Query psy7925
Match_columns 472
No_of_seqs 155 out of 1687
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 22:23:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7925.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7925hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 100.0 1.8E-27 6.1E-32 246.9 24.6 238 29-455 189-434 (445)
2 4djk_A Probable glutamate/gamm 99.9 4.2E-26 1.4E-30 240.9 25.3 210 33-426 203-433 (511)
3 3gia_A Uncharacterized protein 99.9 7E-26 2.4E-30 235.1 24.7 247 17-455 174-426 (444)
4 3gia_A Uncharacterized protein 99.5 2.6E-14 8.8E-19 148.0 13.3 61 212-285 196-256 (444)
5 3l1l_A Arginine/agmatine antip 99.5 7E-14 2.4E-18 144.6 15.2 226 212-464 199-440 (445)
6 4djk_A Probable glutamate/gamm 99.3 1.6E-11 5.5E-16 129.3 13.9 62 211-285 208-269 (511)
7 2jln_A MHP1; hydantoin, transp 67.5 1.2E+02 0.0041 31.5 18.5 29 298-326 299-329 (501)
8 2xq2_A Sodium/glucose cotransp 35.0 4.2E+02 0.015 27.8 17.8 32 44-76 263-295 (593)
9 2l2t_A Receptor tyrosine-prote 30.3 35 0.0012 24.0 2.7 15 440-454 26-40 (44)
10 2ks1_B Epidermal growth factor 28.8 42 0.0014 23.6 2.8 15 440-454 27-41 (44)
11 2jwa_A Receptor tyrosine-prote 21.5 79 0.0027 22.2 3.1 16 439-454 26-41 (44)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.96 E-value=1.8e-27 Score=246.88 Aligned_cols=238 Identities=16% Similarity=0.166 Sum_probs=176.7
Q ss_pred ChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHHH
Q psy7925 29 DVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFANR 108 (472)
Q Consensus 29 ~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (472)
++.++..++..++|+|.|+|.+++++||+|||+|++|||+..+..+++++|++.+++.....|++++.+++.+.....++
T Consensus 189 ~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 268 (445)
T 3l1l_A 189 TFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARM 268 (445)
T ss_dssp ----HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999887777777777777
Q ss_pred hccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhHhhhc
Q psy7925 109 IFGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQVT 187 (472)
Q Consensus 109 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~~~~~ 187 (472)
.+++. ...+.+.++++
T Consensus 269 ~~g~~~~~~~~~~~~~~--------------------------------------------------------------- 285 (445)
T 3l1l_A 269 ALGDTAGAIVSFCAAAG--------------------------------------------------------------- 285 (445)
T ss_dssp HHCTTHHHHHHHHHHHH---------------------------------------------------------------
T ss_pred HhhHHHHHHHHHHHHHH---------------------------------------------------------------
Confidence 77765 35555444444
Q ss_pred cCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHH
Q psy7925 188 KMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVL 267 (472)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~ 267 (472)
T Consensus 286 -------------------------------------------------------------------------------- 285 (445)
T 3l1l_A 286 -------------------------------------------------------------------------------- 285 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCch
Q psy7925 268 TNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPT 347 (472)
Q Consensus 268 ~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~ 347 (472)
.+++.++.+++.+|.+++|+|||.+|++|+|+| |+++|+
T Consensus 286 ----------------------------------------~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~-~~~~P~ 324 (445)
T 3l1l_A 286 ----------------------------------------CLGSLGGWTLLAGQTAKAAADDGLFPPIFARVN-KAGTPV 324 (445)
T ss_dssp ----------------------------------------HTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCC-TTCCCH
T ss_pred ----------------------------------------HHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcC-CCCCCH
Confidence 445555555556666666666666666666666 457787
Q ss_pred hHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccchhHHHHHHHHHHHHH
Q psy7925 348 PAVLTIAFLSLLYLMS-------SNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVT 420 (472)
Q Consensus 348 ~al~~~~~i~~ii~l~-------~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~~~~il~iv~~l~li 420 (472)
++++++.+++.++.+. ..++.+.++.++..++.|.+...+.+++|+|+| .+| ++...+.+.++.+.+++++
T Consensus 325 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~-~~r-~~~~~~~~~~~~~~~~~~~ 402 (445)
T 3l1l_A 325 AGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF-GKA-RPAYLAVTTIAFLYCIWAV 402 (445)
T ss_dssp HHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-GGG-CTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-ccc-cchhHHHHHHHHHHHHHHH
Confidence 8777777766655542 246788899999999999999999999998876 222 2333477777777777775
