RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7925
(472 letters)
>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter. [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 501
Score = 204 bits (521), Expect = 3e-60
Identities = 91/210 (43%), Positives = 138/210 (65%), Gaps = 3/210 (1%)
Query: 252 IILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEA---TFANRIFGPIAWTLPVFVALST 308
I + S +VT +YVLTN+A++T LSP E+L S A F R+ G ++W +P V LS
Sbjct: 270 IAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLGVMSWAMPALVGLSC 329
Query: 309 FGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFA 368
FG VNG + ++SRLF+ G EG +P +L+MI V ++TP P++L + L+LL L S +I++
Sbjct: 330 FGSVNGSLFSSSRLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYS 389
Query: 369 LINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASP 428
LIN + FA WL + V L LRY +P++ RPIKV L FP +L++ +F+ ++ + + P
Sbjct: 390 LINLISFANWLFNALAVAGLLWLRYKRPEMNRPIKVPLFFPVFFLLSCLFLIILSLYSPP 449
Query: 429 VETGIGCLMIATSVPVYMVFIAWRNKPKVF 458
V G+G +++ T VPVY + W+NKPK F
Sbjct: 450 VGCGVGFIIMLTGVPVYFFGVWWQNKPKWF 479
Score = 196 bits (501), Expect = 3e-57
Identities = 90/203 (44%), Positives = 124/203 (61%), Gaps = 28/203 (13%)
Query: 23 FENSTTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLT 82
FE + T I L+FYSG++AY GWNYLNF+ EE+K+P LP AI IS +VT +YVLT
Sbjct: 227 FEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLT 286
Query: 83 NVAFYTTLSPAEVLNSEAVAVTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYA 142
N+A++T LSP E+L S AVAV F R+ G ++W +P V LS FG VNG + ++SRLF+
Sbjct: 287 NIAYFTVLSPEELLASLAVAVDFGERLLGVMSWAMPALVGLSCFGSVNGSLFSSSRLFFV 346
Query: 143 GACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQVTKMTPTPAVLTIAFLS 202
G EG +P +L+MI V ++TP P++L + T L+
Sbjct: 347 GGREGHLPSLLSMIHVKRLTPLPSLLIVCT----------------------------LT 378
Query: 203 LLYLMSSNIFALINYVGFATWTF 225
LL L S +I++LIN + FA W F
Sbjct: 379 LLMLFSGDIYSLINLISFANWLF 401
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease.
Length = 425
Score = 57.7 bits (140), Expect = 6e-09
Identities = 49/241 (20%), Positives = 91/241 (37%), Gaps = 20/241 (8%)
Query: 27 TTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAF 86
+ + L L+++ G+ + EE+K ++P+A++I +V V+Y+L N+ F
Sbjct: 184 PSGWPGVFLGLLIVLWSFGGFESAANVSEEVKKR--DVPKALFIGLLIVGVLYLLVNILF 241
Query: 87 YTTLSPAEVLNSEA---VAVTFANRIFGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYA 142
+ E+ VA + GP A + + +ALS G VN I+ +SR+ A
Sbjct: 242 LGVVPDDEIAKLSNLPSVAALLFEAVGGPWGAIIVVILLALSLLGAVNTAIVASSRVLEA 301
Query: 143 GACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQVTKMTPTPAVLTIAFLS 202
A +G +P+ + +P A++ IL++I + + A L
Sbjct: 302 LARDGVLPKFFAKVNKFG-SPVRALILTA--------ILSLILLLLFLLSGAAYN--ALL 350
Query: 203 LLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPV---FVALSTFGGVNGIILTTSSV 259
L + + L+ +G I PV + F V
Sbjct: 351 SLSAVGYLLVYLLLIIGLLILRKKRPDLPRIKGRWPVAILAILFILFLLVALFFPPGGPS 410
Query: 260 L 260
Sbjct: 411 T 411
Score = 45.8 bits (109), Expect = 4e-05
Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 15/179 (8%)
Query: 259 VLVTVVYVLTNVAFYTTLSPAEVLNSE------ATFANRIFGPI-AWTLPVFVALSTFGG 311
++V V+Y+L N+ F + E+ A + GP A + + +ALS G
Sbjct: 228 LIVGVLYLLVNILFLGVVPDDEIAKLSNLPSVAALLFEAVGGPWGAIIVVILLALSLLGA 287
Query: 312 VNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLL-----YLMSSNI 366
VN I+ +SR+ A A +G +P+ + +P A++ A LSL+ L +
Sbjct: 288 VNTAIVASSRVLEALARDGVLPKFFAKVNKFG-SPVRALILTAILSLILLLLFLLSGAAY 346
Query: 367 FALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHL--IFPAAYLIASVFVTLVP 423
AL++ L + ++ L +LR +PDLPR I +++ + P
Sbjct: 347 NALLSLSAVGYLLVYLLLIIGLLILRKKRPDLPRIKGRWPVAILAILFILFLLVALFFP 405
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and
metabolism].
