BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy793
(414 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 300 bits (767), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 164/402 (40%), Positives = 226/402 (56%), Gaps = 48/402 (11%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKG-KLGKALHFTGSRFH 68
N VF DV IG E+VGR+V+ELF IVPKTAENFRALCTGE G G GK LHF G F
Sbjct: 15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPF- 73
Query: 69 RIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNF 128
HRII +FMIQGGD +N
Sbjct: 74 -------------------------------------------HRIIKKFMIQGGDFSNQ 90
Query: 129 NGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVF 188
NGTGGESIYG FEDENF KH EG LS+AN G NTN SQFFIT P PHLDGK+VVF
Sbjct: 91 NGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGS-NTNGSQFFITTVPTPHLDGKHVVF 149
Query: 189 GCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWGVAENDGSQDVYPPFPEDW 248
G V +G GVA+ + VE + +KP C I G+L +DWG+ DGS D +P FPED
Sbjct: 150 GQVIKGMGVAKILENVEVKGEKPAKLCVIAECGELKEGDDWGIFPKDGSGDSHPDFPED- 208
Query: 249 KSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKH 308
++ + ++++ + +KN GN +FK A +KY K +RY++ +
Sbjct: 209 -ADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAK 267
Query: 309 FRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGL 368
+ + +LN+ A +LK ++ A++ C + L ++P+N KAL+RR + + ++Q L
Sbjct: 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQAL 327
Query: 369 QDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 410
D ++A ++ P D+ I E+ V+++++ + EK YA+MF
Sbjct: 328 ADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMF 369
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 175 bits (443), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 103/214 (48%), Positives = 121/214 (56%), Gaps = 45/214 (21%)
Query: 8 EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRF 67
+GN +V+ D+SIG+ GR+ +ELF VP TAENFRALCTGE G G+ GK L +TGS F
Sbjct: 17 QGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFF 76
Query: 68 HRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITN 127
HRIIPQFMIQGGD T +GTGGESIYG F DENF Y H
Sbjct: 77 HRIIPQFMIQGGDFTRGDGTGGESIYGSKFRDENF------VYTH--------------- 115
Query: 128 FNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVV 187
D F LS+AN G PNTN SQFFIT PCP LDGK+VV
Sbjct: 116 ---------------DAPF--------LLSMANAG-PNTNGSQFFITTVPCPWLDGKHVV 151
Query: 188 FGCVRQGFGVAREVSYVEAENDKPLVTCTITNSG 221
FG V +G V + + ++N KP + IT SG
Sbjct: 152 FGKVLEGMEVVKSIEKCGSQNGKPTKSVCITASG 185
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 171 bits (434), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 99/211 (46%), Positives = 117/211 (55%), Gaps = 45/211 (21%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
VF D++IG + GR+V+EL+ +VPKTA NFRALCTGE G GK GK LHF GS+FHRIIP
Sbjct: 6 VFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIP 65
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
FMIQGGD T NGTGGESIYG F DENF
Sbjct: 66 NFMIQGGDFTRGNGTGGESIYGEKFPDENF------------------------------ 95
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
K KH G LS+AN G PNTN SQFF+ LDGK+VVFG V
Sbjct: 96 --------------KEKHTGPGVLSMANAG-PNTNGSQFFLCTVKTEWLDGKHVVFGRVV 140
Query: 193 QGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
+G V + V +++ KP+ C I + GQL
Sbjct: 141 EGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/211 (46%), Positives = 116/211 (54%), Gaps = 46/211 (21%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
VF D+SI GR++ ELF I P+T ENFRALCTGE G GK LH+ S
Sbjct: 6 VFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IGSRGKNLHYKNS------- 57
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
FHRIIPQFM QGGDITN NG+G
Sbjct: 58 -------------------------------------IFHRIIPQFMCQGGDITNGNGSG 80
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
GESIYG F DENF +KH G LS+AN G PNTN+SQFFITL PCP LDGK+VVFG V
Sbjct: 81 GESIYGRSFTDENFNMKHDQPGLLSMANAG-PNTNSSQFFITLVPCPWLDGKHVVFGKVI 139
Query: 193 QGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
+G V RE+ A++ + IT+ G+L
Sbjct: 140 EGMNVVREMEKEGAKSGYVKRSVVITDCGEL 170
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 97/210 (46%), Positives = 114/210 (54%), Gaps = 46/210 (21%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
VF D+SI GR++ ELF I P+T ENFRALCTGE G GK LH+ S
Sbjct: 6 VFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IGSRGKNLHYKNS------- 57
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
FHRIIPQFM QGGDITN NG+G
Sbjct: 58 -------------------------------------IFHRIIPQFMCQGGDITNGNGSG 80
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
GESIYG F DENF +KH G LS+AN G PNTN+SQF ITL PCP LDGK+VVFG V
Sbjct: 81 GESIYGRSFTDENFNMKHDQPGLLSMANAG-PNTNSSQFLITLVPCPWLDGKHVVFGKVI 139
Query: 193 QGFGVAREVSYVEAENDKPLVTCTITNSGQ 222
+G V RE+ A++ + IT+ G+
Sbjct: 140 EGMNVVREMEKEGAKSGYVKRSVVITDCGE 169
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 165 bits (417), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 119/218 (54%), Gaps = 42/218 (19%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
N VF D+SI + GR+V+EL+ VPKTAENFRALCTGE GKG+ GK LH+ S FHR
Sbjct: 7 NPKVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHR 66
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
+IP FMIQGGD T NGTGGESIYG F DE+F K
Sbjct: 67 VIPNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKA----------------------- 103
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
+H G LS+AN G PNTN SQFFI A P LDGK+VVFG
Sbjct: 104 ------------------GRHTGLGCLSMANAG-PNTNGSQFFICTAATPWLDGKHVVFG 144
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNE 227
V G V ++V + + + K +++ G+++ ++
Sbjct: 145 RVIDGLDVVKKVERLGSSSGKTRSRIVVSDCGEVAADK 182
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 152 bits (383), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 93/214 (43%), Positives = 113/214 (52%), Gaps = 53/214 (24%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
VF DV IG++ VGR+VI LF +VPKT ENF AL TGE G G + GS+F
Sbjct: 18 VFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYG-------YKGSKF----- 65
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
HR+I FMIQGGDIT +GTG
Sbjct: 66 ---------------------------------------HRVIKDFMIQGGDITTGDGTG 86
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
G SIYG F DENFKLKH G +S+AN G P+TN SQFFITL LDGK+VVFG V
Sbjct: 87 GVSIYGETFPDENFKLKHYGIGWVSMANAG-PDTNGSQFFITLTKPTWLDGKHVVFGKVI 145
Query: 193 QGFGVAREVSYVEAE-NDKPLVTCTITNSGQLSL 225
G V + + +D+PL C+I NSG++ +
Sbjct: 146 DGMTVVHSIELQATDGHDRPLTNCSIINSGKIDV 179
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 110/214 (51%), Gaps = 53/214 (24%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
VF DV IG++ VGR+VI LF ++VPKT ENF AL TGE G G G
Sbjct: 10 VFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKG--------------- 54
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
FHR+I FMIQGGD T +GTG
Sbjct: 55 ------------------------------------SIFHRVIKDFMIQGGDFTARDGTG 78
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
G SIYG F DENFKLKH G +S+AN G P+TN SQFFITL LDGK+VVFG V
Sbjct: 79 GMSIYGETFPDENFKLKHYGIGWVSMANAG-PDTNGSQFFITLTKPTWLDGKHVVFGKVL 137
Query: 193 QGFGVAREVSYVEAE-NDKPLVTCTITNSGQLSL 225
G V + + +D+PL CTI NSG++ +
Sbjct: 138 DGMTVVHSIELQATDGHDRPLTDCTIVNSGKIDV 171
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 107/211 (50%), Gaps = 52/211 (24%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
V+ DV + +GR+V +L+ IVPKTAENFRALCTGE G G G
Sbjct: 4 VYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSP------------- 50
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
FHR+IP FM+QGGD T NGTG
Sbjct: 51 --------------------------------------FHRVIPDFMLQGGDFTAGNGTG 72
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
G+SIYG F DENFK H G LS+AN G PNTN SQFFIT PCP LDGK+VVFG V
Sbjct: 73 GKSIYGGKFPDENFKKHHDRPGLLSMANAG-PNTNGSQFFITTVPCPWLDGKHVVFGEVV 131
Query: 193 QGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
G+ + ++V + + + + SG+L
Sbjct: 132 DGYDIVKKVESLGSPSGATKARIVVAKSGEL 162
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 114/215 (53%), Gaps = 48/215 (22%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
N +VF DVSIG ++VGRM IELF +VPKTAENFR CTGE+ K G + + GS FHR
Sbjct: 10 NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKD--GVPIGYKGSTFHR 67
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
+I FMIQGGD N +GTG SIY F DENFK
Sbjct: 68 VIKDFMIQGGDFVNGDGTGVASIYRGPFADENFK-------------------------- 101
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
L+H G LS+AN+G P+TN QFFIT + C LDGK+VVFG
Sbjct: 102 ------------------LRHSAPGLLSMANSG-PSTNGCQFFITCSKCDWLDGKHVVFG 142
Query: 190 CVRQGFGVAREVSYVE-AENDKPLVTCTITNSGQL 223
+ G V R++ V N+KP + I+ G++
Sbjct: 143 KIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 113/212 (53%), Gaps = 54/212 (25%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
V+ D++IG+E VGR+VI LF + VPKT ENF+ L +GE G G G
Sbjct: 8 VYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKG--------------- 52
