RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7928
         (87 letters)



>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
          transporter; 3.50A {Escherichia coli}
          Length = 375

 Score = 24.1 bits (53), Expect = 8.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)

Query: 30 IVDRLGRRILLLVSAVIMALSTL 52
          I DR+GRR ++LV   I  L+TL
Sbjct: 58 ISDRVGRRPVILVGMSIFMLATL 80


>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel,
          transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus}
          SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*
          Length = 807

 Score = 24.3 bits (52), Expect = 8.1
 Identities = 10/48 (20%), Positives = 13/48 (27%), Gaps = 11/48 (22%)

Query: 4  GVLWNPNLCTIIV-----------GTIMMVTTWIATMIVDRLGRRILL 40
            L     CT+I                 VT +      DR G  + L
Sbjct: 26 NYLGTEKFCTVISHNAGGYSFYNSPEYNRVTKFRPNATFDRPGHYVYL 73


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl RED
            beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
            cerevisiae}
          Length = 1688

 Score = 24.1 bits (52), Expect = 9.9
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 30   IVDRLGRRILLLVSAVIMAL--STLTMGYYFYLKNSGSDVSNIG 71
            I+ ++    L ++ +V+ A   S +T  Y  Y     S+V N  
Sbjct: 1005 IISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCS 1048


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.331    0.144    0.460 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,364,927
Number of extensions: 64978
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 17
Length of query: 87
Length of database: 6,701,793
Length adjustment: 55
Effective length of query: 32
Effective length of database: 5,166,138
Effective search space: 165316416
Effective search space used: 165316416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (23.5 bits)