Q ss_pred hhcccccchhHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7925 421 LVPMMASPVETGIGCLMIATSVPVYMVFIAWRNKP 455 (472)
Q Consensus 421 ~~~~~~~~~~~~i~~~v~~lgl~iy~~~~~~~~~~ 455 (472)
+. ..+........+.++|+++|++++|+++++
T Consensus 403 ~~---~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~ 434 (445)
T 3l1l_A 403 VG---SGAKEVMWSFVTLMVITAMYALNYNRLHKN 434 (445)
T ss_dssp HH---SCHHHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred HH---cCHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 43 344455667778888888887665554443
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.95 E-value=4.2e-26 Score=240.90 Aligned_cols=210 Identities=15% Similarity=0.231 Sum_probs=149.9
Q ss_pred HHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHH--Hhc
Q psy7925 33 IALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFAN--RIF 110 (472)
Q Consensus 33 ~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 110 (472)
.+.++...+|+|.|+|.+++++||+|||+|++|||+..+..+++++|++.+++....+|++++..+++....+.. +..
T Consensus 203 ~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (511)
T 4djk_A 203 TLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHV 282 (511)
T ss_dssp TTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHh
Confidence 345677889999999999999999999999999999999999999999999999999998888766554333321 122
Q ss_pred c----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhHhhh
Q psy7925 111 G----PIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQV 186 (472)
Q Consensus 111 ~----~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~~~~ 186 (472)
| +....+.+.++++.+++.|+
T Consensus 283 g~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------- 307 (511)
T 4djk_A 283 APEIEWTVRVISALLLLGVLAEIAS------------------------------------------------------- 307 (511)
T ss_dssp CSSCTTHHHHHHHHHHHHHHHHHHH-------------------------------------------------------
T ss_pred CccchHHHHHHHHHHHHHHHHHHHH-------------------------------------------------------
Confidence 2 22344544444455555444
Q ss_pred ccCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHH
Q psy7925 187 TKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYV 266 (472)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~ 266 (472)
T Consensus 308 -------------------------------------------------------------------------------- 307 (511)
T 4djk_A 308 -------------------------------------------------------------------------------- 307 (511)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCc
Q psy7925 267 LTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTP 346 (472)
Q Consensus 267 ~~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP 346 (472)
.+++.+|++++++|||.+||+|+|+| |+++|
T Consensus 308 ------------------------------------------------~~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P 338 (511)
T 4djk_A 308 ------------------------------------------------WIVGPSRGMYVTAQKNLLPAAFAKMN-KNGVP 338 (511)
T ss_dssp ------------------------------------------------HTTHHHHHTCHHHHGGGCSSSCCCCC-SSSCC
T ss_pred ------------------------------------------------HHHHHHHHHHHHccCCcccHHHHhcC-CCCCc
Confidence 44555555555555555556666666 35677
Q ss_pred hhHHHHHHHHHHH-HHhhh--------hHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccc------hhHHHH
Q psy7925 347 TPAVLTIAFLSLL-YLMSS--------NIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVH------LIFPAA 411 (472)
Q Consensus 347 ~~al~~~~~i~~i-i~l~~--------~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~------~~~~il 411 (472)
.++++++..+..+ .+... .++.+.++.++..++.|.+...+.+++|+|+++.+||||.+ ....++
T Consensus 339 ~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (511)
T 4djk_A 339 VTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVKLVVAIV 418 (511)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCSCCCSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCchHHHHHHHH
Confidence 7776666333222 22222 36778899999999999999999999999888888999988 346667
Q ss_pred HHHHHHHHHhhcccc
Q psy7925 412 YLIASVFVTLVPMMA 426 (472)
Q Consensus 412 ~iv~~l~li~~~~~~ 426 (472)
+++.+++.++...++
T Consensus 419 ~~~~~~~~~~~~~~p 433 (511)
T 4djk_A 419 GLLTSIMAFIVSFLP 433 (511)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHeeeeC
Confidence 777777766655544
No 3
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.94 E-value=7e-26 Score=235.12 Aligned_cols=247 Identities=16% Similarity=0.185 Sum_probs=172.1
Q ss_pred CCccccccCCCCChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhh
Q psy7925 17 ETKYFTFENSTTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVL 96 (472)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 96 (472)
++++++-+..++++.++..++...+|+|.|+|.+++++||+|||+|++|||+..+..+++++|++..++.....|++++.