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
FHR+I FMIQGGD TNF+GTG
Sbjct: 53 ------------------------------------SIFHRVIRNFMIQGGDFTNFDGTG 76
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
G+SIYG F+DEN K+KH F G +S+AN G PN+N SQFF+T AP P LDG++VVFG V
Sbjct: 77 GKSIYGTRFDDENLKIKH-FVGAVSMANAG-PNSNGSQFFVTTAPTPWLDGRHVVFGKVV 134
Query: 193 QGFGVAREVSYVEAE-NDKPLVTCTITNSGQL 223
+G V ++V + NDKP I + G L
Sbjct: 135 EGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 110/217 (50%), Gaps = 52/217 (23%)
Query: 8 EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRF 67
GN +V+LDV + +GR+V+EL +VPKTAENFRALCTGE G G G
Sbjct: 2 SGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGST-------- 53
Query: 68 HRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITN 127
FHR+IP FM Q GD TN
Sbjct: 54 -------------------------------------------FHRVIPSFMCQAGDFTN 70
Query: 128 FNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVV 187
NGTGG+SIYG F DENF LKH G LS+AN G PNTN SQFFI LDGK+VV
Sbjct: 71 HNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAG-PNTNGSQFFICTIKTDWLDGKHVV 129
Query: 188 FGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLS 224
FG V +G V +++ +++ + IT+ GQLS
Sbjct: 130 FGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 166
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 110/217 (50%), Gaps = 52/217 (23%)
Query: 8 EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRF 67
GN +V+LDV + +GR+V+EL +VPKTAENFRALCTGE G G G
Sbjct: 1 SGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGST-------- 52
Query: 68 HRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITN 127
FHR+IP FM Q GD TN
Sbjct: 53 -------------------------------------------FHRVIPSFMCQAGDFTN 69
Query: 128 FNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVV 187
NGTGG+SIYG F DENF LKH G LS+AN G PNTN SQFFI LDGK+VV
Sbjct: 70 HNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAG-PNTNGSQFFICTIKTDWLDGKHVV 128
Query: 188 FGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLS 224
FG V +G V +++ +++ + IT+ GQLS
Sbjct: 129 FGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 165
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 110/216 (50%), Gaps = 52/216 (24%)
Query: 9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFH 68
GN +V+LDV + +GR+V+EL +VPKTAENFRALCTGE G G G
Sbjct: 1 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGST--------- 51
Query: 69 RIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNF 128
FHR+IP FM Q GD TN
Sbjct: 52 ------------------------------------------FHRVIPSFMCQAGDFTNH 69
Query: 129 NGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVF 188
NGTGG+SIYG F DENF LKH G LS+AN G PNTN SQFFI LDGK+VVF
Sbjct: 70 NGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAG-PNTNGSQFFICTIKTDWLDGKHVVF 128
Query: 189 GCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLS 224
G V +G V +++ +++ + IT+ GQLS
Sbjct: 129 GHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 164
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 110/216 (50%), Gaps = 52/216 (24%)
Query: 9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFH 68
GN +V+LDV + +GR+V+EL +VPKTAENFRALCTGE G G G
Sbjct: 2 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGST--------- 52
Query: 69 RIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNF 128
FHR+IP FM Q GD TN
Sbjct: 53 ------------------------------------------FHRVIPSFMCQAGDFTNH 70
Query: 129 NGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVF 188
NGTGG+SIYG F DENF LKH G LS+AN G PNTN SQFFI LDGK+VVF
Sbjct: 71 NGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAG-PNTNGSQFFICTIKTDWLDGKHVVF 129
Query: 189 GCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLS 224
G V +G V +++ +++ + IT+ GQLS
Sbjct: 130 GHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 165
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 145 bits (365), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 111/213 (52%), Gaps = 47/213 (22%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGSRFHRII 71
VFLDV+I GR+V+EL+ I P+T NF LCTG G GK+ GK LH+ GS F
Sbjct: 9 VFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTF---- 64
Query: 72 PQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGT 131
HR+I FMIQGGD T +GT
Sbjct: 65 ----------------------------------------HRVIKNFMIQGGDFTKGDGT 84
Query: 132 GGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCV 191
GGESIYG F+DE F +KH +S+AN G PNTN SQFFIT P PHL+ +VVFG V
Sbjct: 85 GGESIYGGMFDDEEFVMKHDEPFVVSMANKG-PNTNGSQFFITTTPAPHLNNIHVVFGKV 143
Query: 192 RQGFGVAREVSYVEAEN-DKPLVTCTITNSGQL 223
G V ++ Y++ + ++PL I N G+L
Sbjct: 144 VSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 105/214 (49%), Gaps = 52/214 (24%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G G
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC---------- 51
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
FHRIIP FM QGGD T N
Sbjct: 52 -----------------------------------------FHRIIPGFMCQGGDFTRHN 70
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
GTGG+SIYG FEDENF LKH G LS+AN G PNTN SQFFI A LDGK+VVFG
Sbjct: 71 GTGGKSIYGEKFEDENFILKHTGPGILSMANAG-PNTNGSQFFICTAKTKWLDGKHVVFG 129
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
V++G + + + N K TI + GQL
Sbjct: 130 AVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 163
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 106/214 (49%), Gaps = 52/214 (24%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G G
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC---------- 51
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
FHRIIP FM QGGD T+ N
Sbjct: 52 -----------------------------------------FHRIIPGFMCQGGDFTHHN 70
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
GTGG+SIYG FEDENF LKH G LS+AN G PNTN SQFFI A LDGK+VVFG
Sbjct: 71 GTGGKSIYGEKFEDENFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFG 129
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
V++G + + + N K TI + GQL
Sbjct: 130 KVKEGMNIVEAMKRFGSRNGKTSKKITIADCGQL 163
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 105/214 (49%), Gaps = 52/214 (24%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G G
Sbjct: 22 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC---------- 71
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
FHRIIP FM QGGD T N
Sbjct: 72 -----------------------------------------FHRIIPGFMCQGGDFTRHN 90
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
GTGG+SIYG FEDENF LKH G LS+AN G PNTN SQFFI A LDGK+VVFG
Sbjct: 91 GTGGKSIYGEKFEDENFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFG 149
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
V++G + + + N K TI + GQL
Sbjct: 150 KVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 183
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 115/222 (51%), Gaps = 53/222 (23%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
V+ D+ IG+E +GR+VI LF VPKT +NF AL TGE G G
Sbjct: 15 VYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG------------------ 56
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
++D F HR+I FMIQGGD T +GTG
Sbjct: 57 ------------------------YKDSKF---------HRVIKDFMIQGGDFTRGDGTG 83
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
G+SIYG F DENFKLKH G +S+AN G +TN SQFFIT LDGK+VVFG V
Sbjct: 84 GKSIYGERFPDENFKLKHYGPGWVSMANAGK-DTNGSQFFITTVKTAWLDGKHVVFGKVL 142
Query: 193 QGFGVAREVSYVEAEN-DKPLVTCTITNSGQLSLNEDWGVAE 233
+G V R+V + + DKPL TI + G++ + + + +A+
Sbjct: 143 EGMEVVRKVETTKTDGRDKPLKDVTIADCGKIEVEKPFAIAK 184
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 105/214 (49%), Gaps = 52/214 (24%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G G
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC---------- 52
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
FHRIIP FM QGGD T N
Sbjct: 53 -----------------------------------------FHRIIPGFMCQGGDFTRHN 71
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
GTGG+SIYG FEDENF LKH G LS+AN G PNTN SQFFI A LDGK+VVFG
Sbjct: 72 GTGGKSIYGEKFEDENFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFG 130
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
V++G + + + N K TI + GQL
Sbjct: 131 KVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 115/222 (51%), Gaps = 53/222 (23%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
V+ D+ IG+E +GR+VI LF VPKT +NF AL TGE G G
Sbjct: 15 VYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG------------------ 56
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
++D F HR+I FMIQGGD T +GTG
Sbjct: 57 ------------------------YKDSKF---------HRVIKDFMIQGGDFTRGDGTG 83
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
G+SIYG F DENFKLKH G +S+AN G +TN SQFFIT LDGK+VVFG V
Sbjct: 84 GKSIYGERFPDENFKLKHYGPGWVSMANAGK-DTNGSQFFITTVKTAWLDGKHVVFGKVL 142
Query: 193 QGFGVAREVSYVEAEN-DKPLVTCTITNSGQLSLNEDWGVAE 233
+G V R+V + + DKPL TI + G++ + + + +A+
Sbjct: 143 EGMEVVRKVETTKTDGRDKPLKDVTIADCGKIEVEKPFAIAK 184
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 105/214 (49%), Gaps = 52/214 (24%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G G
