Query psy7929
Match_columns 259
No_of_seqs 197 out of 1196
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 22:27:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7929.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7929hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5034 TNG2 Chromatin remodel 100.0 8.8E-40 1.9E-44 281.1 20.0 252 3-259 4-266 (271)
2 KOG1973|consensus 100.0 1.2E-36 2.7E-41 272.4 13.0 232 3-259 7-264 (274)
3 PF12998 ING: Inhibitor of gro 99.9 2.5E-27 5.4E-32 183.0 12.3 103 4-106 1-105 (105)
4 PF00628 PHD: PHD-finger; Int 98.6 1.8E-08 4E-13 67.5 1.6 40 216-258 1-46 (51)
5 smart00249 PHD PHD zinc finger 98.5 9.5E-08 2.1E-12 61.9 2.6 41 216-259 1-46 (47)
6 KOG1512|consensus 97.7 1.6E-05 3.4E-10 70.7 1.4 40 216-258 316-357 (381)
7 KOG0954|consensus 97.4 4.9E-05 1.1E-09 75.1 1.3 46 210-258 267-316 (893)
8 KOG4299|consensus 97.3 0.0001 2.2E-09 71.8 1.3 42 215-259 254-301 (613)
9 KOG4323|consensus 97.2 0.00013 2.9E-09 69.4 1.0 42 214-258 171-219 (464)
10 PF13831 PHD_2: PHD-finger; PD 97.0 0.00021 4.6E-09 44.5 0.3 31 225-258 2-33 (36)
11 KOG0825|consensus 96.9 0.00045 9.8E-09 68.9 2.2 46 212-259 213-262 (1134)
12 KOG1244|consensus 96.5 0.0019 4.2E-08 57.3 2.7 43 213-258 280-326 (336)
13 KOG0955|consensus 96.3 0.0024 5.1E-08 66.6 2.6 45 212-259 217-265 (1051)
14 COG5141 PHD zinc finger-contai 95.7 0.0037 8.1E-08 59.6 1.0 42 215-259 194-239 (669)
15 KOG0383|consensus 95.2 0.0075 1.6E-07 60.6 1.2 41 214-259 47-90 (696)
16 KOG1245|consensus 94.9 0.0061 1.3E-07 65.8 -0.5 44 213-259 1107-1154(1404)
17 KOG1632|consensus 94.8 0.011 2.5E-07 54.9 1.1 40 216-258 62-108 (345)
18 KOG0957|consensus 91.9 0.19 4.1E-06 48.5 4.0 48 208-258 113-174 (707)
19 KOG0957|consensus 91.3 4.6 0.0001 39.3 12.6 40 216-258 546-593 (707)
20 KOG2752|consensus 89.5 0.18 3.9E-06 45.9 1.5 31 213-246 127-165 (345)
21 PF13771 zf-HC5HC2H: PHD-like 88.3 0.26 5.7E-06 36.3 1.4 30 215-246 37-67 (90)
22 COG1382 GimC Prefoldin, chaper 87.6 12 0.00027 29.5 13.1 102 13-114 1-111 (119)
23 KOG1632|consensus 86.7 0.1 2.3E-06 48.6 -1.9 47 210-259 235-291 (345)
24 PF13832 zf-HC5HC2H_2: PHD-zin 85.2 0.41 8.8E-06 36.7 1.1 31 214-246 55-86 (110)
25 PF11932 DUF3450: Protein of u 82.5 18 0.0004 31.8 10.6 71 19-89 88-158 (251)
26 PF13341 RAG2_PHD: RAG2 PHD do 80.3 0.68 1.5E-05 32.9 0.5 31 226-258 29-66 (78)
27 TIGR02338 gimC_beta prefoldin, 80.2 24 0.00053 27.0 11.9 46 67-112 61-106 (110)
28 PF05781 MRVI1: MRVI1 protein; 79.7 30 0.00066 34.1 11.6 29 85-113 290-318 (538)
29 PRK09343 prefoldin subunit bet 78.1 31 0.00067 27.1 12.1 101 14-114 3-112 (121)
30 PF10796 Anti-adapt_IraP: Sigm 77.3 22 0.00048 26.5 7.8 77 20-99 5-81 (87)
31 PRK15365 type III secretion sy 77.0 30 0.00065 26.3 10.0 79 23-106 7-92 (107)
32 PF03194 LUC7: LUC7 N_terminus 76.6 25 0.00053 31.4 9.4 67 25-94 90-160 (254)
33 PF11690 DUF3287: Protein of u 74.3 12 0.00026 29.1 5.9 54 54-107 31-85 (109)
34 KOG0994|consensus 73.9 41 0.00088 36.4 11.2 43 68-110 1565-1607(1758)
35 KOG1473|consensus 70.5 2.9 6.4E-05 44.3 2.3 38 216-258 346-386 (1414)
36 PF10146 zf-C4H2: Zinc finger- 69.8 40 0.00086 29.7 9.0 40 11-50 11-50 (230)
37 PF04949 Transcrip_act: Transc 68.1 67 0.0014 26.4 11.1 29 66-94 113-141 (159)
38 COG5034 TNG2 Chromatin remodel 67.8 32 0.00069 30.8 7.8 65 37-101 27-101 (271)
39 PF05384 DegS: Sensor protein 66.9 73 0.0016 26.4 12.0 100 8-107 17-125 (159)
40 PF07649 C1_3: C1-like domain; 65.3 1.8 3.9E-05 25.3 -0.3 27 216-245 2-30 (30)
41 PF01627 Hpt: Hpt domain; Int 65.0 45 0.00097 23.3 7.9 86 5-100 2-88 (90)
42 PF10158 LOH1CR12: Tumour supp 65.0 71 0.0015 25.6 10.9 33 18-50 49-81 (131)
43 KOG4443|consensus 64.5 4 8.7E-05 40.9 1.8 41 215-258 69-113 (694)
44 PRK10869 recombination and rep 64.3 54 0.0012 32.6 9.7 7 216-222 487-493 (553)
45 KOG4552|consensus 63.5 1E+02 0.0022 26.9 11.1 87 22-112 12-99 (272)
46 PHA02562 46 endonuclease subun 62.5 1E+02 0.0022 30.1 11.3 25 17-41 298-322 (562)
47 PF08702 Fib_alpha: Fibrinogen 62.0 86 0.0019 25.5 13.4 37 71-107 95-131 (146)
48 KOG4360|consensus 60.8 1.4E+02 0.0031 29.4 11.3 77 25-107 205-281 (596)
49 COG5194 APC11 Component of SCF 60.1 2.3 5E-05 31.2 -0.5 32 215-246 21-64 (88)
50 PRK10244 anti-RssB factor; Pro 59.8 71 0.0015 23.9 7.3 74 20-99 5-81 (88)
51 PF05010 TACC: Transforming ac 59.6 1.2E+02 0.0026 26.3 13.7 32 63-94 126-157 (207)
52 COG4575 ElaB Uncharacterized c 58.3 84 0.0018 24.2 9.1 63 28-94 11-74 (104)
53 KOG4460|consensus 58.3 1.1E+02 0.0023 30.6 10.1 35 4-38 570-605 (741)
54 PF04100 Vps53_N: Vps53-like, 57.1 1.8E+02 0.0038 27.6 12.3 44 66-110 65-108 (383)
55 smart00502 BBC B-Box C-termina 56.8 82 0.0018 23.6 12.1 22 80-101 72-93 (127)
56 KOG3579|consensus 56.5 9.5 0.00021 34.6 2.6 51 206-258 260-315 (352)
57 PF04380 BMFP: Membrane fusoge 56.3 74 0.0016 23.0 8.4 70 39-108 9-78 (79)
58 KOG1937|consensus 55.7 1.9E+02 0.0041 28.2 11.1 13 95-107 397-409 (521)
59 PF13758 Prefoldin_3: Prefoldi 55.7 70 0.0015 24.4 6.8 81 23-112 3-93 (99)
60 PF05103 DivIVA: DivIVA protei 54.9 7.7 0.00017 30.3 1.6 34 6-42 23-56 (131)
61 KOG1844|consensus 54.8 11 0.00024 36.5 3.1 43 213-258 85-130 (508)
62 PF11221 Med21: Subunit 21 of 54.2 1.1E+02 0.0025 24.5 10.3 57 42-98 82-140 (144)
63 PF01765 RRF: Ribosome recycli 54.0 68 0.0015 26.4 7.2 34 77-110 131-164 (165)
64 KOG1671|consensus 52.6 6.3 0.00014 33.8 0.8 18 241-258 155-173 (210)
65 COG1579 Zn-ribbon protein, pos 52.1 1.7E+02 0.0037 25.9 11.0 76 16-111 1-76 (239)
66 PF06008 Laminin_I: Laminin Do 52.0 1.7E+02 0.0037 25.8 15.4 83 14-96 76-169 (264)
67 cd00632 Prefoldin_beta Prefold 51.9 1E+02 0.0022 23.3 12.0 96 9-112 4-102 (105)
68 PF06464 DMAP_binding: DMAP1-b 51.1 28 0.0006 27.0 4.2 21 13-36 2-22 (111)
69 TIGR00496 frr ribosome recycli 50.8 85 0.0018 26.4 7.4 33 79-111 142-174 (176)
70 PF00130 C1_1: Phorbol esters/ 50.5 15 0.00032 24.0 2.2 34 213-249 10-47 (53)
71 KOG3047|consensus 50.3 1.3E+02 0.0029 24.1 10.5 45 67-111 99-143 (157)
72 PF06160 EzrA: Septation ring 49.5 1.4E+02 0.0031 29.6 9.9 45 62-106 168-213 (560)
73 PF08746 zf-RING-like: RING-li 49.3 5.1 0.00011 25.6 -0.2 26 218-246 3-29 (43)
74 PF12252 SidE: Dot/Icm substra 49.3 2.6E+02 0.0056 30.4 11.7 51 4-54 1179-1229(1439)
75 PF15066 CAGE1: Cancer-associa 47.3 2.5E+02 0.0055 27.4 10.6 26 87-112 478-503 (527)
76 PRK11637 AmiB activator; Provi 46.7 2.6E+02 0.0057 26.5 12.4 30 80-109 89-118 (428)
77 PF04012 PspA_IM30: PspA/IM30 46.4 1.9E+02 0.004 24.7 11.9 104 5-112 27-130 (221)
78 PRK14127 cell division protein 46.1 80 0.0017 24.5 6.0 37 6-45 28-64 (109)
79 COG3937 Uncharacterized conser 46.0 1.4E+02 0.003 23.1 10.8 52 40-94 25-76 (108)
80 KOG0412|consensus 46.0 3.5E+02 0.0075 28.0 11.7 39 18-56 24-65 (773)
81 COG3404 Methenyl tetrahydrofol 45.9 2E+02 0.0043 24.9 11.6 84 13-96 52-137 (208)
82 PF10046 BLOC1_2: Biogenesis o 45.4 55 0.0012 24.7 4.9 31 7-37 48-78 (99)
83 PRK00083 frr ribosome recyclin 45.0 1.1E+02 0.0025 25.8 7.4 30 82-111 154-183 (185)
84 PF12761 End3: Actin cytoskele 44.7 2E+02 0.0044 24.7 8.8 29 16-44 94-122 (195)
85 PF13851 GAS: Growth-arrest sp 44.6 2E+02 0.0044 24.6 14.8 86 21-107 23-113 (201)
86 KOG1853|consensus 44.3 2.4E+02 0.0052 25.4 11.9 8 215-222 286-293 (333)
87 PHA02562 46 endonuclease subun 44.2 3.1E+02 0.0068 26.7 12.4 26 66-91 221-246 (562)
88 PF09755 DUF2046: Uncharacteri 44.2 2.6E+02 0.0057 25.8 11.6 23 68-90 109-131 (310)
89 PF15290 Syntaphilin: Golgi-lo 44.1 2.5E+02 0.0055 25.6 9.8 39 12-50 69-107 (305)
90 PF07139 DUF1387: Protein of u 43.5 2.6E+02 0.0057 25.7 11.5 51 62-112 204-254 (302)
91 PF04668 Tsg: Twisted gastrula 43.2 8.9 0.00019 30.8 0.3 12 235-246 100-114 (132)
92 PF04949 Transcrip_act: Transc 42.9 1.9E+02 0.0041 23.8 12.1 86 23-113 32-117 (159)
93 PF03938 OmpH: Outer membrane 42.8 1.7E+02 0.0037 23.3 10.6 52 29-80 47-98 (158)
94 KOG4443|consensus 42.7 5.5 0.00012 39.9 -1.2 33 215-250 146-183 (694)
95 PF10367 Vps39_2: Vacuolar sor 42.6 23 0.00049 26.3 2.5 26 215-245 79-107 (109)
96 PF08580 KAR9: Yeast cortical 42.5 4E+02 0.0086 27.4 12.8 49 60-108 96-144 (683)
97 PF07227 DUF1423: Protein of u 42.4 12 0.00026 36.0 1.1 25 218-245 133-161 (446)
98 KOG1666|consensus 42.4 2.3E+02 0.0051 24.7 10.4 83 26-113 4-91 (220)
99 COG0216 PrfA Protein chain rel 42.1 3E+02 0.0065 25.8 10.1 28 87-114 76-103 (363)
100 PF00645 zf-PARP: Poly(ADP-rib 42.0 6.8 0.00015 28.3 -0.5 10 238-247 39-48 (82)
101 COG0233 Frr Ribosome recycling 41.5 1.4E+02 0.0031 25.4 7.2 34 78-111 152-185 (187)
102 PF10168 Nup88: Nuclear pore c 41.5 2.9E+02 0.0062 28.6 10.8 19 7-25 550-568 (717)
103 PF08946 Osmo_CC: Osmosensory 41.1 36 0.00078 22.2 2.8 27 83-109 8-34 (46)
104 PF15450 DUF4631: Domain of un 40.3 3.8E+02 0.0083 26.6 14.0 44 65-111 386-429 (531)
105 PF10146 zf-C4H2: Zinc finger- 40.0 2.6E+02 0.0056 24.6 10.2 9 218-226 199-207 (230)
106 PRK10780 periplasmic chaperone 39.9 2.1E+02 0.0045 23.4 11.3 42 28-69 53-94 (165)
107 COG0497 RecN ATPase involved i 38.8 4.2E+02 0.009 26.6 13.5 24 89-112 337-360 (557)
108 KOG0964|consensus 38.6 5.4E+02 0.012 27.8 13.0 27 87-113 748-774 (1200)
109 PF07011 DUF1313: Protein of u 38.5 79 0.0017 23.5 4.6 36 15-50 39-74 (87)
110 PF06008 Laminin_I: Laminin Do 38.4 2.8E+02 0.0061 24.4 10.9 32 77-108 203-234 (264)
111 cd07599 BAR_Rvs167p The Bin/Am 37.8 2.6E+02 0.0055 23.8 10.5 21 77-97 153-173 (216)
112 PRK14154 heat shock protein Gr 37.7 2.7E+02 0.0059 24.1 8.9 24 69-94 91-114 (208)
113 PRK00808 hypothetical protein; 37.5 2.2E+02 0.0047 22.9 10.5 48 63-110 83-130 (150)
114 KOG0996|consensus 37.4 4.6E+02 0.0099 28.8 11.5 47 65-111 885-931 (1293)
115 smart00744 RINGv The RING-vari 36.4 14 0.00031 24.2 0.4 9 238-246 26-34 (49)
116 PF03148 Tektin: Tektin family 36.2 3.7E+02 0.0081 25.3 13.0 105 6-112 253-370 (384)
117 TIGR01005 eps_transp_fam exopo 36.1 4.1E+02 0.0088 27.2 11.1 75 25-99 288-364 (754)
118 PF10497 zf-4CXXC_R1: Zinc-fin 35.9 24 0.00052 27.1 1.7 49 210-259 3-66 (105)
119 COG4717 Uncharacterized conser 35.4 5.7E+02 0.012 27.2 12.0 40 73-112 675-715 (984)
120 cd00890 Prefoldin Prefoldin is 35.0 1.9E+02 0.0042 22.0 6.8 46 67-112 81-126 (129)
121 PF12718 Tropomyosin_1: Tropom 34.8 2.4E+02 0.0053 22.7 12.5 44 66-110 53-96 (143)
122 COG1283 NptA Na+/phosphate sym 34.6 4.3E+02 0.0094 26.3 10.4 96 6-101 368-497 (533)
123 PF10046 BLOC1_2: Biogenesis o 34.4 2E+02 0.0043 21.6 12.6 27 79-105 72-98 (99)
124 PRK10807 paraquat-inducible pr 34.3 4.8E+02 0.01 26.0 14.1 13 5-17 421-433 (547)
125 cd00520 RRF Ribosome recycling 33.9 1.8E+02 0.0038 24.4 6.8 32 79-110 147-178 (179)
126 PF09726 Macoilin: Transmembra 33.9 4.7E+02 0.01 26.9 10.9 26 88-113 539-564 (697)
127 PF11793 FANCL_C: FANCL C-term 33.6 23 0.0005 25.0 1.1 30 216-246 4-38 (70)
128 PRK08032 fliD flagellar cappin 33.5 2.2E+02 0.0048 27.5 8.3 95 9-107 362-458 (462)
129 smart00109 C1 Protein kinase C 33.5 22 0.00047 22.2 0.9 32 213-247 10-44 (49)
130 PF03107 C1_2: C1 domain; Int 33.4 42 0.00091 19.5 2.1 27 216-245 2-30 (30)
131 PRK05658 RNA polymerase sigma 33.1 3.4E+02 0.0073 27.3 9.7 27 14-40 214-240 (619)
132 PF07496 zf-CW: CW-type Zinc F 33.1 25 0.00055 23.1 1.2 27 227-258 3-33 (50)
133 PF12889 DUF3829: Protein of u 32.0 1.8E+02 0.0039 25.4 7.0 30 83-112 168-203 (276)
134 KOG1493|consensus 31.8 15 0.00033 26.8 -0.1 31 216-246 22-61 (84)
135 PF04961 FTCD_C: Formiminotran 31.6 3.1E+02 0.0068 23.0 9.1 75 18-92 52-128 (184)
136 PF07319 DnaI_N: Primosomal pr 30.8 1.8E+02 0.0038 21.6 5.7 31 28-58 15-48 (94)
137 PF09755 DUF2046: Uncharacteri 30.6 4.4E+02 0.0095 24.4 14.1 38 72-109 156-193 (310)
138 PF05064 Nsp1_C: Nsp1-like C-t 29.6 41 0.00089 26.2 2.1 28 28-55 18-45 (116)
139 PRK10132 hypothetical protein; 29.3 2.7E+02 0.0058 21.5 9.6 46 30-75 10-58 (108)
140 PRK14011 prefoldin subunit alp 29.2 1.7E+02 0.0037 23.8 5.7 48 67-114 82-129 (144)
141 PLN02678 seryl-tRNA synthetase 28.9 5.5E+02 0.012 24.9 10.5 22 92-113 83-104 (448)
142 PF07851 TMPIT: TMPIT-like pro 28.8 4.8E+02 0.01 24.3 10.4 44 63-110 47-91 (330)
143 PF00038 Filament: Intermediat 28.3 3.2E+02 0.007 24.4 8.1 78 6-84 218-295 (312)
144 KOG0982|consensus 28.2 5.1E+02 0.011 25.2 9.3 20 67-86 376-395 (502)
145 PF08822 DUF1804: Protein of u 28.2 3.6E+02 0.0077 22.6 11.3 60 51-110 88-154 (165)
146 KOG3564|consensus 28.0 6E+02 0.013 25.2 9.8 50 63-112 50-102 (604)
147 PF12095 DUF3571: Protein of u 28.0 1.3E+02 0.0028 22.3 4.3 32 4-39 31-62 (83)
148 KOG1512|consensus 27.4 18 0.00039 32.9 -0.3 43 213-258 260-312 (381)
149 PRK04778 septation ring format 27.3 6.3E+02 0.014 25.1 13.3 9 5-13 209-217 (569)
150 PF10732 DUF2524: Protein of u 27.3 2.6E+02 0.0056 20.7 8.1 60 4-63 5-68 (84)
151 PF11985 DUF3486: Protein of u 27.0 3.6E+02 0.0079 22.3 7.8 18 12-29 6-24 (180)
152 KOG1655|consensus 26.7 1.3E+02 0.0028 26.0 4.6 30 83-112 22-51 (218)
153 PF08542 Rep_fac_C: Replicatio 26.2 2.4E+02 0.0052 20.0 9.1 34 54-87 52-85 (89)
154 TIGR01013 2a58 Phosphate:Na+ S 26.2 5.9E+02 0.013 24.4 10.3 13 87-99 419-431 (456)
155 COG0723 QcrA Rieske Fe-S prote 26.2 33 0.00071 28.5 1.0 18 241-258 110-129 (177)
156 PF11083 Streptin-Immun: Lanti 26.0 3E+02 0.0065 21.0 9.9 35 27-61 1-37 (99)
157 TIGR03545 conserved hypothetic 25.8 6.3E+02 0.014 25.3 10.0 42 67-108 217-258 (555)
158 TIGR01149 mtrG N5-methyltetrah 25.8 1.9E+02 0.0041 20.6 4.6 31 17-47 11-41 (70)
159 PF12999 PRKCSH-like: Glucosid 25.6 4.1E+02 0.0089 22.4 7.8 25 83-107 149-173 (176)
160 PF14075 UBN_AB: Ubinuclein co 25.5 4.5E+02 0.0097 22.8 11.0 18 14-31 3-20 (214)
161 PF04849 HAP1_N: HAP1 N-termin 25.3 5.4E+02 0.012 23.7 11.5 46 62-108 238-283 (306)
162 COG0466 Lon ATP-dependent Lon 25.2 4.7E+02 0.01 27.2 9.0 10 98-107 271-280 (782)
163 PF05164 ZapA: Cell division p 25.0 2.6E+02 0.0055 19.8 10.3 26 33-58 22-47 (89)
164 cd04772 HTH_TioE_rpt1 First He 25.0 96 0.0021 23.2 3.3 23 87-109 76-98 (99)
165 cd00029 C1 Protein kinase C co 24.8 47 0.001 20.9 1.4 32 213-247 10-45 (50)
166 PF13747 DUF4164: Domain of un 24.6 2.9E+02 0.0064 20.4 7.5 18 66-83 12-29 (89)
167 cd04777 HTH_MerR-like_sg1 Heli 24.4 2.1E+02 0.0045 21.4 5.2 24 87-110 81-104 (107)
168 TIGR00414 serS seryl-tRNA synt 24.3 6.3E+02 0.014 24.1 10.5 22 92-113 81-102 (418)
169 PHA03386 P10 fibrous body prot 24.3 3.2E+02 0.0068 20.6 7.2 31 17-47 4-34 (94)
170 KOG0612|consensus 24.3 9.8E+02 0.021 26.5 11.4 26 13-38 436-461 (1317)
171 COG5278 Predicted periplasmic 24.0 4.7E+02 0.01 22.6 8.9 43 4-50 77-122 (207)
172 PF06160 EzrA: Septation ring 23.9 7.2E+02 0.016 24.7 13.9 46 63-108 137-182 (560)
173 COG3058 FdhE Uncharacterized p 23.9 33 0.00071 31.1 0.6 38 212-251 183-235 (308)
174 PF13949 ALIX_LYPXL_bnd: ALIX 23.7 5.1E+02 0.011 22.8 10.4 23 19-41 26-48 (296)
175 COG4867 Uncharacterized protei 23.6 3.6E+02 0.0078 26.3 7.4 30 13-42 121-150 (652)
176 PF14992 TMCO5: TMCO5 family 23.6 3.6E+02 0.0078 24.5 7.2 29 64-92 132-160 (280)
177 KOG2685|consensus 23.6 6.7E+02 0.014 24.1 12.5 102 8-111 282-396 (421)
178 PRK10869 recombination and rep 23.5 7.3E+02 0.016 24.6 12.8 21 19-39 248-268 (553)
179 PF15254 CCDC14: Coiled-coil d 23.5 8.7E+02 0.019 25.5 11.6 28 80-107 515-542 (861)
180 PF02996 Prefoldin: Prefoldin 23.4 3.3E+02 0.0071 20.5 6.3 42 70-111 74-115 (120)
181 TIGR01069 mutS2 MutS2 family p 23.3 8.6E+02 0.019 25.3 13.4 16 28-43 507-522 (771)
182 KOG4721|consensus 23.3 8.3E+02 0.018 25.1 10.4 37 76-112 428-467 (904)
183 PF03234 CDC37_N: Cdc37 N term 23.2 4.6E+02 0.0099 22.1 9.6 104 7-112 42-156 (177)
184 PF08535 KorB: KorB domain; I 23.2 3E+02 0.0065 20.0 7.0 23 2-25 16-38 (93)
185 KOG1937|consensus 23.1 7.2E+02 0.016 24.3 13.5 26 8-33 370-397 (521)
186 PHA03158 hypothetical protein; 23.1 1.3E+02 0.0028 25.9 4.0 34 75-108 229-268 (273)
187 TIGR03185 DNA_S_dndD DNA sulfu 23.0 7.9E+02 0.017 24.8 14.0 37 5-41 377-414 (650)
188 KOG1318|consensus 22.9 6.9E+02 0.015 24.1 9.3 75 30-112 229-322 (411)
189 KOG4674|consensus 22.9 1E+03 0.023 27.5 11.7 57 56-112 628-686 (1822)
190 PHA02414 hypothetical protein 22.9 3.5E+02 0.0076 20.6 8.6 69 30-107 2-77 (111)
191 KOG4466|consensus 22.8 5.9E+02 0.013 23.2 10.2 31 76-106 105-135 (291)
192 PF08400 phage_tail_N: Prophag 22.7 2.6E+02 0.0057 22.5 5.5 32 5-36 85-118 (134)
193 KOG1011|consensus 22.7 2.9E+02 0.0062 28.5 6.8 91 16-107 857-954 (1283)
194 PF02403 Seryl_tRNA_N: Seryl-t 22.7 3.3E+02 0.0071 20.3 9.8 21 92-112 79-99 (108)
195 PF11101 DUF2884: Protein of u 22.6 5.1E+02 0.011 22.5 9.2 60 54-113 42-111 (229)
196 PF05596 Taeniidae_ag: Taeniid 22.5 2.5E+02 0.0054 19.6 4.7 32 21-52 30-61 (64)
197 KOG4515|consensus 22.5 5E+02 0.011 22.3 10.3 20 18-37 113-132 (217)
198 KOG2176|consensus 22.4 8.1E+02 0.018 25.7 10.1 47 3-49 69-118 (800)
199 PF10498 IFT57: Intra-flagella 22.4 6.5E+02 0.014 23.6 10.8 20 62-81 301-320 (359)
200 KOG4057|consensus 22.2 4.5E+02 0.0098 21.7 7.8 36 74-114 32-67 (180)
201 PF07195 FliD_C: Flagellar hoo 22.2 4E+02 0.0086 23.1 7.2 46 5-50 179-225 (239)
202 cd04776 HTH_GnyR Helix-Turn-He 22.1 3.6E+02 0.0078 20.7 6.2 22 87-108 80-101 (118)
203 KOG4451|consensus 21.9 5E+02 0.011 23.1 7.4 39 5-43 51-89 (286)
204 PF10979 DUF2786: Protein of u 21.8 2.3E+02 0.0049 18.1 4.3 11 65-75 5-15 (43)
205 PF05008 V-SNARE: Vesicle tran 21.6 2.9E+02 0.0063 19.3 8.8 20 58-77 21-40 (79)
206 PRK01026 tetrahydromethanopter 21.4 2.4E+02 0.0053 20.5 4.6 31 17-47 14-44 (77)
207 KOG2129|consensus 21.4 7.6E+02 0.016 24.0 10.6 14 16-29 130-143 (552)
208 PF13865 FoP_duplication: C-te 21.4 1.7E+02 0.0037 20.8 3.9 23 29-51 44-70 (74)
209 PRK10626 hypothetical protein; 21.3 5E+02 0.011 23.0 7.5 40 55-94 65-107 (239)
210 COG1536 FliG Flagellar motor s 21.1 6.8E+02 0.015 23.3 9.2 101 7-107 147-266 (339)
211 PF10267 Tmemb_cc2: Predicted 20.9 7.4E+02 0.016 23.7 12.2 35 15-49 209-243 (395)
212 COG2433 Uncharacterized conser 20.8 9E+02 0.019 24.6 12.7 31 14-44 411-441 (652)
213 PF03961 DUF342: Protein of un 20.7 7.5E+02 0.016 23.7 10.3 70 27-112 329-407 (451)
214 PF05508 Ran-binding: RanGTP-b 20.7 4.8E+02 0.01 24.0 7.4 22 72-93 48-69 (302)
215 COG5259 RSC8 RSC chromatin rem 20.7 6.9E+02 0.015 24.6 8.7 40 66-105 418-457 (531)
216 PTZ00007 (NAP-L) nucleosome as 20.7 2E+02 0.0043 26.9 5.1 33 12-44 31-63 (337)
217 smart00787 Spc7 Spc7 kinetocho 20.6 6.7E+02 0.014 23.0 12.1 23 13-35 142-164 (312)
218 KOG0976|consensus 20.6 1E+03 0.023 25.3 11.9 31 20-50 247-277 (1265)
219 CHL00154 rpl29 ribosomal prote 20.6 3.1E+02 0.0068 19.2 5.1 21 61-81 43-63 (67)
220 PRK14127 cell division protein 20.5 2.2E+02 0.0047 22.1 4.5 38 5-42 31-68 (109)
221 PF15619 Lebercilin: Ciliary p 20.4 5.4E+02 0.012 21.9 14.4 38 5-42 48-85 (194)
222 PF10789 Phage_RpbA: Phage RNA 20.4 4.2E+02 0.009 20.6 6.4 35 7-43 29-63 (108)
223 KOG2751|consensus 20.3 8E+02 0.017 23.8 10.4 18 25-42 143-160 (447)
224 PF08389 Xpo1: Exportin 1-like 20.3 4E+02 0.0086 20.3 8.2 33 4-36 26-58 (148)
225 TIGR00570 cdk7 CDK-activating 20.3 3E+02 0.0064 25.4 6.0 10 7-16 96-105 (309)
226 KOG4673|consensus 20.1 1E+03 0.022 24.9 12.5 39 62-100 495-533 (961)
227 TIGR00606 rad50 rad50. This fa 20.0 1.2E+03 0.026 25.8 13.2 42 7-48 884-925 (1311)
No 1
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=100.00 E-value=8.8e-40 Score=281.10 Aligned_cols=252 Identities=27% Similarity=0.428 Sum_probs=154.0
Q ss_pred hhhHHHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCCChhHHH-HHHHHHHHHHHHHHHhhH
Q psy7929 3 TSYLEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRV--AEDYLDNMKHYSKDKKK-ETLAEIQKYFDKTKEYGD 79 (259)
Q Consensus 3 ~~yLedfld~ie~LP~El~r~l~~irelD~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~-~~~~~I~~~~~~~~~l~d 79 (259)
...|+||+|.|+|+|.|+.+.|++|.++|.++.++++.+.+. +.+|+.+.++++++++. .+.+.|++.|..+..++.
