RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7925
         (472 letters)



>d2p10a1 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387
           {Mesorhizobium loti [TaxId: 381]}
          Length = 197

 Score = 27.9 bits (62), Expect = 1.7
 Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 6/90 (6%)

Query: 67  AIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFANRIFGPIAWTLPVFVALSTF 126
            I I  +    +    ++A           N+  + V  A  +  P+    PV   ++  
Sbjct: 43  LIVIYNSGRYRMAGRGSLAGLLAYG-----NANQIVVDMAREVL-PVVRHTPVLAGVNGT 96

Query: 127 GGVNGIILTTSRLFYAGACEGQMPEILTMI 156
                +      L   G    Q    + +I
Sbjct: 97  DPFMVMSTFLRELKEIGFAGVQNFPTVGLI 126


>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 514

 Score = 27.1 bits (60), Expect = 5.8
 Identities = 18/75 (24%), Positives = 32/75 (42%)

Query: 189 MTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGG 248
            T    V T A+ +   ++ +    +  +   AT    N  + P       F+ L T GG
Sbjct: 293 FTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGG 352

Query: 249 VNGIILTTSSVLVTV 263
           + GI+L  SS+ + +
Sbjct: 353 LTGIVLANSSLDIVL 367


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.139    0.421 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,699,303
Number of extensions: 77189
Number of successful extensions: 229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 18
Length of query: 472
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 383
Effective length of database: 1,185,626
Effective search space: 454094758
Effective search space used: 454094758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.2 bits)