Query psy793
Match_columns 414
No_of_seqs 383 out of 3785
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 22:28:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy793.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/793hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546|consensus 100.0 1.6E-77 3.5E-82 541.6 23.3 362 4-411 2-372 (372)
2 KOG0880|consensus 100.0 8.4E-52 1.8E-56 342.2 14.6 169 9-229 38-208 (217)
3 KOG0879|consensus 100.0 1.7E-50 3.7E-55 312.7 11.9 173 4-223 4-177 (177)
4 PTZ00221 cyclophilin; Provisio 100.0 7.2E-46 1.6E-50 330.1 16.5 174 8-230 50-226 (249)
5 PTZ00060 cyclophilin; Provisio 100.0 1.1E-45 2.5E-50 320.0 16.0 171 7-223 12-182 (183)
6 cd01926 cyclophilin_ABH_like c 100.0 2.4E-45 5.2E-50 313.8 16.0 164 11-221 1-164 (164)
7 PLN03149 peptidyl-prolyl isome 100.0 7E-45 1.5E-49 315.2 15.2 170 7-223 15-186 (186)
8 KOG0881|consensus 100.0 5.9E-46 1.3E-50 284.0 6.8 156 5-221 4-161 (164)
9 COG0652 PpiB Peptidyl-prolyl c 100.0 2E-44 4.4E-49 298.2 11.8 145 20-221 4-155 (158)
10 KOG0111|consensus 100.0 2.5E-44 5.5E-49 301.8 9.0 164 8-223 134-297 (298)
11 cd01927 cyclophilin_WD40 cyclo 100.0 1.9E-41 4E-46 284.3 12.4 143 21-219 3-147 (148)
12 cd01923 cyclophilin_RING cyclo 100.0 3.2E-41 7E-46 286.3 13.3 151 22-228 6-158 (159)
13 cd01928 Cyclophilin_PPIL3_like 100.0 2.9E-41 6.3E-46 284.5 12.8 144 21-220 6-151 (153)
14 cd01922 cyclophilin_SpCYP2_lik 100.0 3.5E-41 7.5E-46 281.7 12.2 142 21-218 3-145 (146)
15 cd01921 cyclophilin_RRM cyclop 100.0 8.4E-41 1.8E-45 286.1 12.5 160 21-229 3-165 (166)
16 KOG0883|consensus 100.0 1.4E-40 3.1E-45 300.7 7.6 150 21-226 283-434 (518)
17 KOG0884|consensus 100.0 3E-40 6.5E-45 251.2 7.1 146 21-222 6-154 (161)
18 PRK10903 peptidyl-prolyl cis-t 100.0 7.7E-39 1.7E-43 278.1 13.6 155 7-223 25-189 (190)
19 KOG0882|consensus 100.0 1.1E-39 2.3E-44 301.0 8.3 154 11-220 400-555 (558)
20 cd01925 cyclophilin_CeCYP16-li 100.0 2.2E-38 4.8E-43 272.0 13.6 158 11-229 6-166 (171)
21 cd01920 cyclophilin_EcCYP_like 100.0 6E-38 1.3E-42 265.2 12.4 142 21-219 3-154 (155)
22 PRK10791 peptidyl-prolyl cis-t 100.0 8.1E-38 1.8E-42 265.8 12.5 144 21-221 5-161 (164)
23 KOG0865|consensus 100.0 2.8E-37 6E-42 257.7 8.8 163 9-223 2-167 (167)
24 cd01924 cyclophilin_TLP40_like 100.0 2.6E-36 5.5E-41 259.4 12.5 149 21-203 3-164 (176)
25 cd00317 cyclophilin cyclophili 100.0 1.3E-34 2.8E-39 244.4 12.5 141 21-218 3-145 (146)
26 PF00160 Pro_isomerase: Cyclop 100.0 4.7E-34 1E-38 243.6 12.9 152 14-222 1-155 (155)
27 KOG0415|consensus 100.0 1.8E-33 3.9E-38 251.9 12.5 162 21-231 6-170 (479)
28 KOG0885|consensus 100.0 5.7E-34 1.2E-38 257.2 9.2 161 11-232 13-176 (439)
29 KOG0543|consensus 99.9 3.2E-25 6.9E-30 206.2 20.1 157 256-413 200-356 (397)
30 KOG0553|consensus 99.9 2.4E-21 5.1E-26 173.6 12.6 125 259-399 76-200 (304)
31 KOG0545|consensus 99.8 1.4E-19 3.1E-24 156.8 18.0 169 244-412 158-329 (329)
32 KOG4234|consensus 99.8 2E-19 4.3E-24 151.5 15.5 138 257-405 88-225 (271)
33 KOG0548|consensus 99.7 1.7E-16 3.6E-21 152.0 12.9 117 263-395 357-473 (539)
34 KOG0547|consensus 99.7 7.4E-16 1.6E-20 145.7 14.4 135 253-403 104-239 (606)
35 KOG4648|consensus 99.6 3.8E-16 8.3E-21 141.7 9.0 121 257-393 90-210 (536)
36 PRK15359 type III secretion sy 99.6 1.1E-14 2.4E-19 122.2 14.7 116 266-397 26-141 (144)
37 PLN03088 SGT1, suppressor of 99.6 6.1E-15 1.3E-19 142.4 14.5 118 265-398 3-120 (356)
38 PRK15363 pathogenicity island 99.5 1.7E-13 3.8E-18 113.6 14.7 111 262-388 33-146 (157)
39 KOG0550|consensus 99.5 2.4E-14 5.3E-19 133.1 10.5 130 257-399 242-371 (486)
40 KOG0548|consensus 99.5 3.5E-14 7.5E-19 136.3 10.1 113 264-392 2-114 (539)
41 TIGR02552 LcrH_SycD type III s 99.5 1.2E-12 2.6E-17 108.6 14.3 116 264-395 17-132 (135)
42 TIGR00990 3a0801s09 mitochondr 99.5 2.7E-12 5.9E-17 133.6 19.2 113 253-382 116-228 (615)
43 KOG0551|consensus 99.5 5.8E-13 1.3E-17 120.9 12.1 107 262-380 79-185 (390)
44 KOG4626|consensus 99.5 1.8E-13 3.8E-18 133.0 9.0 123 264-402 252-374 (966)
45 KOG4626|consensus 99.4 5.2E-13 1.1E-17 129.8 11.7 122 264-401 388-509 (966)
46 KOG4642|consensus 99.4 1E-12 2.3E-17 114.1 8.6 115 262-392 8-127 (284)
47 KOG0376|consensus 99.4 3.5E-13 7.5E-18 128.5 6.1 120 264-399 4-123 (476)
48 PRK11189 lipoprotein NlpI; Pro 99.4 1E-11 2.2E-16 117.3 14.0 105 263-383 63-167 (296)
49 TIGR00990 3a0801s09 mitochondr 99.3 2.2E-11 4.7E-16 126.9 14.9 138 263-400 330-485 (615)
50 PRK10370 formate-dependent nit 99.3 4.2E-11 9.1E-16 106.0 13.7 107 264-386 73-182 (198)
51 PF13414 TPR_11: TPR repeat; P 99.3 1.2E-11 2.6E-16 89.9 7.8 66 314-379 3-69 (69)
52 TIGR02795 tol_pal_ybgF tol-pal 99.3 8.7E-11 1.9E-15 94.7 12.2 112 264-388 2-116 (119)
53 PRK15359 type III secretion sy 99.2 1E-10 2.2E-15 98.1 12.2 101 284-403 13-113 (144)
54 KOG1155|consensus 99.2 2.3E-10 5.1E-15 108.3 15.6 123 265-403 365-487 (559)
55 KOG1155|consensus 99.2 1E-10 2.2E-15 110.7 12.2 118 270-403 336-453 (559)
56 KOG1126|consensus 99.2 1.7E-11 3.6E-16 120.7 7.1 139 264-402 421-577 (638)
57 PRK15331 chaperone protein Sic 99.2 1.9E-10 4.2E-15 95.9 12.2 120 263-399 36-155 (165)
58 COG3063 PilF Tfp pilus assembl 99.2 2.6E-10 5.7E-15 99.2 13.3 101 260-376 31-131 (250)
59 PRK02603 photosystem I assembl 99.2 5.6E-10 1.2E-14 96.8 14.5 110 260-382 31-154 (172)
60 KOG0624|consensus 99.2 3.7E-10 8E-15 103.3 12.9 113 264-392 38-153 (504)
61 PRK10370 formate-dependent nit 99.2 3.8E-10 8.3E-15 99.8 12.8 116 277-409 52-170 (198)
62 PRK09782 bacteriophage N4 rece 99.2 5.7E-10 1.2E-14 119.9 15.5 113 268-396 613-725 (987)
63 KOG0547|consensus 99.2 3.6E-10 7.8E-15 107.7 12.2 124 261-400 323-446 (606)
64 PRK15179 Vi polysaccharide bio 99.1 4.8E-10 1E-14 116.1 14.0 124 264-403 86-209 (694)
65 PRK12370 invasion protein regu 99.1 5.6E-10 1.2E-14 114.6 14.5 75 310-384 334-408 (553)
66 cd00189 TPR Tetratricopeptide 99.1 5E-10 1.1E-14 85.0 10.7 99 266-380 2-100 (100)
67 PF13432 TPR_16: Tetratricopep 99.1 2.4E-10 5.3E-15 81.9 8.0 65 318-382 1-65 (65)
68 PF12895 Apc3: Anaphase-promot 99.1 2.2E-10 4.7E-15 86.8 7.9 81 277-374 2-84 (84)
69 PF13414 TPR_11: TPR repeat; P 99.1 1.5E-10 3.2E-15 84.1 6.3 66 264-345 3-69 (69)
70 KOG1126|consensus 99.1 5.6E-10 1.2E-14 110.2 12.1 124 265-404 490-613 (638)
71 TIGR02521 type_IV_pilW type IV 99.1 1.8E-09 3.9E-14 96.9 14.7 138 264-401 31-188 (234)
72 PRK09782 bacteriophage N4 rece 99.1 1.1E-09 2.4E-14 117.8 15.2 110 277-403 589-698 (987)
73 KOG1308|consensus 99.1 6.3E-11 1.4E-15 108.4 4.8 107 257-379 107-213 (377)
74 TIGR03302 OM_YfiO outer membra 99.1 2.8E-09 6.1E-14 97.2 15.8 113 264-389 33-156 (235)
75 PRK12370 invasion protein regu 99.1 8.8E-10 1.9E-14 113.1 13.6 132 277-409 317-467 (553)
76 CHL00033 ycf3 photosystem I as 99.1 3.1E-09 6.6E-14 91.7 14.5 109 261-382 32-154 (168)
77 TIGR02521 type_IV_pilW type IV 99.1 2.4E-09 5.2E-14 96.2 14.5 91 312-402 133-223 (234)
78 TIGR02552 LcrH_SycD type III s 99.1 1.3E-09 2.7E-14 90.4 11.3 94 310-403 13-106 (135)
79 PRK15363 pathogenicity island 99.1 3.8E-09 8.3E-14 87.8 13.5 94 311-404 32-125 (157)
80 KOG1125|consensus 99.1 4.2E-10 9E-15 109.4 8.0 118 266-399 432-559 (579)
81 KOG4555|consensus 99.0 1.2E-08 2.6E-13 80.8 14.6 133 259-413 38-174 (175)
82 KOG1173|consensus 99.0 2.7E-09 5.8E-14 103.5 13.2 121 265-394 415-535 (611)
83 PRK11189 lipoprotein NlpI; Pro 99.0 3.5E-09 7.5E-14 100.0 14.0 114 278-403 40-153 (296)
84 COG5010 TadD Flp pilus assembl 99.0 2.7E-09 5.9E-14 94.7 12.0 122 266-403 102-223 (257)
85 PF13429 TPR_15: Tetratricopep 99.0 1.2E-09 2.6E-14 102.4 10.1 124 264-403 146-269 (280)
86 PRK15174 Vi polysaccharide exp 99.0 3.7E-09 8.1E-14 110.5 14.2 119 267-401 249-371 (656)
87 PRK15174 Vi polysaccharide exp 99.0 3.6E-09 7.8E-14 110.6 13.9 119 269-403 217-339 (656)
88 KOG0624|consensus 99.0 2.9E-09 6.2E-14 97.5 9.2 127 259-397 264-390 (504)
89 PLN02789 farnesyltranstransfer 99.0 2.4E-08 5.2E-13 94.6 16.0 115 265-395 72-189 (320)
90 KOG0553|consensus 99.0 5.4E-09 1.2E-13 94.6 10.7 94 316-410 83-176 (304)
91 PLN02789 farnesyltranstransfer 99.0 6.7E-08 1.5E-12 91.6 18.7 120 274-410 47-169 (320)
92 PF13512 TPR_18: Tetratricopep 98.9 1.1E-08 2.3E-13 83.7 11.1 111 264-387 10-138 (142)
93 PF13371 TPR_9: Tetratricopept 98.9 5.5E-09 1.2E-13 76.6 8.4 71 321-391 2-72 (73)
94 KOG2003|consensus 98.9 6.4E-09 1.4E-13 98.3 10.2 127 264-406 490-616 (840)
95 PRK10049 pgaA outer membrane p 98.9 1.9E-08 4.2E-13 107.2 14.4 115 264-395 49-163 (765)
96 TIGR02917 PEP_TPR_lipo putativ 98.9 1.9E-08 4.2E-13 108.5 14.6 126 266-409 772-897 (899)
97 PRK11447 cellulose synthase su 98.9 1.9E-08 4.2E-13 111.9 14.5 121 267-403 354-516 (1157)
98 TIGR03302 OM_YfiO outer membra 98.9 2.4E-08 5.3E-13 91.0 12.7 126 265-403 71-224 (235)
99 PF14559 TPR_19: Tetratricopep 98.9 6.5E-09 1.4E-13 75.1 7.1 68 324-391 1-68 (68)
100 PRK10803 tol-pal system protei 98.9 4.4E-08 9.5E-13 90.2 13.9 114 265-391 143-260 (263)
101 TIGR02917 PEP_TPR_lipo putativ 98.9 3E-08 6.4E-13 107.0 14.7 123 263-401 124-246 (899)
102 PRK11788 tetratricopeptide rep 98.9 5.9E-08 1.3E-12 95.2 15.4 116 266-398 182-298 (389)
103 PRK11788 tetratricopeptide rep 98.8 5.3E-08 1.1E-12 95.6 14.5 90 314-403 180-270 (389)
104 PRK11447 cellulose synthase su 98.8 2.9E-08 6.2E-13 110.6 13.6 125 269-393 274-430 (1157)
105 KOG0550|consensus 98.8 4.9E-08 1.1E-12 91.6 12.8 137 263-403 202-342 (486)
106 PF13525 YfiO: Outer membrane 98.8 1.4E-07 3.1E-12 83.9 15.4 125 263-400 4-145 (203)
107 KOG2076|consensus 98.8 9.5E-08 2.1E-12 97.5 15.8 122 263-400 138-259 (895)
108 PRK10866 outer membrane biogen 98.8 2.3E-07 5E-12 84.7 16.3 125 264-401 32-180 (243)
109 PRK15179 Vi polysaccharide bio 98.8 7E-08 1.5E-12 100.2 14.4 114 264-393 120-234 (694)
110 cd00189 TPR Tetratricopeptide 98.8 1.2E-07 2.6E-12 71.6 12.1 88 316-403 2-89 (100)
111 COG3063 PilF Tfp pilus assembl 98.8 5.2E-08 1.1E-12 85.0 10.9 119 264-398 69-189 (250)
112 PF13432 TPR_16: Tetratricopep 98.8 1.2E-08 2.5E-13 73.1 5.6 64 269-348 2-65 (65)
113 PF06552 TOM20_plant: Plant sp 98.8 1.7E-07 3.6E-12 79.1 12.7 108 280-403 7-135 (186)
114 CHL00033 ycf3 photosystem I as 98.7 1.3E-07 2.8E-12 81.5 11.9 112 271-396 6-120 (168)
115 KOG1125|consensus 98.7 5.4E-08 1.2E-12 95.0 10.0 96 312-407 428-523 (579)
116 PLN03088 SGT1, suppressor of 98.7 1.1E-07 2.3E-12 92.1 12.0 87 317-403 5-91 (356)
117 PRK02603 photosystem I assembl 98.7 1.9E-07 4.1E-12 80.9 12.3 89 310-398 31-122 (172)
118 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 3.2E-08 6.9E-13 95.3 8.0 69 310-378 71-142 (453)
119 COG4783 Putative Zn-dependent 98.7 2.8E-07 6E-12 88.6 14.0 132 264-411 306-437 (484)
120 PF13424 TPR_12: Tetratricopep 98.7 3.7E-08 8.1E-13 73.2 6.5 67 311-377 2-75 (78)
121 PRK10049 pgaA outer membrane p 98.7 1.3E-07 2.9E-12 100.8 13.2 109 264-388 359-467 (765)
122 COG4235 Cytochrome c biogenesi 98.7 2.4E-07 5.1E-12 84.5 12.8 115 264-394 156-273 (287)
123 PF13424 TPR_12: Tetratricopep 98.7 1.3E-07 2.9E-12 70.2 9.4 73 262-343 3-75 (78)
124 COG4785 NlpI Lipoprotein NlpI, 98.7 7.4E-08 1.6E-12 83.2 8.9 108 262-385 63-170 (297)
125 KOG4162|consensus 98.7 8.9E-08 1.9E-12 96.2 9.9 115 269-399 655-771 (799)
126 KOG2002|consensus 98.7 4.1E-07 8.8E-12 93.6 14.6 119 265-396 271-390 (1018)
127 COG5010 TadD Flp pilus assembl 98.7 3.4E-07 7.5E-12 81.5 12.1 99 310-408 96-194 (257)
128 PRK14574 hmsH outer membrane p 98.7 3.1E-07 6.7E-12 97.2 14.0 121 264-384 34-172 (822)
129 KOG1128|consensus 98.7 1.1E-07 2.3E-12 95.2 9.8 123 264-402 485-607 (777)
130 KOG1840|consensus 98.6 3.6E-07 7.8E-12 90.9 13.1 134 262-403 239-388 (508)
131 TIGR02795 tol_pal_ybgF tol-pal 98.6 4.6E-07 9.9E-12 72.7 11.3 88 315-402 3-96 (119)
132 PF14559 TPR_19: Tetratricopep 98.6 8.7E-08 1.9E-12 69.1 5.8 67 274-356 1-67 (68)
133 PF09976 TPR_21: Tetratricopep 98.6 5.9E-07 1.3E-11 75.4 11.1 94 267-374 51-144 (145)
134 KOG1840|consensus 98.6 9.3E-07 2E-11 88.0 13.9 134 261-402 280-429 (508)
135 PF13371 TPR_9: Tetratricopept 98.6 2.6E-07 5.7E-12 67.6 7.6 70 271-356 2-71 (73)
136 PF12688 TPR_5: Tetratrico pep 98.5 1.3E-06 2.9E-11 70.2 11.2 99 265-376 2-103 (120)
137 COG2956 Predicted N-acetylgluc 98.5 2.1E-06 4.5E-11 78.6 13.5 92 312-403 178-270 (389)
138 KOG1310|consensus 98.5 4E-07 8.7E-12 87.9 9.2 125 257-397 367-494 (758)
139 COG1729 Uncharacterized protei 98.5 1.1E-06 2.4E-11 79.3 11.0 114 265-391 142-258 (262)
140 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 1.8E-06 4E-11 83.3 13.0 65 264-344 75-142 (453)
141 COG4783 Putative Zn-dependent 98.5 1.6E-06 3.4E-11 83.6 12.3 109 269-393 345-453 (484)
142 KOG2003|consensus 98.5 2.7E-07 5.8E-12 87.5 6.7 97 269-377 242-338 (840)
143 KOG1129|consensus 98.5 3.3E-07 7.2E-12 83.8 7.0 135 267-401 293-448 (478)
144 PRK14720 transcript cleavage f 98.5 2E-06 4.3E-11 90.6 13.7 114 264-395 31-163 (906)
145 PF13429 TPR_15: Tetratricopep 98.5 6.8E-07 1.5E-11 83.8 9.2 122 267-402 113-234 (280)
146 KOG3060|consensus 98.4 8.4E-06 1.8E-10 72.3 13.9 136 267-402 89-245 (289)
147 KOG1156|consensus 98.4 2.1E-06 4.5E-11 85.0 10.9 121 265-401 8-128 (700)
148 KOG1128|consensus 98.4 1.8E-06 3.9E-11 86.6 10.4 118 271-403 457-574 (777)
149 PF12895 Apc3: Anaphase-promot 98.4 8.3E-07 1.8E-11 67.0 6.2 77 327-404 2-80 (84)
150 PF12968 DUF3856: Domain of Un 98.4 2.4E-05 5.2E-10 61.1 14.1 107 267-377 12-129 (144)
151 PRK14574 hmsH outer membrane p 98.4 3.9E-06 8.4E-11 89.0 13.3 121 265-402 103-223 (822)
152 TIGR00540 hemY_coli hemY prote 98.4 1.5E-05 3.2E-10 79.0 16.6 127 260-402 80-207 (409)
153 PRK11906 transcriptional regul 98.3 7.6E-06 1.6E-10 79.3 13.3 119 267-401 258-391 (458)
154 KOG4162|consensus 98.3 6.5E-06 1.4E-10 83.1 13.2 101 267-383 687-789 (799)
155 PF09976 TPR_21: Tetratricopep 98.3 1.9E-05 4.2E-10 66.2 14.4 130 260-403 7-139 (145)
156 KOG2002|consensus 98.3 6.2E-06 1.3E-10 85.2 13.2 132 264-401 452-583 (1018)
157 PRK15331 chaperone protein Sic 98.3 1.1E-05 2.3E-10 67.7 11.8 99 305-403 28-126 (165)
158 PRK10153 DNA-binding transcrip 98.3 1.5E-05 3.3E-10 80.5 15.0 119 264-383 339-488 (517)
159 PRK10747 putative protoheme IX 98.3 3.6E-05 7.9E-10 75.9 17.1 127 259-402 79-207 (398)
160 KOG3060|consensus 98.3 3.4E-05 7.3E-10 68.6 14.5 85 268-368 158-245 (289)
161 PF12688 TPR_5: Tetratrico pep 98.3 1.4E-05 3.1E-10 64.2 11.3 90 315-404 2-97 (120)
162 KOG2076|consensus 98.3 1.6E-05 3.5E-10 81.6 14.1 99 265-379 174-272 (895)
163 COG2956 Predicted N-acetylgluc 98.3 2.6E-05 5.5E-10 71.6 13.6 124 263-402 106-234 (389)
164 PRK10803 tol-pal system protei 98.2 1.3E-05 2.7E-10 74.0 11.4 94 314-408 142-242 (263)
165 cd05804 StaR_like StaR_like; a 98.2 8.1E-06 1.8E-10 79.0 10.8 100 264-379 114-217 (355)
166 KOG0543|consensus 98.2 6E-06 1.3E-10 78.1 9.2 97 267-379 260-357 (397)
167 KOG1129|consensus 98.2 9.1E-07 2E-11 80.9 3.6 123 262-400 254-413 (478)
168 COG4235 Cytochrome c biogenesi 98.2 1.7E-05 3.6E-10 72.6 11.8 100 310-410 152-254 (287)
169 cd05804 StaR_like StaR_like; a 98.2 1.4E-05 3.1E-10 77.4 12.2 138 266-403 45-207 (355)
