Query psy7929
Match_columns 259
No_of_seqs 197 out of 1196
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 22:28:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7929.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7929hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4afl_A P29ING4, inhibitor of g 100.0 7E-31 2.4E-35 202.2 13.4 103 2-104 2-104 (104)
2 1weu_A Inhibitor of growth fam 99.9 7.5E-22 2.6E-26 147.3 7.0 61 199-259 21-81 (91)
3 1wen_A Inhibitor of growth fam 99.8 8.6E-22 2.9E-26 140.9 5.7 57 203-259 5-61 (71)
4 2g6q_A Inhibitor of growth pro 99.8 2.2E-22 7.5E-27 140.3 1.9 53 206-258 3-55 (62)
5 3c6w_A P28ING5, inhibitor of g 99.8 1.3E-21 4.3E-26 135.1 1.9 51 208-258 3-53 (59)
6 2jmi_A Protein YNG1, ING1 homo 99.8 5.1E-21 1.7E-25 142.5 3.8 52 208-259 20-71 (90)
7 2vnf_A ING 4, P29ING4, inhibit 99.8 2.5E-21 8.7E-26 134.1 1.9 53 206-258 2-54 (60)
8 1x4i_A Inhibitor of growth pro 99.8 8E-21 2.7E-25 135.5 2.8 49 210-258 2-50 (70)
9 1wew_A DNA-binding family prot 99.6 9E-17 3.1E-21 117.0 4.1 53 205-258 7-67 (78)
10 2rsd_A E3 SUMO-protein ligase 99.5 4.5E-15 1.5E-19 105.1 3.6 51 207-258 3-60 (68)
11 3o70_A PHD finger protein 13; 99.4 4.8E-14 1.6E-18 99.8 3.4 47 209-258 14-62 (68)
12 3o7a_A PHD finger protein 13 v 99.4 5.4E-14 1.8E-18 94.3 2.3 43 213-258 3-47 (52)
13 1we9_A PHD finger family prote 99.3 3.3E-13 1.1E-17 94.2 3.2 45 211-258 3-53 (64)
14 1wem_A Death associated transc 99.3 2.1E-13 7.1E-18 98.5 2.0 46 209-258 12-65 (76)
15 1wep_A PHF8; structural genomi 99.3 1.4E-13 4.9E-18 100.1 0.8 46 211-259 9-59 (79)
16 3kqi_A GRC5, PHD finger protei 99.3 1.9E-13 6.6E-18 98.5 1.5 46 210-258 6-56 (75)
17 1wee_A PHD finger family prote 99.3 6.9E-13 2.3E-17 94.8 3.7 47 209-258 11-61 (72)
18 2k16_A Transcription initiatio 99.3 4.9E-13 1.7E-17 96.3 2.2 47 210-259 14-64 (75)
19 4gne_A Histone-lysine N-methyl 99.2 3.4E-12 1.2E-16 97.8 2.9 47 210-259 11-58 (107)
20 2xb1_A Pygopus homolog 2, B-ce 99.1 1.2E-11 4E-16 94.8 2.1 41 215-258 4-56 (105)
21 2vpb_A Hpygo1, pygopus homolog 99.1 1.2E-11 4E-16 86.6 0.3 41 216-259 11-62 (65)
22 2kgg_A Histone demethylase jar 99.1 2.4E-11 8.3E-16 81.3 1.1 42 216-259 5-50 (52)
23 2lv9_A Histone-lysine N-methyl 99.0 1.3E-10 4.4E-15 87.8 4.7 46 211-259 25-72 (98)
24 3kv5_D JMJC domain-containing 99.0 3.2E-11 1.1E-15 114.9 0.5 46 210-258 33-83 (488)
25 2yql_A PHD finger protein 21A; 99.0 2.4E-10 8.4E-15 77.5 3.7 41 213-258 8-51 (56)
26 1xwh_A Autoimmune regulator; P 99.0 2.1E-10 7.3E-15 80.4 3.2 41 213-258 7-50 (66)
27 2l5u_A Chromodomain-helicase-D 99.0 1.9E-10 6.4E-15 79.5 2.8 43 212-259 9-54 (61)
28 1f62_A Transcription factor WS 99.0 2E-10 6.9E-15 76.3 2.3 41 216-259 2-46 (51)
29 1mm2_A MI2-beta; PHD, zinc fin 98.9 3.9E-10 1.3E-14 77.8 3.6 42 213-259 8-52 (61)
30 2ku3_A Bromodomain-containing 98.9 3.6E-10 1.2E-14 80.3 2.7 44 212-258 14-61 (71)
31 2puy_A PHD finger protein 21A; 98.9 8.1E-10 2.8E-14 75.9 3.1 40 214-258 5-47 (60)
32 2l43_A N-teminal domain from h 98.8 1E-09 3.5E-14 81.3 2.9 42 214-258 25-70 (88)
33 2e6r_A Jumonji/ARID domain-con 98.8 1.5E-09 5.2E-14 81.0 3.7 43 213-258 15-61 (92)
34 2lri_C Autoimmune regulator; Z 98.7 5.3E-09 1.8E-13 73.3 3.5 40 215-259 13-55 (66)
35 2yt5_A Metal-response element- 98.6 1.5E-08 5.1E-13 70.7 3.5 46 210-258 2-56 (66)
36 1fp0_A KAP-1 corepressor; PHD 98.6 2.3E-08 8E-13 73.7 4.5 42 213-259 24-68 (88)
37 3asl_A E3 ubiquitin-protein li 98.6 1.3E-08 4.4E-13 72.1 2.7 39 218-259 23-65 (70)
38 2e6s_A E3 ubiquitin-protein li 98.6 3.7E-08 1.3E-12 71.0 3.6 41 216-259 28-73 (77)
39 3pur_A Lysine-specific demethy 98.4 6.1E-08 2.1E-12 92.3 2.3 32 225-259 56-90 (528)
40 2kwj_A Zinc finger protein DPF 98.3 1.6E-07 5.4E-12 72.6 2.5 40 216-258 60-103 (114)
41 1wev_A Riken cDNA 1110020M19; 98.3 1.7E-07 5.9E-12 69.2 1.7 43 213-258 15-67 (88)
42 3shb_A E3 ubiquitin-protein li 98.3 2.9E-07 1E-11 66.2 2.8 39 218-259 31-73 (77)
43 3ask_A E3 ubiquitin-protein li 98.2 3.5E-07 1.2E-11 78.5 2.4 41 216-259 176-221 (226)
44 3v43_A Histone acetyltransfera 98.2 1.1E-06 3.6E-11 67.7 3.6 41 216-259 63-108 (112)
45 2ysm_A Myeloid/lymphoid or mix 98.0 1.7E-06 6E-11 66.2 2.7 40 216-258 56-99 (111)
46 2lbm_A Transcriptional regulat 97.7 9.4E-06 3.2E-10 64.9 1.4 41 214-259 63-113 (142)
47 3ql9_A Transcriptional regulat 97.6 7.2E-06 2.5E-10 64.5 -0.2 41 213-258 56-106 (129)
48 2ysm_A Myeloid/lymphoid or mix 97.6 5E-05 1.7E-09 58.0 3.9 43 214-259 7-53 (111)
49 2kwj_A Zinc finger protein DPF 97.5 1.6E-05 5.5E-10 61.2 0.3 41 216-259 3-57 (114)
50 3v43_A Histone acetyltransfera 97.5 2.1E-05 7.1E-10 60.4 0.8 42 215-259 6-60 (112)
51 4bbq_A Lysine-specific demethy 95.9 0.0038 1.3E-07 47.7 2.6 31 226-259 74-110 (117)
52 2xzr_A Immunoglobulin-binding 95.7 0.27 9.2E-06 36.1 11.5 96 5-101 7-104 (114)
53 3a1b_A DNA (cytosine-5)-methyl 93.8 0.016 5.4E-07 46.8 0.9 44 211-257 76-128 (159)
54 2pv0_B DNA (cytosine-5)-methyl 93.3 0.022 7.6E-07 52.3 1.2 43 212-257 91-142 (386)
55 3ghg_A Fibrinogen alpha chain; 91.9 3.7 0.00013 38.9 14.0 99 18-116 60-160 (562)
56 2lq6_A Bromodomain-containing 89.9 0.22 7.5E-06 36.0 3.0 30 215-245 18-48 (87)
57 1m1j_C Fibrinogen gamma chain; 87.1 9.8 0.00033 35.1 12.9 36 6-41 25-61 (409)
58 1wil_A KIAA1045 protein; ring 86.5 0.55 1.9E-05 33.7 3.2 29 215-246 16-45 (89)
59 2qyw_A Vesicle transport throu 81.4 14 0.00047 27.1 11.4 83 25-110 15-101 (102)
60 1deq_A Fibrinogen (alpha chain 80.1 32 0.0011 31.2 12.8 19 92-110 139-157 (390)
61 1m1j_A Fibrinogen alpha subuni 79.8 34 0.0011 31.9 13.0 55 63-117 108-162 (491)
62 2ke4_A CDC42-interacting prote 78.9 9.7 0.00033 27.9 7.6 81 12-112 7-87 (98)
63 3sjb_C Golgi to ER traffic pro 73.4 17 0.00057 26.4 7.4 36 2-41 4-39 (93)
64 3ghg_B Fibrinogen beta chain; 73.1 27 0.00091 32.6 10.6 33 77-109 160-192 (461)
65 1m1j_A Fibrinogen alpha subuni 73.1 60 0.0021 30.2 13.5 18 87-104 139-156 (491)
66 3lhp_S 4E10_D0_1ISEA_004_N (T9 71.9 4.7 0.00016 30.9 4.4 33 79-111 89-121 (123)
67 1nfn_A Apolipoprotein E3; lipi 71.8 39 0.0013 27.5 10.5 49 3-51 30-81 (191)
68 4gne_A Histone-lysine N-methyl 68.7 4.3 0.00015 30.3 3.5 45 210-257 49-98 (107)
69 2qyw_A Vesicle transport throu 68.6 31 0.0011 25.1 9.0 74 3-76 14-96 (102)
70 3mq9_A Bone marrow stromal ant 68.4 70 0.0024 29.1 13.5 32 79-110 435-466 (471)
71 4fla_A Regulation of nuclear P 64.5 23 0.00078 28.0 7.2 92 10-107 45-141 (152)
72 1m1j_C Fibrinogen gamma chain; 63.8 11 0.00036 34.8 5.8 28 80-107 105-132 (409)
73 1m1j_B Fibrinogen beta chain; 60.8 1.1E+02 0.0037 28.6 13.7 16 96-111 177-192 (464)
74 1vyx_A ORF K3, K3RING; zinc-bi 60.3 2.4 8.2E-05 28.1 0.6 34 211-246 3-39 (60)
75 2enz_A NPKC-theta, protein kin 58.7 8.2 0.00028 25.6 3.1 33 213-248 22-58 (65)
76 2yuu_A NPKC-delta, protein kin 58.6 7.1 0.00024 27.4 2.9 33 213-248 27-63 (83)
77 2yf2_A C4B binding protein; im 58.4 31 0.0011 22.4 5.6 37 15-51 24-60 (65)
78 2e61_A Zinc finger CW-type PWW 58.1 7.2 0.00025 26.7 2.8 32 225-258 16-48 (69)
79 4gfq_A Ribosome-recycling fact 58.0 36 0.0012 28.3 7.6 33 79-111 175-207 (209)
80 2enn_A NPKC-theta, protein kin 57.7 5.7 0.0002 27.5 2.3 34 212-248 32-69 (77)
81 1vcs_A Vesicle transport throu 56.8 39 0.0013 24.6 6.9 78 31-112 11-92 (102)
82 2zdi_C Prefoldin subunit alpha 55.9 68 0.0023 24.7 9.7 46 68-113 93-138 (151)
83 3umh_A Amyloid beta A4 protein 55.3 64 0.0022 26.8 8.6 99 5-107 104-209 (211)
84 1ptq_A Protein kinase C delta 54.9 6.3 0.00022 24.5 1.9 32 213-247 10-45 (50)
85 1gs9_A Apolipoprotein E, APOE4 54.6 79 0.0027 25.1 11.7 55 4-58 31-88 (165)
86 1dd5_A Ribosome recycling fact 54.6 46 0.0016 27.1 7.6 33 79-111 151-183 (185)
87 2eli_A Protein kinase C alpha 54.6 10 0.00034 26.8 3.2 33 213-248 27-63 (85)
88 2d8s_A Cellular modulator of i 54.5 8.3 0.00028 26.9 2.7 31 214-246 15-50 (80)
89 3oja_B Anopheles plasmodium-re 53.1 1.4E+02 0.005 27.7 13.0 13 19-31 457-469 (597)
90 1eh1_A Ribosome recycling fact 52.9 49 0.0017 26.9 7.5 32 79-110 152-183 (185)
91 1ise_A Ribosome recycling fact 52.0 57 0.0019 26.5 7.7 33 79-111 151-183 (185)
92 1is1_A Ribosome recycling fact 50.5 48 0.0016 27.0 7.0 33 79-111 151-183 (185)
93 1wqg_A Ribosome recycling fact 50.4 55 0.0019 26.6 7.4 33 79-111 151-183 (185)
94 1faq_A RAF-1; transferase, ser 49.3 8.6 0.00029 24.1 1.9 33 213-249 13-46 (52)
95 2wuj_A Septum site-determining 49.1 18 0.00063 23.5 3.5 29 6-37 25-53 (57)
96 3ghg_C Fibrinogen gamma chain; 47.0 1.7E+02 0.0059 26.7 14.5 37 72-108 97-133 (411)
97 3ghg_A Fibrinogen alpha chain; 46.6 1.5E+02 0.0053 28.0 10.5 27 80-106 131-157 (562)
98 3nmd_A CGMP dependent protein 44.6 74 0.0025 21.9 7.1 41 71-111 24-64 (72)
99 2v71_A Nuclear distribution pr 44.2 1.3E+02 0.0044 24.5 13.0 39 6-44 19-57 (189)
100 1y8f_A UNC-13 homolog A, MUNC1 42.9 7.5 0.00026 26.0 0.9 32 213-247 23-58 (66)
101 4dac_A Computationally designe 41.7 33 0.0011 18.6 3.1 19 91-109 5-23 (28)
102 3lf9_A 4E10_D0_1IS1A_001_C (T1 41.1 60 0.002 24.6 5.7 34 79-112 79-112 (121)
103 1yke_B RNA polymerase II holoe 40.6 1.3E+02 0.0044 23.5 11.0 55 42-96 70-126 (151)
104 3na7_A HP0958; flagellar bioge 39.9 1.7E+02 0.0057 24.5 10.4 111 1-112 2-115 (256)
105 3r84_A Mediator of RNA polymer 39.5 1E+02 0.0034 21.9 6.9 31 20-50 3-33 (86)
106 2hzl_A Trap-T family sorbitol/ 39.4 1.9E+02 0.0065 25.1 12.1 84 12-99 253-341 (365)
107 3onj_A T-snare VTI1; helix, HA 38.3 1.1E+02 0.0037 21.9 12.1 80 29-112 5-91 (97)
108 2ysl_A Tripartite motif-contai 36.8 33 0.0011 22.4 3.4 30 212-246 18-48 (73)
109 2kiz_A E3 ubiquitin-protein li 36.4 26 0.0009 22.7 2.8 31 213-246 13-45 (69)
110 3onj_A T-snare VTI1; helix, HA 36.3 83 0.0029 22.5 5.8 26 5-30 2-27 (97)
111 1ykh_B RNA polymerase II holoe 36.2 1.4E+02 0.0048 22.7 11.0 55 43-97 71-127 (132)
112 1vcs_A Vesicle transport throu 36.0 60 0.0021 23.5 5.0 69 6-74 7-83 (102)
113 2ect_A Ring finger protein 126 35.9 43 0.0015 22.2 4.0 31 213-246 14-46 (78)
114 3pmr_A Amyloid-like protein 1; 35.5 1.5E+02 0.005 24.8 7.8 95 5-103 111-212 (219)
115 3oja_A Leucine-rich immune mol 35.4 2.5E+02 0.0086 25.4 11.2 17 70-86 468-484 (487)
116 2jwo_A RAG-2, V(D)J recombinat 35.3 12 0.0004 26.2 0.9 30 227-258 38-74 (82)
117 1v5n_A PDI-like hypothetical p 35.3 13 0.00043 26.6 1.1 33 214-249 47-80 (89)
118 3uej_A NPKC-delta, protein kin 34.8 15 0.00053 24.2 1.4 33 213-248 19-55 (65)
119 2dq0_A Seryl-tRNA synthetase; 34.8 2E+02 0.0069 26.5 9.5 22 92-113 81-102 (455)
120 1fxk_C Protein (prefoldin); ar 34.5 1.4E+02 0.0046 22.3 7.1 104 6-113 3-128 (133)
121 2lh0_A Histone chaperone RTT10 34.1 19 0.00065 24.7 1.7 30 13-42 9-38 (70)
122 2dfs_A Myosin-5A; myosin-V, in 33.9 4.1E+02 0.014 27.3 13.0 19 73-91 1024-1042(1080)
123 2zzv_A ABC transporter, solute 33.8 2.3E+02 0.008 24.5 10.7 42 12-53 260-302 (361)
124 2db6_A SH3 and cysteine rich d 33.8 9.2 0.00032 26.2 0.1 33 213-248 27-63 (74)
125 3qne_A Seryl-tRNA synthetase, 32.2 2.6E+02 0.009 26.0 9.9 23 91-113 82-104 (485)
126 2dmj_A Poly (ADP-ribose) polym 32.1 8.7 0.0003 28.5 -0.3 9 238-246 57-65 (106)
127 2yo3_A General control protein 31.9 1.9E+02 0.0065 24.9 8.1 47 65-111 201-247 (268)
128 1tt9_A Formimidoyltransferase- 30.5 3.6E+02 0.012 25.6 11.4 77 18-94 389-467 (541)
129 1uw0_A DNA ligase III; DNA rep 30.3 7.9 0.00027 29.2 -0.8 9 238-246 49-57 (117)
130 3mq9_A Bone marrow stromal ant 30.2 2.7E+02 0.0092 25.0 9.6 28 84-111 426-460 (471)
131 3u65_B TP33 protein; tetratric 30.1 2.2E+02 0.0075 24.6 8.6 62 11-72 235-301 (328)
132 2vpn_A Periplasmic substrate b 30.1 2.5E+02 0.0085 23.8 9.0 39 11-49 218-257 (316)
133 3agt_A Hemerythrin-like domain 29.9 1.7E+02 0.0058 21.7 8.0 45 63-107 85-130 (136)
134 3he4_A Synzip6; heterodimeric 29.3 59 0.002 20.3 3.3 18 92-109 36-53 (56)
135 3fs3_A Nucleosome assembly pro 29.2 72 0.0025 28.7 5.2 33 9-41 40-72 (359)
136 2csy_A Zinc finger protein 183 28.9 34 0.0012 23.0 2.5 30 212-246 13-43 (81)
137 2ecj_A Tripartite motif-contai 28.7 30 0.001 21.4 2.0 29 212-246 13-43 (58)
138 1v9x_A Poly (ADP-ribose) polym 28.5 9.7 0.00033 28.7 -0.5 11 238-248 52-62 (114)
139 1m1j_B Fibrinogen beta chain; 28.5 3.6E+02 0.012 25.0 15.0 27 82-108 170-196 (464)
140 2ep4_A Ring finger protein 24; 28.5 45 0.0015 21.8 3.0 30 214-246 15-46 (74)
141 2dfs_A Myosin-5A; myosin-V, in 28.2 5.1E+02 0.017 26.6 13.4 21 80-100 1023-1043(1080)
142 2cs2_A Poly [ADP-ribose] polym 27.0 10 0.00034 29.4 -0.7 9 238-246 61-69 (134)
143 2ysj_A Tripartite motif-contai 26.8 58 0.002 20.5 3.2 30 212-246 18-48 (63)
144 2d8t_A Dactylidin, ring finger 26.4 39 0.0013 22.1 2.3 29 213-246 14-43 (71)
145 3k1l_B Fancl; UBC, ring, RWD, 26.4 25 0.00087 31.8 1.7 33 213-246 307-344 (381)
146 1zxa_A CGMP-dependent protein 26.4 52 0.0018 22.3 2.9 19 25-43 32-50 (67)
147 3od8_A Poly [ADP-ribose] polym 26.0 11 0.00039 28.4 -0.5 10 238-247 70-79 (116)
148 2vrw_B P95VAV, VAV1, proto-onc 25.9 34 0.0012 30.6 2.6 34 211-247 354-391 (406)
149 1x4j_A Ring finger protein 38; 25.8 35 0.0012 22.6 2.0 31 213-246 22-54 (75)
150 4g2k_A General control protein 25.7 1.9E+02 0.0066 21.8 6.2 43 6-48 23-65 (125)
151 3odc_A Poly [ADP-ribose] polym 25.7 11 0.00037 28.2 -0.7 9 238-246 53-61 (111)
152 2fnf_X Putative RAS effector N 25.6 45 0.0015 22.6 2.6 33 212-247 33-66 (72)
153 1ge9_A Ribosome recycling fact 25.0 2.7E+02 0.0092 22.4 11.2 32 79-110 150-181 (184)
154 2ecv_A Tripartite motif-contai 24.4 65 0.0022 21.3 3.3 30 212-246 17-47 (85)
155 2l5g_A GPS2 protein, G protein 24.2 1.2E+02 0.0041 18.0 4.0 25 62-86 12-36 (38)
156 1nkp_A C-MYC, MYC proto-oncoge 23.7 1.7E+02 0.0057 20.5 5.4 37 5-41 46-82 (88)
157 3ag7_A Putative uncharacterize 23.7 2.1E+02 0.0071 20.6 7.0 26 25-50 6-31 (106)
158 3vkg_A Dynein heavy chain, cyt 23.4 9.4E+02 0.032 28.2 13.8 36 6-41 1929-1964(3245)
159 1erd_A Pheromone ER-2; NMR {Eu 23.4 4 0.00014 24.0 -2.7 13 240-252 24-36 (40)
160 2ynq_A ESSB; membrane protein, 23.1 2.5E+02 0.0086 22.2 6.8 33 48-80 115-147 (161)
161 1zfo_A LAsp-1; LIM domain, zin 22.9 29 0.001 19.4 1.0 25 216-245 5-31 (31)
162 3lbx_A Spectrin alpha chain, e 22.8 1.7E+02 0.0058 22.4 5.9 23 61-83 133-155 (161)
163 3mtu_A Tropomyosin alpha-1 cha 22.6 76 0.0026 21.8 3.3 34 5-38 17-50 (75)
164 3fxb_A Trap dicarboxylate tran 22.6 3.6E+02 0.012 23.0 9.9 17 11-27 232-248 (326)
165 3fx7_A Putative uncharacterize 22.1 2.2E+02 0.0077 20.4 10.0 27 17-43 8-34 (94)
166 2ct0_A Non-SMC element 1 homol 21.9 34 0.0012 23.4 1.3 29 214-246 15-44 (74)
167 2ld6_A Chemotaxis protein CHEA 21.9 2.4E+02 0.0081 21.1 6.4 21 1-21 1-21 (139)
168 3ghg_B Fibrinogen beta chain; 21.9 4.8E+02 0.016 24.2 10.0 45 68-113 143-189 (461)
169 2bzb_A Conserved domain protei 21.3 1.8E+02 0.006 19.2 4.7 44 7-50 4-47 (62)
170 2v71_A Nuclear distribution pr 21.1 3.3E+02 0.011 22.0 15.6 43 6-48 33-79 (189)
171 1ez3_A Syntaxin-1A; three heli 20.2 2.5E+02 0.0086 20.3 15.5 33 4-36 5-37 (127)
172 2ecn_A Ring finger protein 141 20.0 49 0.0017 21.4 1.8 29 212-246 13-42 (70)
173 1wle_A Seryl-tRNA synthetase; 20.0 5.3E+02 0.018 24.0 11.7 22 92-113 128-149 (501)
174 1lwu_C Fibrinogen gamma chain; 20.0 3.4E+02 0.012 23.9 7.8 32 78-109 24-55 (323)
No 1
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=99.97 E-value=7e-31 Score=202.16 Aligned_cols=103 Identities=56% Similarity=0.911 Sum_probs=100.1
Q ss_pred hhhhHHHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHhhHHH
Q psy7929 2 STSYLEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGDDK 81 (259)
Q Consensus 2 ~~~yLedfld~ie~LP~El~r~l~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~dEK 81 (259)
+++|||+|+++|+|||.||+|+|++||+||.+++++++++++.+++|+++.++++++++...+.+|++.|.++++++|||
T Consensus 2 ~~~yledyld~ie~LP~El~r~~~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~l~~I~~~~~~~~~l~dEK 81 (104)
T 4afl_A 2 AGMYLEHYLDSIENLPFELQRNFQLMRDLDQRTEDLKAEIDKLATEYMSSARSLSSEEKLALLKQIQEAYGKCKEFGDDK 81 (104)
T ss_dssp CCHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 82 VQLAIQTYEMVDKYIRKLDTDLA 104 (259)
Q Consensus 82 v~LA~~a~dlVd~hirrLD~dl~ 104 (259)
|+||++||++||+|++|||.||+
T Consensus 82 v~lA~~~~dlvdkhirrLD~dla 104 (104)
T 4afl_A 82 VQLAMQTYEMVDKHIRRLDTDLA 104 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhhhcC
Confidence 99999999999999999999874
No 2
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.85 E-value=7.5e-22 Score=147.34 Aligned_cols=61 Identities=82% Similarity=1.708 Sum_probs=56.1
Q ss_pred CCCCCCCCCCCCCCCCccceeCCCCCCCceeecCCCCCCcceeeccCcCCcCCCcccccCC
Q psy7929 199 APSHDVLDMPVDPNEPTYCVCQQVSYGEMIGCDNPDCPIEWFHFACVSLTTKPKGKWYCPK 259 (259)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~C~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~~~~~~~~~w~C~~ 259 (259)
..|....+++.|+++..||+|+++.+|+||+||+|+|+++|||+.||||+..|.++||||.
