RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7929
(259 letters)
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 71
Score = 90.8 bits (225), Expect = 2e-24
Identities = 44/54 (81%), Positives = 48/54 (88%)
Query: 206 DMPVDPNEPTYCVCQQVSYGEMIGCDNPDCPIEWFHFACVSLTTKPKGKWYCPK 259
+ +DPNEPTYC+C QVSYGEMIGCDN CPIEWFHF+CVSLT KPKGKWYCPK
Sbjct: 8 EFAIDPNEPTYCLCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPK 61
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4
{Homo sapiens [TaxId: 9606]}
Length = 51
Score = 88.4 bits (219), Expect = 8e-24
Identities = 40/47 (85%), Positives = 44/47 (93%)
Query: 213 EPTYCVCQQVSYGEMIGCDNPDCPIEWFHFACVSLTTKPKGKWYCPK 259
EPTYC+C QVSYGEMIGCDNPDC IEWFHFACV LTTKP+GKW+CP+
Sbjct: 1 EPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPR 47
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 72.1 bits (176), Expect = 3e-17
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 9/62 (14%)
Query: 206 DMPVDPNEPTYCVC-QQVSYGEMIGCDNPDCPIEWFHFACVSLTTKPKG-------KWYC 257
+ P P CVC + MI C++P C W H CV L KP +YC
Sbjct: 8 EDPFQPEIKVRCVCGNSLETDSMIQCEDPRCH-VWQHVGCVILPDKPMDGNPPLPESFYC 66
Query: 258 PK 259
Sbjct: 67 EI 68
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 76
Score = 60.1 bits (145), Expect = 1e-12
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 11/62 (17%)
Query: 206 DMPVDPNEPTYCVCQQVSYGE-MIGCDNPDCPIEWFHFACVSLT-------TKPKGKWYC 257
+ V YC+C+Q MI CD + WFH CV ++ + + C
Sbjct: 8 ECEVYDPNALYCICRQPHNNRFMICCDRCEE---WFHGDCVGISEARGRLLERNGEDYIC 64
Query: 258 PK 259
P
Sbjct: 65 PN 66
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 79
Score = 54.7 bits (131), Expect = 9e-11
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 213 EPTYCVCQQVSY--GEMIGCDNPDCPIEWFHFACVSLTTKP---KGKWYCPK 259
P YC+C+Q MI C WFH +CV + + ++CP
Sbjct: 11 VPVYCLCRQPYNVNHFMIECGLCQD---WFHGSCVGIEEENAVDIDIYHCPD 59
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 72
Score = 53.1 bits (127), Expect = 2e-10
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 7/52 (13%)
Query: 212 NEPTYCVCQQVS--YGEMIGCDNPDCPIEWFHFACV--SLTTKPKGKWYCPK 259
N C C M+ CD W H C+ + K+ C +
Sbjct: 14 NWKVDCKCGTKDDDGERMLACDGCGV---WHHTRCIGINNADALPSKFLCFR 62
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 48.8 bits (116), Expect = 8e-09
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Query: 210 DPNEPTYCVCQQVSYGEMIGCDNPDCPIEWFHFACV--SLTTKPKGKWYCPK 259
D + VC+ GE++ CD +H C+ L P G+W CP+
Sbjct: 6 DHHMEFCRVCKDG--GELLCCDTCPS---SYHIHCLNPPLPEIPNGEWLCPR 52
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 47.7 bits (113), Expect = 2e-08
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 212 NEPTYC-VCQQVSYGEMIGCDNPDCPIEWFHFACV--SLTTKPKGKWYCPK 259
+ T C VCQ+ G+++ C+ C FH C +L P +W C
Sbjct: 5 DSATICRVCQKP--GDLVMCNQ--CEF-CFHLDCHLPALQDVPGEEWSCSL 50
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 64
Score = 42.3 bits (99), Expect = 2e-06
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 8/48 (16%)
Query: 217 CVCQQV--SYGEMIGCDNPDCPIEWFHFACVSLT---TKPKGKWYCPK 259
C + + I CD C WFH CV +T + ++ CP
Sbjct: 10 GACGESYAADEFWICCDL--CE-MWFHGKCVKITPARAEHIKQYKCPS 54
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription
factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 40.3 bits (94), Expect = 6e-06
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 217 CVCQQV-SYGEMIGCDNPDCPIEWFHFACVS--LTTKPKGKWYCPK 259
VC++ ++I CD C FH C+ L P G+W CP
Sbjct: 4 KVCRKKGEDDKLILCDE--CNK-AFHLFCLRPALYEVPDGEWQCPA 46
>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga
maritima [TaxId: 2336]}
Length = 184
Score = 35.3 bits (81), Expect = 0.003
Identities = 17/82 (20%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 34 AQDVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGDD---KVQLAIQTYE 90
+ + + A++ ++ K ++ ++E L +I++ K +D +++ IQ +
Sbjct: 105 TTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKED-QKEGLIPEDDAKRLENEIQ--K 161
Query: 91 MVDKYIRKLDTDLARFEQEIQE 112
+ D++I KLD ++EI E
Sbjct: 162 LTDEFIEKLDEVFEIKKEEIME 183
>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia
coli [TaxId: 562]}
Length = 185
Score = 34.6 bits (79), Expect = 0.006
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 33 RAQDVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGDD---KVQLAIQTY 89
R +D+ K + AE +++ +D + K K KE +D + Q +Q
Sbjct: 109 RRKDLTKIVRGEAEQARVAVRNVRRDANDKV-----KALLKDKEISEDDDRRSQDDVQ-- 161
Query: 90 EMVDKYIRKLDTDLARFEQEIQE 112
++ D I+K++ LA E E+ +
Sbjct: 162 KLTDAAIKKIEAALADKEAELMQ 184
>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 183
Score = 34.5 bits (79), Expect = 0.006
Identities = 12/81 (14%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 35 QDVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGDD---KVQLAIQTYEM 91
++ + + + A+ + K ++ +++ + E+ + K E G+D + + + +
Sbjct: 106 EERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIR-KEGEAGEDEVGRAEKDLD--KT 162
Query: 92 VDKYIRKLDTDLARFEQEIQE 112
+Y+ ++D + E E+ E
Sbjct: 163 THQYVTQIDELVKHKEGELLE 183
>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus
thermophilus [TaxId: 274]}
Length = 185
Score = 33.8 bits (77), Expect = 0.010
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 35 QDVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGDD---KVQLAIQTYEM 91
++ K + R Y + + ++ ++E L +++K K +D + + IQ ++
Sbjct: 108 EERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKL-AKELHLSEDETKRAEAEIQ--KI 164
Query: 92 VDKYIRKLDTDLARFEQEI 110
D++I K D + EQEI
Sbjct: 165 TDEFIAKADQLAEKKEQEI 183
>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex
aeolicus [TaxId: 63363]}
Length = 184
Score = 33.8 bits (77), Expect = 0.010
Identities = 18/94 (19%), Positives = 41/94 (43%), Gaps = 21/94 (22%)
Query: 19 ELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYG 78
+ L+ ++ A+ ++ + R A++ ++ ++ S+D+KK L +QK
Sbjct: 111 RRRELVRLLHKITEEARVRVRNVRREAKEMIEELEGISEDEKKRALERLQK--------- 161
Query: 79 DDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQE 112
+ DKYI +++ + E+EI
Sbjct: 162 ------------LTDKYIDEINKLMEAKEKEIMS 183
>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 185
Score = 33.0 bits (75), Expect = 0.019
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 24/97 (24%)
Query: 19 ELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNM---KHYSKDKKKETLAEIQKYFDKTK 75
+ ++R + ++ I R A + L + K S+D+ ++ EIQK
Sbjct: 109 RRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQK------ 162