T Consensus 4 ~~~Lnd~~d~l~n~P~et~~~~t~l~~iD~k~~d~~k~l~q~~si~k~~~~~~~~t~~e~ed~l~k~i~Ell~~a~~~~~ 83 (271)
T COG5034 4 FPGLNDITDHLANVPSETDIRFTELSEIDAKVCDIIKNLRQMISILKKIIDLDSQTYEEVEDGLLKEIRELLLKAIYIQK 83 (271)
T ss_pred hHHHHHHHHHHHhCChhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccCccccchhHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999999999999998655 56788888888888887 455789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCC---CCCCCCC-CCCCCCCCCCCCCCcccccccccc--c
Q psy7929 80 DKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQE-KALKNTTG---GAGGGGS-GTGSGSGSAGGAASKSKRGRKKAK--D 152 (259)
Q Consensus 80 EKv~LA~~a~dlVd~hirrLD~dl~~~e~el~~-~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~k~~r~~~~--~ 152 (259)
+|..||+.+..++.||+++||..+++...+... .+++.... ...++.+ ..+.+++....+... -|++++. .
T Consensus 84 ~~~~l~d~~~~l~~Rh~~~~d~~~a~~~h~~~~~~ie~~~~~~s~~~~~~~ss~a~~ss~~~~saass--qgs~~t~~~~ 161 (271)
T COG5034 84 EKSDLADRAEKLLRRHRKLLDDRIAKRPHEKVAARIENCHDAVSRLERNSYSSAARRSSGEHRSAASS--QGSRHTKLKK 161 (271)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhhhhhhccccchhhhcccccccccccc--ccccCchhHH
Confidence 999999999999999999999998777654433 23222100 0010101 000000000000000 0000000 0
Q ss_pred hhhccccCCCCCCCCchhhhhhccccCCCCccccccccccCCCCC-CCCCCCCCCCCCCCCCCccceeCCCCCCCceeec
Q psy7929 153 KAESATDAAGDDKSSNSKKKVAKKITGVGGVVGVLNAIVAADPDV-AAPSHDVLDMPVDPNEPTYCVCQQVSYGEMIGCD 231 (259)
Q Consensus 153 ~~~~~~~~~~~~~~~~~kk~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~C~C~~~~~g~mi~Cd 231 (259)
++........++ ...+++.+.. +...++.+....+......+ .+....+.......++++||+|++|+||+||+||
T Consensus 162 R~n~~~~k~~~p-~~~S~r~~~~--t~~sp~v~~t~t~v~e~~~~~s~~~~~vss~d~se~e~lYCfCqqvSyGqMVaCD 238 (271)
T COG5034 162 RKNIHNLKRRSP-ELSSKREVSF--TLESPSVPDTATRVKEGNNGGSTKSRGVSSEDNSEGEELYCFCQQVSYGQMVACD 238 (271)
T ss_pred HHhhcccccCCc-chhhhccCCc--cCCCCCcccchhhhhcccCCCCccccCcCccccccCceeEEEecccccccceecC
Confidence 000000000000 0000111110 00000000000000000000 0011111111234678999999999999999999
Q ss_pred CCCCCCcceeeccCcCCcCCCcccccCC
Q psy7929 232 NPDCPIEWFHFACVSLTTKPKGKWYCPK 259 (259)
Q Consensus 232 ~~~c~~~wfH~~Cv~~~~~~~~~w~C~~ 259 (259)
|.+|++||||+.||||.++|+|+||||.
T Consensus 239 n~nCkrEWFH~~CVGLk~pPKG~WYC~e 266 (271)
T COG5034 239 NANCKREWFHLECVGLKEPPKGKWYCPE 266 (271)
T ss_pred CCCCchhheeccccccCCCCCCcEeCHH
Confidence 9999999999999999999999999983
No 2
>KOG1973|consensus
Probab=100.00 E-value=1.2e-36 Score=272.40 Aligned_cols=232 Identities=37% Similarity=0.678 Sum_probs=154.7
Q ss_pred hhhHHHHHHH----hhcccHHHHHhHHHHHHHHHHH--HHHHHHHH-HHHHHHHHhcCC-CChhHHHHHHHHHHHHHHHH
Q psy7929 3 TSYLEQYLDS----LDSLPIELQRNFTLMRELDSRA--QDVMKTID-RVAEDYLDNMKH-YSKDKKKETLAEIQKYFDKT 74 (259)
Q Consensus 3 ~~yLedfld~----ie~LP~El~r~l~~irelD~~~--~~~~~~i~-~~~~~~~~~~~~-~~~~~~~~~~~~I~~~~~~~ 74 (259)
+++++++++. +.+||..++++|..|.++|... .....+++ ..+..|++...+ ++.......+..|++.+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (274)
T KOG1973|consen 7 AILIEEVDDDIDMAVQNLPRNLQHNFDVIEDIDIFGRSENQKKELDLKVAVEYMSKGRSQLSKPQKDPLLEAIRSALRKC 86 (274)
T ss_pred hhhhhhcccccccccccCCccchhHHHHHhhhhccchhHHHHhhhhhhhhhccccccccccCccccchhHHHHHHHHhhh
Confidence 4577788888 9999999999999999999954 66666666 667788876663 34455667888999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCccccccc-cccch
Q psy7929 75 KEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQEKALKNTTGGAGGGGSGTGSGSGSAGGAASKSKRGRK-KAKDK 153 (259)
Q Consensus 75 ~~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~r~-~~~~~ 153 (259)
.++++||+++|.++++++.+||+++|..+..|+.++....... ...+. . + .+..+++++ ....+
T Consensus 87 ~~~~~ek~~~~~~~~e~~~~~~~~~~~~~~~~e~~~~~~~~~~----~~~~~-------~-~---~~~~~~~~~~~~~~~ 151 (274)
T KOG1973|consen 87 KELSDEKVQIAMQTVELIPKHIGRLETALKSFEVELELAKAES----SSKRS-------S-S---LKSAKKKEREVFKEK 151 (274)
T ss_pred hhhhhHHHHHHHHHHHhhHhhhcchhHHHHhcccchhhhhhhc----ccccc-------c-c---hhccCccccccccch
Confidence 9999999999999999999999999999998888777642000 11000 0 0 000111100 00000
Q ss_pred hh--ccccCCCCCCCCc-------------hhhhhhccccCCCCccccccccccCCCCCCC--CCCCCCCCCCCCCCCcc
Q psy7929 154 AE--SATDAAGDDKSSN-------------SKKKVAKKITGVGGVVGVLNAIVAADPDVAA--PSHDVLDMPVDPNEPTY 216 (259)
Q Consensus 154 ~~--~~~~~~~~~~~~~-------------~kk~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 216 (259)
.. .+........+.. ++++.+... .... +.+. .... .+....+...|+++++|
T Consensus 152 ~~s~~~~~~~~s~~~~~~~~~~~~~~~~~~rekk~~v~~-------~~~~-~t~~--~~~s~~~~~~~~~~~~d~~e~~y 221 (274)
T KOG1973|consen 152 KESKQGSSEKPSSVDKAKKGSKVNRRPCGAREKKRKVVE-------AKKE-KTPK--NKSSRPAESMESEEAVDPDEPTY 221 (274)
T ss_pred hhcCCCCCCCcccccccccccccccccchhhhhhhhhcc-------cccc-cccc--CCCCCcccccccccccCCCCCEE
Confidence 00 0000000000000 111111000 0000 0000 1111 33455577789999999
Q ss_pred ceeCCCCCCCceeecCCCCCCcceeeccCcCCcCCCcccccCC
Q psy7929 217 CVCQQVSYGEMIGCDNPDCPIEWFHFACVSLTTKPKGKWYCPK 259 (259)
Q Consensus 217 C~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~~~~~~~~~w~C~~ 259 (259)
|+|++++||+||+|||.+|+++||||.||||+.+|+|+||||+
T Consensus 222 C~Cnqvsyg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~ 264 (274)
T KOG1973|consen 222 CICNQVSYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPR 264 (274)
T ss_pred EEecccccccccccCCCCCCcceEEEeccccccCCCCcccchh
Confidence 9999999999999999999999999999999999999999984
No 3
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=99.95 E-value=2.5e-27 Score=182.98 Aligned_cols=103 Identities=47% Similarity=0.834 Sum_probs=96.8
Q ss_pred hhHHHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHHHHHHHHHhhHHH
Q psy7929 4 SYLEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMKH--YSKDKKKETLAEIQKYFDKTKEYGDDK 81 (259)
Q Consensus 4 ~yLedfld~ie~LP~El~r~l~~irelD~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~I~~~~~~~~~l~dEK 81 (259)
+|||+|+++|++||.||+|+|++||+||.++++...++++.+.+|++..++ ++++.+...+.+|+..+.+++.+++||
T Consensus 1 ~~le~f~d~~~~LP~el~r~l~~irelD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~deK 80 (105)
T PF12998_consen 1 TYLEDFLDSLENLPAELQRNLTLIRELDAKSQDLLEELDQQIQKFIKNHGSPSLSPEKRRELLKEIQEEYERALELSDEK 80 (105)
T ss_dssp HHHHHHHTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTS--S-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999999988 888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 82 VQLAIQTYEMVDKYIRKLDTDLARF 106 (259)
Q Consensus 82 v~LA~~a~dlVd~hirrLD~dl~~~ 106 (259)
|+||+++|++|++|++|||+++++|
T Consensus 81 v~lA~~~~d~v~~hi~rLD~dl~~f 105 (105)
T PF12998_consen 81 VALAQQAYDLVDRHIRRLDQDLKKF 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999887
No 4
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.59 E-value=1.8e-08 Score=67.47 Aligned_cols=40 Identities=50% Similarity=1.276 Sum_probs=32.8
Q ss_pred cc-eeCCCC-CCCceeecCCCCCCcceeeccCcCCcCC----CcccccC
Q psy7929 216 YC-VCQQVS-YGEMIGCDNPDCPIEWFHFACVSLTTKP----KGKWYCP 258 (259)
Q Consensus 216 ~C-~C~~~~-~g~mi~Cd~~~c~~~wfH~~Cv~~~~~~----~~~w~C~ 258 (259)
|| +|+++. .++||.||.|. .|||..|++++..+ .+.|+|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~---~~~H~~C~~~~~~~~~~~~~~w~C~ 46 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCN---RWYHQECVGPPEKAEEIPSGDWYCP 46 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTS---CEEETTTSTSSHSHHSHHSSSBSSH
T ss_pred eCcCCCCcCCCCCeEEcCCCC---hhhCcccCCCChhhccCCCCcEECc
Confidence 68 999965 47799999865 89999999987653 4589997
No 5
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1512|consensus
Probab=97.67 E-value=1.6e-05 Score=70.74 Aligned_cols=40 Identities=35% Similarity=0.759 Sum_probs=34.7
Q ss_pred cc-eeCCCCC-CCceeecCCCCCCcceeeccCcCCcCCCcccccC
Q psy7929 216 YC-VCQQVSY-GEMIGCDNPDCPIEWFHFACVSLTTKPKGKWYCP 258 (259)
Q Consensus 216 ~C-~C~~~~~-g~mi~Cd~~~c~~~wfH~~Cv~~~~~~~~~w~C~ 258 (259)
.| +|.+|.. .+|++||-|+ +. ||.-||||...|.|.|.|.
T Consensus 316 lC~IC~~P~~E~E~~FCD~CD--RG-~HT~CVGL~~lP~G~WICD 357 (381)
T KOG1512|consen 316 LCRICLGPVIESEHLFCDVCD--RG-PHTLCVGLQDLPRGEWICD 357 (381)
T ss_pred hhhccCCcccchheecccccc--CC-CCccccccccccCccchhh
Confidence 46 8999875 6799999965 54 9999999999999999996
No 7
>KOG0954|consensus
Probab=97.43 E-value=4.9e-05 Score=75.06 Aligned_cols=46 Identities=33% Similarity=0.750 Sum_probs=39.5
Q ss_pred CCCCCccc-eeCCCCC---CCceeecCCCCCCcceeeccCcCCcCCCcccccC
Q psy7929 210 DPNEPTYC-VCQQVSY---GEMIGCDNPDCPIEWFHFACVSLTTKPKGKWYCP 258 (259)
Q Consensus 210 ~~~~~~~C-~C~~~~~---g~mi~Cd~~~c~~~wfH~~Cv~~~~~~~~~w~C~ 258 (259)
..+|...| +|+.+.. .+||.||+|+ ...|-.|.||.+.|.|.|.|.
T Consensus 267 e~dedviCDvCrspD~e~~neMVfCd~Cn---~cVHqaCyGIle~p~gpWlCr 316 (893)
T KOG0954|consen 267 EYDEDVICDVCRSPDSEEANEMVFCDKCN---ICVHQACYGILEVPEGPWLCR 316 (893)
T ss_pred eccccceeceecCCCccccceeEEeccch---hHHHHhhhceeecCCCCeeeh
Confidence 34588999 9999863 5799999987 568999999999999999994
No 8
>KOG4299|consensus
Probab=97.25 E-value=0.0001 Score=71.79 Aligned_cols=42 Identities=36% Similarity=1.169 Sum_probs=32.8
Q ss_pred ccc-eeCCCC-CCCceeecCCCCCCcceeeccCcCC----cCCCcccccCC
Q psy7929 215 TYC-VCQQVS-YGEMIGCDNPDCPIEWFHFACVSLT----TKPKGKWYCPK 259 (259)
Q Consensus 215 ~~C-~C~~~~-~g~mi~Cd~~~c~~~wfH~~Cv~~~----~~~~~~w~C~~ 259 (259)
.|| .|++.. |-..|+||. |+.- ||+.|+.-+ ..|.|.|||+.
T Consensus 254 ~fCsaCn~~~~F~~~i~CD~--Cp~s-FH~~CLePPl~~eniP~g~W~C~e 301 (613)
T KOG4299|consen 254 DFCSACNGSGLFNDIICCDG--CPRS-FHQTCLEPPLEPENIPPGSWFCPE 301 (613)
T ss_pred HHHHHhCCccccccceeecC--CchH-HHHhhcCCCCCcccCCCCccccCC
Confidence 499 999984 445699999 6654 999999743 45689999984
No 9
>KOG4323|consensus
Probab=97.17 E-value=0.00013 Score=69.42 Aligned_cols=42 Identities=29% Similarity=0.767 Sum_probs=30.2
Q ss_pred CccceeCCCC-CCCceeecCCCCCCcceeeccCcCCc------CCCcccccC
Q psy7929 214 PTYCVCQQVS-YGEMIGCDNPDCPIEWFHFACVSLTT------KPKGKWYCP 258 (259)
Q Consensus 214 ~~~C~C~~~~-~g~mi~Cd~~~c~~~wfH~~Cv~~~~------~~~~~w~C~ 258 (259)
-.||+|.++. +..||+|+.|. .|||-.|.--.. .|...|||.
T Consensus 171 c~vC~~g~~~~~NrmlqC~~C~---~~fHq~Chqp~i~~~l~~D~~~~w~C~ 219 (464)
T KOG4323|consen 171 CSVCYCGGPGAGNRMLQCDKCR---QWYHQACHQPLIKDELAGDPFYEWFCD 219 (464)
T ss_pred eeeeecCCcCccceeeeecccc---cHHHHHhccCCCCHhhccCccceEeeh
Confidence 4466676665 33699999976 999999986322 234579995
No 10
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=96.98 E-value=0.00021 Score=44.50 Aligned_cols=31 Identities=29% Similarity=0.763 Sum_probs=17.8
Q ss_pred CCceeecCCCCCCcceeeccCcCCcCCCc-ccccC
Q psy7929 225 GEMIGCDNPDCPIEWFHFACVSLTTKPKG-KWYCP 258 (259)
Q Consensus 225 g~mi~Cd~~~c~~~wfH~~Cv~~~~~~~~-~w~C~ 258 (259)
.+||.|++|. -++|.+|.|+...|.+ .|+|.
T Consensus 2 n~ll~C~~C~---v~VH~~CYGv~~~~~~~~W~C~ 33 (36)
T PF13831_consen 2 NPLLFCDNCN---VAVHQSCYGVSEVPDGDDWLCD 33 (36)
T ss_dssp CEEEE-SSS-----EEEHHHHT-SS--SS-----H
T ss_pred CceEEeCCCC---CcCChhhCCcccCCCCCcEECC
Confidence 4689999965 5799999999999876 89995
No 11
>KOG0825|consensus
Probab=96.92 E-value=0.00045 Score=68.90 Aligned_cols=46 Identities=24% Similarity=0.761 Sum_probs=36.9
Q ss_pred CCCccc-eeCCCCCCC-ceeecCCCCCCcceeeccCcC--CcCCCcccccCC
Q psy7929 212 NEPTYC-VCQQVSYGE-MIGCDNPDCPIEWFHFACVSL--TTKPKGKWYCPK 259 (259)
Q Consensus 212 ~~~~~C-~C~~~~~g~-mi~Cd~~~c~~~wfH~~Cv~~--~~~~~~~w~C~~ 259 (259)
.+..-| +|..+..-+ ||.||.|+ ...||..|+.. .+.|.+.|||++
T Consensus 213 ~E~~~C~IC~~~DpEdVLLLCDsCN--~~~YH~YCLDPdl~eiP~~eWYC~N 262 (1134)
T KOG0825|consen 213 QEEVKCDICTVHDPEDVLLLCDSCN--KVYYHVYCLDPDLSESPVNEWYCTN 262 (1134)
T ss_pred cccccceeeccCChHHhheeecccc--cceeeccccCcccccccccceecCc
Confidence 455668 999887654 99999976 56699999985 568899999984
No 12
>KOG1244|consensus
Probab=96.47 E-value=0.0019 Score=57.30 Aligned_cols=43 Identities=33% Similarity=0.903 Sum_probs=34.5
Q ss_pred CCccc-eeCCCCC-CCceeecCCCCCCcceeeccCc--CCcCCCcccccC
Q psy7929 213 EPTYC-VCQQVSY-GEMIGCDNPDCPIEWFHFACVS--LTTKPKGKWYCP 258 (259)
Q Consensus 213 ~~~~C-~C~~~~~-g~mi~Cd~~~c~~~wfH~~Cv~--~~~~~~~~w~C~ 258 (259)
|-.|| +|+-..+ .++++||.|+ +. ||..|+. |.++|.|.|-|.
T Consensus 280 eck~csicgtsenddqllfcddcd--rg-yhmyclsppm~eppegswsc~ 326 (336)
T KOG1244|consen 280 ECKYCSICGTSENDDQLLFCDDCD--RG-YHMYCLSPPMVEPPEGSWSCH 326 (336)
T ss_pred ecceeccccCcCCCceeEeecccC--Cc-eeeEecCCCcCCCCCCchhHH
Confidence 45678 8877764 5699999855 54 9999988 788899999883
No 13
>KOG0955|consensus
Probab=96.30 E-value=0.0024 Score=66.59 Aligned_cols=45 Identities=24% Similarity=0.667 Sum_probs=35.5
Q ss_pred CCCc-cceeCCCC-C--CCceeecCCCCCCcceeeccCcCCcCCCcccccCC
Q psy7929 212 NEPT-YCVCQQVS-Y--GEMIGCDNPDCPIEWFHFACVSLTTKPKGKWYCPK 259 (259)
Q Consensus 212 ~~~~-~C~C~~~~-~--g~mi~Cd~~~c~~~wfH~~Cv~~~~~~~~~w~C~~ 259 (259)
+++. +|+|.... . ...|.||+|+ --+|..|+|++..|.|.|+|.+
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD~Cn---l~VHq~Cygi~~ipeg~WlCr~ 265 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCDGCN---LAVHQECYGIPFIPEGQWLCRR 265 (1051)
T ss_pred CCCccceeecccccCCCceEEEcCCCc---chhhhhccCCCCCCCCcEeehh
Confidence 3444 45998875 3 4599999976 4499999999999999999963
No 14
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=95.75 E-value=0.0037 Score=59.63 Aligned_cols=42 Identities=29% Similarity=0.740 Sum_probs=34.1
Q ss_pred ccc-eeCCCCC---CCceeecCCCCCCcceeeccCcCCcCCCcccccCC
Q psy7929 215 TYC-VCQQVSY---GEMIGCDNPDCPIEWFHFACVSLTTKPKGKWYCPK 259 (259)
Q Consensus 215 ~~C-~C~~~~~---g~mi~Cd~~~c~~~wfH~~Cv~~~~~~~~~w~C~~ 259 (259)
..| +|..... ...|.||||+ + -.|-+|.|+.-.|.|+|+|.+
T Consensus 194 ~~C~~c~~t~~eN~naiVfCdgC~--i-~VHq~CYGI~f~peG~WlCrk 239 (669)
T COG5141 194 DICTKCTSTHNENSNAIVFCDGCE--I-CVHQSCYGIQFLPEGFWLCRK 239 (669)
T ss_pred hhhHhccccccCCcceEEEecCcc--h-hhhhhcccceecCcchhhhhh
Confidence 357 8887764 3489999976 3 489999999999999999953
No 15
>KOG0383|consensus
Probab=95.23 E-value=0.0075 Score=60.56 Aligned_cols=41 Identities=39% Similarity=1.084 Sum_probs=32.9
Q ss_pred Cccc-eeCCCCCCCceeecCCCCCCcceeeccCcC--CcCCCcccccCC
Q psy7929 214 PTYC-VCQQVSYGEMIGCDNPDCPIEWFHFACVSL--TTKPKGKWYCPK 259 (259)
Q Consensus 214 ~~~C-~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~~--~~~~~~~w~C~~ 259 (259)
..+| +|... |+.|+||- |+ .|||+.|.+. +..|.+.|.|++
T Consensus 47 ~e~c~ic~~~--g~~l~c~t--C~-~s~h~~cl~~pl~~~p~~~~~c~R 90 (696)
T KOG0383|consen 47 QEACRICADG--GELLWCDT--CP-ASFHASCLGPPLTPQPNGEFICPR 90 (696)
T ss_pred hhhhhhhcCC--CcEEEecc--cc-HHHHHHccCCCCCcCCccceeeee
Confidence 4455 99988 99999998 66 8999999984 455666799985
No 16
>KOG1245|consensus
Probab=94.90 E-value=0.0061 Score=65.76 Aligned_cols=44 Identities=34% Similarity=0.852 Sum_probs=36.0
Q ss_pred CCccc-eeCCCCCC-CceeecCCCCCCcceeeccCc--CCcCCCcccccCC
Q psy7929 213 EPTYC-VCQQVSYG-EMIGCDNPDCPIEWFHFACVS--LTTKPKGKWYCPK 259 (259)
Q Consensus 213 ~~~~C-~C~~~~~g-~mi~Cd~~~c~~~wfH~~Cv~--~~~~~~~~w~C~~ 259 (259)
....| +|+.-..- .|+.|+.|+ .|||.-|+. +...|.+.|+||.
T Consensus 1107 ~~~~c~~cr~k~~~~~m~lc~~c~---~~~h~~C~rp~~~~~~~~dW~C~~ 1154 (1404)
T KOG1245|consen 1107 VNALCKVCRRKKQDEKMLLCDECL---SGFHLFCLRPALSSVPPGDWMCPS 1154 (1404)
T ss_pred chhhhhhhhhcccchhhhhhHhhh---hhHHHHhhhhhhccCCcCCccCCc
Confidence 35578 88777543 699999987 899999977 7778899999984
No 17
>KOG1632|consensus
Probab=94.83 E-value=0.011 Score=54.94 Aligned_cols=40 Identities=33% Similarity=0.737 Sum_probs=33.0
Q ss_pred cceeCCCCCC--CceeecCCCCCCcceeecc--CcCCcC--C-CcccccC
Q psy7929 216 YCVCQQVSYG--EMIGCDNPDCPIEWFHFAC--VSLTTK--P-KGKWYCP 258 (259)
Q Consensus 216 ~C~C~~~~~g--~mi~Cd~~~c~~~wfH~~C--v~~~~~--~-~~~w~C~ 258 (259)
||.|..+... .|++||.|. .|||..| ||++.. | ...|||.
T Consensus 62 ~~~~~~~~~p~~~~~~cd~C~---~~~~~ec~~v~~~~~e~p~~~~~~c~ 108 (345)
T KOG1632|consen 62 YCKCYKPCDPDDLMEQCDLCE---DWYHGECWEVGTAEKEAPKEDPKVCD 108 (345)
T ss_pred hhhcccccCchhhhhcccccc---ccccccccccCchhhcCCcccccccc
Confidence 9999888764 799999965 8999999 998653 3 5689995
No 18
>KOG0957|consensus
Probab=91.92 E-value=0.19 Score=48.49 Aligned_cols=48 Identities=33% Similarity=0.850 Sum_probs=31.8
Q ss_pred CCCCCCC-ccceeCC---CCCCCceeecCCCCCCcceeeccCcCCc---CC-------CcccccC
Q psy7929 208 PVDPNEP-TYCVCQQ---VSYGEMIGCDNPDCPIEWFHFACVSLTT---KP-------KGKWYCP 258 (259)
Q Consensus 208 ~~~~~~~-~~C~C~~---~~~g~mi~Cd~~~c~~~wfH~~Cv~~~~---~~-------~~~w~C~ 258 (259)
+..|-.. .+|+|-. +.-|+.|+||+|. +- .|-.|.|+.. .| ...|||.