170 PF00515 TPR_1: Tetratricopept 98.2 2.5E-06 5.5E-11 52.2 4.5 34 348-381 1-34 (34)
171 PF14938 SNAP: Soluble NSF att 98.2 3.1E-05 6.7E-10 72.6 13.8 111 261-381 111-229 (282)
172 PF03704 BTAD: Bacterial trans 98.2 7.4E-05 1.6E-09 62.6 14.6 114 264-377 6-125 (146)
173 PF14938 SNAP: Soluble NSF att 98.2 2E-05 4.3E-10 73.9 12.0 132 259-401 30-174 (282)
174 TIGR00540 hemY_coli hemY prote 98.2 1.6E-05 3.4E-10 78.8 11.3 128 263-408 262-395 (409)
175 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 1.2E-05 2.7E-10 77.9 9.7 81 320-400 206-286 (395)
176 PF13428 TPR_14: Tetratricopep 98.1 6.7E-06 1.4E-10 53.6 5.4 42 349-390 2-43 (44)
177 KOG4648|consensus 98.1 6.5E-06 1.4E-10 75.9 7.0 84 318-401 101-184 (536)
178 KOG1174|consensus 98.1 1.4E-05 3.1E-10 75.4 9.3 126 270-396 374-519 (564)
179 PF13431 TPR_17: Tetratricopep 98.1 2.6E-06 5.6E-11 52.1 2.9 34 336-369 1-34 (34)
180 PF07719 TPR_2: Tetratricopept 98.1 8.6E-06 1.9E-10 49.7 5.0 34 348-381 1-34 (34)
181 KOG1130|consensus 98.1 3.2E-05 7E-10 73.1 11.0 130 262-401 193-334 (639)
182 COG4105 ComL DNA uptake lipopr 98.1 0.00014 3E-09 65.3 14.4 122 264-398 34-169 (254)
183 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 5.3E-05 1.2E-09 73.6 12.6 77 310-386 230-306 (395)
184 KOG1173|consensus 98.1 1.5E-05 3.2E-10 78.1 8.6 124 264-403 312-435 (611)
185 KOG1174|consensus 98.1 4.2E-05 9E-10 72.4 11.1 120 264-400 334-489 (564)
186 KOG4234|consensus 98.0 4.3E-05 9.2E-10 65.6 9.9 81 320-400 101-186 (271)
187 PF04733 Coatomer_E: Coatomer 98.0 2.2E-05 4.9E-10 73.5 8.8 113 270-398 137-251 (290)
188 PF00515 TPR_1: Tetratricopept 98.0 8.9E-06 1.9E-10 49.7 4.1 34 314-347 1-34 (34)
189 PF12569 NARP1: NMDA receptor- 98.0 4.8E-05 1E-09 76.6 11.5 92 312-403 192-283 (517)
190 COG1729 Uncharacterized protei 98.0 7E-05 1.5E-09 67.8 11.0 86 317-402 144-235 (262)
191 PRK10153 DNA-binding transcrip 98.0 3.2E-05 7E-10 78.2 9.7 40 310-350 450-489 (517)
192 PF13525 YfiO: Outer membrane 98.0 0.00055 1.2E-08 60.9 16.0 125 264-401 42-197 (203)
193 PRK11906 transcriptional regul 97.9 4.1E-05 9E-10 74.3 9.2 90 278-383 318-407 (458)
194 KOG1156|consensus 97.9 6E-05 1.3E-09 75.0 10.4 120 265-400 42-161 (700)
195 PRK10747 putative protoheme IX 97.9 8.4E-05 1.8E-09 73.3 11.7 118 264-401 263-380 (398)
196 PF13428 TPR_14: Tetratricopep 97.9 1.9E-05 4.1E-10 51.5 4.7 43 315-357 2-44 (44)
197 PRK14720 transcript cleavage f 97.9 9.6E-05 2.1E-09 78.2 12.3 113 265-394 117-269 (906)
198 PF14853 Fis1_TPR_C: Fis1 C-te 97.9 7.2E-05 1.6E-09 50.5 7.5 49 349-397 2-50 (53)
199 PF12569 NARP1: NMDA receptor- 97.9 0.00026 5.7E-09 71.4 14.8 54 349-402 195-248 (517)
200 COG4700 Uncharacterized protei 97.9 0.00024 5.2E-09 60.4 11.6 116 265-396 90-207 (251)
201 KOG1127|consensus 97.9 9.5E-05 2.1E-09 76.8 10.4 139 263-401 491-649 (1238)
202 KOG4555|consensus 97.8 0.00034 7.4E-09 55.9 11.2 83 319-401 48-134 (175)
203 KOG1127|consensus 97.8 0.00012 2.6E-09 76.1 9.6 114 267-396 565-678 (1238)
204 PF07719 TPR_2: Tetratricopept 97.8 6.5E-05 1.4E-09 45.7 4.7 33 315-347 2-34 (34)
205 PF15015 NYD-SP12_N: Spermatog 97.7 0.00028 6.1E-09 67.0 10.7 120 257-376 169-290 (569)
206 KOG1130|consensus 97.7 0.00037 7.9E-09 66.1 11.4 121 265-395 236-368 (639)
207 KOG2796|consensus 97.7 0.00089 1.9E-08 60.0 13.0 118 266-393 214-334 (366)
208 PF04733 Coatomer_E: Coatomer 97.7 0.00016 3.6E-09 67.8 8.9 102 270-387 171-275 (290)
209 PRK10866 outer membrane biogen 97.7 0.00025 5.4E-09 64.8 9.6 80 313-392 31-116 (243)
210 KOG4642|consensus 97.7 7.9E-05 1.7E-09 65.6 5.7 82 320-401 16-97 (284)
211 PF13181 TPR_8: Tetratricopept 97.7 7.8E-05 1.7E-09 45.4 4.2 32 349-380 2-33 (34)
212 KOG3785|consensus 97.7 0.00013 2.8E-09 67.8 7.1 111 270-396 63-199 (557)
213 COG4785 NlpI Lipoprotein NlpI, 97.6 0.00019 4E-09 62.5 7.2 96 310-405 61-156 (297)
214 KOG0495|consensus 97.6 0.00078 1.7E-08 67.4 12.3 130 267-396 587-733 (913)
215 PRK10941 hypothetical protein; 97.6 0.00084 1.8E-08 61.9 11.8 81 311-391 178-258 (269)
216 PF13512 TPR_18: Tetratricopep 97.6 0.00046 1E-08 56.7 8.7 80 314-393 10-95 (142)
217 KOG4151|consensus 97.6 0.00028 6E-09 72.1 8.9 124 257-392 46-171 (748)
218 KOG0495|consensus 97.6 0.0014 3.1E-08 65.6 13.2 118 269-402 656-773 (913)
219 KOG3364|consensus 97.6 0.002 4.2E-08 51.9 11.5 85 313-397 31-120 (149)
220 COG3071 HemY Uncharacterized e 97.5 0.0045 9.8E-08 58.7 15.5 127 259-401 79-206 (400)
221 KOG4507|consensus 97.4 0.00043 9.4E-09 68.3 7.6 108 270-393 613-721 (886)
222 KOG3785|consensus 97.4 0.0012 2.5E-08 61.6 9.9 102 273-393 31-132 (557)
223 KOG2053|consensus 97.4 0.0027 5.9E-08 65.7 13.3 118 273-407 18-135 (932)
224 KOG1941|consensus 97.4 0.0013 2.9E-08 61.5 10.1 108 267-385 125-245 (518)
225 PF09986 DUF2225: Uncharacteri 97.4 0.0078 1.7E-07 53.7 14.6 104 270-382 83-199 (214)
226 KOG4814|consensus 97.4 0.0027 5.9E-08 63.4 12.5 106 262-377 352-457 (872)
227 KOG3081|consensus 97.3 0.0039 8.4E-08 56.2 12.0 73 328-400 187-259 (299)
228 KOG1586|consensus 97.3 0.022 4.7E-07 50.5 15.8 126 264-399 113-248 (288)
229 PF14853 Fis1_TPR_C: Fis1 C-te 97.3 0.0011 2.3E-08 44.8 6.1 41 315-355 2-42 (53)
230 KOG1941|consensus 97.3 0.0051 1.1E-07 57.7 12.3 138 263-400 5-180 (518)
231 PF13431 TPR_17: Tetratricopep 97.3 0.00015 3.1E-09 44.3 1.6 34 286-335 1-34 (34)
232 COG3118 Thioredoxin domain-con 97.3 0.012 2.6E-07 54.1 14.4 130 265-410 135-304 (304)
233 PF13181 TPR_8: Tetratricopept 97.2 0.00048 1.1E-08 41.8 3.9 33 315-347 2-34 (34)
234 PF10300 DUF3808: Protein of u 97.2 0.0029 6.4E-08 63.5 11.6 101 265-378 268-377 (468)
235 KOG2376|consensus 97.2 0.004 8.6E-08 61.8 11.7 90 268-376 83-203 (652)
236 PF06552 TOM20_plant: Plant sp 97.2 0.0038 8.3E-08 53.1 9.8 71 329-399 6-86 (186)
237 PF13174 TPR_6: Tetratricopept 97.1 0.00084 1.8E-08 40.3 4.1 31 350-380 2-32 (33)
238 COG0457 NrfG FOG: TPR repeat [ 97.1 0.013 2.8E-07 51.0 13.6 108 273-393 139-247 (291)
239 KOG0551|consensus 97.1 0.0029 6.4E-08 58.6 8.9 83 315-397 82-168 (390)
240 KOG1585|consensus 97.0 0.062 1.3E-06 48.0 16.2 131 264-404 31-172 (308)
241 KOG2376|consensus 97.0 0.011 2.3E-07 58.9 12.2 119 265-386 13-148 (652)
242 KOG3824|consensus 97.0 0.0046 1E-07 56.7 8.7 75 318-392 120-194 (472)
243 PF04184 ST7: ST7 protein; In 97.0 0.014 2.9E-07 57.3 12.4 59 316-374 261-321 (539)
244 KOG0376|consensus 96.9 0.001 2.2E-08 64.5 4.8 82 318-399 8-89 (476)
245 COG0457 NrfG FOG: TPR repeat [ 96.9 0.05 1.1E-06 47.2 15.5 99 267-379 62-161 (291)
246 KOG2471|consensus 96.9 0.0014 3.1E-08 63.5 5.6 119 266-393 242-380 (696)
247 COG2976 Uncharacterized protei 96.9 0.028 6E-07 48.5 12.7 104 264-381 89-192 (207)
248 smart00028 TPR Tetratricopepti 96.9 0.0018 3.9E-08 37.7 3.9 31 350-380 3-33 (34)
249 PF13176 TPR_7: Tetratricopept 96.8 0.0023 5.1E-08 39.4 4.1 26 350-375 1-26 (36)
250 KOG1308|consensus 96.8 0.00093 2E-08 62.1 3.0 78 326-403 126-203 (377)
251 KOG1585|consensus 96.8 0.032 6.9E-07 49.8 12.3 115 267-391 113-237 (308)
252 KOG0882|consensus 96.8 0.002 4.3E-08 61.7 5.0 145 26-221 113-260 (558)
253 KOG2610|consensus 96.7 0.028 6.2E-07 52.3 12.1 122 265-402 104-229 (491)
254 PF13174 TPR_6: Tetratricopept 96.7 0.0029 6.3E-08 37.8 4.0 33 315-347 1-33 (33)
255 PF13176 TPR_7: Tetratricopept 96.7 0.0027 5.9E-08 39.2 3.8 29 316-344 1-29 (36)
256 KOG0545|consensus 96.7 0.013 2.9E-07 52.2 9.1 90 314-403 178-285 (329)
257 KOG4340|consensus 96.7 0.025 5.4E-07 51.9 11.0 103 274-396 20-122 (459)
258 PRK04841 transcriptional regul 96.6 0.054 1.2E-06 59.4 15.8 101 268-378 495-603 (903)
259 COG4105 ComL DNA uptake lipopr 96.6 0.016 3.4E-07 52.3 9.3 71 314-384 34-107 (254)
260 PF03704 BTAD: Bacterial trans 96.6 0.079 1.7E-06 44.1 13.3 86 318-403 10-117 (146)
261 COG4976 Predicted methyltransf 96.6 0.0033 7.2E-08 55.3 4.7 61 323-383 4-64 (287)
262 PF10602 RPN7: 26S proteasome 96.5 0.051 1.1E-06 47.1 12.0 102 263-377 35-142 (177)
263 PLN03081 pentatricopeptide (PP 96.5 0.017 3.6E-07 61.5 10.9 111 267-377 429-557 (697)
264 PF14561 TPR_20: Tetratricopep 96.5 0.02 4.4E-07 43.5 8.4 68 333-400 7-76 (90)
265 COG4700 Uncharacterized protei 96.5 0.074 1.6E-06 45.6 12.4 113 273-402 65-180 (251)
266 KOG4340|consensus 96.5 0.038 8.3E-07 50.7 11.2 120 266-401 46-197 (459)
267 PF08631 SPO22: Meiosis protei 96.5 0.2 4.4E-06 46.7 16.8 122 256-379 27-152 (278)
268 smart00028 TPR Tetratricopepti 96.5 0.005 1.1E-07 35.7 4.0 33 315-347 2-34 (34)
269 COG2912 Uncharacterized conser 96.5 0.044 9.5E-07 50.0 11.5 82 310-391 177-258 (269)
270 COG3071 HemY Uncharacterized e 96.5 0.045 9.7E-07 52.1 11.8 117 265-401 264-380 (400)
271 PLN03081 pentatricopeptide (PP 96.4 0.083 1.8E-06 56.2 15.3 135 267-403 394-549 (697)
272 PRK04841 transcriptional regul 96.4 0.064 1.4E-06 58.8 14.9 100 267-377 455-560 (903)
273 KOG2796|consensus 96.3 0.094 2E-06 47.4 12.1 124 264-402 177-306 (366)
274 KOG2396|consensus 96.3 0.18 4E-06 49.6 15.1 95 311-405 102-197 (568)
275 PF04184 ST7: ST7 protein; In 96.3 0.077 1.7E-06 52.2 12.4 58 348-405 259-318 (539)
276 KOG1586|consensus 96.2 0.23 5E-06 44.2 14.1 111 260-381 30-147 (288)
277 PLN03077 Protein ECB2; Provisi 96.2 0.038 8.2E-07 60.3 11.6 135 267-403 557-712 (857)
278 PLN03218 maturation of RBCL 1; 96.2 0.095 2.1E-06 57.9 14.5 59 317-375 652-711 (1060)
279 PF04781 DUF627: Protein of un 96.2 0.042 9.1E-07 43.0 8.4 96 270-378 2-108 (111)
280 PLN03218 maturation of RBCL 1; 96.2 0.11 2.5E-06 57.3 14.7 23 269-291 512-534 (1060)
281 KOG1915|consensus 96.1 0.091 2E-06 51.3 12.2 108 276-396 378-485 (677)
282 KOG3824|consensus 96.1 0.037 8E-07 51.0 9.0 84 257-357 110-193 (472)
283 PF05843 Suf: Suppressor of fo 96.1 0.057 1.2E-06 50.5 10.7 116 268-399 5-124 (280)
284 PF10579 Rapsyn_N: Rapsyn N-te 95.8 0.082 1.8E-06 38.5 7.9 69 262-343 4-72 (80)
285 KOG1915|consensus 95.7 0.18 4E-06 49.2 12.1 93 275-383 84-176 (677)
286 PF09613 HrpB1_HrpK: Bacterial 95.4 0.91 2E-05 38.2 13.9 114 262-393 8-121 (160)
287 COG4976 Predicted methyltransf 95.3 0.028 6E-07 49.7 4.8 61 272-348 3-63 (287)
288 PLN03077 Protein ECB2; Provisi 95.3 0.21 4.6E-06 54.5 12.6 84 314-397 657-766 (857)
289 TIGR03268 methan_mark_3 putati 95.2 0.025 5.5E-07 55.3 4.7 62 136-203 242-303 (503)
290 COG3629 DnrI DNA-binding trans 95.2 0.19 4.1E-06 46.5 10.3 73 305-377 144-216 (280)
291 KOG2471|consensus 95.2 0.034 7.5E-07 54.2 5.5 95 267-361 286-382 (696)
292 PRK00969 hypothetical protein; 95.2 0.025 5.3E-07 55.6 4.6 62 136-203 245-306 (508)
293 PRK13184 pknD serine/threonine 95.2 0.15 3.3E-06 55.1 10.9 123 267-403 478-607 (932)
294 cd02682 MIT_AAA_Arch MIT: doma 95.1 0.25 5.4E-06 35.9 8.5 64 261-324 3-66 (75)
295 PF02259 FAT: FAT domain; Int 95.1 0.37 8.1E-06 46.3 12.6 115 266-380 186-341 (352)
296 PF13374 TPR_10: Tetratricopep 95.0 0.048 1E-06 34.2 4.2 29 315-343 3-31 (42)
297 PF10300 DUF3808: Protein of u 95.0 0.33 7.1E-06 48.9 12.0 89 310-398 263-356 (468)
298 KOG3081|consensus 94.9 0.27 5.9E-06 44.6 10.0 74 311-384 204-278 (299)
299 KOG1070|consensus 94.8 0.35 7.5E-06 53.2 12.1 81 313-393 1563-1645(1710)
300 KOG4507|consensus 94.8 0.089 1.9E-06 52.6 7.1 129 268-410 216-348 (886)
301 PRK10941 hypothetical protein; 94.7 0.21 4.5E-06 46.2 9.1 78 264-357 181-258 (269)
302 PF09613 HrpB1_HrpK: Bacterial 94.7 0.52 1.1E-05 39.6 10.6 89 312-400 8-96 (160)
303 PF05843 Suf: Suppressor of fo 94.7 0.86 1.9E-05 42.6 13.3 104 267-386 38-145 (280)
304 COG4070 Predicted peptidyl-pro 94.6 0.027 5.9E-07 53.1 2.9 61 137-203 245-305 (512)
305 PF12968 DUF3856: Domain of Un 94.6 0.36 7.8E-06 38.3 8.6 72 267-343 58-129 (144)
306 PF12862 Apc5: Anaphase-promot 94.5 0.2 4.4E-06 38.3 7.4 65 273-344 7-71 (94)
307 KOG4814|consensus 94.5 0.88 1.9E-05 46.2 13.3 77 315-391 355-437 (872)
308 PF06957 COPI_C: Coatomer (COP 94.5 0.38 8.3E-06 47.1 10.7 122 264-386 204-338 (422)
309 PF13374 TPR_10: Tetratricopep 94.4 0.097 2.1E-06 32.8 4.5 31 348-378 2-32 (42)
310 COG3947 Response regulator con 94.3 0.28 6.2E-06 45.0 8.7 72 305-376 270-341 (361)
311 PF02259 FAT: FAT domain; Int 94.2 0.74 1.6E-05 44.2 12.3 128 262-401 144-311 (352)
312 PF04212 MIT: MIT (microtubule 94.1 0.57 1.2E-05 33.4 8.5 37 262-298 3-39 (69)
313 PF12862 Apc5: Anaphase-promot 94.0 0.57 1.2E-05 35.8 8.9 57 323-379 7-72 (94)
314 PF10516 SHNi-TPR: SHNi-TPR; 94.0 0.11 2.4E-06 32.3 3.8 29 349-377 2-30 (38)
315 KOG2300|consensus 93.8 2.6 5.6E-05 41.7 14.5 99 264-378 367-475 (629)
316 KOG3617|consensus 93.7 1.2 2.7E-05 46.6 12.8 64 314-377 858-941 (1416)
317 cd02683 MIT_1 MIT: domain cont 93.7 0.72 1.6E-05 33.8 8.4 62 262-323 4-65 (77)
318 PF08631 SPO22: Meiosis protei 93.7 3.1 6.7E-05 38.8 14.9 106 274-387 3-126 (278)
319 COG2976 Uncharacterized protei 93.6 3.4 7.4E-05 36.0 13.5 135 270-408 37-184 (207)
320 KOG2610|consensus 93.5 0.43 9.3E-06 44.8 8.5 64 310-373 171-234 (491)
321 PF14561 TPR_20: Tetratricopep 93.5 0.83 1.8E-05 34.6 8.7 56 310-365 18-75 (90)
322 PF07079 DUF1347: Protein of u 93.5 6.6 0.00014 38.6 16.6 71 319-393 467-541 (549)
323 KOG3364|consensus 93.5 0.56 1.2E-05 38.1 8.0 42 312-353 69-110 (149)
324 PF07720 TPR_3: Tetratricopept 93.4 0.27 6E-06 30.2 4.9 33 349-381 2-36 (36)
325 COG3898 Uncharacterized membra 93.2 3.5 7.7E-05 39.7 14.0 97 265-377 121-217 (531)
326 KOG2053|consensus 93.1 0.81 1.7E-05 48.2 10.6 114 269-399 48-162 (932)
327 KOG1310|consensus 92.8 0.53 1.2E-05 46.7 8.4 77 325-401 385-464 (758)
328 PF04910 Tcf25: Transcriptiona 92.8 1.2 2.5E-05 43.3 10.8 107 278-388 8-144 (360)
329 COG0790 FOG: TPR repeat, SEL1 92.7 3.1 6.7E-05 38.9 13.5 107 265-391 110-232 (292)
330 KOG1070|consensus 92.6 2.9 6.2E-05 46.5 14.1 82 315-396 1531-1614(1710)
331 TIGR03268 methan_mark_3 putati 92.5 0.49 1.1E-05 46.7 7.6 22 26-47 376-397 (503)
332 COG5191 Uncharacterized conser 92.4 0.28 6E-06 45.5 5.5 81 311-391 104-185 (435)
333 PF10952 DUF2753: Protein of u 92.3 1.5 3.2E-05 35.0 8.6 116 267-390 4-124 (140)
334 PF04781 DUF627: Protein of un 92.3 2.7 5.9E-05 33.0 10.1 85 320-404 2-100 (111)
335 KOG2047|consensus 92.0 8.2 0.00018 39.7 15.6 124 262-403 475-603 (835)
336 KOG0686|consensus 91.9 1.2 2.6E-05 42.9 9.2 112 265-389 151-278 (466)
337 PRK00969 hypothetical protein; 91.8 0.51 1.1E-05 46.7 6.9 22 26-47 379-400 (508)
338 PF10345 Cohesin_load: Cohesin 91.8 8.9 0.00019 40.1 16.7 110 263-372 300-428 (608)
339 PF08424 NRDE-2: NRDE-2, neces 91.7 7.3 0.00016 37.1 14.8 82 310-391 15-108 (321)
340 PF10516 SHNi-TPR: SHNi-TPR; 91.5 0.29 6.2E-06 30.5 3.2 30 315-344 2-31 (38)
341 PF15015 NYD-SP12_N: Spermatog 91.4 2.5 5.5E-05 41.0 10.9 56 352-407 232-287 (569)
342 PF04910 Tcf25: Transcriptiona 91.4 2.1 4.6E-05 41.5 10.8 82 264-346 40-135 (360)
343 PF10373 EST1_DNA_bind: Est1 D 91.3 0.8 1.7E-05 42.4 7.7 62 333-394 1-62 (278)
344 cd02681 MIT_calpain7_1 MIT: do 91.3 2.7 5.8E-05 30.7 8.7 36 261-296 3-38 (76)
345 KOG1550|consensus 91.3 2.1 4.4E-05 44.3 11.2 102 269-392 293-406 (552)
346 cd02678 MIT_VPS4 MIT: domain c 91.3 2.1 4.6E-05 31.1 8.3 38 261-298 3-40 (75)
347 TIGR02561 HrpB1_HrpK type III 91.2 2.9 6.2E-05 34.7 9.7 81 317-397 13-93 (153)
