHhC---------
Confidence 0001112222233458999999999999999999999763 33 11221221111112211
Q ss_pred chhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHH
Q psy7925 192 TPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVA 271 (472)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~ 271 (472)
+++.+.+=|-.+-+|+|+-+.-. ++.|.|.-.+ . .+..+-.+..+-..+|...+..
T Consensus 303 ---------~~~sf~ldg~lf~~wn~~~~a~~--~~k~~~~ki~---~----------~~~lt~~~~~if~f~y~~y~~~ 358 (399)
T PHA02764 303 ---------FNISFGLDGLLFIFWNFIIVAFA--YLKLMNDKIL---F----------FIVLTSLAIQIFLFFYLGYQNI 358 (399)
T ss_pred ---------CeeeeeccccHHHHHHHHHHHHH--HHHhcCccEE---E----------ehHHHHHHHHHHHHHHHHHHHH
Confidence 23445566778888998877654 5555555111 1 1122333667777778777666
Q ss_pred Hhh
Q psy7925 272 FYT 274 (472)
Q Consensus 272 ~~~ 274 (472)
.++
T Consensus 359 ~~~ 361 (399)
T PHA02764 359 IFY 361 (399)
T ss_pred HHH
Confidence 543
No 83
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=95.72 E-value=3 Score=44.50 Aligned_cols=111 Identities=11% Similarity=0.149 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhc----ch---hHHHH
Q psy7925 32 SIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLN----SE---AVAVT 104 (472)
Q Consensus 32 ~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~----~~---~~~~~ 104 (472)
-++.++...+++|+=...+..+....++-+|.+.|++..+..+..+.|++-..+....+|.++... .. +....
T Consensus 182 ~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~ 261 (403)
T PRK15132 182 LALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQA 261 (403)
T ss_pred HHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHH
Confidence 478888999999998888899988888777899999999999999999999999999999887532 11 22222
Q ss_pred HHHHhccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7925 105 FANRIFGP-IAWTLPVFVALSTFGGVNGIILTTSRLFYA 142 (472)
Q Consensus 105 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~ 142 (472)
..+..-++ .....+++..++..++..+..+.....+.+
T Consensus 262 l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d 300 (403)
T PRK15132 262 LREVVASPHVELAVHLFADLALATSFLGVALGLFDYLAD 300 (403)
T ss_pred HHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222122 234556666666666666655554444433
No 84
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=95.66 E-value=0.12 Score=53.58 Aligned_cols=163 Identities=13% Similarity=0.078 Sum_probs=98.3
Q ss_pred cccc-ccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcch------HHHH--
Q psy7925 219 GFAT-WTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSE------ATFA-- 289 (472)
Q Consensus 219 g~~~-~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~------~~l~-- 289 (472)
|++. .....||.++++|++||++.+ +..++.++|+..+.+..+.+|.+|+.+.. +++.
T Consensus 192 g~~~~i~~~~~~~~~~~k~i~raii~-------------g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~ 258 (381)
T TIGR00837 192 GFHGNVPSLYKYYDGNVKKVKKSILI-------------GSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNA 258 (381)
T ss_pred HcccccHHHHHHhccCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHH
Confidence 5543 333345555449999999999 89999999999999999999999986422 2322
Q ss_pred -HHHhccc--hhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHhhhhH
Q psy7925 290 -NRIFGPI--AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNI 366 (472)
Q Consensus 290 -~~~~G~~--~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l~~~~ 366 (472)
+...+.. ..++.++..++..++.+++..+.++. +++.+++.+++++ |..+..+..+..+++......
T Consensus 259 ~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~---------l~~~~~~~~~~~~-~~~~~~~~~~~pl~~a~~~p~ 328 (381)
T TIGR00837 259 LQGVLKSSAIELALELFSNFALASSFLGVTLGLFDY---------LADLFKFDDSKKG-RFKTGLLTFLPPLVFALFYPE 328 (381)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhCCCcccCC-CchhhhhhHHhHHHHHHHhhH
Confidence 2222322 24567777788888888888777744 4444555443433 566666666666666654322
Q ss_pred HHHHHHHHHHHHHHHHHHHh---HHHhhhhcCCCCCCCcccch
Q psy7925 367 FALINYVGFATWLSIGVGVL---CLPVLRYTQPDLPRPIKVHL 406 (472)
Q Consensus 367 ~~l~~l~~~~~l~~yil~~~---a~~~l~~~~~~~~~~~~~~~ 406 (472)
..+..+...+....++.... -..+.|||++ +.+||.|.
T Consensus 329 ~~~~~l~~~G~~~~~~~~~~p~l~~~~~r~~~~--~~~~~~~~ 369 (381)
T TIGR00837 329 GFLYAIGYAGLAATIWAVIIPALLAWKARKKFP--NAGYRVWG 369 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCccccC
Confidence 22233333333333333332 2233344433 35888887
No 85
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=94.72 E-value=3.3 Score=44.18 Aligned_cols=67 Identities=12% Similarity=0.217 Sum_probs=62.0
Q ss_pred CCChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccc-hhhHHHHHHHHHHHHHHHHHHHHHhccChh
Q psy7925 27 TTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVN-LPRAIYISCTLVTVVYVLTNVAFYTTLSPA 93 (472)
Q Consensus 27 ~~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~-~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~ 93 (472)
+..+..++.++...+++|.+..+...+..|.|++.+. ++|++..+..+..++|+......+..++.+
T Consensus 189 ~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~ 256 (415)
T COG0814 189 QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSL 256 (415)
T ss_pred hhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3678899999999999999999999999999988777 999999999999999999999999998754
No 86
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=93.31 E-value=2.2 Score=43.33 Aligned_cols=116 Identities=12% Similarity=0.137 Sum_probs=83.7
Q ss_pred CCCChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHH
Q psy7925 26 STTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTF 105 (472)
Q Consensus 26 ~~~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (472)
.++++..+..+.....+.|.|.|....+...+|||+| ..|+...+...+++.|.+..+.....+++++..+...|....
T Consensus 170 ~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~-~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~ 248 (320)
T PF03845_consen 170 LESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKK-LKKSLLIAILISGLFLLFIIFITIGVFGPELAKKLTYPVLEL 248 (320)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHH
Confidence 3567888999999999999999999999999999754 689999999999999999999999999998887766554433
Q ss_pred HHHh-----ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7925 106 ANRI-----FGPIAWTLPVFVALSTFGGVNGIILTTSRLFYA 142 (472)
Q Consensus 106 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~ 142 (472)
.+.. +..........-..+.+.......+..++.+-.
T Consensus 249 ~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~ 290 (320)
T PF03845_consen 249 ARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQ 290 (320)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 112222222233445555555556665555543
No 87
>PRK10483 tryptophan permease; Provisional
Probab=93.27 E-value=14 Score=39.71 Aligned_cols=112 Identities=10% Similarity=0.135 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhc----chh--HHH
Q psy7925 30 VTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLN----SEA--VAV 103 (472)
Q Consensus 30 ~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~----~~~--~~~ 103 (472)
+..++.++...+++|+=...+..+.+..++-.|.+.|++..+..+..+.|++-..+..+.+|+++..+ .++ ...
T Consensus 191 ~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~ 270 (414)
T PRK10483 191 APYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLV 270 (414)
T ss_pred HHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHH
Confidence 45677889999999988888888888877655699999999999999999999999999999887532 222 222
Q ss_pred HHHHHhccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7925 104 TFANRIFGP--IAWTLPVFVALSTFGGVNGIILTTSRLFY 141 (472)
Q Consensus 104 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~sr~~~ 141 (472)
....+..+. .....+++..++..++..+..+.....+.