T Consensus 113 ~Sapkk~~iCcVClg~rs~da~ei~qCd~CG--i~-VHEgCYGv~dn~si~s~~s~~stepWfCe 174 (707)
T KOG0957|consen 113 PSAPKKAVICCVCLGQRSVDAGEILQCDKCG--IN-VHEGCYGVLDNVSIPSGSSDCSTEPWFCE 174 (707)
T ss_pred cCccccceEEEEeecCccccccceeeccccC--ce-ecccccccccccccCCCCccCCCCchhhh
Confidence 3344444 5569933 2358999999965 44 8999999652 22 2469995
No 19
>KOG0957|consensus
Probab=91.34 E-value=4.6 Score=39.30 Aligned_cols=40 Identities=33% Similarity=0.868 Sum_probs=29.7
Q ss_pred cc-eeCCCCC-CCceeecCCCCCCcceeeccCc--CCcCCCc----ccccC
Q psy7929 216 YC-VCQQVSY-GEMIGCDNPDCPIEWFHFACVS--LTTKPKG----KWYCP 258 (259)
Q Consensus 216 ~C-~C~~~~~-g~mi~Cd~~~c~~~wfH~~Cv~--~~~~~~~----~w~C~ 258 (259)
-| +|.+... --.+.||-|. . -||..|+. |+..|+. -|.|.
T Consensus 546 sCgiCkks~dQHll~~CDtC~--l-hYHlGCL~PPLTR~Pkk~kn~gWqCs 593 (707)
T KOG0957|consen 546 SCGICKKSTDQHLLTQCDTCH--L-HYHLGCLSPPLTRLPKKNKNFGWQCS 593 (707)
T ss_pred eeeeeccchhhHHHhhcchhh--c-eeeccccCCccccCcccccCcceeec
Confidence 48 9988754 3488999854 4 49999998 7777743 49995
No 20
>KOG2752|consensus
Probab=89.47 E-value=0.18 Score=45.91 Aligned_cols=31 Identities=32% Similarity=0.868 Sum_probs=24.2
Q ss_pred CCccceeCCCCC-------CCceeecCCCCCCccee-eccCc
Q psy7929 213 EPTYCVCQQVSY-------GEMIGCDNPDCPIEWFH-FACVS 246 (259)
Q Consensus 213 ~~~~C~C~~~~~-------g~mi~Cd~~~c~~~wfH-~~Cv~ 246 (259)
+..||.|..++. |.|++|--|. .||| -.|..
T Consensus 127 qG~~C~Cd~~Ypdp~~~~e~~m~QC~iCE---DWFHce~c~~ 165 (345)
T KOG2752|consen 127 QGLFCKCDTPYPDPVRTEEGEMLQCVICE---DWFHCEGCMQ 165 (345)
T ss_pred cceeEEecCCCCCccccccceeeeEEecc---chhcccccCc
Confidence 467999998875 5699999865 9999 55543
No 21
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=88.29 E-value=0.26 Score=36.30 Aligned_cols=30 Identities=37% Similarity=1.010 Sum_probs=25.1
Q ss_pred ccc-eeCCCCCCCceeecCCCCCCcceeeccCc
Q psy7929 215 TYC-VCQQVSYGEMIGCDNPDCPIEWFHFACVS 246 (259)
Q Consensus 215 ~~C-~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~ 246 (259)
..| +|++. .|-.|.|....|. .+||+.|.-
T Consensus 37 ~~C~~C~~~-~Ga~i~C~~~~C~-~~fH~~CA~ 67 (90)
T PF13771_consen 37 LKCSICKKK-GGACIGCSHPGCS-RSFHVPCAR 67 (90)
T ss_pred CCCcCCCCC-CCeEEEEeCCCCC-cEEChHHHc
Confidence 457 89877 7889999998898 679999964
No 22
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=87.59 E-value=12 Score=29.50 Aligned_cols=102 Identities=16% Similarity=0.273 Sum_probs=70.1
Q ss_pred hhcccHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHH---HHHhcCCCChhHHH-HHH--HHHHHHHHHHHHhhHHHHH
Q psy7929 13 LDSLPIELQRNFTLMRELDSRAQDVMKTI---DRVAED---YLDNMKHYSKDKKK-ETL--AEIQKYFDKTKEYGDDKVQ 83 (259)
Q Consensus 13 ie~LP~El~r~l~~irelD~~~~~~~~~i---~~~~~~---~~~~~~~~~~~~~~-~~~--~~I~~~~~~~~~l~dEKv~ 83 (259)
+.+||.+++..+.....|-.+++.+..+. +..+.. -+.....++.+... +.. .-|.....++..-.++++.
T Consensus 1 ~~~lpp~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E 80 (119)
T COG1382 1 MEQLPPEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKE 80 (119)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHH
Confidence 36899999999999999988888776553 333332 22223334433221 100 1245567777777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 84 LAIQTYEMVDKYIRKLDTDLARFEQEIQEKA 114 (259)
Q Consensus 84 LA~~a~dlVd~hirrLD~dl~~~e~el~~~~ 114 (259)
.-.-=...+++..++|+..++.+...|...+
T Consensus 81 ~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 81 TLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888889999999999999988887754
No 23
>KOG1632|consensus
Probab=86.74 E-value=0.1 Score=48.57 Aligned_cols=47 Identities=28% Similarity=0.545 Sum_probs=33.7
Q ss_pred CCCCCccc-eeCCCCC--CCceeecCCCCCCcceeeccCcCCcCCC---cc----cccCC
Q psy7929 210 DPNEPTYC-VCQQVSY--GEMIGCDNPDCPIEWFHFACVSLTTKPK---GK----WYCPK 259 (259)
Q Consensus 210 ~~~~~~~C-~C~~~~~--g~mi~Cd~~~c~~~wfH~~Cv~~~~~~~---~~----w~C~~ 259 (259)
++.+..+| .|+.... -.||+|+-+. .|||..||.+..+++ .. ++||+
T Consensus 235 ~~~~~~~~~~cg~~~~~~~~~~~~~~~e---~w~~~~~v~~~~a~~~~~~~~~~~~~c~~ 291 (345)
T KOG1632|consen 235 PDYSKLICDPCGLSDANKKFEICCDLCE---SWFHGDCVQIFEARKRLNEIRNEVYKCPH 291 (345)
T ss_pred cccccccccccCcchHHHHHHHHHHHHH---HHhcccccccccchhhhhhhhccceecCc
Confidence 44456778 5555432 3599999866 899999999988772 23 77764
No 24
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=85.24 E-value=0.41 Score=36.74 Aligned_cols=31 Identities=32% Similarity=0.822 Sum_probs=25.1
Q ss_pred Cccc-eeCCCCCCCceeecCCCCCCcceeeccCc
Q psy7929 214 PTYC-VCQQVSYGEMIGCDNPDCPIEWFHFACVS 246 (259)
Q Consensus 214 ~~~C-~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~ 246 (259)
...| +|++. .|-.|.|...+|. .+||..|.-
T Consensus 55 ~~~C~iC~~~-~G~~i~C~~~~C~-~~fH~~CA~ 86 (110)
T PF13832_consen 55 KLKCSICGKS-GGACIKCSHPGCS-TAFHPTCAR 86 (110)
T ss_pred CCcCcCCCCC-CceeEEcCCCCCC-cCCCHHHHH
Confidence 3456 99887 6889999998887 679999954
No 25
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=82.51 E-value=18 Score=31.82 Aligned_cols=71 Identities=14% Similarity=0.274 Sum_probs=37.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy7929 19 ELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGDDKVQLAIQTY 89 (259)
Q Consensus 19 El~r~l~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~dEKv~LA~~a~ 89 (259)
+|.+.+..|.+....+..++...-..++.|+...-.+..++|...+..+...+..+.--.-||+.-.-.+|
T Consensus 88 ~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~~dv~~~ek~r~vlea~ 158 (251)
T PF11932_consen 88 SLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEERQERLARLRAMLDDADVSLAEKFRRVLEAY 158 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHH
Confidence 33333333333344444444444455556666444555566666667777776666655556654443333
No 26
>PF13341 RAG2_PHD: RAG2 PHD domain; PDB: 2JWO_A 2V86_B 2V85_B 2V87_A 2V83_C 2V89_A 2V88_A.
Probab=80.25 E-value=0.68 Score=32.94 Aligned_cols=31 Identities=29% Similarity=0.720 Sum_probs=18.4
Q ss_pred CceeecCCCCCCcceeeccCcCCcCC-------CcccccC
Q psy7929 226 EMIGCDNPDCPIEWFHFACVSLTTKP-------KGKWYCP 258 (259)
Q Consensus 226 ~mi~Cd~~~c~~~wfH~~Cv~~~~~~-------~~~w~C~ 258 (259)
-||.|.+.+ -.|.|..|..|++.- ..++||-
T Consensus 29 AMI~cs~~~--GHWvhaqCm~LsE~~L~~LSq~n~KYfC~ 66 (78)
T PF13341_consen 29 AMIFCSRGG--GHWVHAQCMDLSETMLIQLSQENTKYFCN 66 (78)
T ss_dssp -EEEE-STT---EEEETGGGT--HHHHHHHHHSSS-B--T
T ss_pred eEEEEeCCC--ceEeEeecccchHHHHHHHccCCceEEEh
Confidence 499999764 599999999987643 4578885
No 27
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=80.21 E-value=24 Score=27.03 Aligned_cols=46 Identities=13% Similarity=0.176 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 67 IQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQE 112 (259)
Q Consensus 67 I~~~~~~~~~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el~~ 112 (259)
|......+..--.+++.........+++.+..|...+..++..+..
T Consensus 61 v~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 61 VKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred heecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777778888888888888888888777665
No 28
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=79.70 E-value=30 Score=34.11 Aligned_cols=29 Identities=14% Similarity=0.184 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 85 AIQTYEMVDKYIRKLDTDLARFEQEIQEK 113 (259)
Q Consensus 85 A~~a~dlVd~hirrLD~dl~~~e~el~~~ 113 (259)
...|.+++..|+..|..-+++..+++...
T Consensus 290 ~SkAvevM~qhvenLkr~~~kehaeL~E~ 318 (538)
T PF05781_consen 290 VSKAVEVMIQHVENLKRMYEKEHAELEEL 318 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999888888887663
No 29
>PRK09343 prefoldin subunit beta; Provisional
Probab=78.15 E-value=31 Score=27.07 Aligned_cols=101 Identities=14% Similarity=0.274 Sum_probs=64.5
Q ss_pred hcccHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHH---HHhcCCCChhHHH-HHH--HHHHHHHHHHHHhhHHHHHH
Q psy7929 14 DSLPIELQRNFTLMRELDSRAQDVMKTIDRV---AEDY---LDNMKHYSKDKKK-ETL--AEIQKYFDKTKEYGDDKVQL 84 (259)
Q Consensus 14 e~LP~El~r~l~~irelD~~~~~~~~~i~~~---~~~~---~~~~~~~~~~~~~-~~~--~~I~~~~~~~~~l~dEKv~L 84 (259)
.+||.+|+..+..+..+-.+++.+...+... +... ++....++++.+. ..+ --|.....++..--.+++..
T Consensus 3 ~~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ 82 (121)
T PRK09343 3 ENIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKEL 82 (121)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHH
Confidence 3688888888888888877777666554322 2221 2222234433332 111 12566777777777888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 85 AIQTYEMVDKYIRKLDTDLARFEQEIQEKA 114 (259)
Q Consensus 85 A~~a~dlVd~hirrLD~dl~~~e~el~~~~ 114 (259)
...-...+++....|...+..++..+...+
T Consensus 83 ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 83 LELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777888888888888888887777643
No 30
>PF10796 Anti-adapt_IraP: Sigma-S stabilisation anti-adaptor protein ; InterPro: IPR019732 This entry is conserved in Enterobacteriaceae. It is one of a series of proteins, expressed by these bacteria in response to stress, that help to regulate Sigma-S, the stationary phase sigma factor of Escherichia coli and Salmonella. IraP is essential for Sigma-S stabilisation in some but not all starvation conditions []. ; GO: 0005737 cytoplasm
Probab=77.32 E-value=22 Score=26.49 Aligned_cols=77 Identities=12% Similarity=0.286 Sum_probs=52.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy7929 20 LQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKL 99 (259)
Q Consensus 20 l~r~l~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~dEKv~LA~~a~dlVd~hirrL 99 (259)
|...|-.|-++|+...++..+++.+---...-...+.+..+.+++..|...+..+..-.++=.. --.+++.+|+++|
T Consensus 5 i~~lL~KlA~~e~esKeL~AqVEAleivitALL~~l~~~~~~~~i~~I~~Ai~~a~~~~~~~~~---sd~eLL~~~~~~L 81 (87)
T PF10796_consen 5 IAELLAKLAEKEAESKELTAQVEALEIVITALLRTLDQGGRQEMIESIEKAIEDASPSSDVPLK---SDAELLLQYVKKL 81 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHhcccCCccch---HHHHHHHHHHHHH
Confidence 4556788889999999999998766333222233556677888999999999888876655322 1345566666554
No 31
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=77.03 E-value=30 Score=26.33 Aligned_cols=79 Identities=11% Similarity=0.204 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHHHH------HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHH
Q psy7929 23 NFTLMRELDSRAQDVMKTI------DRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTK-EYGDDKVQLAIQTYEMVDKY 95 (259)
Q Consensus 23 ~l~~irelD~~~~~~~~~i------~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~-~l~dEKv~LA~~a~dlVd~h 95 (259)
-|+++++|..++..+...+ .+.+..++..-...++..|+ .+..+...+-.-. .+..||..+... |...
T Consensus 7 ~~~~l~DL~~rYs~L~s~lkKfkq~q~~I~q~L~eRA~~d~kaRE-~l~rLd~aFP~G~~~~~qE~~k~m~~----i~~~ 81 (107)
T PRK15365 7 AFSEYRDLEQSYMQLNHCLKKFHQIRAKVSQQLAERAESPKKSRE-TESILHNLFPQGVAGVNQEAEKDLKK----IVSL 81 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCcchhhHHhHHHHHHHHH----HHHH
Confidence 4789999999888765543 44454556655555555444 4445666664433 556777554433 3355
Q ss_pred HHHHHHHHHHH
Q psy7929 96 IRKLDTDLARF 106 (259)
Q Consensus 96 irrLD~dl~~~ 106 (259)
-++|+..|+.+
T Consensus 82 FKQLEt~LKnl 92 (107)
T PRK15365 82 FKQLEVRLKQL 92 (107)
T ss_pred HHHHHHHHHhc
Confidence 55555555544
No 32
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=76.58 E-value=25 Score=31.41 Aligned_cols=67 Identities=22% Similarity=0.362 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh--hHHH-HHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHH
Q psy7929 25 TLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSK--DKKK-ETLAEIQKYFDKTKEYGDD-KVQLAIQTYEMVDK 94 (259)
Q Consensus 25 ~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~-~~~~~I~~~~~~~~~l~dE-Kv~LA~~a~dlVd~ 94 (259)
.+|+++|.++......+......-.. ...+ ..+. .+-.+|...+.++-.++.+ +|.-|+.+...|+.
T Consensus 90 ~~i~d~drrI~~~k~RL~~~~~~~~~---~~~~~~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~ 160 (254)
T PF03194_consen 90 RLIRDCDRRIERAKERLEQTQEEQAK---EADEEKAEKIDELDEKIGELLKEAEELGEEGDVDEAQKLMEEVEK 160 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccccc---chhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45555666655555554432221111 1111 1222 3446899999999999998 99999988888776
No 33
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=74.31 E-value=12 Score=29.09 Aligned_cols=54 Identities=26% Similarity=0.461 Sum_probs=44.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy7929 54 HYSKDKKKETLAEIQKYFDKTKEYGDDKVQLAIQTYEM-VDKYIRKLDTDLARFE 107 (259)
Q Consensus 54 ~~~~~~~~~~~~~I~~~~~~~~~l~dEKv~LA~~a~dl-Vd~hirrLD~dl~~~e 107 (259)
.+++.++++...-|+..-.+-+++.+|+-.|..++.+| |++-++.|+++-..-+
T Consensus 31 ~~~~kd~~ea~~F~~kV~~qH~~~~~e~r~L~kKi~~l~veRkmr~Les~p~~W~ 85 (109)
T PF11690_consen 31 HLPSKDKKEAYDFIDKVVDQHQRYCDERRKLRKKIQDLRVERKMRALESHPFDWE 85 (109)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHH
Confidence 35556677777778888888899999999999999997 9999999998765544
No 34
>KOG0994|consensus
Probab=73.93 E-value=41 Score=36.42 Aligned_cols=43 Identities=21% Similarity=0.116 Sum_probs=24.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 68 QKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEI 110 (259)
Q Consensus 68 ~~~~~~~~~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el 110 (259)
.+...++++.+|+-...|+.+..-++.-|+...+.|.+.+++.
T Consensus 1565 ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t 1607 (1758)
T KOG0994|consen 1565 AEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEET 1607 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3344555555555556666666666666665555555555444
No 35
>KOG1473|consensus
Probab=70.49 E-value=2.9 Score=44.27 Aligned_cols=38 Identities=32% Similarity=0.958 Sum_probs=29.9
Q ss_pred cc-eeCCCCCCCceeecCCCCCCcceeeccCc--CCcCCCcccccC
Q psy7929 216 YC-VCQQVSYGEMIGCDNPDCPIEWFHFACVS--LTTKPKGKWYCP 258 (259)
Q Consensus 216 ~C-~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~--~~~~~~~~w~C~ 258 (259)
.| +|+.. |..+||.+ |++. +|..||. +-..|...|-|.
T Consensus 346 hcrf~~d~--~~~lc~Et--~prv-vhlEcv~hP~~~~~s~~~e~e 386 (1414)
T KOG1473|consen 346 HCRFCHDL--GDLLCCET--CPRV-VHLECVFHPRFAVPSAFWECE 386 (1414)
T ss_pred cccccCcc--cceeeccc--CCce-EEeeecCCccccCCCccchhh
Confidence 58 99988 99999998 7765 8999997 334556678773
No 36
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=69.83 E-value=40 Score=29.68 Aligned_cols=40 Identities=10% Similarity=0.214 Sum_probs=28.8
Q ss_pred HHhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 11 DSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLD 50 (259)
Q Consensus 11 d~ie~LP~El~r~l~~irelD~~~~~~~~~i~~~~~~~~~ 50 (259)
..++-+=.+|...+..++..+.-+.++.++++.+..++..
T Consensus 11 ~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~ 50 (230)
T PF10146_consen 11 LELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMA 50 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556777777777777788888888888777776655
No 37
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=68.08 E-value=67 Score=26.41 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy7929 66 EIQKYFDKTKEYGDDKVQLAIQTYEMVDK 94 (259)
Q Consensus 66 ~I~~~~~~~~~l~dEKv~LA~~a~dlVd~ 94 (259)
+....+...-+..+||.+|+..+.+||..
T Consensus 113 Eykealea~nEknkeK~~Lv~~L~eLv~e 141 (159)
T PF04949_consen 113 EYKEALEAFNEKNKEKAQLVTRLMELVSE 141 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566667889999999999999975
No 38
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=67.76 E-value=32 Score=30.75 Aligned_cols=65 Identities=12% Similarity=0.086 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHhcC----------CCChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 37 VMKTIDRVAEDYLDNMK----------HYSKDKKKETLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDT 101 (259)
Q Consensus 37 ~~~~i~~~~~~~~~~~~----------~~~~~~~~~~~~~I~~~~~~~~~l~dEKv~LA~~a~dlVd~hirrLD~ 101 (259)
.+.+||.++...+++.. ..+.....+....|.+.+.+.+..++.|..++.+|.+-+++-|+|++.
T Consensus 27 ~l~~iD~k~~d~~k~l~q~~si~k~~~~~~~~t~~e~ed~l~k~i~Ell~~a~~~~~~~~~l~d~~~~l~~Rh~~ 101 (271)
T COG5034 27 ELSEIDAKVCDIIKNLRQMISILKKIIDLDSQTYEEVEDGLLKEIRELLLKAIYIQKEKSDLADRAEKLLRRHRK 101 (271)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhcccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555444332 233444557778899999999999999999999999999999999988
No 39
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=66.95 E-value=73 Score=26.43 Aligned_cols=100 Identities=13% Similarity=0.265 Sum_probs=56.2
Q ss_pred HHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHH---HHHHHHHHHHHHHHHhhHHHHHH
Q psy7929 8 QYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKK---ETLAEIQKYFDKTKEYGDDKVQL 84 (259)
Q Consensus 8 dfld~ie~LP~El~r~l~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~I~~~~~~~~~l~dEKv~L 84 (259)
+.++..++-=.|+.+.-.+|.++-..+.....++|.+-..+......+..-.+. -.-..|...|.+|..++-+..-+
T Consensus 17 qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~ 96 (159)
T PF05384_consen 17 QIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAML 96 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555566666677777777777777777776655544322211111111 12246888888888888776666
Q ss_pred HHHHHHH------HHHHHHHHHHHHHHHH
Q psy7929 85 AIQTYEM------VDKYIRKLDTDLARFE 107 (259)
Q Consensus 85 A~~a~dl------Vd~hirrLD~dl~~~e 107 (259)
-++-..| +++.+++|..-+++-+
T Consensus 97 re~E~qLr~rRD~LErrl~~l~~tierAE 125 (159)
T PF05384_consen 97 REREKQLRERRDELERRLRNLEETIERAE 125 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655554 4444444444444333
No 40
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=65.30 E-value=1.8 Score=25.34 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=10.8
Q ss_pred cc-eeCCCCCC-CceeecCCCCCCcceeeccC
Q psy7929 216 YC-VCQQVSYG-EMIGCDNPDCPIEWFHFACV 245 (259)
Q Consensus 216 ~C-~C~~~~~g-~mi~Cd~~~c~~~wfH~~Cv 245 (259)
.| .|+.+.++ .+-.|..|+ -++|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cd---f~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECD---FDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT--------HHHH
T ss_pred cCCcCCCcCCCCceEECccCC---CccChhcC
Confidence 36 78888777 677798855 56898885
No 41
>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....
Probab=65.03 E-value=45 Score=23.32 Aligned_cols=86 Identities=16% Similarity=0.278 Sum_probs=36.5
Q ss_pred hHHHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHhhHHHH-H
Q psy7929 5 YLEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGDDKV-Q 83 (259)
Q Consensus 5 yLedfld~ie~LP~El~r~l~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~dEKv-~ 83 (259)
+++.|++.+...-..|...+ ..++ ..-...+...++++--..+.+.-. .+..+-..+.....-.+..- .
T Consensus 2 ll~~f~~~~~~~~~~l~~~~---~~~~---~~d~~~l~~~~H~lkG~a~~~g~~----~l~~~~~~lE~~~~~~~~~~~~ 71 (90)
T PF01627_consen 2 LLDIFLEEAPEDLEQLEQAL---QALE---QEDWEELRRLAHRLKGSAGNLGAP----RLAELAEQLEQALKSGDKPEAE 71 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---CSSH---HCHHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHTTHHHHSH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHh---HhhHHHHHHHHHHHhhhHHhcCHH----HHHHHHHHHHHHHHcCCccchh
Confidence 45666665554333333322 1111 233333444444443333323222 23334444444443333333 4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy7929 84 LAIQTYEMVDKYIRKLD 100 (259)
Q Consensus 84 LA~~a~dlVd~hirrLD 100 (259)
+..++++.|...+.+|.
T Consensus 72 ~~~~~~~~l~~~l~~l~ 88 (90)
T PF01627_consen 72 ELEQLLDELEAMLEQLR 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 55555555555555543
No 42
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=64.98 E-value=71 Score=25.59 Aligned_cols=33 Identities=6% Similarity=0.198 Sum_probs=18.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 18 IELQRNFTLMRELDSRAQDVMKTIDRVAEDYLD 50 (259)
Q Consensus 18 ~El~r~l~~irelD~~~~~~~~~i~~~~~~~~~ 50 (259)
.|=...-..||+.|..+..+...+.+..+.|-+
T Consensus 49 ~~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k 81 (131)
T PF10158_consen 49 FDQNALAKRIKEVDQEIAKLLQQMVERQKRFAK 81 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455666666666666666555555433
No 43
>KOG4443|consensus
Probab=64.52 E-value=4 Score=40.86 Aligned_cols=41 Identities=24% Similarity=0.645 Sum_probs=28.3
Q ss_pred ccc-eeCCCC-CCCceeecCCCCCCcceeeccCc--CCcCCCcccccC
Q psy7929 215 TYC-VCQQVS-YGEMIGCDNPDCPIEWFHFACVS--LTTKPKGKWYCP 258 (259)
Q Consensus 215 ~~C-~C~~~~-~g~mi~Cd~~~c~~~wfH~~Cv~--~~~~~~~~w~C~ 258 (259)
..| -|+... .+....|+.|+ .-||..|.. .+..|.|.|+|+
T Consensus 69 rvCe~c~~~gD~~kf~~Ck~cD---vsyh~yc~~P~~~~v~sg~~~ck 113 (694)
T KOG4443|consen 69 RVCEACGTTGDPKKFLLCKRCD---VSYHCYCQKPPNDKVPSGPWLCK 113 (694)
T ss_pred eeeeeccccCCccccccccccc---ccccccccCCccccccCcccccH
Confidence 345 555332 24577788866 449999987 556778999997
No 44
>PRK10869 recombination and repair protein; Provisional
Probab=64.27 E-value=54 Score=32.56 Aligned_cols=7 Identities=29% Similarity=0.572 Sum_probs=2.8
Q ss_pred cceeCCC
Q psy7929 216 YCVCQQV 222 (259)
Q Consensus 216 ~C~C~~~ 222 (259)
.|+-+.+
T Consensus 487 i~iTH~~ 493 (553)
T PRK10869 487 MCVTHLP 493 (553)
T ss_pred EEEecCH
Confidence 3433443
No 45
>KOG4552|consensus
Probab=63.55 E-value=1e+02 Score=26.89 Aligned_cols=87 Identities=11% Similarity=0.177 Sum_probs=44.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 22 RNFTLMRELDSRAQDVMKTID-RVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLD 100 (259)
Q Consensus 22 r~l~~irelD~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~dEKv~LA~~a~dlVd~hirrLD 100 (259)
|.|..+-+|+.-+.++.+.+. ..-++.++ ++.. ..-.+++..=...+++.++++.|--. ..++.+.++.|+.+=|
T Consensus 12 rLL~~~dDlE~i~kelie~l~~~~~qk~l~-~gE~--v~il~Ll~~kd~ef~~llkla~eq~k-~e~~m~~Lea~VEkrD 87 (272)
T KOG4552|consen 12 RLLESADDLEHIVKELIETLINRDKQKMLK-NGET--VNILKLLDSKDDEFKTLLKLAPEQQK-REQLMRTLEAHVEKRD 87 (272)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhhhHHHHHh-cchH--HHHHHHHHhccHHHHHHHHHhHhHHH-HHHHHHHHHHHHHHhH
Confidence 455566666666666655542 22333333 2211 12223443334555555555554322 2455566667777767
Q ss_pred HHHHHHHHHHHH
Q psy7929 101 TDLARFEQEIQE 112 (259)
Q Consensus 101 ~dl~~~e~el~~ 112 (259)
.+|.+|+..+..
T Consensus 88 ~~IQqLqk~LK~ 99 (272)
T KOG4552|consen 88 EVIQQLQKNLKS 99 (272)
T ss_pred HHHHHHHHHHHH
Confidence 766666655543
No 46
>PHA02562 46 endonuclease subunit; Provisional
Probab=62.47 E-value=1e+02 Score=30.11 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=11.3
Q ss_pred cHHHHHhHHHHHHHHHHHHHHHHHH
Q psy7929 17 PIELQRNFTLMRELDSRAQDVMKTI 41 (259)
Q Consensus 17 P~El~r~l~~irelD~~~~~~~~~i 41 (259)
|..+...-..|.+|..++..+...+
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i 322 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAI 322 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433
No 47
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=62.00 E-value=86 Score=25.52 Aligned_cols=37 Identities=11% Similarity=0.202 Sum_probs=22.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 71 FDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFE 107 (259)
Q Consensus 71 ~~~~~~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e 107 (259)
++...--...-|.+-+.+++.....|.+|++++..++
T Consensus 95 ~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~ 131 (146)
T PF08702_consen 95 LETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQQE 131 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455556666666666666777777666554
No 48
>KOG4360|consensus
Probab=60.76 E-value=1.4e+02 Score=29.44 Aligned_cols=77 Identities=16% Similarity=0.257 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 25 TLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLA 104 (259)
Q Consensus 25 ~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~dEKv~LA~~a~dlVd~hirrLD~dl~ 104 (259)
.++|++..++..+.++|..+..+..... ++.-.++.+|-+.-.+++.+.-||-.+...+..++|+| +.|..++.
