RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7925
(472 letters)
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound,
amino-acid transport, cell inner membrane, cell
membrane, membrane; HET: ARG BNG; 3.00A {Escherichia
coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A
3ncy_A
Length = 445
Score = 75.5 bits (186), Expect = 8e-15
Identities = 41/264 (15%), Positives = 79/264 (29%), Gaps = 21/264 (7%)
Query: 20 YFTFENSTTDVTSIALSFYSG--------LFAYNGWNYLNFIIEELKDPIVNLPRAIYIS 71
+F E L + L+++ G + +K+P N+P A
Sbjct: 172 WFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGG 231
Query: 72 CTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFANRIFGPI-AWTLPVFVALSTFGGVN 130
+ V YVL+ A + A + S + A G + A G +
Sbjct: 232 VLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLG 291
Query: 131 GIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQVTKMT 190
G L + A A +G P I + TP I+ ++ + +++
Sbjct: 292 GWTLLAGQTAKAAADDGLFPPIFARVNKAG---TPVAGLIIVG--------ILMTIFQLS 340
Query: 191 PTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVN 250
T F + + Y A + FG ++ +
Sbjct: 341 SISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTTIAFLYCIW 400
Query: 251 GII-LTTSSVLVTVVYVLTNVAFY 273
++ V+ + V ++ A Y
Sbjct: 401 AVVGSGAKEVMWSFVTLMVITAMY 424
Score = 72.0 bits (177), Expect = 1e-13
Identities = 35/219 (15%), Positives = 66/219 (30%), Gaps = 20/219 (9%)
Query: 251 GIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFA---NRIFGPI-AWTLPVFVAL 306
I ++ V YVL+ A + A + S + F G + A
Sbjct: 227 ATIGGV--LIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAA 284
Query: 307 STFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSS-- 364
G + G L + A A +G P I + TP ++ + L ++ +SS
Sbjct: 285 GCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAG-TPVAGLIIVGILMTIFQLSSIS 343
Query: 365 -----NIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFV 419
+ + T + L +L + RP + A IA ++
Sbjct: 344 PNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARP-----AYLAVTTIAFLYC 398
Query: 420 TLVPMMASPVETGIGCLMIATSVPVYMVFIAWRNKPKVF 458
+ + E + + +Y R +
Sbjct: 399 IWAVVGSGAKEVMWSFVTLMVITAMY-ALNYNRLHKNPY 436
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell
membrane, membrane, transmembrane, transport protein;
HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB:
3gi9_C* 3gi8_C
Length = 444
Score = 62.7 bits (153), Expect = 8e-11
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 4/132 (3%)
Query: 42 FAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAV 101
+Y G+ + E +++P N+PRAI+IS +V VYV ++ L E++ +
Sbjct: 199 LSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASEN 258
Query: 102 AVTFANR-IFGPIAWTLPVFVAL-STFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVT 159
A+ A + G + + L AL S +N I + + Y+ A +G++PE +
Sbjct: 259 ALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFE--RKV 316
Query: 160 KMTPTPAVLTIV 171
T +
Sbjct: 317 WFKSTEGLYITS 328
Score = 51.5 bits (124), Expect = 3e-07
Identities = 34/217 (15%), Positives = 76/217 (35%), Gaps = 14/217 (6%)
Query: 251 GIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSE----ATFANRIFGPIAWTLPVFVAL 306
I + S ++V VYV ++ L E++ + A A G + + L AL
Sbjct: 224 AIFI--SILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGAL 281
Query: 307 -STFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSN 365
S +N I + + Y+ A +G++PE + T + + L +L+ + N
Sbjct: 282 FSISSAMNATIYGGANVAYSLAKDGELPEFFE--RKVWFKSTEGLYITSALGVLFALLFN 339
Query: 366 IFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMM 425
+ + + + +L +L + I ++ VF+ L+
Sbjct: 340 MEGVASITSAVFMVIYLFVILSHYILIDEVGGRKEIVIFSFI-----VVLGVFLLLLYYQ 394
Query: 426 ASPVETGIGCLMIATSVPVYMVFIAWRNKPKVFTKSV 462
++ + I + + F+ ++
Sbjct: 395 WITNRFVFYGIIATFIGVLIFEIIYRKVTKRTFSNNM 431
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 2e-07
Identities = 68/384 (17%), Positives = 114/384 (29%), Gaps = 159/384 (41%)
Query: 14 IFG-----ETKYF--------TFENSTTDVTSIA------LS--------FYSGLFAYNG 46