T Consensus 271 ~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~ 310 (414)
T PRK10483 271 QALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLA 310 (414)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233332332 23556666666667776666555544443
No 88
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=92.65 E-value=0.16 Score=38.32 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=37.1
Q ss_pred cccch--hHHHHHHHHHHHHHhhcccccchhHHHHHH-HHHHHHHHHHHHHHHh
Q psy7925 402 IKVHL--IFPAAYLIASVFVTLVPMMASPVETGIGCL-MIATSVPVYMVFIAWR 452 (472)
Q Consensus 402 ~~~~~--~~~il~iv~~l~li~~~~~~~~~~~~i~~~-v~~lgl~iy~~~~~~~ 452 (472)
||+|+ ++|.+++..+.++ +...+...|+.+. +.++|+++|+.|.+|+
T Consensus 1 F~vP~vP~~P~~si~~ni~L----m~~L~~~twirf~iWl~iGl~iYf~YG~~h 50 (51)
T PF13906_consen 1 FKVPLVPFLPALSILINIYL----MAQLSALTWIRFGIWLAIGLVIYFGYGIRH 50 (51)
T ss_pred CCCCcccHHHHHHHHHHHHH----HHHhhHhHHHHHHHHHHHHHHHHHheeeec
Confidence 46676 8999999999999 4556777776666 6899999999877654
No 89
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=92.34 E-value=3.3 Score=45.66 Aligned_cols=105 Identities=15% Similarity=0.086 Sum_probs=52.8
Q ss_pred hHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCCh-hhhcccCCC-CC---chhHHHHHHHHHHH
Q psy7925 285 EATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPE-ILTMIQVTK-MT---PTPAVLTIAFLSLL 359 (472)
Q Consensus 285 ~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~-~f~kv~~k~-~t---P~~al~~~~~i~~i 359 (472)
++|+...++....+-..+.+..++.-+--+.+.++-.+..+.-+-|.+|| ...|.++++ |. |..--++......+
T Consensus 263 ~npFf~~~P~~~~~p~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~v 342 (534)
T PF02705_consen 263 SNPFFLLIPEWLLWPMVILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAV 342 (534)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhh
Confidence 44666655443322233333333322323334455556666677799997 233444333 33 44433333333333
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHhHHH
Q psy7925 360 YLMSSNIFALINYVGFATWLSIGVGVLCLP 389 (472)
Q Consensus 360 i~l~~~~~~l~~l~~~~~l~~yil~~~a~~ 389 (472)
++.+.+-+++.+...+.......++.+-..
T Consensus 343 vl~F~~S~~la~AYGiAVt~tM~iTT~L~~ 372 (534)
T PF02705_consen 343 VLGFRSSSNLAAAYGIAVTGTMLITTILLF 372 (534)
T ss_pred heEECChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666777777666665555555444443
No 90
>PRK09664 tryptophan permease TnaB; Provisional
Probab=91.91 E-value=20 Score=38.41 Aligned_cols=107 Identities=14% Similarity=0.125 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhc----chh---HHH
Q psy7925 31 TSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLN----SEA---VAV 103 (472)
Q Consensus 31 ~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~----~~~---~~~ 103 (472)
..++.++...+++|+=...+..+..-.++-.|.+.|++..+..+..++|++-..+..+.+|+++... .++ ...
T Consensus 193 ~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~ 272 (415)
T PRK09664 193 PYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVK 272 (415)
T ss_pred HHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHH
Confidence 3577788888888887788888877777666888999999999999999999999999999877532 111 122
Q ss_pred HHHHHhccc-hhhHHHHHHHHHHHHHHHHHHHHHH
Q psy7925 104 TFANRIFGP-IAWTLPVFVALSTFGGVNGIILTTS 137 (472)
Q Consensus 104 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s 137 (472)
...++.-+. .....+++..++..++..+..+...
T Consensus 273 s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~ 307 (415)
T PRK09664 273 SFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLF 307 (415)
T ss_pred HHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222 2345555555566666555444433
No 91
>KOG1304|consensus
Probab=91.80 E-value=3.1 Score=44.93 Aligned_cols=63 Identities=21% Similarity=0.431 Sum_probs=56.7
Q ss_pred CChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchh---hHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7925 28 TDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLP---RAIYISCTLVTVVYVLTNVAFYTTLS 91 (472)
Q Consensus 28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p---~a~~~~~~~~~~~y~~~~~~~~~~~~ 91 (472)
+++.++-+.+.++.|||-|.-.+-.+-+|+|+|+ +.| ..+-.++.+++++|......-|...+
T Consensus 238 ~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~-~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG 303 (449)
T KOG1304|consen 238 TGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQ-KFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFG 303 (449)
T ss_pred cchhhhHHHHHHHHHHhccceEEEehhhcccChh-hcCCccchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4588999999999999999999999999999996 557 89999999999999999988888776
No 92
>KOG1303|consensus
Probab=91.68 E-value=1 Score=48.58 Aligned_cols=58 Identities=26% Similarity=0.320 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccCh
Q psy7925 34 ALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSP 92 (472)
Q Consensus 34 ~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~ 92 (472)
..++....|+|.|....-++-..+|+|.+ +.|+.+.+..++++.|..+++.-|.+.+.
T Consensus 231 f~a~g~iaFaf~gH~v~peIq~tMk~p~~-f~~~~lis~~~~~~~y~~vai~GY~aFG~ 288 (437)
T KOG1303|consen 231 FTALGIIAFAYGGHAVLPEIQHTMKSPPK-FKKALLISYIIVTFLYFPVAIIGYWAFGD 288 (437)
T ss_pred hhhhhheeeeecCCeeeeehHhhcCCchh-hhhHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 67899999999999999999999999998 99999999999999999999999988863
No 93
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=88.36 E-value=6 Score=41.87 Aligned_cols=155 Identities=10% Similarity=0.129 Sum_probs=122.5
Q ss_pred cccCCcccccchheeeecccccchhHHHHHH-HHHHHHHHHHHHHHhhccChhhhhc---chH---HHHHHHhccch-hH
Q psy7925 228 RIFGPIAWTLPVFVALSTFGGVNGIILTTSS-VLVTVVYVLTNVAFYTTLSPAEVLN---SEA---TFANRIFGPIA-WT 299 (472)
Q Consensus 228 e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~-l~v~vlY~~~~~~~~~~lp~~~l~~---~~~---~l~~~~~G~~~-~i 299 (472)
+|.+++++..|+.+.. +. ..+...|+-.+.++++..+.+++.+ +++ ..++..+|+.| .+
T Consensus 206 ~g~~~~~~~~~~~i~~-------------G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~l 272 (378)
T TIGR00796 206 RGVTKPKKITKYTIKA-------------GLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFL 272 (378)
T ss_pred hCCCCHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHH
Confidence 3777889999998776 44 6677778888888888888877653 455 45566689987 46
Q ss_pred HHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy7925 300 LPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWL 379 (472)
Q Consensus 300 i~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l~~~~~~l~~l~~~~~l~ 379 (472)
+.+.+..+++++.++.+.++++ +|+|+++| .|+++......+...++...+++++.++..-..++
T Consensus 273 l~i~v~lACLtT~iGli~~~a~-------------~f~~~~~k--~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~ 337 (378)
T TIGR00796 273 LGLIITLACLTTAVGLTTACSE-------------YFHKLVPK--LSYKTWVIVFTLFSFIVANLGLTQIISISIPVLMI 337 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------HHHHhcCC--CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 8888999999999999999666 45555554 99999999988888888888999999999888888
Q ss_pred HHHHHHhHHHh--hhhcCCCCCCCcccchhHHH
Q psy7925 380 SIGVGVLCLPV--LRYTQPDLPRPIKVHLIFPA 410 (472)
Q Consensus 380 ~yil~~~a~~~--l~~~~~~~~~~~~~~~~~~i 410 (472)
.|-......+. +|++.|+.+|+||.+.....