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC---------- 52
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
FHRIIP FM QGGD T N
Sbjct: 53 -----------------------------------------FHRIIPGFMCQGGDFTRHN 71
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
GTGG+SIYG FEDENF LKH G LS+AN G PNTN SQFFI A LDGK+VVFG
Sbjct: 72 GTGGKSIYGEKFEDENFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFG 130
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
V++G + + + N K TI + GQL
Sbjct: 131 KVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 105/214 (49%), Gaps = 52/214 (24%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G G
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC---------- 52
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
FHRIIP FM QGGD T N
Sbjct: 53 -----------------------------------------FHRIIPGFMCQGGDFTRHN 71
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
GTGG+SIYG FEDENF LKH G LS+AN G PNTN SQFFI A LDGK+VVFG
Sbjct: 72 GTGGKSIYGEKFEDENFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFG 130
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
V++G + + + N K TI + GQL
Sbjct: 131 KVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 105/214 (49%), Gaps = 52/214 (24%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G G
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC---------- 51
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
FHRIIP FM QGGD T N
Sbjct: 52 -----------------------------------------FHRIIPGFMCQGGDFTRHN 70
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
GTGG+SIYG FEDENF LKH G LS+AN G PNTN SQFFI A LDGK+VVFG
Sbjct: 71 GTGGKSIYGEKFEDENFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFG 129
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
V++G + + + N K TI + GQL
Sbjct: 130 KVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 163
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 105/214 (49%), Gaps = 52/214 (24%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G G
Sbjct: 11 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC---------- 60
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
FHRIIP FM QGGD T N
Sbjct: 61 -----------------------------------------FHRIIPGFMCQGGDFTRHN 79
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
GTGG+SIYG FEDENF LKH G LS+AN G PNTN SQFFI A LDGK+VVFG
Sbjct: 80 GTGGKSIYGEKFEDENFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFG 138
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
V++G + + + N K TI + GQL
Sbjct: 139 KVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 172
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 105/214 (49%), Gaps = 52/214 (24%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G G
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC---------- 52
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
FHRIIP FM QGGD T N
Sbjct: 53 -----------------------------------------FHRIIPGFMCQGGDFTRHN 71
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
GTGG+SIYG FEDENF LKH G L++AN G PNTN SQFFI A LDGK+VVFG
Sbjct: 72 GTGGKSIYGEKFEDENFILKHTGPGILTMANAG-PNTNGSQFFICTAKTEWLDGKHVVFG 130
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
V++G + + + N K TI + GQL
Sbjct: 131 KVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 141 bits (356), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 105/214 (49%), Gaps = 52/214 (24%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G G
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC---------- 52
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
FH+IIP FM QGGD T N
Sbjct: 53 -----------------------------------------FHKIIPGFMCQGGDFTRHN 71
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
GTGG+SIYG FEDENF LKH G LS+AN G PNTN SQFFI A LDGK+VVFG
Sbjct: 72 GTGGKSIYGEKFEDENFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFG 130
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
V++G + + + N K TI + GQL
Sbjct: 131 KVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 141 bits (356), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 110/211 (52%), Gaps = 52/211 (24%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
VF D+ IG GR+V+EL IVP+TAENFRALCTGE G G
Sbjct: 13 VFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG------------------ 54
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
Y C FHR+IPQFM QGGD +GTG
Sbjct: 55 --------------------YHNC-------------CFHRVIPQFMCQGGDFVKGDGTG 81
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
G+SIYG F+DENF+L+H+ G LS+AN+G PNTN SQFFI C LDGK+VVFG V
Sbjct: 82 GKSIYGRKFDDENFQLRHEGFGVLSMANSG-PNTNGSQFFICTTKCDWLDGKHVVFGRVV 140
Query: 193 QGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
G V +++ V +++ K I+ G+L
Sbjct: 141 DGQNVVKKMESVGSKSGKVKEPVIISRCGEL 171
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 141 bits (355), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 106/214 (49%), Gaps = 52/214 (24%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G G
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC---------- 52
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
FHRIIP FM QGG+ T+ N
Sbjct: 53 -----------------------------------------FHRIIPGFMCQGGNFTHHN 71
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
GTGG+SIYG FEDENF LKH G LS+AN G PNTN SQFFI A LDGK+VVFG
Sbjct: 72 GTGGKSIYGEKFEDENFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFG 130
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
V++G + + + N K TI + GQL
Sbjct: 131 KVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 141 bits (355), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 107/213 (50%), Gaps = 47/213 (22%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGK-LGKALHFTGSRFHRII 71
F D++I + GR+V ELF + PKT ENFR LCTGE G GK K LH+
Sbjct: 12 CFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYK-------- 63
Query: 72 PQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGT 131
S FHR++ FM+QGGD + NG
Sbjct: 64 ------------------------------------SXLFHRVVKDFMVQGGDFSEGNGR 87
Query: 132 GGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCV 191
GGESIYG FEDE+F +KH E LS+AN G +TN SQFFIT P PHLDG +VVFG V
Sbjct: 88 GGESIYGGFFEDESFAVKHNKEFLLSMANRGK-DTNGSQFFITTKPTPHLDGHHVVFGQV 146
Query: 192 RQGFGVAREVSYVEAE-NDKPLVTCTITNSGQL 223
G V RE+ + + KP I + G+L
Sbjct: 147 ISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 141 bits (355), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 104/214 (48%), Gaps = 52/214 (24%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G G
Sbjct: 7 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC---------- 56
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
FHRIIP FM QGGD T N
Sbjct: 57 -----------------------------------------FHRIIPGFMCQGGDFTRHN 75
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
GTGG+SIYG FEDENF LKH G LS+AN G PNTN SQFFI A LDG +VVFG
Sbjct: 76 GTGGKSIYGEKFEDENFILKHTGPGILSMANAG-PNTNGSQFFICTAKTKWLDGXHVVFG 134
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
V++G + + + N K TI + GQL
Sbjct: 135 KVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 168
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 140 bits (354), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 104/214 (48%), Gaps = 52/214 (24%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G G
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC---------- 52
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
FHRIIP FM QGGD T N
Sbjct: 53 -----------------------------------------FHRIIPGFMCQGGDFTRHN 71
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
GTGG+SIYG FEDENF LKH G LS+AN G PNTN SQFFI A LDG +VVFG
Sbjct: 72 GTGGKSIYGEKFEDENFILKHTGPGILSMANAG-PNTNGSQFFICTAKTKWLDGXHVVFG 130
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
V++G + + + N K TI + GQL
Sbjct: 131 KVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 140 bits (354), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 104/214 (48%), Gaps = 52/214 (24%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G G
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC---------- 52
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
FHRIIP FM QGGD T N
Sbjct: 53 -----------------------------------------FHRIIPGFMCQGGDFTRHN 71
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
GTGG+SIYG FEDENF LKH G LS+AN G PNTN SQFFI A LDG +VVFG
Sbjct: 72 GTGGKSIYGEKFEDENFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGXHVVFG 130
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
V++G + + + N K TI + GQL
Sbjct: 131 KVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 106/214 (49%), Gaps = 52/214 (24%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G G
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC---------- 52
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
FHRIIP FM QGG+ T+ N
Sbjct: 53 -----------------------------------------FHRIIPGFMCQGGNFTHCN 71
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
