Query psy7925
Match_columns 472
No_of_seqs 155 out of 1687
Neff 6.2
Searched_HMMs 13730
Date Fri Aug 16 22:23:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7925.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7925hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fftb2 f.17.2.1 (B:27-117) Cy 6.6 43 0.0032 24.8 -0.3 18 438-455 31-48 (91)
2 d2a65a1 f.54.1.1 (A:5-513) Na( 6.3 8.6E+02 0.062 22.2 12.8 18 313-330 349-366 (509)
3 d3dtub2 f.17.2.1 (B:30-129) Ba 6.0 1.9E+02 0.014 21.1 3.3 19 437-455 41-59 (100)
4 d3bzka2 a.60.2.6 (A:564-636) T 5.3 99 0.0072 21.9 1.0 19 45-63 51-69 (73)
5 d1pv7a_ f.38.1.2 (A:) Lactose 4.8 3.2E+02 0.023 22.6 4.6 33 30-64 44-76 (417)
6 d2gxba1 a.4.5.19 (A:140-198) Z 3.5 1.9E+02 0.014 19.8 1.3 13 138-150 35-47 (59)
7 d2h8pc1 f.14.1.1 (C:22-78) Pot 3.1 6.7E+02 0.049 16.4 4.6 27 50-76 25-53 (57)
8 d1q90n_ f.23.27.1 (N:) PetN su 2.7 3.5E+02 0.026 15.6 1.7 20 247-266 8-27 (31)
9 d1v3fa_ a.4.5.31 (A:) Pleckstr 2.3 2.4E+02 0.018 21.4 0.9 20 46-65 4-23 (120)
10 d2uuia1 f.56.1.1 (A:2-147) Leu 2.3 1.2E+03 0.088 17.6 6.2 85 368-456 5-103 (146)
No 1
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=6.64 E-value=43 Score=24.82 Aligned_cols=18 Identities=11% Similarity=-0.029 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhccC
Q psy7925 438 IATSVPVYMVFIAWRNKP 455 (472)
Q Consensus 438 ~~lgl~iy~~~~~~~~~~ 455 (472)
...++.+|+.+++|+++.
T Consensus 31 ~V~~~~~~~~~ryR~~~~ 48 (91)
T d1fftb2 31 PAILMAVGFAWKYRASNK 48 (91)
T ss_dssp HHHHHHHTTTTTTTTSTT
T ss_pred HHHHHHHhhheeeeccCC
Confidence 455666677666665544
No 2
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=6.34 E-value=8.6e+02 Score=22.16 Aligned_cols=18 Identities=6% Similarity=-0.206 Sum_probs=8.8
Q ss_pred hhhhhhhhHHHHHhhhcC
Q psy7925 313 NGIILTTSRLFYAGACEG 330 (472)
Q Consensus 313 ~~~~~~~SRvl~a~a~dg 330 (472)
.+.+.+......+.-+|.
T Consensus 349 l~s~i~~~e~~v~~l~d~ 366 (509)
T d2a65a1 349 LTSSIAIMQPMIAFLEDE 366 (509)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccccchhHHHHHh
Confidence 333444445555555553
No 3
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.00 E-value=1.9e+02 Score=21.12 Aligned_cols=19 Identities=16% Similarity=0.293 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHhccC
Q psy7925 437 MIATSVPVYMVFIAWRNKP 455 (472)
Q Consensus 437 v~~lgl~iy~~~~~~~~~~ 455 (472)
+.+.++..|..+++|+++.
T Consensus 41 ~~V~~~l~~~~~~~r~~~~ 59 (100)
T d3dtub2 41 IFVTLLILYAVWRFHEKRN 59 (100)
T ss_dssp HHHHHHHHHHHHHHBTTTC
T ss_pred HHHHHHHHHHhhhhhccCC
Confidence 3455666677666655543
No 4
>d3bzka2 a.60.2.6 (A:564-636) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=5.27 E-value=99 Score=21.94 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=15.9
Q ss_pred cchhhhhhhhhhhcCcccc
Q psy7925 45 NGWNYLNFIIEELKDPIVN 63 (472)
Q Consensus 45 ~G~~~~~~~~~E~k~p~~~ 63 (472)
.|-++.--+.+|++.|.|.