IFG + YF T+ D+ + L ++
Sbjct: 159 IFGGQGNTDD-YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 47 WNYLNFIIEELKDPIVNLPRAIY-----ISCTLVTVV----YVLTNVAFYTTLSPAEVLN 97
W L++P N P Y ISC L+ V+ YV+T A +P E+ +
Sbjct: 218 W---------LENP-SNTPDKDYLLSIPISCPLIGVIQLAHYVVT--AKLLGFTPGELRS 265
Query: 98 SEAVAVTFANRIFGPIAWTLPVFVALST----FGGVNGIILTTSRLFYAGACEGQMPEIL 153
A + + A V +A + F + + LF+ G
Sbjct: 266 YLKGATGHSQGL--VTA----VAIAETDSWESF--FVSVRKAITVLFFIG-VRCY----- 311
Query: 154 TMIQVT-KMTPTPAVL--TIVTCEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSN 210
+ + P++L ++ EG P+P LS+ L
Sbjct: 312 ---EAYPNTSLPPSILEDSLENNEG--------------VPSPM------LSISNLTQEQ 348
Query: 211 IFALINYVGFATWTFANRIFGPIAWTLP----VFVALSTFGGVNG---IILT--TSSVLV 261
+ +N N LP V ++L VNG ++++ S L
Sbjct: 349 VQDYVNKT--------NS-------HLPAGKQVEISL-----VNGAKNLVVSGPPQS-LY 387
Query: 262 TVVYVLTNVAFYTTLSPAEVLNSE--ATFANRIFGPIA---------------------- 297
+ L + L + + SE F+NR F P+A
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR-FLPVASPFHSHLLVPASDLINKDLVKN 446
Query: 298 --------WTLPVFVALSTFGGVN 313
+PV+ TF G +
Sbjct: 447 NVSFNAKDIQIPVY---DTFDGSD 467
Score = 31.9 bits (72), Expect = 0.60
Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 34/131 (25%)
Query: 216 NYVGFATWTFANRIFGPIAWTLPVFVALS------TFGGVNGII-LT--TSSVLVTVVYV 266
NY F + G + T +F ++ TF G++ T T L +
Sbjct: 1687 NYSAM---IFETIVDGKLK-TEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM--- 1739
Query: 267 LTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPV--FVALSTFGGV----NGIILTTS 320
A + L ++ ++ATFA G + + AL++ V + + +
Sbjct: 1740 --EKAAFEDLKSKGLIPADATFA----G-----HSLGEYAALASLADVMSIESLVEVVFY 1788
Query: 321 R-LFYAGACEG 330
R + A
Sbjct: 1789 RGMTMQVAVPR 1799
Score = 28.9 bits (64), Expect = 4.6
Identities = 29/223 (13%), Positives = 63/223 (28%), Gaps = 70/223 (31%)
Query: 11 VANIFGETKYFTFEN---STTDV-----TSIALSF--YSGLFAYNGWNYLNFIIEELKDP 60
+++ + S D+ ++ + F G NY I E + D
Sbjct: 1642 AQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE--NYSAMIFETIVDG 1699
Query: 61 IVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNS-E----A-VAVTFANRIFGPI- 113
+ + + T+ F S +L++ + A + A F +
Sbjct: 1700 KLKTEKI------FKEINEHSTSYTFR---SEKGLLSATQFTQPALTLMEKA--AFEDLK 1748
Query: 114 AWTL-PV-----------FVALSTFGGV----NGIILTTSR-LFYAGACE---------- 146
+ L P + AL++ V + + + R + A
Sbjct: 1749 SKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYG 1808
Query: 147 ------GQMPEILTMIQVTKM-----TPTPAVLTIV--TCEGQ 176
G++ + + + T ++ IV E Q
Sbjct: 1809 MIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQ 1851
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT,
glutamate-GABA antiporter, transport protein; 3.10A
{Escherichia coli} PDB: 4dji_A
Length = 511
Score = 52.6 bits (126), Expect = 2e-07
Identities = 24/158 (15%), Positives = 50/158 (31%), Gaps = 10/158 (6%)
Query: 7 IMIGVANIFGETKYFTFENSTTDVTSIALSFYSGL----FAYNGWNYLNFIIEELKDPIV 62
+ + G ++ T + +Y G + E+ +P
Sbjct: 173 ALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGR 232
Query: 63 NLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFA---NRIFGPIAWTLPV 119
+ P A+ + + + ++ + E+ S V TF + + I WT+ V
Sbjct: 233 DYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRV 292
Query: 120 F---VALSTFGGVNGIILTTSRLFYAGACEGQMPEILT 154
+ L + I+ SR Y A + +P
Sbjct: 293 ISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFA 330
Score = 44.1 bits (104), Expect = 7e-05
Identities = 26/221 (11%), Positives = 65/221 (29%), Gaps = 26/221 (11%)
Query: 257 SSVLVTVVYVLTNVAFYTTLSPAEVLNSEATF------ANRIFGPIAWTLPVF---VALS 307
V + + ++ + E+ S + + I WT+ V + L
Sbjct: 241 LMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLG 300
Query: 308 TFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYL------ 361
+ I+ SR Y A + +P + + T + + S+ +
Sbjct: 301 VLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMNKNGVPVTLVISQLVITSIALIILTNTG 360
Query: 362 --MSSNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHL---------IFPA 410
+ + + + + + VL PDL R + I