T Consensus 338 ~YP~~i~lill~ll~~~~~~~~~~y~~~~~~~~ 370 (378)
T TIGR00796 338 IYPLAIVLILLSFLRKLWDSKRAVYQITLIVAL 370 (378)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeeehHHHHHH
Confidence 88877777776 77777777899998764433
No 94
>KOG1288|consensus
Probab=87.87 E-value=1.4 Score=49.50 Aligned_cols=97 Identities=12% Similarity=-0.014 Sum_probs=68.4
Q ss_pred cccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHHHHHhccchhHHH
Q psy7925 222 TWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLP 301 (472)
Q Consensus 222 ~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~ 301 (472)
.-++++.|-|.|.|.||+.... ++..-.+.|+++....-...|..-+-++=+.+ +-.--+++++.
T Consensus 312 AGAnMSgELk~PSkSIP~GTl~-------------ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~v~--~~isl~p~fi~ 376 (945)
T KOG1288|consen 312 AGANMSGELKAPSKSIPKGTLS-------------AVAFTFFVYVLVIFLMGCTVPRTLLQNDYDVM--MHISLHPPFIL 376 (945)
T ss_pred cCCCcCccccCccccCCccchH-------------HHHHHHHHHHHHHHHhccCcchHHhhhchhhe--eeccccchHHH
Confidence 3345566666679999999776 77777888888877776666654443322200 00112235567
Q ss_pred HHHHHHhhhchhhhhhhhhHHHHHhhhcCCCC
Q psy7925 302 VFVALSTFGGVNGIILTTSRLFYAGACEGQMP 333 (472)
Q Consensus 302 i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP 333 (472)
++++..++.+.+..+.++||++.++|||..+|
T Consensus 377 iGi~sttlfss~s~liGasrvL~alakD~lfg 408 (945)
T KOG1288|consen 377 IGILSTTLFSSMSGLIGASRVLEALAKDDLFG 408 (945)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhcccch
Confidence 78888888888999999999999999999987
No 95
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=86.98 E-value=48 Score=35.91 Aligned_cols=115 Identities=15% Similarity=0.131 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHhhcchhhhhhhhhh----hc------CcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhc---
Q psy7925 31 TSIALSFYSGLFAYNGWNYLNFIIEE----LK------DPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLN--- 97 (472)
Q Consensus 31 ~~~~~~~~~~~~a~~G~~~~~~~~~E----~k------~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~--- 97 (472)
..++.++...+++|+=...+..+... -+ +.+|..-|++..+..+..++|++-.++..+.++++|..+
T Consensus 209 ~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~ 288 (443)
T PRK13629 209 VTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKA 288 (443)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 35788889999998766666555433 32 234778999999999999999999999999999988753
Q ss_pred -chhHHHHHHHHhcc---------c-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7925 98 -SEAVAVTFANRIFG---------P-IAWTLPVFVALSTFGGVNGIILTTSRLFYAGAC 145 (472)
Q Consensus 98 -~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~ 145 (472)
+.+.....+++.-+ + +....+++..++...+..|-.++.--.+..+.+
T Consensus 289 qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~ 347 (443)
T PRK13629 289 QNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLIL 347 (443)
T ss_pred hCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223333333222 1 355666776777777777766665555555553
No 96
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=85.18 E-value=52 Score=34.39 Aligned_cols=62 Identities=15% Similarity=0.098 Sum_probs=43.7
Q ss_pred cchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHHHh
Q psy7925 45 NGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFANRI 109 (472)
Q Consensus 45 ~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (472)
...-....+++|+|++ |+.-+|-..+-++.+++-.+.+.......+ ++.+.|-|....+++.
T Consensus 193 ~~~avLv~lg~~~~~~-~~~~~g~l~gglIlgvl~~l~nlsLi~~~~--~v~~~dIP~l~i~~~~ 254 (349)
T COG3949 193 VAVAVLVPLGGRMESR-KVSGIGGLIGGLILGVLLFLINLSLIALYD--KVVNYDIPLLTIAKNF 254 (349)
T ss_pred hHhHhhhhhccccccc-chhhhhhhhhhHHHHHHHHHHHHHHHhhcc--hhhccCCcHHHHHHhc
Confidence 3445556778999996 566888888888888887777777666554 6666676666665553
No 97
>PLN03074 auxin influx permease; Provisional
Probab=85.16 E-value=2 Score=46.71 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=53.5
Q ss_pred CChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccCh
Q psy7925 28 TDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSP 92 (472)
Q Consensus 28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~ 92 (472)
+++..+..++...+|+|.|.-..-.+-.|+|||+ +.++....+...+.+.|+...+..|...+.
T Consensus 230 ~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~-~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~ 293 (473)
T PLN03074 230 TKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KFKYIYLAATLYVLTLTLPSAAAVYWAFGD 293 (473)
T ss_pred hhHHHHHHHHHHHHHHhcccccHHHHHHhccChh-cccchHHHHHHHHHHHHHHHHHeeeeeech
Confidence 3566677777789999999999999999999996 589888888888888888887777776663
No 98
>PHA02764 hypothetical protein; Provisional
Probab=84.05 E-value=4 Score=42.26 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=25.3
Q ss_pred hhhhHHHHHhhhcCCCChhhhcccCCCCCch
Q psy7925 317 LTTSRLFYAGACEGQMPEILTMIQVTKMTPT 347 (472)
Q Consensus 317 ~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~ 347 (472)
-..||..++|+-|+.+|+.|+|++| +.|.
T Consensus 257 ~~~srli~~~~fd~~lpe~f~k~~~--nv~~ 285 (399)
T PHA02764 257 KIQSRLIQTMSFDKVLPEKFSKINP--NVLL 285 (399)
T ss_pred chHHHHHHHHHhhhhchHHHhccCC--Ccee
Confidence 3589999999999999999999985 4665
No 99
>PLN00149 potassium transporter; Provisional
Probab=83.90 E-value=18 Score=41.67 Aligned_cols=109 Identities=15% Similarity=0.150 Sum_probs=48.6
Q ss_pred HHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChh-hhcccCC-CCC
Q psy7925 268 TNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEI-LTMIQVT-KMT 345 (472)
Q Consensus 268 ~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~-f~kv~~k-~~t 345 (472)
-+-+++...|.+ ..+.++++...++....|-..+.+..++.-+--+.+.+.-.+..+.-+-|.+|+. .-|.+++ +|.
T Consensus 317 GQaA~l~~~p~~-~~~~~~pFy~~iP~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQ 395 (779)
T PLN00149 317 GQAAYLSKHHVI-ESDYRIGFYVSVPEKLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQ 395 (779)
T ss_pred hHHHHHhcCcch-hccccCcHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCc
Confidence 334444434432 2334457777666555443333333322222233333444455555566899962 3333333 333
Q ss_pred ---chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy7925 346 ---PTPAVLTIAFLSLLYLMSSNIFALINYVGFAT 377 (472)
Q Consensus 346 ---P~~al~~~~~i~~ii~l~~~~~~l~~l~~~~~ 377 (472)
|..--++......+.+.+.+-..+.+...+..