T Consensus 21 ~~p~~~~~~~~d~~e~~yCiC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~ 81 (91)
T 1weu_A 21 VHPSDVLDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPR 81 (91)
T ss_dssp CCCCCCCSCCCCSCCCBCSTTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTT
T ss_pred cCccccccCCcCCCCCcEEECCCCCCCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcC
Confidence 4555667888999999999999999999999999999999999999999999999999984
No 3
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=99.85 E-value=8.6e-22 Score=140.92 Aligned_cols=57 Identities=82% Similarity=1.733 Sum_probs=53.0
Q ss_pred CCCCCCCCCCCCccceeCCCCCCCceeecCCCCCCcceeeccCcCCcCCCcccccCC
Q psy7929 203 DVLDMPVDPNEPTYCVCQQVSYGEMIGCDNPDCPIEWFHFACVSLTTKPKGKWYCPK 259 (259)
Q Consensus 203 ~~~~~~~~~~~~~~C~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~~~~~~~~~w~C~~ 259 (259)
++.+.++|+++..||+|+++++|+||+||+++|+++|||+.||||+..|.++||||.
T Consensus 5 ~~~~~~~d~~~~~~C~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~ 61 (71)
T 1wen_A 5 SSGDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPR 61 (71)
T ss_dssp CSSCCCCCTTSCCCSTTCCCSCSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTT
T ss_pred cccccccCCCCCCEEECCCCCCCCEeEeeCCCCCCccEecccCCcCcCCCCCEECCC
Confidence 455778899999999999999999999999999999999999999999999999984
No 4
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=99.84 E-value=2.2e-22 Score=140.31 Aligned_cols=53 Identities=81% Similarity=1.764 Sum_probs=44.9
Q ss_pred CCCCCCCCCccceeCCCCCCCceeecCCCCCCcceeeccCcCCcCCCcccccC
Q psy7929 206 DMPVDPNEPTYCVCQQVSYGEMIGCDNPDCPIEWFHFACVSLTTKPKGKWYCP 258 (259)
Q Consensus 206 ~~~~~~~~~~~C~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~~~~~~~~~w~C~ 258 (259)
++++|++++.||+|+++++|+||+||+++|+++|||+.||||+..|.++||||
T Consensus 3 ~~~~d~~e~~yC~C~~~~~g~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp 55 (62)
T 2g6q_A 3 EFAIDPNEPTYCLCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCP 55 (62)
T ss_dssp -------CCEETTTTEECCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCH
T ss_pred ccccCCCCCcEEECCCCCCCCeeeeeCCCCCcccEecccCCcCcCCCCCEECc
Confidence 56789999999999999999999999999999999999999999999999997
No 5
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=99.82 E-value=1.3e-21 Score=135.15 Aligned_cols=51 Identities=84% Similarity=1.762 Sum_probs=44.7
Q ss_pred CCCCCCCccceeCCCCCCCceeecCCCCCCcceeeccCcCCcCCCcccccC
Q psy7929 208 PVDPNEPTYCVCQQVSYGEMIGCDNPDCPIEWFHFACVSLTTKPKGKWYCP 258 (259)
Q Consensus 208 ~~~~~~~~~C~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~~~~~~~~~w~C~ 258 (259)
++|++++.||+|+++++|+||+||+++|+++|||+.||||+..|.++||||
T Consensus 3 ~~d~~e~~yC~C~~~~~g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp 53 (59)
T 3c6w_A 3 CRGSNEPTYCLCHQVSYGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCP 53 (59)
T ss_dssp -----CCEETTTTEECCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCH
T ss_pred ccCCCCCcEEECCCCCCCCeeEeeCCCCCCCCEecccCCcccCCCCCEECc
Confidence 568999999999999999999999999999999999999999999999997
No 6
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=99.81 E-value=5.1e-21 Score=142.54 Aligned_cols=52 Identities=58% Similarity=1.423 Sum_probs=46.2
Q ss_pred CCCCCCCccceeCCCCCCCceeecCCCCCCcceeeccCcCCcCCCcccccCC
Q psy7929 208 PVDPNEPTYCVCQQVSYGEMIGCDNPDCPIEWFHFACVSLTTKPKGKWYCPK 259 (259)
Q Consensus 208 ~~~~~~~~~C~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~~~~~~~~~w~C~~ 259 (259)
+.++++++||+|+++++|+||+||+|+|+++|||+.||||+..|.++||||.
T Consensus 20 ~~~~~~~~yCiC~~~~~g~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~ 71 (90)
T 2jmi_A 20 GNNNQEEVYCFCRNVSYGPMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSK 71 (90)
T ss_dssp ----CCSCCSTTTCCCSSSEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSH
T ss_pred CCCCCCCcEEEeCCCCCCCEEEecCCCCccccCcCccCCCCcCCCCCccCCh
Confidence 4577889999999999999999999999999999999999999999999983
No 7
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=99.81 E-value=2.5e-21 Score=134.15 Aligned_cols=53 Identities=89% Similarity=1.878 Sum_probs=44.8
Q ss_pred CCCCCCCCCccceeCCCCCCCceeecCCCCCCcceeeccCcCCcCCCcccccC
Q psy7929 206 DMPVDPNEPTYCVCQQVSYGEMIGCDNPDCPIEWFHFACVSLTTKPKGKWYCP 258 (259)
Q Consensus 206 ~~~~~~~~~~~C~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~~~~~~~~~w~C~ 258 (259)
+++.|++++.||+|+++++|+||+||+++|+++|||+.||||+..|.|+||||
T Consensus 2 ~~~~d~~e~~~C~C~~~~~g~mi~CD~cdC~~~wfH~~Cvgl~~~p~g~w~C~ 54 (60)
T 2vnf_A 2 DMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCP 54 (60)
T ss_dssp -------CCEETTTTEECCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCH
T ss_pred CcccCCCCCCEEECCCcCCCCEEEeCCCCCCCceEehhcCCCCcCCCCCEECc
Confidence 56789999999999999999999999999999999999999999999999997
No 8
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=8e-21 Score=135.51 Aligned_cols=49 Identities=69% Similarity=1.648 Sum_probs=46.9
Q ss_pred CCCCCccceeCCCCCCCceeecCCCCCCcceeeccCcCCcCCCcccccC
Q psy7929 210 DPNEPTYCVCQQVSYGEMIGCDNPDCPIEWFHFACVSLTTKPKGKWYCP 258 (259)
Q Consensus 210 ~~~~~~~C~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~~~~~~~~~w~C~ 258 (259)
++++++||+|+++++|+||+||+|+|+++|||+.||||+..|.++||||
T Consensus 2 ~~~~~~yC~C~~~~~g~MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp 50 (70)
T 1x4i_A 2 SSGSSGYCICNQVSYGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCP 50 (70)
T ss_dssp CCSCCCCSTTSCCCCSSEECCSCTTCSCCCEEHHHHTCSSCCSSCCCCH
T ss_pred CCCCCeEEEcCCCCCCCEeEeCCCCCCccCCcccccccCcCCCCCEECC
Confidence 5788999999999999999999999999999999999999999999997
No 9
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.64 E-value=9e-17 Score=116.95 Aligned_cols=53 Identities=36% Similarity=0.893 Sum_probs=46.2
Q ss_pred CCCCCCCCCCccceeCCC-CCCCceeecCCCCCCcceeeccCcCCcCCC-------cccccC
Q psy7929 205 LDMPVDPNEPTYCVCQQV-SYGEMIGCDNPDCPIEWFHFACVSLTTKPK-------GKWYCP 258 (259)
Q Consensus 205 ~~~~~~~~~~~~C~C~~~-~~g~mi~Cd~~~c~~~wfH~~Cv~~~~~~~-------~~w~C~ 258 (259)
.+.+.++++.+||+|+++ .+|.||+|||..|.. |||+.||||+..+. ++||||
T Consensus 7 ~dd~~~~~~~~~CiC~~~~~~g~MI~CD~~~C~~-W~H~~CVgi~~~~~~~~~~~~~~~~C~ 67 (78)
T 1wew_A 7 GEDPFQPEIKVRCVCGNSLETDSMIQCEDPRCHV-WQHVGCVILPDKPMDGNPPLPESFYCE 67 (78)
T ss_dssp CCCSSSCCCCCCCSSCCCCCCSCEEECSSTTTCC-EEEHHHHSCCCTTTCSCSCSCSSCCCH
T ss_pred cccccCCCCCEEeECCCcCCCCCEEEECCccCCc-cccCEEEccccccccccccCCCCEECC
Confidence 466788899999999999 689999999777885 99999999998763 589997
No 10
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=99.52 E-value=4.5e-15 Score=105.11 Aligned_cols=51 Identities=29% Similarity=0.819 Sum_probs=42.6
Q ss_pred CCCCCCCCccceeCCC-CCCCceeecCCCCCCcceeeccCcCCcCCC------cccccC
Q psy7929 207 MPVDPNEPTYCVCQQV-SYGEMIGCDNPDCPIEWFHFACVSLTTKPK------GKWYCP 258 (259)
Q Consensus 207 ~~~~~~~~~~C~C~~~-~~g~mi~Cd~~~c~~~wfH~~Cv~~~~~~~------~~w~C~ 258 (259)
.+.+|++.+||+|+.+ .+|.||+||+..|. .|||+.||||+..|. .+||||
T Consensus 3 d~~~~e~~v~C~C~~~~~~g~mI~CD~~~C~-~W~H~~Cvgi~~~~~~~~~~p~~~~C~ 60 (68)
T 2rsd_A 3 DSFQPEAKVRCICSSTMVNDSMIQCEDQRCQ-VWQHLNCVLIPDKPGESAEVPPVFYCE 60 (68)
T ss_dssp SCCCSSCEECCTTCCCSCCSCEEECSCTTTC-EEEETTTSCCCSSTTSCCCCCSSCCCH
T ss_pred CCcCCCCCEEeECCCCcCCCCEEEECCCCCC-CeEchhhCCCCcccccccCCCCcEECc
Confidence 3567888999999886 47999999986676 899999999987763 379997
No 11
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=99.43 E-value=4.8e-14 Score=99.77 Aligned_cols=47 Identities=21% Similarity=0.580 Sum_probs=40.2
Q ss_pred CCCCCCccceeCCCCCC-CceeecCCCCCCcceeeccCcCCcCC-CcccccC
Q psy7929 209 VDPNEPTYCVCQQVSYG-EMIGCDNPDCPIEWFHFACVSLTTKP-KGKWYCP 258 (259)
Q Consensus 209 ~~~~~~~~C~C~~~~~g-~mi~Cd~~~c~~~wfH~~Cv~~~~~~-~~~w~C~ 258 (259)
.++++.+||+|+++.+| .||+||+|. +|||+.|||++..+ .+.||||
T Consensus 14 ~~~~~~~~CiC~~~~~~~~MIqCd~C~---~WfH~~Cvgi~~~~~~~~~~C~ 62 (68)
T 3o70_A 14 LYFQGLVTCFCMKPFAGRPMIECNECH---TWIHLSCAKIRKSNVPEVFVCQ 62 (68)
T ss_dssp CTTTTCCCSTTCCCCTTCCEEECTTTC---CEEETTTTTCCTTSCCSSCCCH
T ss_pred CCCCCceEeECCCcCCCCCEEECCCCC---ccccccccCcCcccCCCcEECC
Confidence 45678999999999876 599999965 99999999998854 5799997
No 12
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=99.41 E-value=5.4e-14 Score=94.33 Aligned_cols=43 Identities=23% Similarity=0.692 Sum_probs=37.5
Q ss_pred CCccceeCCCCCC-CceeecCCCCCCcceeeccCcCCcCC-CcccccC
Q psy7929 213 EPTYCVCQQVSYG-EMIGCDNPDCPIEWFHFACVSLTTKP-KGKWYCP 258 (259)
Q Consensus 213 ~~~~C~C~~~~~g-~mi~Cd~~~c~~~wfH~~Cv~~~~~~-~~~w~C~ 258 (259)
+.+||+|+++.+| .||+||+|. +|||+.|||++..+ .+.|+||
T Consensus 3 d~~~C~C~~~~~~~~MI~Cd~C~---~W~H~~Cvgi~~~~~~~~~~C~ 47 (52)
T 3o7a_A 3 DLVTCFCMKPFAGRPMIECNECH---TWIHLSCAKIRKSNVPEVFVCQ 47 (52)
T ss_dssp TCBCSTTCCBCTTCCEEECTTTC---CEEETTTTTCCGGGCCSSCCCH
T ss_pred cCeEEEeCCcCCCCCEEEcCCCC---ccccccccCCCcccCCCcEECc
Confidence 4689999999876 899999965 99999999998865 5799997
No 13
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.35 E-value=3.3e-13 Score=94.19 Aligned_cols=45 Identities=29% Similarity=0.622 Sum_probs=38.4
Q ss_pred CCCCccc-eeCCCC--CCCceeecCCCCCCcceeeccCcCCcCC---CcccccC
Q psy7929 211 PNEPTYC-VCQQVS--YGEMIGCDNPDCPIEWFHFACVSLTTKP---KGKWYCP 258 (259)
Q Consensus 211 ~~~~~~C-~C~~~~--~g~mi~Cd~~~c~~~wfH~~Cv~~~~~~---~~~w~C~ 258 (259)
.++..|| +|+++. .+.||+||.|. +|||+.||||+..+ .+.|+|+
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~ 53 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCE---MWFHGKCVKITPARAEHIKQYKCP 53 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSC---CEEETTTTTCCTTGGGGCSSCCCH
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCC---CCCCccccCcChhHhcCCCcEECC
Confidence 4678999 999997 47899999854 99999999998875 3689997
No 14
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.34 E-value=2.1e-13 Score=98.52 Aligned_cols=46 Identities=41% Similarity=0.947 Sum_probs=38.2
Q ss_pred CCCCCCccceeCCCCC-CCceeecCCCCCCcceeeccCcCCcCC-------CcccccC
Q psy7929 209 VDPNEPTYCVCQQVSY-GEMIGCDNPDCPIEWFHFACVSLTTKP-------KGKWYCP 258 (259)
Q Consensus 209 ~~~~~~~~C~C~~~~~-g~mi~Cd~~~c~~~wfH~~Cv~~~~~~-------~~~w~C~ 258 (259)
.|++ .+||+|+++.+ +.||+||.|. +|||+.||||+..+ ...||||
T Consensus 12 ~d~~-~~~C~C~~~~~~~~MI~Cd~C~---~WfH~~Cvgl~~~~~~~l~~~~~~~~C~ 65 (76)
T 1wem_A 12 YDPN-ALYCICRQPHNNRFMICCDRCE---EWFHGDCVGISEARGRLLERNGEDYICP 65 (76)
T ss_dssp CCTT-CCCSTTCCCCCSSCEEECSSSC---CEEEHHHHSCCHHHHHHHHHHTCCCCCH
T ss_pred cCCC-CCEEECCCccCCCCEEEeCCCC---CcEeCeEEccchhhhhhccCCCCeEECc
Confidence 3444 69999999987 4799999855 99999999998764 4689997
No 15
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.34 E-value=1.4e-13 Score=100.14 Aligned_cols=46 Identities=33% Similarity=0.759 Sum_probs=39.1
Q ss_pred CCCCccceeCCCC--CCCceeecCCCCCCcceeeccCcCCcCC---CcccccCC
Q psy7929 211 PNEPTYCVCQQVS--YGEMIGCDNPDCPIEWFHFACVSLTTKP---KGKWYCPK 259 (259)
Q Consensus 211 ~~~~~~C~C~~~~--~g~mi~Cd~~~c~~~wfH~~Cv~~~~~~---~~~w~C~~ 259 (259)
.++++||+|+++. ++.||+||+|. +|||+.||||+..+ .+.|+|+.
T Consensus 9 ~~~~~~C~C~~~~d~~~~MIqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~ 59 (79)
T 1wep_A 9 ALVPVYCLCRQPYNVNHFMIECGLCQ---DWFHGSCVGIEEENAVDIDIYHCPD 59 (79)
T ss_dssp CCCCCCSTTSCSCCSSSCEEEBTTTC---CEEEHHHHTCCHHHHTTCSBBCCTT
T ss_pred cCCccEEEcCCccCCCCceEEcCCCC---CcEEeeecCcccccccCCCeEECCC
Confidence 3568999999997 57899999854 99999999998765 37899984
No 16
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=99.33 E-value=1.9e-13 Score=98.49 Aligned_cols=46 Identities=35% Similarity=0.790 Sum_probs=39.4
Q ss_pred CCCCCccceeCCCCC--CCceeecCCCCCCcceeeccCcCCcCCC---cccccC
Q psy7929 210 DPNEPTYCVCQQVSY--GEMIGCDNPDCPIEWFHFACVSLTTKPK---GKWYCP 258 (259)
Q Consensus 210 ~~~~~~~C~C~~~~~--g~mi~Cd~~~c~~~wfH~~Cv~~~~~~~---~~w~C~ 258 (259)
.+++++||+|+++.+ +.||+||+|. +|||+.|||++..+. +.||||
T Consensus 6 ~~~~~~yCiC~~~~~~~~~MI~Cd~C~---~WfH~~Cvg~~~~~~~~~~~~~C~ 56 (75)
T 3kqi_A 6 MATVPVYCVCRLPYDVTRFMIECDACK---DWFHGSCVGVEEEEAPDIDIYHCP 56 (75)
T ss_dssp TCCCCEETTTTEECCTTSCEEECTTTC---CEEEHHHHTCCTTTGGGBSSCCCH
T ss_pred CCCCeeEEECCCcCCCCCCEEEcCCCC---CCEecccccccccccCCCCEEECC
Confidence 567899999999864 5799999855 999999999998763 689997
No 17
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.32 E-value=6.9e-13 Score=94.83 Aligned_cols=47 Identities=26% Similarity=0.564 Sum_probs=38.9
Q ss_pred CCCCCCccceeCCCC-CC-CceeecCCCCCCcceeeccCcCCcC--CCcccccC
Q psy7929 209 VDPNEPTYCVCQQVS-YG-EMIGCDNPDCPIEWFHFACVSLTTK--PKGKWYCP 258 (259)
Q Consensus 209 ~~~~~~~~C~C~~~~-~g-~mi~Cd~~~c~~~wfH~~Cv~~~~~--~~~~w~C~ 258 (259)
.+.++.+||+|+++. +| .||+||.|. .|||+.|||++.. ..++||||
T Consensus 11 ~~~~~~~~C~C~~~~~~g~~mI~Cd~C~---~W~H~~Cvg~~~~~~~~~~~~C~ 61 (72)
T 1wee_A 11 GVDNWKVDCKCGTKDDDGERMLACDGCG---VWHHTRCIGINNADALPSKFLCF 61 (72)
T ss_dssp SSCSSEECCTTCCCSCCSSCEEECSSSC---EEEETTTTTCCTTSCCCSCCCCH
T ss_pred CCCCcceEeeCCCccCCCCcEEECCCCC---CccCCeeeccCccccCCCcEECC
Confidence 345678999999996 56 599999865 9999999999864 35789997
No 18
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=99.31 E-value=4.9e-13 Score=96.26 Aligned_cols=47 Identities=40% Similarity=1.054 Sum_probs=39.7
Q ss_pred CCCCCccc-eeCCCCCC-CceeecCCCCCCcceeeccCcCCcCC--CcccccCC
Q psy7929 210 DPNEPTYC-VCQQVSYG-EMIGCDNPDCPIEWFHFACVSLTTKP--KGKWYCPK 259 (259)
Q Consensus 210 ~~~~~~~C-~C~~~~~g-~mi~Cd~~~c~~~wfH~~Cv~~~~~~--~~~w~C~~ 259 (259)
+.++..|| +|+++.++ .||+||+|+ .|||+.|||++..+ .+.||||.