Sbjct: 361 GGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVKLVVAIVGL 420
Query: 411 AYLIASVFVTLVPMMASPVETGIGCLMIATSVPVYMVFIAW 451
I + V+ +P ++ + + + ++ + +
Sbjct: 421 LTSIMAFIVSFLPPDNIQGDSTDMYVELLVVSFLVVLALPF 461
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.0 bits (121), Expect = 7e-07
Identities = 64/481 (13%), Positives = 113/481 (23%), Gaps = 186/481 (38%)
Query: 2 DYVVQIMIG--VANIFGETK-----YFTFENSTTDVTSIALSFYSGLFAYN-GWNYLNFI 53
D I+ + +I F + + F + N + ++ I
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF-LMSPI 98
Query: 54 IEELKDPIVNLPRAIYISC-----------------------TLVTVVYVL---TNVAFY 87
E + P ++ +YI L + L NV
Sbjct: 99 KTEQRQP--SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 88 -------TTLSPAEVLNSEAVAVTFANRIFGPIAWTLPVFVALSTFGGVN---GIILTTS 137
T ++ +V S V +IF W N ++
Sbjct: 157 GVLGSGKTWVA-LDVCLSYKVQCKMDFKIF----WL--------NLKNCNSPETVLEMLQ 203
Query: 138 RLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQVTKMTPTPAVLT 197
+L Y Q+ T + + + + E L + +K
Sbjct: 204 KLLY------QIDPNWT-SRSDHSSNIKLRIHSIQAE------LRRLLKSKPYEN----- 245
Query: 198 IAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNG---IIL 254
LL L N+ A F N I+L
Sbjct: 246 ----CLLVL--LNV-----------QN---------AKAWNAF---------NLSCKILL 270
Query: 255 TTSSVLVT------VVYVLTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALST 308
TT VT ++ TL+P E ++
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDE---VKSLLLK------------------ 309
Query: 309 FGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFA 368
Y +P +V P + S++ + A
Sbjct: 310 ---------------YLDCRPQDLPR-----EVLTTNP----RRL---SIIAESIRDGLA 342
Query: 369 LINYVGFATWLSIGVGVL------CLPVLRYTQPDLPRPIKVHL-IFPAAYLI-ASVFVT 420
+ W + L L VL +P R + L +FP + I +
Sbjct: 343 TWDN-----WKHVNCDKLTTIIESSLNVL---EPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 421 L 421
+
Sbjct: 395 I 395
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.8 bits (72), Expect = 0.59
Identities = 7/29 (24%), Positives = 8/29 (27%), Gaps = 4/29 (13%)
Query: 118 PVFVALST---FGGVNG-IILTTSRLFYA 142
V T FG G I+ Y
Sbjct: 1436 GVRAVSITSFGFGQKGGQAIVVHPDYLYG 1464
Score = 31.8 bits (72), Expect = 0.59
Identities = 7/29 (24%), Positives = 8/29 (27%), Gaps = 4/29 (13%)
Query: 301 PVFVALST---FGGVNG-IILTTSRLFYA 325
V T FG G I+ Y
Sbjct: 1436 GVRAVSITSFGFGQKGGQAIVVHPDYLYG 1464
Score = 30.6 bits (69), Expect = 1.6
Identities = 5/20 (25%), Positives = 6/20 (30%), Gaps = 3/20 (15%)
Query: 238 PVFVALST---FGGVNGIIL 254
V T FG G +
Sbjct: 1436 GVRAVSITSFGFGQKGGQAI 1455
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase,
transferase, sulfate metabolism, nucleotide 2 kinase;
2.95A {Thiobacillus denitrificans}
Length = 552
Score = 28.7 bits (64), Expect = 5.2
Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 6/58 (10%)
Query: 379 LSIGVGVLCLPVLRYTQPDLPRP---IKVHLIFPAAYLIASVFVTLVPM---MASPVE 430
+ +L P + + P ++ L + A+ ++L+P AS
Sbjct: 188 IENEANLLLHPQVGGDITEAPAYFGLVRSFLAIRDRFPAATTQLSLLPAPPPEASGRA 245
>3tij_A NUPC family protein; membrane transporter, nucleoside transporter,
drug transport uridine, nucleosides, membrane protein;
HET: URI DMU; 2.44A {Vibrio cholerae}
Length = 424
Score = 27.7 bits (62), Expect = 8.7
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 198 IAFLSLLYLMSSNIFALINYVGFATWTFANRIFG----PIAWTL 237
IAF+ L+ L++ + + + G + G P+A+ +
Sbjct: 274 IAFIGLIALINGMLGGIGGWFGMPELKL-EMLLGWLFAPLAFLI 316
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.139 0.421
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,132,402
Number of extensions: 431720
Number of successful extensions: 921
Number of sequences better than 10.0: 1
Number of HSP's gapped: 907
Number of HSP's successfully gapped: 35
Length of query: 472
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 375
Effective length of database: 3,993,456
Effective search space: 1497546000
Effective search space used: 1497546000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (26.7 bits)