T Consensus 51 ~g~~TL~DIi~eL~kPgrD 69 (73)
T d3bzka2 51 FGLPTVTDILKELDKPGRD 69 (73)
T ss_dssp SCHHHHHHHHHHHHSTTCC
T ss_pred CCcccHHHHHHHHcCCCCC
Confidence 4667788899999999987
No 5
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=4.83 E-value=3.2e+02 Score=22.59 Aligned_cols=33 Identities=12% Similarity=-0.063 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccch
Q psy7925 30 VTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNL 64 (472)
Q Consensus 30 ~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~ 64 (472)
-.|+..+........... ....+++- .++||.+
T Consensus 44 ~~g~i~s~~~l~~~i~~~-~~G~l~Dr-~grr~~l 76 (417)
T d1pv7a_ 44 DTGIIFAAISLFSLLFQP-LFGLLSDK-LGLRKYL 76 (417)
T ss_dssp HHHHHHHHHHHHHHHTHH-HHHHHHHH-HTTCTHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHH-hCchHHH
Confidence 345555544444443322 23444443 3334443
No 6
>d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.46 E-value=1.9e+02 Score=19.77 Aligned_cols=13 Identities=31% Similarity=0.629 Sum_probs=11.2
Q ss_pred HHHHHHHhcCCCc
Q psy7925 138 RLFYAGACEGQMP 150 (472)
Q Consensus 138 r~~~~~~~~g~~p 150 (472)
|++|++.+.|.+-
T Consensus 35 r~LYsL~~kgkl~ 47 (59)
T d2gxba1 35 RVLYSLAKKGKLQ 47 (59)
T ss_dssp HHHHHHHHTTSEE
T ss_pred HHHHHHHHccchh
Confidence 9999999999654
No 7
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=3.05 E-value=6.7e+02 Score=16.36 Aligned_cols=27 Identities=26% Similarity=0.528 Sum_probs=17.5
Q ss_pred hhhhhhhhcCc--ccchhhHHHHHHHHHH
Q psy7925 50 LNFIIEELKDP--IVNLPRAIYISCTLVT 76 (472)
Q Consensus 50 ~~~~~~E~k~p--~~~~p~a~~~~~~~~~ 76 (472)
+...+|+-.+| -+++|.++..+++..+
T Consensus 25 ~~y~~E~~~~~~~f~sip~a~WWaivT~T 53 (57)
T d2h8pc1 25 LAVLAERGAPGAQLITYPRALWWACETAT 53 (57)
T ss_dssp HHHHHHTTSTTCCCCSHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCccccccchhhhhheeeee
Confidence 44555543333 4799999999887654
No 8
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.73 E-value=3.5e+02 Score=15.63 Aligned_cols=20 Identities=25% Similarity=0.081 Sum_probs=12.1
Q ss_pred cccchhHHHHHHHHHHHHHH
Q psy7925 247 GGVNGIILTTSSVLVTVVYV 266 (472)
Q Consensus 247 ~~~~~~~~~~s~l~v~vlY~ 266 (472)
++|.+++.+.|+....+...
T Consensus 8 ~awaa~~atfsfslslvvwg 27 (31)
T d1q90n_ 8 IGWAATCVMFSFSLSLVVWG 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhheeeEEEEEEe
Confidence 46777777666665555443
No 9
>d1v3fa_ a.4.5.31 (A:) Pleckstrin 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.34 E-value=2.4e+02 Score=21.42 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=14.8
Q ss_pred chhhhhhhhhhhcCcccchh
Q psy7925 46 GWNYLNFIIEELKDPIVNLP 65 (472)
Q Consensus 46 G~~~~~~~~~E~k~p~~~~p 65 (472)
|-+.+..+++|++||+.-+|
T Consensus 4 ~~~~l~~i~~~m~~~~~Gv~ 23 (120)
T d1v3fa_ 4 GSSGLHRIVDKMHDTSTGIR 23 (120)
T ss_dssp SCSHHHHHHHHHTCSSSSCC
T ss_pred cchhHHHHHHHHhCCCCCce
Confidence 55677888899998875554
No 10
>d2uuia1 f.56.1.1 (A:2-147) Leukotriene C4 synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.26 E-value=1.2e+03 Score=17.58 Aligned_cols=85 Identities=15% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhhcCC----------CCCCCcccch----hHHHHHHHHHHHHHhhcccccchhHHH
Q psy7925 368 ALINYVGFATWLSIGVGVLCLPVLRYTQP----------DLPRPIKVHL----IFPAAYLIASVFVTLVPMMASPVETGI 433 (472)
Q Consensus 368 ~l~~l~~~~~l~~yil~~~a~~~l~~~~~----------~~~~~~~~~~----~~~il~iv~~l~li~~~~~~~~~~~~i 433 (472)
.+....+....+.+......+.+.|+|.+ +.+|-.|.+. ..|..-....+.- ....|.....
T Consensus 5 ~l~a~vt~l~~i~~~~~s~~V~~~R~k~kv~~p~~~g~~~fera~RaH~N~~E~~P~fL~ll~l~~----l~~~~~~a~~ 80 (146)
T d2uuia1 5 ALLAAVTLLGVLLQAYFSLQVISARRAFRVSPPLTTGPPEFERVYRAQVNCSEYFPLFLATLWVAG----IFFHEGAAAL 80 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhHhhHHHHHHHHHHHH----hccCHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhccCc
Q psy7925 434 GCLMIATSVPVYMVFIAWRNKPK 456 (472)
Q Consensus 434 ~~~v~~lgl~iy~~~~~~~~~~~ 456 (472)
....+.+|=..|.....+..+++
T Consensus 81 lG~~~~vgRi~ha~gy~~~~~kr 103 (146)
T d2uuia1 81 CGLVYLFARLRYFQGYARSAQLR 103 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHHHHHHHHHHhhhcCcccC
Done!