T Consensus 205 KelrdtN~q~~s~~eel~~kt~el~~q~-----Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~-~ql~aE~~ 278 (596)
T KOG4360|consen 205 KELRDTNTQARSGQEELQSKTKELSRQQ-----EENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQ-RQLTAELE 278 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHH
Confidence 4455555555555555555555443311 12235778888888999999999999999999998885 45555554
Q ss_pred HHH
Q psy7929 105 RFE 107 (259)
Q Consensus 105 ~~e 107 (259)
.++
T Consensus 279 Ele 281 (596)
T KOG4360|consen 279 ELE 281 (596)
T ss_pred HHH
Confidence 443
No 49
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=60.09 E-value=2.3 Score=31.18 Aligned_cols=32 Identities=31% Similarity=0.953 Sum_probs=23.2
Q ss_pred ccc-eeCCCCCCCceeecC-----CCCCCcc------eeeccCc
Q psy7929 215 TYC-VCQQVSYGEMIGCDN-----PDCPIEW------FHFACVS 246 (259)
Q Consensus 215 ~~C-~C~~~~~g~mi~Cd~-----~~c~~~w------fH~~Cv~ 246 (259)
..| +|+-...|.-+.|-. .+|+..| ||+.|+.
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~ 64 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIY 64 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHH
Confidence 357 888877776666654 3477766 9999986
No 50
>PRK10244 anti-RssB factor; Provisional
Probab=59.84 E-value=71 Score=23.85 Aligned_cols=74 Identities=11% Similarity=0.285 Sum_probs=49.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy7929 20 LQRNFTLMRELDSRAQDVMKTIDRV---AEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYI 96 (259)
Q Consensus 20 l~r~l~~irelD~~~~~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~dEKv~LA~~a~dlVd~hi 96 (259)
|...|-.|-+.|+...++..+++.+ +...+. .+.++....+...|+..+..+.+-.++ +-..-.+++-.|+
T Consensus 5 I~elL~KlA~ke~esKeL~AQVEAlellitAlL~---~~~~~~~~~li~~Ie~Ai~~a~~~~~~---~~~~D~eLL~~~v 78 (88)
T PRK10244 5 IAELLAKLAQKEEESKELTAQVEALELLVTAMLR---TMGKNGQQELIEQVEGAINAVSKPDDS---VPDSDTELLLTYV 78 (88)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HhChhhHHHHHHHHHHHHHHhcccccc---ccchHHHHHHHHH
Confidence 3455677888999999999998765 344444 455566667778888888777554443 2234456666777
Q ss_pred HHH
Q psy7929 97 RKL 99 (259)
Q Consensus 97 rrL 99 (259)
+||
T Consensus 79 ~~L 81 (88)
T PRK10244 79 NKL 81 (88)
T ss_pred HHH
Confidence 665
No 51
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=59.56 E-value=1.2e+02 Score=26.32 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy7929 63 TLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDK 94 (259)
Q Consensus 63 ~~~~I~~~~~~~~~l~dEKv~LA~~a~dlVd~ 94 (259)
.+......|.....-+.+|+..|+.-++-|-+
T Consensus 126 ~l~~~eqry~aLK~hAeekL~~ANeei~~v~~ 157 (207)
T PF05010_consen 126 RLKKEEQRYQALKAHAEEKLEKANEEIAQVRS 157 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778888889999999999887776654
No 52
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=58.29 E-value=84 Score=24.22 Aligned_cols=63 Identities=14% Similarity=0.274 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHH
Q psy7929 28 RELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTK-EYGDDKVQLAIQTYEMVDK 94 (259)
Q Consensus 28 relD~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~-~l~dEKv~LA~~a~dlVd~ 94 (259)
-+|...++++...++ +.++..++...++-.++..+|+..+.++. .+++-+=.+++++.+.++.
T Consensus 11 ~~l~~el~~L~d~lE----evL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~ 74 (104)
T COG4575 11 DQLLAELQELLDTLE----EVLKSSGSLAGDEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADA 74 (104)
T ss_pred HHHHHHHHHHHHHHH----HHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 344444444444444 56666666666666666677777776665 3444445555555555443
No 53
>KOG4460|consensus
Probab=58.26 E-value=1.1e+02 Score=30.60 Aligned_cols=35 Identities=29% Similarity=0.420 Sum_probs=26.3
Q ss_pred hhHHHHHHHhhcccHHHHHhHHHHHHH-HHHHHHHH
Q psy7929 4 SYLEQYLDSLDSLPIELQRNFTLMREL-DSRAQDVM 38 (259)
Q Consensus 4 ~yLedfld~ie~LP~El~r~l~~irel-D~~~~~~~ 38 (259)
.+-|+|+..-+-+-.||+|+..+|... |.+.|++.
T Consensus 570 vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~ 605 (741)
T KOG4460|consen 570 VFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLS 605 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466889988888889999998888654 55555543
No 54
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=57.08 E-value=1.8e+02 Score=27.55 Aligned_cols=44 Identities=27% Similarity=0.395 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 66 EIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEI 110 (259)
Q Consensus 66 ~I~~~~~~~~~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el 110 (259)
.|.+.+.++.++ .+|-.-++.+..-|.+-|++||.-=.++-..+
T Consensus 65 ~i~~L~~~i~~i-k~kA~~sE~~V~~it~dIk~LD~AKrNLT~SI 108 (383)
T PF04100_consen 65 AIQELFEKISEI-KSKAEESEQMVQEITRDIKQLDNAKRNLTQSI 108 (383)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433 34555667788888888998887655554443
No 55
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=56.82 E-value=82 Score=23.63 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy7929 80 DKVQLAIQTYEMVDKYIRKLDT 101 (259)
Q Consensus 80 EKv~LA~~a~dlVd~hirrLD~ 101 (259)
+|..-...-.+-+..++.+|..
T Consensus 72 ~~~~~l~~q~~~l~~~l~~l~~ 93 (127)
T smart00502 72 NKLKVLEQQLESLTQKQEKLSH 93 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444433
No 56
>KOG3579|consensus
Probab=56.53 E-value=9.5 Score=34.61 Aligned_cols=51 Identities=27% Similarity=0.746 Sum_probs=35.1
Q ss_pred CCCCCCCCCccc-eeCCCC-CCCceeecCCCCCCcceeeccCc--CCcC-CCcccccC
Q psy7929 206 DMPVDPNEPTYC-VCQQVS-YGEMIGCDNPDCPIEWFHFACVS--LTTK-PKGKWYCP 258 (259)
Q Consensus 206 ~~~~~~~~~~~C-~C~~~~-~g~mi~Cd~~~c~~~wfH~~Cv~--~~~~-~~~~w~C~ 258 (259)
+...-++.++.| +|+.-. +--+|+|-. -++.=|-|.|-. |+.. ..|..|||
T Consensus 260 ~s~~A~~apLcCTLC~ERLEDTHFVQCPS--Vp~HKFCFPCSResIK~Qg~sgevYCP 315 (352)
T KOG3579|consen 260 DSGAAPSAPLCCTLCHERLEDTHFVQCPS--VPSHKFCFPCSRESIKQQGASGEVYCP 315 (352)
T ss_pred ccccCCCCceeehhhhhhhccCceeecCC--CcccceecccCHHHHHhhcCCCceeCC
Confidence 445667889999 997654 445888876 445558888865 4332 35789998
No 57
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=56.33 E-value=74 Score=23.00 Aligned_cols=70 Identities=13% Similarity=0.157 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 39 KTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQ 108 (259)
Q Consensus 39 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~ 108 (259)
+++.+.+..++.....+..+-....-..++..+.+..-...|=..+-..+..-.-..|..|+..++.||+
T Consensus 9 d~~~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 9 DDLAKQISEALPAAQGPREEIEKNIRARLQSALSKLDLVTREEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444443322222222223344555666666666677777777777777777777777776663
No 58
>KOG1937|consensus
Probab=55.73 E-value=1.9e+02 Score=28.16 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHH
Q psy7929 95 YIRKLDTDLARFE 107 (259)
Q Consensus 95 hirrLD~dl~~~e 107 (259)
.||+.++||.++-
T Consensus 397 niRKq~~DI~Kil 409 (521)
T KOG1937|consen 397 NIRKQEQDIVKIL 409 (521)
T ss_pred HHHHHHHHHHHHH
Confidence 4666666665554
No 59
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=55.67 E-value=70 Score=24.43 Aligned_cols=81 Identities=14% Similarity=0.275 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-------HHHHHhhHHHH---HHHHHHHHHH
Q psy7929 23 NFTLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYF-------DKTKEYGDDKV---QLAIQTYEMV 92 (259)
Q Consensus 23 ~l~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~-------~~~~~l~dEKv---~LA~~a~dlV 92 (259)
.|.--+--|+.|..+..+|...-. ....+ ...+.+|...| .++..+-.++- .=++|+.++|
T Consensus 3 sL~hWq~w~aEYe~LKEEi~~l~~-----~~~~~----~e~l~~i~r~f~g~lv~~kEi~~ilG~~~~i~Rt~~Qvv~~l 73 (99)
T PF13758_consen 3 SLYHWQTWEAEYEGLKEEIEALPE-----DDDAT----REDLLRIRRDFGGSLVTEKEIKEILGEGQGITRTREQVVDVL 73 (99)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccc-----cCCCC----HHHHHHHHHhcCcccccHHHHHHHhCCCCCCCcCHHHHHHHH
Confidence 344456678888888888875522 00000 11222333333 12222222211 3468888999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy7929 93 DKYIRKLDTDLARFEQEIQE 112 (259)
Q Consensus 93 d~hirrLD~dl~~~e~el~~ 112 (259)
+|.|..+...+..|+..+..
T Consensus 74 ~RRiDYV~~Ni~tleKql~~ 93 (99)
T PF13758_consen 74 SRRIDYVQQNIETLEKQLEA 93 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888877665
No 60
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=54.87 E-value=7.7 Score=30.30 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=19.8
Q ss_pred HHHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy7929 6 LEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTID 42 (259)
Q Consensus 6 Ledfld~ie~LP~El~r~l~~irelD~~~~~~~~~i~ 42 (259)
+++||+.|. .++.+...++.+|..++..+..++.
T Consensus 23 VD~fl~~l~---~~~~~l~~e~~~L~~~~~~l~~~l~ 56 (131)
T PF05103_consen 23 VDDFLDELA---EELERLQRENAELKEEIEELQAQLE 56 (131)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHCCCCT--
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 567777666 5666666666666666655544443
No 61
>KOG1844|consensus
Probab=54.79 E-value=11 Score=36.53 Aligned_cols=43 Identities=30% Similarity=0.569 Sum_probs=32.1
Q ss_pred CCccceeCCCC--CCCceeecCCCCCCcceeeccCcCCcCC-CcccccC
Q psy7929 213 EPTYCVCQQVS--YGEMIGCDNPDCPIEWFHFACVSLTTKP-KGKWYCP 258 (259)
Q Consensus 213 ~~~~C~C~~~~--~g~mi~Cd~~~c~~~wfH~~Cv~~~~~~-~~~w~C~ 258 (259)
+..-|.|.... .|.||+|+.|. .|=|.-|+|....- ...+.|.
T Consensus 85 ~~~~c~c~~~~~~~g~~i~c~~c~---~Wqh~~C~g~~~~~~p~~y~c~ 130 (508)
T KOG1844|consen 85 EISRCDCGLEDDMEGLMIQCDWCG---RWQHKICCGSFKSTKPDKYVCE 130 (508)
T ss_pred cccccccccccCCCceeeCCcccC---cccCceeeeecCCCCchhceee
Confidence 56679997764 57899999965 89999999965433 3566664
No 62
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=54.20 E-value=1.1e+02 Score=24.54 Aligned_cols=57 Identities=18% Similarity=0.272 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcCCC--ChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy7929 42 DRVAEDYLDNMKHY--SKDKKKETLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRK 98 (259)
Q Consensus 42 ~~~~~~~~~~~~~~--~~~~~~~~~~~I~~~~~~~~~l~dEKv~LA~~a~dlVd~hirr 98 (259)
.+.|..+|...+.+ +++...+.++++...+..+-.--.++|.-+..++..|+.-|+.
T Consensus 82 akqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~~ 140 (144)
T PF11221_consen 82 AKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQELIRE 140 (144)
T ss_dssp HHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777664 4555557777788888888777788888888777777766653
No 63
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=54.02 E-value=68 Score=26.44 Aligned_cols=34 Identities=35% Similarity=0.522 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 77 YGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEI 110 (259)
Q Consensus 77 l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el 110 (259)
.-|+.-.+-.++..+.++++..+|.-++.-+.++
T Consensus 131 s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekel 164 (165)
T PF01765_consen 131 SEDDIKKLEKEIQKLTDKYIKKIDELLKKKEKEL 164 (165)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3355566667888888899999988887776654
No 64
>KOG1671|consensus
Probab=52.65 E-value=6.3 Score=33.83 Aligned_cols=18 Identities=39% Similarity=1.112 Sum_probs=14.6
Q ss_pred eeccCcCCcCC-CcccccC
Q psy7929 241 HFACVSLTTKP-KGKWYCP 258 (259)
Q Consensus 241 H~~Cv~~~~~~-~~~w~C~ 258 (259)
|+.||-+-.+. .|.||||
T Consensus 155 hLGCVp~~~AGd~gg~~CP 173 (210)
T KOG1671|consen 155 HLGCVPIANAGDYGGYYCP 173 (210)
T ss_pred cccccccccccccCceecc
Confidence 88999876655 5789998
No 65
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=52.09 E-value=1.7e+02 Score=25.93 Aligned_cols=76 Identities=8% Similarity=0.170 Sum_probs=0.0
Q ss_pred ccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy7929 16 LPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDKY 95 (259)
Q Consensus 16 LP~El~r~l~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~dEKv~LA~~a~dlVd~h 95 (259)
++......|-.|..||.....+...+......+-+ ++..+..+..--.++ +..++-|++.
T Consensus 1 ~m~~~~~~L~~iq~lD~e~~rl~~~~~~~~~~l~k----------------~~~e~e~~~~~~~~~----~~e~e~le~q 60 (239)
T COG1579 1 MMNNNLKSLLAIQKLDLEKDRLEPRIKEIRKALKK----------------AKAELEALNKALEAL----EIELEDLENQ 60 (239)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH----------------HHHHHHHHHHHHHHH----HHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q psy7929 96 IRKLDTDLARFEQEIQ 111 (259)
Q Consensus 96 irrLD~dl~~~e~el~ 111 (259)
+.+++.+|..+..-+.
T Consensus 61 v~~~e~ei~~~r~r~~ 76 (239)
T COG1579 61 VSQLESEIQEIRERIK 76 (239)
T ss_pred HHHHHHHHHHHHHHHH
No 66
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=51.95 E-value=1.7e+02 Score=25.84 Aligned_cols=83 Identities=17% Similarity=0.292 Sum_probs=44.1
Q ss_pred hcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCChhHHHHHHHHHHHHHHHH--------HHhhHHHH
Q psy7929 14 DSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMK---HYSKDKKKETLAEIQKYFDKT--------KEYGDDKV 82 (259)
Q Consensus 14 e~LP~El~r~l~~irelD~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~I~~~~~~~--------~~l~dEKv 82 (259)
..|-.+..+.+....+|+..+..+...|...+.+...-.. .++...-...+.+++..+.++ ...+++=.
T Consensus 76 ~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El 155 (264)
T PF06008_consen 76 QQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDEL 155 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 3344445555555666666666666666555555433222 333333334444444444443 45666666
Q ss_pred HHHHHHHHHHHHHH
Q psy7929 83 QLAIQTYEMVDKYI 96 (259)
Q Consensus 83 ~LA~~a~dlVd~hi 96 (259)
.-|+.+++-|.+..
T Consensus 156 ~~A~~LL~~v~~~~ 169 (264)
T PF06008_consen 156 KEAEDLLSRVQKWF 169 (264)
T ss_pred HHHHHHHHHHHHHH
Confidence 67777776666654
No 67
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=51.90 E-value=1e+02 Score=23.25 Aligned_cols=96 Identities=11% Similarity=0.247 Sum_probs=56.7
Q ss_pred HHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHH-HHH--HHHHHHHHHHHHhhHHHHHHH
Q psy7929 9 YLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKK-ETL--AEIQKYFDKTKEYGDDKVQLA 85 (259)
Q Consensus 9 fld~ie~LP~El~r~l~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~--~~I~~~~~~~~~l~dEKv~LA 85 (259)
.+..+..|-.+++.....++.|+....+...-++.. . .++++.+. ..+ .-|.....++...-++++...
T Consensus 4 ~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL-----~---~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~l 75 (105)
T cd00632 4 QLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEEL-----E---KLADDAEVYKLVGNVLVKQEKEEARTELKERLETI 75 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H---cCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHH
Confidence 344444455555555566666665555544333321 1 12122111 000 125666677777778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 86 IQTYEMVDKYIRKLDTDLARFEQEIQE 112 (259)
Q Consensus 86 ~~a~dlVd~hirrLD~dl~~~e~el~~ 112 (259)
....+-++..+..|...+..++..+..
T Consensus 76 e~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 76 ELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888877653
No 68
>PF06464 DMAP_binding: DMAP1-binding Domain; InterPro: IPR010506 This domain binds DMAP1, a transcriptional co-repressor.; GO: 0008134 transcription factor binding, 0005634 nucleus
Probab=51.07 E-value=28 Score=26.98 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=16.4
Q ss_pred hhcccHHHHHhHHHHHHHHHHHHH
Q psy7929 13 LDSLPIELQRNFTLMRELDSRAQD 36 (259)
Q Consensus 13 ie~LP~El~r~l~~irelD~~~~~ 36 (259)
+..||.||+ ..+++||.++.+
T Consensus 2 ~s~LP~evq---~~L~~L~~el~~ 22 (111)
T PF06464_consen 2 PSSLPPEVQ---NRLQELDLELEE 22 (111)
T ss_pred cccCCHHHH---HHHHHHHHhhhc
Confidence 568999999 677788877654
No 69
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=50.82 E-value=85 Score=26.38 Aligned_cols=33 Identities=30% Similarity=0.509 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 79 DDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQ 111 (259)
Q Consensus 79 dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el~ 111 (259)
|+--.+-.++..+.|+++.++|.-++.-|.|+.
T Consensus 142 D~~k~~~~~iQkltd~~i~~id~~~~~Kekeim 174 (176)
T TIGR00496 142 DEERRLQEEIQKLTDEYIKKIDEILKDKEKELM 174 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455556677888889999999998888887764
No 70
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=50.45 E-value=15 Score=23.96 Aligned_cols=34 Identities=29% Similarity=0.553 Sum_probs=24.0
Q ss_pred CCccc-eeCCCC---CCCceeecCCCCCCcceeeccCcCCc
Q psy7929 213 EPTYC-VCQQVS---YGEMIGCDNPDCPIEWFHFACVSLTT 249 (259)
Q Consensus 213 ~~~~C-~C~~~~---~g~mi~Cd~~~c~~~wfH~~Cv~~~~ 249 (259)
.+.+| +|+..- ....+.|..|. + -+|-.|+....
T Consensus 10 ~~~~C~~C~~~i~g~~~~g~~C~~C~--~-~~H~~C~~~~~ 47 (53)
T PF00130_consen 10 KPTYCDVCGKFIWGLGKQGYRCSWCG--L-VCHKKCLSKVP 47 (53)
T ss_dssp STEB-TTSSSBECSSSSCEEEETTTT----EEETTGGCTSS
T ss_pred CCCCCcccCcccCCCCCCeEEECCCC--C-hHhhhhhhhcC
Confidence 47789 999886 34678899854 4 59999987543
No 71
>KOG3047|consensus
Probab=50.31 E-value=1.3e+02 Score=24.15 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 67 IQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQ 111 (259)
Q Consensus 67 I~~~~~~~~~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el~ 111 (259)
++-.++.+++..|.|+.+-..+.+-+.+-..+|.++|-.+-+-+.
T Consensus 99 lElkLadAiKf~DRK~dlLkel~ekLqKdsmkiKa~ihMLLagl~ 143 (157)
T KOG3047|consen 99 LELKLADAIKFCDRKMDLLKELMEKLQKDSMKIKADIHMLLAGLD 143 (157)
T ss_pred eeehHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Confidence 445677899999999999999999999999899888876655443
No 72
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=49.55 E-value=1.4e+02 Score=29.65 Aligned_cols=45 Identities=16% Similarity=0.232 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 62 ETLAEIQKYFDKTKEYGDD-KVQLAIQTYEMVDKYIRKLDTDLARF 106 (259)
Q Consensus 62 ~~~~~I~~~~~~~~~l~dE-Kv~LA~~a~dlVd~hirrLD~dl~~~ 106 (259)
..+..|...|.+..++... =..=|..++.-+..++..|...+..+
T Consensus 168 ~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~I 213 (560)
T PF06160_consen 168 KQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDI 213 (560)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666655554 44456666666666666666655443
No 73
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=49.29 E-value=5.1 Score=25.65 Aligned_cols=26 Identities=31% Similarity=0.865 Sum_probs=12.6
Q ss_pred eeCCCC-CCCceeecCCCCCCcceeeccCc
Q psy7929 218 VCQQVS-YGEMIGCDNPDCPIEWFHFACVS 246 (259)
Q Consensus 218 ~C~~~~-~g~mi~Cd~~~c~~~wfH~~Cv~ 246 (259)
+|...- .| +.|.+.+|... +|..|+.
T Consensus 3 ~C~~iv~~G--~~C~~~~C~~r-~H~~C~~ 29 (43)
T PF08746_consen 3 ACKEIVTQG--QRCSNRDCNVR-LHDDCFK 29 (43)
T ss_dssp TT-SB-SSS--EE-SS--S--E-E-HHHHH
T ss_pred ccchhHeee--ccCCCCccCch-HHHHHHH
Confidence 454442 34 67998889988 5999986
No 74
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=49.27 E-value=2.6e+02 Score=30.37 Aligned_cols=51 Identities=18% Similarity=0.275 Sum_probs=46.1
Q ss_pred hhHHHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy7929 4 SYLEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMKH 54 (259)
Q Consensus 4 ~yLedfld~ie~LP~El~r~l~~irelD~~~~~~~~~i~~~~~~~~~~~~~ 54 (259)
.||.+....|+.|-.|+=++++.|+..-....+.+.+++..-++-|+.++.
T Consensus 1179 Ayl~eitKqIsaLe~e~PKnltdvK~missf~d~laeiE~LrnErIKkHGa 1229 (1439)
T PF12252_consen 1179 AYLVEITKQISALEKEKPKNLTDVKSMISSFNDRLAEIEFLRNERIKKHGA 1229 (1439)
T ss_pred HHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHhhhhHHHHHHHHHhhccCC
Confidence 588888889999999999999999999999999999999988888888774
No 75
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=47.32 E-value=2.5e+02 Score=27.42 Aligned_cols=26 Identities=8% Similarity=0.318 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 87 QTYEMVDKYIRKLDTDLARFEQEIQE 112 (259)
Q Consensus 87 ~a~dlVd~hirrLD~dl~~~e~el~~ 112 (259)
-|++++.+--...++++-.|..++..
T Consensus 478 SALdlLkrEKe~~EqefLslqeEfQk 503 (527)
T PF15066_consen 478 SALDLLKREKETREQEFLSLQEEFQK 503 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666555555543
No 76
>PRK11637 AmiB activator; Provisional
Probab=46.72 E-value=2.6e+02 Score=26.53 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 80 DKVQLAIQTYEMVDKYIRKLDTDLARFEQE 109 (259)
Q Consensus 80 EKv~LA~~a~dlVd~hirrLD~dl~~~e~e 109 (259)
+++.-.++-...+++.|..|+.+|..++.+
T Consensus 89 ~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 89 RKLRETQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444433
No 77
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=46.38 E-value=1.9e+02 Score=24.69 Aligned_cols=104 Identities=13% Similarity=0.190 Sum_probs=0.0
Q ss_pred hHHHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy7929 5 YLEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGDDKVQL 84 (259)
Q Consensus 5 yLedfld~ie~LP~El~r~l~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~dEKv~L 84 (259)
.|++||..++.-=.+++..+..+.-.-.++..-..++...+.+|-......-..-+.. +......-+.-.++.+.-
T Consensus 27 ~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~ed----LAr~al~~k~~~e~~~~~ 102 (221)
T PF04012_consen 27 MLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGRED----LAREALQRKADLEEQAER 102 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH----HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 85 AIQTYEMVDKYIRKLDTDLARFEQEIQE 112 (259)
Q Consensus 85 A~~a~dlVd~hirrLD~dl~~~e~el~~ 112 (259)
..+.++....++.+|...|..++..+..
T Consensus 103 l~~~~~~~~~~~~~l~~~l~~l~~kl~e 130 (221)
T PF04012_consen 103 LEQQLDQAEAQVEKLKEQLEELEAKLEE 130 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 78
>PRK14127 cell division protein GpsB; Provisional
Probab=46.05 E-value=80 Score=24.53 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=22.0
Q ss_pred HHHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 6 LEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVA 45 (259)
Q Consensus 6 Ledfld~ie~LP~El~r~l~~irelD~~~~~~~~~i~~~~ 45 (259)
+++|||.|. .++.....++.+|-.+...+..++....
T Consensus 28 VD~FLd~V~---~dye~l~~e~~~Lk~e~~~l~~~l~e~~ 64 (109)
T PRK14127 28 VDKFLDDVI---KDYEAFQKEIEELQQENARLKAQVDELT 64 (109)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666665 4666666666666666666555555433
No 79
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=45.98 E-value=1.4e+02 Score=23.14 Aligned_cols=52 Identities=8% Similarity=0.245 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy7929 40 TIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDK 94 (259)
Q Consensus 40 ~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~dEKv~LA~~a~dlVd~ 94 (259)
++...+..+.+ -|.+++++-++....|.+..+......++| +-.++-++++.
T Consensus 25 k~~klvDelVk-kGeln~eEak~~vddl~~q~k~~~~e~e~K--~~r~i~~ml~~ 76 (108)
T COG3937 25 KVQKLVDELVK-KGELNAEEAKRFVDDLLRQAKEAQGELEEK--IPRKIEEMLSD 76 (108)
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHhhhHHHh--hhHHHHHHHhh
Confidence 34444445544 466888877777777777777777777777 44555555554
No 80
>KOG0412|consensus
Probab=45.97 E-value=3.5e+02 Score=27.98 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=30.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcCCCC
Q psy7929 18 IELQRNFTLMRELDSRAQDVMKT---IDRVAEDYLDNMKHYS 56 (259)
Q Consensus 18 ~El~r~l~~irelD~~~~~~~~~---i~~~~~~~~~~~~~~~ 56 (259)
.|+.+.++.|+++|..++.+..+ ++..+..++.+...+.
T Consensus 24 ~eli~d~t~i~qi~~~le~~~~ee~~~~~~L~~lL~q~~~ie 65 (773)
T KOG0412|consen 24 GELIRDLTDISQIDLLLERIAREEARVDKDLEALLSQQQTIE 65 (773)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 46788889999999999988766 6778888887655443
No 81
>COG3404 Methenyl tetrahydrofolate cyclohydrolase [Amino acid transport and metabolism]
Probab=45.87 E-value=2e+02 Score=24.86 Aligned_cols=84 Identities=8% Similarity=0.176 Sum_probs=57.2
Q ss_pred hhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy7929 13 LDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNM--KHYSKDKKKETLAEIQKYFDKTKEYGDDKVQLAIQTYE 90 (259)
Q Consensus 13 ie~LP~El~r~l~~irelD~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~I~~~~~~~~~l~dEKv~LA~~a~d 90 (259)
.++.-.|...+|.++.++-..+..+.++=..-...++... +.-+.+++......|+..+..+.+.=-+=+.++-++.+
T Consensus 52 Y~~~d~e~k~i~~~~~~ik~~l~~lidkD~eAf~~im~AyKlPK~teEEK~~R~~~lQ~Alk~Aa~vP~~ia~~~~~~l~ 131 (208)
T COG3404 52 YEDYDDEMKEILEELQKIKAELLALIDKDEEAFNLIMAAYKLPKSTEEEKAARRKALQNALKEAAKVPLDIATLMVDLLE 131 (208)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 3455577777888888888888877777655555555543 34456667777778999998888766666666666666
Q ss_pred HHHHHH
Q psy7929 91 MVDKYI 96 (259)
Q Consensus 91 lVd~hi 96 (259)
++..-.