Query: 76 EYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQE 112
+ D ++K+D LA E+E+ E
Sbjct: 163 ---------------LTDVAVKKIDEVLAAKEKELME 184
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4
[TaxId: 9606]}
Length = 144
Score = 32.1 bits (73), Expect = 0.024
Identities = 24/124 (19%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 7 EQYLDSLDS--LPIELQRNFT-LMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKKET 63
EQ + L S + EL+ M+EL + ++ + + VAE+ + + +
Sbjct: 24 EQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARL 83
Query: 64 LAEIQKYFDKTKEYGDDKVQLAIQTYE----MVDKYIRKLDTDLARFEQEIQEKALKNTT 119
A+++ + +Y + + Q+ E + ++RKL L R ++Q++
Sbjct: 84 GADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRL---AV 140
Query: 120 GGAG 123
AG
Sbjct: 141 YQAG 144
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 29.1 bits (64), Expect = 0.076
Identities = 9/49 (18%), Positives = 15/49 (30%)
Query: 210 DPNEPTYCVCQQVSYGEMIGCDNPDCPIEWFHFACVSLTTKPKGKWYCP 258
D + P +C + E +E H +C+S C
Sbjct: 3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQ 51
>d2nrka1 d.218.1.14 (A:4-170) Hypothetical protein GrpB
{Enterococcus faecalis [TaxId: 1351]}
Length = 167
Score = 27.7 bits (61), Expect = 1.2
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 72 DKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQEKALK 116
YG K QLA + +DKY+ D F ++I+++ALK
Sbjct: 123 AIATTYGTLKKQLAQAHPDSIDKYMDGKDA----FIKKIEKEALK 163
>d2qeec1 c.1.9.8 (C:2-416) Uncharacterized protein BH0493 {Bacillus
halodurans [TaxId: 86665]}
Length = 415
Score = 26.8 bits (59), Expect = 3.0
Identities = 5/104 (4%), Positives = 25/104 (24%), Gaps = 4/104 (3%)
Query: 10 LDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAE----DYLDNMKHYSKDKKKETLA 65
D + + + R ++ ++ +++ +E
Sbjct: 146 FDDNERISWLEGKQPDSRFHAALRLDPLLNEYEQTKHRLRDWGYKVNDEWNEGSIQEVKR 205
Query: 66 EIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQE 109
+ + ++ ++ R + L ++
Sbjct: 206 FLTDWIERMDPVYMAVSLPPTFSFPEESNRGRIIRDCLLPVAEK 249
>d2pv7a1 a.100.1.12 (A:244-371) Prephenate dehydrogenase TyrA
{Haemophilus influenzae [TaxId: 727]}
Length = 128
Score = 25.7 bits (56), Expect = 3.6
Identities = 8/73 (10%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 23 NFTLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEY-GDDK 81
+ L ++ + + I+ + + D + ++ ++ + F K +++ GD
Sbjct: 59 DAELYADIIMDKSENLAVIETLKQT-YDEALTFFENNDRQGFID---AFHKVRDWFGDYS 114
Query: 82 VQLAIQTYEMVDK 94
Q ++ +++ +
Sbjct: 115 EQFLKESRQLLQQ 127
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein
phosphatase 2A regulatory subunit B56-gamma {Human
(Homo sapiens) [TaxId: 9606]}
Length = 343
Score = 26.3 bits (58), Expect = 3.7
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 47 DYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYI 96
D L ++K K+ K+ L+E+ +Y + + + + M +
Sbjct: 29 DPLSDLK--WKEVKRAALSEMVEYITHNRNVITEPIYPEV--VHMFAVNM 74
>d1j5ya2 d.94.2.1 (A:68-174) Putative transcriptional regulator
TM1602, C-terminal domain {Thermotoga maritima [TaxId:
2336]}
Length = 107
Score = 25.4 bits (56), Expect = 4.0
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 8/45 (17%)
Query: 77 YGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQEKALKNTTGG 121