Length = 466
Score = 52.9 bits (127), Expect = 2e-07
Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 5/157 (3%)
Query: 20 YFTFENSTTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVY 79
+ F I + FA+ G+ + + EE+K+P +PRAI +S +V ++Y
Sbjct: 190 FAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILY 249
Query: 80 VLTNVAFYTTLSPAEVL---NSEAVAVTFANRIFGPIAWTLPVFVALSTFGGVNGIILTT 136
+L + L ++ S +A+ A + + LS FG + IL
Sbjct: 250 ILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAV 309
Query: 137 SRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTC 173
SR+ YA A +G +P+ +V TP + I+T
Sbjct: 310 SRVLYAMARDGLLPKFFA--KVNPKGRTPVIALILTG 344
Score = 48.2 bits (115), Expect = 5e-06
Identities = 60/294 (20%), Positives = 107/294 (36%), Gaps = 29/294 (9%)
Query: 198 IAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGI----- 252
+ + LL + +FA G F + +A F G I
Sbjct: 166 LKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAE 225
Query: 253 -----------ILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSE-----ATFANRIFGPI 296
+ S ++V ++Y+L + L ++ S A A G
Sbjct: 226 EVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNW 285
Query: 297 -AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPA-----V 350
A + + LS FG + IL SR+ YA A +G +P+ + TP A +
Sbjct: 286 GAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGI 345
Query: 351 LTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPA 410
+++ L L L S AL++ A ++ + L L VLR +PDL RP ++ L
Sbjct: 346 ISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDLKRPFRLPLAPLI 405
Query: 411 AYL--IASVFVTLVPMMASPVETGIGCLMIATSVPVYMVFIAWRNKPKVFTKSV 462
L +A + + + +G ++IA + +Y++ +
Sbjct: 406 PILGIVAVLLLLYALYASGLPPLLLGVILIAGGIIIYLLVYLGLGRLLSAILIA 459
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter. [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 429
Score = 49.4 bits (118), Expect = 2e-06
Identities = 40/203 (19%), Positives = 76/203 (37%), Gaps = 9/203 (4%)
Query: 251 GIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSE-----ATFANRIFGPIAWTLPVFVA 305
IIL S ++VT++YVL A P L + G L
Sbjct: 231 AIIL--SLIVVTLLYVLVA-AVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAV 287
Query: 306 LSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSN 365
S + I TSR+ +A + +G +P L+ + TP +++ + + L
Sbjct: 288 FSIASVMLAGIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVP 347
Query: 366 IFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMM 425
+ L T ++ + + +LR +PD+ R + L+ L+ S + L+ +
Sbjct: 348 LEGLAELTSIGTLIAFAAVNVAVIILRRRRPDIQRAFRCPLVPVLPVLVVSYCIYLL-LN 406
Query: 426 ASPVETGIGCLMIATSVPVYMVF 448
P T + + Y ++
Sbjct: 407 LGPGTTVWFLVWMLLGSVFYFIY 429
Score = 48.6 bits (116), Expect = 4e-06
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
Query: 42 FAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAV 101
FA+ G+ ++ EE+K+P ++P+AI +S +VT++YVL A P L
Sbjct: 206 FAFIGFEAISTAAEEVKNPERDIPKAIILSLIVVTLLYVLVA-AVILGAVPWRQLAGSTA 264
Query: 102 AVTFA--NRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVT 159
++ + G L S + I TSR+ +A + +G +P L+ +V
Sbjct: 265 PLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGSLS--KVH 322
Query: 160 KMTPTPAVLTIV 171
T TP + I+
Sbjct: 323 PKTGTPHMSIII 334
>gnl|CDD|233178 TIGR00907, 2A0304, amino acid permease (GABA permease). [Transport
and binding proteins, Amino acids, peptides and amines].