T Consensus 14 ~~~~~~~C~~C~~~~~~~~mi~CD~C~---~wfH~~Cv~~~~~~~~~~~w~C~~ 64 (75)
T 2k16_A 14 WGNQIWICPGCNKPDDGSPMIGCDDCD---DWYHWPCVGIMAAPPEEMQWFCPK 64 (75)
T ss_dssp SSCEEECBTTTTBCCSSCCEEECSSSS---SEEEHHHHTCSSCCCSSSCCCCTT
T ss_pred cCCCCcCCCCCCCCCCCCCEEEcCCCC---cccccccCCCCccCCCCCCEEChh
Confidence 45667899 99999887 599999955 99999999988765 47999984
No 19
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=99.22 E-value=3.4e-12 Score=97.82 Aligned_cols=47 Identities=43% Similarity=1.025 Sum_probs=39.4
Q ss_pred CCCCCccc-eeCCCCCCCceeecCCCCCCcceeeccCcCCcCCCcccccCC
Q psy7929 210 DPNEPTYC-VCQQVSYGEMIGCDNPDCPIEWFHFACVSLTTKPKGKWYCPK 259 (259)
Q Consensus 210 ~~~~~~~C-~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~~~~~~~~~w~C~~ 259 (259)
.+.+..|| +|+. .|+||+||+..|++ |||+.||+|+..|.|+||||+
T Consensus 11 ~~~~~~~C~~C~~--~G~ll~CD~~~Cp~-~fH~~Cl~L~~~P~g~W~Cp~ 58 (107)
T 4gne_A 11 KQMHEDYCFQCGD--GGELVMCDKKDCPK-AYHLLCLNLTQPPYGKWECPW 58 (107)
T ss_dssp CCSSCSSCTTTCC--CSEEEECCSTTCCC-EECTGGGTCSSCCSSCCCCGG
T ss_pred cCCCCCCCCcCCC--CCcEeEECCCCCCc-ccccccCcCCcCCCCCEECCC
Confidence 34556799 6774 59999999766885 999999999999999999984
No 20
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=99.13 E-value=1.2e-11 Score=94.76 Aligned_cols=41 Identities=29% Similarity=0.878 Sum_probs=34.6
Q ss_pred ccc-eeCCC--CCCCceeec-CCCCCCcceeeccCcCCc--------CCCcccccC
Q psy7929 215 TYC-VCQQV--SYGEMIGCD-NPDCPIEWFHFACVSLTT--------KPKGKWYCP 258 (259)
Q Consensus 215 ~~C-~C~~~--~~g~mi~Cd-~~~c~~~wfH~~Cv~~~~--------~~~~~w~C~ 258 (259)
..| +|+++ ..++||+|| . |. +|||+.||||+. .|.++|+||
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~--C~-~WfH~~CVglt~~~~~~i~~~~~~~~~Cp 56 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEAS--CQ-KWFHRECTGMTESAYGLLTTEASAVWACD 56 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTT--TC-CEEEGGGTTCCHHHHHHHHHCTTEEECCH
T ss_pred CCCCCCCCccCCCCCEEEecCC--cc-cccccccCCcCHHHHHhhccCCCCCEECc
Confidence 457 99999 467899998 5 55 999999999987 466899997
No 21
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=99.09 E-value=1.2e-11 Score=86.61 Aligned_cols=41 Identities=27% Similarity=0.792 Sum_probs=33.4
Q ss_pred cceeCCCCC--CCceeec-CCCCCCcceeeccCcCCcC--------CCcccccCC
Q psy7929 216 YCVCQQVSY--GEMIGCD-NPDCPIEWFHFACVSLTTK--------PKGKWYCPK 259 (259)
Q Consensus 216 ~C~C~~~~~--g~mi~Cd-~~~c~~~wfH~~Cv~~~~~--------~~~~w~C~~ 259 (259)
.++|++|.+ .+||+|| . |. .|||+.||||+.. |.+.|+||.
T Consensus 11 C~~C~~p~~~~~~mI~CD~~--C~-~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~ 62 (65)
T 2vpb_A 11 CGICTNEVNDDQDAILCEAS--CQ-KWFHRICTGMTETAYGLLTAEASAVWGCDT 62 (65)
T ss_dssp CTTTCSBCCTTSCEEEBTTT--TC-CEEEHHHHTCCHHHHHHHHHCTTEEECCHH
T ss_pred CccCCCccCCCCCeEecccC--cc-ccCchhccCCCHHHHHHhhccCCCcEECcC
Confidence 349999964 4699999 6 44 9999999999874 667999973
No 22
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=99.06 E-value=2.4e-11 Score=81.27 Aligned_cols=42 Identities=29% Similarity=0.734 Sum_probs=34.4
Q ss_pred cceeCCCCC--CCceeecCCCCCCcceeeccCcCCcCC--CcccccCC
Q psy7929 216 YCVCQQVSY--GEMIGCDNPDCPIEWFHFACVSLTTKP--KGKWYCPK 259 (259)
Q Consensus 216 ~C~C~~~~~--g~mi~Cd~~~c~~~wfH~~Cv~~~~~~--~~~w~C~~ 259 (259)
.|+|++|.. +.||+||| .|. +|||+.||||+..+ .++|+||.
T Consensus 5 cc~C~~p~~~~~~mI~Cd~-~C~-~WfH~~Cvgl~~~~~~~~~~~C~~ 50 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDG-GCD-EWFHQVCVGVSPEMAENEDYICIN 50 (52)
T ss_dssp CTTCCCCCCTTCCEEECTT-TTC-CEEETTTTTCCHHHHHHSCCCCSC
T ss_pred CCCCcCccCCCCcEEEeCC-CCC-ccCcccccCCCccccCCCCEECCC
Confidence 569999975 45999995 355 99999999998765 47899984
No 23
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=99.05 E-value=1.3e-10 Score=87.85 Aligned_cols=46 Identities=26% Similarity=0.688 Sum_probs=37.3
Q ss_pred CCCCccceeCCCC-CCCceeecCCCCCCcceeeccCcCCcCC-CcccccCC
Q psy7929 211 PNEPTYCVCQQVS-YGEMIGCDNPDCPIEWFHFACVSLTTKP-KGKWYCPK 259 (259)
Q Consensus 211 ~~~~~~C~C~~~~-~g~mi~Cd~~~c~~~wfH~~Cv~~~~~~-~~~w~C~~ 259 (259)
.++.+.|+|+.+. .|.||+||.|. .|||+.|||++..+ .+.||||.
T Consensus 25 ~~d~vrCiC~~~~~~~~mi~Cd~C~---~w~H~~C~~~~~~~~p~~w~C~~ 72 (98)
T 2lv9_A 25 GTDVTRCICGFTHDDGYMICCDKCS---VWQHIDCMGIDRQHIPDTYLCER 72 (98)
T ss_dssp CCCBCCCTTSCCSCSSCEEEBTTTC---BEEETTTTTCCTTSCCSSBCCTT
T ss_pred CCCCEEeECCCccCCCcEEEcCCCC---CcCcCcCCCCCccCCCCCEECCC
Confidence 3457889999886 57899999965 89999999986543 46899984
No 24
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=99.02 E-value=3.2e-11 Score=114.93 Aligned_cols=46 Identities=39% Similarity=0.873 Sum_probs=39.7
Q ss_pred CCCCCccceeCCCC--CCCceeecCCCCCCcceeeccCcCCcCCC---cccccC
Q psy7929 210 DPNEPTYCVCQQVS--YGEMIGCDNPDCPIEWFHFACVSLTTKPK---GKWYCP 258 (259)
Q Consensus 210 ~~~~~~~C~C~~~~--~g~mi~Cd~~~c~~~wfH~~Cv~~~~~~~---~~w~C~ 258 (259)
+.++..||+|+++. ++.||+||+|+ +|||+.|||++..+. ++||||
T Consensus 33 ~~~~~~yC~C~~~~d~~~~MIqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~ 83 (488)
T 3kv5_D 33 PPPPPVYCVCRQPYDVNRFMIECDICK---DWFHGSCVGVEEHHAVDIDLYHCP 83 (488)
T ss_dssp CCCCCEETTTTEECCTTSCEEEBTTTC---CEEEHHHHTCCGGGGGGEEEBCCH
T ss_pred CCCCCeEEeCCCcCCCCCCeEEccCCC---CceeeeecCcCcccccCCCEEECC
Confidence 45678999999986 58899999855 999999999998763 689997
No 25
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=2.4e-10 Score=77.49 Aligned_cols=41 Identities=39% Similarity=1.099 Sum_probs=35.7
Q ss_pred CCccc-eeCCCCCCCceeecCCCCCCcceeeccCc--CCcCCCcccccC
Q psy7929 213 EPTYC-VCQQVSYGEMIGCDNPDCPIEWFHFACVS--LTTKPKGKWYCP 258 (259)
Q Consensus 213 ~~~~C-~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~--~~~~~~~~w~C~ 258 (259)
+..+| +|+.. |+||.||.| + .|||+.|++ ++..|.+.||||
T Consensus 8 ~~~~C~vC~~~--g~ll~Cd~C--~-~~~H~~Cl~ppl~~~p~g~W~C~ 51 (56)
T 2yql_A 8 HEDFCSVCRKS--GQLLMCDTC--S-RVYHLDCLDPPLKTIPKGMWICP 51 (56)
T ss_dssp SCCSCSSSCCS--SCCEECSSS--S-CEECSSSSSSCCCSCCCSSCCCH
T ss_pred CCCCCccCCCC--CeEEEcCCC--C-cceECccCCCCcCCCCCCceECh
Confidence 45678 89987 899999985 4 899999999 888899999997
No 26
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=98.98 E-value=2.1e-10 Score=80.40 Aligned_cols=41 Identities=49% Similarity=1.168 Sum_probs=35.4
Q ss_pred CCccc-eeCCCCCCCceeecCCCCCCcceeeccCc--CCcCCCcccccC
Q psy7929 213 EPTYC-VCQQVSYGEMIGCDNPDCPIEWFHFACVS--LTTKPKGKWYCP 258 (259)
Q Consensus 213 ~~~~C-~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~--~~~~~~~~w~C~ 258 (259)
...+| +|+.. |+||.||. |+ .|||+.|++ |+..|.+.|||+
T Consensus 7 ~~~~C~vC~~~--g~ll~CD~--C~-~~fH~~Cl~ppl~~~P~g~W~C~ 50 (66)
T 1xwh_A 7 NEDECAVCRDG--GELICCDG--CP-RAFHLACLSPPLREIPSGTWRCS 50 (66)
T ss_dssp CCCSBSSSSCC--SSCEECSS--CC-CEECTTTSSSCCSSCCSSCCCCH
T ss_pred CCCCCccCCCC--CCEEEcCC--CC-hhhcccccCCCcCcCCCCCeECc
Confidence 45678 89986 89999998 54 699999999 888899999997
No 27
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=98.98 E-value=1.9e-10 Score=79.48 Aligned_cols=43 Identities=49% Similarity=1.224 Sum_probs=36.0
Q ss_pred CCCccc-eeCCCCCCCceeecCCCCCCcceeeccCcC--CcCCCcccccCC
Q psy7929 212 NEPTYC-VCQQVSYGEMIGCDNPDCPIEWFHFACVSL--TTKPKGKWYCPK 259 (259)
Q Consensus 212 ~~~~~C-~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~~--~~~~~~~w~C~~ 259 (259)
+...|| +|++. |+||.||. |+ .|||+.|+++ +..|.+.||||.
T Consensus 9 ~~~~~C~vC~~~--g~ll~CD~--C~-~~fH~~Cl~p~l~~~p~g~W~C~~ 54 (61)
T 2l5u_A 9 DHQDYCEVCQQG--GEIILCDT--CP-RAYHMVCLDPDMEKAPEGKWSCPH 54 (61)
T ss_dssp CCCSSCTTTSCC--SSEEECSS--SS-CEEEHHHHCTTCCSCCCSSCCCTT
T ss_pred CCCCCCccCCCC--CcEEECCC--CC-hhhhhhccCCCCCCCCCCceECcc
Confidence 446788 89986 89999998 55 6999999996 677899999984
No 28
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.96 E-value=2e-10 Score=76.34 Aligned_cols=41 Identities=37% Similarity=0.938 Sum_probs=34.5
Q ss_pred cc-eeCCCC-CCCceeecCCCCCCcceeeccC--cCCcCCCcccccCC
Q psy7929 216 YC-VCQQVS-YGEMIGCDNPDCPIEWFHFACV--SLTTKPKGKWYCPK 259 (259)
Q Consensus 216 ~C-~C~~~~-~g~mi~Cd~~~c~~~wfH~~Cv--~~~~~~~~~w~C~~ 259 (259)
+| +|++.. .++||.||+|+ .|||+.|+ +++..|.|.|||+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~---~~~H~~Cl~p~l~~~P~g~W~C~~ 46 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECN---KAFHLFCLRPALYEVPDGEWQCPA 46 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTC---CEECHHHHCTTCCSCCSSCCSCTT
T ss_pred CCCCCCCCCCCCCEEECCCCC---hhhCcccCCCCcCCCCCCcEECcC
Confidence 46 888875 46799999855 79999999 58888999999984
No 29
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=98.95 E-value=3.9e-10 Score=77.84 Aligned_cols=42 Identities=36% Similarity=1.044 Sum_probs=35.5
Q ss_pred CCccc-eeCCCCCCCceeecCCCCCCcceeeccCc--CCcCCCcccccCC
Q psy7929 213 EPTYC-VCQQVSYGEMIGCDNPDCPIEWFHFACVS--LTTKPKGKWYCPK 259 (259)
Q Consensus 213 ~~~~C-~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~--~~~~~~~~w~C~~ 259 (259)
...+| +|+.. |+||.||+|. .+||+.|++ ++..|.+.|||+.
T Consensus 8 ~~~~C~vC~~~--g~ll~Cd~C~---~~fH~~Cl~ppl~~~p~g~W~C~~ 52 (61)
T 1mm2_A 8 HMEFCRVCKDG--GELLCCDTCP---SSYHIHCLNPPLPEIPNGEWLCPR 52 (61)
T ss_dssp SCSSCTTTCCC--SSCBCCSSSC---CCBCSSSSSSCCSSCCSSCCCCTT
T ss_pred CCCcCCCCCCC--CCEEEcCCCC---HHHcccccCCCcCcCCCCccCChh
Confidence 35677 89875 8999999854 679999999 8888999999984
No 30
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.92 E-value=3.6e-10 Score=80.34 Aligned_cols=44 Identities=25% Similarity=0.643 Sum_probs=36.5
Q ss_pred CCCccc-eeCCCC---CCCceeecCCCCCCcceeeccCcCCcCCCcccccC
Q psy7929 212 NEPTYC-VCQQVS---YGEMIGCDNPDCPIEWFHFACVSLTTKPKGKWYCP 258 (259)
Q Consensus 212 ~~~~~C-~C~~~~---~g~mi~Cd~~~c~~~wfH~~Cv~~~~~~~~~w~C~ 258 (259)
.+..+| +|+... .++||.||+|+ .|||..|++++..|.|.|||+
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~---~~~H~~Cl~~~~vP~g~W~C~ 61 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCN---LAVHQECYGVPYIPEGQWLCR 61 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSC---CEEEHHHHTCSSCCSSCCCCH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCC---CccccccCCCCcCCCCCcCCc
Confidence 345566 998873 46899999855 699999999999999999997
No 31
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.88 E-value=8.1e-10 Score=75.94 Aligned_cols=40 Identities=40% Similarity=1.123 Sum_probs=34.8
Q ss_pred Cccc-eeCCCCCCCceeecCCCCCCcceeeccCc--CCcCCCcccccC
Q psy7929 214 PTYC-VCQQVSYGEMIGCDNPDCPIEWFHFACVS--LTTKPKGKWYCP 258 (259)
Q Consensus 214 ~~~C-~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~--~~~~~~~~w~C~ 258 (259)
..+| +|++. |+||.||.| + .|||+.|++ ++..|.+.||||
T Consensus 5 ~~~C~vC~~~--g~ll~Cd~C--~-~~fH~~Cl~ppl~~~p~g~W~C~ 47 (60)
T 2puy_A 5 EDFCSVCRKS--GQLLMCDTC--S-RVYHLDCLDPPLKTIPKGMWICP 47 (60)
T ss_dssp CSSCTTTCCC--SSCEECSSS--S-CEECGGGSSSCCSSCCCSCCCCH
T ss_pred CCCCcCCCCC--CcEEEcCCC--C-cCEECCcCCCCcCCCCCCceECh
Confidence 3467 99986 899999985 4 899999999 888899999997
No 32
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.85 E-value=1e-09 Score=81.28 Aligned_cols=42 Identities=24% Similarity=0.627 Sum_probs=35.0
Q ss_pred Cccc-eeCCCC---CCCceeecCCCCCCcceeeccCcCCcCCCcccccC
Q psy7929 214 PTYC-VCQQVS---YGEMIGCDNPDCPIEWFHFACVSLTTKPKGKWYCP 258 (259)
Q Consensus 214 ~~~C-~C~~~~---~g~mi~Cd~~~c~~~wfH~~Cv~~~~~~~~~w~C~ 258 (259)
..+| +|+... .++||.||.|. .|||+.|++++..|.|.|||+
T Consensus 25 ~~~C~vC~~~~s~~~~~ll~CD~C~---~~fH~~Cl~p~~vP~g~W~C~ 70 (88)
T 2l43_A 25 DAVCSICMDGESQNSNVILFCDMCN---LAVHQECYGVPYIPEGQWLCR 70 (88)
T ss_dssp CCCCSSCCSSSSCSEEEEEECSSSC---CCCCHHHHTCSSCCSSCCCCH
T ss_pred CCcCCcCCCCCCCCCCCEEECCCCC---chhhcccCCCCccCCCceECc
Confidence 3455 999873 34799999854 699999999998999999997
No 33
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=1.5e-09 Score=81.00 Aligned_cols=43 Identities=33% Similarity=0.862 Sum_probs=36.2
Q ss_pred CCccc-eeCCCC-CCCceeecCCCCCCcceeeccCc--CCcCCCcccccC
Q psy7929 213 EPTYC-VCQQVS-YGEMIGCDNPDCPIEWFHFACVS--LTTKPKGKWYCP 258 (259)
Q Consensus 213 ~~~~C-~C~~~~-~g~mi~Cd~~~c~~~wfH~~Cv~--~~~~~~~~w~C~ 258 (259)
+..+| +|++.. .+.||.||.|. .|||..|++ |+..|.+.||||
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~---~~~H~~Cl~Ppl~~~P~g~W~C~ 61 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCD---DNYHIFCLLPPLPEIPRGIWRCP 61 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTC---CEECSSSSSSCCSSCCSSCCCCH
T ss_pred CCCCCccCCCcCCCCCEEEcCCCC---chhccccCCCCcccCCCCCcCCc
Confidence 35567 999885 35799999855 799999999 888999999997
No 34
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=98.74 E-value=5.3e-09 Score=73.26 Aligned_cols=40 Identities=25% Similarity=0.584 Sum_probs=34.1
Q ss_pred ccc-eeCCCCCCCceeecCCCCCCcceeeccCc--CCcCCCcccccCC
Q psy7929 215 TYC-VCQQVSYGEMIGCDNPDCPIEWFHFACVS--LTTKPKGKWYCPK 259 (259)
Q Consensus 215 ~~C-~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~--~~~~~~~~w~C~~ 259 (259)
..| +|++. |+||.||.|. .|||..|+. |+..|.+.|||+.
T Consensus 13 ~~C~vC~~~--~~ll~Cd~C~---~~~H~~Cl~P~l~~~P~g~W~C~~ 55 (66)
T 2lri_C 13 ARCGVCGDG--TDVLRCTHCA---AAFHWRCHFPAGTSRPGTGLRCRS 55 (66)
T ss_dssp CCCTTTSCC--TTCEECSSSC---CEECHHHHCTTTCCCCSSSCCCTT
T ss_pred CCcCCCCCC--CeEEECCCCC---CceecccCCCccCcCCCCCEECcc
Confidence 347 99876 8899999955 789999995 7888999999984
No 35
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.65 E-value=1.5e-08 Score=70.72 Aligned_cols=46 Identities=26% Similarity=0.636 Sum_probs=35.7
Q ss_pred CCCCCccc-eeCCCC---CCCceeecCCCCCCcceeeccCcCC--c---CCCcccccC
Q psy7929 210 DPNEPTYC-VCQQVS---YGEMIGCDNPDCPIEWFHFACVSLT--T---KPKGKWYCP 258 (259)
Q Consensus 210 ~~~~~~~C-~C~~~~---~g~mi~Cd~~~c~~~wfH~~Cv~~~--~---~~~~~w~C~ 258 (259)
++.+..+| +|+... .+.||.||.|+ .|||..|++.. . .|.+.|||+
T Consensus 2 ~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~---~~~H~~C~~p~l~~~~~~p~~~W~C~ 56 (66)
T 2yt5_A 2 SSGSSGVCTICQEEYSEAPNEMVICDKCG---QGYHQLCHTPHIDSSVIDSDEKWLCR 56 (66)
T ss_dssp CCCCCCCBSSSCCCCCBTTBCEEECSSSC---CEEETTTSSSCCCHHHHHSSCCCCCH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCC---hHHHhhhCCCcccccccCCCCCEECC
Confidence 34556677 998873 37899999965 78999999953 3 278999996
No 36
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.64 E-value=2.3e-08 Score=73.66 Aligned_cols=42 Identities=36% Similarity=0.951 Sum_probs=35.6
Q ss_pred CCccc-eeCCCCCCCceeecCCCCCCcceeeccC--cCCcCCCcccccCC
Q psy7929 213 EPTYC-VCQQVSYGEMIGCDNPDCPIEWFHFACV--SLTTKPKGKWYCPK 259 (259)
Q Consensus 213 ~~~~C-~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv--~~~~~~~~~w~C~~ 259 (259)
...+| +|+.. |+||.||. |+ ..||+.|+ +++..|.|.||||.
T Consensus 24 n~~~C~vC~~~--g~LL~CD~--C~-~~fH~~Cl~PpL~~~P~g~W~C~~ 68 (88)
T 1fp0_A 24 SATICRVCQKP--GDLVMCNQ--CE-FCFHLDCHLPALQDVPGEEWSCSL 68 (88)
T ss_dssp SSSCCSSSCSS--SCCEECTT--SS-CEECTTSSSTTCCCCCSSSCCCCS
T ss_pred CCCcCcCcCCC--CCEEECCC--CC-CceecccCCCCCCCCcCCCcCCcc
Confidence 35578 99987 89999998 55 46999999 78889999999984
No 37
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=98.62 E-value=1.3e-08 Score=72.09 Aligned_cols=39 Identities=33% Similarity=0.858 Sum_probs=32.5
Q ss_pred eeCCCC-CCCceeecCCCCCCcceeeccCc--CCcCCCc-ccccCC
Q psy7929 218 VCQQVS-YGEMIGCDNPDCPIEWFHFACVS--LTTKPKG-KWYCPK 259 (259)
Q Consensus 218 ~C~~~~-~g~mi~Cd~~~c~~~wfH~~Cv~--~~~~~~~-~w~C~~ 259 (259)
+|++.. .+.||.||.|+ .|||..|++ |+..|.| .||||.