T Consensus 174 ~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~ 253 (444)
T 3gia_A 174 HPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELI 253 (444)
T ss_dssp CGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred ChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHh
Confidence 45555422233456788999999999999999999999999999999999999999999999999999999999998876
Q ss_pred cc-hhHHHHHHHHhccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhcc
Q psy7925 97 NS-EAVAVTFANRIFGPIA-WTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCE 174 (472)
Q Consensus 97 ~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~ 174 (472)
++ +.+.....++.+++.. ..+.+.++++.
T Consensus 254 ~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~------------------------------------------------- 284 (444)
T 3gia_A 254 KASENALAVAAKPFLGNLGFLLISIGALFSI------------------------------------------------- 284 (444)
T ss_dssp HTGGGHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
T ss_pred cccchhHHHHHHHHhhHHHHHHHHHHHHHHH-------------------------------------------------
Confidence 53 3454455555555432 34444444444
Q ss_pred CCcchhHhHhhhccCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHH
Q psy7925 175 GQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIIL 254 (472)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~ 254 (472)
T Consensus 285 -------------------------------------------------------------------------------- 284 (444)
T 3gia_A 285 -------------------------------------------------------------------------------- 284 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCCh
Q psy7925 255 TTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPE 334 (472)
Q Consensus 255 ~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~ 334 (472)
+++.++.+++.+|++++++|||.+||
T Consensus 285 ------------------------------------------------------~~~~~~~~~~~sR~l~a~a~dg~lP~ 310 (444)
T 3gia_A 285 ------------------------------------------------------SSAMNATIYGGANVAYSLAKDGELPE 310 (444)
T ss_dssp ------------------------------------------------------HHHHHHHHTTTHHHHHHHHHHSSCCS
T ss_pred ------------------------------------------------------HHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 44455555556666666666666666
Q ss_pred hhhcccCCCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccchhHHHHHHH
Q psy7925 335 ILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLI 414 (472)
Q Consensus 335 ~f~kv~~k~~tP~~al~~~~~i~~ii~l~~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~~~~il~iv 414 (472)
+|+|.| | ++|.++++++.+++.+..+..+++.+.++.++..++.|.+...+.+++|+|+|+ + .+.+.++++
T Consensus 311 ~f~~~~-~-~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~-----~~~~~~~~~ 381 (444)
T 3gia_A 311 FFERKV-W-FKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVGG--R-----KEIVIFSFI 381 (444)
T ss_dssp SCCTTS-C-CSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC--C-----HHHHHHHHH
T ss_pred HHhCCC-C-CCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--c-----chHHHHHHH
Confidence 666665 3 458888888888888888777899999999999999999999999998887643 1 155566666
Q ss_pred HHHHHHhhccc---c-cchhHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7925 415 ASVFVTLVPMM---A-SPVETGIGCLMIATSVPVYMVFIAWRNKP 455 (472)
Q Consensus 415 ~~l~li~~~~~---~-~~~~~~i~~~v~~lgl~iy~~~~~~~~~~ 455 (472)
.|+++++...+ . .+...+..........+.|.+++++++|+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (444)