GTGG+SIYG FEDENF LKH G LS+AN G PNTN SQFFI A LDGK+VVFG
Sbjct: 72 GTGGKSIYGEKFEDENFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFG 130
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
V++G + + + N K TI + GQL
Sbjct: 131 KVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 107/213 (50%), Gaps = 47/213 (22%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGK-LGKALHFTGSRFHRII 71
F D++I + GR+V ELF + PKT ENFR LCTGE G GK K LH+
Sbjct: 12 CFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYK-------- 63
Query: 72 PQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGT 131
S FHR++ FM+QGGD + NG
Sbjct: 64 ------------------------------------SCLFHRVVKDFMVQGGDFSEGNGR 87
Query: 132 GGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCV 191
GGESIYG FEDE+F +KH E LS+AN G +TN SQFFIT P PHLDG +VVFG V
Sbjct: 88 GGESIYGGFFEDESFAVKHNKEFLLSMANRGK-DTNGSQFFITTKPTPHLDGHHVVFGQV 146
Query: 192 RQGFGVAREVSYVEAE-NDKPLVTCTITNSGQL 223
G V RE+ + + KP I + G+L
Sbjct: 147 ISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 109/213 (51%), Gaps = 52/213 (24%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
N V++D+ IG + GR+ + L +VP TAENFR LCT E G G F GS
Sbjct: 11 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSS--- 60
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
FHRIIPQFM QGGD TN N
Sbjct: 61 -----------------------------------------FHRIIPQFMCQGGDFTNHN 79
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
GTGG+SIYG F+DENF LKH G LS+AN+G PNTN SQFF+T LDGK+VVFG
Sbjct: 80 GTGGKSIYGKKFDDENFILKHTGPGLLSMANSG-PNTNGSQFFLTCDKTDWLDGKHVVFG 138
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQ 222
V +G V R++ +++ KP I + G+
Sbjct: 139 EVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 171
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 108/210 (51%), Gaps = 52/210 (24%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
V++D+ IG + GR+ + L +VP TAENFR LCT E G G F GS
Sbjct: 6 VYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSS------ 52
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
FHRIIPQFM QGGD TN NGTG
Sbjct: 53 --------------------------------------FHRIIPQFMCQGGDFTNHNGTG 74
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
G+SIYG F+DENF LKH G LS+AN+G PNTN SQFF+T LDGK+VVFG V
Sbjct: 75 GKSIYGKKFDDENFILKHTGPGLLSMANSG-PNTNGSQFFLTCDKTDWLDGKHVVFGEVT 133
Query: 193 QGFGVAREVSYVEAENDKPLVTCTITNSGQ 222
+G V R++ +++ KP I + G+
Sbjct: 134 EGLDVLRQIEAQGSKDGKPKQKVIIADCGE 163
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 111/212 (52%), Gaps = 52/212 (24%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
VF ++SI ++ GR+V +L+ VPKTA+NFR L TG++G G
Sbjct: 5 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG------------------ 46
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
++D FHR+IPQFM+QGGD T NGTG
Sbjct: 47 ------------------------YKD---------SIFHRVIPQFMLQGGDFTRHNGTG 73
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
G+SIYG F DENF++KH G LS+AN G NTN SQFFIT P LDGK+VVFG V
Sbjct: 74 GKSIYGEKFADENFQVKHTKPGLLSMANAG-ANTNGSQFFITTVPTSWLDGKHVVFGEVI 132
Query: 193 QGFGVAREVSYVEAENDKPLVTCTITNSGQLS 224
+G + R+V + + K T IT+ G ++
Sbjct: 133 EGLDIVRKVEGKGSASGKTNATIKITDCGTVA 164
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 110/211 (52%), Gaps = 52/211 (24%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
VF ++SI ++ GR+V +L+ VPKTA+NFR L TG++G G
Sbjct: 6 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG------------------ 47
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
++D FHR+IPQFM+QGGD T NGTG
Sbjct: 48 ------------------------YKD---------SIFHRVIPQFMLQGGDFTRHNGTG 74
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
G+SIYG F DENF++KH G LS+AN G NTN SQFFIT P LDGK+VVFG V
Sbjct: 75 GKSIYGEKFADENFQVKHTKPGLLSMANAG-ANTNGSQFFITTVPTSWLDGKHVVFGEVI 133
Query: 193 QGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
+G + R+V + + K T IT+ G +
Sbjct: 134 EGLDIVRKVEGKGSASGKTNATIKITDCGTV 164
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 138 bits (347), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 88/214 (41%), Positives = 109/214 (50%), Gaps = 52/214 (24%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
N +VF DV E +GR+ +ELF +IVP+TAENFRALCT
Sbjct: 6 NPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCT--------------------- 44
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
GE +G FK + FHR+IP F+ QGGDIT +
Sbjct: 45 -------------------GEKGFG-------FK----NSIFHRVIPDFVCQGGDITKHD 74
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
GTGG+SIYG FEDENF +KH G LS+AN G NTNNSQF ITL HLD K+VVFG
Sbjct: 75 GTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQ-NTNNSQFVITLKKAEHLDFKHVVFG 133
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
V+ G +++ + TIT GQ+
Sbjct: 134 FVKDGMDTVKKIESFGSPKGSVCRRITITECGQI 167
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 138 bits (347), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 106/212 (50%), Gaps = 54/212 (25%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
V+ DV I E +GR+ I LF P T ENFR LCTGE
Sbjct: 14 VYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGE---------------------- 51
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
+G ++D FHR+I FMIQGGD TNF+GTG
Sbjct: 52 --------------------HGFGYKD---------SIFHRVIQNFMIQGGDFTNFDGTG 82
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
G+SIYG F DEN +KH F G LS+AN G PNTN SQFFIT AP P LDG++VVFG V
Sbjct: 83 GKSIYGEKFADENLNVKH-FVGALSMANAG-PNTNGSQFFITTAPTPWLDGRHVVFGKVL 140
Query: 193 QGFGVAREVSYVEA-ENDKPLVTCTITNSGQL 223
G V + + +D+P+ I SG+L
Sbjct: 141 DGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/222 (38%), Positives = 113/222 (50%), Gaps = 53/222 (23%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
V+ D+ IG+E VGR++ LF VPKT +NF AL TGE K + S+F
Sbjct: 18 VYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGE-------KGFGYKNSKF----- 65
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
HR+I FMIQGGD T +GTG
Sbjct: 66 ---------------------------------------HRVIKDFMIQGGDFTRGDGTG 86
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
G+SIYG F DENFKLKH G +S+AN G +TN SQFFIT LDGK+VVFG V
Sbjct: 87 GKSIYGERFPDENFKLKHYGPGWVSMANAGK-DTNGSQFFITTVKTAWLDGKHVVFGKVL 145
Query: 193 QGFGVAREVSYVEAEN-DKPLVTCTITNSGQLSLNEDWGVAE 233
+G V R+V + ++ DKPL I + G++ + + + +A+
Sbjct: 146 EGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEKPFAIAK 187
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 102/214 (47%), Gaps = 52/214 (24%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G G
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC---------- 51
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
FHRIIP F QGGD T N
Sbjct: 52 -----------------------------------------FHRIIPGFXCQGGDFTRHN 70
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
GTGG+SIYG FEDENF LKH G LS AN G PNTN SQFFI A LDGK+VVFG
Sbjct: 71 GTGGKSIYGEKFEDENFILKHTGPGILSXANAG-PNTNGSQFFICTAKTEWLDGKHVVFG 129
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
V++G + + N K TI + GQL
Sbjct: 130 KVKEGXNIVEAXERFGSRNGKTSKKITIADCGQL 163
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/222 (38%), Positives = 113/222 (50%), Gaps = 53/222 (23%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
V+ D+ IG+E VGR++ LF VPKT +NF AL TGE K + S+F
Sbjct: 8 VYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGE-------KGFGYKNSKF----- 55
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
HR+I FMIQGGD T +GTG
Sbjct: 56 ---------------------------------------HRVIKDFMIQGGDFTRGDGTG 76
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
G+SIYG F DENFKLKH G +S+AN G +TN SQFFIT LDGK+VVFG V
Sbjct: 77 GKSIYGERFPDENFKLKHYGPGWVSMANAGK-DTNGSQFFITTVKTAWLDGKHVVFGKVL 135
Query: 193 QGFGVAREVSYVEAEN-DKPLVTCTITNSGQLSLNEDWGVAE 233
+G V R+V + ++ DKPL I + G++ + + + +A+
Sbjct: 136 EGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEKPFAIAK 177
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 105/212 (49%), Gaps = 54/212 (25%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
V+ DV I E +GR+ I LF P T ENFR LCTGE
Sbjct: 14 VYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGE---------------------- 51
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
+G ++D FHR+I FMIQGGD TNF+GTG
Sbjct: 52 --------------------HGFGYKD---------SIFHRVIQNFMIQGGDFTNFDGTG 82
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
G+SIYG F DEN +KH F G LS+AN G PNTN SQFFIT AP P LDG +VVFG V
Sbjct: 83 GKSIYGEKFADENLNVKH-FVGALSMANAG-PNTNGSQFFITTAPTPWLDGAHVVFGKVL 140
Query: 193 QGFGVAREVSYVEA-ENDKPLVTCTITNSGQL 223
G V + + +D+P+ I SG+L
Sbjct: 141 DGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 105/213 (49%), Gaps = 47/213 (22%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGK-LGKALHFTGSRFHRII 71
F D++I + GR+V ELF + PKT ENFR LCTGE G GK K LH+ FHR++
Sbjct: 29 CFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVV 88
Query: 72 PQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGT 131
FM+QGGD + NG GGESIYG FEDE+F
Sbjct: 89 KDFMVQGGDFSEGNGRGGESIYGGFFEDESF----------------------------- 119