T Consensus 396 IYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV 430 (779)
T PLN00149 396 IYIPEINWTLMLLCLAVTVGFRDTKRLGNASGLAV 430 (779)
T ss_pred eeeHHHHHHHHHHHHhheeEecChHHHHHHhhhhh
Confidence 43333333333333333555666665554443
No 100
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=82.88 E-value=74 Score=34.35 Aligned_cols=107 Identities=15% Similarity=0.140 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCh-hhhhcchH---HHHHHHhccchh-HHHHHHHHHhhhchhhhhhhhhHHHHHhhhc
Q psy7925 255 TTSSVLVTVVYVLTNVAFYTTLSP-AEVLNSEA---TFANRIFGPIAW-TLPVFVALSTFGGVNGIILTTSRLFYAGACE 329 (472)
Q Consensus 255 ~~s~l~v~vlY~~~~~~~~~~lp~-~~l~~~~~---~l~~~~~G~~~~-ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~d 329 (472)
..+.....++|..+.+.-...-+. .+-.|.++ ..++..+|+.|. ++.+....+++.+..+.+.++++.+...-
T Consensus 229 ~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~-- 306 (427)
T PF05525_consen 229 LIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELF-- 306 (427)
T ss_pred HHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 346677788888877766555544 33455555 456666899885 57788888999999999999998877763
Q ss_pred CCCChhhhcccCCCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy7925 330 GQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFA 376 (472)
Q Consensus 330 g~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l~~~~~~l~~l~~~~ 376 (472)
+ |.+++.......+...++.-.+++++.++..=.
T Consensus 307 ------------~-kisY~~~v~i~~i~S~~ian~Gl~~Ii~~s~Pi 340 (427)
T PF05525_consen 307 ------------P-KISYKVWVIIFTIFSFIIANLGLDQIIKISVPI 340 (427)
T ss_pred ------------c-ccChHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 2 456665554444444444444667776555433
No 101
>PLN00151 potassium transporter; Provisional
Probab=81.92 E-value=22 Score=41.17 Aligned_cols=94 Identities=13% Similarity=0.145 Sum_probs=42.2
Q ss_pred chHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCCh-hhhcccCC-CCC---chhHHHHHHHHHH
Q psy7925 284 SEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPE-ILTMIQVT-KMT---PTPAVLTIAFLSL 358 (472)
Q Consensus 284 ~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~-~f~kv~~k-~~t---P~~al~~~~~i~~ 358 (472)
.++++...++....|-..+.+..++.-+--+.+.++-.+..+.-+-|.+|+ +.-|.+++ +|. |..--++......
T Consensus 405 ~~npFy~svP~~~~wP~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw~Lmv~~i~ 484 (852)
T PLN00151 405 AEQIFFSSVPSSLFWPVFLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINWFLLVMCLV 484 (852)
T ss_pred ccCcHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHh
Confidence 344666666555444332322222222222333333444445555689996 23333333 343 4433333333333
Q ss_pred HHHhhhhHHHHHHHHHHHH
Q psy7925 359 LYLMSSNIFALINYVGFAT 377 (472)
Q Consensus 359 ii~l~~~~~~l~~l~~~~~ 377 (472)
+.+.+.+-..+.+...+..
T Consensus 485 v~l~F~~s~~l~~AYGiAV 503 (852)
T PLN00151 485 VVCSFRSITDIGNAYGIAE 503 (852)
T ss_pred heeeecCHHHHHHHhhhhh
Confidence 3333555666665554443
No 102
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=81.78 E-value=0.52 Score=48.94 Aligned_cols=64 Identities=22% Similarity=0.337 Sum_probs=57.3
Q ss_pred CChhHHHHHHHHHHHhhcchhhhhhhhhhhcCccc--chhhHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7925 28 TDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIV--NLPRAIYISCTLVTVVYVLTNVAFYTTLS 91 (472)
Q Consensus 28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~--~~p~a~~~~~~~~~~~y~~~~~~~~~~~~ 91 (472)
.++.++..++....|+|.+....-.+.+|+|||+| ++-|+...+...+.++|.+..+.-+...+
T Consensus 189 ~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg 254 (409)
T PF01490_consen 189 ISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFG 254 (409)
T ss_pred chhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhhhhhHHhhhhhhcccceee
Confidence 45679999999999999999999999999999886 45699999999999999999998888765
No 103
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=81.49 E-value=85 Score=34.05 Aligned_cols=74 Identities=15% Similarity=0.125 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCh-hhhhcchHH---HHHHHhccchh-HHHHHHHHHhhhchhhhhhhhhHHHHHh
Q psy7925 253 ILTTSSVLVTVVYVLTNVAFYTTLSP-AEVLNSEAT---FANRIFGPIAW-TLPVFVALSTFGGVNGIILTTSRLFYAG 326 (472)
Q Consensus 253 ~~~~s~l~v~vlY~~~~~~~~~~lp~-~~l~~~~~~---l~~~~~G~~~~-ii~i~~l~s~~~~~~~~~~~~SRvl~a~ 326 (472)
....+.....++|..+.+.-...-+. +|.+|+++. .....+|+++. +..+....+++.+..+.++++++.+...
T Consensus 231 ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~ 309 (439)
T PRK15433 231 AGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQY 309 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33557788888998888777655442 334455653 44455788875 4667778899999999999999876554
No 104
>KOG2082|consensus
Probab=81.41 E-value=0.85 Score=51.59 Aligned_cols=66 Identities=12% Similarity=0.033 Sum_probs=36.9
Q ss_pred hccCCcchhHhHhhhcc------CCCc-------hhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccc
Q psy7925 172 TCEGQMPEILTMIQVTK------MTPT-------PAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLP 238 (472)
Q Consensus 172 ~~~~~~~~~~~~~~~~~------~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip 238 (472)
.-+..+|+.+.|-++.+ ..|+ ....+..|--++-.||- +--|+-+-.+-+..-+++||.||
T Consensus 371 ~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFP------sVTGImaGSNrSGDLkDaQkSIP 444 (1075)
T KOG2082|consen 371 FKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFP------SVTGIMAGSNRSGDLKDAQKSIP 444 (1075)
T ss_pred hhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhcc------ccceeeecCCCCccccchhhcCc
Confidence 34556677766666554 2222 22233333333222332 33444455566677788899999
Q ss_pred hheee
Q psy7925 239 VFVAL 243 (472)
Q Consensus 239 ~~i~i 243 (472)
.....
T Consensus 445 vGTI~ 449 (1075)
T KOG2082|consen 445 VGTIA 449 (1075)
T ss_pred hhhhH
Confidence 98777
No 105
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=81.22 E-value=20 Score=40.89 Aligned_cols=99 Identities=14% Similarity=0.032 Sum_probs=45.1
Q ss_pred hHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCCh-hhhcccCC-CCC---chhHHHHHHHHHHH
Q psy7925 285 EATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPE-ILTMIQVT-KMT---PTPAVLTIAFLSLL 359 (472)
Q Consensus 285 ~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~-~f~kv~~k-~~t---P~~al~~~~~i~~i 359 (472)
.+|+...++....+-..+.+..++.-+--+.+.++-.+..+.-+-|.+|+ ..-|.+++ +|. |..--++......+
T Consensus 300 ~NpFf~~~P~~~~~p~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~v 379 (688)
T TIGR00794 300 KNPFFLSIPDWALWPLFIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVIAV 379 (688)
T ss_pred cCcHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHhe
Confidence 34666655433333222222222222222333344455556666799996 33444444 333 43333333333333
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHH
Q psy7925 360 YLMSSNIFALINYVGFATWLSIGV 383 (472)
Q Consensus 360 i~l~~~~~~l~~l~~~~~l~~yil 383 (472)
.+.+.+-..+.+..++......++
T Consensus 380 vl~F~~S~~la~AYGiaVt~tM~i 403 (688)
T TIGR00794 380 TAGFRDTNNLGAAYGIAVTGTFLV 403 (688)
T ss_pred eEEecChHHHHHHhhhhhhhhhHH
Confidence 333556667766555544333333
No 106
>PLN00148 potassium transporter; Provisional
Probab=80.73 E-value=23 Score=40.80 Aligned_cols=92 Identities=16% Similarity=0.205 Sum_probs=42.4
Q ss_pred hHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCCh-hhhcccCC-CCC---chhHHHHHHHHHHH
Q psy7925 285 EATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPE-ILTMIQVT-KMT---PTPAVLTIAFLSLL 359 (472)
Q Consensus 285 ~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~-~f~kv~~k-~~t---P~~al~~~~~i~~i 359 (472)
++++...++....|-..+.+.+++.-+--+.+.++-.+..+.-+-|.+|+ +.-|.+++ +|. |..--++......+
T Consensus 329 ~npFf~~iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~v 408 (785)
T PLN00148 329 PNSFYDSIPDPVFWPVFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLAV 408 (785)
T ss_pred cCcHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHHh
Confidence 45677666555444333333332222222333344445555556689996 23333333 343 44333333333333
Q ss_pred HHhhhhHHHHHHHHHHH
Q psy7925 360 YLMSSNIFALINYVGFA 376 (472)
Q Consensus 360 i~l~~~~~~l~~l~~~~ 376 (472)
.+.+.+-..+.+...+.