Length = 482
Score = 44.7 bits (106), Expect = 7e-05
Identities = 41/176 (23%), Positives = 69/176 (39%), Gaps = 19/176 (10%)
Query: 15 FGETKYF--TFENSTTDVTSIALSFYSGL----FAYNGWNYLNFIIEELKDPIVNLPRAI 68
F + K+ F NST +F GL ++ G++ + EE+++P V PRAI
Sbjct: 195 FNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEIENPEVVGPRAI 254
Query: 69 YISCTLVTVV--YVLTNVAFYTTLSPAEVLNSEA---VAVTFAN---RIFGPIAWTLPVF 120
I + +V + V F++ +++S +A F N G I +
Sbjct: 255 -IGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLIL 313
Query: 121 VALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTP--AVLTIVTCE 174
V +F + SR+ YA + +G +P +V T P AV
Sbjct: 314 VT--SFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWI 367
Score = 32.8 bits (75), Expect = 0.45
Identities = 32/158 (20%), Positives = 56/158 (35%), Gaps = 21/158 (13%)
Query: 248 GVNGIILTTS-SVLVTVVYVLTNVAFYTTLSPAEVLNSEATFA---------NRIFGPIA 297
G II + ++ + + V F++ +++S G I
Sbjct: 250 GPRAIIGAVAIGIVTGFCFNI--VLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIF 307
Query: 298 WTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTP--AVLTIAF 355
+ V +F + SR+ YA + +G +P +V T P AV A
Sbjct: 308 LLCLILVT--SFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAV 365
Query: 356 LS----LLYLMSSNIF-ALINYVGFATWLSIGVGVLCL 388
LL L SS F A+ + A +S + ++C
Sbjct: 366 WIILIGLLGLGSSTAFQAIFSVCTVALDVSYVIPIICK 403
>gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease. The three genes used as
the seed for this model (from Burkholderia pseudomallei,
Pseudomonas aeruginosa and Clostridium acetobutylicum
are all adjacent to genes for the catabolism of
ethanolamine. Most if not all of the hits to this model
have a similar arrangement of genes. This group is a
member of the Amino Acid-Polyamine-Organocation (APC)
Superfamily [Transport and binding proteins, Amino
acids, peptides and amines].
Length = 442
Score = 42.9 bits (101), Expect = 2e-04
Identities = 35/161 (21%), Positives = 63/161 (39%), Gaps = 7/161 (4%)
Query: 290 NRIFGPIAWTLPVFVALSTFGGV---NGIILTTSRLFYAGACEGQMPEILTMIQVTKMTP 346
I+G W + FG + +GII SR +A + G +PE L+ + K P
Sbjct: 267 ESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQIFALSRAGYLPESLSKVN-RKKAP 325
Query: 347 TPAVLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKV-- 404
A++ + ++ +I F +S + + LR +PD+ RP +
Sbjct: 326 VLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRPDMERPYRTPG 385
Query: 405 HLIFPAAYLIASVFVTLVPMMASPVETGIGCLMIATSVPVY 445
++ P L+ + V LV +G + I + Y
Sbjct: 386 GILTPGVALVLAC-VALVTGFYVDPRVVVGAVAIFVVLIGY 425
Score = 32.9 bits (75), Expect = 0.35
Identities = 42/196 (21%), Positives = 66/196 (33%), Gaps = 41/196 (20%)
Query: 13 NIFGETKYFTFENSTTDVTSIALSFYSGL-----------------------FAYNG-WN 48
NI G + E T V IAL + G AY G +
Sbjct: 136 NILGVGEAAKLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFA 195
Query: 49 YLNFII-------------EELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEV 95
+ F I EE K+P ++PR + + + + V E+
Sbjct: 196 AIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAILTLLALAAGILVVGPGAADAKEL 255
Query: 96 LNSEAVAVTFANRIFGPIAWTLPVFVALSTFGGV---NGIILTTSRLFYAGACEGQMPEI 152
+ S I+G W + FG + +GII SR +A + G +PE
Sbjct: 256 MGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQIFALSRAGYLPES 315
Query: 153 LTMIQVTKMTPTPAVL 168
L+ + K P A++
Sbjct: 316 LSKVN-RKKAPVLAIV 330
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease.