T Consensus 23 ~C~~~~~~~~ll~CD~C~---~~yH~~Cl~Ppl~~~P~g~~W~C~~ 65 (70)
T 3asl_A 23 LCGGRQDPDKQLMCDECD---MAFHIYCLDPPLSSVPSEDEWYCPE 65 (70)
T ss_dssp TTCCCSCGGGEEECTTTC---CEEEGGGSSSCCSSCCSSSCCCCTT
T ss_pred CCCCcCCCCCEEEcCCCC---CceecccCCCCcCCCCCCCCcCCcC
Confidence 456654 47899999855 789999999 8889999 999984
No 38
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.56 E-value=3.7e-08 Score=70.99 Aligned_cols=41 Identities=32% Similarity=0.793 Sum_probs=34.4
Q ss_pred cc-eeCCCC-CCCceeecCCCCCCcceeeccCc--CCcCCCc-ccccCC
Q psy7929 216 YC-VCQQVS-YGEMIGCDNPDCPIEWFHFACVS--LTTKPKG-KWYCPK 259 (259)
Q Consensus 216 ~C-~C~~~~-~g~mi~Cd~~~c~~~wfH~~Cv~--~~~~~~~-~w~C~~ 259 (259)
+| +|++.. .++||.||.|+ .+||..|++ |+..|.| .||||.
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~---~~yH~~Cl~Ppl~~~P~g~~W~C~~ 73 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECN---VAYHIYCLNPPLDKVPEEEYWYCPS 73 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSC---CEEETTSSSSCCSSCCCSSCCCCTT
T ss_pred CCcCcCCcCCCCCEEEcCCCC---ccccccccCCCccCCCCCCCcCCcC
Confidence 45 788764 57899999855 689999999 8889999 999984
No 39
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=98.42 E-value=6.1e-08 Score=92.26 Aligned_cols=32 Identities=41% Similarity=0.981 Sum_probs=27.8
Q ss_pred CCceeecCCCCCCcceeeccCcCCcCC---CcccccCC
Q psy7929 225 GEMIGCDNPDCPIEWFHFACVSLTTKP---KGKWYCPK 259 (259)
Q Consensus 225 g~mi~Cd~~~c~~~wfH~~Cv~~~~~~---~~~w~C~~ 259 (259)
..||+||+|+ +|||+.||||+..+ .++||||.
T Consensus 56 ~~mI~CD~C~---~WfH~~CVgi~~~~a~~~~~y~Cp~ 90 (528)
T 3pur_A 56 FQWIGCDSCQ---TWYHFLCSGLEQFEYYLYEKFFCPK 90 (528)
T ss_dssp TSEEECTTTC---CEEEGGGTTCCGGGTTTEEECCCTT
T ss_pred CCEEECCCCC---cCCCCcCCCCChhHhcCCCeEECcC
Confidence 5799999966 99999999998865 47899985
No 40
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.34 E-value=1.6e-07 Score=72.63 Aligned_cols=40 Identities=28% Similarity=0.845 Sum_probs=33.6
Q ss_pred cc-eeCCCC-CCCceeecCCCCCCcceeeccCc--CCcCCCcccccC
Q psy7929 216 YC-VCQQVS-YGEMIGCDNPDCPIEWFHFACVS--LTTKPKGKWYCP 258 (259)
Q Consensus 216 ~C-~C~~~~-~g~mi~Cd~~~c~~~wfH~~Cv~--~~~~~~~~w~C~ 258 (259)
+| +|++.. .+.||.||.|+ .|||..|++ |+..|.|.||||
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~---~~yH~~Cl~ppl~~~P~g~W~C~ 103 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCD---RGYHMYCLNPPVAEPPEGSWSCH 103 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSC---CEEETTTSSSCCSSCCSSCCCCH
T ss_pred ccCcccccCCCCceEEcCCCC---ccccccccCCCccCCCCCCeECc
Confidence 46 777765 47899999855 789999999 888999999997
No 41
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.29 E-value=1.7e-07 Score=69.16 Aligned_cols=43 Identities=28% Similarity=0.779 Sum_probs=34.0
Q ss_pred CCccc-eeCCCCC---CCceeecCCCCCCcceeeccCcC--C----cCCCcccccC
Q psy7929 213 EPTYC-VCQQVSY---GEMIGCDNPDCPIEWFHFACVSL--T----TKPKGKWYCP 258 (259)
Q Consensus 213 ~~~~C-~C~~~~~---g~mi~Cd~~~c~~~wfH~~Cv~~--~----~~~~~~w~C~ 258 (259)
+..+| +|++... +.||.||.|+ ..||..|++. + ..|.+.|||+
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~---~~yH~~Cl~Ppl~~~~~~~p~g~W~C~ 67 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECH---NLYHQDCHKPQVTDKEVNDPRLVWYCA 67 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSC---CEEETTTSSSCCCHHHHHCTTCCCCCH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCC---CeEcCccCCCcccccccCCCCCCeeCc
Confidence 45678 9998753 7899999955 5699999984 3 2688999996
No 42
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=98.29 E-value=2.9e-07 Score=66.23 Aligned_cols=39 Identities=33% Similarity=0.854 Sum_probs=31.7
Q ss_pred eeCCCCC-CCceeecCCCCCCcceeeccCc--CCcCCCcc-cccCC
Q psy7929 218 VCQQVSY-GEMIGCDNPDCPIEWFHFACVS--LTTKPKGK-WYCPK 259 (259)
Q Consensus 218 ~C~~~~~-g~mi~Cd~~~c~~~wfH~~Cv~--~~~~~~~~-w~C~~ 259 (259)
+|++... +.||.||.|+ .+||+.|++ |...|.+. ||||.
T Consensus 31 vC~~~~d~~~ll~CD~C~---~~yH~~Cl~PpL~~~P~g~~W~C~~ 73 (77)
T 3shb_A 31 LCGGRQDPDKQLMCDECD---MAFHIYCLDPPLSSVPSEDEWYCPE 73 (77)
T ss_dssp TTCCCSCGGGEEECTTTC---CEEETTTSSSCCSSCCSSSCCCCTT
T ss_pred ccCCCCCCcceeEeCCCC---CccCcccCCCcccCCCCCCceECcC
Confidence 5665543 5799999855 689999999 88899988 99984
No 43
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=98.23 E-value=3.5e-07 Score=78.52 Aligned_cols=41 Identities=34% Similarity=0.891 Sum_probs=31.0
Q ss_pred cc-eeCCCC-CCCceeecCCCCCCcceeeccCc--CCcCCCc-ccccCC
Q psy7929 216 YC-VCQQVS-YGEMIGCDNPDCPIEWFHFACVS--LTTKPKG-KWYCPK 259 (259)
Q Consensus 216 ~C-~C~~~~-~g~mi~Cd~~~c~~~wfH~~Cv~--~~~~~~~-~w~C~~ 259 (259)
.| +|++.. .+.|+.||.|+ .|||..|++ |+..|.| .||||.
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~---~~yH~~CL~PPL~~vP~G~~W~Cp~ 221 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECD---MAFHIYCLDPPLSSVPSEDEWYCPE 221 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSC---CEECSCC--CCCCSCCSSSCCCCGG
T ss_pred CCcCCCCCCCCCCeEEcCCCC---cceeCccCCCCcccCCCCCCCCCcC
Confidence 46 787765 47899999955 689999999 8888998 999984
No 44
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.16 E-value=1.1e-06 Score=67.70 Aligned_cols=41 Identities=39% Similarity=0.872 Sum_probs=33.1
Q ss_pred cc-eeCCCC--CCCceeecCCCCCCcceeeccC--cCCcCCCcccccCC
Q psy7929 216 YC-VCQQVS--YGEMIGCDNPDCPIEWFHFACV--SLTTKPKGKWYCPK 259 (259)
Q Consensus 216 ~C-~C~~~~--~g~mi~Cd~~~c~~~wfH~~Cv--~~~~~~~~~w~C~~ 259 (259)
+| +|+... .++||.||.|+ .+||+.|+ .|+..|.|.|||+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~---~~yH~~Cl~p~l~~~P~~~W~C~~ 108 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCD---RGFHMECCDPPLTRMPKGMWICQI 108 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTC---CEECGGGCSSCCSSCCSSCCCCTT
T ss_pred ccccccCcCCCccceEEcCCCC---CeeecccCCCCCCCCCCCCeECCC
Confidence 46 777653 36799999955 78999999 58889999999984
No 45
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.05 E-value=1.7e-06 Score=66.22 Aligned_cols=40 Identities=30% Similarity=0.786 Sum_probs=32.5
Q ss_pred cc-eeCCCCC-CCceeecCCCCCCcceeeccCc--CCcCCCcccccC
Q psy7929 216 YC-VCQQVSY-GEMIGCDNPDCPIEWFHFACVS--LTTKPKGKWYCP 258 (259)
Q Consensus 216 ~C-~C~~~~~-g~mi~Cd~~~c~~~wfH~~Cv~--~~~~~~~~w~C~ 258 (259)
+| +|++... ..||.||.|+ .|||..|++ ++..|.+.||||
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~---~~yH~~Cl~ppl~~~P~g~W~C~ 99 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCD---KGYHTFCLQPVMKSVPTNGWKCK 99 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSC---CEEEGGGSSSCCSSCCSSCCCCH
T ss_pred cccccCccCCCCCeeECCCCC---cHHhHHhcCCccccCCCCCcCCc
Confidence 45 6777643 4599999865 789999998 788889999997
No 46
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=97.69 E-value=9.4e-06 Score=64.88 Aligned_cols=41 Identities=32% Similarity=0.775 Sum_probs=33.5
Q ss_pred Cccc-eeCCCCCCCceeecCCCCCCcceeeccCcCC-------c--CCCcccccCC
Q psy7929 214 PTYC-VCQQVSYGEMIGCDNPDCPIEWFHFACVSLT-------T--KPKGKWYCPK 259 (259)
Q Consensus 214 ~~~C-~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~~~-------~--~~~~~w~C~~ 259 (259)
..|| +|... |++|+||. |++- ||..|+... . .|.+.|+|+.
T Consensus 63 ~d~C~vC~~G--G~LlcCD~--Cpr~-Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~ 113 (142)
T 2lbm_A 63 DEQCRWCAEG--GNLICCDF--CHNA-FCKKCILRNLGRKELSTIMDENNQWYCYI 113 (142)
T ss_dssp BCSCSSSCCC--SSEEECSS--SCCE-EEHHHHHHHTCHHHHHHHHTSTTCCCCTT
T ss_pred CCeecccCCC--CcEEeCCC--CCCe-eeHhhcCCCCChhhhhhcccCCCCCEeec
Confidence 5689 99998 99999997 7765 999999832 2 4789999973
No 47
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=97.62 E-value=7.2e-06 Score=64.51 Aligned_cols=41 Identities=32% Similarity=0.763 Sum_probs=33.2
Q ss_pred CCccc-eeCCCCCCCceeecCCCCCCcceeeccCcC-------CcC--CCcccccC
Q psy7929 213 EPTYC-VCQQVSYGEMIGCDNPDCPIEWFHFACVSL-------TTK--PKGKWYCP 258 (259)
Q Consensus 213 ~~~~C-~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~~-------~~~--~~~~w~C~ 258 (259)
...|| +|... |++|+||. |++. ||..|+.. ... |.+.|+|+
T Consensus 56 ~~~~C~vC~dG--G~LlcCd~--Cpr~-Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~ 106 (129)
T 3ql9_A 56 MDEQCRWCAEG--GNLICCDF--CHNA-FCKKCILRNLGRRELSTIMDENNQWYCY 106 (129)
T ss_dssp CBSSCTTTCCC--SEEEECSS--SSCE-EEHHHHHHHTCHHHHHHHTCTTSCCCCT
T ss_pred CCCcCeecCCC--CeeEecCC--Cchh-hhHHHhCCCcchhHHHHhccCCCCeEcC
Confidence 45689 99988 99999997 7765 99999983 233 78899997
No 48
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=97.57 E-value=5e-05 Score=57.98 Aligned_cols=43 Identities=26% Similarity=0.789 Sum_probs=33.5
Q ss_pred Cccc-eeCCCCC-CCceeecCCCCCCcceeeccCcCCcCC--CcccccCC
Q psy7929 214 PTYC-VCQQVSY-GEMIGCDNPDCPIEWFHFACVSLTTKP--KGKWYCPK 259 (259)
Q Consensus 214 ~~~C-~C~~~~~-g~mi~Cd~~~c~~~wfH~~Cv~~~~~~--~~~w~C~~ 259 (259)
..+| +|+.... .+||.|+. |+ ..||+.|+++...+ .+.|+|++
T Consensus 7 ~~~C~~C~~~g~~~~ll~C~~--C~-~~~H~~Cl~~~~~~~~~~~W~C~~ 53 (111)
T 2ysm_A 7 GANCAVCDSPGDLLDQFFCTT--CG-QHYHGMCLDIAVTPLKRAGWQCPE 53 (111)
T ss_dssp CSCBTTTCCCCCTTTSEECSS--SC-CEECTTTTTCCCCTTTSTTCCCTT
T ss_pred CCCCcCCCCCCCCcCCeECCC--CC-CCcChHHhCCccccccccCccCCc
Confidence 4467 9998853 56899998 55 56999999987665 57999984
No 49
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.50 E-value=1.6e-05 Score=61.23 Aligned_cols=41 Identities=32% Similarity=0.727 Sum_probs=31.3
Q ss_pred cc-eeCCCC--------CCCceeecCCCCCCcceeeccCcCC-----cCCCcccccCC
Q psy7929 216 YC-VCQQVS--------YGEMIGCDNPDCPIEWFHFACVSLT-----TKPKGKWYCPK 259 (259)
Q Consensus 216 ~C-~C~~~~--------~g~mi~Cd~~~c~~~wfH~~Cv~~~-----~~~~~~w~C~~ 259 (259)
+| +|.++. .++||.|+. |+ ..||..|++++ ..+.+.|+|+.
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~--C~-~~~H~~Cl~~~~~~~~~~~~~~W~C~~ 57 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCAD--CG-RSGHPTCLQFTLNMTEAVKTYKWQCIE 57 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSS--SC-CEECTTTTTCCHHHHHHHHHTTCCCGG
T ss_pred cCccCCCCccccccCCCCCCCeEeCC--CC-CccchhhCCChhhhhhccCCCccCccc
Confidence 67 887654 258999998 55 56999999986 34578999973
No 50
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.49 E-value=2.1e-05 Score=60.36 Aligned_cols=42 Identities=21% Similarity=0.539 Sum_probs=31.8
Q ss_pred ccc-eeCCCC-------CCCceeecCCCCCCcceeeccCcCC-----cCCCcccccCC
Q psy7929 215 TYC-VCQQVS-------YGEMIGCDNPDCPIEWFHFACVSLT-----TKPKGKWYCPK 259 (259)
Q Consensus 215 ~~C-~C~~~~-------~g~mi~Cd~~~c~~~wfH~~Cv~~~-----~~~~~~w~C~~ 259 (259)
.+| +|.+.. .++||.|++|. .+||+.|+++. ..+.+.|+|++
T Consensus 6 ~~C~~C~~~~~~~~~g~~~~Ll~C~~C~---~~~H~~Cl~~~~~~~~~~~~~~W~C~~ 60 (112)
T 3v43_A 6 PICSFCLGTKEQNREKKPEELISCADCG---NSGHPSCLKFSPELTVRVKALRWQCIE 60 (112)
T ss_dssp SSBTTTCCCTTCCTTSCCCCCEECTTTC---CEECHHHHTCCHHHHHHHHTSCCCCTT
T ss_pred ccccccCCchhhCcCCCchhceEhhhcC---CCCCCchhcCCHHHHHHhhcccccccc
Confidence 467 887652 35799999954 67999999874 23578999985
No 51
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=95.90 E-value=0.0038 Score=47.67 Aligned_cols=31 Identities=26% Similarity=0.643 Sum_probs=24.7
Q ss_pred CceeecCCCCCCcceeeccCcCCcC------CCcccccCC
Q psy7929 226 EMIGCDNPDCPIEWFHFACVSLTTK------PKGKWYCPK 259 (259)
Q Consensus 226 ~mi~Cd~~~c~~~wfH~~Cv~~~~~------~~~~w~C~~ 259 (259)
.||.|+.|+ +|||..|+++... ..+.|+||.
T Consensus 74 ~m~~C~~C~---~~~H~~C~~~~~~~~~~~~~~~~~~C~~ 110 (117)
T 4bbq_A 74 KLMECCICN---EIVHPGCLQMDGEGLLNEELPNCWECPK 110 (117)
T ss_dssp SCEEETTTC---CEECGGGCCSCCCCEECSSSSSEEECTT
T ss_pred ceEEeeecC---CeEECCCCCCCccccccccCCCCeECCC
Confidence 499999976 9999999997543 245699984
No 52
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=95.67 E-value=0.27 Score=36.09 Aligned_cols=96 Identities=15% Similarity=0.280 Sum_probs=68.1
Q ss_pred hHHHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChh-HHH-HHHHHHHHHHHHHHHhhHHHH
Q psy7929 5 YLEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKD-KKK-ETLAEIQKYFDKTKEYGDDKV 82 (259)
Q Consensus 5 yLedfld~ie~LP~El~r~l~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~-~~~~~I~~~~~~~~~l~dEKv 82 (259)
-+|+.++.+-.|..++.|.=..|.-+|.++..-...|...-+..-.+...+... .|. .+-++|.+..++..++.+.--
T Consensus 7 ~~~~~~~~~~~~~~~~~ri~~aig~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsa 86 (114)
T 2xzr_A 7 KIEEILSKIYHIENEIARIKKLIGAIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIE 86 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhhhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999988887764443332222222111 222 455689999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7929 83 QLAIQTYEMVDKYIRKLDT 101 (259)
Q Consensus 83 ~LA~~a~dlVd~hirrLD~ 101 (259)
+|+...|-+ ++-+.||..
T Consensus 87 aLlsk~yh~-ene~ar~kk 104 (114)
T 2xzr_A 87 EILSKIYHI-ENEIARIKK 104 (114)
T ss_dssp HHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHhhHH-HHHHHHHHH
Confidence 888888754 333545443
No 53
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=93.77 E-value=0.016 Score=46.84 Aligned_cols=44 Identities=32% Similarity=0.788 Sum_probs=33.5
Q ss_pred CCCCccc-eeCCCCCCCceeecCCCCCCcceeeccCcCCcCC--------Cccccc
Q psy7929 211 PNEPTYC-VCQQVSYGEMIGCDNPDCPIEWFHFACVSLTTKP--------KGKWYC 257 (259)
Q Consensus 211 ~~~~~~C-~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~~~~~~--------~~~w~C 257 (259)
+.-..|| +|... |++|.|||..|++- |=..||.+-..| .+.|.|
T Consensus 76 DG~~~yC~wC~~G--g~l~~Cdn~~C~r~-FC~~CI~~nvG~~~~~~i~~~d~W~C 128 (159)
T 3a1b_A 76 DGYQSYCTICCGG--REVLMCGNNNCCRC-FCVECVDLLVGPGAAQAAIKEDPWNC 128 (159)
T ss_dssp TSSBSSCTTTSCC--SEEEECSSTTTCCE-EEHHHHHHHTCTTHHHHHHTSSSCCC
T ss_pred CCCcceeeEecCC--CeEEeeCCCCCCCc-hhHHHHHHhcCHhHHHHHhccCCCEE
Confidence 3346799 99987 89999999889865 989998743332 467887
No 54
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=93.34 E-value=0.022 Score=52.31 Aligned_cols=43 Identities=33% Similarity=0.892 Sum_probs=33.4
Q ss_pred CCCccc-eeCCCCCCCceeecCCCCCCcceeeccCcCCcCC--------Cccccc
Q psy7929 212 NEPTYC-VCQQVSYGEMIGCDNPDCPIEWFHFACVSLTTKP--------KGKWYC 257 (259)
Q Consensus 212 ~~~~~C-~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~~~~~~--------~~~w~C 257 (259)
.-..|| +|... |++++|||+.|++- |=..|+..--.| .+.|.|
T Consensus 91 G~~~yCr~C~~G--g~l~~Cdn~~C~r~-FC~~Ci~~n~g~~~~~~i~~~d~W~C 142 (386)
T 2pv0_B 91 GYQSYCSICCSG--ETLLICGNPDCTRC-YCFECVDSLVGPGTSGKVHAMSNWVC 142 (386)
T ss_dssp SSBCSCTTTCCC--SSCEECCSTTCCCE-ECHHHHHHHTCTTHHHHHHHCSSCCC
T ss_pred CCcccceEcCCC--CeEEEeCCCCCCcc-hHHHHHHHhcChhHHHHhhccCCceE
Confidence 346699 99988 89999999999965 888998743333 367888
No 55
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=91.89 E-value=3.7 Score=38.87 Aligned_cols=99 Identities=15% Similarity=0.217 Sum_probs=57.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CC-hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy7929 18 IELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMKH-YS-KDKKKETLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDKY 95 (259)
Q Consensus 18 ~El~r~l~~irelD~~~~~~~~~i~~~~~~~~~~~~~-~~-~~~~~~~~~~I~~~~~~~~~l~dEKv~LA~~a~dlVd~h 95 (259)
.+|...+..||..=..++...+.+++.+.......+. +. ..+....+.+|.+.|.+-+..-++||+---+...+|.+.
T Consensus 60 rDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsn 139 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKN 139 (562)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333344444444444443332221 11 012223555666677777777777776666777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy7929 96 IRKLDTDLARFEQEIQEKALK 116 (259)
Q Consensus 96 irrLD~dl~~~e~el~~~~~~ 116 (259)
|+.+=.+|.+||.+|..+++.
T Consensus 140 Ledq~~kIQRLEvDIdiqirs 160 (562)
T 3ghg_A 140 VRAQLVDMKRLEVDIDIKIRS 160 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 888888999999988887553
No 56
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=89.87 E-value=0.22 Score=36.04 Aligned_cols=30 Identities=33% Similarity=0.853 Sum_probs=25.1
Q ss_pred ccc-eeCCCCCCCceeecCCCCCCcceeeccC
Q psy7929 215 TYC-VCQQVSYGEMIGCDNPDCPIEWFHFACV 245 (259)
Q Consensus 215 ~~C-~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv 245 (259)
+-| +|++...|--|+|....|. .+||+.|.