T Consensus 132 l~e~l~ 137 (208)
T COG3404 132 LLEKLV 137 (208)
T ss_pred HHHHHH
Confidence 555543
No 82
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=45.39 E-value=55 Score=24.68 Aligned_cols=31 Identities=19% Similarity=0.362 Sum_probs=14.4
Q ss_pred HHHHHHhhcccHHHHHhHHHHHHHHHHHHHH
Q psy7929 7 EQYLDSLDSLPIELQRNFTLMRELDSRAQDV 37 (259)
Q Consensus 7 edfld~ie~LP~El~r~l~~irelD~~~~~~ 37 (259)
..+++.+...=.+|+.++..|-++|.++..+
T Consensus 48 ~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~L 78 (99)
T PF10046_consen 48 EKNLEDLNQKYEELQPYLQQIDQIEEQVTEL 78 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 83
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=45.02 E-value=1.1e+02 Score=25.79 Aligned_cols=30 Identities=37% Similarity=0.461 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 82 VQLAIQTYEMVDKYIRKLDTDLARFEQEIQ 111 (259)
Q Consensus 82 v~LA~~a~dlVd~hirrLD~dl~~~e~el~ 111 (259)
-.+-..+..+.|+++.++|.-++.-|.|+.
T Consensus 154 k~~e~eiQkltd~~i~~id~~~~~Kekeim 183 (185)
T PRK00083 154 KRAEDEIQKLTDKYIKKIDELLAAKEKEIM 183 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444567778888999999998888877764
No 84
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=44.68 E-value=2e+02 Score=24.67 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=24.1
Q ss_pred ccHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy7929 16 LPIELQRNFTLMRELDSRAQDVMKTIDRV 44 (259)
Q Consensus 16 LP~El~r~l~~irelD~~~~~~~~~i~~~ 44 (259)
=+.|..|.=.++.+||.++..........
T Consensus 94 ~dwEevrLkrELa~Le~~l~~~~~~~~~~ 122 (195)
T PF12761_consen 94 TDWEEVRLKRELAELEEKLSKVEQAAESR 122 (195)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34599999999999999999888877654
No 85
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=44.60 E-value=2e+02 Score=24.57 Aligned_cols=86 Identities=20% Similarity=0.308 Sum_probs=46.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHhhHHHHHHHH--HHHHHHHHH
Q psy7929 21 QRNFTLMRELDSRAQDVMKTIDR---VAEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGDDKVQLAI--QTYEMVDKY 95 (259)
Q Consensus 21 ~r~l~~irelD~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~dEKv~LA~--~a~dlVd~h 95 (259)
.-+|.+|+.|-.++.++...... .+......+..+. +|-.....++...-.....+..+|..|++ .-+..+++.
T Consensus 23 ~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~-epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~ 101 (201)
T PF13851_consen 23 LNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLS-EPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKE 101 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777766665432 2223333222222 23334444555555666667777777665 334445666
Q ss_pred HHHHHHHHHHHH
Q psy7929 96 IRKLDTDLARFE 107 (259)
Q Consensus 96 irrLD~dl~~~e 107 (259)
++.|..+.+-++
T Consensus 102 l~~Lk~e~evL~ 113 (201)
T PF13851_consen 102 LKDLKWEHEVLE 113 (201)
T ss_pred HHHHHHHHHHHH
Confidence 666665544443
No 86
>KOG1853|consensus
Probab=44.32 E-value=2.4e+02 Score=25.40 Aligned_cols=8 Identities=25% Similarity=0.522 Sum_probs=4.1
Q ss_pred ccceeCCC
Q psy7929 215 TYCVCQQV 222 (259)
Q Consensus 215 ~~C~C~~~ 222 (259)
.-|+|+.+
T Consensus 286 g~~~~~i~ 293 (333)
T KOG1853|consen 286 GACINRIV 293 (333)
T ss_pred chhhhhhh
Confidence 34666544
No 87
>PHA02562 46 endonuclease subunit; Provisional
Probab=44.22 E-value=3.1e+02 Score=26.67 Aligned_cols=26 Identities=8% Similarity=0.175 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy7929 66 EIQKYFDKTKEYGDDKVQLAIQTYEM 91 (259)
Q Consensus 66 ~I~~~~~~~~~l~dEKv~LA~~a~dl 91 (259)
++.....++..+..+.-.+-..+.++
T Consensus 221 e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 221 KYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445545544554555554
No 88
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=44.20 E-value=2.6e+02 Score=25.78 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Q psy7929 68 QKYFDKTKEYGDDKVQLAIQTYE 90 (259)
Q Consensus 68 ~~~~~~~~~l~dEKv~LA~~a~d 90 (259)
+....++.++.+||++|.+++-.
T Consensus 109 n~L~rkl~qLr~EK~~lE~~Le~ 131 (310)
T PF09755_consen 109 NDLSRKLNQLRQEKVELENQLEQ 131 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45557888999999999998864
No 89
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=44.12 E-value=2.5e+02 Score=25.58 Aligned_cols=39 Identities=13% Similarity=0.388 Sum_probs=30.4
Q ss_pred HhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 12 SLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLD 50 (259)
Q Consensus 12 ~ie~LP~El~r~l~~irelD~~~~~~~~~i~~~~~~~~~ 50 (259)
.|-+|-.-|+.....+.+-|..+.+++.++-+..+.||.
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIE 107 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIE 107 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777888888888888888777888876
No 90
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=43.54 E-value=2.6e+02 Score=25.65 Aligned_cols=51 Identities=22% Similarity=0.251 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 62 ETLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQE 112 (259)
Q Consensus 62 ~~~~~I~~~~~~~~~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el~~ 112 (259)
.++.+|.+-..+++++.+.--.=|..+.-+.|+-.+-=|.+|..|.++|..
T Consensus 204 aLl~EmdkVK~EAmeiL~aRqkkAeeLkrltd~A~~MsE~Ql~ELRadIK~ 254 (302)
T PF07139_consen 204 ALLAEMDKVKAEAMEILDARQKKAEELKRLTDRASQMSEEQLAELRADIKH 254 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 677788887788887777776666666666665444444444444444443
No 91
>PF04668 Tsg: Twisted gastrulation (Tsg) protein conserved region; InterPro: IPR006761 Tsg was identified in Drosophila melanogaster as being required to specify the dorsal-most structures in the embryo, for example the amnioserosa. Biochemical experiments have revealed three key properties of Tsg: it can synergistically inhibit Dpp/BMP action in both D. melanogaster and vertebrates by forming a tripartite complete between itself, SOG/chordin and a BMP ligand; Tsg seems to enhance the Tld/BMP-1-mediated cleavage rate of SOG/chordin and may change the preference of site utilisation; Tsg can promote the dissociation of chordin cysteine-rich-containing fragments from the ligand to inhibit BMP signalling [, ].
Probab=43.17 E-value=8.9 Score=30.80 Aligned_cols=12 Identities=42% Similarity=1.074 Sum_probs=9.0
Q ss_pred CCCcceeecc---Cc
Q psy7929 235 CPIEWFHFAC---VS 246 (259)
Q Consensus 235 c~~~wfH~~C---v~ 246 (259)
-.|+|||-.| ||
T Consensus 100 ssYRWFHdgCCECVG 114 (132)
T PF04668_consen 100 SSYRWFHDGCCECVG 114 (132)
T ss_pred ccceeeccchhhccC
Confidence 4579999955 66
No 92
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=42.85 E-value=1.9e+02 Score=23.81 Aligned_cols=86 Identities=14% Similarity=0.242 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 23 NFTLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTD 102 (259)
Q Consensus 23 ~l~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~dEKv~LA~~a~dlVd~hirrLD~d 102 (259)
.++.++..|..+.....++.+.++.-+. . .++..+.+..|...+.-.-.=-..=|...-.-.|.|++.++.|-+-
T Consensus 32 als~f~AkEeeIErkKmeVrekVq~~Lg---r--veEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~ 106 (159)
T PF04949_consen 32 ALSAFRAKEEEIERKKMEVREKVQAQLG---R--VEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQS 106 (159)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHh---H--HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4667777777777777777766665443 1 1234456777777776555444555677777778888888888777
Q ss_pred HHHHHHHHHHH
Q psy7929 103 LARFEQEIQEK 113 (259)
Q Consensus 103 l~~~e~el~~~ 113 (259)
..+-|.+....
T Consensus 107 cqKKEkEykea 117 (159)
T PF04949_consen 107 CQKKEKEYKEA 117 (159)
T ss_pred HHHHHHHHHHH
Confidence 77766666554
No 93
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=42.81 E-value=1.7e+02 Score=23.29 Aligned_cols=52 Identities=12% Similarity=0.257 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHhhHH
Q psy7929 29 ELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGDD 80 (259)
Q Consensus 29 elD~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~dE 80 (259)
.+..+++....+++....+|......++++.+...-.+|+........+...
T Consensus 47 ~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~ 98 (158)
T PF03938_consen 47 ALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQ 98 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666666667766656778777776666666555555544433
No 94
>KOG4443|consensus
Probab=42.69 E-value=5.5 Score=39.91 Aligned_cols=33 Identities=30% Similarity=0.671 Sum_probs=24.9
Q ss_pred ccc-eeCCCCC----CCceeecCCCCCCcceeeccCcCCcC
Q psy7929 215 TYC-VCQQVSY----GEMIGCDNPDCPIEWFHFACVSLTTK 250 (259)
Q Consensus 215 ~~C-~C~~~~~----g~mi~Cd~~~c~~~wfH~~Cv~~~~~ 250 (259)
.|| +|...+- -.|++|+-|. .|-|..|.|+...
T Consensus 146 ~~cPvc~~~Y~~~e~~~~~~c~~c~---rwsh~~c~~~sdd 183 (694)
T KOG4443|consen 146 SYCPVCLIVYQDSESLPMVCCSICQ---RWSHGGCDGISDD 183 (694)
T ss_pred ccCchHHHhhhhccchhhHHHHHhc---ccccCCCCccchH
Confidence 577 6766653 2389999965 8999999997653
No 95
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=42.60 E-value=23 Score=26.32 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=16.4
Q ss_pred ccc-eeCCCCCCC--ceeecCCCCCCcceeeccC
Q psy7929 215 TYC-VCQQVSYGE--MIGCDNPDCPIEWFHFACV 245 (259)
Q Consensus 215 ~~C-~C~~~~~g~--mi~Cd~~~c~~~wfH~~Cv 245 (259)
..| +|+++-... .+..++ .-||+.|.
T Consensus 79 ~~C~vC~k~l~~~~f~~~p~~-----~v~H~~C~ 107 (109)
T PF10367_consen 79 TKCSVCGKPLGNSVFVVFPCG-----HVVHYSCI 107 (109)
T ss_pred CCccCcCCcCCCceEEEeCCC-----eEEecccc
Confidence 357 999986533 333332 34999997
No 96
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=42.45 E-value=4e+02 Score=27.40 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 60 KKETLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQ 108 (259)
Q Consensus 60 ~~~~~~~I~~~~~~~~~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~ 108 (259)
..+...++...++..+..-.+.|+||-.=.||.+.||.-|+.+++.+..
T Consensus 96 l~e~vsqm~~~vK~~L~~vK~qveiAmE~~EL~~~vlg~l~~EIe~~~~ 144 (683)
T PF08580_consen 96 LIEEVSQMELDVKKTLISVKKQVEIAMEWEELWNDVLGDLDNEIEECIR 144 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456666777788888999999999999999999999998876654
No 97
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=42.39 E-value=12 Score=35.98 Aligned_cols=25 Identities=32% Similarity=0.911 Sum_probs=19.5
Q ss_pred eeCCCCC--C--CceeecCCCCCCcceeeccC
Q psy7929 218 VCQQVSY--G--EMIGCDNPDCPIEWFHFACV 245 (259)
Q Consensus 218 ~C~~~~~--g--~mi~Cd~~~c~~~wfH~~Cv 245 (259)
+|++-.+ + -.|.||.|. .|-|..|.
T Consensus 133 iC~kfD~~~n~~~Wi~Cd~Cg---H~cH~dCA 161 (446)
T PF07227_consen 133 ICSKFDDNKNTCSWIGCDVCG---HWCHLDCA 161 (446)
T ss_pred ccCCcccCCCCeeEEeccCCC---ceehhhhh
Confidence 8888653 2 399999865 89999994
No 98
>KOG1666|consensus
Probab=42.38 E-value=2.3e+02 Score=24.70 Aligned_cols=83 Identities=18% Similarity=0.333 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-----HHHHHHHHHHHHH
Q psy7929 26 LMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGDDKVQLAIQ-----TYEMVDKYIRKLD 100 (259)
Q Consensus 26 ~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~dEKv~LA~~-----a~dlVd~hirrLD 100 (259)
.+-..+.++..+..+|...+...+. ++.++|...+..|...+.++.++-+ ++.+... +--.+...+|.-.
T Consensus 4 ~fe~yEqqy~~l~a~it~k~~~~~~----~~~~ekk~~l~~i~~~leEa~ell~-qMdlEvr~lp~~~Rs~~~~KlR~yk 78 (220)
T KOG1666|consen 4 LFEGYEQQYRELSAEITKKIGRALS----LPGSEKKQLLSEIDSKLEEANELLD-QMDLEVRELPPNFRSSYLSKLREYK 78 (220)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhc----CCchHHHHHHHHHHHhHHHHHHHHH-HHHHHHHhCCchhhhHHHHHHHHHH
Confidence 4556677788887777777766554 4456888899999999999988865 4444432 3455666788888
Q ss_pred HHHHHHHHHHHHH
Q psy7929 101 TDLARFEQEIQEK 113 (259)
Q Consensus 101 ~dl~~~e~el~~~ 113 (259)
++|++|..++...
T Consensus 79 sdl~~l~~e~k~~ 91 (220)
T KOG1666|consen 79 SDLKKLKRELKRT 91 (220)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999888764
No 99
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=42.06 E-value=3e+02 Score=25.85 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 87 QTYEMVDKYIRKLDTDLARFEQEIQEKA 114 (259)
Q Consensus 87 ~a~dlVd~hirrLD~dl~~~e~el~~~~ 114 (259)
.|.++...-|..|+..+..++.++..-+
T Consensus 76 em~ema~~Ei~~~~~~~~~le~~L~~lL 103 (363)
T COG0216 76 EMREMAEEEIKELEAKIEELEEELKILL 103 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6778888889999999999988887643
No 100
>PF00645 zf-PARP: Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region; InterPro: IPR001510 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents PARP (Poly(ADP) polymerase) type zinc finger domains. NAD(+) ADP-ribosyltransferase(2.4.2.30 from EC) [, ] is a eukaryotic enzyme that catalyses the covalent attachment of ADP-ribose units from NAD(+) to various nuclear acceptor proteins. This post-translational modification of nuclear proteins is dependent on DNA. It appears to be involved in the regulation of various important cellular processes such as differentiation, proliferation and tumour transformation as well as in the regulation of the molecular events involved in the recovery of the cell from DNA damage. Structurally, NAD(+) ADP-ribosyltransferase consists of three distinct domains: an N-terminal zinc-dependent DNA-binding domain, a central automodification domain and a C-terminal NAD-binding domain. The DNA-binding region contains a pair of PARP-type zinc finger domains which have been shown to bind DNA in a zinc-dependent manner. The PARP-type zinc finger domains seem to bind specifically to single-stranded DNA and to act as a DNA nick sensor. DNA ligase III [] contains, in its N-terminal section, a single copy of a zinc finger highly similar to those of PARP. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding; PDB: 1UW0_A 3OD8_D 3ODA_A 4AV1_A 2DMJ_A 4DQY_D 2L30_A 2CS2_A 2L31_A 3ODE_B ....
Probab=41.95 E-value=6.8 Score=28.28 Aligned_cols=10 Identities=30% Similarity=1.215 Sum_probs=8.7
Q ss_pred cceeeccCcC
Q psy7929 238 EWFHFACVSL 247 (259)
Q Consensus 238 ~wfH~~Cv~~ 247 (259)
.|||+.|+..
T Consensus 39 ~W~H~~C~~~ 48 (82)
T PF00645_consen 39 KWYHWDCFFK 48 (82)
T ss_dssp EEEEHHHHHH
T ss_pred ceECcccccc
Confidence 8999999863
No 101
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=41.50 E-value=1.4e+02 Score=25.44 Aligned_cols=34 Identities=29% Similarity=0.422 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 78 GDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQ 111 (259)
Q Consensus 78 ~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el~ 111 (259)
.||--..-..+.-+-|.+|.+||.-++.-|.++-
T Consensus 152 EDe~k~~e~~iQKlTd~yi~~iD~~~~~KEkEim 185 (187)
T COG0233 152 EDEVKKAEEEIQKLTDEYIKKIDELLKDKEKEIM 185 (187)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555566667778888888888888777663
No 102
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=41.48 E-value=2.9e+02 Score=28.56 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=7.3
Q ss_pred HHHHHHhhcccHHHHHhHH
Q psy7929 7 EQYLDSLDSLPIELQRNFT 25 (259)
Q Consensus 7 edfld~ie~LP~El~r~l~ 25 (259)
|+|++..+.-=.+|+++..
T Consensus 550 eeYi~~~~~ar~ei~~rv~ 568 (717)
T PF10168_consen 550 EEYIEKQDLAREEIQRRVK 568 (717)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344433333334443333
No 103
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=41.08 E-value=36 Score=22.18 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 83 QLAIQTYEMVDKYIRKLDTDLARFEQE 109 (259)
Q Consensus 83 ~LA~~a~dlVd~hirrLD~dl~~~e~e 109 (259)
.|-+..||-|+..|..||..++.|+.-
T Consensus 8 elLqe~~d~IEqkiedid~qIaeLe~K 34 (46)
T PF08946_consen 8 ELLQEHYDNIEQKIEDIDEQIAELEAK 34 (46)
T ss_dssp -------THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHH
Confidence 455678999999999999999888754
No 104
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=40.30 E-value=3.8e+02 Score=26.55 Aligned_cols=44 Identities=14% Similarity=0.260 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 65 AEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQ 111 (259)
Q Consensus 65 ~~I~~~~~~~~~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el~ 111 (259)
..+.........-+.+|+ .+..+.++.|++.|..-+..|-.++.
T Consensus 386 ~e~~~e~~~~~r~~lekl---~~~q~e~~~~l~~v~eKVd~LpqqI~ 429 (531)
T PF15450_consen 386 SEAKNEWESDERKSLEKL---DQWQNEMEKHLKEVQEKVDSLPQQIE 429 (531)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 344444444444455554 34445566666666665555544443
No 105
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=40.01 E-value=2.6e+02 Score=24.56 Aligned_cols=9 Identities=22% Similarity=0.327 Sum_probs=4.9
Q ss_pred eeCCCCCCC
Q psy7929 218 VCQQVSYGE 226 (259)
Q Consensus 218 ~C~~~~~g~ 226 (259)
.|++--...
T Consensus 199 sC~qqIHRN 207 (230)
T PF10146_consen 199 SCHQQIHRN 207 (230)
T ss_pred hHHHHHhcC
Confidence 666654443
No 106
>PRK10780 periplasmic chaperone; Provisional
Probab=39.93 E-value=2.1e+02 Score=23.41 Aligned_cols=42 Identities=5% Similarity=0.051 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q psy7929 28 RELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQK 69 (259)
Q Consensus 28 relD~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 69 (259)
......+.....++.....+|-+....+++..+...-.+|..
T Consensus 53 ~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~~~~~~~el~~ 94 (165)
T PRK10780 53 KGRASELQRMETDLQAKMQKLQRDGSTMKGSDRTKLEKDVMA 94 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence 334445555556667777788887788888877766555544
No 107
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=38.83 E-value=4.2e+02 Score=26.58 Aligned_cols=24 Identities=13% Similarity=0.408 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 89 YEMVDKYIRKLDTDLARFEQEIQE 112 (259)
Q Consensus 89 ~dlVd~hirrLD~dl~~~e~el~~ 112 (259)
++-.+.|+..|+.++..+..++..
T Consensus 337 L~~~~~~~~~Le~~~~~l~~~~~~ 360 (557)
T COG0497 337 LDNSEESLEALEKEVKKLKAELLE 360 (557)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHH
Confidence 333445666666666666555433
No 108
>KOG0964|consensus
Probab=38.60 E-value=5.4e+02 Score=27.80 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 87 QTYEMVDKYIRKLDTDLARFEQEIQEK 113 (259)
Q Consensus 87 ~a~dlVd~hirrLD~dl~~~e~el~~~ 113 (259)
..++.|..|+..+.+....|++++...
T Consensus 748 ~~Le~i~~~l~~~~~~~~~~e~el~se 774 (1200)
T KOG0964|consen 748 KELEEIKTSLHKLESQSNYFESELGSE 774 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHH
Confidence 344556666677777777777666543
No 109
>PF07011 DUF1313: Protein of unknown function (DUF1313); InterPro: IPR009741 This family consists of several hypothetical plant proteins of around 100 residues in length. The function of this family is unknown.
Probab=38.47 E-value=79 Score=23.50 Aligned_cols=36 Identities=25% Similarity=0.469 Sum_probs=24.5
Q ss_pred cccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 15 SLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLD 50 (259)
Q Consensus 15 ~LP~El~r~l~~irelD~~~~~~~~~i~~~~~~~~~ 50 (259)
-.|.-|.|+..|||||.--+.....-...+-..|.+
T Consensus 39 r~PdnL~RNV~LIrELN~NI~rVv~lY~dLs~sFs~ 74 (87)
T PF07011_consen 39 RIPDNLSRNVGLIRELNGNISRVVDLYSDLSSSFSK 74 (87)
T ss_pred cCCchhhHhHHHHHHHHhhHHHHHHHHHHHhHHHHH
Confidence 468888888888888877766666555555444543
No 110
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=38.38 E-value=2.8e+02 Score=24.44 Aligned_cols=32 Identities=13% Similarity=0.147 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 77 YGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQ 108 (259)
Q Consensus 77 l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~ 108 (259)
-+.+|+.-|..+...+...+..+......+..
T Consensus 203 eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~ 234 (264)
T PF06008_consen 203 EAQNKTREAEDLNRANQKNLEDLEKKKQELSE 234 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457777777777777766666655544443
No 111
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=37.77 E-value=2.6e+02 Score=23.83 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q psy7929 77 YGDDKVQLAIQTYEMVDKYIR 97 (259)
Q Consensus 77 l~dEKv~LA~~a~dlVd~hir 97 (259)
-+++++..|...|+.++.+++
T Consensus 153 kae~~l~~a~~~y~~lN~~Lk 173 (216)
T cd07599 153 KLERKLEEAKEEYEALNELLK 173 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999998875
No 112
>PRK14154 heat shock protein GrpE; Provisional
Probab=37.68 E-value=2.7e+02 Score=24.12 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=9.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy7929 69 KYFDKTKEYGDDKVQLAIQTYEMVDK 94 (259)
Q Consensus 69 ~~~~~~~~l~dEKv~LA~~a~dlVd~ 94 (259)
+....+...+-++ ++..++..+|+
T Consensus 91 kE~e~~~~~a~e~--~~~~LLpVlDn 114 (208)
T PRK14154 91 REKADIIKFGSKQ--LITDLLPVADS 114 (208)
T ss_pred HHHHHHHHHHHHH--HHHHHhhHHhH
Confidence 3333344444333 23344444444
No 113
>PRK00808 hypothetical protein; Provisional
Probab=37.51 E-value=2.2e+02 Score=22.88 Aligned_cols=48 Identities=13% Similarity=0.043 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 63 TLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEI 110 (259)
Q Consensus 63 ~~~~I~~~~~~~~~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el 110 (259)
.+.+|.....+...-.+--..+..-+.+.+-+||...|..+..|-...
T Consensus 83 fl~~l~~l~~~~~~g~~~~~~l~~~L~~WL~~HI~~~D~~~~~~l~~~ 130 (150)
T PRK00808 83 FIKRVEEYRERFQAGEDVADELHGMLSRWLFNHIRNDDAAYVDAVKAN 130 (150)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 345555544444332233345667788889999999999998885443
No 114
>KOG0996|consensus
Probab=37.44 E-value=4.6e+02 Score=28.80 Aligned_cols=47 Identities=30% Similarity=0.488 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 65 AEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQ 111 (259)
Q Consensus 65 ~~I~~~~~~~~~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el~ 111 (259)
.+|.....++..+..+|++.-..=.+-|...|..|.+++.++...+.
T Consensus 885 ~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~ 931 (1293)
T KOG0996|consen 885 ARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIK 931 (1293)
T ss_pred HHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 44555556666667777766666666666666666666666654443
No 115
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=36.42 E-value=14 Score=24.19 Aligned_cols=9 Identities=22% Similarity=0.826 Sum_probs=8.0
Q ss_pred cceeeccCc
Q psy7929 238 EWFHFACVS 246 (259)
Q Consensus 238 ~wfH~~Cv~ 246 (259)
.|||.+|+.
T Consensus 26 ~~vH~~Cl~ 34 (49)
T smart00744 26 KYVHQECLE 34 (49)
T ss_pred hHHHHHHHH
Confidence 799999985
No 116
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=36.20 E-value=3.7e+02 Score=25.28 Aligned_cols=105 Identities=14% Similarity=0.222 Sum_probs=68.7
Q ss_pred HHHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCChh-------HHHHHHHHHHHHHH
Q psy7929 6 LEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNM------KHYSKD-------KKKETLAEIQKYFD 72 (259)
Q Consensus 6 Ledfld~ie~LP~El~r~l~~irelD~~~~~~~~~i~~~~~~~~~~~------~~~~~~-------~~~~~~~~I~~~~~ 72 (259)
+.+..+....|-..+...+.+|.++...+..+.+.|.....- ++-+ +..-|. +...+..++ ..+.
T Consensus 253 i~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~-lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev-~~l~ 330 (384)
T PF03148_consen 253 IHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGP-LKVAQTRLENRTQRPNVELCRDPPQYGLIEEV-KELR 330 (384)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHhhHhcCCchHHHHhhHHHHHHHHH-HHHH
Confidence 344455556677777777788888887777777766544322 1111 111111 122344454 4566
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 73 KTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQE 112 (259)
Q Consensus 73 ~~~~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el~~ 112 (259)
.......+|+.-|...+..+.++..+|+.||..-...+..
T Consensus 331 ~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~~sL~i 370 (384)
T PF03148_consen 331 ESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKNNSLFI 370 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777778999999999999999999999999877766544
No 117
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=36.13 E-value=4.1e+02 Score=27.23 Aligned_cols=75 Identities=16% Similarity=0.136 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh--hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy7929 25 TLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSK--DKKKETLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKL 99 (259)
Q Consensus 25 ~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~I~~~~~~~~~l~dEKv~LA~~a~dlVd~hirrL 99 (259)
..|.+|-.+..++..++.+....|..++..+-. .+...+-.+|.+.+.++....+.-++.+.+-...+.+.+..+
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~ 364 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQL 364 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666555555555555443332211 111123334455455544444444555555555555555554
No 118
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=35.94 E-value=24 Score=27.10 Aligned_cols=49 Identities=27% Similarity=0.558 Sum_probs=29.0
Q ss_pred CCCCCccc-eeCCCCCCCceee----cCCCC---CCcceeeccCcC------Cc-CCCcccccCC
Q psy7929 210 DPNEPTYC-VCQQVSYGEMIGC----DNPDC---PIEWFHFACVSL------TT-KPKGKWYCPK 259 (259)
Q Consensus 210 ~~~~~~~C-~C~~~~~g~mi~C----d~~~c---~~~wfH~~Cv~~------~~-~~~~~w~C~~ 259 (259)
|+.....| .|++-..+..+.| .+..| ... |=..|+-. .+ .....|.||.