Query: 132 GGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCV 191
+KH LS+AN G +TN SQFFIT P PHLDG +VVFG V
Sbjct: 120 ---------------AVKHNAAFLLSMANRGK-DTNGSQFFITTKPTPHLDGHHVVFGQV 163
Query: 192 RQGFGVAREVSYVEAE-NDKPLVTCTITNSGQL 223
G V RE+ + + KP I + G+L
Sbjct: 164 ISGQEVVREIENQKTDAASKPFAEVRILSCGEL 196
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 105/213 (49%), Gaps = 52/213 (24%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
N V+ D+ IG + GR+ L +VP TAENFR LCT E G G F GS
Sbjct: 12 NPQVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFG-------FKGSS--- 61
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
FHRIIPQF QGGD TN N
Sbjct: 62 -----------------------------------------FHRIIPQFXCQGGDFTNHN 80
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
GTGG+SIYG F+DENF LKH G LS AN+G PNTN SQFF+T LDGK+VVFG
Sbjct: 81 GTGGKSIYGKKFDDENFILKHTGPGLLSXANSG-PNTNGSQFFLTCDKTDWLDGKHVVFG 139
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQ 222
V +G V R++ +++ KP I + G+
Sbjct: 140 EVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 172
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 100/209 (47%), Gaps = 52/209 (24%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
VF D++ +G + +LF +VPKTA NFRALCTGE G G G
Sbjct: 4 VFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAG--------------- 48
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
+FHR+IP FM+QGGD T NGTG
Sbjct: 49 ------------------------------------SHFHRVIPDFMLQGGDFTAGNGTG 72
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
G+SIYG F DENF+LKH G LS+AN G PNTN SQFFIT LDGK+VVFG V
Sbjct: 73 GKSIYGAKFADENFQLKHNKPGLLSMANAG-PNTNGSQFFITTVVTSWLDGKHVVFGEVI 131
Query: 193 QGFGVAREVSYVEAENDKPLVTCTITNSG 221
G V + + + + KP I G
Sbjct: 132 DGMNVVKAIEAEGSGSGKPRSRIEIAKCG 160
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 96/180 (53%), Gaps = 47/180 (26%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
N +VF+D+++G +G+ ELF++IVPKT+ENFR CTGEY
Sbjct: 59 NPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEY------------------ 100
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
+ N + + FHR+I +FMIQGGD N N
Sbjct: 101 ----------------------------KVNNLPVGYKNTIFHRVIKEFMIQGGDFINHN 132
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
G+G SIYG F+DENF +KH EG LS+AN+G PNTN QFFIT C LDGKNVVFG
Sbjct: 133 GSGSLSIYGEKFDDENFDIKHDKEGLLSMANSG-PNTNGCQFFITTKKCEWLDGKNVVFG 191
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 131 bits (329), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 106/212 (50%), Gaps = 47/212 (22%)
Query: 15 LDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGSRFHRIIPQ 73
D+ I E VGR++ +LF I PKT +NF LC+GE G GK GK L + GS F
Sbjct: 24 FDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTF------ 77
Query: 74 FMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGG 133
HR++ FMIQGGD + NG GG
Sbjct: 78 --------------------------------------HRVVKNFMIQGGDFSEGNGKGG 99
Query: 134 ESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQ 193
ESIYG F+DENF LKH LS+AN G +TN SQFFIT P PHLDG +VVFG V
Sbjct: 100 ESIYGGYFKDENFILKHDRAFLLSMANRGK-HTNGSQFFITTKPAPHLDGVHVVFGLVIS 158
Query: 194 GFGVAREVSYVEAE-NDKPLVTCTITNSGQLS 224
GF V ++ ++ + +P + + G L+
Sbjct: 159 GFEVIEQIENLKTDAASRPYADVRVIDCGVLA 190
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/220 (37%), Positives = 107/220 (48%), Gaps = 53/220 (24%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
V+ D+ IG + +GR+VI LF VPKTA NF L G+G + GS+F
Sbjct: 9 VYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG-------YPGSKF----- 56
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
HR+I FMIQGGD T +GTG
Sbjct: 57 ---------------------------------------HRVIADFMIQGGDFTRGDGTG 77
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
G SIYG F DENFKLKH G LS+AN G +TN SQFFIT P LDG++VVFG +
Sbjct: 78 GRSIYGEKFADENFKLKHYGAGWLSMANAGA-DTNGSQFFITTVKTPWLDGRHVVFGKIL 136
Query: 193 QGFGVAREVSYVEA-ENDKPLVTCTITNSGQLSLNEDWGV 231
+G V R++ E D+P I SG ++++ + V
Sbjct: 137 EGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIAVDTPFSV 176
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 103/205 (50%), Gaps = 52/205 (25%)
Query: 4 SICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFT 63
S+ KE + V+ DV EE +GR+V++L IVPKTA+NFR LC G+G G
Sbjct: 21 SMAKEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGST---- 76
Query: 64 GSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGG 123
FHRIIP FM+QGG
Sbjct: 77 -----------------------------------------------FHRIIPGFMVQGG 89
Query: 124 DITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDG 183
D T NGTGG SIYG F DENF+LKH EG LS+AN G +TN SQFFITL LD
Sbjct: 90 DYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCG-AHTNGSQFFITLGKTQWLDE 148
Query: 184 KNVVFGCVRQGFGVAREVSYVEAEN 208
K+VVFG V +G V +++ +E+
Sbjct: 149 KHVVFGEVVEGMDVVHKIAKYGSES 173
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/224 (39%), Positives = 104/224 (46%), Gaps = 69/224 (30%)
Query: 13 VFLDV-----SIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRF 67
VF DV E KVGR+V LF VPKTA+NFR LC G+G + S F
Sbjct: 5 VFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG-------YRESTF 57
Query: 68 HRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITN 127
HRIIP FMIQGGD T NGTGG SIYG F DEN
Sbjct: 58 HRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADEN-------------------------- 91
Query: 128 FNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVV 187
F KH +G LS+AN G PNTN SQFFIT A LDGK+VV
Sbjct: 92 ------------------FSRKHDKKGILSMANAG-PNTNGSQFFITTAVTSWLDGKHVV 132
Query: 188 FGCV--RQGFGVAREVSYVEA------ENDKPLVTCTITNSGQL 223
FG V + + V +E+ + + N +P I N G+L
Sbjct: 133 FGEVADEKSYSVVKEIEALGSSSGSVRSNTRP----KIVNCGEL 172
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 71/104 (68%), Gaps = 4/104 (3%)
Query: 111 FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE-NFKLKHKFEGQLSLANTGHPNTNNS 169
FHR+IP F+IQGGD T G GG+SIYG FEDE N +LKH G LS++N G PNTN+S
Sbjct: 80 FHRVIPNFVIQGGDPTG-TGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNG-PNTNSS 137
Query: 170 QFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVE-AENDKPL 212
QFFITLAP PHLDGK+ +F V + ++ V+ +KP+
Sbjct: 138 QFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPI 181
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 76/127 (59%), Gaps = 9/127 (7%)
Query: 100 ENFKLKVISQY-----FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFK-LKHKFE 153
+NF + I+ Y FHR+I FM+Q GD + +GTGGESI+G FEDE F L H
Sbjct: 31 QNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSG-DGTGGESIWGNEFEDEFFDHLNHSKP 89
Query: 154 GQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAEN-DKPL 212
+S+AN G PNTN SQFFIT PCP LD K+ VFG V QG + ++ V + DKPL
Sbjct: 90 FMVSMANCG-PNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPL 148
Query: 213 VTCTITN 219
I N
Sbjct: 149 EDIKILN 155
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 91/193 (47%), Gaps = 56/193 (29%)
Query: 21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGD 80
E +G +V+EL+ PKT +NF +L + ++ G++FHRII FMIQGGD
Sbjct: 17 ETSMGIIVLELYWKHAPKTCKNF----------AELARRGYYNGTKFHRIIKDFMIQGGD 66
Query: 81 ITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPC 140
T G GG SIYG FEDE H
Sbjct: 67 PTG-TGRGGASIYGKQFEDE----------LHP--------------------------- 88
Query: 141 FEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVARE 200
LK G L++AN G P+TN SQFF+TLAP LDGK+ +FG V QG G+
Sbjct: 89 ------DLKFTGAGILAMANAG-PDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNR 141
Query: 201 VSYVEAEN-DKPL 212
V VE + D+P+
Sbjct: 142 VGMVETNSQDRPV 154
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 91/193 (47%), Gaps = 56/193 (29%)
Query: 21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGD 80
E +G +V+EL+ PKT +NF +L + ++ G++FHRII FMIQGGD
Sbjct: 17 ETSMGIIVLELYWKHAPKTCKNF----------AELARRGYYNGTKFHRIIKDFMIQGGD 66
Query: 81 ITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPC 140
T G GG SIYG FEDE H
Sbjct: 67 PTG-TGRGGASIYGKQFEDE----------LHP--------------------------- 88
Query: 141 FEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVARE 200
LK G L++AN G P+TN SQFF+TLAP LDGK+ +FG V QG G+
Sbjct: 89 ------DLKFTGAGILAMANAG-PDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNR 141
Query: 201 VSYVEAEN-DKPL 212
V VE + D+P+
Sbjct: 142 VGMVETNSQDRPV 154
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 93/201 (46%), Gaps = 56/201 (27%)
Query: 21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGD 80
E +G +V+EL+ PKT +NF +L + ++ G++FHRII FMIQGGD
Sbjct: 17 ETSMGIIVLELYWKHAPKTCKNF----------AELARRGYYNGTKFHRIIKDFMIQGGD 66
Query: 81 ITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPC 140
T G GG SIYG FEDE H
Sbjct: 67 PTG-TGRGGASIYGKQFEDE----------LHP--------------------------- 88
Query: 141 FEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVARE 200
LK G L++AN G P+TN SQFF+TLAP LDGK+ +FG V QG G+
Sbjct: 89 ------DLKFTGAGILAMANAG-PDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNR 141