348 cd02656 MIT MIT: domain contai 90.8 3.2 7E-05 30.1 8.9 37 262-298 4-40 (75)
349 cd02677 MIT_SNX15 MIT: domain 90.8 3 6.4E-05 30.4 8.5 61 262-322 4-64 (75)
350 cd02684 MIT_2 MIT: domain cont 90.7 2 4.3E-05 31.3 7.5 37 262-298 4-40 (75)
351 PF13281 DUF4071: Domain of un 90.7 4.6 9.9E-05 39.2 12.1 43 348-390 305-347 (374)
352 PF07721 TPR_4: Tetratricopept 90.6 0.39 8.4E-06 26.9 3.0 24 349-372 2-25 (26)
353 smart00745 MIT Microtubule Int 90.5 3.3 7E-05 30.1 8.8 38 261-298 5-42 (77)
354 TIGR03504 FimV_Cterm FimV C-te 90.5 1 2.2E-05 29.0 5.2 25 352-376 3-27 (44)
355 COG3898 Uncharacterized membra 90.5 5.6 0.00012 38.4 12.1 105 273-387 197-301 (531)
356 COG3914 Spy Predicted O-linked 90.3 4.1 8.9E-05 41.3 11.6 106 270-391 73-185 (620)
357 COG3118 Thioredoxin domain-con 90.3 2.6 5.6E-05 39.1 9.5 83 320-402 140-256 (304)
358 TIGR02561 HrpB1_HrpK type III 90.2 8.1 0.00018 32.1 11.4 87 264-366 10-96 (153)
359 PF10255 Paf67: RNA polymerase 90.0 1.6 3.6E-05 42.6 8.6 134 270-411 128-265 (404)
360 PF09986 DUF2225: Uncharacteri 89.8 1.9 4.2E-05 38.4 8.4 92 262-356 116-208 (214)
361 KOG1550|consensus 89.8 2.7 5.8E-05 43.4 10.6 113 267-394 247-372 (552)
362 KOG0530|consensus 89.0 18 0.0004 33.1 13.9 108 276-399 55-164 (318)
363 PF07720 TPR_3: Tetratricopept 88.8 1.4 3E-05 27.0 4.6 33 315-347 2-36 (36)
364 KOG0292|consensus 88.6 7.9 0.00017 41.2 12.5 130 261-391 988-1127(1202)
365 COG4455 ImpE Protein of avirul 88.6 4.9 0.00011 35.7 9.5 71 322-392 9-79 (273)
366 PF14863 Alkyl_sulf_dimr: Alky 88.5 2.3 5E-05 35.2 7.2 51 348-398 70-120 (141)
367 KOG0529|consensus 88.4 6.8 0.00015 38.0 11.2 107 274-396 85-197 (421)
368 PF10345 Cohesin_load: Cohesin 88.4 13 0.00027 39.0 14.5 120 263-393 58-186 (608)
369 KOG2561|consensus 88.3 6.9 0.00015 38.2 11.1 111 261-376 160-295 (568)
370 PF13281 DUF4071: Domain of un 87.4 19 0.00042 34.9 13.8 86 313-398 140-233 (374)
371 COG4070 Predicted peptidyl-pro 87.4 1.2 2.6E-05 42.4 5.4 23 26-48 377-399 (512)
372 PF11817 Foie-gras_1: Foie gra 86.9 5.4 0.00012 36.5 9.5 64 268-341 182-245 (247)
373 COG3914 Spy Predicted O-linked 86.5 7 0.00015 39.6 10.5 72 320-391 73-145 (620)
374 cd02682 MIT_AAA_Arch MIT: doma 86.5 9.1 0.0002 27.8 8.5 40 352-391 10-56 (75)
375 KOG3617|consensus 86.5 8.4 0.00018 40.8 11.2 64 315-378 913-997 (1416)
376 cd02679 MIT_spastin MIT: domai 86.2 9.9 0.00021 28.0 8.6 39 260-298 4-42 (79)
377 PF10602 RPN7: 26S proteasome 86.1 21 0.00046 30.7 15.5 69 310-378 32-103 (177)
378 COG0652 PpiB Peptidyl-prolyl c 85.9 0.28 6E-06 41.3 0.4 22 106-127 36-57 (158)
379 KOG1839|consensus 85.8 6.3 0.00014 43.7 10.5 106 263-377 931-1044(1236)
380 PF10255 Paf67: RNA polymerase 85.8 1.5 3.3E-05 42.8 5.5 60 316-376 124-192 (404)
381 KOG2300|consensus 85.7 13 0.00028 37.0 11.5 100 264-372 46-151 (629)
382 KOG0529|consensus 85.4 36 0.00079 33.2 14.3 74 325-398 86-161 (421)
383 PF11817 Foie-gras_1: Foie gra 85.4 12 0.00026 34.2 11.0 83 281-373 155-243 (247)
384 KOG2047|consensus 85.3 41 0.00088 34.9 15.0 123 266-400 389-529 (835)
385 KOG1839|consensus 84.9 7.3 0.00016 43.2 10.5 109 262-378 971-1087(1236)
386 COG2909 MalT ATP-dependent tra 84.7 34 0.00073 36.7 14.7 109 263-378 414-527 (894)
387 cd09239 BRO1_HD-PTP_like Prote 84.4 33 0.00072 33.3 14.0 118 259-376 109-280 (361)
388 PF07721 TPR_4: Tetratricopept 84.2 1.3 2.8E-05 24.7 2.6 24 315-338 2-25 (26)
389 COG0790 FOG: TPR repeat, SEL1 83.6 17 0.00036 33.9 11.5 96 277-392 90-197 (292)
390 PF09670 Cas_Cas02710: CRISPR- 83.5 15 0.00034 35.9 11.4 100 264-377 131-270 (379)
391 KOG2422|consensus 83.5 16 0.00035 37.1 11.3 124 268-395 239-390 (665)
392 KOG0530|consensus 83.2 12 0.00026 34.2 9.5 86 326-411 55-141 (318)
393 KOG0879|consensus 82.8 0.51 1.1E-05 37.8 0.7 27 100-126 54-80 (177)
394 PF14863 Alkyl_sulf_dimr: Alky 82.7 4.2 9.1E-05 33.6 6.1 51 315-365 71-121 (141)
395 KOG1258|consensus 82.5 58 0.0013 33.4 14.9 110 264-389 297-407 (577)
396 KOG0881|consensus 82.5 0.46 9.9E-06 37.6 0.3 20 107-126 47-66 (164)
397 KOG1463|consensus 82.4 18 0.0004 34.3 10.6 123 264-399 209-335 (411)
398 PF10373 EST1_DNA_bind: Est1 D 82.1 12 0.00025 34.5 9.8 62 283-360 1-62 (278)
399 KOG2114|consensus 82.1 14 0.0003 39.2 10.6 33 263-295 367-399 (933)
400 KOG2581|consensus 81.7 30 0.00065 33.7 12.0 69 314-382 209-281 (493)
401 cd02680 MIT_calpain7_2 MIT: do 81.3 18 0.00038 26.3 8.1 34 263-296 5-38 (75)
402 COG5091 SGT1 Suppressor of G2 81.1 2.4 5.3E-05 38.5 4.4 53 329-381 54-112 (368)
403 TIGR02710 CRISPR-associated pr 81.0 25 0.00053 34.3 11.4 63 265-338 131-195 (380)
404 KOG3807|consensus 80.9 46 0.001 31.6 12.6 52 352-403 279-332 (556)
405 COG2912 Uncharacterized conser 80.8 7.1 0.00015 35.9 7.3 78 264-357 181-258 (269)
406 TIGR03504 FimV_Cterm FimV C-te 80.7 2.8 6E-05 27.0 3.4 27 317-343 2-28 (44)
407 PHA02537 M terminase endonucle 80.6 2.2 4.8E-05 38.4 4.0 116 275-396 94-225 (230)
408 PF04190 DUF410: Protein of un 80.5 24 0.00053 32.5 11.0 102 260-372 6-114 (260)
409 PF09205 DUF1955: Domain of un 80.5 16 0.00034 29.9 8.3 53 326-378 98-150 (161)
410 KOG0880|consensus 80.2 0.5 1.1E-05 40.7 -0.2 21 106-126 85-105 (217)
411 PRK15180 Vi polysaccharide bio 79.7 3.5 7.7E-05 40.7 5.3 61 320-380 363-423 (831)
412 PF11207 DUF2989: Protein of u 78.8 45 0.00099 29.3 14.8 118 282-400 59-196 (203)
413 PF07079 DUF1347: Protein of u 78.5 44 0.00095 33.2 12.1 101 265-376 7-107 (549)
414 KOG1497|consensus 78.3 62 0.0013 30.6 13.5 98 311-409 100-207 (399)
415 COG3629 DnrI DNA-binding trans 78.1 8.6 0.00019 35.7 7.1 64 264-343 153-216 (280)
416 smart00386 HAT HAT (Half-A-TPR 77.6 7.4 0.00016 22.1 4.6 30 362-391 1-30 (33)
417 KOG0985|consensus 77.5 45 0.00098 36.6 12.7 125 270-400 1054-1184(1666)
418 KOG0546|consensus 77.4 1.4 3E-05 41.7 1.8 80 267-362 278-357 (372)
419 PF08626 TRAPPC9-Trs120: Trans 77.4 45 0.00098 38.0 13.9 130 260-400 238-463 (1185)
420 COG3947 Response regulator con 77.2 8 0.00017 35.9 6.4 52 349-400 280-331 (361)
421 COG4649 Uncharacterized protei 76.9 48 0.001 28.6 11.7 99 266-376 96-195 (221)
422 PF11846 DUF3366: Domain of un 76.8 13 0.00029 32.3 7.9 52 330-382 127-178 (193)
423 PF08424 NRDE-2: NRDE-2, neces 76.8 17 0.00037 34.6 9.1 66 335-400 6-83 (321)
424 cd09240 BRO1_Alix Protein-inte 75.8 66 0.0014 31.0 12.9 117 260-376 115-283 (346)
425 cd09241 BRO1_ScRim20-like Prot 74.5 86 0.0019 30.3 14.6 117 260-376 102-265 (355)
426 KOG3783|consensus 74.4 31 0.00067 34.8 10.2 72 267-353 270-341 (546)
427 PF11207 DUF2989: Protein of u 74.2 14 0.00031 32.4 7.0 54 314-368 141-198 (203)
428 smart00745 MIT Microtubule Int 73.9 17 0.00036 26.3 6.5 17 360-376 20-36 (77)
429 KOG0111|consensus 73.4 1.5 3.3E-05 38.3 0.9 21 107-127 182-202 (298)
430 PF15469 Sec5: Exocyst complex 73.4 57 0.0012 28.1 10.8 27 362-388 153-179 (182)
431 PF04053 Coatomer_WDAD: Coatom 73.2 57 0.0012 32.7 12.0 33 345-377 344-376 (443)
432 KOG2041|consensus 73.1 1E+02 0.0022 32.4 13.5 32 310-341 792-823 (1189)
433 PRK15180 Vi polysaccharide bio 72.7 21 0.00045 35.6 8.4 102 269-386 294-395 (831)
434 COG4941 Predicted RNA polymera 72.1 21 0.00046 33.8 8.0 77 315-391 330-408 (415)
435 KOG0985|consensus 71.6 37 0.0008 37.2 10.4 106 267-396 1197-1327(1666)
436 PF03097 BRO1: BRO1-like domai 71.3 43 0.00093 32.6 10.7 118 259-376 102-267 (377)
437 KOG4459|consensus 70.9 38 0.00083 33.4 9.7 120 265-394 32-179 (471)
438 COG2909 MalT ATP-dependent tra 70.9 1E+02 0.0022 33.2 13.4 96 268-374 462-565 (894)
439 PF00244 14-3-3: 14-3-3 protei 70.7 18 0.00039 32.8 7.3 56 279-342 141-197 (236)
440 PF10579 Rapsyn_N: Rapsyn N-te 70.3 40 0.00088 24.8 7.9 60 318-377 10-72 (80)
441 cd09034 BRO1_Alix_like Protein 69.1 1E+02 0.0022 29.6 12.6 118 260-377 107-280 (345)
442 KOG4563|consensus 68.7 30 0.00066 33.1 8.3 69 259-335 36-104 (400)
443 KOG2041|consensus 67.3 32 0.0007 35.9 8.7 27 265-291 797-823 (1189)
444 KOG0890|consensus 66.7 41 0.00089 40.1 10.3 116 262-395 1668-1802(2382)
445 KOG3783|consensus 65.4 67 0.0014 32.6 10.3 67 316-382 451-525 (546)
446 KOG1914|consensus 65.3 51 0.0011 33.5 9.4 82 304-387 10-91 (656)
447 COG2015 Alkyl sulfatase and re 65.2 40 0.00087 33.6 8.6 52 350-401 454-505 (655)
448 KOG1914|consensus 63.8 39 0.00084 34.3 8.3 70 338-409 10-79 (656)
449 cd09244 BRO1_Rhophilin Protein 61.8 1.6E+02 0.0034 28.6 12.0 39 259-297 101-148 (350)
450 PF04212 MIT: MIT (microtubule 61.7 29 0.00063 24.5 5.5 25 352-376 9-33 (69)
451 PF01239 PPTA: Protein prenylt 60.4 26 0.00056 20.2 4.2 27 333-359 2-28 (31)
452 cd02656 MIT MIT: domain contai 60.3 47 0.001 23.8 6.5 15 362-376 20-34 (75)
453 KOG1464|consensus 60.1 25 0.00053 32.4 5.8 51 326-376 39-93 (440)
454 KOG3616|consensus 59.1 88 0.0019 33.1 10.1 48 324-373 742-790 (1636)
455 PF08238 Sel1: Sel1 repeat; I 58.7 24 0.00052 21.1 4.1 29 349-377 2-37 (39)
456 PF12854 PPR_1: PPR repeat 58.7 28 0.0006 20.7 4.2 26 347-372 6-31 (34)
457 cd02681 MIT_calpain7_1 MIT: do 58.6 65 0.0014 23.5 6.8 24 353-376 11-34 (76)
458 KOG0739|consensus 58.3 49 0.0011 31.1 7.5 35 260-294 6-40 (439)
459 PF04053 Coatomer_WDAD: Coatom 58.2 47 0.001 33.2 8.1 28 314-341 347-374 (443)
460 PF10952 DUF2753: Protein of u 57.9 50 0.0011 26.6 6.4 83 317-399 4-110 (140)
461 cd09243 BRO1_Brox_like Protein 57.2 1.9E+02 0.0041 28.0 14.7 118 259-376 104-276 (353)
462 COG5191 Uncharacterized conser 56.6 11 0.00024 35.3 3.1 77 267-359 110-190 (435)
463 smart00671 SEL1 Sel1-like repe 55.6 30 0.00064 20.2 4.1 29 349-377 2-34 (36)
464 PF08969 USP8_dimer: USP8 dime 55.5 35 0.00077 26.9 5.6 41 255-295 29-69 (115)
465 COG5107 RNA14 Pre-mRNA 3'-end 55.0 52 0.0011 32.7 7.4 64 310-376 298-361 (660)
466 COG4455 ImpE Protein of avirul 54.5 40 0.00086 30.2 6.0 64 270-349 7-70 (273)
467 cd09242 BRO1_ScBro1_like Prote 54.3 1.2E+02 0.0027 29.2 10.1 28 350-377 246-273 (348)
468 PRK13184 pknD serine/threonine 54.1 83 0.0018 34.7 9.6 67 316-384 554-627 (932)
469 KOG0890|consensus 54.0 4.1E+02 0.0088 32.5 15.1 68 309-378 1665-1732(2382)
470 cd09248 BRO1_Rhophilin_1 Prote 54.0 2.2E+02 0.0049 27.8 12.9 76 259-334 101-185 (384)
471 PF12739 TRAPPC-Trs85: ER-Golg 53.8 1.9E+02 0.0042 28.6 11.7 102 266-377 210-329 (414)
472 cd02683 MIT_1 MIT: domain cont 53.5 85 0.0019 22.8 8.7 18 366-383 31-48 (77)
473 PF01535 PPR: PPR repeat; Int 52.7 23 0.00049 19.8 3.1 25 317-341 3-27 (31)
474 PF12854 PPR_1: PPR repeat 52.5 29 0.00063 20.6 3.6 26 314-339 7-32 (34)
475 COG3014 Uncharacterized protei 52.4 2.2E+02 0.0048 27.3 12.5 113 261-380 122-245 (449)
476 PF08311 Mad3_BUB1_I: Mad3/BUB 52.3 1.2E+02 0.0027 24.3 9.9 85 278-375 40-126 (126)
477 KOG2396|consensus 52.3 2.7E+02 0.0058 28.3 13.7 78 330-407 87-164 (568)
478 KOG0889|consensus 52.0 1.8E+02 0.0039 36.7 12.2 87 311-398 2809-2903(3550)
479 PF07219 HemY_N: HemY protein 51.6 57 0.0012 25.4 6.1 36 258-293 53-88 (108)
480 cd02677 MIT_SNX15 MIT: domain 50.9 93 0.002 22.5 7.7 46 362-411 20-72 (75)
481 PF12903 DUF3830: Protein of u 50.6 16 0.00035 30.3 2.9 36 25-73 8-43 (147)
482 PF05053 Menin: Menin; InterP 49.8 1.1E+02 0.0024 31.3 9.0 52 345-396 315-372 (618)
483 PF04010 DUF357: Protein of un 49.7 63 0.0014 23.5 5.5 38 257-294 28-65 (75)
484 smart00101 14_3_3 14-3-3 homol 49.4 69 0.0015 29.2 7.0 55 280-342 144-199 (244)
485 PF12753 Nro1: Nuclear pore co 48.9 29 0.00063 33.7 4.7 33 345-377 347-391 (404)
486 PF13041 PPR_2: PPR repeat fam 48.6 71 0.0015 20.5 5.8 28 316-343 5-32 (50)
487 KOG2422|consensus 46.6 3.5E+02 0.0076 28.0 12.4 59 316-374 344-404 (665)
488 KOG3807|consensus 46.6 2.7E+02 0.0059 26.7 11.9 58 314-371 275-334 (556)
489 PF02184 HAT: HAT (Half-A-TPR) 46.6 40 0.00086 20.1 3.3 26 329-355 2-27 (32)
490 KOG1497|consensus 46.0 2.7E+02 0.0059 26.5 13.7 105 263-376 102-212 (399)
491 PRK15490 Vi polysaccharide bio 45.9 3.6E+02 0.0077 28.1 12.1 63 313-380 41-103 (578)
492 KOG0885|consensus 45.8 12 0.00026 35.7 1.6 49 106-162 49-97 (439)
493 KOG3616|consensus 45.8 88 0.0019 33.1 7.7 64 313-376 823-910 (1636)
494 cd09245 BRO1_UmRIM23-like Prot 45.7 3.2E+02 0.0068 27.2 12.3 30 348-377 296-325 (413)
495 cd09246 BRO1_Alix_like_1 Prote 45.3 2.9E+02 0.0064 26.7 14.6 117 260-376 107-275 (353)
496 KOG0883|consensus 45.2 7.9 0.00017 37.0 0.3 20 107-126 315-334 (518)
497 PF12652 CotJB: CotJB protein; 45.0 1.1E+02 0.0023 22.5 6.1 51 358-412 5-55 (78)
498 KOG2114|consensus 44.6 1.2E+02 0.0026 32.5 8.6 31 313-343 367-397 (933)
499 PF02064 MAS20: MAS20 protein 43.9 62 0.0013 26.0 5.2 36 257-292 56-91 (121)
500 TIGR00756 PPR pentatricopeptid 43.9 48 0.001 18.7 3.7 25 317-341 3-27 (35)
No 1
>KOG0546|consensus
Probab=100.00 E-value=1.6e-77 Score=541.64 Aligned_cols=362 Identities=44% Similarity=0.684 Sum_probs=327.2
Q ss_pred ccccCCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCC-CCCcccccCCCcceEEeccceeccCCcc
Q psy793 4 SICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKG-KLGKALHFTGSRFHRIIPQFMIQGGDIT 82 (414)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~-~~~~~~~y~~~~f~rv~~~~~iq~G~~~ 82 (414)
......||+|||||+|++.+.||||||||.|.||+||+||+.||+|..|.+ ..++.+.|+|+.|||||++|||||||++
T Consensus 2 ~~~~~~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs 81 (372)
T KOG0546|consen 2 GMSVRTNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFS 81 (372)
T ss_pred CcccCCCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccc
Confidence 344558999999999999999999999999999999999999999999864 6689999999999999999999999999
Q ss_pred ccCCCCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCC
Q psy793 83 NFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTG 162 (414)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~ 162 (414)
.++| +||.||||..|+||+|.++|+.+++|||||.|
T Consensus 82 ~gnG--------------------------------------------tGGeSIYG~~FdDEnF~lKHdrpflLSMAN~G 117 (372)
T KOG0546|consen 82 EGNG--------------------------------------------TGGESIYGEKFDDENFELKHDRPFLLSMANRG 117 (372)
T ss_pred cCCC--------------------------------------------CCcccccccccccccceeccCcchhhhhhcCC
Confidence 8887 77889999999999999999999999999999
Q ss_pred CCCCccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccCC-CCccccEEEEcCCCCCCC----CCcCcccCCCC
Q psy793 163 HPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAEN-DKPLVTCTITNSGQLSLN----EDWGVAENDGS 237 (414)
Q Consensus 163 ~~~~~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~-~~P~~~i~I~~~g~l~~~----~~~~i~~~~~~ 237 (414)
|||||||||||+.++|||||+|+|||+||+|++||+.|+.+.++. .+|..+|+|.+||+|... ..+.+...+..
T Consensus 118 -pNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~~dV~I~dCGel~~~~~~~~~~~a~~~~~s 196 (372)
T KOG0546|consen 118 -PNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPLADVVISDCGELVKKSKVKEDAGASEPDET 196 (372)
T ss_pred -CCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCccceEecccccccccccccccccCCCCCCC
Confidence 999999999999999999999999999999999999999999854 479999999999999988 66777788999
Q ss_pred CCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHH--H-HHhhHHHHH