T Consensus 3 d~~~g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~-fC~~CL~~ryge~~~ev~~~~~W~CP~ 66 (105)
T PF10497_consen 3 DSVNGKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGK-FCGGCLRNRYGENVEEVLEDPNWKCPK 66 (105)
T ss_pred cCCCCCCchhhcCCCCCCceEcCCCCCCCCCccCcce-ehHhHHHHHHhhhHHHHhcCCceECCC
Confidence 44556788 9988777776677 33334 433 44566431 11 1246799994
No 119
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=35.40 E-value=5.7e+02 Score=27.17 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=22.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy7929 73 KTKEYGDDKVQLAIQTYEMVDKYIR-KLDTDLARFEQEIQE 112 (259)
Q Consensus 73 ~~~~l~dEKv~LA~~a~dlVd~hir-rLD~dl~~~e~el~~ 112 (259)
...+...||-.++-+-...+.+-+. .|.+++..++.++.+
T Consensus 675 ~~~e~~~Ee~r~~le~~~~~t~El~~~L~ae~~~~~kei~d 715 (984)
T COG4717 675 VAAELQKEEARLALEGNIERTKELNDELRAELELHRKEILD 715 (984)
T ss_pred HHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777774444444444444 666777666666554
No 120
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=35.02 E-value=1.9e+02 Score=22.04 Aligned_cols=46 Identities=17% Similarity=0.421 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 67 IQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQE 112 (259)
Q Consensus 67 I~~~~~~~~~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el~~ 112 (259)
+...+.++.+.-++|+.......+-+++.+..+...+..+...+..
T Consensus 81 ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 81 VEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888899999999999999999999999999888876653
No 121
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=34.83 E-value=2.4e+02 Score=22.70 Aligned_cols=44 Identities=16% Similarity=0.321 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 66 EIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEI 110 (259)
Q Consensus 66 ~I~~~~~~~~~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el 110 (259)
.+...+..+....++.-... +..+.+.++|..|+.+|...+..+
T Consensus 53 ~~~~~l~~~k~~lee~~~~~-~~~E~l~rriq~LEeele~ae~~L 96 (143)
T PF12718_consen 53 KLEEQLKEAKEKLEESEKRK-SNAEQLNRRIQLLEEELEEAEKKL 96 (143)
T ss_pred HHHHHHHHHHHHHHhHHHHH-HhHHHHHhhHHHHHHHHHHHHHHH
Confidence 34444444444444443332 122245555555555554444443
No 122
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=34.64 E-value=4.3e+02 Score=26.30 Aligned_cols=96 Identities=14% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHhhcccHHHHHhHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH-
Q psy7929 6 LEQYLDSLDSLPIELQRNFTLMRELD-------------------SRAQDVMKTIDRVAEDYLDNMKHYSKDKKKETLA- 65 (259)
Q Consensus 6 Ledfld~ie~LP~El~r~l~~irelD-------------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~- 65 (259)
++.+-+.++.+-.||..+|..|-..+ +++-++.+++-.++++.+++...++.+..+++.+
T Consensus 368 i~~~e~~vd~~~~~Ik~YL~~ls~~~Lse~es~r~~~iid~a~~lE~IgDiie~l~~~~~kk~~~~~~fse~~~~el~~l 447 (533)
T COG1283 368 IRKLEDAVDRLYEEIKLYLARLSKEGLSEEESRRWAEIIDAAINLEHIGDIIERLLELADKKIANGRAFSEDGLEELDAL 447 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q ss_pred --------------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 66 --------------EIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDT 101 (259)
Q Consensus 66 --------------~I~~~~~~~~~l~dEKv~LA~~a~dlVd~hirrLD~ 101 (259)
-...+.+.+.++-++|.++=..=.+.-..|++||..
T Consensus 448 ~~~~~~n~~~a~~~l~~~D~~~ar~lv~~k~~~r~~e~~~~k~H~~Rl~~ 497 (533)
T COG1283 448 FALTLENLRLAISVLVTGDLELARRLVERKKRVRRLERRSSKRHLDRLRD 497 (533)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 123
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=34.36 E-value=2e+02 Score=21.56 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 79 DDKVQLAIQTYEMVDKYIRKLDTDLAR 105 (259)
Q Consensus 79 dEKv~LA~~a~dlVd~hirrLD~dl~~ 105 (259)
++.|.--.++...+|.++++|+..++.
T Consensus 72 e~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 72 EEQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445666666777777777777776653
No 124
>PRK10807 paraquat-inducible protein B; Provisional
Probab=34.30 E-value=4.8e+02 Score=25.96 Aligned_cols=13 Identities=38% Similarity=0.659 Sum_probs=10.9
Q ss_pred hHHHHHHHhhccc
Q psy7929 5 YLEQYLDSLDSLP 17 (259)
Q Consensus 5 yLedfld~ie~LP 17 (259)
-+.+.++.++.||
T Consensus 421 ~~~~il~kin~lp 433 (547)
T PRK10807 421 KLMEALDKINNLP 433 (547)
T ss_pred HHHHHHHHHhcCC
Confidence 5678888899999
No 125
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=33.95 E-value=1.8e+02 Score=24.44 Aligned_cols=32 Identities=28% Similarity=0.440 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 79 DDKVQLAIQTYEMVDKYIRKLDTDLARFEQEI 110 (259)
Q Consensus 79 dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el 110 (259)
|+--.+-..+..+.++++.++|.-++.-|.++
T Consensus 147 D~~k~~~~~iqkltd~~i~~id~~~~~Kekei 178 (179)
T cd00520 147 DEVKKAEEDLQKLTDEYIKKIDELLKSKEKEL 178 (179)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334456677777888888888777766654
No 126
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=33.92 E-value=4.7e+02 Score=26.94 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 88 TYEMVDKYIRKLDTDLARFEQEIQEK 113 (259)
Q Consensus 88 a~dlVd~hirrLD~dl~~~e~el~~~ 113 (259)
.-|..-.+.+.||.++.++..|+...
T Consensus 539 ~~e~~r~r~~~lE~E~~~lr~elk~k 564 (697)
T PF09726_consen 539 CAESCRQRRRQLESELKKLRRELKQK 564 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678889999999988887664
No 127
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=33.56 E-value=23 Score=25.00 Aligned_cols=30 Identities=37% Similarity=0.907 Sum_probs=12.0
Q ss_pred cc-eeCCCC--CC--CceeecCCCCCCcceeeccCc
Q psy7929 216 YC-VCQQVS--YG--EMIGCDNPDCPIEWFHFACVS 246 (259)
Q Consensus 216 ~C-~C~~~~--~g--~mi~Cd~~~c~~~wfH~~Cv~ 246 (259)
.| +|.... .+ .-+.|+|+.|... ||..|+-
T Consensus 4 ~C~IC~~~~~~~~~~p~~~C~n~~C~~~-fH~~CL~ 38 (70)
T PF11793_consen 4 ECGICYSYRLDDGEIPDVVCPNPSCGKK-FHLLCLS 38 (70)
T ss_dssp S-SSS--SS-TT-----B--S-TT-----B-SGGGH
T ss_pred CCCcCCcEecCCCCcCceEcCCcccCCH-HHHHHHH
Confidence 45 776543 23 3588998889866 9999986
No 128
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=33.52 E-value=2.2e+02 Score=27.52 Aligned_cols=95 Identities=14% Similarity=0.228 Sum_probs=43.6
Q ss_pred HHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhH--HHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy7929 9 YLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKDK--KKETLAEIQKYFDKTKEYGDDKVQLAI 86 (259)
Q Consensus 9 fld~ie~LP~El~r~l~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~I~~~~~~~~~l~dEKv~LA~ 86 (259)
|-+.+++=|..|...|.- |.....+...+...+..|+...+-+.... -...+.+|.+.+.....--+.+-+-=.
T Consensus 362 l~~al~~np~~V~~lF~~----~~~~~G~~~~l~~~l~~~~~~~G~l~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~rl~ 437 (462)
T PRK08032 362 LTKALKEDPAGVKALFVG----DGKKTGITTQIATNLKSWLSTTGIIKTATDGVNKTLKKLTKQYNAVSDSIDATIARYK 437 (462)
T ss_pred HHHHHHHCHHHHHHHhCC----CCCCCcHHHHHHHHHHHHHcCCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566667777766631 11112344455555555555444332111 112334444444444433344333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy7929 87 QTYEMVDKYIRKLDTDLARFE 107 (259)
Q Consensus 87 ~a~dlVd~hirrLD~dl~~~e 107 (259)
.=|-.++.-|.+|.+....|.
T Consensus 438 ~qF~ame~~~s~mns~~s~L~ 458 (462)
T PRK08032 438 AQFTQLDKLMTSLNSTSSYLT 458 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555656555544443
No 129
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=33.51 E-value=22 Score=22.24 Aligned_cols=32 Identities=31% Similarity=0.846 Sum_probs=22.9
Q ss_pred CCccc-eeCCCCCC--CceeecCCCCCCcceeeccCcC
Q psy7929 213 EPTYC-VCQQVSYG--EMIGCDNPDCPIEWFHFACVSL 247 (259)
Q Consensus 213 ~~~~C-~C~~~~~g--~mi~Cd~~~c~~~wfH~~Cv~~ 247 (259)
.+.+| +|+..-.+ ..+.|.. |.+. .|..|+..
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~C~~--C~~~-~H~~C~~~ 44 (49)
T smart00109 10 KPTKCCVCRKSIWGSFQGLRCSW--CKVK-CHKKCAEK 44 (49)
T ss_pred CCCCccccccccCcCCCCcCCCC--CCch-HHHHHHhh
Confidence 36688 99887654 4677887 5555 79999763
No 130
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=33.45 E-value=42 Score=19.46 Aligned_cols=27 Identities=30% Similarity=0.872 Sum_probs=19.8
Q ss_pred cc-eeCCCCCCC-ceeecCCCCCCcceeeccC
Q psy7929 216 YC-VCQQVSYGE-MIGCDNPDCPIEWFHFACV 245 (259)
Q Consensus 216 ~C-~C~~~~~g~-mi~Cd~~~c~~~wfH~~Cv 245 (259)
.| +|++...|. +--|+- |.+. +|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~--c~f~-lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSE--CCFT-LHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCEeEEeCC--CCCe-EcCccC
Confidence 36 888888888 888865 4455 788885
No 131
>PRK05658 RNA polymerase sigma factor RpoD; Validated
Probab=33.10 E-value=3.4e+02 Score=27.34 Aligned_cols=27 Identities=11% Similarity=0.262 Sum_probs=16.5
Q ss_pred hcccHHHHHhHHHHHHHHHHHHHHHHH
Q psy7929 14 DSLPIELQRNFTLMRELDSRAQDVMKT 40 (259)
Q Consensus 14 e~LP~El~r~l~~irelD~~~~~~~~~ 40 (259)
..+|..+...|..|+++-.++.....+
T Consensus 214 ~~~~~~v~~~~~~i~~~~~~~~~~~~k 240 (619)
T PRK05658 214 SELPEKVLEKFKALAKQYKKLRKAQEK 240 (619)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666777777777665555544443
No 132
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=33.07 E-value=25 Score=23.09 Aligned_cols=27 Identities=26% Similarity=0.811 Sum_probs=12.5
Q ss_pred ceeecCCCCCCcceeeccCcCCc----CCCcccccC
Q psy7929 227 MIGCDNPDCPIEWFHFACVSLTT----KPKGKWYCP 258 (259)
Q Consensus 227 mi~Cd~~~c~~~wfH~~Cv~~~~----~~~~~w~C~ 258 (259)
-|+||.|. -|=... .++.. .|. .|||.
T Consensus 3 WVQCd~C~---KWR~lp-~~~~~~~~~~~d-~W~C~ 33 (50)
T PF07496_consen 3 WVQCDSCL---KWRRLP-EEVDPIREELPD-PWYCS 33 (50)
T ss_dssp EEE-TTT-----EEEE--CCHHCTSCCSST-T--GG
T ss_pred EEECCCCC---ceeeCC-hhhCcccccCCC-eEEcC
Confidence 58999865 786665 33322 233 89994
No 133
>PF12889 DUF3829: Protein of unknown function (DUF3829); InterPro: IPR024291 This is a small family of proteins from several bacterial species, whose function is not known. It may, however, be related to the GvpL_GvpF family of proteins (PF06386 from PFAM).; PDB: 3RH3_B 3IEE_A.
Probab=32.04 E-value=1.8e+02 Score=25.36 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=14.1
Q ss_pred HHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHH
Q psy7929 83 QLAIQTYEMV---D---KYIRKLDTDLARFEQEIQE 112 (259)
Q Consensus 83 ~LA~~a~dlV---d---~hirrLD~dl~~~e~el~~ 112 (259)
..|.++.++| + -.+..++..+..|+..+..
T Consensus 168 ~~a~~i~~~l~~~~~~~~d~~~~~~~l~~~~~~~~~ 203 (276)
T PF12889_consen 168 IDAEQIIDELQSDDNQKFDMAALDAALAELEKLLKD 203 (276)
T ss_dssp HHHHHHHHHHT-TTS--HHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHH
Confidence 4455555555 1 3344444446666555443
No 134
>KOG1493|consensus
Probab=31.82 E-value=15 Score=26.75 Aligned_cols=31 Identities=35% Similarity=0.972 Sum_probs=21.9
Q ss_pred cc-eeCCCCCCCceeec--CCCCCCcc------eeeccCc
Q psy7929 216 YC-VCQQVSYGEMIGCD--NPDCPIEW------FHFACVS 246 (259)
Q Consensus 216 ~C-~C~~~~~g~mi~Cd--~~~c~~~w------fH~~Cv~ 246 (259)
.| +|+.+-.|--..|. +.+||.-| ||..|+-
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~ 61 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCIL 61 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHH
Confidence 67 99998777544454 33588766 8888875
No 135
>PF04961 FTCD_C: Formiminotransferase-cyclodeaminase; InterPro: IPR007044 Enzymes containing the cyclodeaminase domain function in channeling one-carbon units to the folate pool. In most cases, this domain catalyses the cyclisation of formimidoyltetrahydrofolate to methenyltetrahydrofolate as shown in reaction (1). In the methylotrophic bacterium Methylobacterium extorquens, however, it catalyses the interconversion of formyltetrahydrofolate and methylenetetrahydrofolate [],as shown in reaction (2) (1) 5-formimidoyltetrahydrofolate = 5,10-methenyltetrahydrofolate + NH(3) (2) 10- formyltetrahydrofolate = 5,10-methenyltetrahydrofolate + H(2)O In prokaryotes, this domain mostly occurs on its own, while in eukaryotes it is fused to a glutamate formiminotransferase domain (which catalyses the previous step in the pathway) to form the bifunctional enzyme formiminotransferase-cyclodeaminase []. The eukaryotic enzyme is a circular tetramer of homodimers [], while the prokaryotic enzyme is a dimer [, ]. The crystal structure of the cyclodeaminase enzyme (Q9X1P6 from SWISSPROT) from Thermaotogoa maritima has been studied []. It is a homodimer, where each monomer is composed of six alpha helices arranged in an up and down helical bundle, forming a novel fold. The location of the active site is not known, but sequence alignments revealed two clusters of conserved residues located in a deep pocket within the dimmer interface. This pocket was large enough to accommodate the reaction product and it was postulated that this is the active site.; GO: 0003824 catalytic activity, 0044237 cellular metabolic process; PDB: 2PFD_C 1O5H_B.
Probab=31.62 E-value=3.1e+02 Score=23.00 Aligned_cols=75 Identities=16% Similarity=0.194 Sum_probs=39.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy7929 18 IELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMK--HYSKDKKKETLAEIQKYFDKTKEYGDDKVQLAIQTYEMV 92 (259)
Q Consensus 18 ~El~r~l~~irelD~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~I~~~~~~~~~l~dEKv~LA~~a~dlV 92 (259)
.+++..+..+.++-.++..+.++=......|++..+ .-+++++...-..|++.+..+...-=+=..++..+++++
T Consensus 52 ~~~~~~~~~~~~~~~~ll~l~d~D~~af~~~~~a~klPk~T~eek~~R~~~i~~al~~A~~vPl~~a~~~~~~l~~~ 128 (184)
T PF04961_consen 52 EELKEIIEKLEELREELLDLADEDAEAFNAVMAAYKLPKETDEEKAARSEAIQEALKEAAEVPLEIARLCLELLELA 128 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCTS---SGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555554444444444444444445555332 345566666677788888887765544444444444333
No 136
>PF07319 DnaI_N: Primosomal protein DnaI N-terminus; InterPro: IPR009928 This entry represents the N terminus (approximately 120 residues) of bacterial primosomal DnaI proteins, although one family member appears to be of viral origin. DnaI is one of the components of the Bacillus subtilis replication restart primosome, and is required for the DnaB75-dependent loading of the DnaC helicase [].; PDB: 2K7R_A.
Probab=30.81 E-value=1.8e+02 Score=21.59 Aligned_cols=31 Identities=13% Similarity=0.420 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHhc-CCCChh
Q psy7929 28 RELDSRAQDVMKTI--DRVAEDYLDNM-KHYSKD 58 (259)
Q Consensus 28 relD~~~~~~~~~i--~~~~~~~~~~~-~~~~~~ 58 (259)
+.+..+++++++++ +..++.|+..+ ..++.+
T Consensus 15 ~~~~~~~~~l~~~vl~dp~V~~Fl~~h~~eLt~~ 48 (94)
T PF07319_consen 15 RNFEERYEQLKQEVLSDPEVQAFLQEHQPELTQE 48 (94)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHSTTT--HH
T ss_pred ccHHHHHHHHHHHHHcCHHHHHHHHHhHHhcCHH
Confidence 56677888888887 77899999987 556544
No 137
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=30.60 E-value=4.4e+02 Score=24.35 Aligned_cols=38 Identities=16% Similarity=0.273 Sum_probs=24.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 72 DKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQE 109 (259)
Q Consensus 72 ~~~~~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~e 109 (259)
.....|..|||.|=+++-.==+--+++|...+.+++.+
T Consensus 156 ~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~e 193 (310)
T PF09755_consen 156 EELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAE 193 (310)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44558899999998877554444555555555555544
No 138
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=29.61 E-value=41 Score=26.18 Aligned_cols=28 Identities=7% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy7929 28 RELDSRAQDVMKTIDRVAEDYLDNMKHY 55 (259)
Q Consensus 28 relD~~~~~~~~~i~~~~~~~~~~~~~~ 55 (259)
+.||.-+..-..+++...+.|...+..+
T Consensus 18 k~Leeiin~W~~eLe~q~k~F~~qA~~V 45 (116)
T PF05064_consen 18 KTLEEIINKWNKELEEQEKEFNEQATQV 45 (116)
T ss_dssp ----------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666777777777655543
No 139
>PRK10132 hypothetical protein; Provisional
Probab=29.28 E-value=2.7e+02 Score=21.49 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHhcCCCChhHHHHHHHHHHHHHHHHH
Q psy7929 30 LDSRAQDVMKTIDRV---AEDYLDNMKHYSKDKKKETLAEIQKYFDKTK 75 (259)
Q Consensus 30 lD~~~~~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~ 75 (259)
+|.+...++.+|... +++.++..+..+.++-..+..++...+..+.
T Consensus 10 ~~~q~e~L~~Dl~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar 58 (108)
T PRK10132 10 VDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETR 58 (108)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 444444444444333 2233443333333322333344555444444
No 140
>PRK14011 prefoldin subunit alpha; Provisional
Probab=29.18 E-value=1.7e+02 Score=23.76 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 67 IQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQEKA 114 (259)
Q Consensus 67 I~~~~~~~~~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el~~~~ 114 (259)
+.....+|.+.-+.|+.......+.+...|.++...+..+..++...+
T Consensus 82 VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~ 129 (144)
T PRK14011 82 LEKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRA 129 (144)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888888888888889999999999988888887777653
No 141
>PLN02678 seryl-tRNA synthetase
Probab=28.86 E-value=5.5e+02 Score=24.93 Aligned_cols=22 Identities=14% Similarity=0.294 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy7929 92 VDKYIRKLDTDLARFEQEIQEK 113 (259)
Q Consensus 92 Vd~hirrLD~dl~~~e~el~~~ 113 (259)
|...|..|+.++..++.++...
T Consensus 83 Lk~ei~~le~~~~~~~~~l~~~ 104 (448)
T PLN02678 83 LKKEITEKEAEVQEAKAALDAK 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888888777777654
No 142
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=28.79 E-value=4.8e+02 Score=24.29 Aligned_cols=44 Identities=18% Similarity=0.284 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 63 TLAEIQKYFDKTKEY-GDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEI 110 (259)
Q Consensus 63 ~~~~I~~~~~~~~~l-~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el 110 (259)
.+..+...++++..- ..|. ....+-++..|++...-+...|+.+
T Consensus 47 rLk~L~~sLk~~~~~~~~e~----~~~i~~L~~~Ik~r~~~l~DmEa~L 91 (330)
T PF07851_consen 47 RLKELKKSLKRCKKSLSAEE----RELIEKLEEDIKERRCQLFDMEAFL 91 (330)
T ss_pred HHHHHHHHHHHhccCCChhH----HHHHHHHHHHHHHHHhhHHHHHhhC
Confidence 345555555555432 2222 2333334444444444444444333
No 143
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=28.35 E-value=3.2e+02 Score=24.40 Aligned_cols=78 Identities=19% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy7929 6 LEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGDDKVQL 84 (259)
Q Consensus 6 Ledfld~ie~LP~El~r~l~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~dEKv~L 84 (259)
+..+--.|..|..+|...-.....|..++.++..........|-.....+.. +...+...|...+.+...|.+-|+.|
T Consensus 218 ~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~-el~~l~~~~~~~~~ey~~Ll~~K~~L 295 (312)
T PF00038_consen 218 LKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEE-ELAELREEMARQLREYQELLDVKLAL 295 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccch-hHHHHHHHHHHHHHHHHHHHHHHHhH
No 144
>KOG0982|consensus
Probab=28.23 E-value=5.1e+02 Score=25.16 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhhHHHHHHHH
Q psy7929 67 IQKYFDKTKEYGDDKVQLAI 86 (259)
Q Consensus 67 I~~~~~~~~~l~dEKv~LA~ 86 (259)
|.+.......++..|..+|+
T Consensus 376 ieelrkelehlr~~kl~~a~ 395 (502)
T KOG0982|consen 376 IEELRKELEHLRRRKLVLAN 395 (502)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 34444444555555555553
No 145
>PF08822 DUF1804: Protein of unknown function (DUF1804); InterPro: IPR014926 This entry is represented by Bacteriophage D3112, Orf24. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=28.20 E-value=3.6e+02 Score=22.56 Aligned_cols=60 Identities=18% Similarity=0.324 Sum_probs=44.9
Q ss_pred hcCCCChhHHHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy7929 51 NMKHYSKDKKKETLAEIQKYFDKTKEYGD------DKVQLAIQTYEMVDKYIRKLD-TDLARFEQEI 110 (259)
Q Consensus 51 ~~~~~~~~~~~~~~~~I~~~~~~~~~l~d------EKv~LA~~a~dlVd~hirrLD-~dl~~~e~el 110 (259)
....+++.+|.+++..+.+.|.++...+. .++.+|..+.+++-.+++.-- +.+..|-+-+
T Consensus 88 ~~~~~~~~~k~~~LasLaDsf~K~vaaskr~lPets~LavA~~vl~~l~~fv~e~~P~h~~af~eiL 154 (165)
T PF08822_consen 88 ENEDMPPQEKVELLASLADSFSKMVAASKRVLPETSELAVAMEVLELLAAFVQERYPQHLAAFLEIL 154 (165)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 44578899999999999999988886664 578888888888888777555 4444444333
No 146
>KOG3564|consensus
Probab=27.98 E-value=6e+02 Score=25.17 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 63 TLAEIQKYFDKTK---EYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQE 112 (259)
Q Consensus 63 ~~~~I~~~~~~~~---~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el~~ 112 (259)
-+.++++++.++. ..-|-|+.=|....++.-+.-|+++.|++++|..+..
T Consensus 50 e~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~ 102 (604)
T KOG3564|consen 50 ELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQL 102 (604)
T ss_pred HHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3455666666664 3457788889999999999999999999999987655
No 147
>PF12095 DUF3571: Protein of unknown function (DUF3571); InterPro: IPR021954 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 85 to 97 amino acids in length. ; PDB: 2KRX_A.
Probab=27.95 E-value=1.3e+02 Score=22.25 Aligned_cols=32 Identities=25% Similarity=0.493 Sum_probs=21.2
Q ss_pred hhHHHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHH
Q psy7929 4 SYLEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMK 39 (259)
Q Consensus 4 ~yLedfld~ie~LP~El~r~l~~irelD~~~~~~~~ 39 (259)
..|.+++...++||.+|++. .-+|.+++.+++
T Consensus 31 ~~Lk~~L~~~~~LP~dL~~~----~s~~~qa~~Lld 62 (83)
T PF12095_consen 31 EKLKEWLQNQDDLPPDLAKF----SSVEEQAQYLLD 62 (83)
T ss_dssp HHHHHHHHHTTTS-HHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHhC----CCHHHHHHHHHH
Confidence 47888999999999999854 345566655544
No 148
>KOG1512|consensus
Probab=27.43 E-value=18 Score=32.90 Aligned_cols=43 Identities=23% Similarity=0.361 Sum_probs=27.9
Q ss_pred CCccceeCCCCC-----CCceeecCCCCCCcceeeccCcCCcCCC-----cccccC
Q psy7929 213 EPTYCVCQQVSY-----GEMIGCDNPDCPIEWFHFACVSLTTKPK-----GKWYCP 258 (259)
Q Consensus 213 ~~~~C~C~~~~~-----g~mi~Cd~~~c~~~wfH~~Cv~~~~~~~-----~~w~C~ 258 (259)
+-..|+=.+.+. ..||+|.. |.+. +|..||.|+..-. -.|-|-
T Consensus 260 ~~~~~~~~~~~~~~~r~~S~I~C~~--C~~~-~HP~Ci~M~~elv~~~KTY~W~C~ 312 (381)
T KOG1512|consen 260 ERKHFWDIQTNIIQSRRNSWIVCKP--CATR-PHPYCVAMIPELVGQYKTYFWKCS 312 (381)
T ss_pred hhhhhhcchhhhhhhhhccceeecc--cccC-CCCcchhcCHHHHhHHhhcchhhc
Confidence 334555455443 34999998 5555 8999999876442 258773
No 149
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=27.32 E-value=6.3e+02 Score=25.11 Aligned_cols=9 Identities=33% Similarity=0.589 Sum_probs=4.0
Q ss_pred hHHHHHHHh
Q psy7929 5 YLEQYLDSL 13 (259)
Q Consensus 5 yLedfld~i 13 (259)
.|+++++.|
T Consensus 209 ~l~~~~~~i 217 (569)
T PRK04778 209 ALEQIMEEI 217 (569)
T ss_pred HHHHHHHHH
Confidence 344444444
No 150
>PF10732 DUF2524: Protein of unknown function (DUF2524); InterPro: IPR019668 This entry represents proteins with unknown function, and appear to be restricted to the Bacillaceae.
Probab=27.26 E-value=2.6e+02 Score=20.66 Aligned_cols=60 Identities=7% Similarity=0.114 Sum_probs=42.0
Q ss_pred hhHHHHHHHhhcccHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q psy7929 4 SYLEQYLDSLDSLPIELQRNFTLMREL----DSRAQDVMKTIDRVAEDYLDNMKHYSKDKKKET 63 (259)
Q Consensus 4 ~yLedfld~ie~LP~El~r~l~~irel----D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 63 (259)
-++++|++-.+..=...+..|.+=... |..+.+.+..++....++-+-..+..+++|+.+
T Consensus 5 qs~~~~lq~~e~~i~~a~eQ~~~~~rqehynd~eYt~Aq~~LE~a~neL~~l~~sAN~qQREqL 68 (84)
T PF10732_consen 5 QSVDEFLQQCEQAIRFAQEQFEEGSRQEHYNDEEYTEAQQMLEEAYNELEKLAHSANPQQREQL 68 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 367888887776555555555544333 778888888888888887777777778777743
No 151
>PF11985 DUF3486: Protein of unknown function (DUF3486); InterPro: IPR021874 This entry is represented by Bacteriophage Mu, Gp27. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=26.99 E-value=3.6e+02 Score=22.29 Aligned_cols=18 Identities=28% Similarity=0.553 Sum_probs=13.2
Q ss_pred HhhcccHHHHHhHHH-HHH
Q psy7929 12 SLDSLPIELQRNFTL-MRE 29 (259)
Q Consensus 12 ~ie~LP~El~r~l~~-ire 29 (259)
.|+-||.||+.-|.. |++
T Consensus 6 kId~LP~eir~~l~~~L~~ 24 (180)
T PF11985_consen 6 KIDLLPPEIREWLDQMLRD 24 (180)
T ss_pred hHhhCCHHHHHHHHHHHHh
Confidence 688999999875555 444
No 152
>KOG1655|consensus
Probab=26.71 E-value=1.3e+02 Score=25.98 Aligned_cols=30 Identities=27% Similarity=0.510 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 83 QLAIQTYEMVDKYIRKLDTDLARFEQEIQE 112 (259)
Q Consensus 83 ~LA~~a~dlVd~hirrLD~dl~~~e~el~~ 112 (259)
.=.+...+.|++.|.+||++|.+|...+..