T Consensus 409 v~~F~~s~~la~AYGiA 425 (785)
T PLN00148 409 TIGFRDTTLIGNAYGLA 425 (785)
T ss_pred heeeccchhHHHhhhhh
Confidence 33355555666555443
No 107
>PLN00150 potassium ion transporter family protein; Provisional
Probab=80.44 E-value=21 Score=41.14 Aligned_cols=94 Identities=15% Similarity=0.166 Sum_probs=43.0
Q ss_pred chHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCCh-hhhcccCC-CCC---chhHHHHHHHHHH
Q psy7925 284 SEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPE-ILTMIQVT-KMT---PTPAVLTIAFLSL 358 (472)
Q Consensus 284 ~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~-~f~kv~~k-~~t---P~~al~~~~~i~~ 358 (472)
.++++...++....|-..+.+..++.-+--+.+.++-.+..+.-+-|.+|+ +.-|.+++ +|. |..--++......
T Consensus 345 ~~npFf~~iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vNw~Lmv~~i~ 424 (779)
T PLN00150 345 VNDPFYRSLPKPIYWPIFVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEINWILMVLCLV 424 (779)
T ss_pred ccCcHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHh
Confidence 344666666554444333333332222223333344445555556689996 23333433 333 4333333333333
Q ss_pred HHHhhhhHHHHHHHHHHHH
Q psy7925 359 LYLMSSNIFALINYVGFAT 377 (472)
Q Consensus 359 ii~l~~~~~~l~~l~~~~~ 377 (472)
+.+.+.+-..+.+...+..
T Consensus 425 vv~~F~~s~~l~~AYGiAV 443 (779)
T PLN00150 425 ITAGFRDTDEIGNAYGIAV 443 (779)
T ss_pred heEEecChHHHHHHhhhhe
Confidence 3333556666665555443
No 108
>KOG1305|consensus
Probab=78.36 E-value=1e+02 Score=33.09 Aligned_cols=64 Identities=27% Similarity=0.329 Sum_probs=56.9
Q ss_pred ChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcc-cchhhHHHHHHHHHHHHHHHHHHHHHhccCh
Q psy7925 29 DVTSIALSFYSGLFAYNGWNYLNFIIEELKDPI-VNLPRAIYISCTLVTVVYVLTNVAFYTTLSP 92 (472)
Q Consensus 29 ~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~-~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~ 92 (472)
.+.++..++....++|...++.--+-.|.|||. |++-+....+...+..+|.++...-|...+.
T Consensus 192 ~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~ 256 (411)
T KOG1305|consen 192 SFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAIILATLIYLLTGLFGYLTFGD 256 (411)
T ss_pred hhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHHHHHHHHHHHHHHhhhheecc
Confidence 346888899999999999999999999999988 5788888899999999999999998888864
No 109
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=78.34 E-value=21 Score=40.22 Aligned_cols=94 Identities=14% Similarity=0.029 Sum_probs=42.2
Q ss_pred hHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCCh-hhhcccCC-CCC---chhHHHHHHHHHHH
Q psy7925 285 EATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPE-ILTMIQVT-KMT---PTPAVLTIAFLSLL 359 (472)
Q Consensus 285 ~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~-~f~kv~~k-~~t---P~~al~~~~~i~~i 359 (472)
++|+...+.....+-..+.+.+++.-+--+.+.++-.+..+.-+-|++|+ ..-|.+++ .|. |..--.+......+
T Consensus 274 ~NpFf~~~P~~~~~p~viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~vNw~Lmv~~i~~ 353 (622)
T PRK10745 274 KNPFFLLAPDWALIPLLILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPFVNWLLYVAVVIV 353 (622)
T ss_pred cCcHHHhCChhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHee
Confidence 44666655433222222222222222222333344455556667799997 33444434 333 33322222222222
Q ss_pred HHhhhhHHHHHHHHHHHHH
Q psy7925 360 YLMSSNIFALINYVGFATW 378 (472)
Q Consensus 360 i~l~~~~~~l~~l~~~~~l 378 (472)
++.+.+.+.+.+...+...
T Consensus 354 vl~F~sS~~La~AYGiAVt 372 (622)
T PRK10745 354 IVSFEHSSNLAAAYGIAVT 372 (622)
T ss_pred EEEecCchHHHHHhhhhhe
Confidence 3335566667665555433
No 110
>PTZ00206 amino acid transporter; Provisional
Probab=76.07 E-value=4.3 Score=43.92 Aligned_cols=60 Identities=17% Similarity=0.063 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhhcchhhhhhhhhhhcCcc-cchhhHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7925 32 SIALSFYSGLFAYNGWNYLNFIIEELKDPI-VNLPRAIYISCTLVTVVYVLTNVAFYTTLS 91 (472)
Q Consensus 32 ~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~-~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~ 91 (472)
....++....|+|.+....-.+-+|+|||. |+..++...+..++.++|.+..+.-|...+
T Consensus 257 ~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG 317 (467)
T PTZ00206 257 RAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDFG 317 (467)
T ss_pred HHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 567789999999999999999999999965 678899999999999999999999998886
No 111
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=75.13 E-value=16 Score=38.92 Aligned_cols=103 Identities=12% Similarity=0.119 Sum_probs=63.2
Q ss_pred hhhhcccccccccccc----cccCCc---ccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcc
Q psy7925 212 FALINYVGFATWTFAN----RIFGPI---AWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNS 284 (472)
Q Consensus 212 ~~l~~f~g~~~~~~~~----e~~~~~---~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~ 284 (472)
..+++|.+.+...... ||.+++ +|...|.+.. +..+..+.|+.-..++.+.+|.+|..+.
T Consensus 194 v~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~-------------~~~i~~~~y~~~~~s~~~~l~~~~~~~a 260 (397)
T TIGR00814 194 VMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKG-------------ASLILVATVMFFVFSCVLSLSPAEAVAA 260 (397)
T ss_pred HHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 3456777778777775 554422 6777777777 7888999999999999999999997543
Q ss_pred hH----H---HHHHHhccc-hhHHHHHHHHHhhhchhhhhhhhhHHHHHhh
Q psy7925 285 EA----T---FANRIFGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGA 327 (472)
Q Consensus 285 ~~----~---l~~~~~G~~-~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a 327 (472)
.+ . +++....+. ..+..+...++..++-.+-..+....+..+-
T Consensus 261 ~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~ 311 (397)
T TIGR00814 261 KEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIV 311 (397)
T ss_pred HHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 21 2 222222332 2233444444445555555555555544444
No 112
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=72.97 E-value=1.3e+02 Score=31.81 Aligned_cols=45 Identities=7% Similarity=0.057 Sum_probs=27.0
Q ss_pred HHHHHHHhccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7925 102 AVTFANRIFGPIA-WTLPVFVALSTFGGVNGIILTTSRLFYAGACE 146 (472)
Q Consensus 102 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~ 146 (472)
....+++.+|+.+ +...+...+-..+.+..++...+..+.+.-..