Query: 201 VSYVEAEN-DKPLVTCTITNS 220
V VE + D+P+ I +
Sbjct: 142 VGMVETNSQDRPVDDVKIIKA 162
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 91/166 (54%), Gaps = 6/166 (3%)
Query: 246 EDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQ 305
E W+ N E +L Q +K G YFK + A +YKK V +++ Y S S +
Sbjct: 134 ESWEMNSEE-KLEQS----TIVKERGTVYFKEGKYKQALLQYKKIVSWLE-YESSFSNEE 187
Query: 306 QKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFE 365
+ ++ A+ LN+A LK +A+ AI C+ L ++ NN K LFRRG A +++N+FE
Sbjct: 188 AQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFE 247
Query: 366 QGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ 411
D+++ L L PN++ ++A ++++R L EK YA MF+
Sbjct: 248 LARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 69/112 (61%), Gaps = 5/112 (4%)
Query: 111 FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE-NFKLKHKFEGQLSLANTGHPNTNNS 169
FHRII FMIQ GD T G GGESI+G FEDE + L+H LS+AN G NTN S
Sbjct: 63 FHRIIKGFMIQTGDPTG-TGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGS-NTNGS 120
Query: 170 QFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEA--ENDKPLVTCTITN 219
QFFIT+ P P LD K+ VFG V +G V + +S V+ + DKP +I N
Sbjct: 121 QFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN 172
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 6/166 (3%)
Query: 246 EDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQ 305
E W+ N E +L Q +K G YFK + A +YKK V +++ Y S S +
Sbjct: 134 ESWEXNSEE-KLEQS----TIVKERGTVYFKEGKYKQALLQYKKIVSWLE-YESSFSNEE 187
Query: 306 QKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFE 365
+ ++ A+ LN+A LK +A+ AI C+ L ++ NN K L RRG A +++N+FE
Sbjct: 188 AQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFE 247
Query: 366 QGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ 411
D+++ L L PN++ ++A ++++R L EK YA MF+
Sbjct: 248 LARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 78/145 (53%), Gaps = 1/145 (0%)
Query: 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 326
+K G YFK + A +Y K V +++ S+ + K S+ AA LN+A LK
Sbjct: 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEM-EYGLSEKESKASESFLLAAFLNLAMCYLK 329
Query: 327 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 386
+ Y +A+ CD L ++ N K L+RRG AQ+ MN FE D+E+ L++ P ++
Sbjct: 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 389
Query: 387 EIAFVRKQMRHHLNLEKMTYARMFQ 411
+I+ +K+ + H ++ YA MF+
Sbjct: 390 QISMCQKKAKEHNERDRRIYANMFK 414
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 1/145 (0%)
Query: 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 326
+K G YFK + A +Y K V +++ S+ + K S+ AA LN+A LK
Sbjct: 271 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEM-EYGLSEKESKASESFLLAAFLNLAMCYLK 329
Query: 327 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 386
+ Y +A+ CD L ++ N K L+RRG AQ+ MN FE D+E+ L++ P ++
Sbjct: 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 389
Query: 387 EIAFVRKQMRHHLNLEKMTYARMFQ 411
+I +K+ + H ++ TYA MF+
Sbjct: 390 QIFMCQKKAKEHNERDRRTYANMFK 414
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 76/178 (42%), Gaps = 55/178 (30%)
Query: 24 VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITN 83
VG + IE+F PKT ENF ALC Y + G FHR I FM+Q GD T
Sbjct: 15 VGDIKIEVFCERTPKTCENFLALCASNY----------YNGCIFHRNIKGFMVQTGDPTG 64
Query: 84 FNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFED 143
G GG SI+G FEDE S+Y
Sbjct: 65 -TGRGGNSIWGKKFEDE------YSEY--------------------------------- 84
Query: 144 ENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREV 201
LKH G +S+AN G PNTN SQFFIT PHLD K VFG V G E+
Sbjct: 85 ----LKHNVRGVVSMANNG-PNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDEL 137
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 76/178 (42%), Gaps = 55/178 (30%)
Query: 24 VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITN 83
VG + IE+F PKT ENF ALC Y + G FHR I FM+Q GD T
Sbjct: 9 VGDIKIEVFCERTPKTCENFLALCASNY----------YNGCIFHRNIKGFMVQTGDPTG 58
Query: 84 FNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFED 143
G GG SI+G FEDE S+Y
Sbjct: 59 -TGRGGNSIWGKKFEDE------YSEY--------------------------------- 78
Query: 144 ENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREV 201
LKH G +S+AN G PNTN SQFFIT PHLD K VFG V G E+
Sbjct: 79 ----LKHNVRGVVSMANNG-PNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDEL 131
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 59/89 (66%), Gaps = 5/89 (5%)
Query: 111 FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENF-KLKHKFEGQLSLANTG---HPNT 166
FH+ I F+IQGGD T G GGESIYG F+DE + +LK+ G LS+A+ G PNT
Sbjct: 58 FHKNIKGFIIQGGDPTG-TGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNT 116
Query: 167 NNSQFFITLAPCPHLDGKNVVFGCVRQGF 195
N SQFFIT + P L+G+ V+FG + GF
Sbjct: 117 NGSQFFITYSSLPQLNGEYVIFGKLIDGF 145
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 54/82 (65%), Gaps = 3/82 (3%)
Query: 111 FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE-NFKLKHKFEGQLSLANTGHPNTNNS 169
FHR++P F++QGGD T G+GGESIYG F+DE + +L+ G +++AN G + N S
Sbjct: 66 FHRVVPGFIVQGGDPTG-TGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGS-HDNGS 123
Query: 170 QFFITLAPCPHLDGKNVVFGCV 191
QFF TL L+ K+ +FG V
Sbjct: 124 QFFFTLGRADELNNKHTIFGKV 145
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 3/146 (2%)
Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYI--KWYNQSQSKTQQKHFRSYYTAALLNMAAVQL 325
K GN FK ++ +A ++Y+ A+ Y+ + Q K Q + LN+AA +
Sbjct: 183 KMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMAL-AVKNPCHLNIAACLI 241
Query: 326 KFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL 385
K K Y AI C+ +L E N KALFRRG+A+ + + D+ +A P+D+ I
Sbjct: 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIR 301
Query: 386 KEIAFVRKQMRHHLNLEKMTYARMFQ 411
+E+ + +Q + +K Y +F+
Sbjct: 302 RELRALAEQEKALYQKQKEMYKGIFK 327
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 85/189 (44%), Gaps = 57/189 (30%)
Query: 25 GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNF 84
G + +EL + PKT ENF LC Y + G+ FHR I F+IQGGD T
Sbjct: 29 GDLNLELHCDLTPKTCENFIRLCKKHY----------YDGTIFHRSIRNFVIQGGDPTG- 77
Query: 85 NGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE 144
GTGGES +G F+DE + P
Sbjct: 78 TGTGGESYWGKPFKDE------------------------------------FRP----- 96
Query: 145 NFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYV 204
L H G LS+AN+G PN+N SQFFIT C +LD K+ +FG V GF V + V
Sbjct: 97 --NLSHTGRGILSMANSG-PNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENV 153
Query: 205 EAE--NDKP 211
E++ D+P
Sbjct: 154 ESDPKTDRP 162
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 73/147 (49%)
Query: 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 326
IK GNE+FK N +++A KYK+A+ + + + ++ + LN+A K
Sbjct: 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK 100
Query: 327 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 386
K Y +AI+ +L ++ NNVKAL++ G A + E+ ++ +A L PN+ I
Sbjct: 101 NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRN 160
Query: 387 EIAFVRKQMRHHLNLEKMTYARMFQNG 413
+++ +K+T+ MF G
Sbjct: 161 SYELCVNKLKEARKKDKLTFGGMFDKG 187
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 81/183 (44%), Gaps = 45/183 (24%)
Query: 25 GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNF 84
G + IEL + P+ ++F LC +Y F + FHR I FMIQGG
Sbjct: 16 GSLNIELHADMAPRACDSFLRLCAVKY----------FDDTIFHRCIRNFMIQGGR---- 61
Query: 85 NGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE 144
+ P K K + Q P+ I+ F G G FEDE
Sbjct: 62 -----AELRQPS------KKKEVQQS-----PR------SISGFPG-------GAPFEDE 92
Query: 145 -NFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSY 203
+ +L H+ G LS+AN G ++N S+FFIT C HL+ K+ +FG V G V R+
Sbjct: 93 FDNRLVHQGIGVLSMANDG-KHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEK 151
Query: 204 VEA 206
+E
Sbjct: 152 LET 154
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 69/167 (41%), Gaps = 43/167 (25%)
Query: 25 GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNF 84
G + I LF + PKT NF L G D +
Sbjct: 33 GDIKIALFGNHAPKTVANFVGLAQGTK----------------------------DYSTQ 64
Query: 85 NGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE 144
N +GG S GP ++ FHR+I FMIQGGD T G + F E
Sbjct: 65 NASGGPS--GPFYD---------GAVFHRVIQGFMIQGGDPTGTGRGGPGYKFADEFHPE 113
Query: 145 NFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCV 191
L+ L++AN G P TN SQFFIT+ PHL+ ++ +FG V
Sbjct: 114 ---LQFDKPYLLAMANAG-PGTNGSQFFITVGKTPHLNRRHTIFGEV 156
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 16/134 (11%)
Query: 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMA 321
+ KN GN Y+K Q Y+KA+ Y + + +A N+
Sbjct: 7 NSAEAWKNLGNAYYK-------QGDYQKAIEYYQ---------KALELDPNNASAWYNLG 50
Query: 322 AVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
K Y++AI L ++PNN KA +RRG A ++++ ++DY++AL+L PN+
Sbjct: 51 NAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN 110
Query: 382 QQILKEIAFVRKQM 395
+ + + +++
Sbjct: 111 AKAKQNLGNAKQKQ 124
>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin
Length = 234
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEY------GKGKLGKALH----F 62