Q psy793 238 QDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKT--Q-QKHFRSYYT 314 (414)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~--~-~~~~~~~~~ 314 (414)
++.++++|.++.. ...-+.....+.+...++.|+..|++++|..|...|.++++++.........+ + ...+.....
T Consensus 197 gd~~~d~p~~~~~-~~~~~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~ 275 (372)
T KOG0546|consen 197 GDSYEDYPKDDRS-WDDKDFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRF 275 (372)
T ss_pred CCccccccccccc-ccccccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhccccccccccccccccccccccc
Confidence 9999999977522 12223566777888999999999999999999999999999987522221111 1 334566777
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy793 315 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ 394 (414)
Q Consensus 315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 394 (414)
.++.|++.|-++++.+..|+..+..+++.++...++||+++++++.+.++++|+++++.+....|++..+...+..+...
T Consensus 276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~ 355 (372)
T KOG0546|consen 276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK 355 (372)
T ss_pred ccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhc
Q psy793 395 MRHHLNLEKMTYARMFQ 411 (414)
Q Consensus 395 ~~~~~~~~k~~~~~~f~ 411 (414)
+.++++++++.+.+||+
T Consensus 356 ~~~~~~~~~~~~~k~~s 372 (372)
T KOG0546|consen 356 KKQYNRKQKKALSKMFS 372 (372)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 99999999999999985
No 2
>KOG0880|consensus
Probab=100.00 E-value=8.4e-52 Score=342.25 Aligned_cols=169 Identities=57% Similarity=0.925 Sum_probs=157.9
Q ss_pred CCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhh-cCCCCCCCCcccccCCCcceEEeccceeccCCccccCCC
Q psy793 9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCT-GEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGT 87 (414)
Q Consensus 9 ~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~-~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~ 87 (414)
--..|||||.+++.+.|||+|+||+..+|+||+||..||. +..+.| |.|+.||||||+|||||||++.+++
T Consensus 38 vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~g-------Y~gS~FhRVi~nfmIQGGd~t~g~g- 109 (217)
T KOG0880|consen 38 VTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYG-------YKGSKFHRVIPNFMIQGGDFTKGDG- 109 (217)
T ss_pred ceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcc-------cCCceeeeeecCceeecCccccCCC-
Confidence 3458999999999999999999999999999999999999 555555 9999999999999999999998777
Q ss_pred CCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCCc
Q psy793 88 GGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTN 167 (414)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~ 167 (414)
+|+.|+||++|+||++.|+|+++|.||||+.| |++|
T Consensus 110 -------------------------------------------tGg~SIyG~~F~DENf~LkH~rpG~lSMAn~G-pDtN 145 (217)
T KOG0880|consen 110 -------------------------------------------TGGKSIYGEKFPDENFKLKHDRPGRLSMANAG-PDTN 145 (217)
T ss_pred -------------------------------------------CCCeEeecCCCCCccceeecCCCceEeeeccC-CCCC
Confidence 67778999999999999999999999999999 9999
Q ss_pred cchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcCCCCCCCCCc
Q psy793 168 NSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNSGQLSLNEDW 229 (414)
Q Consensus 168 ~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~g~l~~~~~~ 229 (414)
|||||||+..+|||||+|+|||+|++||++|.+|+.+++ ..++|+++++|.+||.+......
T Consensus 146 GsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e~v~I~~~g~l~~~~~~ 208 (217)
T KOG0880|consen 146 GSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLEDVVIANCGELPVEYLE 208 (217)
T ss_pred CceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCccccEEEeecCcccccchh
Confidence 999999999999999999999999999999999999998 67899999999999998765443
No 3
>KOG0879|consensus
Probab=100.00 E-value=1.7e-50 Score=312.68 Aligned_cols=173 Identities=52% Similarity=0.863 Sum_probs=161.1
Q ss_pred ccccCCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccc
Q psy793 4 SICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITN 83 (414)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~ 83 (414)
+...+.||.||||+++++.+.|||.||||.|.+|+|++||++.|+|++- ..++..-|+++.|||||++|||||||...
T Consensus 4 ~~r~~~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r--~~g~PiGYK~~tFHRvIkdFMiQgGDFv~ 81 (177)
T KOG0879|consen 4 QLRSPNNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYR--KDGVPIGYKNSTFHRVIKDFMIQGGDFVN 81 (177)
T ss_pred cccCCCCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccc--cCCccccccccchHHHhhhheeccCceec
Confidence 3445679999999999999999999999999999999999999999883 33466779999999999999999999998
Q ss_pred cCCCCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCC
Q psy793 84 FNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGH 163 (414)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~ 163 (414)
++| +|-.|+||.+|+||++.++|+.+|+||||++|
T Consensus 82 gDG--------------------------------------------tG~~sIy~~~F~DENFtlkH~~PGlLSMANsG- 116 (177)
T KOG0879|consen 82 GDG--------------------------------------------TGVASIYGSTFPDENFTLKHDGPGLLSMANSG- 116 (177)
T ss_pred CCC--------------------------------------------ceEEEEcCCCCCCcceeeecCCCceeeccccC-
Confidence 777 66778999999999999999999999999999
Q ss_pred CCCccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcCCCC
Q psy793 164 PNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNSGQL 223 (414)
Q Consensus 164 ~~~~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~g~l 223 (414)
+++||.|||||...+.+|||+|+|||||++|+.++++|+.+++ .+++|..+|.|..||.+
T Consensus 117 ~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPKl~v~i~qCGem 177 (177)
T KOG0879|consen 117 KDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPKLPVVIVQCGEM 177 (177)
T ss_pred CCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCCCcEEEeecccC
Confidence 9999999999999999999999999999999999999999998 78999999999999863
No 4
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=7.2e-46 Score=330.05 Aligned_cols=174 Identities=34% Similarity=0.544 Sum_probs=155.6
Q ss_pred CCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCC-CCCcccccCCCcceEEecc-ceeccCCccccC
Q psy793 8 EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKG-KLGKALHFTGSRFHRIIPQ-FMIQGGDITNFN 85 (414)
Q Consensus 8 ~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~-~~~~~~~y~~~~f~rv~~~-~~iq~G~~~~~~ 85 (414)
..+++|||||++++++.|+|+||||.|.||+||+||++||+|..+.+ ..+...+|+|+.||||+++ ||||+||+.+
T Consensus 50 ~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~-- 127 (249)
T PTZ00221 50 QNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS-- 127 (249)
T ss_pred CCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC--
Confidence 45889999999999999999999999999999999999999887654 2344566999999999986 8999999852
Q ss_pred CCCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCC
Q psy793 86 GTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPN 165 (414)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~ 165 (414)
.+.++||..|++|.+.++|+.+|+|+|++.+ |+
T Consensus 128 ----------------------------------------------~g~s~~G~~f~dE~~~~~h~~~G~LsMan~G-pn 160 (249)
T PTZ00221 128 ----------------------------------------------FNVSSTGTPIADEGYRHRHTERGLLTMISEG-PH 160 (249)
T ss_pred ----------------------------------------------CCccCCCCcccCccccccCCCCCEEEeCcCC-CC
Confidence 1235667889999989999999999999999 99
Q ss_pred CccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcCCCCCCCCCcC
Q psy793 166 TNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNSGQLSLNEDWG 230 (414)
Q Consensus 166 ~~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~g~l~~~~~~~ 230 (414)
++|||||||++++|+|||+|+|||+|++||++|++|+++++ ..++|..+|+|..||++..+.+.+
T Consensus 161 tngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~grP~~~V~I~~Cgvl~~~~p~~ 226 (249)
T PTZ00221 161 TSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVSFCGALTGEKPPG 226 (249)
T ss_pred CccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCCCCCCeEEEECeEecCCCCCc
Confidence 99999999999999999999999999999999999999987 578999999999999998775543
No 5
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=1.1e-45 Score=319.99 Aligned_cols=171 Identities=58% Similarity=0.930 Sum_probs=154.8
Q ss_pred cCCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCC
Q psy793 7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNG 86 (414)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~ 86 (414)
...||+||||+++++++.|+|+||||.+.||+||+||++||+|....+ .++.++|+||.||||+|+|+|||||+...++
T Consensus 12 ~~~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~-~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g 90 (183)
T PTZ00060 12 MSKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGS-SGKNLHYKGSIFHRIIPQFMCQGGDITNHNG 90 (183)
T ss_pred cCCCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccc-cCcccccCCeEEEEEcCCCeEEeCCccCCCC
Confidence 345899999999999999999999999999999999999998765422 4567899999999999999999999875444
Q ss_pred CCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCC
Q psy793 87 TGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNT 166 (414)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~ 166 (414)
.++.++||..+++|...++|+.+|+|+|++.+ +++
T Consensus 91 --------------------------------------------~~g~~~~g~~~~~e~~~~~h~~~G~lsma~~g-~~~ 125 (183)
T PTZ00060 91 --------------------------------------------TGGESIYGRKFTDENFKLKHDQPGLLSMANAG-PNT 125 (183)
T ss_pred --------------------------------------------CCCCcccccccCCccccccCCCCCEEEeccCC-CCC
Confidence 45566778888888888899889999999998 999
Q ss_pred ccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccCCCCccccEEEEcCCCC
Q psy793 167 NNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223 (414)
Q Consensus 167 ~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~~~P~~~i~I~~~g~l 223 (414)
++||||||++++|+||++|+|||+|++||+||++|+.+++..++|..+|+|.+||++
T Consensus 126 ~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~~~~P~~~v~I~~cg~~ 182 (183)
T PTZ00060 126 NGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYPKKPVVVTDCGEL 182 (183)
T ss_pred CcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCCCCCCcCCeEEEEeEEc
Confidence 999999999999999999999999999999999999998888899999999999986
No 6
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=2.4e-45 Score=313.81 Aligned_cols=164 Identities=60% Similarity=0.967 Sum_probs=148.4
Q ss_pred cEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCc
Q psy793 11 YIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGE 90 (414)
Q Consensus 11 ~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~ 90 (414)
|+||||+.+++++.|+|+||||.+.||+||+||++||++..+.+. +..+|+++.||||+|+|+|||||+...++
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~--~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g---- 74 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGG--KPFGYKGSTFHRVIPDFMIQGGDFTRGNG---- 74 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcc--cccccCCCEEEEEeCCcEEEcCCccCCCC----
Confidence 689999999999999999999999999999999999987543322 34579999999999999999999875444
Q ss_pred cccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCCccch
Q psy793 91 SIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQ 170 (414)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~~sq 170 (414)
.++.++||..+++|...++|+.+|+|+|++.+ |++++||
T Consensus 75 ----------------------------------------~~~~~~~g~~~~~e~~~~~h~~~G~lsma~~~-~~~~~sq 113 (164)
T cd01926 75 ----------------------------------------TGGKSIYGEKFPDENFKLKHTGPGLLSMANAG-PNTNGSQ 113 (164)
T ss_pred ----------------------------------------CCCCcccCCccCCCCccccCCCccEEEeeECC-CCCcccE
Confidence 44566778888888888899899999999998 9999999
Q ss_pred hhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccCCCCccccEEEEcCC
Q psy793 171 FFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSG 221 (414)
Q Consensus 171 f~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~~~P~~~i~I~~~g 221 (414)
||||++++|+||++|+|||+|++||+||++|+++++.+++|..+|+|..||
T Consensus 114 FfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~~~~P~~~i~I~~cG 164 (164)
T cd01926 114 FFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKKVVIADCG 164 (164)
T ss_pred EEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCCCCCCcCCeEEEECC
Confidence 999999999999999999999999999999999998888999999999997
No 7
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=7e-45 Score=315.24 Aligned_cols=170 Identities=52% Similarity=0.870 Sum_probs=150.9
Q ss_pred cCCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCC
Q psy793 7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNG 86 (414)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~ 86 (414)
...||+||||+++++++.|+|+||||.+.||+||+||++||++++.. .+....|++|.||||+++|+|||||+..+++
T Consensus 15 ~~~~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~--~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g 92 (186)
T PLN03149 15 NPKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRK--AGLPQGYKGCQFHRVIKDFMIQGGDFLKGDG 92 (186)
T ss_pred CCCCCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccc--cCcccccCCcEEEEEcCCcEEEcCCcccCCC
Confidence 34588999999999999999999999999999999999999886521 1122349999999999999999999865555
Q ss_pred CCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCC
Q psy793 87 TGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNT 166 (414)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~ 166 (414)
.++.++||..+++|.+.++|+.+|+|+|++.+ +++
T Consensus 93 --------------------------------------------~g~~~~~g~~f~~e~~~~~h~~~G~lsma~~g-~~s 127 (186)
T PLN03149 93 --------------------------------------------TGCVSIYGSKFEDENFIAKHTGPGLLSMANSG-PNT 127 (186)
T ss_pred --------------------------------------------CCcccccCCccCCcccccccCCCCEEEEeeCC-CCC
Confidence 45566778888888888899999999999999 999
Q ss_pred ccchhhhhcCCCCCCCCcceeeEEEE-echHHHHHHhcccc-CCCCccccEEEEcCCCC
Q psy793 167 NNSQFFITLAPCPHLDGKNVVFGCVR-QGFGVAREVSYVEA-ENDKPLVTCTITNSGQL 223 (414)
Q Consensus 167 ~~sqf~it~~~~p~ld~~~~vfG~V~-~G~~vv~~i~~~~~-~~~~P~~~i~I~~~g~l 223 (414)
++||||||+.++|+||++|+|||+|+ +||++|++|+++++ ..++|..+|+|..||++
T Consensus 128 ~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~i~I~~cG~~ 186 (186)
T PLN03149 128 NGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECGEM 186 (186)
T ss_pred cccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCCeEEEeCEeC
Confidence 99999999999999999999999999 79999999999998 67899999999999974
No 8
>KOG0881|consensus
Probab=100.00 E-value=5.9e-46 Score=284.04 Aligned_cols=156 Identities=46% Similarity=0.720 Sum_probs=141.6
Q ss_pred cccCCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCcccc
Q psy793 5 ICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNF 84 (414)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~ 84 (414)
++.-..|.|.++++. |.|++|||-..||+||.||..|+ +.+||+|+.|||||++||||||||+.