T Consensus 18 l~C~iC~~~~~GAciqC~~~~C~-~~fHv~CA 48 (87)
T 2lq6_A 18 LTCYLCKQKGVGASIQCHKANCY-TAFHVTCA 48 (87)
T ss_dssp CCBTTTTBCCSSCEEECSCTTTC-CEEEHHHH
T ss_pred CCCcCCCCCCCcEeEecCCCCCC-CcCcHHHH
Confidence 346 9988767999999998898 57999994
No 57
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=87.11 E-value=9.8 Score=35.06 Aligned_cols=36 Identities=11% Similarity=0.133 Sum_probs=24.3
Q ss_pred HHHHHHHhhc-ccHHHHHhHHHHHHHHHHHHHHHHHH
Q psy7929 6 LEQYLDSLDS-LPIELQRNFTLMRELDSRAQDVMKTI 41 (259)
Q Consensus 6 Ledfld~ie~-LP~El~r~l~~irelD~~~~~~~~~i 41 (259)
|.+||...+. ||.+|+..-..+++++....+...-+
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lv 61 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLI 61 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777765 77888877777777766665554433
No 58
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=86.45 E-value=0.55 Score=33.74 Aligned_cols=29 Identities=24% Similarity=0.549 Sum_probs=23.7
Q ss_pred ccc-eeCCCCCCCceeecCCCCCCcceeeccCc
Q psy7929 215 TYC-VCQQVSYGEMIGCDNPDCPIEWFHFACVS 246 (259)
Q Consensus 215 ~~C-~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~ 246 (259)
..| +|.+...+.++.|.-| .+ =||..|+.
T Consensus 16 ~~C~VC~~~t~~~l~pCRvC--~R-vfH~~CL~ 45 (89)
T 1wil_A 16 EMCDVCEVWTAESLFPCRVC--TR-VFHDGCLR 45 (89)
T ss_dssp CCCTTTCCCCSSCCSSCSSS--SS-CCCHHHHH
T ss_pred cccCccccccccceeccccc--cc-cccHhhcc
Confidence 367 9998888999999985 44 49999975
No 59
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=81.39 E-value=14 Score=27.13 Aligned_cols=83 Identities=14% Similarity=0.225 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHHHH
Q psy7929 25 TLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGDD----KVQLAIQTYEMVDKYIRKLD 100 (259)
Q Consensus 25 ~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~dE----Kv~LA~~a~dlVd~hirrLD 100 (259)
.+....+..+..+..+|...+...-. ....++|...+.+|+..+++|.++-+. .-.+-...--.+...+|.--
T Consensus 15 elFe~YE~df~~l~~~i~~kl~~i~~---~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk 91 (102)
T 2qyw_A 15 EHFEKLHEIFRGLLEDLQGVPERLLG---TAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYR 91 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc---cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 45556677777777777766665322 224477888888888888887766543 33333334445556666667
Q ss_pred HHHHHHHHHH
Q psy7929 101 TDLARFEQEI 110 (259)
Q Consensus 101 ~dl~~~e~el 110 (259)
.+|.+|..++
T Consensus 92 ~dL~~lk~el 101 (102)
T 2qyw_A 92 KDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 7777766553
No 60
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=80.12 E-value=32 Score=31.20 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7929 92 VDKYIRKLDTDLARFEQEI 110 (259)
Q Consensus 92 Vd~hirrLD~dl~~~e~el 110 (259)
|...|+.+=.+|.+||.++
T Consensus 139 Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 139 LQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444
No 61
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=79.80 E-value=34 Score=31.88 Aligned_cols=55 Identities=11% Similarity=0.158 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7929 63 TLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQEKALKN 117 (259)
Q Consensus 63 ~~~~I~~~~~~~~~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el~~~~~~~ 117 (259)
.+.++...|.+=+.+-++||.---+-+.+|.+.|+.+=.+|.+||.++..+++.+
T Consensus 108 ~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q~~~C 162 (491)
T 1m1j_A 108 NYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKIRAC 162 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555555555566655446667777778888888888888888875543
No 62
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=78.93 E-value=9.7 Score=27.92 Aligned_cols=81 Identities=21% Similarity=0.398 Sum_probs=44.9
Q ss_pred HhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy7929 12 SLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGDDKVQLAIQTYEM 91 (259)
Q Consensus 12 ~ie~LP~El~r~l~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~dEKv~LA~~a~dl 91 (259)
+..+||.|-++ +-|-.++.++..+|++.... ++-+.++...|..--.++|.+-. ..++. -
T Consensus 7 d~s~LPpeqRk-----kkL~~Ki~el~~ei~ke~~~-------------regl~Km~~vY~~nP~~GD~~s~-~~~L~-e 66 (98)
T 2ke4_A 7 DFSHLPPEQQR-----KRLQQQLEERSRELQKEVDQ-------------REALKKMKDVYEKTPQMGDPASL-EPQIA-E 66 (98)
T ss_dssp CSSSSCHHHHH-----HHHHHHHHHHHHHHHHHHHH-------------HTHHHHHHHHHHHCGGGCCGGGS-HHHHH-H
T ss_pred hhccCCHHHHH-----HHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHcCCccCCHHHH-HHHHH-H
Confidence 56789998663 33334444444444322221 23455566666666666666544 33333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy7929 92 VDKYIRKLDTDLARFEQEIQE 112 (259)
Q Consensus 92 Vd~hirrLD~dl~~~e~el~~ 112 (259)
+.++|.+|..++.+|+.-+.+
T Consensus 67 ~~~kid~L~~el~K~q~~L~e 87 (98)
T 2ke4_A 67 TLSNIERLKLEVQKYEAWLAE 87 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 366677888887777765543
No 63
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=73.35 E-value=17 Score=26.42 Aligned_cols=36 Identities=8% Similarity=0.102 Sum_probs=11.4
Q ss_pred hhhhHHHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHH
Q psy7929 2 STSYLEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTI 41 (259)
Q Consensus 2 ~~~yLedfld~ie~LP~El~r~l~~irelD~~~~~~~~~i 41 (259)
++.|-+.++..| ||. .......+.|-.++.++..+.
T Consensus 4 t~~Yh~~wi~~l--~~~--s~~a~~~~~lk~E~~~lk~E~ 39 (93)
T 3sjb_C 4 TNKYHEKWISKF--APG--NELSKKYLAKVKERHELKEFN 39 (93)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHH--ccC--cHhHHHHHHHHHHHHHHHHHH
Confidence 467888888888 775 555566666655555555543
No 64
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=73.13 E-value=27 Score=32.61 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 77 YGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQE 109 (259)
Q Consensus 77 l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~e 109 (259)
....-|.+-+.+++.+.+.|.+|+.++..++..
T Consensus 160 ~~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~~~ 192 (461)
T 3ghg_B 160 NIPTNLRVLRSILENLRSKIQKLESDVSAQMEY 192 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 345567777777777888888888877766543
No 65
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=73.05 E-value=60 Score=30.20 Aligned_cols=18 Identities=11% Similarity=0.265 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy7929 87 QTYEMVDKYIRKLDTDLA 104 (259)
Q Consensus 87 ~a~dlVd~hirrLD~dl~ 104 (259)
..++-+-..|.|||.++.
T Consensus 139 ~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 139 NSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333345777777764
No 66
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=71.95 E-value=4.7 Score=30.87 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 79 DDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQ 111 (259)
Q Consensus 79 dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el~ 111 (259)
|+.-..-.++..+.|++|.++|.-++.-|.++.
T Consensus 89 De~k~~e~eIQKLTDkyIkkID~ll~~KEKEIm 121 (123)
T 3lhp_S 89 FDISQSLWDVQKLTDAAIKKIEAALADMEAWLT 121 (123)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355667788889999999999999998888774
No 67
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=71.83 E-value=39 Score=27.48 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=39.3
Q ss_pred hhhHHHHHHHhhcccHHHHHhH--HHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q psy7929 3 TSYLEQYLDSLDSLPIELQRNF--TLM-RELDSRAQDVMKTIDRVAEDYLDN 51 (259)
Q Consensus 3 ~~yLedfld~ie~LP~El~r~l--~~i-relD~~~~~~~~~i~~~~~~~~~~ 51 (259)
...|.+|++.+.+.=.+++..| +.| ++++....+.++.+...+..+...
T Consensus 30 ~~~~~~y~~~l~~~a~~~~eqL~~s~l~~el~~l~~e~~~~l~~~~~~l~~q 81 (191)
T 1nfn_A 30 LGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQ 81 (191)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567888888888888888888 777 999999999998888776666553
No 68
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=68.74 E-value=4.3 Score=30.31 Aligned_cols=45 Identities=22% Similarity=0.409 Sum_probs=29.8
Q ss_pred CCCCCccc---eeCCCCCCCceeecCCCCCCcceeeccCc--CCcCCCccccc
Q psy7929 210 DPNEPTYC---VCQQVSYGEMIGCDNPDCPIEWFHFACVS--LTTKPKGKWYC 257 (259)
Q Consensus 210 ~~~~~~~C---~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~--~~~~~~~~w~C 257 (259)
-|...+|| .|..-.-..-+.|.. |+.. ||..|+. |...+.+.|+|
T Consensus 49 ~P~g~W~Cp~c~C~~C~k~~~~~C~~--Cp~s-fC~~c~~g~l~~~~~~~~~c 98 (107)
T 4gne_A 49 PPYGKWECPWHQCDECSSAAVSFCEF--CPHS-FCKDHEKGALVPSALEGRLC 98 (107)
T ss_dssp CCSSCCCCGGGBCTTTCSBCCEECSS--SSCE-ECTTTCTTSCEECTTTTCEE
T ss_pred CCCCCEECCCCCCCcCCCCCCcCcCC--CCcc-hhhhccCCcceecCCCCcee
Confidence 34567886 333322222377887 7776 9999987 66677888997
No 69
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=68.62 E-value=31 Score=25.11 Aligned_cols=74 Identities=8% Similarity=0.135 Sum_probs=44.9
Q ss_pred hhhHHHHHHHhhcccHHHHHhHHHHHHH---HHHHHHH------HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q psy7929 3 TSYLEQYLDSLDSLPIELQRNFTLMREL---DSRAQDV------MKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDK 73 (259)
Q Consensus 3 ~~yLedfld~ie~LP~El~r~l~~irel---D~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~ 73 (259)
+..|+.|-+.+..|=.+|.+.+..|..+ +.+-+.+ +++.+..+...--...++++..|.....+|+..-..
T Consensus 14 SelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~d 93 (102)
T 2qyw_A 14 SEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKD 93 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999988655 4433322 222233333332233466777777666666655444
Q ss_pred HHH
Q psy7929 74 TKE 76 (259)
Q Consensus 74 ~~~ 76 (259)
+..
T Consensus 94 L~~ 96 (102)
T 2qyw_A 94 LAK 96 (102)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 70
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=68.40 E-value=70 Score=29.06 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 79 DDKVQLAIQTYEMVDKYIRKLDTDLARFEQEI 110 (259)
Q Consensus 79 dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el 110 (259)
+.|+.-++.-.+-++..|..|++.|+.+++++
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (471)
T 3mq9_A 435 DAEKAQGQKKVEELEGEITTLNHKLQDASAEV 466 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444445555554444444
No 71
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=64.47 E-value=23 Score=27.99 Aligned_cols=92 Identities=16% Similarity=0.273 Sum_probs=45.5
Q ss_pred HHHhhcccHHHHHhHHHHHHH-HHH-HHHHHHHHHHH---HHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy7929 10 LDSLDSLPIELQRNFTLMREL-DSR-AQDVMKTIDRV---AEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGDDKVQL 84 (259)
Q Consensus 10 ld~ie~LP~El~r~l~~irel-D~~-~~~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~dEKv~L 84 (259)
-+.|.+||.||+.- +.|..| |.. ...+.+++++. +..|.+ .+..+ .+...++...+..+.....+-+.-
T Consensus 45 rq~Ia~LP~eVsd~-s~l~klkDk~~~e~l~~~veeA~~~L~eYn~---rL~~E--~~dR~~L~~~L~~~~~~~~~~l~e 118 (152)
T 4fla_A 45 RQKIASLPQEVQDV-SLLEKITDKEAAERLSKTVDEACLLLAEYNG---RLAAE--LEDRRQLARMLVEYTQNQKDVLSE 118 (152)
T ss_dssp HHHHHTSCGGGTCG-GGGGGCCSHHHHHHHHHHHHHHHHHHHHHHH---HHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCccccCH-HHHHHcccHHHHHHHHHHHHHHHHHHHHHHH---HHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688888888753 233333 333 34444444443 334433 22211 122234455555566666666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 85 AIQTYEMVDKYIRKLDTDLARFE 107 (259)
Q Consensus 85 A~~a~dlVd~hirrLD~dl~~~e 107 (259)
+...++-..+...|+.+.-.++.
T Consensus 119 ~e~~leeyK~Kl~rv~~vkkeL~ 141 (152)
T 4fla_A 119 KEKKLEEYKQKLARVTQVRKELK 141 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56655555555555444444333
No 72
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=63.78 E-value=11 Score=34.80 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 80 DKVQLAIQTYEMVDKYIRKLDTDLARFE 107 (259)
Q Consensus 80 EKv~LA~~a~dlVd~hirrLD~dl~~~e 107 (259)
+.|...+..+...+..|..|...+..++
T Consensus 105 ~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 105 NTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444444444444444555544444443
No 73
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=60.77 E-value=1.1e+02 Score=28.56 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy7929 96 IRKLDTDLARFEQEIQ 111 (259)
Q Consensus 96 irrLD~dl~~~e~el~ 111 (259)
+..|...|.+|+..+.
T Consensus 177 ~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 177 IDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444445555554443
No 74
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=60.34 E-value=2.4 Score=28.05 Aligned_cols=34 Identities=24% Similarity=0.532 Sum_probs=20.0
Q ss_pred CCCCccc-eeCCCCCCCceeecCCCCC--CcceeeccCc
Q psy7929 211 PNEPTYC-VCQQVSYGEMIGCDNPDCP--IEWFHFACVS 246 (259)
Q Consensus 211 ~~~~~~C-~C~~~~~g~mi~Cd~~~c~--~~wfH~~Cv~ 246 (259)
.++...| +|.....+++| --|.|. ..|||..|+.
T Consensus 3 ~~~~~~CrIC~~~~~~~l~--~PC~C~gs~~~~H~~Cl~ 39 (60)
T 1vyx_A 3 DEDVPVCWICNEELGNERF--RACGCTGELENVHRSCLS 39 (60)
T ss_dssp TCSCCEETTTTEECSCCCC--CSCCCSSGGGSCCHHHHH
T ss_pred CCCCCEeEEeecCCCCcee--cCcCCCCchhhhHHHHHH
Confidence 3445567 88765444443 222343 2589999985
No 75
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=58.67 E-value=8.2 Score=25.65 Aligned_cols=33 Identities=30% Similarity=0.905 Sum_probs=25.7
Q ss_pred CCccc-eeCCCCCC---CceeecCCCCCCcceeeccCcCC
Q psy7929 213 EPTYC-VCQQVSYG---EMIGCDNPDCPIEWFHFACVSLT 248 (259)
Q Consensus 213 ~~~~C-~C~~~~~g---~mi~Cd~~~c~~~wfH~~Cv~~~ 248 (259)
.+.+| +|+..-+| +-+.|.. |.+. +|-.|+...
T Consensus 22 ~pt~C~~C~~~l~Gl~~qg~~C~~--C~~~-~Hk~C~~~v 58 (65)
T 2enz_A 22 SPTFCEHCGTLLWGLARQGLKCDA--CGMN-VHHRCQTKV 58 (65)
T ss_dssp SCCBCSSSCCBCCCSSSCSEEESS--SCCE-ECTTTTTTS
T ss_pred CCcCchhcChhheecCCcccccCC--CCCc-cCHhHHhhC
Confidence 47899 99998876 5778987 5555 899998753
No 76
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.58 E-value=7.1 Score=27.36 Aligned_cols=33 Identities=30% Similarity=0.901 Sum_probs=25.5
Q ss_pred CCccc-eeCCCCCC---CceeecCCCCCCcceeeccCcCC
Q psy7929 213 EPTYC-VCQQVSYG---EMIGCDNPDCPIEWFHFACVSLT 248 (259)
Q Consensus 213 ~~~~C-~C~~~~~g---~mi~Cd~~~c~~~wfH~~Cv~~~ 248 (259)
.+.+| +|...-+| +-+.|.. |.+. +|-.|+...
T Consensus 27 ~pt~C~~C~~~lwGl~kqg~~C~~--C~~~-~Hk~C~~~v 63 (83)
T 2yuu_A 27 QPTFCSVCKDFVWGLNKQGYKCRQ--CNAA-IHKKCIDKI 63 (83)
T ss_dssp SCCCCSSSCCCCCSSSCCEEEETT--TCCE-ECTTGGGTC
T ss_pred CCcChhhcChhhccccccccccCC--cCCe-eChhhhhhC
Confidence 47799 99998776 5788988 5555 899998753
No 77
>2yf2_A C4B binding protein; immune system, complement system; 2.24A {Gallus gallus}
Probab=58.41 E-value=31 Score=22.39 Aligned_cols=37 Identities=16% Similarity=0.339 Sum_probs=33.0
Q ss_pred cccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7929 15 SLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDN 51 (259)
Q Consensus 15 ~LP~El~r~l~~irelD~~~~~~~~~i~~~~~~~~~~ 51 (259)
.||.+=.|.|-+||.|=..+|.+..++....++|+.+
T Consensus 24 ~~P~~~~rTLLEi~KL~LEIQKL~~EL~glskefleh 60 (65)
T 2yf2_A 24 HVPTEDVKTLLEIRKLFLEIQKLKVELQGLSKEFLEH 60 (65)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHH
Confidence 7999999999999999999999999998888888763
No 78
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=58.10 E-value=7.2 Score=26.73 Aligned_cols=32 Identities=19% Similarity=0.624 Sum_probs=17.9
Q ss_pred CCceeecCCCCCCcceeeccCcCCc-CCCcccccC
Q psy7929 225 GEMIGCDNPDCPIEWFHFACVSLTT-KPKGKWYCP 258 (259)
Q Consensus 225 g~mi~Cd~~~c~~~wfH~~Cv~~~~-~~~~~w~C~ 258 (259)
...|+||++.|. -|=.+.= ++.. .-.++|||.
T Consensus 16 ~~WVQCd~p~C~-KWR~LP~-~~~~~~lpd~W~C~ 48 (69)
T 2e61_A 16 LVWVQCSFPNCG-KWRRLCG-NIDPSVLPDNWSCD 48 (69)
T ss_dssp CCEEECSSTTTC-CEEECCS-SCCTTTSCTTCCGG
T ss_pred CeEEEeCccccC-cccCCcc-ccccccCCCcCEeC
Confidence 458999966665 5643321 1111 113689994
No 79
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=57.95 E-value=36 Score=28.33 Aligned_cols=33 Identities=33% Similarity=0.325 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 79 DDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQ 111 (259)
Q Consensus 79 dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el~ 111 (259)
|+--..-..+..+.|++|.++|.-++.-|.|+.
T Consensus 175 De~k~~e~eiQklTd~~i~~iD~~l~~KEkEim 207 (209)
T 4gfq_A 175 DDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIM 207 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444455567888999999999999998888764
No 80
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=57.67 E-value=5.7 Score=27.51 Aligned_cols=34 Identities=29% Similarity=0.878 Sum_probs=25.9
Q ss_pred CCCccc-eeCCCCCC---CceeecCCCCCCcceeeccCcCC
Q psy7929 212 NEPTYC-VCQQVSYG---EMIGCDNPDCPIEWFHFACVSLT 248 (259)
Q Consensus 212 ~~~~~C-~C~~~~~g---~mi~Cd~~~c~~~wfH~~Cv~~~ 248 (259)
..++|| +|...-+| +-+.|.. |.+. +|-.|+...
T Consensus 32 ~~pt~C~~C~~~lwGl~kqG~~C~~--C~~~-~Hk~C~~~v 69 (77)
T 2enn_A 32 PQPTFCSVCHEFVWGLNKQGYQCRQ--CNAA-IHKKCIDKV 69 (77)
T ss_dssp SSCEECSSSCCEECCTTCCEEECSS--SCCE-EESGGGSSC
T ss_pred CCCcCccccChhhccccccccCcCC--CCCc-CCHhHHhhC
Confidence 347899 99998775 5678987 5555 999998753
No 81
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=56.75 E-value=39 Score=24.57 Aligned_cols=78 Identities=14% Similarity=0.279 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 31 DSRAQDVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGDD----KVQLAIQTYEMVDKYIRKLDTDLARF 106 (259)
Q Consensus 31 D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~dE----Kv~LA~~a~dlVd~hirrLD~dl~~~ 106 (259)
+..+..+..+|...+... ..++.++|...+.+|+..+++|.++-+. .-.+-...--.+...+|.--.+|.+|
T Consensus 11 E~df~~l~~~i~~kl~~i----~~~~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~l 86 (102)
T 1vcs_A 11 EQDFAVLTAEITSKIARV----PRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKL 86 (102)
T ss_dssp HHHHHHHHHHHHHHHHHG----GGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh----hccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHH
Confidence 455556666666655542 2344567888888888888888776543 22222223345556677777888888
Q ss_pred HHHHHH
Q psy7929 107 EQEIQE 112 (259)
Q Consensus 107 e~el~~ 112 (259)
..++..
T Consensus 87 k~elk~ 92 (102)
T 1vcs_A 87 ETDFKR 92 (102)
T ss_dssp HHHTHH
T ss_pred HHHHHH
Confidence 777654
No 82
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=55.91 E-value=68 Score=24.72 Aligned_cols=46 Identities=9% Similarity=0.208 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 68 QKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQEK 113 (259)
Q Consensus 68 ~~~~~~~~~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el~~~ 113 (259)
...+.+|.++-++|+..+....+-+++.+..+...+..++..+..-
T Consensus 93 E~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l 138 (151)
T 2zdi_C 93 ERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEV 138 (151)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788999999999999999999999999999888888777654
No 83
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=55.27 E-value=64 Score=26.83 Aligned_cols=99 Identities=15% Similarity=0.231 Sum_probs=56.1
Q ss_pred hHHHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhH-------HHHHHHHHHHHHHHHHHh
Q psy7929 5 YLEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKDK-------KKETLAEIQKYFDKTKEY 77 (259)
Q Consensus 5 yLedfld~ie~LP~El~r~l~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------~~~~~~~I~~~~~~~~~l 77 (259)
.|+.|+..+.+=|....+.|.-++-+=.. ..+.-...+..| ++....+|+. -...|..|...+..++.+
T Consensus 104 Ale~y~~ALq~~pp~~~~il~aLk~yira---e~KDR~Hti~hy-~Hv~~~dpe~A~~~k~~v~~hL~~id~r~NqsL~l 179 (211)
T 3umh_A 104 ALENYITALQAVPPRPRHVFNMLKKYVRA---EQKDRQHTLKHF-EHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSL 179 (211)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHH---HHHHHHHHHHHH-HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHH---HHHHHHhHHHHH-HHHHcCCHHHHHhcchHHHHHHHHHHHHHhHhHHH
Confidence 58899999999999888888777764211 111112223333 2222233321 113456677888888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 78 GDDKVQLAIQTYEMVDKYIRKLDTDLARFE 107 (259)
Q Consensus 78 ~dEKv~LA~~a~dlVd~hirrLD~dl~~~e 107 (259)
...==.||..+.+.|+..+.+.+.+...|+
T Consensus 180 L~~~P~l~~~i~~~~~e~l~~~~~~~~~~~ 209 (211)
T 3umh_A 180 LYNVPAVAEEIQDEVDELLQKEQNYSDDIE 209 (211)
T ss_dssp GGGSHHHHHHHHHHHHHHHC----------
T ss_pred HHhCcHHHHHHHHHHHHHHHHHhccchhhc
Confidence 877778888888888877777776665554
No 84
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=54.95 E-value=6.3 Score=24.51 Aligned_cols=32 Identities=28% Similarity=0.924 Sum_probs=24.9
Q ss_pred CCccc-eeCCCCCC---CceeecCCCCCCcceeeccCcC
Q psy7929 213 EPTYC-VCQQVSYG---EMIGCDNPDCPIEWFHFACVSL 247 (259)
Q Consensus 213 ~~~~C-~C~~~~~g---~mi~Cd~~~c~~~wfH~~Cv~~ 247 (259)
.+.+| +|+..-+| +-..|.. |.+. +|-.|+..