Length = 473
Score = 38.1 bits (89), Expect = 0.010
Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 7/138 (5%)
Query: 24 ENSTTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTN 83
T + F FA+ G + E+K+P +P+AI + +T+ Y+L+
Sbjct: 188 SPGTGSFANFFSVFVIAFFAFTGIELVGNAAGEVKNPRKAIPKAILQAVWRITIFYILSL 247
Query: 84 VAFYTTLSPAEVLNSEAVAVT-----FANRIFGPIAWT--LPVFVALSTFGGVNGIILTT 136
+A + + A + G + + + N + +
Sbjct: 248 LAIGLLVPWNDPGLLADSASAASPFVIFFKSLGISGLAPLINAVILTAALSAANSSLYSG 307
Query: 137 SRLFYAGACEGQMPEILT 154
SR+ YA A +G P+ L
Sbjct: 308 SRVLYALARDGLAPKFLK 325
Score = 30.4 bits (69), Expect = 2.4
Identities = 33/189 (17%), Positives = 59/189 (31%), Gaps = 15/189 (7%)
Query: 252 IILTTSSVLVTVVYVLTNVAFYTTLSPAEVLN-SEATFANRIFGPIAWT--LPVFVALST 308
+T +L + L L S + G + + +
Sbjct: 237 WRITIFYILSLLAIGLLVPWNDPGLLADSASAASPFVIFFKSLGISGLAPLINAVILTAA 296
Query: 309 FGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLT---IAFLSLLYLMSSN 365
N + + SR+ YA A +G P+ L + P A+L I+ L++L +
Sbjct: 297 LSAANSSLYSGSRVLYALARDGLAPKFLKKVD-KSGVPLRAILLSTAISLLAVLLASLNP 355
Query: 366 IFA---LINYVGFATWLSIGVGVLCLPVLR---YTQPDLPR--PIKVHLIFPAAYLIASV 417
L+ G + G+ L R Q P K L L +
Sbjct: 356 AIVFNFLLAISGLIGLIVWGLISLSHLRFRKAFKYQGRSIDELPFKACLGPFGVILGLAA 415
Query: 418 FVTLVPMMA 426
+T++ + A
Sbjct: 416 LITILLIQA 424
>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional.
Length = 445
Score = 36.8 bits (85), Expect = 0.020
Identities = 38/156 (24%), Positives = 66/156 (42%), Gaps = 16/156 (10%)
Query: 3 YVVQIMIGVANIFGETKYFTFENSTTDVTSIALSFYSGL-------FAYNGWNYLNFIIE 55
+ + I +G+ E F TT SF + L ++Y G + ++
Sbjct: 164 FTIVIGLGIFWFKAEN----FAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTG 219
Query: 56 ELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFANRIFGPIAW 115
E+K+P +PRA+ SC LV V+Y L + + ++ NSE I +
Sbjct: 220 EIKNPGKTMPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPA-LGS 278
Query: 116 TLPVFVALST----FGGVNGIILTTSRLFYAGACEG 147
T +FVA++ G ++ ++ RL YA A +
Sbjct: 279 TAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDN 314
>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease.
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 557
Score = 35.2 bits (81), Expect = 0.087
Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 8/152 (5%)
Query: 252 IILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVF-VALSTFG 310
I + TS ++ V Y L + A T + P +L+ +A F F + W + VA+
Sbjct: 266 IGIVTSLLVCFVAYFLMSAAL-TLMMPYYLLDPDAPFPV-AFEYVGWGPAKYIVAVGALC 323
Query: 311 GVNGIILTTS----RLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNI 366
G++ +L R+ YA A +G + + L I TP A + ++ L ++
Sbjct: 324 GMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDL 383
Query: 367 FALINYVGFATWLSIGVGVLCLPVLRYTQPDL 398
AL++ + T L+ + C+ +LRY QP L
Sbjct: 384 KALVDLLSIGTLLAYSLVAACVLILRY-QPGL 414
Score = 34.0 bits (78), Expect = 0.19
Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 12/135 (8%)
Query: 42 FAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEA- 100
FA+ G++ + EE+K+P +P I S + V Y L + A T + P +L+ +A
Sbjct: 242 FAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAAL-TLMMPYYLLDPDAP 300
Query: 101 VAVTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTS----RLFYAGACEGQMPEILTMI 156
V F +GP + VA+ G++ +L R+ YA A +G + + L
Sbjct: 301 FPVAFEYVGWGPAKYI----VAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLA-- 354
Query: 157 QVTKMTPTPAVLTIV 171
Q+ T TP T+V
Sbjct: 355 QINSKTKTPINATVV 369
>gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and
metabolism].