T Consensus 4 ~~~~q~~~V~LeTsm-----G~i~~ElY~kHaP~TC~NF~eLa----------rrgYYn~v~FHRii~DFmiQGGDPTG- 67 (164)
T KOG0881|consen 4 PPEWQPPNVTLETSM-----GKITLELYWKHAPRTCQNFAELA----------RRGYYNGVIFHRIIKDFMIQGGDPTG- 67 (164)
T ss_pred CccCCCCeEEEeecc-----cceehhhhhhcCcHHHHHHHHHH----------hcccccceeeeehhhhheeecCCCCC-
Confidence 344556789998887 99999999999999999999999 45569999999999999999999973
Q ss_pred CCCCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCC-cccccccccceeeeccCCC
Q psy793 85 NGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE-NFKLKHKFEGQLSLANTGH 163 (414)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e-~~~~~~~~~g~l~~~~~~~ 163 (414)
.| .||.|+||..|+|| ..+|+|...|.|+|||.|
T Consensus 68 TG--------------------------------------------RGGaSIYG~kF~DEi~~dLkhTGAGILsMANaG- 102 (164)
T KOG0881|consen 68 TG--------------------------------------------RGGASIYGDKFEDEIHSDLKHTGAGILSMANAG- 102 (164)
T ss_pred CC--------------------------------------------CCccccccchhhhhhhhhhcccchhhhhhhccC-
Confidence 34 77889999999998 568999999999999999
Q ss_pred CCCccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcCC
Q psy793 164 PNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNSG 221 (414)
Q Consensus 164 ~~~~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~g 221 (414)
|++|||||||||.+.|+|||+||+||||..||+|+.++..+++ ..++|+.+++|...-
T Consensus 103 PnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIika~ 161 (164)
T KOG0881|consen 103 PNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKIIKAY 161 (164)
T ss_pred CCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeEeee
Confidence 9999999999999999999999999999999999999999998 568999999998753
No 9
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-44 Score=298.25 Aligned_cols=145 Identities=45% Similarity=0.729 Sum_probs=124.3
Q ss_pred CCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCC
Q psy793 20 GEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFED 99 (414)
Q Consensus 20 ~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~ 99 (414)
.+|+.|+|+|+||++.||+||+||++||+ .+||+|+.|||||++||||||||...++.
T Consensus 4 ~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~----------~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~------------ 61 (158)
T COG0652 4 LETNKGDITIELYPDKAPKTVANFLQLVK----------EGFYDGTIFHRVIPGFMIQGGDPTGGDGT------------ 61 (158)
T ss_pred eeccCCCEEEEECCCcCcHHHHHHHHHHH----------cCCCCCceEEEeecCceeecCCCCCCCCC------------
Confidence 46778999999999999999999999995 55699999999999999999999865453
Q ss_pred CcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccc--cceeeeccCCCCCCccchhhhhcCC
Q psy793 100 ENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKF--EGQLSLANTGHPNTNNSQFFITLAP 177 (414)
Q Consensus 100 ~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~--~g~l~~~~~~~~~~~~sqf~it~~~ 177 (414)
++. +..+++|.+...|+. +|+|||||+++|+||+||||||+.+
T Consensus 62 --------------------------------gg~---~~~f~~E~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~ 106 (158)
T COG0652 62 --------------------------------GGP---GPPFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVD 106 (158)
T ss_pred --------------------------------CCC---CCCCcccccccccccCCcceEeEcccCCcCCccCeEEEEecC
Confidence 333 366888877766666 9999999999999999999999999
Q ss_pred CCCCCCcceeeEEEEechHHHHHHhccccCC-----CCccccEEEEcCC
Q psy793 178 CPHLDGKNVVFGCVRQGFGVAREVSYVEAEN-----DKPLVTCTITNSG 221 (414)
Q Consensus 178 ~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~-----~~P~~~i~I~~~g 221 (414)
.|+||++|+|||+|++|||+|++|++..+.. +.|..+++|.+..
T Consensus 107 ~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~~~~ 155 (158)
T COG0652 107 NPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVK 155 (158)
T ss_pred CcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEeeee
Confidence 9999999999999999999999999987632 4455666666543
No 10
>KOG0111|consensus
Probab=100.00 E-value=2.5e-44 Score=301.84 Aligned_cols=164 Identities=54% Similarity=0.888 Sum_probs=158.6
Q ss_pred CCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCC
Q psy793 8 EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGT 87 (414)
Q Consensus 8 ~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~ 87 (414)
..||.||+++.|++...|||+++|..|..|.|++||..||+|+.|+| |.|++||||||.||.||||++.++|
T Consensus 134 ~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg-------ykgssfhriip~fmcqggdftn~ng- 205 (298)
T KOG0111|consen 134 MENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFG-------YKGSSFHRIIPKFMCQGGDFTNGNG- 205 (298)
T ss_pred hhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccC-------ccccchhhhhhhhhccCCccccCCC-
Confidence 45899999999999999999999999999999999999999999998 9999999999999999999998877
Q ss_pred CCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCCc
Q psy793 88 GGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTN 167 (414)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~ 167 (414)
+||.|+||..|+||++.|+|.-+|+|+||++| +++|
T Consensus 206 -------------------------------------------tggksiygkkfddenf~lkht~pgtlsmansg-antn 241 (298)
T KOG0111|consen 206 -------------------------------------------TGGKSIYGKKFDDENFTLKHTMPGTLSMANSG-ANTN 241 (298)
T ss_pred -------------------------------------------CCCcccccccccccceeeecCCCceeeccccC-CCCC
Confidence 77888999999999999999999999999999 9999
Q ss_pred cchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccCCCCccccEEEEcCCCC
Q psy793 168 NSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223 (414)
Q Consensus 168 ~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~~~P~~~i~I~~~g~l 223 (414)
|||||||+..+.+|||+|+|||.|++|++||+.+++..+.++.|...|.|..||.+
T Consensus 242 gsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsksgkp~qkv~i~~cge~ 297 (298)
T KOG0111|consen 242 GSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKSGKPQQKVKIVECGEI 297 (298)
T ss_pred CceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCCCCcceEEEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999986
No 11
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=1.9e-41 Score=284.31 Aligned_cols=143 Identities=48% Similarity=0.726 Sum_probs=128.7
Q ss_pred CeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCC
Q psy793 21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE 100 (414)
Q Consensus 21 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~ 100 (414)
+|+.|+|+||||++.||+||+||++||++++ |+++.||||+|+|+|||||+. +++
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~----------Y~~~~f~Rvi~~f~iq~Gd~~-~~g-------------- 57 (148)
T cd01927 3 HTTKGDIHIRLFPEEAPKTVENFTTHARNGY----------YNNTIFHRVIKGFMIQTGDPT-GDG-------------- 57 (148)
T ss_pred EeccccEEEEEeCCCCcHHHHHHHHHhhcCC----------cCCcEEEEEcCCcEEEecccC-CCC--------------
Confidence 5678999999999999999999999996554 999999999999999999985 233
Q ss_pred cccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcc-cccccccceeeeccCCCCCCccchhhhhcCCCC
Q psy793 101 NFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENF-KLKHKFEGQLSLANTGHPNTNNSQFFITLAPCP 179 (414)
Q Consensus 101 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~-~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~~p 179 (414)
.++.++|+..+++|.. .++|..+|+|+|++.+ |++++||||||++++|
T Consensus 58 ------------------------------~g~~~~~~~~~~~e~~~~~~h~~~G~l~ma~~~-~~s~~SqFfIt~~~~p 106 (148)
T cd01927 58 ------------------------------TGGESIWGKEFEDEFSPSLKHDRPYTLSMANAG-PNTNGSQFFITTVATP 106 (148)
T ss_pred ------------------------------CCCCcccCCccccccccccCcCCCeEEEEeeCC-CCCCCceEEEEcCCCc
Confidence 4555677888888864 7889889999999998 9999999999999999
Q ss_pred CCCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEc
Q psy793 180 HLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITN 219 (414)
Q Consensus 180 ~ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~ 219 (414)
+||++|+|||+|++||++|++|+++++ .+++|..+|+|.+
T Consensus 107 ~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~ 147 (148)
T cd01927 107 WLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN 147 (148)
T ss_pred ccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence 999999999999999999999999997 5689999999975
No 12
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=3.2e-41 Score=286.32 Aligned_cols=151 Identities=44% Similarity=0.675 Sum_probs=134.8
Q ss_pred eeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCCc
Q psy793 22 EKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN 101 (414)
Q Consensus 22 ~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~~ 101 (414)
|+.|+|+||||++.||+||+||++||+.+ ||+|+.||||+|+|+|||||+. +++
T Consensus 6 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g----------~Y~~~~f~rv~~~~~iq~Gd~~-~~g--------------- 59 (159)
T cd01923 6 TNKGDLNLELHCDKAPKACENFIKLCKKG----------YYDGTIFHRSIRNFMIQGGDPT-GTG--------------- 59 (159)
T ss_pred EccccEEEEEeCCCChHHHHHHHHHHhcC----------ccCCcEEEEEeCCcEEEecccC-CCC---------------
Confidence 56699999999999999999999999654 5999999999999999999985 233
Q ss_pred ccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCc-ccccccccceeeeccCCCCCCccchhhhhcCCCCC
Q psy793 102 FKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN-FKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPH 180 (414)
Q Consensus 102 ~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~-~~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~~p~ 180 (414)
.++.++||..+++|. ..++|+.+|+|+|++++ +++++||||||++++|+
T Consensus 60 -----------------------------~~~~~~~g~~~~~E~~~~~~h~~~G~v~ma~~~-~~s~~sqFfIt~~~~~~ 109 (159)
T cd01923 60 -----------------------------RGGESIWGKPFKDEFKPNLSHDGRGVLSMANSG-PNTNGSQFFITYRSCKH 109 (159)
T ss_pred -----------------------------CCCccccCCccCcccccCcCcCCCcEEEEeeCC-CCCcccEEEEECCCCcc
Confidence 456677888888884 46788899999999999 99999999999999999
Q ss_pred CCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcCCCCCCCCC
Q psy793 181 LDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNSGQLSLNED 228 (414)
Q Consensus 181 ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~g~l~~~~~ 228 (414)
||++|+|||+|++||++|++|+++++ .+++|+.+|+|.+|.++..+++
T Consensus 110 Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~dpf~ 158 (159)
T cd01923 110 LDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFVDPFE 158 (159)
T ss_pred cCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEeCCCC
Confidence 99999999999999999999999987 5789999999999998876543
No 13
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=2.9e-41 Score=284.49 Aligned_cols=144 Identities=49% Similarity=0.755 Sum_probs=129.3
Q ss_pred CeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCC
Q psy793 21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE 100 (414)
Q Consensus 21 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~ 100 (414)
+|+.|+|+||||++.||+||+||++||++++ |+|+.||||+|+|+|||||+. +++
T Consensus 6 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~----------Y~~~~f~rv~~~f~iq~Gd~~-~~g-------------- 60 (153)
T cd01928 6 HTNLGDIKIELFCDDCPKACENFLALCASGY----------YNGCIFHRNIKGFMVQTGDPT-GTG-------------- 60 (153)
T ss_pred EEccccEEEEEcCCCCcHHHHHHHHHHhcCc----------cCCcEEEEeCCCCEEEccccC-CCC--------------
Confidence 4667999999999999999999999996654 999999999999999999985 233
Q ss_pred cccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcc-cccccccceeeeccCCCCCCccchhhhhcCCCC
Q psy793 101 NFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENF-KLKHKFEGQLSLANTGHPNTNNSQFFITLAPCP 179 (414)
Q Consensus 101 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~-~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~~p 179 (414)
.++.++||..+++|.. .++|+++|+|+|++++ |++++||||||++++|
T Consensus 61 ------------------------------~g~~~~~~~~~~~e~~~~~~~~~~G~v~ma~~~-~~~~~SqFfI~~~~~~ 109 (153)
T cd01928 61 ------------------------------KGGESIWGKKFEDEFRETLKHDSRGVVSMANNG-PNTNGSQFFITYAKQP 109 (153)
T ss_pred ------------------------------CCCCccCCCccccccccCCCcCCCcEEEEeeCC-CCCcccEEEEEeCCCc
Confidence 4455677888888864 5788899999999998 9999999999999999
Q ss_pred CCCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcC
Q psy793 180 HLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNS 220 (414)
Q Consensus 180 ~ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~ 220 (414)
+||++|+|||+|++||++|++|+++++ ..++|..+|+|.++
T Consensus 110 ~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~ 151 (153)
T cd01928 110 HLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDV 151 (153)
T ss_pred ccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEe
Confidence 999999999999999999999999998 57899999999876
No 14
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=3.5e-41 Score=281.73 Aligned_cols=142 Identities=49% Similarity=0.798 Sum_probs=127.7
Q ss_pred CeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCC
Q psy793 21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE 100 (414)
Q Consensus 21 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~ 100 (414)
+|+.|+|+||||.+.||+||+||++||+++ ||+++.||||+|+|+|||||+. +++
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g----------~Y~~~~f~Rvi~~f~iq~Gd~~-~~g-------------- 57 (146)
T cd01922 3 ETTMGEITLELYWNHAPKTCKNFYELAKRG----------YYNGTIFHRLIKDFMIQGGDPT-GTG-------------- 57 (146)
T ss_pred EeccccEEEEEcCCCCcHHHHHHHHHHhcC----------CcCCcEEEEEcCCcEEEecccC-CCC--------------
Confidence 577899999999999999999999999655 4999999999999999999985 233
Q ss_pred cccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCc-ccccccccceeeeccCCCCCCccchhhhhcCCCC
Q psy793 101 NFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN-FKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCP 179 (414)
Q Consensus 101 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~-~~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~~p 179 (414)
.++.++||..+++|. ..++|+.+|+|+|++.+ |++++||||||++++|
T Consensus 58 ------------------------------~~~~~~~~~~~~~e~~~~~~h~~~G~l~ma~~~-~~s~~sqFfIt~~~~p 106 (146)
T cd01922 58 ------------------------------RGGASIYGKKFEDEIHPELKHTGAGILSMANAG-PNTNGSQFFITLAPTP 106 (146)
T ss_pred ------------------------------CCcccccCCCcccccccCcCCCCCeEEEEeeCC-CCCCccEEEEEcCCCc
Confidence 345567777788874 56889889999999998 9999999999999999
Q ss_pred CCCCcceeeEEEEechHHHHHHhccccCCCCccccEEEE
Q psy793 180 HLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTIT 218 (414)
Q Consensus 180 ~ld~~~~vfG~V~~G~~vv~~i~~~~~~~~~P~~~i~I~ 218 (414)
+||++|+|||+|++||+||++|+++++.+++|..+|+|.