T Consensus 10 ~pt~C~~C~~~l~g~~~qg~~C~~--C~~~-~H~~C~~~ 45 (50)
T 1ptq_A 10 SPTFCDHCGSLLWGLVKQGLKCED--CGMN-VHHKCREK 45 (50)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETT--TCCE-ECHHHHTT
T ss_pred CCCCcCCCCceeeccCCccCEeCC--CCCe-ECHHHhhh
Confidence 47789 99988776 6788997 5555 89999864
No 85
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=54.60 E-value=79 Score=25.05 Aligned_cols=55 Identities=15% Similarity=0.309 Sum_probs=40.0
Q ss_pred hhHHHHHHHhhcccHHHHHhH--HHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCChh
Q psy7929 4 SYLEQYLDSLDSLPIELQRNF--TLM-RELDSRAQDVMKTIDRVAEDYLDNMKHYSKD 58 (259)
Q Consensus 4 ~yLedfld~ie~LP~El~r~l--~~i-relD~~~~~~~~~i~~~~~~~~~~~~~~~~~ 58 (259)
..+-+|+.-+.+-=.+...+| +.+ ++|+.++.+.+..+...+..+.....-++.+
T Consensus 31 ~~~w~Y~~q~~~~a~~~v~ql~~sel~qel~~~l~~~ld~l~~~~~~l~~~L~P~t~e 88 (165)
T 1gs9_A 31 GRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEE 88 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 456677777776655555444 356 8999999999999999888888766655543
No 86
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=54.58 E-value=46 Score=27.12 Aligned_cols=33 Identities=30% Similarity=0.440 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 79 DDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQ 111 (259)
Q Consensus 79 dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el~ 111 (259)
|+--..-..+..+.|++|.++|.-++.-|.|+.
T Consensus 151 D~~k~~e~~iQkltd~~i~~id~~~~~KEkEim 183 (185)
T 1dd5_A 151 DDAKRLENEIQKLTDEFIEKLDEVFEIKKEEIM 183 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444556677888889999999999988887764
No 87
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.56 E-value=10 Score=26.76 Aligned_cols=33 Identities=36% Similarity=0.938 Sum_probs=25.8
Q ss_pred CCccc-eeCCCCCC---CceeecCCCCCCcceeeccCcCC
Q psy7929 213 EPTYC-VCQQVSYG---EMIGCDNPDCPIEWFHFACVSLT 248 (259)
Q Consensus 213 ~~~~C-~C~~~~~g---~mi~Cd~~~c~~~wfH~~Cv~~~ 248 (259)
.+.+| +|...-+| +-+.|.. |.+. +|-.|+...
T Consensus 27 ~pt~C~~C~~~l~Gl~kqG~~C~~--C~~~-~Hk~C~~~v 63 (85)
T 2eli_A 27 SPTFCDHCGSLLYGLIHQGMKCDT--CDMN-VHKQCVINV 63 (85)
T ss_dssp SCCBCSSSCCBCCCSSSCEEECSS--SCCE-EETTTTTTS
T ss_pred CCcCCcccCccccccccCCCcCCC--cCCc-cCHhHHhhc
Confidence 47899 99998886 6778987 5555 999998753
No 88
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.48 E-value=8.3 Score=26.89 Aligned_cols=31 Identities=23% Similarity=0.627 Sum_probs=18.4
Q ss_pred Cccc-eeCCCCC-C-CceeecCCCCC--CcceeeccCc
Q psy7929 214 PTYC-VCQQVSY-G-EMIGCDNPDCP--IEWFHFACVS 246 (259)
Q Consensus 214 ~~~C-~C~~~~~-g-~mi~Cd~~~c~--~~wfH~~Cv~ 246 (259)
...| ||..... + .+|. -|.|. ..|||..|+.
T Consensus 15 ~~~C~IC~~~~~~~~~l~~--pC~C~Gs~h~fH~~Cl~ 50 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLIT--PCHCTGSLHFVHQACLQ 50 (80)
T ss_dssp SCCCSSSCCCCCSSSCEEC--SSSCCSSSCCEETTHHH
T ss_pred CCCCeEcCccccCCCeeEe--ccccCCcCCeeCHHHHH
Confidence 3456 8876532 3 3442 23343 3789999985
No 89
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=53.07 E-value=1.4e+02 Score=27.67 Aligned_cols=13 Identities=15% Similarity=0.179 Sum_probs=4.7
Q ss_pred HHHHhHHHHHHHH
Q psy7929 19 ELQRNFTLMRELD 31 (259)
Q Consensus 19 El~r~l~~irelD 31 (259)
++...=..|+.+.
T Consensus 457 e~~~~~~~i~~l~ 469 (597)
T 3oja_B 457 EVNELRAEVQQLT 469 (597)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 90
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=52.87 E-value=49 Score=26.92 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 79 DDKVQLAIQTYEMVDKYIRKLDTDLARFEQEI 110 (259)
Q Consensus 79 dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el 110 (259)
|+--..-..+..+.|++|.++|.-++.-|.|+
T Consensus 152 D~~k~~e~~iQkltd~~i~~id~~~~~KEkEi 183 (185)
T 1eh1_A 152 DETKRAEAEIQKITDEFIAKADQLAEKKEQEI 183 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667788888999999999988888776
No 91
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=51.98 E-value=57 Score=26.55 Aligned_cols=33 Identities=27% Similarity=0.364 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 79 DDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQ 111 (259)
Q Consensus 79 dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el~ 111 (259)
|+--..-..+..+.|+++.++|.-++.-|.|+.
T Consensus 151 D~~k~~e~~iQkltd~~i~~id~~~~~KEkEim 183 (185)
T 1ise_A 151 DDDRRSQDDVQKLTDAAIKKIEAALADKEAELM 183 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556677888889999999999988888774
No 92
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=50.52 E-value=48 Score=27.00 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 79 DDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQ 111 (259)
Q Consensus 79 dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el~ 111 (259)
|+--..-..+..+.|+++.++|.-++.-|.|+.
T Consensus 151 D~~k~~e~~iQkltd~~i~~id~~~~~KEkEim 183 (185)
T 1is1_A 151 DEDRKAQEEIQKLTDVAVKKIDEVLAAKEKELM 183 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444556677888889999999999988887764
No 93
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=50.38 E-value=55 Score=26.63 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 79 DDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQ 111 (259)
Q Consensus 79 dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el~ 111 (259)
|+--..-..+..+.|+++.++|.-++.-|.|+.
T Consensus 151 D~~k~~e~~iQkltd~~i~~id~~~~~KEkEim 183 (185)
T 1wqg_A 151 DEVGRAEKDLDKTTHQYVTQIDELVKHKEGELL 183 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555556677888889999999999988888774
No 94
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=49.26 E-value=8.6 Score=24.13 Aligned_cols=33 Identities=24% Similarity=0.726 Sum_probs=25.0
Q ss_pred CCccc-eeCCCCCCCceeecCCCCCCcceeeccCcCCc
Q psy7929 213 EPTYC-VCQQVSYGEMIGCDNPDCPIEWFHFACVSLTT 249 (259)
Q Consensus 213 ~~~~C-~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~~~~ 249 (259)
.+.+| +|++.-+ +-+.|.. |.+. +|-.|+....
T Consensus 13 ~pt~C~~C~~~l~-qG~~C~~--C~~~-~H~~C~~~v~ 46 (52)
T 1faq_A 13 KLAFCDICQKFLL-NGFRCQT--CGYK-FHEHCSTKVP 46 (52)
T ss_dssp SCEECTTSSSEEC-SEEECTT--TTCC-BCSTTSSSSS
T ss_pred CCcCCCCcccccc-cCCEeCC--CCCe-EChhHHhhCc
Confidence 47899 9988766 7788987 5554 8999987543
No 95
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=49.07 E-value=18 Score=23.52 Aligned_cols=29 Identities=10% Similarity=0.347 Sum_probs=15.4
Q ss_pred HHHHHHHhhcccHHHHHhHHHHHHHHHHHHHH
Q psy7929 6 LEQYLDSLDSLPIELQRNFTLMRELDSRAQDV 37 (259)
Q Consensus 6 Ledfld~ie~LP~El~r~l~~irelD~~~~~~ 37 (259)
+++||+.|. .++.....++.+|..++..+
T Consensus 25 VD~FLd~v~---~~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 25 VNEFLAQVR---KDYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 566666655 45555555555555554443
No 96
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=46.99 E-value=1.7e+02 Score=26.75 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=23.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 72 DKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQ 108 (259)
Q Consensus 72 ~~~~~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~ 108 (259)
+..+.-.+.-|..-+.+++..+..|..|...+..++.
T Consensus 97 ~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 97 EASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445556666666666677777777776666654
No 97
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=46.61 E-value=1.5e+02 Score=28.02 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 80 DKVQLAIQTYEMVDKYIRKLDTDLARF 106 (259)
Q Consensus 80 EKv~LA~~a~dlVd~hirrLD~dl~~~ 106 (259)
..|++-+..++-+-..|+|||.||...
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdiq 157 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDIK 157 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555688888887543
No 98
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=44.61 E-value=74 Score=21.85 Aligned_cols=41 Identities=5% Similarity=0.067 Sum_probs=25.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 71 FDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQ 111 (259)
Q Consensus 71 ~~~~~~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el~ 111 (259)
|+.+++..+|.+..=....+.+++.|...|..+..|..++.
T Consensus 24 Lq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 24 LQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555566666667777777777777766654
No 99
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=44.15 E-value=1.3e+02 Score=24.52 Aligned_cols=39 Identities=18% Similarity=0.139 Sum_probs=19.4
Q ss_pred HHHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy7929 6 LEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRV 44 (259)
Q Consensus 6 Ledfld~ie~LP~El~r~l~~irelD~~~~~~~~~i~~~ 44 (259)
+++|.+.+..|-.||.-.-..=|+|......-+...+..
T Consensus 19 ~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~ 57 (189)
T 2v71_A 19 SMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQR 57 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544444444443333
No 100
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=42.89 E-value=7.5 Score=25.96 Aligned_cols=32 Identities=34% Similarity=0.954 Sum_probs=24.9
Q ss_pred CCccc-eeCCCCCC---CceeecCCCCCCcceeeccCcC
Q psy7929 213 EPTYC-VCQQVSYG---EMIGCDNPDCPIEWFHFACVSL 247 (259)
Q Consensus 213 ~~~~C-~C~~~~~g---~mi~Cd~~~c~~~wfH~~Cv~~ 247 (259)
.+.+| +|...-+| +-+.|.. |.+. +|-.|+..
T Consensus 23 ~pt~C~~C~~~l~Gl~~qg~~C~~--C~~~-~Hk~C~~~ 58 (66)
T 1y8f_A 23 TPTYCYECEGLLWGIARQGMRCTE--CGVK-CHEKCQDL 58 (66)
T ss_dssp SCCCCTTTCCCCCSSCCEEEEETT--TCCE-ECTTHHHH
T ss_pred CCcChhhcChhhcccCcceeEcCC--CCCe-eCHHHHhh
Confidence 47789 99998876 4677987 5555 89999864
No 101
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=41.68 E-value=33 Score=18.56 Aligned_cols=19 Identities=21% Similarity=0.606 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7929 91 MVDKYIRKLDTDLARFEQE 109 (259)
Q Consensus 91 lVd~hirrLD~dl~~~e~e 109 (259)
-+|..++||+.+.-++|.+
T Consensus 5 kldanvkrlekevgklege 23 (28)
T 4dac_A 5 KLDANVKRLEKEVGKLEGE 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eccccHHHHHHHHhhhhhh
Confidence 3567777888877777754
No 102
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=41.10 E-value=60 Score=24.58 Aligned_cols=34 Identities=29% Similarity=0.295 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 79 DDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQE 112 (259)
Q Consensus 79 dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el~~ 112 (259)
|+--.+-..+..+.|++|.++|.-++.=|.++-.
T Consensus 79 De~kr~e~eIQKLTDkyIkkID~ll~~KEKEI~~ 112 (121)
T 3lf9_A 79 FDISQALWEIQKLTDVAVKKIDEVLAAKEKELME 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667788899999999999999988888764
No 103
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=40.63 E-value=1.3e+02 Score=23.51 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCC--ChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy7929 42 DRVAEDYLDNMKHY--SKDKKKETLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYI 96 (259)
Q Consensus 42 ~~~~~~~~~~~~~~--~~~~~~~~~~~I~~~~~~~~~l~dEKv~LA~~a~dlVd~hi 96 (259)
.+.+..+|...+.+ +++...+.+.+++..+..+-.--.++|.-+..++..|+.-+
T Consensus 70 akqIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l 126 (151)
T 1yke_B 70 TRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLI 126 (151)
T ss_dssp HHHHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777765 45555566666666666666555566555555555554443
No 104
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=39.91 E-value=1.7e+02 Score=24.54 Aligned_cols=111 Identities=13% Similarity=0.096 Sum_probs=0.0
Q ss_pred ChhhhHHHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHH--HHHHHHHHHHHHHHHhh
Q psy7929 1 MSTSYLEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKK--ETLAEIQKYFDKTKEYG 78 (259)
Q Consensus 1 ~~~~yLedfld~ie~LP~El~r~l~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~I~~~~~~~~~l~ 78 (259)
||--+|...++ |..|-.+|.+.-..+++|-..+.++..++......+......+..-.+. ..-..|...-.++..+.
T Consensus 2 ~m~~~L~~L~~-LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~ 80 (256)
T 3na7_A 2 GSNTHLKQLIE-ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQ 80 (256)
T ss_dssp CCHHHHHHHHH-HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 79 DDKVQLAI-QTYEMVDKYIRKLDTDLARFEQEIQE 112 (259)
Q Consensus 79 dEKv~LA~-~a~dlVd~hirrLD~dl~~~e~el~~ 112 (259)
..=-.+.+ .-|+.+.+-|..+...+..++.++..
T Consensus 81 ~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile 115 (256)
T 3na7_A 81 KKMSEIKSERELRSLNIEEDIAKERSNQANREIEN 115 (256)
T ss_dssp HHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 105
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=39.49 E-value=1e+02 Score=21.91 Aligned_cols=31 Identities=6% Similarity=0.261 Sum_probs=27.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 20 LQRNFTLMRELDSRAQDVMKTIDRVAEDYLD 50 (259)
Q Consensus 20 l~r~l~~irelD~~~~~~~~~i~~~~~~~~~ 50 (259)
|+..|..+-++|.++..++......+..|..
T Consensus 3 iqERL~sL~~ID~~i~sLL~~as~~i~tls~ 33 (86)
T 3r84_A 3 IQERLKSLNDIETQLCSMLQEASQVTFIFGE 33 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6788999999999999999999999988865
No 106
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=39.44 E-value=1.9e+02 Score=25.12 Aligned_cols=84 Identities=7% Similarity=0.083 Sum_probs=42.6
Q ss_pred HhhcccHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcC----CCChhHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy7929 12 SLDSLPIELQRNFTL-MRELDSRAQDVMKTIDRVAEDYLDNMK----HYSKDKKKETLAEIQKYFDKTKEYGDDKVQLAI 86 (259)
Q Consensus 12 ~ie~LP~El~r~l~~-irelD~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~I~~~~~~~~~l~dEKv~LA~ 86 (259)
..+.||.|+|..|.. .++.-....+...+.+....+.++..+ .++++++....+..+..+.+.. ++-....
T Consensus 253 ~~~~L~~~~q~~l~~a~~~a~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~ 328 (365)
T 2hzl_A 253 AYEGLTPTYQSLLRTACHAADANMLQLYDWKNPTAIKSLVAQGTQLRPFSPEILQACFEAANEVYAEME----ASNPAFK 328 (365)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHH----HHCHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHCCCEEEeCCHHHHHHHHHHHHHHHHHHH----ccCHHHH
Confidence 456899999988877 455555544444444444334444444 2344444433333333333221 1222455
Q ss_pred HHHHHHHHHHHHH
Q psy7929 87 QTYEMVDKYIRKL 99 (259)
Q Consensus 87 ~a~dlVd~hirrL 99 (259)
.+++.|..+++.+
T Consensus 329 ~~~~~~~~~~~~~ 341 (365)
T 2hzl_A 329 KIWDSIKAFRSEH 341 (365)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655544
No 107
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=38.28 E-value=1.1e+02 Score=21.90 Aligned_cols=80 Identities=9% Similarity=0.128 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHhhH----HHHHH--HHHHHHHHHHHHHHHHHH
Q psy7929 29 ELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGD----DKVQL--AIQTYEMVDKYIRKLDTD 102 (259)
Q Consensus 29 elD~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~d----EKv~L--A~~a~dlVd~hirrLD~d 102 (259)
..+..+..+..+|...+... ..++.++|...+..|+..+.+|.++-+ |.-.+ -...--.+...+|.--.+
T Consensus 5 ~YE~df~~~~~~i~~~l~~~----~~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~d 80 (97)
T 3onj_A 5 SYESDFKTTLEQAKASLAEA----PSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKT 80 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHG----GGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----hccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 34555555566665555433 355667888888888888887776654 44444 223344566667777777
Q ss_pred HHH-HHHHHHH
Q psy7929 103 LAR-FEQEIQE 112 (259)
Q Consensus 103 l~~-~e~el~~ 112 (259)
|.+ +..++..
T Consensus 81 l~~~lk~~lk~ 91 (97)
T 3onj_A 81 IQSDIKRPLQS 91 (97)
T ss_dssp HHHHTHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 777 7766654
No 108
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.85 E-value=33 Score=22.40 Aligned_cols=30 Identities=20% Similarity=0.611 Sum_probs=18.7
Q ss_pred CCCccc-eeCCCCCCCceeecCCCCCCcceeeccCc
Q psy7929 212 NEPTYC-VCQQVSYGEMIGCDNPDCPIEWFHFACVS 246 (259)
Q Consensus 212 ~~~~~C-~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~ 246 (259)
.+...| +|.......++. . |- ..||..|+.
T Consensus 18 ~~~~~C~IC~~~~~~~~~~--~--Cg-H~fC~~Ci~ 48 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTI--D--CG-HNFCLKCIT 48 (73)
T ss_dssp CCCCBCTTTCSBCSSEEEC--T--TC-CEEEHHHHH
T ss_pred ccCCEeccCCcccCCeEEc--C--CC-ChhhHHHHH
Confidence 345667 998765433332 3 43 569999986
No 109
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=36.44 E-value=26 Score=22.71 Aligned_cols=31 Identities=29% Similarity=0.614 Sum_probs=18.1
Q ss_pred CCccc-eeCCCCC-CCceeecCCCCCCcceeeccCc
Q psy7929 213 EPTYC-VCQQVSY-GEMIGCDNPDCPIEWFHFACVS 246 (259)
Q Consensus 213 ~~~~C-~C~~~~~-g~mi~Cd~~~c~~~wfH~~Cv~ 246 (259)
+...| +|..... +..+..-. |. ..||..|+.
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~--C~-H~fc~~Ci~ 45 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLP--CM-HLFHQVCVD 45 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECT--TS-CEEEHHHHH
T ss_pred CCCCCeeCCccccCCCcEEEeC--CC-CHHHHHHHH
Confidence 34557 9977542 33333333 33 569999985
No 110
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=36.35 E-value=83 Score=22.50 Aligned_cols=26 Identities=8% Similarity=0.057 Sum_probs=15.1
Q ss_pred hHHHHHHHhhcccHHHHHhHHHHHHH
Q psy7929 5 YLEQYLDSLDSLPIELQRNFTLMREL 30 (259)
Q Consensus 5 yLedfld~ie~LP~El~r~l~~irel 30 (259)
.|+.|-..+..|=.+|.+.+..|..+
T Consensus 2 lF~~YE~df~~~~~~i~~~l~~~~~~ 27 (97)
T 3onj_A 2 LLISYESDFKTTLEQAKASLAEAPSQ 27 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35555555556666666666655543
No 111
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=36.25 E-value=1.4e+02 Score=22.65 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCCC--ChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy7929 43 RVAEDYLDNMKHY--SKDKKKETLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIR 97 (259)
Q Consensus 43 ~~~~~~~~~~~~~--~~~~~~~~~~~I~~~~~~~~~l~dEKv~LA~~a~dlVd~hir 97 (259)
+.+..+|...+.+ +++...+.+.+++..+..+-.--.++|.-+..++..|+.-++
T Consensus 71 kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~ 127 (132)
T 1ykh_B 71 RQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIE 127 (132)
T ss_dssp HHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777665 455566677777777777777777777777777777766554
No 112
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=35.97 E-value=60 Score=23.52 Aligned_cols=69 Identities=10% Similarity=0.139 Sum_probs=32.8
Q ss_pred HHHHHHHhhcccHHHHHhHHHHHHHH--H---HHH---HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHH
Q psy7929 6 LEQYLDSLDSLPIELQRNFTLMRELD--S---RAQ---DVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKT 74 (259)
Q Consensus 6 Ledfld~ie~LP~El~r~l~~irelD--~---~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~ 74 (259)
|+.|-+.+..|=.+|.+.+..|..++ . .+. ..+++.+..+...--....+++..|.....+|+..-..+
T Consensus 7 Fe~YE~df~~l~~~i~~kl~~i~~~~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL 83 (102)
T 1vcs_A 7 GEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEM 83 (102)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHH
Confidence 34444444445556666666555441 1 111 222223333444333345666666766666665544444
No 113
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=35.93 E-value=43 Score=22.17 Aligned_cols=31 Identities=29% Similarity=0.584 Sum_probs=17.2
Q ss_pred CCccc-eeCCCCC-CCceeecCCCCCCcceeeccCc
Q psy7929 213 EPTYC-VCQQVSY-GEMIGCDNPDCPIEWFHFACVS 246 (259)
Q Consensus 213 ~~~~C-~C~~~~~-g~mi~Cd~~~c~~~wfH~~Cv~ 246 (259)
+...| +|..... +..+.--. |. ..||..|+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~--C~-H~fc~~Ci~ 46 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLP--CN-HLFHDSCIV 46 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECT--TS-CEEETTTTH
T ss_pred CCCCCeeCCccccCCCCEEEeC--CC-CeecHHHHH
Confidence 34567 9977643 22221112 33 469999985
No 114
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=35.48 E-value=1.5e+02 Score=24.79 Aligned_cols=95 Identities=15% Similarity=0.182 Sum_probs=51.4
Q ss_pred hHHHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChh-------HHHHHHHHHHHHHHHHHHh
Q psy7929 5 YLEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKD-------KKKETLAEIQKYFDKTKEY 77 (259)
Q Consensus 5 yLedfld~ie~LP~El~r~l~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~~~~~I~~~~~~~~~l 77 (259)
.|+.|+..+.+-|....+.|.-++-+=.. ..+.-...+..|- .....+|+ .-...|..|...+..++.+
T Consensus 111 Ale~y~~ALq~~pP~~~~vl~aLk~yira---e~KDR~Htl~hf~-Hv~~~dpe~A~~~k~~vl~hL~~Id~r~NqSL~l 186 (219)
T 3pmr_A 111 ALEGFLAALQADPPQAERVLLALRRYLRA---EQKEQRHTLRHYQ-HVAAVDPEKAQQMRFQVHTHLQVIEERVNQSLGL 186 (219)
T ss_dssp HHHHHHHHHTSSSCCHHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHH---HHHHHHhHHHHHH-HHHccCHHHHhhcchHHHHHHHHHHHHHhhhHHH
Confidence 57899999999998888888777663211 1111122233331 11122221 1224456677777777777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 78 GDDKVQLAIQTYEMVDKYIRKLDTDL 103 (259)
Q Consensus 78 ~dEKv~LA~~a~dlVd~hirrLD~dl 103 (259)
...==.|+..+.+.|+.-+.+-+.+.