Length = 541
Score = 34.9 bits (81), Expect = 0.091
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 12/81 (14%)
Query: 313 NGIILTTSRLFYAGACEGQMPEILTMIQVTKM-TPTPAVLTIAFLSLLYLMSSN------ 365
N + +SR+ Y+ A +G+ P+I +V + P A+L LL ++S+
Sbjct: 342 NSGLYASSRMLYSLAKQGKAPKIFA--KVDRRGVPLVALLVTLLFGLLAFLNSSFKETTV 399
Query: 366 ---IFALINYVGFATWLSIGV 383
+ + GF W SI +
Sbjct: 400 FNWLLNISGLSGFIAWGSICL 420
>gnl|CDD|236830 PRK11049, PRK11049, D-alanine/D-serine/glycine permease;
Provisional.
Length = 469
Score = 33.9 bits (78), Expect = 0.16
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Query: 37 FYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVL 96
F +FA+ G + E KDP +LPRAI + + YV + + + V+
Sbjct: 217 FQIAVFAFVGIELVGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVV 276
Query: 97 NSEAVAVTFANRIFGPIAWTLPVFVAL-STFGGVNGIILTTSRLFYAGACEGQMP 150
++ V + P A ++ FV L S N + +TSR+ + A EG P
Sbjct: 277 PDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAP 331
>gnl|CDD|236823 PRK11021, PRK11021, putative transporter; Provisional.
Length = 410
Score = 33.7 bits (78), Expect = 0.18
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Query: 55 EELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFANRIFGPIA 114
E K+P + PRA+ I L +VY V + + + A ++FG A
Sbjct: 201 SEFKNPERDFPRALMIGLLLAGLVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYA 260
Query: 115 -WTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMP 150
W + V L+ F VN + +RL ++ A EG+ P
Sbjct: 261 LWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPP 297
>gnl|CDD|182566 PRK10580, proY, putative proline-specific permease; Provisional.
Length = 457
Score = 32.9 bits (75), Expect = 0.37
Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 7/157 (4%)
Query: 30 VTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTT 89
+ +S +FAY G + E KDP ++PRAI + V YV T +
Sbjct: 198 WLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSI 257
Query: 90 LSPAEV-LNSEAVAVTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQ 148
+V N +TF + A L V ++ +N + R+ + A +G
Sbjct: 258 YPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGS 317
Query: 149 MPEILTMIQ------VTKMTPTPAVLTIVTCEGQMPE 179
P+I + VT + T A+L V MPE
Sbjct: 318 APKIFSKTSRRGIPWVTVLVMTTALLFAVYLNYIMPE 354
>gnl|CDD|214431 MTH00142, COX1, cytochrome c oxidase subunit I; Provisional.
Length = 511
Score = 31.6 bits (72), Expect = 0.87
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 232 PIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFANR 291
P+ W L F+ L T GG+ GI+L SS+ V + + +Y VL+ A FA
Sbjct: 335 PMLWALG-FIFLFTVGGLTGIVLANSSLDVVL-----HDTYYVVAHFHYVLSMGAVFA-- 386
Query: 292 IFGPIAWTLPVFVALS 307
+F P+F L+
Sbjct: 387 LFAGFIHWFPLFTGLT 402
>gnl|CDD|177123 MTH00048, COX1, cytochrome c oxidase subunit I; Provisional.
Length = 511
Score = 31.6 bits (72), Expect = 0.89
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 107 NRIFGPIAWTLPVFVALSTFGGVNGIILTTSRL 139
R P+ W + F+ L T GGV GI+L+ S L
Sbjct: 330 VRKSDPVVWWVVSFIVLFTIGGVTGIVLSASVL 362
Score = 31.6 bits (72), Expect = 0.89
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 290 NRIFGPIAWTLPVFVALSTFGGVNGIILTTSRL 322
R P+ W + F+ L T GGV GI+L+ S L
Sbjct: 330 VRKSDPVVWWVVSFIVLFTIGGVTGIVLSASVL 362
Score = 31.6 bits (72), Expect = 0.90
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 227 NRIFGPIAWTLPVFVALSTFGGVNGIILTTSSV 259
R P+ W + F+ L T GGV GI+L+ S +
Sbjct: 330 VRKSDPVVWWVVSFIVLFTIGGVTGIVLSASVL 362
>gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases
[Amino acid transport and metabolism].