T Consensus 107 ~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~P~~~I~I~ 145 (146)
T cd01922 107 WLDGKHTIFGRVSKGMKVIENMVEVQTQTDRPIDEVKIL 145 (146)
T ss_pred ccCCCCCEEEEEEcCHHHHHHHHhCCCCCCCcCCCeEEe
Confidence 999999999999999999999999998878999999986
No 15
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=8.4e-41 Score=286.10 Aligned_cols=160 Identities=36% Similarity=0.515 Sum_probs=133.3
Q ss_pred CeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCC
Q psy793 21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE 100 (414)
Q Consensus 21 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~ 100 (414)
+|+.|+|+||||.+.||+||+||++||+++ ||+|+.||||+++|||||||+. .++.++.++++...
T Consensus 3 ~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~----------~Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~--- 68 (166)
T cd01921 3 ETTLGDLVIDLFTDECPLACLNFLKLCKLK----------YYNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLY--- 68 (166)
T ss_pred EeccCCEEEEEcCCCCCHHHHHHHHHHhcC----------CcCCCEEEEEeCCceEEECCcC-CCCCCCcccccccc---
Confidence 577899999999999999999999999655 4999999999999999999986 34544444322100
Q ss_pred cccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCc-ccccccccceeeeccCCCCCCccchhhhhcCC-C
Q psy793 101 NFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN-FKLKHKFEGQLSLANTGHPNTNNSQFFITLAP-C 178 (414)
Q Consensus 101 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~-~~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~-~ 178 (414)
...+..+++|. ..++|+++|+|+||+.+ +++++||||||+++ +
T Consensus 69 ----------------------------------~~~~~~~~~e~~~~~~h~~~G~l~ma~~~-~~~~~SQFfIt~~~~~ 113 (166)
T cd01921 69 ----------------------------------GRQARFFEPEILPLLKHSKKGTVSMVNAG-DNLNGSQFYITLGENL 113 (166)
T ss_pred ----------------------------------cccCcccCcccCCccccCCceEEEEeECC-CCCccceEEEEcCCCC
Confidence 01123455554 46789899999999999 89999999999975 8
Q ss_pred CCCCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcCCCCCCCCCc
Q psy793 179 PHLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNSGQLSLNEDW 229 (414)
Q Consensus 179 p~ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~g~l~~~~~~ 229 (414)
|+||++|+|||+|++||++|++|+.+++ .+++|..+|+|..|+++..+++.
T Consensus 114 ~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~~~~i~~~pf~~ 165 (166)
T cd01921 114 DYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHTHILDDPFPD 165 (166)
T ss_pred cccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEEEEECCCCCC
Confidence 9999999999999999999999999988 57899999999999999877553
No 16
>KOG0883|consensus
Probab=100.00 E-value=1.4e-40 Score=300.73 Aligned_cols=150 Identities=43% Similarity=0.661 Sum_probs=138.4
Q ss_pred CeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCC
Q psy793 21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE 100 (414)
Q Consensus 21 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~ 100 (414)
.|+.|.+-|||+.|.+|++|+||++||.. +||+|+.|||.|++||||||||+ +.|
T Consensus 283 ~Tn~G~lNlELhcd~~P~aceNFI~lc~~----------gYYnnt~FHRsIrnFmiQGGDPT-GTG-------------- 337 (518)
T KOG0883|consen 283 VTNHGPLNLELHCDYAPRACENFITLCKN----------GYYNNTIFHRSIRNFMIQGGDPT-GTG-------------- 337 (518)
T ss_pred eccCCceeeEeecCcchHHHHHHHHHHhc----------ccccchHHHHHHHHHeeeCCCCC-CCC--------------
Confidence 35679999999999999999999999954 55999999999999999999997 344
Q ss_pred cccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCc-ccccccccceeeeccCCCCCCccchhhhhcCCCC
Q psy793 101 NFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN-FKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCP 179 (414)
Q Consensus 101 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~-~~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~~p 179 (414)
.||.|+||.+|.||. ..+.|+.+|+|||||+| |++||||||||.++|-
T Consensus 338 ------------------------------~GGeSiWgKpFkDEf~~~l~H~gRGvlSMANsG-pnTNgSQFFItyrsck 386 (518)
T KOG0883|consen 338 ------------------------------RGGESIWGKPFKDEFCSNLSHDGRGVLSMANSG-PNTNGSQFFITYRSCK 386 (518)
T ss_pred ------------------------------CCCccccCCccccccCCCCCcCCcceEeeccCC-CCCCCceEEEEecchh
Confidence 788899999999995 67899999999999999 9999999999999999
Q ss_pred CCCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcCCCCCCC
Q psy793 180 HLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNSGQLSLN 226 (414)
Q Consensus 180 ~ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~g~l~~~ 226 (414)
|||++||+||||+.|++++.+|+.+++ +.++|..+|+|...-++..+
T Consensus 387 hLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~~~VFVdP 434 (518)
T KOG0883|consen 387 HLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIEDAIVFVDP 434 (518)
T ss_pred hccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEeeeEEeeCc
Confidence 999999999999999999999999998 67999999999998777654
No 17
>KOG0884|consensus
Probab=100.00 E-value=3e-40 Score=251.18 Aligned_cols=146 Identities=47% Similarity=0.732 Sum_probs=132.7
Q ss_pred CeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCC
Q psy793 21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE 100 (414)
Q Consensus 21 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~ 100 (414)
-|+.|+|.||||.+.+|++|+||+.||...+ |++++|||-+++||+|+|||.. .|
T Consensus 6 ht~~gdikiev~~e~tpktce~~l~~~~~~~----------~n~~~~~~~~~~f~v~~~~~~~-tg-------------- 60 (161)
T KOG0884|consen 6 HTDVGDIKIEVFCERTPKTCENFLALCASDY----------YNGCIFHRNIKGFMVQTGDPTH-TG-------------- 60 (161)
T ss_pred eeccCcEEEEEEecCChhHHHHHHHHhhhhh----------ccceeecCCCCCcEEEeCCCCC-CC--------------
Confidence 3566999999999999999999999997776 9999999999999999999963 33
Q ss_pred cccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCc-ccccccccceeeeccCCCCCCccchhhhhcCCCC
Q psy793 101 NFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN-FKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCP 179 (414)
Q Consensus 101 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~-~~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~~p 179 (414)
.||.|+||..|+||. .-++|+.+|+++||+.| |++|+||||||.+..|
T Consensus 61 ------------------------------rgg~siwg~~fede~~~~lkh~~rg~vsmanng-p~tn~sqffity~kq~ 109 (161)
T KOG0884|consen 61 ------------------------------RGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNG-PNTNGSQFFITYGKQP 109 (161)
T ss_pred ------------------------------CCCccccCCcchHHHHHHHhhccceeEEcccCC-CCCCCceEEEEecCCC
Confidence 788899999999995 45899999999999999 9999999999999999
Q ss_pred CCCCcceeeEEEEechHHHHHHhccccC--CCCccccEEEEcCCC
Q psy793 180 HLDGKNVVFGCVRQGFGVAREVSYVEAE--NDKPLVTCTITNSGQ 222 (414)
Q Consensus 180 ~ld~~~~vfG~V~~G~~vv~~i~~~~~~--~~~P~~~i~I~~~g~ 222 (414)
|||-+|||||+||+|++.+++|+.+++. ..+|..++.|.+...
T Consensus 110 hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~iti 154 (161)
T KOG0884|consen 110 HLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 154 (161)
T ss_pred ccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEE
Confidence 9999999999999999999999999983 478998888876543
No 18
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=7.7e-39 Score=278.09 Aligned_cols=155 Identities=30% Similarity=0.462 Sum_probs=128.3
Q ss_pred cCCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCC
Q psy793 7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNG 86 (414)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~ 86 (414)
..++++|.|+++ .|+|+||||++.||+||+||++||+. +||+|+.||||+|+|||||||+....+
T Consensus 25 ~~~~~~v~l~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~----------g~Ydg~~FhRvi~~f~iQgG~~~~~~~ 89 (190)
T PRK10903 25 AKGDPHVLLTTS-----AGNIELELNSQKAPVSVKNFVDYVNS----------GFYNNTTFHRVIPGFMIQGGGFTEQMQ 89 (190)
T ss_pred cCCCcEEEEEec-----cccEEEEEeCCCCcHHHHHHHHHHhc----------CCcCCcEEEEEeCCceEEeCCcCCCCC
Confidence 346777877654 49999999999999999999999954 459999999999999999998753211
Q ss_pred CCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCC
Q psy793 87 TGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNT 166 (414)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~ 166 (414)
...++..+.+|.....|+.+|+|+|++.+.|++
T Consensus 90 -----------------------------------------------~~~~~~~~~~e~~~~l~~~~G~lama~~~~~~s 122 (190)
T PRK10903 90 -----------------------------------------------QKKPNPPIKNEADNGLRNTRGTIAMARTADKDS 122 (190)
T ss_pred -----------------------------------------------CCCCCCcccCcccccCcCCCcEEEeCCCCCCCC
Confidence 011234466665444566899999999877999
Q ss_pred ccchhhhhcCCCCCCCC-----cceeeEEEEechHHHHHHhccccC-----CCCccccEEEEcCCCC
Q psy793 167 NNSQFFITLAPCPHLDG-----KNVVFGCVRQGFGVAREVSYVEAE-----NDKPLVTCTITNSGQL 223 (414)
Q Consensus 167 ~~sqf~it~~~~p~ld~-----~~~vfG~V~~G~~vv~~i~~~~~~-----~~~P~~~i~I~~~g~l 223 (414)
++||||||++++|+||+ +|||||+|++||+||++|++++++ .++|..+|.|.+|.++
T Consensus 123 n~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~v~ 189 (190)
T PRK10903 123 ATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVL 189 (190)
T ss_pred cccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeEEEEEEEe
Confidence 99999999999999984 899999999999999999999884 3689999999998654
No 19
>KOG0882|consensus
Probab=100.00 E-value=1.1e-39 Score=300.97 Aligned_cols=154 Identities=43% Similarity=0.644 Sum_probs=139.3
Q ss_pred cEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCc
Q psy793 11 YIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGE 90 (414)
Q Consensus 11 ~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~ 90 (414)
+.+.=+-.|.-|+.|+|.|.||++.||+||+||...|+.+ ||+|+.|||||+|||||+|||. ++|
T Consensus 400 ~~~l~~~aiihtt~gdi~~kl~p~ecpktvenf~th~rng----------yy~~~~fhriik~fmiqtgdp~-g~g---- 464 (558)
T KOG0882|consen 400 NKLLGKAAIIHTTQGDIHIKLYPEECPKTVENFTTHSRNG----------YYDNHTFHRIIKGFMIQTGDPL-GDG---- 464 (558)
T ss_pred ceecccceEEEecccceEEEecccccchhhhhhhccccCc----------cccCcchHHhhhhheeecCCCC-CCC----
Confidence 3444455566788899999999999999999999999554 5999999999999999999997 455
Q ss_pred cccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCc-ccccccccceeeeccCCCCCCccc
Q psy793 91 SIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN-FKLKHKFEGQLSLANTGHPNTNNS 169 (414)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~-~~~~~~~~g~l~~~~~~~~~~~~s 169 (414)
+||.|+||..|+||. ..|+|+++.+|||||+| ||+|||
T Consensus 465 ----------------------------------------tggesiwg~dfedefh~~lrhdrpft~smanag-~ntngs 503 (558)
T KOG0882|consen 465 ----------------------------------------TGGESIWGKDFEDEFHPNLRHDRPFTVSMANAG-PNTNGS 503 (558)
T ss_pred ----------------------------------------CCCcccccccchhhcCcccccCCCceEEecccC-CCCCCc
Confidence 778889999999995 67999999999999999 999999
Q ss_pred hhhhhcCCCCCCCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcC
Q psy793 170 QFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNS 220 (414)
Q Consensus 170 qf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~ 220 (414)
|||||+.++|||||+|||||||+.||+||.+|+++.+ ..++|.+++.|.+.
T Consensus 504 qffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iini 555 (558)
T KOG0882|consen 504 QFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINI 555 (558)
T ss_pred eEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEE
Confidence 9999999999999999999999999999999999998 57899999999874
No 20
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=2.2e-38 Score=271.98 Aligned_cols=158 Identities=37% Similarity=0.587 Sum_probs=136.1
Q ss_pred cEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCc
Q psy793 11 YIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGE 90 (414)
Q Consensus 11 ~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~ 90 (414)
-.|.|+++ .|+|+||||++.||+||+||++||+.+ ||+|+.||||+|+|+|||||+. +++
T Consensus 6 ~~v~i~Ts-----~G~i~ieL~~~~~P~t~~nF~~L~~~~----------~Y~~~~f~Rvi~~f~iQgGd~~-~~g---- 65 (171)
T cd01925 6 GKVILKTT-----AGDIDIELWSKEAPKACRNFIQLCLEG----------YYDNTIFHRVVPGFIIQGGDPT-GTG---- 65 (171)
T ss_pred cEEEEEEc-----cccEEEEEeCCCChHHHHHHHHHHhcC----------CCCCCEEEEEcCCcEEEccccC-CCC----
Confidence 45666554 599999999999999999999999655 4999999999999999999985 233
Q ss_pred cccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcc-cccccccceeeeccCCCCCCccc
Q psy793 91 SIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENF-KLKHKFEGQLSLANTGHPNTNNS 169 (414)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~-~~~~~~~g~l~~~~~~~~~~~~s 169 (414)
.++.++||..+++|.. .++|+.+|+|+|++.+ +++++|
T Consensus 66 ----------------------------------------~g~~s~~g~~~~~E~~~~~~~~~~G~l~ma~~g-~~s~~s 104 (171)
T cd01925 66 ----------------------------------------TGGESIYGEPFKDEFHSRLRFNRRGLVGMANAG-DDSNGS 104 (171)
T ss_pred ----------------------------------------ccCcccCCCccCcccccCcCCCCCcEEEECcCC-CCCccc
Confidence 4566777888888754 5678899999999999 899999
Q ss_pred hhhhhcCCCCCCCCcceeeEEEEe-chHHHHHHhcccc-CCCCccccEEEEcCCCCCCCCCc
Q psy793 170 QFFITLAPCPHLDGKNVVFGCVRQ-GFGVAREVSYVEA-ENDKPLVTCTITNSGQLSLNEDW 229 (414)
Q Consensus 170 qf~it~~~~p~ld~~~~vfG~V~~-G~~vv~~i~~~~~-~~~~P~~~i~I~~~g~l~~~~~~ 229 (414)
|||||++++|+||++|+|||+|+. +++++++|+.+++ .+++|..+|+|.+|+++..+++.
T Consensus 105 qFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~~~pf~~ 166 (171)
T cd01925 105 QFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVLENPFDD 166 (171)
T ss_pred EEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEEcCCchh
Confidence 999999999999999999999993 5788999999998 56899999999999888765443
No 21
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=6e-38 Score=265.15 Aligned_cols=142 Identities=31% Similarity=0.465 Sum_probs=119.2
Q ss_pred CeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCC
Q psy793 21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE 100 (414)
Q Consensus 21 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~ 100 (414)
+|+.|+|+|+||++.||+||+||++||+.+ ||+++.||||+|+|||||||+....+
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g----------~Yd~~~fhRvi~~f~iQ~Gd~~~~~~-------------- 58 (155)
T cd01920 3 QTSLGDIVVELYDDKAPITVENFLAYVRKG----------FYDNTIFHRVISGFVIQGGGFTPDLA-------------- 58 (155)
T ss_pred EecceeEEEEEeCCCCcHHHHHHHHHHhcC----------CCCCCEEEEEeCCcEEEeCCCCCCCC--------------
Confidence 467899999999999999999999999554 59999999999999999999864221
Q ss_pred cccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCCccchhhhhcCCCCC
Q psy793 101 NFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPH 180 (414)
Q Consensus 101 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~~p~ 180 (414)
...++..+.+|.....|+.+|+|+||+.+.|++++||||||++++|+
T Consensus 59 ---------------------------------~~~~~~~~~~e~~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ 105 (155)
T cd01920 59 ---------------------------------QKETLKPIKNEAGNGLSNTRGTIAMARTNAPDSATSQFFINLKDNAS 105 (155)
T ss_pred ---------------------------------ccccCCcccCcccccccCCceEEEECCCCCCCCccceEEEECCCchh
Confidence 01123445566544456689999999987799999999999999999
Q ss_pred CCC-----cceeeEEEEechHHHHHHhccccCC-----CCccccEEEEc
Q psy793 181 LDG-----KNVVFGCVRQGFGVAREVSYVEAEN-----DKPLVTCTITN 219 (414)
Q Consensus 181 ld~-----~~~vfG~V~~G~~vv~~i~~~~~~~-----~~P~~~i~I~~ 219 (414)
||+ +|||||+|++||++|++|+.+++.. +.|..+|+|.+
T Consensus 106 ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~ 154 (155)
T cd01920 106 LDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIES 154 (155)
T ss_pred cCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEEE
Confidence 995 7999999999999999999999843 58888888865
No 22
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=8.1e-38 Score=265.82 Aligned_cols=144 Identities=28% Similarity=0.441 Sum_probs=118.5
Q ss_pred CeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCC
Q psy793 21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE 100 (414)
Q Consensus 21 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~ 100 (414)
.|+.|+|+|+||++.||+||+||++||+.+ ||+++.||||+|+|||||||+..+.+
T Consensus 5 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g----------~Yd~~~fhRvi~~f~iQgGd~~~~~~-------------- 60 (164)
T PRK10791 5 HTNHGDIVIKTFDDKAPETVKNFLDYCREG----------FYNNTIFHRVINGFMIQGGGFEPGMK-------------- 60 (164)
T ss_pred EEccccEEEEEeCCCCcHHHHHHHHHHhcC----------CcCCcEEEEEecCcEEEeCCcCCCCC--------------
Confidence 467799999999999999999999999655 49999999999999999998753211
Q ss_pred cccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCCccchhhhhcCCCCC
Q psy793 101 NFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPH 180 (414)
Q Consensus 101 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~~p~ 180 (414)
...++..+++|.....++.+|+|+||+.+.|++++||||||+.++|+
T Consensus 61 ---------------------------------~~~~~~~~~~e~~~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ 107 (164)
T PRK10791 61 ---------------------------------QKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDF 107 (164)
T ss_pred ---------------------------------cCCCCCCcCCcccccccCCCcEEEECCCCCcCCccceEEEEecCchh
Confidence 01123445555332334479999999987699999999999999887
Q ss_pred CC-------C-cceeeEEEEechHHHHHHhccccCC-----CCccccEEEEcCC
Q psy793 181 LD-------G-KNVVFGCVRQGFGVAREVSYVEAEN-----DKPLVTCTITNSG 221 (414)
Q Consensus 181 ld-------~-~~~vfG~V~~G~~vv~~i~~~~~~~-----~~P~~~i~I~~~g 221 (414)
|| + +|||||+|++||++|++|+++++.. ++|..+|+|.++.