T Consensus 67 ~~~~a~~~lG~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~ 112 (394)
T PF03222_consen 67 LTSMAEKYLGKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGN 112 (394)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 4456677777764 44445555666666666666666666555433
No 113
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=70.30 E-value=1.6e+02 Score=31.74 Aligned_cols=69 Identities=17% Similarity=0.305 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCh---hhhhcchHH---HHHHHhccchh-HHHHHHHHHhhhchhhhhhhhhHHHHH
Q psy7925 255 TTSSVLVTVVYVLTNVAFYTTLSP---AEVLNSEAT---FANRIFGPIAW-TLPVFVALSTFGGVNGIILTTSRLFYA 325 (472)
Q Consensus 255 ~~s~l~v~vlY~~~~~~~~~~lp~---~~l~~~~~~---l~~~~~G~~~~-ii~i~~l~s~~~~~~~~~~~~SRvl~a 325 (472)
..+.+....+|+.+.+.- ..+. ++..|+.+. ..+..+|+.|. ++.+.+.++++.+..+.+.+++..+..
T Consensus 231 lIa~i~La~iY~~L~ylG--a~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~ 306 (431)
T COG1114 231 LIAAILLALIYLSLFYLG--ATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSK 306 (431)
T ss_pred HHHHHHHHHHHHHHHHhc--cchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777655544 3333 223445554 44455899875 467777788888888888888875543
No 114
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=68.83 E-value=27 Score=38.82 Aligned_cols=59 Identities=17% Similarity=0.122 Sum_probs=29.8
Q ss_pred hhhHHHHHhhhcCCCChh-hhcccCC-CCC---chhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy7925 318 TTSRLFYAGACEGQMPEI-LTMIQVT-KMT---PTPAVLTIAFLSLLYLMSSNIFALINYVGFA 376 (472)
Q Consensus 318 ~~SRvl~a~a~dg~LP~~-f~kv~~k-~~t---P~~al~~~~~i~~ii~l~~~~~~l~~l~~~~ 376 (472)
++-.+..+.-|-|++|+. ..|.+++ .|. |.....+......++..+..-..+.+..++.
T Consensus 312 GaFSLtrQAi~Lg~lPrm~I~~TSe~~~GQIYiP~VN~~L~~~V~~~vl~F~~S~~LAaAYGiA 375 (627)
T COG3158 312 GAFSLTRQAIRLGYLPRMRIRHTSETESGQIYIPAVNWLLLVAVVFVVLGFGSSSNLAAAYGIA 375 (627)
T ss_pred hHhHHHHHHHHhCCCCceEEEecCCcccceEEehHHHHHHHHHHhheeeEecChHHHHHhhChh
Confidence 344444455566999962 3343333 333 5444444444444444455566666555443
No 115
>PTZ00206 amino acid transporter; Provisional
Probab=60.69 E-value=2.5e+02 Score=30.40 Aligned_cols=52 Identities=15% Similarity=0.278 Sum_probs=38.0
Q ss_pred HHHHHHHhccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhh
Q psy7925 102 AVTFANRIFGPIA-WTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEIL 153 (472)
Q Consensus 102 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~ 153 (472)
..+.+++.+|+.+ +.+++...+..+|...+++...+..+...-+....|+.+
T Consensus 123 Y~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~ 175 (467)
T PTZ00206 123 YEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFL 175 (467)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence 3455666677764 777888899999999999999988887665544444444
No 116
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=58.71 E-value=1.6e+02 Score=31.42 Aligned_cols=37 Identities=14% Similarity=0.210 Sum_probs=30.8
Q ss_pred cccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhh
Q psy7925 233 IAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVL 282 (472)
Q Consensus 233 ~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~ 282 (472)
.+|.++|++.+ +.++..+.|+.=..+.++++|.+|..
T Consensus 210 ~~~~~~k~i~~-------------Gs~i~li~yl~W~~~~lg~l~~~~~~ 246 (403)
T PRK15132 210 NIRKLRWVFII-------------GSAIPLVAYIFWQLATLGSIDSTTFM 246 (403)
T ss_pred CHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 35778888877 77899999999999999999988754
No 117
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=56.79 E-value=1.1e+02 Score=32.93 Aligned_cols=87 Identities=20% Similarity=0.188 Sum_probs=57.4
Q ss_pred cCcccchhhHHHHHHHHHHHHHHHHHHHHHhccCh-hhhhcchhHHHHHHHHhccchh-hHHHHHHHHHHHHHHHHHHHH
Q psy7925 58 KDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSP-AEVLNSEAVAVTFANRIFGPIA-WTLPVFVALSTFGGVNGIILT 135 (472)
Q Consensus 58 k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 135 (472)
|+-+|..-++-.++.+...++|......-...-+. ++-.+.........++.+|+.+ ....+.+.++++.+..+-+..
T Consensus 218 k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a 297 (427)
T PF05525_consen 218 KEIKKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISA 297 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555556666666776655443333222 2233444567778899999986 566788899999999998888
Q ss_pred HHHHHHHHH
Q psy7925 136 TSRLFYAGA 144 (472)
Q Consensus 136 ~sr~~~~~~ 144 (472)
.+.++.+..
T Consensus 298 ~a~yf~~~~ 306 (427)
T PF05525_consen 298 CAEYFSELF 306 (427)
T ss_pred HHHHHHHHh
Confidence 888876655
No 118
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=47.51 E-value=2.4e+02 Score=30.68 Aligned_cols=82 Identities=16% Similarity=0.181 Sum_probs=52.2
Q ss_pred ccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcc-----h--HHHHHHHhcc---------c-
Q psy7925 234 AWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNS-----E--ATFANRIFGP---------I- 296 (472)
Q Consensus 234 ~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~-----~--~~l~~~~~G~---------~- 296 (472)
+|...|++.+ +..+..+.|++-..++.+++|.+|+.+. + +-+++...+. .
T Consensus 249 ~~k~~rii~~-------------gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i 315 (443)
T PRK13629 249 ERKCSQIISR-------------ASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITL 315 (443)
T ss_pred HHHHHHHHHH-------------HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHH
Confidence 6778888777 8899999999999999999999997432 2 1344444441 1
Q ss_pred hhHHHHHHHHHhhhchhhhhhhhhHHHHHhhh
Q psy7925 297 AWTLPVFVALSTFGGVNGIILTTSRLFYAGAC 328 (472)
Q Consensus 297 ~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~ 328 (472)
.....+...++..++-.+-..+....+..+.+
T Consensus 316 ~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~ 347 (443)
T PRK13629 316 EYAASIIALVAIFKSFFGHYLGTLEGLNGLIL 347 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334444445555555555555555555553
No 119
>PRK11375 allantoin permease; Provisional
Probab=42.71 E-value=4.8e+02 Score=28.42 Aligned_cols=45 Identities=0% Similarity=-0.167 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHhhc-chhhhhhhhhhhcCcccchhhHHHHHHHHHH
Q psy7925 31 TSIALSFYSGLFAYN-GWNYLNFIIEELKDPIVNLPRAIYISCTLVT 76 (472)
Q Consensus 31 ~~~~~~~~~~~~a~~-G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~ 76 (472)
..+..++...+=.+. +.-+....+...||+|.. -++...+..+..