V++D+ + E +GR+ I+LF+ P ENF L G+ G GK H +
Sbjct: 17 VYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTY 76
Query: 63 TGSRFHRIIPQFMIQGGDITNFNGTGGESIY-----GPCFED 99
G +FH ++ I GDI N NG+ ++Y P F D
Sbjct: 77 EGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGD 118
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 15/100 (15%)
Query: 107 ISQYFHRIIPQFMIQGGDITNFNGTGGESIY-GPCFEDENF-KLKHKFEGQLSLANTGHP 164
++ FHR++ F++QGGD T G ++ + G F+ E +LK ++ G + +AN G
Sbjct: 59 VNTIFHRVVKDFIVQGGDPTGTGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRS 118
Query: 165 N-------------TNNSQFFITLAPCPHLDGKNVVFGCV 191
+ TN +QFFITLA L+ +FG V
Sbjct: 119 SKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKV 158
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 49.3 bits (116), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 18/117 (15%)
Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALL-NMAAVQLK 326
KN GNEYFK A R Y +AV+ R A L N AA K
Sbjct: 17 KNKGNEYFKKGDYPTAMRHYNEAVK-----------------RDPENAILYSNRAACLTK 59
Query: 327 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ 383
++RA++ CD + ++ +K R+ V+M + + + YE AL + P++++
Sbjct: 60 LMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEE 116
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 16/121 (13%)
Query: 111 FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQ 170
FHR+IP FMIQGG F + P ++E G +++A T ++ SQ
Sbjct: 46 FHRVIPGFMIQGG---GFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQ 102
Query: 171 FFITLAPCPHLDGKN-----VVFGCVRQGFGVAREVSYVEAEN--------DKPLVTCTI 217
FFI +A LD VFG V +G VA ++S V + KP+V +
Sbjct: 103 FFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSA 162
Query: 218 T 218
T
Sbjct: 163 T 163
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 10/58 (17%)
Query: 25 GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDIT 82
G + +EL K P + +NF + + + FHR+IP FMIQGG T
Sbjct: 14 GNIELELDKQKAPVSVQNFVDYVNSGF----------YNNTTFHRVIPGFMIQGGGFT 61
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 111 FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQ 170
FHR+IP FMIQGG F + P ++E G +++A T ++ SQ
Sbjct: 46 FHRVIPGFMIQGG---GFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQ 102
Query: 171 FFITLAPCPHLDGKN-----VVFGCVRQGFGVAREVSYVEAENDKP 211
FFI +A LD VFG V +G VA ++S V + P
Sbjct: 103 FFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGP 148
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 10/58 (17%)
Query: 25 GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDIT 82
G + +EL K P + +NF + + + FHR+IP FMIQGG T
Sbjct: 14 GNIELELDKQKAPVSVQNFVDYVNSGF----------YNNTTFHRVIPGFMIQGGGFT 61
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 333 AINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 384
AI +C ++L MEP+NV AL R A + +++ +QDYE A + NDQQI
Sbjct: 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365
>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide
pdb|4APO|B Chain B, Aip Tpr Domain In Complex With Human Tomm20 Peptide
Length = 165
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 72/165 (43%), Gaps = 3/165 (1%)
Query: 251 NPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIK--WYNQSQSKTQQKH 308
+P + + + I GN ++ + +A KY A+ +K + +
Sbjct: 1 DPWAMTAEEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQ 60
Query: 309 FRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGL 368
T LLN +L + Y ++ C IL +NVKA F+RG+A ++ N ++
Sbjct: 61 LDQQITPLLLNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQ 120
Query: 369 QDYEQALDLLPNDQQIL-KEIAFVRKQMRHHLNLEKMTYARMFQN 412
D+ + L+L P ++ +E+ + ++R +K + +F +
Sbjct: 121 ADFAKVLELDPALAPVVSRELQALEARIRQKDEEDKARFRGIFSH 165
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 333 AINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 384
AI +C ++L EP+NV AL R A + +++ +QDYE A + NDQQI
Sbjct: 291 AIRICSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYEAAQEHNENDQQI 342
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 333 AINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 384
AI +C ++L EP+NV AL R A + +++ +QDYE A + NDQQI
Sbjct: 314 AIRVCSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYETAQEHNENDQQI 365
>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide
pdb|4AIF|B Chain B, Aip Tpr Domain In Complex With Human Hsp90 Peptide
Length = 144
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIK--WYNQSQSKTQQKHFRSYYTAALLNM 320
+ I GN ++ + +A KY A+ +K + + T LLN
Sbjct: 7 AVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNY 66
Query: 321 AAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP 379
+L + Y ++ C IL +NVKA F+RG+A ++ N ++ D+ + L+L P
Sbjct: 67 CQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDP 125
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 44.7 bits (104), Expect = 9e-05, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMA 321
D+ +KN GNE F+ A + Y +A+ K K + Y N A
Sbjct: 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAI-----------KRNPKDAKLYS-----NRA 57
Query: 322 AVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 377
A K ++ A+ C++ + +EP +K R+ A +M ++ + + Y++ALDL
Sbjct: 58 ACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
NS ++ L + Q Y +A+ Y Q + + ++Y N+ K
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYY----QKALELDPNNAEAWY-----NLGNAYYKQG 57
Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 388
Y AI L ++PNN +A + G A ++++ ++ Y++AL+L PN+ + + +
Sbjct: 58 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 117
Query: 389 AFVRKQ 394
+++
Sbjct: 118 GNAKQK 123
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 13/128 (10%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSY--YTAALLNMAAVQLK 326
NS ++ L + Q Y +A+ Y QK Y A N+ K
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYY-----------QKALELYPNNAEAWYNLGNAYYK 55
Query: 327 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 386
Y AI L + PNN +A + G A ++++ ++ Y++AL+L PN+ + +
Sbjct: 56 QGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQ 115
Query: 387 EIAFVRKQ 394
+ +++
Sbjct: 116 NLGNAKQK 123
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 23/151 (15%)
Query: 242 PPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQ 301
P PE + P + Q+ + GNE FK A Y +A+ + Q Q
Sbjct: 13 PGTPEPRPATPGASSVEQL-------RKEGNELFKCGDYGGALAAYTQAL-GLDATPQDQ 64
Query: 302 SKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSM 361
+ + N AA LK + Y +A + + +VKAL+RR +A +
Sbjct: 65 AVLHR------------NRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKL 112
Query: 362 NNFEQGLQDYEQALDLLPND---QQILKEIA 389
+Q + D ++ + L P + Q+ L+ I+
Sbjct: 113 GRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 111 FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQ 170
FHR+I FMIQGG G +S P + N L +K + +++A T P++ ++Q
Sbjct: 41 FHRVIDGFMIQGGGFE--PGMKQKSTRAPIKNEANNGLSNK-KYTIAMARTPDPHSASAQ 97
Query: 171 FFITL---------APCPHLDGKNVVFGCVRQGFGVAREVSYV 204
FFI + AP H G VFG V +G V + V
Sbjct: 98 FFINVKDNAFLDHTAPTAHGWGY-AVFGEVVEGTDVVDRIKSV 139
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 25 GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGG 79
G + ++LF P+TA NF K H+ G+ FHR+I FMIQGG
Sbjct: 9 GTITLKLFADKAPETAANFEQYV----------KDGHYDGTIFHRVIDGFMIQGG 53
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 314 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ 373
A +L + VQ++ Y A+ L + P N FR G A ++ F++ + ++
Sbjct: 78 VATVLGLTYVQVQ--KYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFKI 135
Query: 374 ALDLLPNDQQILKEIAFVRKQMRHH 398
AL L PN+ ++ + IAF +QM H
Sbjct: 136 ALGLRPNEGKVHRAIAFSYEQMGRH 160
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 18/129 (13%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYI-----KWYNQSQSKTQQKHFR---SYYTAAL--- 317
N GN Y+K +A Y+KA+ WYN + +Q + YY AL
Sbjct: 6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65
Query: 318 -------LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD 370
N+ K Y AI L ++P + +A + G A ++++ ++
Sbjct: 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY 125
Query: 371 YEQALDLLP 379
Y++AL+L P
Sbjct: 126 YQKALELDP 134
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 314 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ 373
A +L + VQ++ Y A+ L + P N FR G A ++ F++ + ++
Sbjct: 78 VATVLGLTYVQVQ--KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI 135
Query: 374 ALDLLPNDQQILKEIAFVRKQMRHH 398
AL L PN+ ++ + IAF +QM H
Sbjct: 136 ALGLRPNEGKVHRAIAFSYEQMGRH 160
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 40/79 (50%)
Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 375
A N+ K Y AI L ++PNN +A + G A ++++ ++ Y++AL
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 376 DLLPNDQQILKEIAFVRKQ 394
+L PN+ + + + +++
Sbjct: 71 ELDPNNAEAKQNLGNAKQK 89
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 314 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ 373
A +L + VQ++ Y A+ L + P N FR G A ++ F++ + ++
Sbjct: 78 VATVLGLTYVQVQ--KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI 135
Query: 374 ALDLLPNDQQILKEIAFVRKQMRHH 398
AL L PN+ ++ + IAF +QM H