T Consensus 22 ~~v~~r~dSve~KIskLDaeL~k~~~Qi~k 51 (218)
T KOG1655|consen 22 DSVNKRSDSVEKKISKLDAELCKYKDQIKK 51 (218)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 344666788999999999999999876654
No 153
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=26.23 E-value=2.4e+02 Score=19.97 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=24.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy7929 54 HYSKDKKKETLAEIQKYFDKTKEYGDDKVQLAIQ 87 (259)
Q Consensus 54 ~~~~~~~~~~~~~I~~~~~~~~~l~dEKv~LA~~ 87 (259)
.++...+.+.+..+.+.=.+...-++|+++|..=
T Consensus 52 ~~~~~~k~~i~~~la~~e~rl~~G~~e~lQl~al 85 (89)
T PF08542_consen 52 DIPDSQKAEILKILAEIEYRLSDGASEILQLEAL 85 (89)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhHHHHCCCCHHHHHHHH
Confidence 5566667777777777777888888999888653
No 154
>TIGR01013 2a58 Phosphate:Na+ Symporter (PNaS) Family.
Probab=26.23 E-value=5.9e+02 Score=24.40 Aligned_cols=13 Identities=8% Similarity=-0.251 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q psy7929 87 QTYEMVDKYIRKL 99 (259)
Q Consensus 87 ~a~dlVd~hirrL 99 (259)
...++-++|++||
T Consensus 419 l~~~~~~~h~~rl 431 (456)
T TIGR01013 419 LELFSSLLHVLQL 431 (456)
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444444
No 155
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]
Probab=26.18 E-value=33 Score=28.51 Aligned_cols=18 Identities=28% Similarity=0.877 Sum_probs=11.2
Q ss_pred eeccCcCCc--CCCcccccC
Q psy7929 241 HFACVSLTT--KPKGKWYCP 258 (259)
Q Consensus 241 H~~Cv~~~~--~~~~~w~C~ 258 (259)
|+.|+..-. ...+.|+||
T Consensus 110 HlGC~~~~~~~~~~~~~~CP 129 (177)
T COG0723 110 HLGCTVPWNNAGAEGGFFCP 129 (177)
T ss_pred CCCCccCcccCCCCCeEEcc
Confidence 666655442 445789997
No 156
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=25.98 E-value=3e+02 Score=20.99 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHhcCCCChhHHH
Q psy7929 27 MRELDSRAQDVMKTID--RVAEDYLDNMKHYSKDKKK 61 (259)
Q Consensus 27 irelD~~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~ 61 (259)
|-++|.+.+++.+.+. .++.+++-+.++-+++.|.
T Consensus 1 iA~~di~l~~~~EkiatLNKmAEvLinlks~~~esrk 37 (99)
T PF11083_consen 1 IAELDIKLTQTQEKIATLNKMAEVLINLKSDDPESRK 37 (99)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 3578888888887765 3456677777777766554
No 157
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=25.80 E-value=6.3e+02 Score=25.27 Aligned_cols=42 Identities=26% Similarity=0.345 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 67 IQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQ 108 (259)
Q Consensus 67 I~~~~~~~~~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~ 108 (259)
+.+.+++++.-.....+.+..+..-|..-..+|.++++.++.
T Consensus 217 ~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ 258 (555)
T TIGR03545 217 IKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKK 258 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 333444444444444445555555555555555555555544
No 158
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=25.75 E-value=1.9e+02 Score=20.61 Aligned_cols=31 Identities=13% Similarity=0.226 Sum_probs=22.8
Q ss_pred cHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 17 PIELQRNFTLMRELDSRAQDVMKTIDRVAED 47 (259)
Q Consensus 17 P~El~r~l~~irelD~~~~~~~~~i~~~~~~ 47 (259)
|.|+...+..+-++|+++.-...++-+.+-+
T Consensus 11 ~~d~~~i~~rLd~iEeKVEf~~~E~~Qr~Gk 41 (70)
T TIGR01149 11 PDEFNEVMKRLDEIEEKVEFVNGEVAQRIGK 41 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 5788888888888888887777776655443
No 159
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=25.64 E-value=4.1e+02 Score=22.43 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 83 QLAIQTYEMVDKYIRKLDTDLARFE 107 (259)
Q Consensus 83 ~LA~~a~dlVd~hirrLD~dl~~~e 107 (259)
.-|....+-+.+.+..|+.+|...+
T Consensus 149 ~~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 149 EEAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444445555555544443
No 160
>PF14075 UBN_AB: Ubinuclein conserved middle domain
Probab=25.45 E-value=4.5e+02 Score=22.80 Aligned_cols=18 Identities=22% Similarity=0.521 Sum_probs=14.4
Q ss_pred hcccHHHHHhHHHHHHHH
Q psy7929 14 DSLPIELQRNFTLMRELD 31 (259)
Q Consensus 14 e~LP~El~r~l~~irelD 31 (259)
++||.+|...+..|+++=
T Consensus 3 ~~Lp~~l~~~I~~l~~~a 20 (214)
T PF14075_consen 3 EGLPADLEERINDLKEAA 20 (214)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 578999988888888763
No 161
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=25.29 E-value=5.4e+02 Score=23.71 Aligned_cols=46 Identities=13% Similarity=0.232 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 62 ETLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQ 108 (259)
Q Consensus 62 ~~~~~I~~~~~~~~~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~ 108 (259)
.++.+|-+.-.+++.++-|+-.|.+++...-+.|- +|-.++..|..
T Consensus 238 ~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~-~L~aEL~elqd 283 (306)
T PF04849_consen 238 SLLSQIVDLQQRCKQLAAENEELQQHLQASKESQR-QLQAELQELQD 283 (306)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 56678888888999999999999999988888865 47777766653
No 162
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=25.15 E-value=4.7e+02 Score=27.24 Aligned_cols=10 Identities=30% Similarity=0.647 Sum_probs=4.8
Q ss_pred HHHHHHHHHH
Q psy7929 98 KLDTDLARFE 107 (259)
Q Consensus 98 rLD~dl~~~e 107 (259)
+.+.+|.+|+
T Consensus 271 k~~~El~kL~ 280 (782)
T COG0466 271 KAEKELKKLE 280 (782)
T ss_pred HHHHHHHHHh
Confidence 4444455554
No 163
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=25.02 E-value=2.6e+02 Score=19.84 Aligned_cols=26 Identities=8% Similarity=0.112 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCChh
Q psy7929 33 RAQDVMKTIDRVAEDYLDNMKHYSKD 58 (259)
Q Consensus 33 ~~~~~~~~i~~~~~~~~~~~~~~~~~ 58 (259)
.+..+.+.|++.+..+-...+.+++.
T Consensus 22 ~l~~~a~~i~~~i~~~~~~~~~~~~~ 47 (89)
T PF05164_consen 22 YLRKAAELINEKINEIKKKYPKLSPE 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCTSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 45566666777777776666655543
No 164
>cd04772 HTH_TioE_rpt1 First Helix-Turn-Helix DNA binding domain of the regulatory protein TioE. Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD contains the N-terminal or first repeat (rpt1) of these tandem MerR-like domain proteins.
Probab=24.97 E-value=96 Score=23.18 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 87 QTYEMVDKYIRKLDTDLARFEQE 109 (259)
Q Consensus 87 ~a~dlVd~hirrLD~dl~~~e~e 109 (259)
.+.++++.|+..|+..++.++.+
T Consensus 76 ~~~~ll~~~~~~l~~~i~~L~~~ 98 (99)
T cd04772 76 SALALVDAAHALLQRYRQQLDQE 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 67899999999999999888765
No 165
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=24.76 E-value=47 Score=20.86 Aligned_cols=32 Identities=31% Similarity=0.924 Sum_probs=22.8
Q ss_pred CCccc-eeCCCCCC---CceeecCCCCCCcceeeccCcC
Q psy7929 213 EPTYC-VCQQVSYG---EMIGCDNPDCPIEWFHFACVSL 247 (259)
Q Consensus 213 ~~~~C-~C~~~~~g---~mi~Cd~~~c~~~wfH~~Cv~~ 247 (259)
.+.+| +|+..-.| .-+.|.. |.+. .|..|...
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~~C~~--C~~~-~H~~C~~~ 45 (50)
T cd00029 10 KPTFCDVCRKSIWGLFKQGLRCSW--CKVK-CHKKCADK 45 (50)
T ss_pred CCCChhhcchhhhccccceeEcCC--CCCc-hhhhhhcc
Confidence 35688 99887664 5667887 4455 89999763
No 166
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=24.62 E-value=2.9e+02 Score=20.39 Aligned_cols=18 Identities=11% Similarity=0.315 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHhhHHHHH
Q psy7929 66 EIQKYFDKTKEYGDDKVQ 83 (259)
Q Consensus 66 ~I~~~~~~~~~l~dEKv~ 83 (259)
+|...+......-+.|+.
T Consensus 12 rL~~aid~LE~~v~~r~~ 29 (89)
T PF13747_consen 12 RLEAAIDRLEKAVDRRLE 29 (89)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 167
>cd04777 HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 1), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=24.43 E-value=2.1e+02 Score=21.43 Aligned_cols=24 Identities=8% Similarity=0.232 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 87 QTYEMVDKYIRKLDTDLARFEQEI 110 (259)
Q Consensus 87 ~a~dlVd~hirrLD~dl~~~e~el 110 (259)
.+..++.+|+..|++.++.+...+
T Consensus 81 ~~~~~l~~~~~~l~~~i~~l~~~~ 104 (107)
T cd04777 81 YYKSFLKNKKDELEKEIEDLKKAI 104 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888999999999888887544
No 168
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=24.32 E-value=6.3e+02 Score=24.10 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy7929 92 VDKYIRKLDTDLARFEQEIQEK 113 (259)
Q Consensus 92 Vd~hirrLD~dl~~~e~el~~~ 113 (259)
|...|+.|+..+..++.++...
T Consensus 81 l~~~~~~~~~~~~~~~~~~~~~ 102 (418)
T TIGR00414 81 LKEELTELSAALKALEAELQDK 102 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445777888777777776654
No 169
>PHA03386 P10 fibrous body protein; Provisional
Probab=24.30 E-value=3.2e+02 Score=20.65 Aligned_cols=31 Identities=19% Similarity=0.437 Sum_probs=25.2
Q ss_pred cHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 17 PIELQRNFTLMRELDSRAQDVMKTIDRVAED 47 (259)
Q Consensus 17 P~El~r~l~~irelD~~~~~~~~~i~~~~~~ 47 (259)
|+-|.-++.-|+++|.++..+..+++.....
T Consensus 4 pnILl~Ir~dIkavd~KVdaLQ~qV~dv~~n 34 (94)
T PHA03386 4 PSVLTQILDAVQEVDTKVDALQTQLNGLEED 34 (94)
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 7778888999999999999988887755443
No 170
>KOG0612|consensus
Probab=24.25 E-value=9.8e+02 Score=26.50 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=19.3
Q ss_pred hhcccHHHHHhHHHHHHHHHHHHHHH
Q psy7929 13 LDSLPIELQRNFTLMRELDSRAQDVM 38 (259)
Q Consensus 13 ie~LP~El~r~l~~irelD~~~~~~~ 38 (259)
+.-|+..+...+..++.+|.+++...
T Consensus 436 ~~~le~~l~~~~~~~~~~~~~~~~~~ 461 (1317)
T KOG0612|consen 436 LQILEQSLVNEMQEKEKLDEKCQAVA 461 (1317)
T ss_pred hhhcccchhhHHHHhhhHHHHHHHHh
Confidence 34566667778888888888888765
No 171
>COG5278 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=24.01 E-value=4.7e+02 Score=22.58 Aligned_cols=43 Identities=23% Similarity=0.412 Sum_probs=27.8
Q ss_pred hhHHHHHHHhhcccHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q psy7929 4 SYLEQYLDSLDSLPIELQRNFTLMREL---DSRAQDVMKTIDRVAEDYLD 50 (259)
Q Consensus 4 ~yLedfld~ie~LP~El~r~l~~irel---D~~~~~~~~~i~~~~~~~~~ 50 (259)
.||+.|-+.. .++.+.+.+++.| |....+..+.++..+..++.
T Consensus 77 ~yL~py~~a~----~~~~~~~~~l~~l~~d~p~~~~~l~~l~~~i~~~l~ 122 (207)
T COG5278 77 EYLEPYEEAT----EELDQKLEELRALTADDPELLESLDDLEPLIQWKLA 122 (207)
T ss_pred hhhhHHHHHH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3555555555 4566777777777 36677777777766666655
No 172
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=23.88 E-value=7.2e+02 Score=24.67 Aligned_cols=46 Identities=11% Similarity=0.221 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 63 TLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQ 108 (259)
Q Consensus 63 ~~~~I~~~~~~~~~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~ 108 (259)
.+..+...|..+.+--.++-.-=..+++.|+.++..|+.++..|+.
T Consensus 137 ~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~ 182 (560)
T PF06160_consen 137 EIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEE 182 (560)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444555555666666666666555554
No 173
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=23.86 E-value=33 Score=31.14 Aligned_cols=38 Identities=24% Similarity=0.704 Sum_probs=23.5
Q ss_pred CCCccc-eeCCCCCCC------------ceeecCCCCCCcceee--ccCcCCcCC
Q psy7929 212 NEPTYC-VCQQVSYGE------------MIGCDNPDCPIEWFHF--ACVSLTTKP 251 (259)
Q Consensus 212 ~~~~~C-~C~~~~~g~------------mi~Cd~~~c~~~wfH~--~Cv~~~~~~ 251 (259)
+...|| +|+..+-.- .+-|.. |..+|... .|++-....
T Consensus 183 e~~~~CPvCGS~PvaSmV~~g~~~~GlRYL~Csl--C~teW~~VR~KC~nC~~t~ 235 (308)
T COG3058 183 ESRQYCPVCGSMPVASMVQIGETEQGLRYLHCSL--CETEWHYVRVKCSNCEQSK 235 (308)
T ss_pred cccccCCCcCCCCcceeeeecCccccchhhhhhh--HHHHHHHHHHHhccccccC
Confidence 346799 998865433 334776 55689433 788765544
No 174
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=23.71 E-value=5.1e+02 Score=22.82 Aligned_cols=23 Identities=17% Similarity=0.442 Sum_probs=9.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Q psy7929 19 ELQRNFTLMRELDSRAQDVMKTI 41 (259)
Q Consensus 19 El~r~l~~irelD~~~~~~~~~i 41 (259)
.|...|..|.++-.++.+.+.++
T Consensus 26 ~l~~~l~~l~~~~~~~~~~L~e~ 48 (296)
T PF13949_consen 26 KLEESLQELPELSQEVRSILDEI 48 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 175
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=23.62 E-value=3.6e+02 Score=26.31 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=22.8
Q ss_pred hhcccHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy7929 13 LDSLPIELQRNFTLMRELDSRAQDVMKTID 42 (259)
Q Consensus 13 ie~LP~El~r~l~~irelD~~~~~~~~~i~ 42 (259)
|++||..-..-++++-+.|=+.++.+++.+
T Consensus 121 ~~~lpes~a~av~el~~y~w~s~~ar~k~e 150 (652)
T COG4867 121 LDALPESPAKAVQELAEYRWRSGQAREKYE 150 (652)
T ss_pred hccCCcchHHHHHHHHHhcchhhHHHHHHH
Confidence 678888888888888888877777666544
No 176
>PF14992 TMCO5: TMCO5 family
Probab=23.58 E-value=3.6e+02 Score=24.51 Aligned_cols=29 Identities=10% Similarity=0.264 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy7929 64 LAEIQKYFDKTKEYGDDKVQLAIQTYEMV 92 (259)
Q Consensus 64 ~~~I~~~~~~~~~l~dEKv~LA~~a~dlV 92 (259)
+.++.+.++....+..+-+.-+....+.+
T Consensus 132 i~kve~d~~~v~~l~eDq~~~i~klkE~L 160 (280)
T PF14992_consen 132 IAKVEDDYQQVHQLCEDQANEIKKLKEKL 160 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555544444444444433
No 177
>KOG2685|consensus
Probab=23.55 E-value=6.7e+02 Score=24.15 Aligned_cols=102 Identities=14% Similarity=0.209 Sum_probs=60.7
Q ss_pred HHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCCCChhH-------HHHHHHHHHHHHHHH
Q psy7929 8 QYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLD------NMKHYSKDK-------KKETLAEIQKYFDKT 74 (259)
Q Consensus 8 dfld~ie~LP~El~r~l~~irelD~~~~~~~~~i~~~~~~~~~------~~~~~~~~~-------~~~~~~~I~~~~~~~ 74 (259)
+.-+....|-..+...+.+|.+.+..+..+...|..... .++ ..++.-|+- .-.+..++. .+...
T Consensus 282 etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~-pLKVAqTRle~Rt~RPnvELCrD~AQ~~L~~EV~-~l~~t 359 (421)
T KOG2685|consen 282 ETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEG-PLKVAQTRLENRTYRPNVELCRDQAQYRLVDEVH-ELDDT 359 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccc-cHHHHHHHHHHcccCCchHHHHhHHHHHHHHHHH-HHHHH
Confidence 444555566677777777777777777666665543211 111 111222210 111222222 23444
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 75 KEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQ 111 (259)
Q Consensus 75 ~~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el~ 111 (259)
..-..+|+.-|++.+.++.+|-.+|+.||+.-...+-
T Consensus 360 ~~~L~~kL~eA~~~l~~L~~~~~rLe~di~~k~nsL~ 396 (421)
T KOG2685|consen 360 VAALKEKLDEAEDSLKLLVNHRARLERDIAIKANSLF 396 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 5556789999999999999999999999987766554
No 178
>PRK10869 recombination and repair protein; Provisional
Probab=23.54 E-value=7.3e+02 Score=24.61 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=9.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHH
Q psy7929 19 ELQRNFTLMRELDSRAQDVMK 39 (259)
Q Consensus 19 El~r~l~~irelD~~~~~~~~ 39 (259)
.+.+.|..+.++|..+.++..
T Consensus 248 ~~~~~l~~~~~~d~~~~~~~~ 268 (553)
T PRK10869 248 SAKQLLSELIGMDSKLSGVLD 268 (553)
T ss_pred HHHHHHHHHhhhCHhHHHHHH
Confidence 334455555555554444433
No 179
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=23.50 E-value=8.7e+02 Score=25.48 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 80 DKVQLAIQTYEMVDKYIRKLDTDLARFE 107 (259)
Q Consensus 80 EKv~LA~~a~dlVd~hirrLD~dl~~~e 107 (259)
-|+.-|..=...+.--+|+=|+++.+|.
T Consensus 515 ~kLe~sekEN~iL~itlrQrDaEi~RL~ 542 (861)
T PF15254_consen 515 FKLEASEKENQILGITLRQRDAEIERLR 542 (861)
T ss_pred hhHHHHHhhhhHhhhHHHHHHHHHHHHH
Confidence 3444444444455555566666665554
No 180
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=23.43 E-value=3.3e+02 Score=20.51 Aligned_cols=42 Identities=17% Similarity=0.359 Sum_probs=26.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 70 YFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQ 111 (259)
Q Consensus 70 ~~~~~~~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el~ 111 (259)
.+.+|.++.+.|+...+...+-+...+..+...+..++..+.
T Consensus 74 s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~ 115 (120)
T PF02996_consen 74 SLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQ 115 (120)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666666666665544
No 181
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=23.33 E-value=8.6e+02 Score=25.33 Aligned_cols=16 Identities=6% Similarity=0.231 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy7929 28 RELDSRAQDVMKTIDR 43 (259)
Q Consensus 28 relD~~~~~~~~~i~~ 43 (259)
.+...++.+++..+++
T Consensus 507 ~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 507 GEFKEEINVLIEKLSA 522 (771)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 3334444444444433
No 182
>KOG4721|consensus
Probab=23.32 E-value=8.3e+02 Score=25.15 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=27.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q psy7929 76 EYGDDKVQLAIQTYEMVDKYIRKLDT---DLARFEQEIQE 112 (259)
Q Consensus 76 ~l~dEKv~LA~~a~dlVd~hirrLD~---dl~~~e~el~~ 112 (259)
+.=+.|++-++++|+-+...+-+|+. +|+.-|..++.
T Consensus 428 ~~YE~KLertN~ly~eLs~cm~qLelkEkElaerEq~l~r 467 (904)
T KOG4721|consen 428 EHYERKLERTNNLYMELSACMLQLELKEKELAEREQALER 467 (904)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44478999999999999999888864 45555544444
No 183
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=23.24 E-value=4.6e+02 Score=22.11 Aligned_cols=104 Identities=17% Similarity=0.218 Sum_probs=59.9
Q ss_pred HHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCC-------CChhH-HHHHHHHHHHHHHHHH
Q psy7929 7 EQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTI---DRVAEDYLDNMKH-------YSKDK-KKETLAEIQKYFDKTK 75 (259)
Q Consensus 7 edfld~ie~LP~El~r~l~~irelD~~~~~~~~~i---~~~~~~~~~~~~~-------~~~~~-~~~~~~~I~~~~~~~~ 75 (259)
+++-..++.|-.+..-+-.++.+++..+..+...- ...+..++..... ..+.+ ....-.-|...+..+.
T Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~e~~~~~~~~~~~p~y~~Mi~~L~~qvk 121 (177)
T PF03234_consen 42 EERKQEIEELKYERKINEKLLKRIQKLLSALDKEEEADKQEVMESLNEPFDKKEKPGVENKDPEQPTYDEMIEDLLDQVK 121 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhcccccccccccccCCCCCCCHHHHHHHHHHHHh
Confidence 45556667777777777777777777776665541 1223333332210 11111 1122234566666666
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 76 EYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQE 112 (259)
Q Consensus 76 ~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el~~ 112 (259)
...+++- ...+...|..|..+|+.....+...+..
T Consensus 122 ~~~de~~--~~~~~~~l~~H~~kl~~~~ke~~~kLee 156 (177)
T PF03234_consen 122 KEPDEKS--GKAELEELQEHRAKLEKEQKELKKKLEE 156 (177)
T ss_pred cccCccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655 7788888889988888776666555443
No 184
>PF08535 KorB: KorB domain; InterPro: IPR013741 This entry contains several KorB transcriptional repressor proteins. The korB gene is a major regulatory element in the replication and maintenance of broad host-range plasmid RK2. It negatively controls the replication gene trfA, the host-lethal determinants kilA and kilB, and the korA-korB operon []. This domain includes the DNA-binding HTH motif []. ; PDB: 1R71_C.
Probab=23.22 E-value=3e+02 Score=20.02 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=16.2
Q ss_pred hhhhHHHHHHHhhcccHHHHHhHH
Q psy7929 2 STSYLEQYLDSLDSLPIELQRNFT 25 (259)
Q Consensus 2 ~~~yLedfld~ie~LP~El~r~l~ 25 (259)
+-.|+.+|+- +-+||.+|+..+.
T Consensus 16 s~s~Vs~~l~-Ll~lP~~i~~~v~ 38 (93)
T PF08535_consen 16 SRSWVSNHLA-LLDLPEEIKELVR 38 (93)
T ss_dssp -HHHHHHHHG-GGS--HHHHHHHH
T ss_pred CHHHHHHHHH-HHcCCHHHHHHHH
Confidence 3468889998 5679999997776
No 185
>KOG1937|consensus
Probab=23.07 E-value=7.2e+02 Score=24.35 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=13.9
Q ss_pred HHHHHhhcccHHHHHh--HHHHHHHHHH
Q psy7929 8 QYLDSLDSLPIELQRN--FTLMRELDSR 33 (259)
Q Consensus 8 dfld~ie~LP~El~r~--l~~irelD~~ 33 (259)
.....++.||.+++|. -..|+|+|.-
T Consensus 370 ~Lrsele~lp~dv~rk~ytqrikEi~gn 397 (521)
T KOG1937|consen 370 KLRSELEKLPDDVQRKVYTQRIKEIDGN 397 (521)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHhH
Confidence 3445567777766653 2344444443
No 186
>PHA03158 hypothetical protein; Provisional
Probab=23.07 E-value=1.3e+02 Score=25.91 Aligned_cols=34 Identities=15% Similarity=0.274 Sum_probs=24.8
Q ss_pred HHhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Q psy7929 75 KEYGDDKVQLAIQTYEMVDK------YIRKLDTDLARFEQ 108 (259)
Q Consensus 75 ~~l~dEKv~LA~~a~dlVd~------hirrLD~dl~~~e~ 108 (259)
..-+.||..|.+|++..-.+ |++.|+.+++.++.
T Consensus 229 v~t~~EK~~~~kQllka~kkc~~~s~~~~~leeei~elek 268 (273)
T PHA03158 229 IKTAKEKAAILKQLLKAAKKCCKNSEHEKELEEEIEELEK 268 (273)
T ss_pred eecHHHhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 45678999999988877654 66777777766654
No 187
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=23.04 E-value=7.9e+02 Score=24.78 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=23.6
Q ss_pred hHHHHHHHhh-cccHHHHHhHHHHHHHHHHHHHHHHHH
Q psy7929 5 YLEQYLDSLD-SLPIELQRNFTLMRELDSRAQDVMKTI 41 (259)
Q Consensus 5 yLedfld~ie-~LP~El~r~l~~irelD~~~~~~~~~i 41 (259)
.++++++.+. .....+...+..+.++..+..++.++|
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l 414 (650)
T TIGR03185 377 QLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKI 414 (650)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666555 356667777777777777776666655
No 188
>KOG1318|consensus
Probab=22.91 E-value=6.9e+02 Score=24.05 Aligned_cols=75 Identities=15% Similarity=0.285 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHhcCCCChh-----HHH----------HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy7929 30 LDSRAQDVMKTID----RVAEDYLDNMKHYSKD-----KKK----------ETLAEIQKYFDKTKEYGDDKVQLAIQTYE 90 (259)
Q Consensus 30 lD~~~~~~~~~i~----~~~~~~~~~~~~~~~~-----~~~----------~~~~~I~~~~~~~~~l~dEKv~LA~~a~d 90 (259)
.|.+-.+..++|+ ..|+.+|+..+.+-|. -+. ..++++++..++++++...+-.|.
T Consensus 229 rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le----- 303 (411)
T KOG1318|consen 229 RDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLE----- 303 (411)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHH-----
Confidence 3444444444554 4577788777654221 111 233444555555555554443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy7929 91 MVDKYIRKLDTDLARFEQEIQE 112 (259)
Q Consensus 91 lVd~hirrLD~dl~~~e~el~~ 112 (259)
.-++.|-..++.|+.+...
T Consensus 304 ---~~n~~L~~rieeLk~~~~~ 322 (411)
T KOG1318|consen 304 ---STNQELALRIEELKSEAGR 322 (411)
T ss_pred ---hHHHHHHHHHHHHHHHHHH
Confidence 3344444445555554443
No 189
>KOG4674|consensus
Probab=22.86 E-value=1e+03 Score=27.52 Aligned_cols=57 Identities=9% Similarity=0.310 Sum_probs=44.6
Q ss_pred ChhHH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 56 SKDKK--KETLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQE 112 (259)
Q Consensus 56 ~~~~~--~~~~~~I~~~~~~~~~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el~~ 112 (259)
++.++ ...+++++..|..+..-..+.+.+.+..++-+..-+..|-.++.++......