T Consensus 227 ~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~~~~-~~~~~~g~~i~~ 272 (484)
T PRK11375 227 FLFLVVINAVVAVWAAPAVSASDFTQNAHSFRAQ-ALGQTLGLVVAY 272 (484)
T ss_pred HHHHHHHHHHHHHHHHHHccccchhcccCChhhh-HHHHHHHHHHHH
Confidence 445544434333343 333456778888887544 445444444333
No 120
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=37.67 E-value=39 Score=30.20 Aligned_cols=12 Identities=17% Similarity=0.207 Sum_probs=3.8
Q ss_pred HHHHHHHHhccC
Q psy7925 444 VYMVFIAWRNKP 455 (472)
Q Consensus 444 iy~~~~~~~~~~ 455 (472)
++|..+|+|+|+
T Consensus 84 i~y~irR~~Kk~ 95 (122)
T PF01102_consen 84 ISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHS---
T ss_pred HHHHHHHHhccC
Confidence 344344444444
No 121
>PRK10483 tryptophan permease; Provisional
Probab=35.78 E-value=5.9e+02 Score=27.42 Aligned_cols=36 Identities=11% Similarity=0.199 Sum_probs=30.5
Q ss_pred ccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhh
Q psy7925 234 AWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVL 282 (472)
Q Consensus 234 ~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~ 282 (472)
+|.++|++.+ +.++-.++|+.=..+.++++|.+|+.
T Consensus 222 ~~kir~~I~i-------------Gs~Iplv~yl~W~~~~lg~l~~~~~~ 257 (414)
T PRK10483 222 PKTIVKCLVY-------------GTLMALALYTIWLLATMGNIPRPEFI 257 (414)
T ss_pred HHHHHHHHHH-------------HHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 4588888888 88999999999999999999987753
No 122
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=35.17 E-value=1e+02 Score=23.73 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHH
Q psy7925 34 ALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVY 79 (472)
Q Consensus 34 ~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y 79 (472)
++.+-+.+|++.|-.+-.+..++.++.+ |...+..-++.++++
T Consensus 2 ~~~~~sVl~af~GVqs~~~~e~Df~~~~---p~~~Ii~gii~~~~f 44 (56)
T PF11174_consen 2 WQVVKSVLWAFFGVQSSKNRERDFAQGS---PVHFIIVGIILAALF 44 (56)
T ss_pred HHHHHHHHHHHhCcCcchhHHHHHHcCC---CchHHHHHHHHHHHH
Confidence 4567788999999999999888887643 444444433333333
No 123
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=34.63 E-value=2.8e+02 Score=29.99 Aligned_cols=108 Identities=12% Similarity=0.028 Sum_probs=64.4
Q ss_pred HHHHHHHhh---cchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChh---hhhcchhHHHHHHHHh
Q psy7925 36 SFYSGLFAY---NGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPA---EVLNSEAVAVTFANRI 109 (472)
Q Consensus 36 ~~~~~~~a~---~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 109 (472)
|+.=+.|+= .|....++-+.|++||.|.=-.++.-..+=+.++-.++.......-.++ ++ +.........+..
T Consensus 251 Gv~Rg~fSNEAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~-~g~~lt~~af~~~ 329 (425)
T TIGR00835 251 GVKRGLFSNEAGMGSAPIAAAAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGL-SGAQLTQQALSYG 329 (425)
T ss_pred hhHHHHhccccccCcHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCC-cHHHHHHHHHHHH
Confidence 444455543 3666667778888999887444444443323444444444433333222 21 1223334445555
Q ss_pred ccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7925 110 FGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGA 144 (472)
Q Consensus 110 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~ 144 (472)
++.+ ...+.+.+.+-.++++++..+.+-+.+.-+-
T Consensus 330 ~g~~g~~~v~i~~~lFaftTii~~~yyge~~~~yl~ 365 (425)
T TIGR00835 330 LGSFGAVFVAVALFLFAFSTIIGWYYYGEKNAEFLK 365 (425)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5644 4677888888899999999999888887764
No 124
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=32.73 E-value=3.8e+02 Score=24.30 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=9.2
Q ss_pred ccchhH--HHHHHHHHhhhchhh
Q psy7925 294 GPIAWT--LPVFVALSTFGGVNG 314 (472)
Q Consensus 294 G~~~~i--i~i~~l~s~~~~~~~ 314 (472)
|..||+ ..++.+.+.+.....
T Consensus 6 ~IGGWL~lp~iglils~l~~~~~ 28 (149)
T PF10754_consen 6 GIGGWLILPAIGLILSPLSTSLM 28 (149)
T ss_pred CcchHHHHHHHHHHHHHHHHHHH
Confidence 334444 334444455544333
No 125
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=32.38 E-value=2.8e+02 Score=30.12 Aligned_cols=88 Identities=13% Similarity=0.120 Sum_probs=55.9
Q ss_pred hhcCcc---cchhhHHHHHHHHHHHHHHHHHHHHHhccC-hhhhhcchhHHHHHHHHhccchh-hHHHHHHHHHHHHHHH
Q psy7925 56 ELKDPI---VNLPRAIYISCTLVTVVYVLTNVAFYTTLS-PAEVLNSEAVAVTFANRIFGPIA-WTLPVFVALSTFGGVN 130 (472)
Q Consensus 56 E~k~p~---~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 130 (472)
..||+| |..-++-.++.+...++|......--...+ .++..+.........++.+|+.+ ....+.+.+.++.+..
T Consensus 217 G~~~~~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaI 296 (439)
T PRK15433 217 GVTEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAV 296 (439)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 355544 344455555666666777765544333322 22222334455556778888875 6667888999999999
Q ss_pred HHHHHHHHHHHHH
Q psy7925 131 GIILTTSRLFYAG 143 (472)
Q Consensus 131 ~~~~~~sr~~~~~ 143 (472)
+.+...++.+.+.
T Consensus 297 GLi~a~a~~f~~~ 309 (439)
T PRK15433 297 GLTCACAEFFAQY 309 (439)
T ss_pred HHHHHHHHHHHhh
Confidence 9998888887554
No 126
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=28.79 E-value=2e+02 Score=30.95 Aligned_cols=109 Identities=14% Similarity=0.093 Sum_probs=67.6
Q ss_pred HHHHHHHhh---cchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhh--hcchhHHHHHHHHhc
Q psy7925 36 SFYSGLFAY---NGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEV--LNSEAVAVTFANRIF 110 (472)
Q Consensus 36 ~~~~~~~a~---~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 110 (472)
|+.=.+|+= .|....++-+.|+|||.|.=-.++.-..+=..++-.++.......-.+++. .+.........++.+
T Consensus 224 Gv~Rg~fSNEAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~ 303 (416)
T PF01235_consen 224 GVARGLFSNEAGLGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVL 303 (416)
T ss_pred hhhhhhccCCCCCChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhh
Confidence 444445543 466666777889999988755555544444444445555554444332211 122233444556666
Q ss_pred cch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7925 111 GPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGA 144 (472)
Q Consensus 111 ~~~-~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~ 144 (472)
+.+ ...+.+.+.+-.+++++++.+.+-|.+.-+-
T Consensus 304 g~~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 304 GSWGPYFVAIALFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 665 4677788888889999999999988887666
No 127
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=28.68 E-value=3.6e+02 Score=29.40 Aligned_cols=115 Identities=12% Similarity=0.012 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhh---cchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhh--cchhHHHHHH
Q psy7925 32 SIALSFYSGLFAY---NGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVL--NSEAVAVTFA 106 (472)
Q Consensus 32 ~~~~~~~~~~~a~---~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 106 (472)
.+..|+.=.+|+= .|....++.+.++|||-|.=-..+....+=..++..++.++....-.++... +..+.-....