Length = 462
Score = 30.7 bits (70), Expect = 2.1
Identities = 39/181 (21%), Positives = 68/181 (37%), Gaps = 22/181 (12%)
Query: 295 PIAWTLPVFVAL-STFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTI 353
P A + FV L + +N + +TSR+ Y+ A +G P+ + + P A+L
Sbjct: 284 PFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPKAFAKL-SKRGVPVNAILLS 342
Query: 354 AFLSLL-----YLMSSNIF----ALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKV 404
A + LL Y++ +F + WL I +L LR +P + +K
Sbjct: 343 AVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMI---LLSQLKLRKAKPAEGKKLKF 399
Query: 405 HLIFP--AAYL----IASVFVTLV--PMMASPVETGIGCLMIATSVPVYMVFIAWRNKPK 456
+ YL +A V V ++ P + G L++ + R K
Sbjct: 400 KMPLYPFTNYLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVKRKKKARKARK 459
Query: 457 V 457
Sbjct: 460 A 460
>gnl|CDD|233181 TIGR00913, 2A0310, amino acid permease (yeast). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 478
Score = 30.3 bits (69), Expect = 2.7
Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 32/144 (22%)
Query: 31 TSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTL 90
+ F + F++ G + E +P ++PRA + + V Y+LT + L
Sbjct: 197 KGVCSVFVTAAFSFGGTELVALTAGEAANPRKSIPRAAKRTFWRILVFYILT-LFLIGFL 255
Query: 91 SP---AEVLNSEAVAVTFANRIFGPIAWTLPVFVALSTFGG------VNGIILTT----- 136
P +L+S + + + A+ P +A+ G N +IL +
Sbjct: 256 VPYNDPRLLSSSSSSDSAAS----------PFVIAIQNHGIKVLPHIFNAVILISVLSAA 305
Query: 137 -------SRLFYAGACEGQMPEIL 153
SR YA A +G P+I
Sbjct: 306 NSSLYASSRTLYALAHQGLAPKIF 329
Score = 28.4 bits (64), Expect = 9.0
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 15/103 (14%)
Query: 302 VFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYL 361
+ +S N + +SR YA A +G P+I + + P AV+ + LL
Sbjct: 295 AVILISVLSAANSSLYASSRTLYALAHQGLAPKIFAYVD-RRGVPYVAVIVSSLFGLLAF 353
Query: 362 MSSN---------IFALINYVGFATWLSIGVGVLCLPVLRYTQ 395
++ + + + GF TW+ I CL +R+ +
Sbjct: 354 LAVSKKEAEVFTWLLNISGLSGFFTWMCI-----CLSHIRFRK 391
>gnl|CDD|236667 PRK10249, PRK10249, phenylalanine transporter; Provisional.
Length = 458
Score = 30.0 bits (67), Expect = 2.9
Identities = 26/123 (21%), Positives = 53/123 (43%), Gaps = 1/123 (0%)
Query: 35 LSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAE 94
LS +F++ G + E +DP ++P+A+ + + Y+ + V E
Sbjct: 213 LSLAVIMFSFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVE 272
Query: 95 VL-NSEAVAVTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEIL 153
V NS + F N +A L + +++ N + + SR+ + + +G P+ L
Sbjct: 273 VKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFL 332
Query: 154 TMI 156
T +
Sbjct: 333 TRV 335
>gnl|CDD|217605 pfam03542, Tuberin, Tuberin. Tuberous sclerosis complex (TSC) is
an autosomal dominant disorder and is characterized by
the presence of hamartomas in many organs, such as
brain, skin, heart, lung, and kidney. It is caused by
mutation either TSC1 or TSC2 tumour suppressor gene. The
TSC2 gene codes for tuberin and interacts with hamartin
pfam04388, containing two coiled-coil regions, which
have been shown to mediate binding to tuberin. These two
proteins function within the same pathway(s) regulating
cell cycle, cell growth, adhesion, and vesicular
trafficking.
