RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7928
         (87 letters)



>d3eaua1 c.1.7.1 (A:36-361) Voltage-dependent K+ channel beta
          subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 326

 Score = 23.4 bits (49), Expect = 4.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 54 MGYYFYLKNSGSDVSNIG 71
          + +Y  L  SG  VS +G
Sbjct: 1  LQFYRNLGKSGLRVSCLG 18


>d1vhka2 c.116.1.5 (A:74-253) Hypothetical protein YqeU {Bacillus
           subtilis [TaxId: 1423]}
          Length = 180

 Score = 23.2 bits (49), Expect = 5.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 33  RLGRRILLLVSAVIMALSTL 52
            LG RIL   +A + ALS +
Sbjct: 153 GLGPRILRTETAPLYALSAI 172


>d1nxza2 c.116.1.5 (A:74-247) Hypothetical protein HI0303
           {Haemophilus influenzae [TaxId: 727]}
          Length = 174

 Score = 22.8 bits (48), Expect = 6.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 33  RLGRRILLLVSAVIMALSTL 52
            LG+R+L   +A + A+S L
Sbjct: 144 LLGKRVLRTETASLAAISAL 163


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.144    0.460 

Gapped
Lambda     K      H
   0.267   0.0421    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 332,936
Number of extensions: 11500
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 10
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.7 bits)