T Consensus 187 L~~~P~l~~~i~~~i~~ll~~~~~~~ 212 (219)
T 3pmr_A 187 LDQNPHLAQELRPQIQELLHSEHLGP 212 (219)
T ss_dssp HTTSHHHHHHHHHHHHHHHC------
T ss_pred HHcCchHHHHHhHHHHHHHHhhccCC
Confidence 76666677777666665554444433
No 115
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=35.40 E-value=2.5e+02 Score=25.36 Aligned_cols=17 Identities=18% Similarity=-0.060 Sum_probs=6.3
Q ss_pred HHHHHHHhhHHHHHHHH
Q psy7929 70 YFDKTKEYGDDKVQLAI 86 (259)
Q Consensus 70 ~~~~~~~l~dEKv~LA~ 86 (259)
..++.+.+-..|-.||.
T Consensus 468 ~~~~~~~~~~~~~~~~~ 484 (487)
T 3oja_A 468 ANATLQELVVREQNLAS 484 (487)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHH
Confidence 33333333333333333
No 116
>2jwo_A RAG-2, V(D)J recombination-activating protein 2; phosphoinositide signaling, PHD domain, DNA recombination, DNA-binding, endonuclease, hydrolase; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 2v83_A* 2v85_A* 2v86_A* 2v87_A* 2v88_A* 2v89_A*
Probab=35.27 E-value=12 Score=26.17 Aligned_cols=30 Identities=37% Similarity=0.896 Sum_probs=22.1
Q ss_pred ceeecCCCCCCcceeeccCcCCcCC-------CcccccC
Q psy7929 227 MIGCDNPDCPIEWFHFACVSLTTKP-------KGKWYCP 258 (259)
Q Consensus 227 mi~Cd~~~c~~~wfH~~Cv~~~~~~-------~~~w~C~ 258 (259)
||.|...+ -.|.|..|..|.+.- ..++||.
T Consensus 38 mi~cs~g~--ghwvhaqcm~l~e~~l~~lsq~n~ky~c~ 74 (82)
T 2jwo_A 38 MIYCSHGD--GHWVHAQCMDLEERTLIHLSEGSNKYYCN 74 (82)
T ss_dssp CEECCSSS--CCEECSGGGTCCHHHHHHHTTSSCCCCCS
T ss_pred hhhcCCCc--chHHHHHHhhHHHHHHHHHhcCCcEEEEc
Confidence 99997653 489999998876522 3468885
No 117
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=35.26 E-value=13 Score=26.59 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=25.1
Q ss_pred Cccc-eeCCCCCCCceeecCCCCCCcceeeccCcCCc
Q psy7929 214 PTYC-VCQQVSYGEMIGCDNPDCPIEWFHFACVSLTT 249 (259)
Q Consensus 214 ~~~C-~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~~~~ 249 (259)
+..| .|.....|.+-.|..|+ + .+|..|+-++.
T Consensus 47 ~~~C~~C~~~~~~~~Y~C~~C~--f-~lH~~Ca~~p~ 80 (89)
T 1v5n_A 47 VYTCDKCEEEGTIWSYHCDECD--F-DLHAKCALNED 80 (89)
T ss_dssp SCCCTTTSCCCCSCEEECTTTC--C-CCCHHHHHCSS
T ss_pred CeEeCCCCCcCCCcEEEcCCCC--C-eEcHHhcCCCC
Confidence 3568 99988778888898754 4 49999987644
No 118
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=34.82 E-value=15 Score=24.21 Aligned_cols=33 Identities=27% Similarity=0.896 Sum_probs=24.6
Q ss_pred CCccc-eeCCCCCC---CceeecCCCCCCcceeeccCcCC
Q psy7929 213 EPTYC-VCQQVSYG---EMIGCDNPDCPIEWFHFACVSLT 248 (259)
Q Consensus 213 ~~~~C-~C~~~~~g---~mi~Cd~~~c~~~wfH~~Cv~~~ 248 (259)
.+.+| +|...-+| +-..|.. |.+- +|-.|....
T Consensus 19 ~pt~C~~C~~~l~Gl~~qg~~C~~--C~~~-~Hk~C~~~v 55 (65)
T 3uej_A 19 SPTFCDHCGSLLWGLVKQGLKCED--CGMN-VHHKCREKV 55 (65)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETT--TCCE-ECHHHHTTS
T ss_pred CCCcccccChhhhccCceeeECCC--CCCe-EchhHhhhC
Confidence 47789 99887765 5678987 5554 899998643
No 119
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=34.80 E-value=2e+02 Score=26.45 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy7929 92 VDKYIRKLDTDLARFEQEIQEK 113 (259)
Q Consensus 92 Vd~hirrLD~dl~~~e~el~~~ 113 (259)
|...|+.|+..+..++.++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 81 IVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455778888888888877664
No 120
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=34.46 E-value=1.4e+02 Score=22.25 Aligned_cols=104 Identities=11% Similarity=0.168 Sum_probs=63.5
Q ss_pred HHHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----------------CChhHHHHHHH----
Q psy7929 6 LEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMKH----------------YSKDKKKETLA---- 65 (259)
Q Consensus 6 Ledfld~ie~LP~El~r~l~~irelD~~~~~~~~~i~~~~~~~~~~~~~----------------~~~~~~~~~~~---- 65 (259)
++++.+-+..|-.++......+..|.....++...++..- . +..... +....+ .+-
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~-~-l~~~~~~~~lvplg~~~yv~a~i~~~~~--V~v~lG~ 78 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLS-D-IQGKDGSETLVPVGAGSFIKAELKDTSE--VIMSVGA 78 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HTTCTTCEEEEEEETTEEEEEECCSTTE--EEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-cccCCCCeEEEEcCCCcEEEEEECCCCE--EEEEcCC
Confidence 4555556666666666666666666666665555444321 1 221000 000000 000
Q ss_pred --HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 66 --EIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQEK 113 (259)
Q Consensus 66 --~I~~~~~~~~~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el~~~ 113 (259)
-+...+.+|.++-++|+..+....+-+.+.+..+...+..+...+...
T Consensus 79 g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 79 GVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp TEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134556778888999999999999999999999988888888777653
No 121
>2lh0_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; NMR {Saccharomyces cerevisiae}
Probab=34.12 E-value=19 Score=24.72 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=22.1
Q ss_pred hhcccHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy7929 13 LDSLPIELQRNFTLMRELDSRAQDVMKTID 42 (259)
Q Consensus 13 ie~LP~El~r~l~~irelD~~~~~~~~~i~ 42 (259)
|++||.+|+..+.-|=+-|-....+..++-
T Consensus 9 L~~LP~~Lq~kV~aIV~~~PsSl~VF~~Ly 38 (70)
T 2lh0_A 9 LDELPESLSRKIGTVVRVLPSSLEIFEELY 38 (70)
T ss_dssp GGGSCHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 789999999777777666666666655544
No 122
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=33.85 E-value=4.1e+02 Score=27.33 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=7.8
Q ss_pred HHHHhhHHHHHHHHHHHHH
Q psy7929 73 KTKEYGDDKVQLAIQTYEM 91 (259)
Q Consensus 73 ~~~~l~dEKv~LA~~a~dl 91 (259)
++..|..|+-.|=+++-++
T Consensus 1024 kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 1024 LVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333
No 123
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=33.84 E-value=2.3e+02 Score=24.52 Aligned_cols=42 Identities=19% Similarity=0.101 Sum_probs=23.1
Q ss_pred HhhcccHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7929 12 SLDSLPIELQRNFTL-MRELDSRAQDVMKTIDRVAEDYLDNMK 53 (259)
Q Consensus 12 ~ie~LP~El~r~l~~-irelD~~~~~~~~~i~~~~~~~~~~~~ 53 (259)
..+.||.|+|..|.. .++.-....+...+.+....+.++..+
T Consensus 260 ~~~~L~~~~q~~i~~a~~~a~~~~~~~~~~~~~~~~~~l~~~G 302 (361)
T 2zzv_A 260 RWRSLPKPLQERFIAAVHEYSWIHYAGIQKANLEAWPKYRQAG 302 (361)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCC
Confidence 456899999987776 355544444444443333333334333
No 124
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.76 E-value=9.2 Score=26.20 Aligned_cols=33 Identities=30% Similarity=0.726 Sum_probs=25.8
Q ss_pred CCccc-eeCCCCCC---CceeecCCCCCCcceeeccCcCC
Q psy7929 213 EPTYC-VCQQVSYG---EMIGCDNPDCPIEWFHFACVSLT 248 (259)
Q Consensus 213 ~~~~C-~C~~~~~g---~mi~Cd~~~c~~~wfH~~Cv~~~ 248 (259)
.++|| +|...-+| +-+.|.. |.+. +|-.|+...
T Consensus 27 ~pt~C~~C~~~lwGl~kqG~~C~~--C~~~-~Hk~C~~~v 63 (74)
T 2db6_A 27 KPKFCDVCARMIVLNNKFGLRCKN--CKTN-IHEHCQSYV 63 (74)
T ss_dssp SCEECSSSCCEECHHHHEEEEESS--SCCE-ECTTTTGGG
T ss_pred CCcCchhcChhhccccCCccccCC--CCCc-cChhHHhhC
Confidence 47899 99998776 5788998 5555 999998743
No 125
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=32.21 E-value=2.6e+02 Score=26.02 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 91 MVDKYIRKLDTDLARFEQEIQEK 113 (259)
Q Consensus 91 lVd~hirrLD~dl~~~e~el~~~ 113 (259)
.|...|..|+..+..++.++...
T Consensus 82 ~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 82 KLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556888888888888777654
No 126
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=32.13 E-value=8.7 Score=28.46 Aligned_cols=9 Identities=44% Similarity=1.556 Sum_probs=8.1
Q ss_pred cceeeccCc
Q psy7929 238 EWFHFACVS 246 (259)
Q Consensus 238 ~wfH~~Cv~ 246 (259)
.|||+.|+.
T Consensus 57 ~W~H~~Cf~ 65 (106)
T 2dmj_A 57 HWYHFSCFW 65 (106)
T ss_dssp EEEETTHHH
T ss_pred EeECcCccc
Confidence 799999975
No 127
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=31.89 E-value=1.9e+02 Score=24.85 Aligned_cols=47 Identities=13% Similarity=0.315 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 65 AEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQ 111 (259)
Q Consensus 65 ~~I~~~~~~~~~l~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el~ 111 (259)
.++...+..+..+-|.|+.-.+.-.+-|++.++++|..++++-..+.
T Consensus 201 ~QL~~s~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~ 247 (268)
T 2yo3_A 201 AQLKRSVEEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIY 247 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666778899999999999999999999999999988877665443
No 128
>1tt9_A Formimidoyltransferase-cyclodeaminase (formiminotransferase- cyclodeaminase) (FTCD)...; hepatitis autoantigen, intermediate channeling; 3.42A {Rattus norvegicus} PDB: 2pfd_A
Probab=30.54 E-value=3.6e+02 Score=25.59 Aligned_cols=77 Identities=6% Similarity=0.107 Sum_probs=44.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy7929 18 IELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNM--KHYSKDKKKETLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDK 94 (259)
Q Consensus 18 ~El~r~l~~irelD~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~I~~~~~~~~~l~dEKv~LA~~a~dlVd~ 94 (259)
.++++.+..+.++-.++.++.++=......|++.. ++-+++++...-..|++.+..+...-=+=+..+..++++++.
T Consensus 389 ~~m~~i~~~~~~l~~~Ll~LiDeDaeAF~~vm~AykLPK~TeEEK~~R~~aiq~Alk~Aa~VPL~ia~~~~e~l~l~~~ 467 (541)
T 1tt9_A 389 STMRRLIPPFHAASAQLTSLVDADARAFAACLGAIKLPKNTPEERDRRTCALQEGLRQAVAVPLKLAETVSQLWPALQE 467 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45565555555555555555544444444455433 244566777777889999988886655544444444444443
No 129
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=30.29 E-value=7.9 Score=29.23 Aligned_cols=9 Identities=44% Similarity=1.472 Sum_probs=8.2
Q ss_pred cceeeccCc
Q psy7929 238 EWFHFACVS 246 (259)
Q Consensus 238 ~wfH~~Cv~ 246 (259)
.|||+.|+.
T Consensus 49 ~W~H~~Cf~ 57 (117)
T 1uw0_A 49 EWYHIKCMF 57 (117)
T ss_dssp CBCCHHHHH
T ss_pred eeECcccch
Confidence 799999986
No 130
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=30.20 E-value=2.7e+02 Score=25.03 Aligned_cols=28 Identities=11% Similarity=0.342 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q psy7929 84 LAIQTYEMVDKY-------IRKLDTDLARFEQEIQ 111 (259)
Q Consensus 84 LA~~a~dlVd~h-------irrLD~dl~~~e~el~ 111 (259)
-+..+.+.+++. |..|+.++..++.+++
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (471)
T 3mq9_A 426 TVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQ 460 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556554 4445555555554443
No 131
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=30.09 E-value=2.2e+02 Score=24.62 Aligned_cols=62 Identities=15% Similarity=0.236 Sum_probs=32.7
Q ss_pred HHhhcccHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcC----CCChhHHHHHHHHHHHHHH
Q psy7929 11 DSLDSLPIELQRNFTLM-RELDSRAQDVMKTIDRVAEDYLDNMK----HYSKDKKKETLAEIQKYFD 72 (259)
Q Consensus 11 d~ie~LP~El~r~l~~i-relD~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~I~~~~~ 72 (259)
+..+.||.|.|..|... ++.-....+...+.+....+.++..+ .++++++.+..+..+..+.
T Consensus 235 ~~w~~L~~e~q~~i~~a~~e~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~e~~~~~~~~~~~v~~ 301 (328)
T 3u65_B 235 GSWARIPSRYHDAMLQAATRVRQRLANNLETLDRECSNNIQKAGVSIVHLTPQEIQEWRTEFAADVK 301 (328)
T ss_dssp HHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCHHHHHHHHHHHHHHHH
Confidence 45688999999877664 22333333344444444444444444 3566655544444444333
No 132
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=30.08 E-value=2.5e+02 Score=23.81 Aligned_cols=39 Identities=13% Similarity=0.064 Sum_probs=21.8
Q ss_pred HHhhcccHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy7929 11 DSLDSLPIELQRNFTLM-RELDSRAQDVMKTIDRVAEDYL 49 (259)
Q Consensus 11 d~ie~LP~El~r~l~~i-relD~~~~~~~~~i~~~~~~~~ 49 (259)
+..+.||.|+|..|... ++.-....+...+.+....+.+
T Consensus 218 ~~~~~L~~~~q~~l~~a~~~a~~~~~~~~~~~~~~~~~~l 257 (316)
T 2vpn_A 218 DFYEGLSEEDQQLVQDAADAAYDHTIEHIKGLSEESLEKI 257 (316)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999777763 4444444444444443333333
No 133
>3agt_A Hemerythrin-like domain protein DCRH; metal binding protein, oxygen binding, DIIRON, four-helix BU; 1.40A {Desulfovibrio vulgaris} PDB: 2awy_A 2avk_A 3agu_A 2awc_A
Probab=29.93 E-value=1.7e+02 Score=21.70 Aligned_cols=45 Identities=9% Similarity=0.011 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 63 TLAEIQKYFDKTKEYG-DDKVQLAIQTYEMVDKYIRKLDTDLARFE 107 (259)
Q Consensus 63 ~~~~I~~~~~~~~~l~-dEKv~LA~~a~dlVd~hirrLD~dl~~~e 107 (259)
.+.+|.........-. .-...|..-+.+.+-+||...|..+..+-
T Consensus 85 f~~~v~~l~~~~~~g~~~~~~~l~~~L~~Wl~~HI~~~D~~~~~~l 130 (136)
T 3agt_A 85 FVETVLKWEKQLAAGDPEVVMTTLRGLVDWLVNHIMKEDKKYEAYL 130 (136)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhHHHhHHHHHHH
Confidence 3344555444444311 12235667778888999999999998764
No 134
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=29.27 E-value=59 Score=20.29 Aligned_cols=18 Identities=33% Similarity=0.665 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy7929 92 VDKYIRKLDTDLARFEQE 109 (259)
Q Consensus 92 Vd~hirrLD~dl~~~e~e 109 (259)
+++.|..|+.|++.+|.+
T Consensus 36 lekdianlekdianlerd 53 (56)
T 3he4_A 36 LEKDIANLEKDIANLERD 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 455566666666666644
No 135
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Probab=29.15 E-value=72 Score=28.71 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=23.8
Q ss_pred HHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHH
Q psy7929 9 YLDSLDSLPIELQRNFTLMRELDSRAQDVMKTI 41 (259)
Q Consensus 9 fld~ie~LP~El~r~l~~irelD~~~~~~~~~i 41 (259)
|-+.++.||.++++.+..|++|..++..+..+.
T Consensus 40 ~~~~m~sLp~~v~~rI~aLk~lQ~E~~~le~ef 72 (359)
T 3fs3_A 40 YDDKMTDLTEEQKETLKKLKLYQKEYYDYESKF 72 (359)
T ss_dssp -----CCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999998888777766654
No 136
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.95 E-value=34 Score=23.04 Aligned_cols=30 Identities=23% Similarity=0.673 Sum_probs=18.4
Q ss_pred CCCccc-eeCCCCCCCceeecCCCCCCcceeeccCc
Q psy7929 212 NEPTYC-VCQQVSYGEMIGCDNPDCPIEWFHFACVS 246 (259)
Q Consensus 212 ~~~~~C-~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~ 246 (259)
++...| +|.......++ -. |- ..||..|+.
T Consensus 13 ~~~~~C~IC~~~~~~p~~--~~--Cg-H~fC~~Ci~ 43 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVV--TK--CR-HYFCESCAL 43 (81)
T ss_dssp CCCSBCSSSCSBCCSEEE--CT--TS-CEEEHHHHH
T ss_pred CCCCCCcCCCchhcCeeE--cc--CC-CHhHHHHHH
Confidence 445678 99877544333 12 33 569999974
No 137
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.75 E-value=30 Score=21.37 Aligned_cols=29 Identities=28% Similarity=0.578 Sum_probs=18.2
Q ss_pred CCCccc-eeCCCCCCC-ceeecCCCCCCcceeeccCc
Q psy7929 212 NEPTYC-VCQQVSYGE-MIGCDNPDCPIEWFHFACVS 246 (259)
Q Consensus 212 ~~~~~C-~C~~~~~g~-mi~Cd~~~c~~~wfH~~Cv~ 246 (259)
.+...| +|....... ++. |- ..||..|+.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~-----Cg-H~fC~~Ci~ 43 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIE-----CG-HNFCKACIT 43 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCS-----SC-CCCCHHHHH
T ss_pred ccCCCCccCCcccCccEeCC-----CC-CccCHHHHH
Confidence 345567 998775443 332 33 459999986
No 138
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=28.53 E-value=9.7 Score=28.67 Aligned_cols=11 Identities=27% Similarity=0.740 Sum_probs=9.0
Q ss_pred cceeeccCcCC
Q psy7929 238 EWFHFACVSLT 248 (259)
Q Consensus 238 ~wfH~~Cv~~~ 248 (259)
.|||+.|+...
T Consensus 52 ~W~H~~Cf~~~ 62 (114)
T 1v9x_A 52 MWNHASCILKK 62 (114)
T ss_dssp EEEEHHHHHTS
T ss_pred eeECccccchh
Confidence 89999998643
No 139
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=28.51 E-value=3.6e+02 Score=25.00 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 82 VQLAIQTYEMVDKYIRKLDTDLARFEQ 108 (259)
Q Consensus 82 v~LA~~a~dlVd~hirrLD~dl~~~e~ 108 (259)
|.+-+..++.+...|.+|+..+..+..
T Consensus 170 i~~L~~~~~~l~~ki~~l~~~~~~~~~ 196 (464)
T 1m1j_B 170 LRVLRAVIDSLHKKIQKLENAIATQTD 196 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777788888887765543
No 140
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.48 E-value=45 Score=21.85 Aligned_cols=30 Identities=27% Similarity=0.556 Sum_probs=17.5
Q ss_pred Cccc-eeCCCCC-CCceeecCCCCCCcceeeccCc
Q psy7929 214 PTYC-VCQQVSY-GEMIGCDNPDCPIEWFHFACVS 246 (259)
Q Consensus 214 ~~~C-~C~~~~~-g~mi~Cd~~~c~~~wfH~~Cv~ 246 (259)
...| +|..... +..+.--. |. ..||..|+.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~--C~-H~f~~~Ci~ 46 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICP--CK-HAFHRKCLI 46 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEET--TT-EEEEHHHHH
T ss_pred CCCCcCCCcccCCCCcEEEcC--CC-CEecHHHHH
Confidence 4467 9987743 33331112 33 679999985
No 141
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=28.17 E-value=5.1e+02 Score=26.63 Aligned_cols=21 Identities=10% Similarity=0.077 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy7929 80 DKVQLAIQTYEMVDKYIRKLD 100 (259)
Q Consensus 80 EKv~LA~~a~dlVd~hirrLD 100 (259)
+||.=-......+...+..|+
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 142
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.03 E-value=10 Score=29.44 Aligned_cols=9 Identities=33% Similarity=1.221 Sum_probs=8.1
Q ss_pred cceeeccCc
Q psy7929 238 EWFHFACVS 246 (259)
Q Consensus 238 ~wfH~~Cv~ 246 (259)
.|||+.|+.