T Consensus 628 t~~~~~~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~f 686 (1822)
T KOG4674|consen 628 TEAPRAKEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNL 686 (1822)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34455 5677888888888888888888888888888888888888888777765544
No 190
>PHA02414 hypothetical protein
Probab=22.86 E-value=3.5e+02 Score=20.64 Aligned_cols=69 Identities=12% Similarity=0.275 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCC----hhHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 30 LDSRAQDVMKTIDRVAEDYLDNMKHYS----KDKKK---ETLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTD 102 (259)
Q Consensus 30 lD~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~---~~~~~I~~~~~~~~~l~dEKv~LA~~a~dlVd~hirrLD~d 102 (259)
.|..++++..+++..-.+. +.|.++ ..+-. .-++.|--.+++-..+..|| +.-|-=+|.|||..
T Consensus 2 ~D~~in~Lv~~v~~ledKi--Q~Gelt~kgdn~eL~~av~ELRdivvslDKd~Av~sEK-------qshi~yQi~~Lee~ 72 (111)
T PHA02414 2 MDKEINNLVSQVETLEDKI--QEGELTDKGDNKELEVAVAELRDIVVSLDKDVAVNSEK-------QSHIYYQIERLEEK 72 (111)
T ss_pred cchHHHHHHHHHHHHHHHH--hcCccccCCchHHHHHHHHHHHHHHHHhhhHhhhhHHH-------hhHHHHHHHHHHHH
Confidence 4566666666665544443 122221 11111 22333444444444444554 44555567777777
Q ss_pred HHHHH
Q psy7929 103 LARFE 107 (259)
Q Consensus 103 l~~~e 107 (259)
+..++
T Consensus 73 i~aL~ 77 (111)
T PHA02414 73 ISALA 77 (111)
T ss_pred HHHHH
Confidence 76665
No 191
>KOG4466|consensus
Probab=22.82 E-value=5.9e+02 Score=23.21 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=18.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 76 EYGDDKVQLAIQTYEMVDKYIRKLDTDLARF 106 (259)
Q Consensus 76 ~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~ 106 (259)
++-.+|+.|=..++--++..+|+|+.+-..|
T Consensus 105 e~E~~~~lLke~l~seleeKkrkieeeR~sm 135 (291)
T KOG4466|consen 105 EYESKKKLLKENLISELEEKKRKIEEERLSM 135 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4455666666666666666677666654333
No 192
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=22.73 E-value=2.6e+02 Score=22.51 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=22.5
Q ss_pred hHHHHHHHh--hcccHHHHHhHHHHHHHHHHHHH
Q psy7929 5 YLEQYLDSL--DSLPIELQRNFTLMRELDSRAQD 36 (259)
Q Consensus 5 yLedfld~i--e~LP~El~r~l~~irelD~~~~~ 36 (259)
-|++||..+ ..|+.|+...|.+|...=.+..+
T Consensus 85 TLN~fL~~~~e~dl~Pevlk~fe~m~~~a~~~a~ 118 (134)
T PF08400_consen 85 TLNDFLTAPDEDDLRPEVLKRFEEMVAQAARSAE 118 (134)
T ss_pred cHHHHhhccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 388999753 67999999888877765443333
No 193
>KOG1011|consensus
Probab=22.73 E-value=2.9e+02 Score=28.48 Aligned_cols=91 Identities=24% Similarity=0.403 Sum_probs=53.3
Q ss_pred ccHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcC-----CCChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy7929 16 LPIELQRNFTLM--RELDSRAQDVMKTIDRVAEDYLDNMK-----HYSKDKKKETLAEIQKYFDKTKEYGDDKVQLAIQT 88 (259)
Q Consensus 16 LP~El~r~l~~i--relD~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~I~~~~~~~~~l~dEKv~LA~~a 88 (259)
|--.|-..|.-| +|||+.+.+.++++.-.++..+.... ++.|+ -.+...++-..+.++..-+..|-.+|+.+
T Consensus 857 lrvqlekmfeamggkeld~ea~d~lk~lqvkln~vldels~~f~tsfqph-i~e~v~qmg~il~qvkgt~~a~~sva~da 935 (1283)
T KOG1011|consen 857 LRVQLEKMFEAMGGKELDEEAGDVLKELQVKLNSVLDELSAVFVTSFQPH-IHECVIQMGDILVQVKGTGLAKTSVAQDA 935 (1283)
T ss_pred HHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-HHHHHHHHHHHHhhhcccccchhhcccch
Confidence 333444555555 47899988888887665555444221 23332 11344456666667777777777777776
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7929 89 YEMVDKYIRKLDTDLARFE 107 (259)
Q Consensus 89 ~dlVd~hirrLD~dl~~~e 107 (259)
-..+.--+.-||..|..|.
T Consensus 936 d~vl~plmdlldgnlt~fa 954 (1283)
T KOG1011|consen 936 DAVLEPLMDLLDGNLTLFA 954 (1283)
T ss_pred HHHHHHHHHHHhchHHHHH
Confidence 6666655555665555443
No 194
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=22.72 E-value=3.3e+02 Score=20.29 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy7929 92 VDKYIRKLDTDLARFEQEIQE 112 (259)
Q Consensus 92 Vd~hirrLD~dl~~~e~el~~ 112 (259)
|...|..|+..+..++.++..
T Consensus 79 lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 79 LKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777666666654
No 195
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=22.63 E-value=5.1e+02 Score=22.49 Aligned_cols=60 Identities=10% Similarity=0.225 Sum_probs=43.2
Q ss_pred CCChhHHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q psy7929 54 HYSKDKKKE---TLAEIQKYFDKTKEYGDDKVQLAIQTYEMVD-------KYIRKLDTDLARFEQEIQEK 113 (259)
Q Consensus 54 ~~~~~~~~~---~~~~I~~~~~~~~~l~dEKv~LA~~a~dlVd-------~hirrLD~dl~~~e~el~~~ 113 (259)
+++++++.. ....|+..+=.+..++.+.+.||..+.+.|- ..-.+|..-+..|...+...
T Consensus 42 ~L~~~Q~q~l~~Y~~~lr~~lP~~~~~a~d~l~la~~ald~V~~~~~g~~~~~~~l~~l~~~l~~~~~~~ 111 (229)
T PF11101_consen 42 SLNAEQQQALQQYQQGLRQQLPWVVQLASDGLELARDALDEVATSLLGDSNARDRLKQLMDQLKQQVDRR 111 (229)
T ss_pred cCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHH
Confidence 355655553 3357999999999999999999999998874 34455666666666665554
No 196
>PF05596 Taeniidae_ag: Taeniidae antigen; InterPro: IPR008860 This family consists of several antigen proteins from Taenia and Echinococcus (tapeworm) species.
Probab=22.53 E-value=2.5e+02 Score=19.63 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=26.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7929 21 QRNFTLMRELDSRAQDVMKTIDRVAEDYLDNM 52 (259)
Q Consensus 21 ~r~l~~irelD~~~~~~~~~i~~~~~~~~~~~ 52 (259)
+.+..+.+++.+.+++++..|...+.+|++..
T Consensus 30 qkIa~l~kdw~~~~~~~r~KiR~~L~ey~k~L 61 (64)
T PF05596_consen 30 QKIAQLAKDWNEICQEVRKKIRAALAEYCKGL 61 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55668888999999999999998888888743
No 197
>KOG4515|consensus
Probab=22.50 E-value=5e+02 Score=22.27 Aligned_cols=20 Identities=0% Similarity=0.099 Sum_probs=8.0
Q ss_pred HHHHHhHHHHHHHHHHHHHH
Q psy7929 18 IELQRNFTLMRELDSRAQDV 37 (259)
Q Consensus 18 ~El~r~l~~irelD~~~~~~ 37 (259)
.|=.+....+++.|..+..+
T Consensus 113 ~dQn~lv~r~K~v~~s~~tL 132 (217)
T KOG4515|consen 113 ADQNKLVARCKSVEASMITL 132 (217)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 33333334444444443333
No 198
>KOG2176|consensus
Probab=22.44 E-value=8.1e+02 Score=25.65 Aligned_cols=47 Identities=21% Similarity=0.264 Sum_probs=24.6
Q ss_pred hhhHHHHHHHhhcc---cHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 3 TSYLEQYLDSLDSL---PIELQRNFTLMRELDSRAQDVMKTIDRVAEDYL 49 (259)
Q Consensus 3 ~~yLedfld~ie~L---P~El~r~l~~irelD~~~~~~~~~i~~~~~~~~ 49 (259)
..+-++|+++|+.| -.+++..=++|-.++.+.|+.-+++-...+.++
T Consensus 69 n~hyQdFidsIdEL~~Vr~daq~Lks~vsd~N~rLQ~~g~eLiv~~e~lv 118 (800)
T KOG2176|consen 69 NFHYQDFIDSIDELLKVRGDAQKLKSQVSDTNRRLQESGKELIVKKEDLV 118 (800)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 45667787777543 234444444455555555555555544444443
No 199
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=22.40 E-value=6.5e+02 Score=23.62 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHhhHHH
Q psy7929 62 ETLAEIQKYFDKTKEYGDDK 81 (259)
Q Consensus 62 ~~~~~I~~~~~~~~~l~dEK 81 (259)
..+.+|.+.+.+++.--+||
T Consensus 301 ~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 301 RELAEISEELEQVKQEMEER 320 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444
No 200
>KOG4057|consensus
Probab=22.24 E-value=4.5e+02 Score=21.70 Aligned_cols=36 Identities=17% Similarity=0.350 Sum_probs=22.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 74 TKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQEKA 114 (259)
Q Consensus 74 ~~~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el~~~~ 114 (259)
+++|+.|| ++--+++..-..+-.-+..+|.+|.+.+
T Consensus 32 iqeLgKEK-----~~~kn~e~qa~~F~ksit~VE~eLSaQi 67 (180)
T KOG4057|consen 32 IQELGKEK-----QIGKNMEDQANNFKKSITQVENELSAQI 67 (180)
T ss_pred HHHHhHHh-----hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566665 3444466667777777777777777653
No 201
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=22.18 E-value=4e+02 Score=23.08 Aligned_cols=46 Identities=20% Similarity=0.362 Sum_probs=22.4
Q ss_pred hHHHHHHHh-hcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 5 YLEQYLDSL-DSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLD 50 (259)
Q Consensus 5 yLedfld~i-e~LP~El~r~l~~irelD~~~~~~~~~i~~~~~~~~~ 50 (259)
||+.|+..- ..|.....-.=..|+.++.+...+...++.+...|.+
T Consensus 179 ~l~~~~~~~~G~i~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~ 225 (239)
T PF07195_consen 179 YLDSYTGSSTGSITSRIDSLNSQIKSLDKQIEDLEERLESKEERLRK 225 (239)
T ss_pred HHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433 3444444444455555555555555555554444433
No 202
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=22.11 E-value=3.6e+02 Score=20.74 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy7929 87 QTYEMVDKYIRKLDTDLARFEQ 108 (259)
Q Consensus 87 ~a~dlVd~hirrLD~dl~~~e~ 108 (259)
....++++|+..|+..++.+..
T Consensus 80 ~~~~~l~~~~~~l~~~~~~l~~ 101 (118)
T cd04776 80 KMLEKIEKRRAELEQQRRDIDA 101 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666555543
No 203
>KOG4451|consensus
Probab=21.91 E-value=5e+02 Score=23.06 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=31.6
Q ss_pred hHHHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy7929 5 YLEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDR 43 (259)
Q Consensus 5 yLedfld~ie~LP~El~r~l~~irelD~~~~~~~~~i~~ 43 (259)
-||+|-..++.|=.|=--++++||++-+.+.++.+.|++
T Consensus 51 ~leey~~em~~lL~ekm~Hveelr~iHadiN~men~ikq 89 (286)
T KOG4451|consen 51 NLEEYELEMGVLLLEKMGHVEELREIHADINEMENDIKQ 89 (286)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 378888888888888888899999998888888776654
No 204
>PF10979 DUF2786: Protein of unknown function (DUF2786); InterPro: IPR024498 This domain is found in proteins that have no known function.
Probab=21.82 E-value=2.3e+02 Score=18.06 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q psy7929 65 AEIQKYFDKTK 75 (259)
Q Consensus 65 ~~I~~~~~~~~ 75 (259)
.+|+..+..+.
T Consensus 5 ~kI~kLLalA~ 15 (43)
T PF10979_consen 5 EKIRKLLALAE 15 (43)
T ss_pred HHHHHHHHHhh
Confidence 33444444433
No 205
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=21.62 E-value=2.9e+02 Score=19.26 Aligned_cols=20 Identities=25% Similarity=0.562 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q psy7929 58 DKKKETLAEIQKYFDKTKEY 77 (259)
Q Consensus 58 ~~~~~~~~~I~~~~~~~~~l 77 (259)
++|...+..|+..+.++.++
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~ 40 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEEL 40 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666655555443
No 206
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=21.44 E-value=2.4e+02 Score=20.48 Aligned_cols=31 Identities=10% Similarity=0.127 Sum_probs=22.4
Q ss_pred cHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 17 PIELQRNFTLMRELDSRAQDVMKTIDRVAED 47 (259)
Q Consensus 17 P~El~r~l~~irelD~~~~~~~~~i~~~~~~ 47 (259)
|.|+......+-++|+++.-...++-+.+-+
T Consensus 14 ~~d~~~i~~rLD~iEeKVEftn~Ei~Qr~Gk 44 (77)
T PRK01026 14 PKDFKEIQKRLDEIEEKVEFTNAEIFQRIGK 44 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 5678877888888888887777776655443
No 207
>KOG2129|consensus
Probab=21.42 E-value=7.6e+02 Score=23.99 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=9.5
Q ss_pred ccHHHHHhHHHHHH
Q psy7929 16 LPIELQRNFTLMRE 29 (259)
Q Consensus 16 LP~El~r~l~~ire 29 (259)
|-++|-|.|..+|.
T Consensus 130 lTn~Lsrkl~qLr~ 143 (552)
T KOG2129|consen 130 LTNPLSRKLKQLRH 143 (552)
T ss_pred ccCchhHHHHHHHh
Confidence 45677777777773
No 208
>PF13865 FoP_duplication: C-terminal duplication domain of Friend of PRMT1
Probab=21.39 E-value=1.7e+02 Score=20.83 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=13.3
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHh
Q psy7929 29 ELDSRAQDVM----KTIDRVAEDYLDN 51 (259)
Q Consensus 29 elD~~~~~~~----~~i~~~~~~~~~~ 51 (259)
|||+++.+.+ ..||..+..|+..
T Consensus 44 eLDaELD~Ym~~~~~~LD~~Ld~Y~~~ 70 (74)
T PF13865_consen 44 ELDAELDAYMSKTKSKLDAELDSYMSK 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555554444 4467777777764
No 209
>PRK10626 hypothetical protein; Provisional
Probab=21.27 E-value=5e+02 Score=23.02 Aligned_cols=40 Identities=10% Similarity=0.091 Sum_probs=31.4
Q ss_pred CChhHHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy7929 55 YSKDKKKE---TLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDK 94 (259)
Q Consensus 55 ~~~~~~~~---~~~~I~~~~~~~~~l~dEKv~LA~~a~dlVd~ 94 (259)
+++.++.. .-..|+..+=.+.+++.+.|.+|.++.|.|--
T Consensus 65 L~~~Qqq~~~~Yq~~lr~~lP~i~~~a~~~l~~A~~alD~Vi~ 107 (239)
T PRK10626 65 LNAAQRQQAKDYQAALRQDLPWIDEGAKSRLEKARVALDKVIV 107 (239)
T ss_pred CCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555552 22578889999999999999999999998753
No 210
>COG1536 FliG Flagellar motor switch protein [Cell motility and secretion]
Probab=21.08 E-value=6.8e+02 Score=23.33 Aligned_cols=101 Identities=17% Similarity=0.266 Sum_probs=63.3
Q ss_pred HHHHHHhhcccHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------------------CChhHHHHHHHHH
Q psy7929 7 EQYLDSLDSLPIELQRNF-TLMRELDSRAQDVMKTIDRVAEDYLDNMKH------------------YSKDKKKETLAEI 67 (259)
Q Consensus 7 edfld~ie~LP~El~r~l-~~irelD~~~~~~~~~i~~~~~~~~~~~~~------------------~~~~~~~~~~~~I 67 (259)
+.+.+.+.+||.|++..+ ..|..++.......++++..++.-+....+ ++.......+..|
T Consensus 147 ~~aa~vL~~l~~e~r~~v~~Ria~l~~v~p~al~~i~~~l~~~l~~~~~~~~~~~gg~~~~aeIlN~~d~~~e~~il~~l 226 (339)
T COG1536 147 DQAAEILSTLPEELRADVVKRIATLEGVSPEALAELENVLEKKLQSLVNEDYSKLGGIKAAAEILNLLDRGTEKTILESL 226 (339)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhccccccccccHhHHHHHHHhcchhHHHHHHHHH
Confidence 467788999999998754 457777777777777777776555443311 1111111233333
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 68 QKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFE 107 (259)
Q Consensus 68 ~~~~~~~~~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e 107 (259)
...=....+--.+|+-+...+..+.++-|.+|=.++..+.
T Consensus 227 ~~~~~~la~~I~~kmF~Fediv~ldd~~iq~lL~~v~~~~ 266 (339)
T COG1536 227 EEEDPELAEEIKEKMFVFEDIVLLDDRSIQRLLREVDKED 266 (339)
T ss_pred hhcCHHHHHHHHHHHhhHHHHHhccHHHHHHHHHHcCHHH
Confidence 3333444455667888888888888888887766665554
No 211
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=20.93 E-value=7.4e+02 Score=23.68 Aligned_cols=35 Identities=20% Similarity=0.415 Sum_probs=20.9
Q ss_pred cccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 15 SLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYL 49 (259)
Q Consensus 15 ~LP~El~r~l~~irelD~~~~~~~~~i~~~~~~~~ 49 (259)
..+..+...+.+++|+-.....+...++.....|.
T Consensus 209 ~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~ 243 (395)
T PF10267_consen 209 QQNLGLQKILEELREIKESQSRLEESIEKLKEQYQ 243 (395)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666677666666666666555544443
No 212
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=20.83 E-value=9e+02 Score=24.62 Aligned_cols=31 Identities=6% Similarity=0.101 Sum_probs=18.5
Q ss_pred hcccHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy7929 14 DSLPIELQRNFTLMRELDSRAQDVMKTIDRV 44 (259)
Q Consensus 14 e~LP~El~r~l~~irelD~~~~~~~~~i~~~ 44 (259)
+..+-|+.-....|+.++.++..+..++..+
T Consensus 411 ~~e~~ei~~~~~~i~~~~~~ve~l~~e~~~L 441 (652)
T COG2433 411 EEERREITVYEKRIKKLEETVERLEEENSEL 441 (652)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666555433
No 213
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=20.73 E-value=7.5e+02 Score=23.65 Aligned_cols=70 Identities=13% Similarity=0.340 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHhhH---------HHHHHHHHHHHHHHHHHH
Q psy7929 27 MRELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGD---------DKVQLAIQTYEMVDKYIR 97 (259)
Q Consensus 27 irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~d---------EKv~LA~~a~dlVd~hir 97 (259)
+.++..+++.+.+++........+ |+..+........ +.+......+..+...++
T Consensus 329 ~~~l~~~~~~l~~~~~~~~~~l~~----------------l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 392 (451)
T PF03961_consen 329 RPELKEKLEELEEELEELKEELEK----------------LKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELK 392 (451)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q psy7929 98 KLDTDLARFEQEIQE 112 (259)
Q Consensus 98 rLD~dl~~~e~el~~ 112 (259)
+|+..+..++.++..
T Consensus 393 ~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 393 ELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHh
No 214
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=20.72 E-value=4.8e+02 Score=23.99 Aligned_cols=22 Identities=9% Similarity=0.356 Sum_probs=13.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH
Q psy7929 72 DKTKEYGDDKVQLAIQTYEMVD 93 (259)
Q Consensus 72 ~~~~~l~dEKv~LA~~a~dlVd 93 (259)
...+...+.||.|..-+.|||.
T Consensus 48 ~~lq~~L~~kI~IvspAIDLIe 69 (302)
T PF05508_consen 48 EKLQRRLESKIKIVSPAIDLIE 69 (302)
T ss_pred HHHHHHHHhhhhccccHHHHHH
Confidence 3344555677777777777765
No 215
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=20.69 E-value=6.9e+02 Score=24.59 Aligned_cols=40 Identities=8% Similarity=0.122 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 66 EIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLAR 105 (259)
Q Consensus 66 ~I~~~~~~~~~l~dEKv~LA~~a~dlVd~hirrLD~dl~~ 105 (259)
+|........+++=||+..--..++.+++|++.--+.|..
T Consensus 418 km~rL~~~~iq~qleKlk~Kl~~~k~L~~~~~L~rqeLd~ 457 (531)
T COG5259 418 KMERLRNVLIQAQLEKLKMKLGHLKELEKSTSLERQELDA 457 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666777888888888888888887765555544
No 216
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=20.65 E-value=2e+02 Score=26.85 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=27.0
Q ss_pred HhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy7929 12 SLDSLPIELQRNFTLMRELDSRAQDVMKTIDRV 44 (259)
Q Consensus 12 ~ie~LP~El~r~l~~irelD~~~~~~~~~i~~~ 44 (259)
.|..||..+++.+..|+.|..++..+..+....
T Consensus 31 ~i~~Lp~~~~~rv~aL~~lQ~e~~~le~ef~~e 63 (337)
T PTZ00007 31 KLSHLTDEQRETLKKLQLLQKEFDDLEVEYNAE 63 (337)
T ss_pred hhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366899999999999999988888877765443
No 217
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=20.63 E-value=6.7e+02 Score=23.03 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=11.9
Q ss_pred hhcccHHHHHhHHHHHHHHHHHH
Q psy7929 13 LDSLPIELQRNFTLMRELDSRAQ 35 (259)
Q Consensus 13 ie~LP~El~r~l~~irelD~~~~ 35 (259)
++.|-..|.+++..|+.=+..+.
T Consensus 142 legLk~~L~~~~~~l~~D~~~L~ 164 (312)
T smart00787 142 LEGLKEGLDENLEGLKEDYKLLM 164 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566655555444433
No 218
>KOG0976|consensus
Probab=20.61 E-value=1e+03 Score=25.28 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=24.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 20 LQRNFTLMRELDSRAQDVMKTIDRVAEDYLD 50 (259)
Q Consensus 20 l~r~l~~irelD~~~~~~~~~i~~~~~~~~~ 50 (259)
++..-+.|+|.|.-.+...++|......|-.
T Consensus 247 ~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~ 277 (1265)
T KOG0976|consen 247 LRKTCSMIEEQDMDLQASAKEIEEKMRQLKA 277 (1265)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999888888877776643
No 219
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=20.59 E-value=3.1e+02 Score=19.20 Aligned_cols=21 Identities=0% Similarity=-0.034 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHH
Q psy7929 61 KETLAEIQKYFDKTKEYGDDK 81 (259)
Q Consensus 61 ~~~~~~I~~~~~~~~~l~dEK 81 (259)
...+..+...+.+++-+..||
T Consensus 43 ~~~ir~~RrdIARikTil~ek 63 (67)
T CHL00154 43 PHLFKHKKHRLAQLLTLLSSR 63 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777777666665
No 220
>PRK14127 cell division protein GpsB; Provisional
Probab=20.51 E-value=2.2e+02 Score=22.10 Aligned_cols=38 Identities=11% Similarity=0.312 Sum_probs=21.0
Q ss_pred hHHHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy7929 5 YLEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTID 42 (259)
Q Consensus 5 yLedfld~ie~LP~El~r~l~~irelD~~~~~~~~~i~ 42 (259)
||++-++.++.|=.|+.+.-.++..|..++.++..++.
T Consensus 31 FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 31 FLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55555555555555555555555555555555555443
No 221
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=20.41 E-value=5.4e+02 Score=21.89 Aligned_cols=38 Identities=29% Similarity=0.324 Sum_probs=29.9
Q ss_pred hHHHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy7929 5 YLEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTID 42 (259)
Q Consensus 5 yLedfld~ie~LP~El~r~l~~irelD~~~~~~~~~i~ 42 (259)
-|..|-+.=..||.-|+++-.+||-|-.++........
T Consensus 48 AL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r 85 (194)
T PF15619_consen 48 ALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQER 85 (194)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777788889999999999999988887777665543
No 222
>PF10789 Phage_RpbA: Phage RNA polymerase binding, RpbA; InterPro: IPR019725 Upon infection, the RpbA encoded phage protein binds to the ADP-ribosylated core RNA polymerase and modulates function to preferentially bind T4 promoters. This is a non-essential protein to the phage life cycle.
Probab=20.41 E-value=4.2e+02 Score=20.58 Aligned_cols=35 Identities=23% Similarity=0.491 Sum_probs=27.4
Q ss_pred HHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy7929 7 EQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDR 43 (259)
Q Consensus 7 edfld~ie~LP~El~r~l~~irelD~~~~~~~~~i~~ 43 (259)
+.-.+.+.+||.+++ |.+.+++|..+.+.--++-+
T Consensus 29 d~~~~~lq~~pq~vR--f~lY~~iD~~V~~~wi~Lm~ 63 (108)
T PF10789_consen 29 DEDKERLQAMPQDVR--FELYKEIDEDVSDKWIELMR 63 (108)
T ss_pred HHHHHHHHhCcHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 455678899999965 78899999999977666543
No 223
>KOG2751|consensus
Probab=20.32 E-value=8e+02 Score=23.81 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy7929 25 TLMRELDSRAQDVMKTID 42 (259)
Q Consensus 25 ~~irelD~~~~~~~~~i~ 42 (259)
.++-.+|.++..+.++++
T Consensus 143 ~l~~~ld~e~~~~~~e~~ 160 (447)
T KOG2751|consen 143 VLLNKLDKEVEDAEDEVD 160 (447)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555554443
No 224
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=20.32 E-value=4e+02 Score=20.29 Aligned_cols=33 Identities=30% Similarity=0.471 Sum_probs=24.5
Q ss_pred hhHHHHHHHhhcccHHHHHhHHHHHHHHHHHHH
Q psy7929 4 SYLEQYLDSLDSLPIELQRNFTLMRELDSRAQD 36 (259)
Q Consensus 4 ~yLedfld~ie~LP~El~r~l~~irelD~~~~~ 36 (259)
.++++++..+.+=|.-+.-.|..++.+.+.+.+
T Consensus 26 ~~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~ 58 (148)
T PF08389_consen 26 DFLEDLLQLLQSSPQHLELVLRILRILPEEITD 58 (148)
T ss_dssp THHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHhccchhHHHHHHHHHHHHHHHHHh
Confidence 367777777777677777778888888877775
No 225
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.28 E-value=3e+02 Score=25.43 Aligned_cols=10 Identities=20% Similarity=0.810 Sum_probs=5.7
Q ss_pred HHHHHHhhcc
Q psy7929 7 EQYLDSLDSL 16 (259)
Q Consensus 7 edfld~ie~L 16 (259)
++||+.++.|
T Consensus 96 NdYLE~vEdi 105 (309)
T TIGR00570 96 NDYLEEVEDI 105 (309)
T ss_pred HHHHHHHHHH
Confidence 5666666543
No 226
>KOG4673|consensus
Probab=20.07 E-value=1e+03 Score=24.86 Aligned_cols=39 Identities=23% Similarity=0.175 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 62 ETLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLD 100 (259)
Q Consensus 62 ~~~~~I~~~~~~~~~l~dEKv~LA~~a~dlVd~hirrLD 100 (259)
+++..++....+...+.+.|-..-.+..+.|.+|..-+.
T Consensus 495 e~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~ 533 (961)
T KOG4673|consen 495 ELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELT 533 (961)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 466677888888888888888888888888888865443
No 227
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.00 E-value=1.2e+03 Score=25.79 Aligned_cols=42 Identities=12% Similarity=0.246 Sum_probs=24.6
Q ss_pred HHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 7 EQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDY 48 (259)
Q Consensus 7 edfld~ie~LP~El~r~l~~irelD~~~~~~~~~i~~~~~~~ 48 (259)
.++-..++.|=.++...-..|.+++..+..+...++.....+
T Consensus 884 ~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 925 (1311)
T TIGR00606 884 QQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEK 925 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 344455555556666666666666666666666665554444
Done!