T 3gia_A 382 VVLGVFLLLLYYQWITNRFVFYGIIATFIGVLIFEIIYRKVTKRT 426 (444)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 66554333222 2 22233344444444444555555444443
No 4
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.54 E-value=2.6e-14 Score=148.04 Aligned_cols=61 Identities=21% Similarity=0.325 Sum_probs=55.8
Q ss_pred hhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcch
Q psy7925 212 FALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSE 285 (472)
Q Consensus 212 ~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~ 285 (472)
...++|.|+|+....+||.|+|+|++||++.. +.+.+.++|+..+++....+|.+|+.+++
T Consensus 196 ~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~-------------~~~~~~~~y~~~~~~~~~~~~~~~l~~~~ 256 (444)
T 3gia_A 196 IFFLSYMGFGVITNASEHIENPKKNVPRAIFI-------------SILIVMFVYVGVAISAIGNLPIDELIKAS 256 (444)
T ss_dssp HGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHTTSCHHHHHHTG
T ss_pred HHHHHHHhHHHHHHHHHHccCcccchhHHHHH-------------HHHHHHHHHHHHHHHHHhCCCHHHHhccc
Confidence 35689999999999999999999999999998 88999999999999999999999987643
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.53 E-value=7e-14 Score=144.61 Aligned_cols=226 Identities=11% Similarity=0.048 Sum_probs=121.4
Q ss_pred hhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHH---
Q psy7925 212 FALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATF--- 288 (472)
Q Consensus 212 ~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l--- 288 (472)
..+++|.|+|+....+||.|+|+|++||++.. +.+.+.++|+..+.+....+|.+|+.++.+++
T Consensus 199 ~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~-------------~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~ 265 (445)
T 3l1l_A 199 VTLWSFIGVESASVAAGVVKNPKRNVPIATIG-------------GVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDA 265 (445)
T ss_dssp HHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHH
T ss_pred HHHHHHHhHHHHHHHHHHhcCccccccHHHHH-------------HHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHH
Confidence 46788999999999999999999999999988 88999999999999999999999987766654
Q ss_pred HHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCC---CChhhhcccCCCCCchhHHHHHHHHHHHHHhhhh
Q psy7925 289 ANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQ---MPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSN 365 (472)
Q Consensus 289 ~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~---LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l~~~ 365 (472)
.+...|++...+ ..+. ...+...+..-..++.+|--+ -.+.+.|.=.|.+ +...-....++..++.....
T Consensus 266 ~~~~~g~~~~~~--~~~~----~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~-~~~~P~~a~~~~~~~~~~~~ 338 (445)
T 3l1l_A 266 ARMALGDTAGAI--VSFC----AAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLIIVGILMTIFQ 338 (445)
T ss_dssp HHHHHCTTHHHH--HHHH----HHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCC-TTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHH--HHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcC-CCCCCHHHHHHHHHHHHHHH
Confidence 444455553221 1112 223333344444555554311 0112222221222 33333333333333333222
Q ss_pred HHH--------HHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccc-hhHHHHHHHHHHHHHhhcccccchhHHH-HH
Q psy7925 366 IFA--------LINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVH-LIFPAAYLIASVFVTLVPMMASPVETGI-GC 435 (472)
Q Consensus 366 ~~~--------l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~-~~~~il~iv~~l~li~~~~~~~~~~~~i-~~ 435 (472)
+.. +..+.........+.......-..+. + .++| +.. ...+.+..+..++..+ ..-...+. ..