T Consensus 108 ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~ 161 (164)
T PRK10791 108 LNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVT 161 (164)
T ss_pred hcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCeEEEEEE
Confidence 76 3 7999999999999999999999843 6899999999874
No 23
>KOG0865|consensus
Probab=100.00 E-value=2.8e-37 Score=257.68 Aligned_cols=163 Identities=57% Similarity=0.895 Sum_probs=152.6
Q ss_pred CCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceE---EeccceeccCCccccC
Q psy793 9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR---IIPQFMIQGGDITNFN 85 (414)
Q Consensus 9 ~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~r---v~~~~~iq~G~~~~~~ 85 (414)
.||.||||++++++++|+++++||.|..|+|++||..||+|..+.+ |.+..||| .+++||+||||.+..+
T Consensus 2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~-------yk~s~fhr~~~~~~~fm~qggDft~hn 74 (167)
T KOG0865|consen 2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFG-------YKGSCFHRLIPIIPGFMCQGGDFTCHN 74 (167)
T ss_pred CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccc-------cccchhhhccccccceeeccCcccccC
Confidence 4799999999999999999999999999999999999999887776 99999999 3347999999998777
Q ss_pred CCCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCC
Q psy793 86 GTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPN 165 (414)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~ 165 (414)
+ ++|.|+|++.|+||++.++|..+|+|+||+.+ |+
T Consensus 75 g--------------------------------------------tggkSiy~ekF~DenFilkhtgpGiLSmaNag-pn 109 (167)
T KOG0865|consen 75 G--------------------------------------------TGGKSIYGEKFDDENFILKHTGPGILSMANAG-PN 109 (167)
T ss_pred C--------------------------------------------ccceEecccccCCcCcEEecCCCCeeehhhcC-CC
Confidence 7 66778889999999999999999999999999 99
Q ss_pred CccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccCCCCccccEEEEcCCCC
Q psy793 166 TNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223 (414)
Q Consensus 166 ~~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~~~P~~~i~I~~~g~l 223 (414)
+++||||||+..+.||||+++|||+|.+||+++++++.....++.|...|.|.+||.+
T Consensus 110 tngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~gk~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 110 TNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRNGKTSKKITIADCGQL 167 (167)
T ss_pred ccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcCCcccccEEEecCCcC
Confidence 9999999999999999999999999999999999999998899999999999999975
No 24
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=2.6e-36 Score=259.37 Aligned_cols=149 Identities=30% Similarity=0.423 Sum_probs=112.4
Q ss_pred CeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCC
Q psy793 21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE 100 (414)
Q Consensus 21 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~ 100 (414)
.|+.|+|+|+||++.||+||+||++||+ .+||+++.||||+++|||||||+..... ++... ......
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~----------~g~Ydg~~FhRVi~~fviQgGdp~~~~~-~~~~~--~~~~~~ 69 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVE----------RGFYDGMEFHRVEGGFVVQTGDPQGKNP-GFPDP--ETGKSR 69 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHH----------hCCcCCCEEEEecCCcEEEecCCCCCCC-Ccccc--cccccc
Confidence 4788999999999999999999999995 4559999999999999999999864321 11000 000001
Q ss_pred cccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcC-----CCCcccccccccceeeeccCCC-CCCccchhhhh
Q psy793 101 NFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCF-----EDENFKLKHKFEGQLSLANTGH-PNTNNSQFFIT 174 (414)
Q Consensus 101 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~-----~~e~~~~~~~~~g~l~~~~~~~-~~~~~sqf~it 174 (414)
..+.++ .. ...+.++|+..+ .++...++|+++|+|+||+.++ |++++||||||
T Consensus 70 ~~p~e~-------------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~ 128 (176)
T cd01924 70 TIPLEI-------------KP--------EGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFL 128 (176)
T ss_pred ccccee-------------cc--------cCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEE
Confidence 111111 00 022334555544 2455667888999999999886 59999999999
Q ss_pred cC-------CCCCCCCcceeeEEEEechHHHHHHhc
Q psy793 175 LA-------PCPHLDGKNVVFGCVRQGFGVAREVSY 203 (414)
Q Consensus 175 ~~-------~~p~ld~~~~vfG~V~~G~~vv~~i~~ 203 (414)
++ ++|+||++|||||+|++||+||++|+.
T Consensus 129 ~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl~~I~~ 164 (176)
T cd01924 129 LKDNELTPSRNNVLDGRYAVFGYVTDGLDILRELKV 164 (176)
T ss_pred eccccccCCCCCccCCCceEEEEEecCHHHHHhhcC
Confidence 99 799999999999999999999999976
No 25
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=1.3e-34 Score=244.38 Aligned_cols=141 Identities=52% Similarity=0.868 Sum_probs=123.2
Q ss_pred CeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCC
Q psy793 21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE 100 (414)
Q Consensus 21 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~ 100 (414)
.|+.|+|+|+||++.||++|+||++||++++ |+++.||||+|+++|||||+.....
T Consensus 3 ~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~----------Y~~~~f~rv~~~~~iq~Gd~~~~~~-------------- 58 (146)
T cd00317 3 DTTKGRIVIELYGDEAPKTVENFLSLARGGF----------YDGTTFHRVIPGFMIQGGDPTGTGG-------------- 58 (146)
T ss_pred EeccCcEEEEEcCCCChHHHHHHHHHHhcCC----------cCCCEEEEEeCCCeEEECCCCCCCC--------------
Confidence 4566999999999999999999999997665 9999999999999999999864322
Q ss_pred cccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCccccc-ccccceeeeccCCCCCCccchhhhhcCCCC
Q psy793 101 NFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK-HKFEGQLSLANTGHPNTNNSQFFITLAPCP 179 (414)
Q Consensus 101 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~-~~~~g~l~~~~~~~~~~~~sqf~it~~~~p 179 (414)
.+ +.++..+++|..... |+++|+|+|++.+ +++++|||||++.++|
T Consensus 59 ------------------------------~~--~~~~~~~~~E~~~~~~~~~~G~v~~~~~~-~~~~~sqF~Itl~~~~ 105 (146)
T cd00317 59 ------------------------------GG--SGPGYKFPDENFPLKYHHRRGTLSMANAG-PNTNGSQFFITTAPTP 105 (146)
T ss_pred ------------------------------CC--CcCCCccCCccccCcCcCCCcEEEEeeCC-CCCcccEEEEECCCCc
Confidence 00 234566777765554 7899999999998 7899999999999999
Q ss_pred CCCCcceeeEEEEechHHHHHHhccccC-CCCccccEEEE
Q psy793 180 HLDGKNVVFGCVRQGFGVAREVSYVEAE-NDKPLVTCTIT 218 (414)
Q Consensus 180 ~ld~~~~vfG~V~~G~~vv~~i~~~~~~-~~~P~~~i~I~ 218 (414)
+||++|+|||+|++||++|++|...++. +++|..+|+|.
T Consensus 106 ~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~ 145 (146)
T cd00317 106 HLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTIS 145 (146)
T ss_pred ccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEe
Confidence 9999999999999999999999999984 88999999986
No 26
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=4.7e-34 Score=243.55 Aligned_cols=152 Identities=47% Similarity=0.773 Sum_probs=127.6
Q ss_pred EEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCcccc
Q psy793 14 FLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIY 93 (414)
Q Consensus 14 ~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~ 93 (414)
||++.+++ .|+|+||||++.||++|+||++||+.++ |+|+.||||+|+++||||++...... +
T Consensus 1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~~~~----------y~g~~f~ri~~~~~i~~G~~~~~~~~-~---- 63 (155)
T PF00160_consen 1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCTSGF----------YDGTKFHRIIPNFVIQGGDPTGNGGY-G---- 63 (155)
T ss_dssp EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHHTTS----------STTEBEEEEETTTEEEESSTTTSSSS-T----
T ss_pred CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhcccc----------cCCceeecccccceeeeeeccCCCCc-c----
Confidence 67777744 8999999999999999999999997554 99999999999999999998643220 0
Q ss_pred CCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcc--cccccccceeeeccCC-CCCCccch
Q psy793 94 GPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENF--KLKHKFEGQLSLANTG-HPNTNNSQ 170 (414)
Q Consensus 94 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~--~~~~~~~g~l~~~~~~-~~~~~~sq 170 (414)
... ...+..+++|.. .+.| .+|+|+|++.+ ++++++||
T Consensus 64 -------------------------------------~~~-~~~~~~~~~E~~~~~~~~-~~G~v~~~~~~~~~~~~~sq 104 (155)
T PF00160_consen 64 -------------------------------------RED-STGGEPIPDEFNPSLLKH-RRGLVSMARSGKDPNSNGSQ 104 (155)
T ss_dssp -------------------------------------SEE-BTTBSCBSSSGBTTSSSS-STTEEEEEBSSSSTTEBSSE
T ss_pred -------------------------------------ccc-ccCccccccccccccccc-cceeeeecccccCCCCCCce
Confidence 001 222445777763 4555 89999999885 58899999
Q ss_pred hhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccCCCCccccEEEEcCCC
Q psy793 171 FFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQ 222 (414)
Q Consensus 171 f~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~~~P~~~i~I~~~g~ 222 (414)
|||++.++|+||++|+|||+|++||++|++|+..++.. +|..+|+|.+||+
T Consensus 105 F~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~-~p~~~v~I~~cgv 155 (155)
T PF00160_consen 105 FFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE-RPKQDVTISSCGV 155 (155)
T ss_dssp EEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT-EBSSTEEEEEEEE
T ss_pred EEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC-ccCCCeEEEEeEC
Confidence 99999999999999999999999999999999998876 9999999999974
No 27
>KOG0415|consensus
Probab=100.00 E-value=1.8e-33 Score=251.91 Aligned_cols=162 Identities=38% Similarity=0.551 Sum_probs=138.7
Q ss_pred CeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCC
Q psy793 21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE 100 (414)
Q Consensus 21 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~ 100 (414)
+|++|+|||+||.+.+|.+|.|||+||+-. ||+++.||.|..+|.+|.|||++ .|.||.++|+.-+
T Consensus 6 eTtlGDlvIDLf~~erP~~clNFLKLCk~K----------YYN~clfh~vq~~f~aQTGDPtG-tG~GG~si~~~ly--- 71 (479)
T KOG0415|consen 6 ETTLGDLVIDLFVKERPRTCLNFLKLCKIK----------YYNFCLFHTVQRDFTAQTGDPTG-TGDGGESIYGVLY--- 71 (479)
T ss_pred EeecccEEeeeecccCcHHHHHHHHHHhHh----------hcccceeeeccccceeecCCCCC-CCCCcceeeeecc---
Confidence 677799999999999999999999999555 49999999999999999999974 7777776654311
Q ss_pred cccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCc-ccccccccceeeeccCCCCCCccchhhhhcCC-C
Q psy793 101 NFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN-FKLKHKFEGQLSLANTGHPNTNNSQFFITLAP-C 178 (414)
Q Consensus 101 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~-~~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~-~ 178 (414)
|. .+..|++|. +.++|...|+|+|++.| .+.+||||||||+. .
T Consensus 72 --------------------------------G~--q~rffeaE~~p~l~Hsk~G~vsmvs~g-~n~~gSQF~iTlgenL 116 (479)
T KOG0415|consen 72 --------------------------------GE--QARFFEAEFLPKLKHSKMGTVSMVSAG-ENLNGSQFFITLGENL 116 (479)
T ss_pred --------------------------------cc--cchhhhhhhcccccccccceEEeecCC-cccccceEEEEccccc
Confidence 00 023466664 57899999999999999 89999999999996 5
Q ss_pred CCCCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcCCCCCCCCCcCc
Q psy793 179 PHLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNSGQLSLNEDWGV 231 (414)
Q Consensus 179 p~ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~g~l~~~~~~~i 231 (414)
.+|||+|||||+|++|++++.+|+..-+ .+++|..+|+|.++-+|.++++.+.
T Consensus 117 dyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~HTiiLdDPFddpp 170 (479)
T KOG0415|consen 117 DYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKHTIILDDPFDDPP 170 (479)
T ss_pred cccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeeeeEEecCCCCCch
Confidence 6999999999999999999999988776 6789999999999999998877554
No 28
>KOG0885|consensus
Probab=100.00 E-value=5.7e-34 Score=257.17 Aligned_cols=161 Identities=38% Similarity=0.576 Sum_probs=140.3
Q ss_pred cEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCc
Q psy793 11 YIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGE 90 (414)
Q Consensus 11 ~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~ 90 (414)
-.|.+. |+.|+|.|||++..||++|.||++||..+| |+||.|||++|||.+|||||. ++|
T Consensus 13 gkvil~-----TT~G~I~iELW~kE~P~acrnFiqKOGegy----------y~nt~fhrlvp~f~~Qggdp~-~~g---- 72 (439)
T KOG0885|consen 13 GKVILK-----TTKGDIDIELWAKECPKACRNFIQLCLEGY----------YDNTEFHRLVPGFLVQGGDPT-GTG---- 72 (439)
T ss_pred ceEEEE-----eccCceeeeehhhhhhHHHHHHHHHHHhcc----------ccCceeeeeccchhcccCCCC-CCC----
Confidence 355554 455999999999999999999999996554 999999999999999999996 345
Q ss_pred cccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCc-ccccccccceeeeccCCCCCCccc
Q psy793 91 SIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN-FKLKHKFEGQLSLANTGHPNTNNS 169 (414)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~-~~~~~~~~g~l~~~~~~~~~~~~s 169 (414)
+||.||||.+|.+|. ..++++++|+|+||+.+ .+.|||
T Consensus 73 ----------------------------------------tGgesiyg~~fadE~h~Rlrf~rrGlvgmana~-~~~ngs 111 (439)
T KOG0885|consen 73 ----------------------------------------TGGESIYGRPFADEFHPRLRFNRRGLVGMANAG-NDDNGS 111 (439)
T ss_pred ----------------------------------------CCccccccccchhhcCcceeeeccceeeecccC-CCCCCc
Confidence 677888899998884 67889999999999999 699999
Q ss_pred hhhhhcCCCCCCCCcceeeEEEEe-chHHHHHHhcccc-CCCCccccEEEEcCCCCCCCCCcCcc
Q psy793 170 QFFITLAPCPHLDGKNVVFGCVRQ-GFGVAREVSYVEA-ENDKPLVTCTITNSGQLSLNEDWGVA 232 (414)
Q Consensus 170 qf~it~~~~p~ld~~~~vfG~V~~-G~~vv~~i~~~~~-~~~~P~~~i~I~~~g~l~~~~~~~i~ 232 (414)
||||||+++|+|++++|+||+|+. -+-.+.+|..+.+ .+.+|..+-.|.++.++..++++..+
T Consensus 112 qFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~s~EV~~npFdDI~p 176 (439)
T KOG0885|consen 112 QFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIKSVEVLINPFDDIKP 176 (439)
T ss_pred eEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCCccceeeeEeecCchhhcch
Confidence 999999999999999999999984 5567778888887 47899999999999999888776554
No 29
>KOG0543|consensus
Probab=99.94 E-value=3.2e-25 Score=206.15 Aligned_cols=157 Identities=31% Similarity=0.535 Sum_probs=146.4
Q ss_pred CHHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHH
Q psy793 256 QLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAIN 335 (414)
Q Consensus 256 ~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~ 335 (414)
..++..+.|...++.||.+|+.|+|..|+..|.+|+..++..... +.++..........+++|+|.||+|+++|.+|+.
T Consensus 200 ~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~-~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~ 278 (397)
T KOG0543|consen 200 FAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSF-DEEEQKKAEALKLACHLNLAACYLKLKEYKEAIE 278 (397)
T ss_pred chHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccC-CHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHH
Confidence 355788999999999999999999999999999999999876643 4456666667888999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy793 336 LCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQNG 413 (414)
Q Consensus 336 ~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~~ 413 (414)
.|+++|.++|+|+||+||+|.|+..+++|+.|+.+|+++++++|+|.++...|..|..+++++++++|++|++||++.
T Consensus 279 ~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 279 SCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999864
No 30
>KOG0553|consensus
Probab=99.86 E-value=2.4e-21 Score=173.61 Aligned_cols=125 Identities=23% Similarity=0.421 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q psy793 259 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD 338 (414)
Q Consensus 259 ~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~ 338 (414)
+....|+.++.+||.+++.++|.+|+..|.+||.+ +|.++..|.|+|.+|.++|+|+.|+++|+
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l----------------~P~nAVyycNRAAAy~~Lg~~~~AVkDce 139 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL----------------DPTNAVYYCNRAAAYSKLGEYEDAVKDCE 139 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc----------------CCCcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 56678999999999999999999999999999999 89999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q psy793 339 DILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL 399 (414)
Q Consensus 339 ~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~ 399 (414)
.||.+||++.++|.|+|.+|+.+|++++|+..|++||+++|+|+..+..|..+...+.+..
T Consensus 140 ~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 140 SALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999999988877655
No 31
>KOG0545|consensus
Probab=99.84 E-value=1.4e-19 Score=156.77 Aligned_cols=169 Identities=23% Similarity=0.419 Sum_probs=154.3
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC--CcHHHHHhhHHHHHHHHHHHH
Q psy793 244 FPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS--QSKTQQKHFRSYYTAALLNMA 321 (414)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~--~~~~~~~~~~~~~~~~~~nla 321 (414)
.|..+..+++.++-+++.+....+...||.+|+.|+|.+|..+|..||.++.....- ....++.+++....+++.|.|
T Consensus 158 ~P~qYq~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~ 237 (329)
T KOG0545|consen 158 APSQYQRETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYC 237 (329)
T ss_pred CchhhccccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHH
Confidence 455667777788888899999999999999999999999999999999998765522 347799999999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHHHHHHH
Q psy793 322 AVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ-QILKEIAFVRKQMRHHLN 400 (414)
Q Consensus 322 ~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~-~~~~~l~~~~~~~~~~~~ 400 (414)
+|++..++|-++++.|..+|..+|.|.||||++|.++...-+.++|.++|.++|+++|.-. .+.+.|..+..++.+..+
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~ 317 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQE 317 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999875 456889999999999999
Q ss_pred HHHHHHHhhhcC
Q psy793 401 LEKMTYARMFQN 412 (414)
Q Consensus 401 ~~k~~~~~~f~~ 412 (414)
.+|-.|.+||++
T Consensus 318 edr~~~~kmfs~ 329 (329)
T KOG0545|consen 318 EDRLRCRKMFSQ 329 (329)
T ss_pred HHHHHHHHhcCC
Confidence 999999999984
No 32
>KOG4234|consensus
Probab=99.83 E-value=2e-19 Score=151.51 Aligned_cols=138 Identities=25% Similarity=0.357 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHH
Q psy793 257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL 336 (414)
Q Consensus 257 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~ 336 (414)
.++....+..++..||.+|+.|+|.+|...|..||.+.++.. ......+|.|+|.|++|++.|+.|+.+
T Consensus 88 k~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~-----------~e~rsIly~Nraaa~iKl~k~e~aI~d 156 (271)
T KOG4234|consen 88 KDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS-----------TEERSILYSNRAAALIKLRKWESAIED 156 (271)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc-----------HHHHHHHHhhhHHHHHHhhhHHHHHHH
Confidence 445567889999999999999999999999999999987766 677889999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy793 337 CDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMT 405 (414)
Q Consensus 337 ~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~ 405 (414)
|.+||+++|.+.+|+.|+|.+|..+..|++|+.+|++.++++|....++..+.++-..+.++.++.|.-
T Consensus 157 csKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee 225 (271)
T KOG4234|consen 157 CSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEE 225 (271)
T ss_pred HHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888876643
No 33
>KOG0548|consensus
Probab=99.69 E-value=1.7e-16 Score=152.00 Aligned_cols=117 Identities=25% Similarity=0.403 Sum_probs=112.8
Q ss_pred HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793 263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 342 (414)
Q Consensus 263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 342 (414)
.+...+..||.+|+.|+|..|+.+|++||.. +|.+..+|.|+|.||.+++.+..|+.+|+++++
T Consensus 357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr----------------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKR----------------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhc----------------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3667888999999999999999999999999 899999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy793 343 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 395 (414)
Q Consensus 343 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 395 (414)
++|++.++|+|.|.|+..+.+|++|++.|+++++++|++.++...+.+|...+
T Consensus 421 L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 421 LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998865
No 34
>KOG0547|consensus
Probab=99.67 E-value=7.4e-16 Score=145.68 Aligned_cols=135 Identities=22% Similarity=0.282 Sum_probs=115.8
Q ss_pred ccCCHHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHH
Q psy793 253 ETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKR 332 (414)
Q Consensus 253 ~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~ 332 (414)
..+..++..+.|..++++||.+|+.|+|++||++|++||++ .|..+..|.|++.||..+|+|++
T Consensus 104 ~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l----------------~p~epiFYsNraAcY~~lgd~~~ 167 (606)
T KOG0547|consen 104 KAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIEL----------------CPDEPIFYSNRAACYESLGDWEK 167 (606)
T ss_pred hccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhc----------------CCCCchhhhhHHHHHHHHhhHHH
Confidence 34457788999999999999999999999999999999999 66668899999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793 333 AINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL-PNDQQILKEIAFVRKQMRHHLNLEK 403 (414)
Q Consensus 333 A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~~~~~~~~l~~~~~~~~~~~~~~k 403 (414)
.+++|++||+++|+.+||++||+.++..+|++.+|+.+..-..-+. =+|..+.-.+.+++...+....+++
T Consensus 168 Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~ 239 (606)
T KOG0547|consen 168 VIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEK 239 (606)
T ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999987654443 2456666666666666665555544
No 35
>KOG4648|consensus
Probab=99.65 E-value=3.8e-16 Score=141.72 Aligned_cols=121 Identities=27% Similarity=0.349 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHH
Q psy793 257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL 336 (414)
Q Consensus 257 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~ 336 (414)
.++.+..+..++++||.||++|.|++||.||.+++.+ .|.....+.|+|.+|++++.|..|..+
T Consensus 90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~----------------~P~NpV~~~NRA~AYlk~K~FA~AE~D 153 (536)
T KOG4648|consen 90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAV----------------YPHNPVYHINRALAYLKQKSFAQAEED 153 (536)
T ss_pred HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhcc----------------CCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 6677888889999999999999999999999999999 788889999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy793 337 CDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK 393 (414)
Q Consensus 337 ~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 393 (414)
|+.|+.++..+.+||-|++.+...+|...+|.++++.+|+|.|++.+....++.+..