Sbjct: 136 ALGLRPNEGKVHRAIAFSYEQMGRH 160
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 314 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ 373
A +L + VQ++ Y A+ L + P N FR G A ++ F++ + ++
Sbjct: 78 VATVLGLTYVQVQ--KYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFKI 135
Query: 374 ALDLLPNDQQILKEIAFVRKQMRHH 398
AL L PN+ ++ + IA+ +QM H
Sbjct: 136 ALGLRPNEGKVHRAIAYSYEQMGSH 160
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 34/157 (21%)
Query: 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 326
+K N+YFK +A + Y +A+ N S + YY N + L+
Sbjct: 9 LKTQANDYFKAKDYENAIKFYSQAIEL----NPSNA--------IYYG----NRSLAYLR 52
Query: 327 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ---- 382
+ Y A+ + ++ +K +RR + +++ F L+DYE + + P+D+
Sbjct: 53 TECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKM 112
Query: 383 ------QILKEIAFVR--------KQMRHHLNLEKMT 405
+I+K+ AF R + + L++E MT
Sbjct: 113 KYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMT 149
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 16/130 (12%)
Query: 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 326
+K GNE K+ A Y KA+ N AA K
Sbjct: 15 LKTEGNEQMKVENFEAAVHFYGKAI----------------ELNPANAVYFCNRAAAYSK 58
Query: 327 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 386
Y A+ C+ + ++P KA R G A S+N + + Y++AL+L P+++
Sbjct: 59 LGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKS 118
Query: 387 EIAFVRKQMR 396
+ ++R
Sbjct: 119 NLKIAELKLR 128
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 25 GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGG 79
G + +EL + PKT ENF K H+ G+ FHR+I FMIQGG
Sbjct: 13 GVIKLELDEAKAPKTVENFLNYV----------KKGHYDGTIFHRVINGFMIQGG 57
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 13/105 (12%)
Query: 111 FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQ 170
FHR+I FMIQGG G + P + N LK+ +++A T P++ +Q
Sbjct: 45 FHRVINGFMIQGGGFE--PGLKQKPTDAPIANEANNGLKNDTY-TIAMARTNDPHSATAQ 101
Query: 171 FFITL---------APCPHLDGKNVVFGCVRQGFGVAREVSYVEA 206
FFI + +P P G VFG V +G + ++ V+
Sbjct: 102 FFINVNDNEFLNHSSPTPQGWGY-AVFGKVVEGQDIVDKIKAVKT 145
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 34/157 (21%)
Query: 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 326
+K N+YFK +A IK+Y+Q+ YY N + L+
Sbjct: 16 LKTQANDYFKAKDYENA----------IKFYSQAIELNPSNAI--YYG----NRSLAYLR 59
Query: 327 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ---- 382
+ Y A+ + ++ +K +RR + +++ F L+DYE + + P+D+
Sbjct: 60 TECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKM 119
Query: 383 ------QILKEIAFVR--------KQMRHHLNLEKMT 405
+I+K+ AF R + + L++E MT
Sbjct: 120 KYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMT 156
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 16/116 (13%)
Query: 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 326
+K N+YFK +A IK+Y+Q+ YY N + L+
Sbjct: 24 LKTQANDYFKAKDYENA----------IKFYSQAIELNPSNAI--YYG----NRSLAYLR 67
Query: 327 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ 382
+ Y A+N + ++ +K +RR + +++ F L+DYE + + P+D+
Sbjct: 68 TECYGYALNDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 123
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 319 NMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL 378
NM+ L A ++L E N KALFRR +A+++ ++ +D + L
Sbjct: 68 NMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127
Query: 379 PNDQQIL-KEIAFVRKQMRHHLNLEKMTYARMFQ 411
P ++ +E+ V ++ ++TY++MFQ
Sbjct: 128 PAAASVVAREMKIVTERRAEKKADSRVTYSKMFQ 161
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 25 GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGG 79
G +VI+ F P+T +NF C + + + FHR+I FMIQGG
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYCREGF----------YNNTIFHRVINGFMIQGG 53
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 35.0 bits (79), Expect = 0.084, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 16/104 (15%)
Query: 271 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY 330
G EYF + +A + Y + + K + R Y N AA K ++
Sbjct: 11 GKEYFTKSDWPNAVKAYTEMI-----------KRAPEDARGYS-----NRAAALAKLMSF 54
Query: 331 KRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQA 374
AI C+ + +PN V+A R+ AQ+++ + L+ + A
Sbjct: 55 PEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 98
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli
(Eppib)
Length = 164
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 25 GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGG 79
G +VI+ F P+T +NF C + + + FHR+I FMIQGG
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYCREGF----------YNNTIFHRVINGFMIQGG 53
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 17/105 (16%)
Query: 266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQL 325
+K+ GN++F+ +KY A++Y W + K +Y+ N++A +
Sbjct: 8 ALKDKGNQFFR-------NKKYDDAIKYYNW------ALELKEDPVFYS----NLSACYV 50
Query: 326 KFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD 370
K+ + + L ++P+ K L RR A + F + D
Sbjct: 51 SVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFD 95
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 335 NLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP 379
N D L ++ NN + RG+ + N++Q +D+++A +L P
Sbjct: 291 NYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 319 NMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ--DYEQALD 376
N AA K ++ AI C+ + +PN V+A R+ AQ+++ + L+ D + D
Sbjct: 178 NRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237
Query: 377 LLPNDQQILKEI 388
N+ +EI
Sbjct: 238 AEVNNGSSAREI 249
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 21/124 (16%)
Query: 252 PETVQL-----NQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQ 306
P+ QL +Q + +KN GN +F ++A + Y+ A+ + +
Sbjct: 8 PDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAI---------ELDPNE 58
Query: 307 KHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQ 366
F S N++A + ++ I L ++P++ KAL RR A S+ NF
Sbjct: 59 PVFYS-------NISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTD 111
Query: 367 GLQD 370
+ D
Sbjct: 112 AMFD 115
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 21/124 (16%)
Query: 252 PETVQL-----NQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQ 306
P+ QL +Q + +KN GN +F ++A + Y+ A+ + +
Sbjct: 4 PDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAI---------ELDPNE 54
Query: 307 KHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQ 366
F S N++A + ++ I L ++P++ KAL RR A S+ NF
Sbjct: 55 PVFYS-------NISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTD 107
Query: 367 GLQD 370
+ D
Sbjct: 108 AMFD 111
>pdb|2VD5|A Chain A, Structure Of Human Myotonic Dystrophy Protein Kinase In
Complex With The Bisindoylmaleide Inhibitor Bim Viii
pdb|2VD5|B Chain B, Structure Of Human Myotonic Dystrophy Protein Kinase In
Complex With The Bisindoylmaleide Inhibitor Bim Viii
Length = 412
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 228 DWGVAENDGSQDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNSGNE 273
DW DG +D PPF D++ +T + +ED + + + G E
Sbjct: 335 DW-----DGLRDSVPPFTPDFEGATDTCNFDLVEDGLTAMVSGGGE 375
>pdb|1ZU2|A Chain A, Solution Nmr Structure Of The Plant Tom20 Mitochondrial
Import Receptor From Arabidopsis Thaliana
Length = 158
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 11/79 (13%)
Query: 331 KRAINLCDDILLMEPNNVKALFRRGRAQVSM-----------NNFEQGLQDYEQALDLLP 379
+ AI ++ LL++P +A++ G A S +NF+ Q ++QA+D P
Sbjct: 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122
Query: 380 NDQQILKEIAFVRKQMRHH 398
++ LK + K + H
Sbjct: 123 DNTHYLKSLEMTAKAPQLH 141
>pdb|3SWK|A Chain A, Crystal Structure Of Vimentin Coil1b Fragment
pdb|3SWK|B Chain B, Crystal Structure Of Vimentin Coil1b Fragment
Length = 86
Score = 28.9 bits (63), Expect = 5.0, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 335 NLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQA-LDLLPNDQQILKEIAFVRK 393
NL +DI+ + + + +R A+ ++ +F Q + + A LDL + + +EIAF++K
Sbjct: 25 NLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 84
>pdb|4FVM|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha
pdb|4FXD|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha Bound To
Dna/rna
pdb|4FXD|B Chain B, Crystal Structure Of Yeast Dna Polymerase Alpha Bound To
Dna/rna
Length = 910
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 175 LAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLN 226
+ PC LD K F +R A EVS + +N P T T+ N LSL+
Sbjct: 144 MGPC-WLDIKGADFNSIRNASHCAVEVSVDKPQNITPTTTKTMPNLRCLSLS 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,436,018
Number of Sequences: 62578
Number of extensions: 611929
Number of successful extensions: 1769
Number of sequences better than 100.0: 121
Number of HSP's better than 100.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1383
Number of HSP's gapped (non-prelim): 204
length of query: 414
length of database: 14,973,337
effective HSP length: 101
effective length of query: 313
effective length of database: 8,652,959
effective search space: 2708376167
effective search space used: 2708376167
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)