Length = 356
Score = 29.8 bits (67), Expect = 3.1
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 10/54 (18%)
Query: 168 LTIVTCEGQMPEILT------MIQVTKMTPTPAVLT--IAFLSLLYLMSSNIFA 213
LTI+ E MP++L +++++KM+ T + + FLS L + +++A
Sbjct: 259 LTILLLE--MPDVLMSKLPDLLVELSKMSATVLMALPVLEFLSTLIHLPKHLYA 310
Score = 29.4 bits (66), Expect = 4.0
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 19/100 (19%)
Query: 328 CEGQMPEILT------MIQVTKMTPTPAVLT--IAFLSLLYLMSSNIFALINYVGFATWL 379
+MP++L +++++KM+ T + + FLS L + +++A + +
Sbjct: 262 LLLEMPDVLMSKLPDLLVELSKMSATVLMALPVLEFLSTLIHLPKHLYANFTETQYMSVF 321
Query: 380 SIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFV 419
+I LP YT P V L A ++IA+ F+
Sbjct: 322 AI-----SLP---YTNPARYDHYTVSL---AHHVIAAWFI 350
>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 835
Score = 30.0 bits (68), Expect = 3.3
Identities = 30/182 (16%), Positives = 57/182 (31%), Gaps = 25/182 (13%)
Query: 223 WTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVT---VVYVLTNVAFYTTLSPA 279
+ N + +AW L F + ++ + + V A L P
Sbjct: 298 LSILNALPLDLAWLALGLFLLLAFFFIARLLGAALTPTAPSWRLFMVCDRFA--HFLMPR 355
Query: 280 EVLNSEATFANRIFGPIAWTL--PVFVALSTFGGVNGII--------LTTSRLFYAGACE 329
E + R G I L P+ + ++ G + +I L L A +
Sbjct: 356 EQAMALRRGLVRSLGAINPLLGAPLVLTVADDGLASDVIGQLGIIAALLAPALLVARLKD 415
Query: 330 GQMPEILTMIQVTKMTPTPAVL----------TIAFLSLLYLMSSNIFALINYVGFATWL 379
++ +T ++ P L T FL+L +++ I + L
Sbjct: 416 AAWRAYPRLLLITVLSAAPLALIVAALTGYLYTALFLALRLVVTVAILFTWYVLYILRGL 475
Query: 380 SI 381
S+
Sbjct: 476 SV 477
>gnl|CDD|237929 PRK15238, PRK15238, inner membrane transporter YjeM; Provisional.
Length = 496
Score = 29.9 bits (68), Expect = 3.6
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 41 LFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVL 81
+FAY G + ++++ ++P N P+ I I+ ++++ Y L
Sbjct: 221 IFAYGGIEAVGGLVDKTENPEKNFPKGIIIAAIVISIGYSL 261
>gnl|CDD|204801 pfam11978, MVP_shoulder, Shoulder domain. This domain is found in
the Major Vault Protein and has been called the shoulder
domain. This family includes two bacterial proteins.
This suggests that some bacteria may possess vault
particles.
Length = 118
Score = 28.0 bits (63), Expect = 4.3
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 208 SSNIFALINYVGFATWTFANRIFGPIA 234
+ F++ ++VG A A+RI G +A
Sbjct: 39 AQKWFSVPDFVGDACKAIASRIRGAVA 65
>gnl|CDD|177222 MTH00167, COX1, cytochrome c oxidase subunit I; Provisional.
Length = 512
Score = 29.3 bits (66), Expect = 5.1
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 18/85 (21%)
Query: 231 GPIAWTLPV-----FVALSTFGGVNGIILTTSS---VLVTVVYVLTNVAFYTTLSPAEVL 282
G I W P+ F+ L T GG+ GI+L SS VL YV+ + + VL
Sbjct: 330 GKIKWETPMLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHY--------VL 381
Query: 283 NSEATFANRIFGPIAWTLPVFVALS 307
+ A FA I P+F L+
Sbjct: 382 SMGAVFA--IMAGFTHWFPLFTGLT 404
>gnl|CDD|182613 PRK10644, PRK10644, arginine:agmatin antiporter; Provisional.