T Consensus 264 aI~~Gv~RGlfSNEAGmGsap~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~ 343 (452)
T COG1115 264 AIRNGVKRGLFSNEAGMGSAPIAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAF 343 (452)
T ss_pred HHHHHHHHHhhcccccCCcchhHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHH
Confidence 4455555566654 3556666778888898877433333333324444455555554444332222 3334555556
Q ss_pred HHhccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7925 107 NRIFGPIA-WTLPVFVALSTFGGVNGIILTTSRLFYAGACE 146 (472)
Q Consensus 107 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~ 146 (472)
++.+|.++ ..+.+.+.+=.+++++++.+.+=|++.-+-++
T Consensus 344 ~~~~g~~G~~fv~i~l~lFafTTIlg~yyyge~~~~fl~~~ 384 (452)
T COG1115 344 SSHLGSWGSYFVAIALFLFAFTTILGWYYYGEKNIEFLFGS 384 (452)
T ss_pred HHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 67777654 67778888889999999999999998777643
No 128
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=28.52 E-value=2.7e+02 Score=27.01 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=5.0
Q ss_pred HhhhhcCCCCCC
Q psy7925 389 PVLRYTQPDLPR 400 (472)
Q Consensus 389 ~~l~~~~~~~~~ 400 (472)
-+..|++|+..+
T Consensus 43 a~~~r~~p~~~~ 54 (211)
T PF13194_consen 43 ARRSRENPELSR 54 (211)
T ss_pred HHHHhhCcchhH
Confidence 344444444333
No 129
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=27.11 E-value=5.5e+02 Score=24.43 Aligned_cols=16 Identities=13% Similarity=0.162 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHhcc
Q psy7925 439 ATSVPVYMVFIAWRNK 454 (472)
Q Consensus 439 ~lgl~iy~~~~~~~~~ 454 (472)
++|++.+..+++.|+|
T Consensus 185 iig~i~~~~~~~lkkk 200 (206)
T PF06570_consen 185 IIGVIAFALRFYLKKK 200 (206)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 130
>PF14256 YwiC: YwiC-like protein
Probab=27.06 E-value=4.6e+02 Score=23.43 Aligned_cols=15 Identities=13% Similarity=-0.221 Sum_probs=6.0
Q ss_pred HHHHHHhHHHhhhhc
Q psy7925 380 SIGVGVLCLPVLRYT 394 (472)
Q Consensus 380 ~yil~~~a~~~l~~~ 394 (472)
.|....-....+|.|
T Consensus 37 ~yl~~~p~~~~~k~r 51 (129)
T PF14256_consen 37 GYLAFYPFLLWLKQR 51 (129)
T ss_pred HHHHHHHHHHHHhcc
Confidence 444433333344433
No 131
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=26.95 E-value=8.4e+02 Score=26.48 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=13.9
Q ss_pred HHHHHHHHhhhchhhhhhhhhHHH
Q psy7925 300 LPVFVALSTFGGVNGIILTTSRLF 323 (472)
Q Consensus 300 i~i~~l~s~~~~~~~~~~~~SRvl 323 (472)
+...++.+..++..+.+.+.|-.+
T Consensus 330 ~~a~ilAA~mST~~s~l~a~ss~~ 353 (502)
T PRK15419 330 LLSAILAAVMSTLSCQLLVCSSAI 353 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666666666665443
No 132
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=25.25 E-value=5e+02 Score=23.24 Aligned_cols=29 Identities=7% Similarity=-0.081 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy7925 363 SSNIFALINYVGFATWLSIGVGVLCLPVL 391 (472)
Q Consensus 363 ~~~~~~l~~l~~~~~l~~yil~~~a~~~l 391 (472)
..+++.+....-+......++........
T Consensus 53 A~nW~~i~~~~k~~~~~~~~~~~~~~~~~ 81 (145)
T PF09925_consen 53 AANWDDIPRLAKLGLLLALLLLSYVGGFW 81 (145)
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 35777777777666666555544444333
No 133
>COG4025 Predicted membrane protein [Function unknown]
Probab=21.92 E-value=3.8e+02 Score=26.85 Aligned_cols=15 Identities=20% Similarity=0.120 Sum_probs=12.4
Q ss_pred hhHHHHHhhhcCCCC
Q psy7925 319 TSRLFYAGACEGQMP 333 (472)
Q Consensus 319 ~SRvl~a~a~dg~LP 333 (472)
.-|-+.++.||+++|
T Consensus 56 ~ve~v~e~~re~~i~ 70 (284)
T COG4025 56 KVEKVMEKVREFQIP 70 (284)
T ss_pred HHHHHHHHHhcCCCc
Confidence 457788999999987
No 134
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=21.16 E-value=6.5e+02 Score=26.55 Aligned_cols=77 Identities=13% Similarity=0.122 Sum_probs=45.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHHHHH-hccchhHHHHHHHHHhhhchhhhhhhhhHHHHHh
Q psy7925 249 VNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFANRI-FGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAG 326 (472)
Q Consensus 249 ~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~~~~-~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~ 326 (472)
-+|.=-.+++++.+++|.+.+...+ .+++...+.+=++..+.+ .+.++++..+......++.......+++..+.++
T Consensus 33 ~~G~~s~~gIivs~vlf~~~g~vim-~ig~~f~a~~y~~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~ 110 (349)
T COG3949 33 KYGVYSILGIILSTVLFTLSGAVIM-TIGKKFNATSYREILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEM 110 (349)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHhcccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 3344445578888888888776654 445544444444444555 4444677766666666666555555555444433
No 135
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=21.04 E-value=9.7e+02 Score=26.19 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=21.4
Q ss_pred HhhhchhhhhhhhhHHHHHhhhcCCCChhh
Q psy7925 307 STFGGVNGIILTTSRLFYAGACEGQMPEIL 336 (472)
Q Consensus 307 s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f 336 (472)
+..++.....|+.|+.+..+=-|+.=||.|
T Consensus 67 G~i~s~f~i~YG~sKf~~G~~sDr~npr~f 96 (448)
T COG2271 67 GILGSAFSITYGVSKFVMGVLSDRSNPRYF 96 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCcee
Confidence 345566677888999888887777766543
No 136
>PRK10654 dcuC C4-dicarboxylate transporter DcuC; Provisional
Probab=20.43 E-value=9.7e+02 Score=26.07 Aligned_cols=46 Identities=7% Similarity=0.006 Sum_probs=29.9
Q ss_pred hhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHh
Q psy7925 317 LTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLM 362 (472)
Q Consensus 317 ~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l 362 (472)
.+.++++.+-+-|+.+=+...|.-.|-|.|+..+....+++.+...
T Consensus 87 ~gFa~yM~~iGa~~~lv~l~~~pl~~ir~p~~~l~~~~l~~~~~~~ 132 (455)
T PRK10654 87 CGFAAYMTHIGANDMVVKLASKPLQYINSPYLLMIAAYFVACLMSL 132 (455)
T ss_pred HHHHHHHhhcCchHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHH
Confidence 3455555666666666555566555777798877777777666654
No 137
>PTZ00370 STEVOR; Provisional
Probab=20.32 E-value=1.6e+02 Score=30.11 Aligned_cols=25 Identities=12% Similarity=0.117 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCcc
Q psy7925 432 GIGCLMIATSVPVYMVFIAWRNKPKV 457 (472)
Q Consensus 432 ~i~~~v~~lgl~iy~~~~~~~~~~~~ 457 (472)
.+.++..++.+++|.|. |||||+.|
T Consensus 262 lvllil~vvliilYiwl-yrrRK~sw 286 (296)
T PTZ00370 262 LVLLILAVVLIILYIWL-YRRRKNSW 286 (296)
T ss_pred HHHHHHHHHHHHHHHHH-HHhhcchh
Confidence 33333444444455554 44444444
Done!