T Consensus 339 ~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~-r-~~~~-~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 411 (445)
T 3l1l_A 339 LSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLL-G-HGHF-GKARPAYLAVTTIAFLYCIW----AVVGSGAKEVM 411 (445)
T ss_dssp HSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH-H-SSSS-GGGCTTTHHHHHHHHHHHHH----HHHHSCHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-hcCc-ccccchhHHHHHHHHHHHHH----HHHHcCHHHHH
Confidence 211 11233344433444444444444444 3 2455 332 2555555555555532 22222222 22
Q ss_pred HHHHHHHHHHHHHHHHhccCccccccccc
Q psy7925 436 LMIATSVPVYMVFIAWRNKPKVFTKSVGE 464 (472)
Q Consensus 436 ~v~~lgl~iy~~~~~~~~~~~~~~~~~~~ 464 (472)
.....-+....+|..+++++++.++.+.+
T Consensus 412 ~~~~~~~~g~~~y~~~~~~~~~~~~~~~~ 440 (445)
T 3l1l_A 412 WSFVTLMVITAMYALNYNRLHKNPYPLDA 440 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHhhhcccCcccccc
Confidence 23344444445666666666655544443
No 6
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.29 E-value=1.6e-11 Score=129.26 Aligned_cols=62 Identities=11% Similarity=0.130 Sum_probs=56.5
Q ss_pred hhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcch
Q psy7925 211 IFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSE 285 (472)
Q Consensus 211 ~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~ 285 (472)
...+++|.|+|+....+||.|+|+|++||++.. +.+.+.++|+..+++....+|.+|+..++
T Consensus 208 ~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~-------------~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 269 (511)
T 4djk_A 208 VAFILSYMGVEASATHVNEMSNPGRDYPLAMLL-------------LMVAAICLSSVGGLSIAMVIPGNEINLSA 269 (511)
T ss_dssp HHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHH-------------HHHHHHHHHHHHHHHHHTTSCTTSCCSSS
T ss_pred HHHHHHHhhHHHHHHHHHhccCcccchhHHHHH-------------HHHHHHHHHHHHHHHHHeecCHhhccccc
Confidence 345789999999999999999999999999998 89999999999999999999998876554
No 7
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=67.53 E-value=1.2e+02 Score=31.45 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=19.6
Q ss_pred hHHH-HHHHHHhhhchh-hhhhhhhHHHHHh
Q psy7925 298 WTLP-VFVALSTFGGVN-GIILTTSRLFYAG 326 (472)
Q Consensus 298 ~ii~-i~~l~s~~~~~~-~~~~~~SRvl~a~ 326 (472)
.+.. +.++.+.+++.. +..|+++--+..+
T Consensus 299 ~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~ 329 (501)
T 2jln_A 299 AILFQVFVLLATWSTNPAANLLSPAYTLCST 329 (501)
T ss_dssp HHHHHHHHHHHHHTTHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 4455 566667777666 4788887777666
No 8
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=35.02 E-value=4.2e+02 Score=27.85 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=18.8
Q ss_pred hcchh-hhhhhhhhhcCcccchhhHHHHHHHHHH
Q psy7925 44 YNGWN-YLNFIIEELKDPIVNLPRAIYISCTLVT 76 (472)
Q Consensus 44 ~~G~~-~~~~~~~E~k~p~~~~p~a~~~~~~~~~ 76 (472)
|.|.+ ...+-.=+.||+ |+..|+...+.....
T Consensus 263 ~~~~~q~~~qR~laaks~-k~ar~~~~~~~~~~~ 295 (593)
T 2xq2_A 263 YWGFNQYIIQRTLAAKSV-SEAQKGIVFAAFLAL 295 (593)
T ss_dssp HHTTTCSHHHHHHTTSCH-HHHHHHHHHHHHHTT
T ss_pred hhcCChHHHHHhheeCCH-HHHHHHHHHHHHHHH
Confidence 44444 344556678886 456777776655433
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=30.32 E-value=35 Score=24.04 Aligned_cols=15 Identities=7% Similarity=-0.119 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHhcc
Q psy7925 440 TSVPVYMVFIAWRNK 454 (472)
Q Consensus 440 lgl~iy~~~~~~~~~ 454 (472)
+++.++++.+|++++
T Consensus 26 i~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 26 VGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHTTCSS
T ss_pred HHHHHHHHhhhhhhh
Confidence 334344434443333
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=28.81 E-value=42 Score=23.62 Aligned_cols=15 Identities=0% Similarity=-0.077 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHhcc
Q psy7925 440 TSVPVYMVFIAWRNK 454 (472)
Q Consensus 440 lgl~iy~~~~~~~~~ 454 (472)
+++.++++.+|++.+
T Consensus 27 i~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 27 VALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHHHTTTCC
T ss_pred HHHHHHHHhhhhHhh
Confidence 333344434443333
No 11
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=21.49 E-value=79 Score=22.23 Aligned_cols=16 Identities=13% Similarity=0.071 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHhcc
Q psy7925 439 ATSVPVYMVFIAWRNK 454 (472)
Q Consensus 439 ~lgl~iy~~~~~~~~~ 454 (472)
.+++.+.++.+|++.+
T Consensus 26 i~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 26 VLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHCSC
T ss_pred HHHHHHHhheehhhhh
Confidence 3444444444444433
Done!