Length = 445
Score = 29.0 bits (65), Expect = 5.6
Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 9/139 (6%)
Query: 57 LKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFANRIFGPIAWT 116
+K+P N+P A + V YVL++ A + A + S + A G A
Sbjct: 217 VKNPKRNVPIATIGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGA 276
Query: 117 LPVF-VALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEG 175
+ F A G + G L + A A +G P I + TP +L +
Sbjct: 277 IVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLLIVGV--- 332
Query: 176 QMPEILTMIQVTKMTPTPA 194
++T+ Q++ ++P +
Sbjct: 333 ----LMTIFQLSSISPNAS 347
>gnl|CDD|212488 cd11677, Gemin7, Gemin 7. Gemins 7, together with the survival
motor neuron (SMN) protein, other Gemins, and
Unr-interacting protein (UNRIP) form the SMN complex,
which plays an important role in the Sm core assembly
reaction, by binding directly to the Sm proteins, as
well as UsnRNAs. Gemin 7 forms a heterodimer with Gemin
6, which serve as a surrogate for the SmB-SmD3 dimer
during the formation of the heptameric Sm ring.
Length = 77
Score = 26.8 bits (60), Expect = 5.6
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 48 NYLNFIIEELKDPIVNLPRAIY-----ISCTL 74
+ NF + LK P+ P A+ IS T
Sbjct: 45 DVENFQVSNLKTPLGIQPEALLRTSDIISITF 76
>gnl|CDD|217145 pfam02616, ScpA_ScpB, ScpA/B protein. ScpA and ScpB participate in
chromosomal partition during cell division. It may act
via the formation of a condensin-like complex containing
smc that pull DNA away from mid-cell into both cell
halves. These proteins are part of the Kleisin
superfamily.
Length = 177
Score = 28.1 bits (63), Expect = 7.5
Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
Query: 147 GQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQV--------TKMTPTPAVLTI 198
+++ + ++ V+ E + E+L + V K P+ L
Sbjct: 88 HAFNKLVKRKRKNRLRKKNETELEVSVEEVLEELLAFLGVRLKEVLTKLKKFPSKKDLVG 147
Query: 199 AFLSLLYLMSSNIFALI 215
AF++LL L ++ +
Sbjct: 148 AFVALLELANNQKVEIE 164
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein,
HlyD family. Type I secretion is an ABC transport
process that exports proteins, without cleavage of any
signal sequence, from the cytosol to extracellular
medium across both inner and outer membranes. The
secretion signal is found in the C-terminus of the
transported protein. This model represents the adaptor
protein between the ATP-binding cassette (ABC) protein
of the inner membrane and the outer membrane protein,
and is called the membrane fusion protein. This model
selects a subfamily closely related to HlyD; it is
defined narrowly and excludes, for example, colicin V
secretion protein CvaA and multidrug efflux proteins
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 423
Score = 28.8 bits (65), Expect = 7.6
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 17/86 (19%)
Query: 285 EATFANRIFGPIAWTLPVFVALSTF-----GGVNGIILTTS----------RLFYAGACE 329
EA + + G + P + S F G +NG + + S +Y
Sbjct: 313 EAKLSPKDIGFVHVGQPAEIKFSAFPYRRYGILNGKVKSISPDTFTDERGGGPYYRVRIS 372
Query: 330 GQMPEILTMIQVTKMTPTPAVLTIAF 355
+ I + +P + A
Sbjct: 373 IDQNTL--GIGPKGLELSPGMPVTAD 396
>gnl|CDD|214774 smart00682, G2F, G2 nidogen domain and fibulin.
Length = 227
Score = 28.2 bits (63), Expect = 8.6
Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 29/130 (22%)
Query: 87 YTTLSPAEVLNSEAVAVTFANRIFGPIAWTLPVFVALSTFGGVNGIILT------TSRLF 140
YT +S + + A+ I G I W A G VNG LT + +
Sbjct: 42 YTAISN--IPSPLGAALRPLVPIGGTIGWLF----AKEQGGAVNGFQLTGGVFTRETEVT 95
Query: 141 YAGACEGQMPEILTMIQVTKMTPTPAVLTIVT-CEGQMPEILTMIQVTKMTPTPAVLTIA 199
+AG EIL + Q L + G++P++ A +TI
Sbjct: 96 FAG------GEILRIKQTFSGLDEHGYLKVKIEVSGRVPQV----------AAGAEVTIP 139
Query: 200 FLSLLYLMSS 209
+ Y +
Sbjct: 140 DYTEEYTYTG 149
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.139 0.421
Gapped
Lambda K H
0.267 0.0746 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,303,417
Number of extensions: 2425429
Number of successful extensions: 3548
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3472
Number of HSP's successfully gapped: 242
Length of query: 472
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 372
Effective length of database: 6,502,202
Effective search space: 2418819144
Effective search space used: 2418819144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (27.2 bits)