T Consensus 61 ~W~H~~Cf~ 69 (134)
T 2cs2_A 61 RWYHPGCFV 69 (134)
T ss_dssp EEECHHHHH
T ss_pred eeECcCcCh
Confidence 799999985
No 143
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.78 E-value=58 Score=20.53 Aligned_cols=30 Identities=20% Similarity=0.611 Sum_probs=19.1
Q ss_pred CCCccc-eeCCCCCCCceeecCCCCCCcceeeccCc
Q psy7929 212 NEPTYC-VCQQVSYGEMIGCDNPDCPIEWFHFACVS 246 (259)
Q Consensus 212 ~~~~~C-~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~ 246 (259)
.+...| +|.......++. . |- ..||..|+.
T Consensus 18 ~~~~~C~IC~~~~~~p~~~--~--Cg-H~fC~~Ci~ 48 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTI--D--CG-HNFCLKCIT 48 (63)
T ss_dssp CCCCBCTTTCSBCSSCEEC--T--TS-SEECHHHHH
T ss_pred ccCCCCCcCCchhCCeEEe--C--CC-CcchHHHHH
Confidence 345667 998775544332 3 33 569999985
No 144
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.43 E-value=39 Score=22.10 Aligned_cols=29 Identities=24% Similarity=0.622 Sum_probs=17.4
Q ss_pred CCccc-eeCCCCCCCceeecCCCCCCcceeeccCc
Q psy7929 213 EPTYC-VCQQVSYGEMIGCDNPDCPIEWFHFACVS 246 (259)
Q Consensus 213 ~~~~C-~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~ 246 (259)
+...| +|..... +.+.. . |- ..||..|+.
T Consensus 14 ~~~~C~IC~~~~~-~~~~~-~--Cg-H~fC~~Ci~ 43 (71)
T 2d8t_A 14 TVPECAICLQTCV-HPVSL-P--CK-HVFCYLCVK 43 (71)
T ss_dssp SCCBCSSSSSBCS-SEEEE-T--TT-EEEEHHHHH
T ss_pred CCCCCccCCcccC-CCEEc-c--CC-CHHHHHHHH
Confidence 34567 9987643 32322 2 33 569999985
No 145
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=26.42 E-value=25 Score=31.81 Aligned_cols=33 Identities=33% Similarity=0.851 Sum_probs=22.4
Q ss_pred CCccc-eeCCCC--CCCc--eeecCCCCCCcceeeccCc
Q psy7929 213 EPTYC-VCQQVS--YGEM--IGCDNPDCPIEWFHFACVS 246 (259)
Q Consensus 213 ~~~~C-~C~~~~--~g~m--i~Cd~~~c~~~wfH~~Cv~ 246 (259)
+..-| +|-..- .|.+ ..|+|..|... ||..|+-
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~-FH~~CL~ 344 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLK-CHAVCLE 344 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCC-BCSGGGH
T ss_pred CCccCcccceeecCCCCCccccccCCccCCc-cchHHHH
Confidence 34456 775543 2544 46998889866 9999994
No 146
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=26.42 E-value=52 Score=22.30 Aligned_cols=19 Identities=11% Similarity=0.335 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7929 25 TLMRELDSRAQDVMKTIDR 43 (259)
Q Consensus 25 ~~irelD~~~~~~~~~i~~ 43 (259)
..+++-|...++++.++++
T Consensus 32 ~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 32 KRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 147
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=25.99 E-value=11 Score=28.41 Aligned_cols=10 Identities=40% Similarity=1.331 Sum_probs=8.7
Q ss_pred cceeeccCcC
Q psy7929 238 EWFHFACVSL 247 (259)
Q Consensus 238 ~wfH~~Cv~~ 247 (259)
.|||+.|+.-
T Consensus 70 ~WyH~~Cf~~ 79 (116)
T 3od8_A 70 HWYHFSCFWK 79 (116)
T ss_dssp EEEEHHHHHH
T ss_pred eeECCccChh
Confidence 7999999864
No 148
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=25.86 E-value=34 Score=30.61 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=25.9
Q ss_pred CCCCccc-eeCCCCCC---CceeecCCCCCCcceeeccCcC
Q psy7929 211 PNEPTYC-VCQQVSYG---EMIGCDNPDCPIEWFHFACVSL 247 (259)
Q Consensus 211 ~~~~~~C-~C~~~~~g---~mi~Cd~~~c~~~wfH~~Cv~~ 247 (259)
...+++| .|+..-+| .-..|..|. ..+|..|...
T Consensus 354 ~~~~t~C~~C~~~~~g~~~qg~~C~~C~---~~~h~~C~~~ 391 (406)
T 2vrw_B 354 FEETTSCKACQMLLRGTFYQGYRCYRCR---APAHKECLGR 391 (406)
T ss_dssp CSSCCBCTTTCCBCCSSSSCEEEETTTC---CEECGGGGGG
T ss_pred CCCCCCCccccchhceeCCCCCCCCCCc---Cccchhhhhh
Confidence 3568899 99988765 456699865 5699999873
No 149
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.84 E-value=35 Score=22.58 Aligned_cols=31 Identities=32% Similarity=0.582 Sum_probs=19.0
Q ss_pred CCccc-eeCCCC-CCCceeecCCCCCCcceeeccCc
Q psy7929 213 EPTYC-VCQQVS-YGEMIGCDNPDCPIEWFHFACVS 246 (259)
Q Consensus 213 ~~~~C-~C~~~~-~g~mi~Cd~~~c~~~wfH~~Cv~ 246 (259)
+...| +|.... .++.+..-. |. .-||..|+.
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~--C~-H~fh~~Ci~ 54 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLP--CN-HEFHAKCVD 54 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEET--TT-EEEETTHHH
T ss_pred CCCCCeECCcccCCCCeEEEEC--CC-CHhHHHHHH
Confidence 44567 998664 344444333 33 569999985
No 150
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=25.73 E-value=1.9e+02 Score=21.77 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=25.4
Q ss_pred HHHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 6 LEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDY 48 (259)
Q Consensus 6 Ledfld~ie~LP~El~r~l~~irelD~~~~~~~~~i~~~~~~~ 48 (259)
+|+.+..+-++-+|+.|.-.+|..|...++.+.+.....+.-+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~ig~L~~~l~~~aN~T~~aL~~L 65 (125)
T 4g2k_A 23 IEEILSKIYHIENEIARIKKLIGNLVSRLRRLANQTAKSLELL 65 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666667777777777777666666555444333333
No 151
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=25.66 E-value=11 Score=28.25 Aligned_cols=9 Identities=33% Similarity=1.221 Sum_probs=8.2
Q ss_pred cceeeccCc
Q psy7929 238 EWFHFACVS 246 (259)
Q Consensus 238 ~wfH~~Cv~ 246 (259)
.|||+.|+.
T Consensus 53 ~W~H~~Cf~ 61 (111)
T 3odc_A 53 RWYHPGCFV 61 (111)
T ss_dssp EEECHHHHH
T ss_pred eeEChhhcc
Confidence 799999986
No 152
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=25.57 E-value=45 Score=22.57 Aligned_cols=33 Identities=30% Similarity=0.801 Sum_probs=24.8
Q ss_pred CCCccc-eeCCCCCCCceeecCCCCCCcceeeccCcC
Q psy7929 212 NEPTYC-VCQQVSYGEMIGCDNPDCPIEWFHFACVSL 247 (259)
Q Consensus 212 ~~~~~C-~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~~ 247 (259)
..+++| .|...-+.+-+.|.. |.+- .|-.|...
T Consensus 33 ~~pt~C~~C~~~l~~qG~kC~~--C~~~-cHkkC~~~ 66 (72)
T 2fnf_X 33 GGPGWCDLCGREVLRQALRCAN--CKFT-CHSECRSL 66 (72)
T ss_dssp SSCCBCTTTSSBCSSCCEECTT--SSCE-ECTGGGGG
T ss_pred CCCcchhhhhHHHHhCcCccCC--CCCe-echhhhcc
Confidence 346788 998776666788997 5565 89999864
No 153
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=25.04 E-value=2.7e+02 Score=22.40 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 79 DDKVQLAIQTYEMVDKYIRKLDTDLARFEQEI 110 (259)
Q Consensus 79 dEKv~LA~~a~dlVd~hirrLD~dl~~~e~el 110 (259)
|+--..-..+..+.|+++.++|.-++.-|.|+
T Consensus 150 D~~k~~e~~iQkltd~~i~~id~~~~~KEkEi 181 (184)
T 1ge9_A 150 DEKKRALERLQKLTDKYIDEINKLMEAKEKEI 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566667888888999999999998888776
No 154
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.40 E-value=65 Score=21.32 Aligned_cols=30 Identities=23% Similarity=0.563 Sum_probs=18.1
Q ss_pred CCCccc-eeCCCCCCCceeecCCCCCCcceeeccCc
Q psy7929 212 NEPTYC-VCQQVSYGEMIGCDNPDCPIEWFHFACVS 246 (259)
Q Consensus 212 ~~~~~C-~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~ 246 (259)
.+...| +|.......++. . |- ..||..|+.
T Consensus 17 ~~~~~C~IC~~~~~~p~~~--~--Cg-H~fC~~Ci~ 47 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSL--D--CG-HSFCQACLT 47 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCC--S--SS-CCBCTTHHH
T ss_pred cCCCCCCCCCcccCCceeC--C--CC-CHHHHHHHH
Confidence 345667 998875443322 2 33 568888875
No 155
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.22 E-value=1.2e+02 Score=18.03 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH
Q psy7929 62 ETLAEIQKYFDKTKEYGDDKVQLAI 86 (259)
Q Consensus 62 ~~~~~I~~~~~~~~~l~dEKv~LA~ 86 (259)
+.-.+|...-.+...|.+||-+|--
T Consensus 12 EtkeQi~~l~~kl~~LkeEKHQLFl 36 (38)
T 2l5g_A 12 ETKEQILKLEEKLLALQEEKHQLFL 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777788888899987643
No 156
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=23.74 E-value=1.7e+02 Score=20.51 Aligned_cols=37 Identities=16% Similarity=0.131 Sum_probs=16.5
Q ss_pred hHHHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHH
Q psy7929 5 YLEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTI 41 (259)
Q Consensus 5 yLedfld~ie~LP~El~r~l~~irelD~~~~~~~~~i 41 (259)
.|..-++.|..|-.+.++...++..|-.+.+.+..+|
T Consensus 46 iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl 82 (88)
T 1nkp_A 46 ILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKL 82 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444433
No 157
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=23.71 E-value=2.1e+02 Score=20.64 Aligned_cols=26 Identities=8% Similarity=0.137 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 25 TLMRELDSRAQDVMKTIDRVAEDYLD 50 (259)
Q Consensus 25 ~~irelD~~~~~~~~~i~~~~~~~~~ 50 (259)
.+|+++|.++..-....+..+..++.
T Consensus 6 ~~~~~~~~~i~~W~~~~~~~ir~lL~ 31 (106)
T 3ag7_A 6 EEIKNIDAKIRKWSSGKSGNIRSLLS 31 (106)
T ss_dssp HHHHHHHHHHHHHHTTTTTCHHHHHT
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 35677777777666554444444443
No 158
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=23.44 E-value=9.4e+02 Score=28.15 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=20.8
Q ss_pred HHHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHH
Q psy7929 6 LEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTI 41 (259)
Q Consensus 6 Ledfld~ie~LP~El~r~l~~irelD~~~~~~~~~i 41 (259)
|.+--+.|+.|-.+|...-.++.+....+.+++.+|
T Consensus 1929 L~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i 1964 (3245)
T 3vkg_A 1929 LRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQM 1964 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666666666655555555555555555554
No 159
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=23.43 E-value=4 Score=23.97 Aligned_cols=13 Identities=31% Similarity=0.874 Sum_probs=9.5
Q ss_pred eeeccCcCCcCCC
Q psy7929 240 FHFACVSLTTKPK 252 (259)
Q Consensus 240 fH~~Cv~~~~~~~ 252 (259)
+...|+|++..|.
T Consensus 24 lymtcigittdpe 36 (40)
T 1erd_A 24 LYMTCIGITTDPE 36 (40)
T ss_dssp HHHHHHHHHTCTT
T ss_pred eeEEEEeeccCCC
Confidence 4578888887764
No 160
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=23.10 E-value=2.5e+02 Score=22.20 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=25.3
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHHHHHhhHH
Q psy7929 48 YLDNMKHYSKDKKKETLAEIQKYFDKTKEYGDD 80 (259)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~dE 80 (259)
-++...+++.++|.+.+..|+..+++..+-..|
T Consensus 115 ~vk~d~~Lsg~er~ekL~~~~~ei~e~~k~~~e 147 (161)
T 2ynq_A 115 QIKGDTDLSGDEKQKKLDEIDQEIKEYERERKE 147 (161)
T ss_dssp HHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667888888999898888888887665544
No 161
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=22.91 E-value=29 Score=19.41 Aligned_cols=25 Identities=32% Similarity=0.801 Sum_probs=17.1
Q ss_pred cc-eeCCCCC-CCceeecCCCCCCcceeeccC
Q psy7929 216 YC-VCQQVSY-GEMIGCDNPDCPIEWFHFACV 245 (259)
Q Consensus 216 ~C-~C~~~~~-g~mi~Cd~~~c~~~wfH~~Cv 245 (259)
-| .|++.-| .+.|..++- . ||-.|.
T Consensus 5 ~C~~C~k~Vy~~Ek~~~~g~----~-~Hk~CF 31 (31)
T 1zfo_A 5 NCARCGKIVYPTEKVNCLDK----F-WHKACF 31 (31)
T ss_dssp BCSSSCSBCCGGGCCCSSSS----C-CCGGGC
T ss_pred cCCccCCEEecceeEEECCe----E-ecccCC
Confidence 46 8887765 676767763 3 688884
No 162
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=22.77 E-value=1.7e+02 Score=22.43 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHH
Q psy7929 61 KETLAEIQKYFDKTKEYGDDKVQ 83 (259)
Q Consensus 61 ~~~~~~I~~~~~~~~~l~dEKv~ 83 (259)
...+..|............+|-.
T Consensus 133 ~~rl~eL~~~W~~L~~~~~~R~~ 155 (161)
T 3lbx_A 133 KAHIEELRHLWDLLLELTLEKGD 155 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555656555555555533
No 163
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=22.64 E-value=76 Score=21.75 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=27.2
Q ss_pred hHHHHHHHhhcccHHHHHhHHHHHHHHHHHHHHH
Q psy7929 5 YLEQYLDSLDSLPIELQRNFTLMRELDSRAQDVM 38 (259)
Q Consensus 5 yLedfld~ie~LP~El~r~l~~irelD~~~~~~~ 38 (259)
=.+++++.++.|=.|=..+|..+|+++.-+++..
T Consensus 17 Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e 50 (75)
T 3mtu_A 17 DKENALDRAEQAEADKDFYFGKLRNIELICQENE 50 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3577888888888888888888888888888753
No 164
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=22.57 E-value=3.6e+02 Score=23.02 Aligned_cols=17 Identities=29% Similarity=0.155 Sum_probs=13.0
Q ss_pred HHhhcccHHHHHhHHHH
Q psy7929 11 DSLDSLPIELQRNFTLM 27 (259)
Q Consensus 11 d~ie~LP~El~r~l~~i 27 (259)
+..+.||.|.|..|...
T Consensus 232 ~~w~~L~~e~q~~i~~a 248 (326)
T 3fxb_A 232 DFYDGLSAEDQQLVQNA 248 (326)
T ss_dssp HHHHHSCHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHH
Confidence 45678999999877664
No 165
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=22.08 E-value=2.2e+02 Score=20.41 Aligned_cols=27 Identities=4% Similarity=0.143 Sum_probs=15.0
Q ss_pred cHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy7929 17 PIELQRNFTLMRELDSRAQDVMKTIDR 43 (259)
Q Consensus 17 P~El~r~l~~irelD~~~~~~~~~i~~ 43 (259)
|.|+++-...|+.--..+++.+..+..
T Consensus 8 peElr~Fa~~L~~F~d~Lq~~~~~L~~ 34 (94)
T 3fx7_A 8 TEEVREFVGHLERFKELLREEVNSLSN 34 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677776666655554444444444443
No 166
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.93 E-value=34 Score=23.43 Aligned_cols=29 Identities=28% Similarity=0.870 Sum_probs=19.1
Q ss_pred Cccc-eeCCCCCCCceeecCCCCCCcceeeccCc
Q psy7929 214 PTYC-VCQQVSYGEMIGCDNPDCPIEWFHFACVS 246 (259)
Q Consensus 214 ~~~C-~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~ 246 (259)
...| +|...-. .=+.|.. |... ||..|+.
T Consensus 15 i~~C~IC~~~i~-~g~~C~~--C~h~-fH~~Ci~ 44 (74)
T 2ct0_A 15 VKICNICHSLLI-QGQSCET--CGIR-MHLPCVA 44 (74)
T ss_dssp SCBCSSSCCBCS-SSEECSS--SCCE-ECHHHHH
T ss_pred CCcCcchhhHcc-cCCccCC--CCch-hhHHHHH
Confidence 4457 9988753 1245553 6555 9999996
No 167
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=21.91 E-value=2.4e+02 Score=21.12 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=12.8
Q ss_pred ChhhhHHHHHHHhhcccHHHH
Q psy7929 1 MSTSYLEQYLDSLDSLPIELQ 21 (259)
Q Consensus 1 ~~~~yLedfld~ie~LP~El~ 21 (259)
|+.-+++.|++....+=..|.
T Consensus 1 m~~ell~~Fl~Ea~e~L~~l~ 21 (139)
T 2ld6_A 1 MMEEYLGVFVDETKEYLQNLN 21 (139)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHH
Confidence 556678888876654434444
No 168
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=21.90 E-value=4.8e+02 Score=24.16 Aligned_cols=45 Identities=13% Similarity=0.386 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 68 QKYFDKTKEYGDDKVQ--LAIQTYEMVDKYIRKLDTDLARFEQEIQEK 113 (259)
Q Consensus 68 ~~~~~~~~~l~dEKv~--LA~~a~dlVd~hirrLD~dl~~~e~el~~~ 113 (259)
.+.+++...+-.|-+. +.+.+ ..+..-+..+...|.+|+..+...
T Consensus 143 ~~mle~~~~~~~~~~~~~~~~~i-~~l~~~~~~~~~~i~~l~~~~~~~ 189 (461)
T 3ghg_B 143 SSELEKHQLYIDETVNSNIPTNL-RVLRSILENLRSKIQKLESDVSAQ 189 (461)
T ss_dssp HHHHHHHHTHHHHHHHTHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccchhHH-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444333343 23333 334445677777788887777654
No 169
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=21.26 E-value=1.8e+02 Score=19.19 Aligned_cols=44 Identities=9% Similarity=0.150 Sum_probs=29.4
Q ss_pred HHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 7 EQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLD 50 (259)
Q Consensus 7 edfld~ie~LP~El~r~l~~irelD~~~~~~~~~i~~~~~~~~~ 50 (259)
+.....|+.+=.++......-+-.|.++-.+.+++|..+..|.+
T Consensus 4 ~~L~~~IE~kR~eL~~l~~k~Gl~~~~vI~~SQeLD~LIn~Y~k 47 (62)
T 2bzb_A 4 GQLKNKIENKKKELIQLVARHGLDHDKVLLFSRDLDKLINKFMN 47 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666655555444577777778888888888876
No 170
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=21.10 E-value=3.3e+02 Score=22.03 Aligned_cols=43 Identities=19% Similarity=0.290 Sum_probs=22.4
Q ss_pred HHHHHHHhhcccHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 6 LEQYLDSLDSLPIELQ----RNFTLMRELDSRAQDVMKTIDRVAEDY 48 (259)
Q Consensus 6 Ledfld~ie~LP~El~----r~l~~irelD~~~~~~~~~i~~~~~~~ 48 (259)
|++|.++--.|=.||- +.=..+++|-.++..+..+++..-.+|
T Consensus 33 l~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~ 79 (189)
T 2v71_A 33 LVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKL 79 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677776666655555 222334444444444444555544444
No 171
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=20.21 E-value=2.5e+02 Score=20.26 Aligned_cols=33 Identities=3% Similarity=0.284 Sum_probs=20.4
Q ss_pred hhHHHHHHHhhcccHHHHHhHHHHHHHHHHHHH
Q psy7929 4 SYLEQYLDSLDSLPIELQRNFTLMRELDSRAQD 36 (259)
Q Consensus 4 ~yLedfld~ie~LP~El~r~l~~irelD~~~~~ 36 (259)
.++++|++.|+.+-.+|...=..+.+|......
T Consensus 5 ~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~ 37 (127)
T 1ez3_A 5 RFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSA 37 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888876666666555555555444443
No 172
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.04 E-value=49 Score=21.35 Aligned_cols=29 Identities=17% Similarity=0.559 Sum_probs=17.3
Q ss_pred CCCccc-eeCCCCCCCceeecCCCCCCcceeeccCc
Q psy7929 212 NEPTYC-VCQQVSYGEMIGCDNPDCPIEWFHFACVS 246 (259)
Q Consensus 212 ~~~~~C-~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~ 246 (259)
.+...| +|........+ . |- ..||..|+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~---~--Cg-H~fc~~Ci~ 42 (70)
T 2ecn_A 13 TDEEECCICMDGRADLIL---P--CA-HSFCQKCID 42 (70)
T ss_dssp CCCCCCSSSCCSCCSEEE---T--TT-EEECHHHHH
T ss_pred CCCCCCeeCCcCccCccc---C--CC-CcccHHHHH
Confidence 335567 89776434222 2 33 559999985
No 173
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=20.04 E-value=5.3e+02 Score=23.97 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy7929 92 VDKYIRKLDTDLARFEQEIQEK 113 (259)
Q Consensus 92 Vd~hirrLD~dl~~~e~el~~~ 113 (259)
|...|..|+..+..+++++...
T Consensus 128 l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 128 IRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888887777654
No 174
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=20.03 E-value=3.4e+02 Score=23.87 Aligned_cols=32 Identities=16% Similarity=0.378 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7929 78 GDDKVQLAIQTYEMVDKYIRKLDTDLARFEQE 109 (259)
Q Consensus 78 ~dEKv~LA~~a~dlVd~hirrLD~dl~~~e~e 109 (259)
.++.|..-+..++.++..|.+|...+..++..
T Consensus 24 ~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 24 HDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555566666666666655543
Done!