YG+ + + + + E V K++ ++ + + L +GG
Sbjct: 41 YGEIRGIIDVSSEEEVLKFVNLMEMA--------KTEPLLTLSGG 77
>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 824
Score = 26.5 bits (58), Expect = 4.2
Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 10 LDSLDSLPIELQRN--FTLMREL-DSRAQDVMKTI-----DRVAEDYLDNMKHYSKDKKK 61
++++ L R+ FTL+++ + +D + D + ++ +HY + K
Sbjct: 10 VENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPK 69
Query: 62 ETLAEIQKYFDKTKEY------GDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQEKAL 115
Y + E+ + V LA+ D+ +L D+ E+ ++ L
Sbjct: 70 RIY-----YL--SLEFYMGRTLQNTMVNLAL--ENACDEATYQLGLDMEELEEIEEDAGL 120
Query: 116 KNTTGGAG 123
N GG G
Sbjct: 121 GN--GGLG 126
>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}
Length = 240
Score = 25.9 bits (55), Expect = 4.6
Identities = 8/43 (18%), Positives = 12/43 (27%)
Query: 194 DPDVAAPSHDVLDMPVDPNEPTYCVCQQVSYGEMIGCDNPDCP 236
D + D Y V S+ +GC+ P
Sbjct: 178 DGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKP 220
>d1h21a_ a.138.1.3 (A:) Dimeric di-heme split-soret cytochrome c
{Desulfovibrio desulfuricans, ATCC 27774 [TaxId: 876]}
Length = 240
Score = 25.7 bits (56), Expect = 5.4
Identities = 8/33 (24%), Positives = 10/33 (30%)
Query: 120 GGAGGGGSGTGSGSGSAGGAASKSKRGRKKAKD 152
G GT G+ A GRK+
Sbjct: 68 NKGGISDWGTICGALYGAAATFSLFWGRKEVHP 100
>d1to6a_ c.141.1.1 (A:) Glycerate kinase GlxK {Neisseria
meningitidis, (serogroup A) [TaxId: 487]}
Length = 371
Score = 25.7 bits (56), Expect = 6.2
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 89 YEMVDKYIRKLDTDLARFEQEIQEKALKNTTGGAGGGGSG 128
+ +D + F +++ LK GAGGG +G
Sbjct: 210 KGLDSTMFEVVDQAIQDFYEKVSPATLKLKGAGAGGGIAG 249
>d1j7na2 d.92.1.14 (A:551-773) Anthrax toxin lethal factor, N- and
C-terminal domains {Bacillus anthracis [TaxId: 1392]}
Length = 223
Score = 25.3 bits (55), Expect = 8.1
Identities = 8/56 (14%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 43 RVAEDYLDNMKHYSKDKKKETLAEI-QKYFDKTKEYGDDKVQLAIQTYEMVDKYIR 97
+ ++ N+ Y + + E AE + + A +T++ ++ I+
Sbjct: 166 DIFKEEGSNLTSYGRTNEAEFFAEAFRLMHSTDHAERLKVQKNAPKTFQFINDQIK 221
>d1n81a_ a.185.1.1 (A:) Gametocyte protein Pfg27 {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 186
Score = 24.9 bits (54), Expect = 8.7
Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 23/105 (21%)
Query: 30 LDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKKETLA-----EIQKYFDKT-KEYGDDKVQ 83
L R + V DY+ + SKD +K A I++Y K Y ++
Sbjct: 11 LSPRIRKVGDIEFHACSDYIYLLMTLSKDPEKFNYALKDRVSIRRYVRKNQNRYNYFLIE 70
Query: 84 LAIQ----------------TYEMVDKYIRKLDTDLARFEQEIQE 112
+Q E+ + YI+K+D D EQ + E
Sbjct: 71 ERVQDNIVNRISDRLISYCTDKEVTEDYIKKID-DYLWVEQRVIE 114
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.130 0.377
Gapped
Lambda K H
0.267 0.0608 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 967,432
Number of extensions: 46584
Number of successful extensions: 176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 36
Length of query: 259
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 176
Effective length of database: 1,268,006
Effective search space: 223169056
Effective search space used: 223169056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.1 bits)