T Consensus 154 C~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 154 CEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999998888877777654
No 36
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.62 E-value=1.1e-14 Score=122.23 Aligned_cols=116 Identities=15% Similarity=0.192 Sum_probs=109.8
Q ss_pred HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCC
Q psy793 266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP 345 (414)
Q Consensus 266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p 345 (414)
.+...|..++..|+|++|+..|.+++.+ +|....+|.++|.++.++|++++|+..|+++++++|
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMA----------------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3567899999999999999999999999 899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q psy793 346 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH 397 (414)
Q Consensus 346 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~ 397 (414)
+++.+++++|.|+..+|++++|+..|++++++.|++...+..++.++..+..
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~ 141 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT 141 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998888776553
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.62 E-value=6.1e-15 Score=142.39 Aligned_cols=118 Identities=17% Similarity=0.313 Sum_probs=112.7
Q ss_pred HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793 265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 344 (414)
Q Consensus 265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 344 (414)
..++..|+.+|..++|.+|+.+|.+||++ .|....+|+++|.||++++++++|+.++++|+.++
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~----------------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~ 66 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDL----------------DPNNAELYADRAQANIKLGNFTEAVADANKAIELD 66 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45788999999999999999999999999 78888999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q psy793 345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 398 (414)
Q Consensus 345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~ 398 (414)
|+++.+|+++|.+++.+|+|++|+..|+++++++|++..+...+..|...+...
T Consensus 67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998888654
No 38
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.55 E-value=1.7e-13 Score=113.55 Aligned_cols=111 Identities=9% Similarity=0.141 Sum_probs=101.6
Q ss_pred HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 341 (414)
Q Consensus 262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 341 (414)
+..+.++..|..++..|++++|...|+-+..+ +|.....|+|||.|+..+|+|.+|+..|.+|+
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~----------------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~ 96 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY----------------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA 96 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44677899999999999999999999999999 99999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHHH
Q psy793 342 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL---PNDQQILKEI 388 (414)
Q Consensus 342 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~---P~~~~~~~~l 388 (414)
.++|+++.++++.|.|++.+|+.+.|.+.|+.|+... |.+..++...
T Consensus 97 ~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A 146 (157)
T PRK15363 97 QIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRA 146 (157)
T ss_pred hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHH
Confidence 9999999999999999999999999999999999987 4444444333
No 39
>KOG0550|consensus
Probab=99.55 E-value=2.4e-14 Score=133.11 Aligned_cols=130 Identities=22% Similarity=0.368 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHH
Q psy793 257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL 336 (414)
Q Consensus 257 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~ 336 (414)
.-...+.....++.||.+|+.|.|..|.++|+.||.+-+.+ ....+.+|.|+|.++.++|+.++|+.+
T Consensus 242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n------------~~~naklY~nra~v~~rLgrl~eaisd 309 (486)
T KOG0550|consen 242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN------------KKTNAKLYGNRALVNIRLGRLREAISD 309 (486)
T ss_pred HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc------------cchhHHHHHHhHhhhcccCCchhhhhh
Confidence 33445667888999999999999999999999999983332 245678999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q psy793 337 CDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL 399 (414)
Q Consensus 337 ~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~ 399 (414)
|+.|+.++|...++|.++|.|+..+++|++|.++|++|+++.-+ ..++..+.++...+++.+
T Consensus 310 c~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSk 371 (486)
T KOG0550|consen 310 CNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSK 371 (486)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999876 777777777766665443
No 40
>KOG0548|consensus
Probab=99.53 E-value=3.5e-14 Score=136.26 Aligned_cols=113 Identities=19% Similarity=0.326 Sum_probs=109.1
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
+..++.+||.+|..|+|+.|+.+|..||.+ +|....+|.|+..||.++++|.+|+++..+.+++
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l----------------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l 65 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIML----------------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL 65 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHcc----------------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc
Confidence 456889999999999999999999999999 7888899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy793 344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVR 392 (414)
Q Consensus 344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 392 (414)
+|+++++|.|+|.++..+|+|++|+..|.+.|+.+|+|+.+...|..+.
T Consensus 66 ~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 66 NPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred CCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 9999999999999999999999999999999999999999999998887
No 41
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.48 E-value=1.2e-12 Score=108.63 Aligned_cols=116 Identities=15% Similarity=0.279 Sum_probs=107.3
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
+..+...|..+++.+++++|+..|++++.. .|....++.++|.++.+++++++|+..+++++.+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAY----------------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456889999999999999999999999998 7788899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy793 344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 395 (414)
Q Consensus 344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 395 (414)
+|++...++.+|.++..+|++++|+..|+++++++|++.........+...+
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988777766665543
No 42
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.46 E-value=2.7e-12 Score=133.58 Aligned_cols=113 Identities=18% Similarity=0.259 Sum_probs=103.0
Q ss_pred ccCCHHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHH
Q psy793 253 ETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKR 332 (414)
Q Consensus 253 ~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~ 332 (414)
..++.++....+..+++.|+.+|+.|+|++|+..|++||.+ .|. ...|.|+|.||+++++|++
T Consensus 116 ~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~----------------~p~-~~~~~n~a~~~~~l~~~~~ 178 (615)
T TIGR00990 116 ANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIEC----------------KPD-PVYYSNRAACHNALGDWEK 178 (615)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------CCc-hHHHHHHHHHHHHhCCHHH
Confidence 44557777888999999999999999999999999999998 443 4679999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy793 333 AINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ 382 (414)
Q Consensus 333 A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~ 382 (414)
|+.+|+++|+++|++.++|+++|.+|..+|+|++|+.+|.+++.+++.+.
T Consensus 179 Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~ 228 (615)
T TIGR00990 179 VVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN 228 (615)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999999999999999999999999888876543
No 43
>KOG0551|consensus
Probab=99.46 E-value=5.8e-13 Score=120.89 Aligned_cols=107 Identities=26% Similarity=0.418 Sum_probs=94.6
Q ss_pred HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 341 (414)
Q Consensus 262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 341 (414)
+.|..+++.||.||+.++|..|+.+|+++|.--- ......+.+|.|+|+|.+.+|+|+.|+.+|.+|+
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc------------~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al 146 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKC------------ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAAL 146 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcC------------CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999999999999997511 1135678899999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy793 342 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 380 (414)
Q Consensus 342 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 380 (414)
.++|.+.||++|-|.|++.+..+.+|..+++..++++-+
T Consensus 147 ~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 147 KLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 999999999999999999999988888888777765533
No 44
>KOG4626|consensus
Probab=99.46 E-value=1.8e-13 Score=132.97 Aligned_cols=123 Identities=20% Similarity=0.223 Sum_probs=81.2
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
+.++.+.||+|-..+.|+.|+.+|.+|+.+ .|+...++-|+|.+|..+|..+-||..|++||++
T Consensus 252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l----------------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~ 315 (966)
T KOG4626|consen 252 LDAYINLGNVYKEARIFDRAVSCYLRALNL----------------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL 315 (966)
T ss_pred hHHHhhHHHHHHHHhcchHHHHHHHHHHhc----------------CCcchhhccceEEEEeccccHHHHHHHHHHHHhc
Confidence 567899999999999999999999999988 5555555555555555555555555555555555
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793 344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE 402 (414)
Q Consensus 344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 402 (414)
+|+.+.||.++|.++..+|+..+|..+|.+||.+.|+.+.+..+|+.++.+.+.-++..
T Consensus 316 ~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~ 374 (966)
T KOG4626|consen 316 QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEAT 374 (966)
T ss_pred CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHH
Confidence 55555555555555555555555555555555555555555555555555555544443
No 45
>KOG4626|consensus
Probab=99.45 E-value=5.2e-13 Score=129.77 Aligned_cols=122 Identities=19% Similarity=0.222 Sum_probs=95.2
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
+....+.|..|-++|++++|+.+|++||++ +|....+|.|+|..|-.+|+.+.|++++++||.+
T Consensus 388 aaa~nNLa~i~kqqgnl~~Ai~~YkealrI----------------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 388 AAAHNNLASIYKQQGNLDDAIMCYKEALRI----------------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred hhhhhhHHHHHHhcccHHHHHHHHHHHHhc----------------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 344455566666666666666666666666 7888888888888888888888888888888888
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793 344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL 401 (414)
Q Consensus 344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~ 401 (414)
+|..+.|+-++|.+|...|+..+|+..|+.||++.|+.+++.-++..+.+-+-+....
T Consensus 452 nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 452 NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDY 509 (966)
T ss_pred CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccch
Confidence 8888888888888888888888888888888888888888888888887766555443
No 46
>KOG4642|consensus
Probab=99.39 E-value=1e-12 Score=114.12 Aligned_cols=115 Identities=23% Similarity=0.353 Sum_probs=103.6
Q ss_pred HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 341 (414)
Q Consensus 262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 341 (414)
..+..+++.||.+|..+.|..|+.+|.+||.+ .|..+..|.|+|.||+++++|+.+..+|.+|+
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~----------------nP~~~~Y~tnralchlk~~~~~~v~~dcrral 71 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICI----------------NPTVASYYTNRALCHLKLKHWEPVEEDCRRAL 71 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhc----------------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH
Confidence 45778999999999999999999999999999 88999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHH
Q psy793 342 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL-----PNDQQILKEIAFVR 392 (414)
Q Consensus 342 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~-----P~~~~~~~~l~~~~ 392 (414)
+++|+.++++|.+|.+.+....|++|+..+++|+.+. |.-..+...|..++
T Consensus 72 ql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak 127 (284)
T KOG4642|consen 72 QLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK 127 (284)
T ss_pred hcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 9999999999999999999999999999999997764 22345666665554
No 47
>KOG0376|consensus
Probab=99.39 E-value=3.5e-13 Score=128.49 Aligned_cols=120 Identities=26% Similarity=0.364 Sum_probs=115.1
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
+..++++++.+|+.+.|+.|+..|.+||++ +|+.+..+.|+|.++++.++|..|+.++.+|+++
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~l----------------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~ 67 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIEL----------------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL 67 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhc----------------CCcceeeechhhhhheeechhhhHHHHHHhhhhc
Confidence 667899999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q psy793 344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL 399 (414)
Q Consensus 344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~ 399 (414)
+|...++|+|+|.+++.++.+.+|+.+|++...+.|+++.+.+.+..|...+.+++
T Consensus 68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~ 123 (476)
T KOG0376|consen 68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEK 123 (476)
T ss_pred CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988776643
No 48
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.36 E-value=1e-11 Score=117.30 Aligned_cols=105 Identities=19% Similarity=0.164 Sum_probs=100.8
Q ss_pred HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793 263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 342 (414)
Q Consensus 263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 342 (414)
.+..+..+|..+...|++.+|+..|++|+++ .|....+|.++|.++..+|++++|+..++++++
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l----------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 126 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALAL----------------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE 126 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3667899999999999999999999999999 888899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy793 343 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ 383 (414)
Q Consensus 343 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~ 383 (414)
++|++..+++++|.+++..|++++|+.+|+++++++|+++.
T Consensus 127 l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 127 LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999999999999999999999974
No 49
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.32 E-value=2.2e-11 Score=126.85 Aligned_cols=138 Identities=9% Similarity=0.056 Sum_probs=81.9
Q ss_pred HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC-----------Cc-------HHHHHhhHHHHHHHHHHHHHHH
Q psy793 263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-----------QS-------KTQQKHFRSYYTAALLNMAAVQ 324 (414)
Q Consensus 263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~-----------~~-------~~~~~~~~~~~~~~~~nla~~~ 324 (414)
.+..+...|..++..|++++|+..|++++.+.+..... .. ..+.....|....+|+++|.++
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLH 409 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34567788999999999999999999999872211100 00 1112222344455555555555
Q ss_pred HHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q psy793 325 LKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLN 400 (414)
Q Consensus 325 ~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~ 400 (414)
+.+|++++|+.+++++++++|++..+++.+|.++..+|++++|+..|+++++..|+++.++..++.++...++..+
T Consensus 410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~ 485 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDE 485 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence 5555555555555555555555555555555555555555555555555555555555555555555555554433
No 50
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.31 E-value=4.2e-11 Score=105.95 Aligned_cols=107 Identities=18% Similarity=0.228 Sum_probs=98.5
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHH-HHhhC--HHHHHHHHHHH
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQ-LKFKA--YKRAINLCDDI 340 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~-~~l~~--~~~A~~~~~~a 340 (414)
+..+...|..+...|++++|+..|.+|+++ .|....++.++|.++ ...|+ +++|...++++
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l----------------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~a 136 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQL----------------RGENAELYAALATVLYYQAGQHMTPQTREMIDKA 136 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 566888999999999999999999999999 888999999999985 77787 59999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy793 341 LLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 386 (414)
Q Consensus 341 l~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~ 386 (414)
++++|++..+++.+|.+++.+|+|++|+..|+++++++|.+..-..
T Consensus 137 l~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~ 182 (198)
T PRK10370 137 LALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQ 182 (198)
T ss_pred HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Confidence 9999999999999999999999999999999999999987654433
No 51
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.29 E-value=1.2e-11 Score=89.90 Aligned_cols=66 Identities=27% Similarity=0.571 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q psy793 314 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN-NFEQGLQDYEQALDLLP 379 (414)
Q Consensus 314 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg-~~~~A~~~~~~al~l~P 379 (414)
+.+|.++|.+++.+++|++|+.+|+++++++|+++.+|+++|.|+..+| ++++|+++|+++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4678999999999999999999999999999999999999999999999 79999999999999998
No 52
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.26 E-value=8.7e-11 Score=94.72 Aligned_cols=112 Identities=13% Similarity=0.117 Sum_probs=97.9
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
++.+...|..+++.|+|++|+..|.+++...+. .+....+++.+|.++++.+++++|+..+++++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 68 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPK-------------STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK 68 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-------------ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 356889999999999999999999999987211 1233578899999999999999999999999999
Q ss_pred CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy793 344 EPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 388 (414)
Q Consensus 344 ~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l 388 (414)
+|++ +.+++.+|.++..++++++|+..|+++++..|++..+....
T Consensus 69 ~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 116 (119)
T TIGR02795 69 YPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ 116 (119)
T ss_pred CCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence 8875 67899999999999999999999999999999998766543
No 53
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.24 E-value=1e-10 Score=98.15 Aligned_cols=101 Identities=12% Similarity=0.090 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q psy793 284 QRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNN 363 (414)
Q Consensus 284 ~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~ 363 (414)
...|++|+++ +|.. +.++|.++..+|++++|+..|++++.++|.+..+|+.+|.++..+|+
T Consensus 13 ~~~~~~al~~----------------~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~ 73 (144)
T PRK15359 13 EDILKQLLSV----------------DPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKE 73 (144)
T ss_pred HHHHHHHHHc----------------CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 3568888887 5654 66899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793 364 FEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 403 (414)
Q Consensus 364 ~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 403 (414)
+++|+..|+++++++|++..++..++.++..+++..+...
T Consensus 74 ~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~ 113 (144)
T PRK15359 74 YTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLARE 113 (144)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999999999999888877543
No 54
>KOG1155|consensus
Probab=99.24 E-value=2.3e-10 Score=108.29 Aligned_cols=123 Identities=18% Similarity=0.254 Sum_probs=105.0
Q ss_pred HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793 265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 344 (414)
Q Consensus 265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 344 (414)
..+-..|..|...++...|+..|++|+++ .|.+-.+|+.+|++|--|+..-=|+-++++|+++.
T Consensus 365 ~aWTLmGHEyvEmKNt~AAi~sYRrAvdi----------------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k 428 (559)
T KOG1155|consen 365 SAWTLMGHEYVEMKNTHAAIESYRRAVDI----------------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK 428 (559)
T ss_pred HHHHHhhHHHHHhcccHHHHHHHHHHHhc----------------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC
Confidence 34555778888888888888888888887 88888899999999999999888999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793 345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 403 (414)
Q Consensus 345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 403 (414)
|++...|-.+|.||..+++.++|+++|++|+.....+..+...|++++.++++.++...
T Consensus 429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999888888888899999888888877654
No 55
>KOG1155|consensus
Probab=99.22 E-value=1e-10 Score=110.75 Aligned_cols=118 Identities=20% Similarity=0.242 Sum_probs=114.1
Q ss_pred hhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHH
Q psy793 270 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVK 349 (414)
Q Consensus 270 ~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~ 349 (414)
.||-|.-+++.++|+.+|++||++ +|....+|.-+|-=|+.|++-..|++.|++|++++|.+.+
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkL----------------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR 399 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKL----------------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR 399 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhc----------------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH
Confidence 799999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793 350 ALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 403 (414)
Q Consensus 350 a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 403 (414)
|||.+|++|..++-..=|+-+|++|+++.|+|+..+..|+.|+.++.+..+..|
T Consensus 400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK 453 (559)
T KOG1155|consen 400 AWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK 453 (559)
T ss_pred HHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999999999999999999999999999999999999988877765
No 56
>KOG1126|consensus
Probab=99.22 E-value=1.7e-11 Score=120.71 Aligned_cols=139 Identities=18% Similarity=0.147 Sum_probs=99.1
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC-----------C-------cHHHHHhhHHHHHHHHHHHHHHHH
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-----------Q-------SKTQQKHFRSYYTAALLNMAAVQL 325 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~-----------~-------~~~~~~~~~~~~~~~~~nla~~~~ 325 (414)
.+.+...||.|.-+++++.|+++|++|+.+-+...=+ + ..-.+...+|..-.+|+.+|.+|+
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~ 500 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL 500 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence 4568889999999999999999999999873211000 0 011222234566677777777777
Q ss_pred HhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793 326 KFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE 402 (414)
Q Consensus 326 ~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 402 (414)
|+++++.|.-.+++|++++|.+.......|..+.++|+.++|+..|++|+.++|.|+-.+...+.++..+.++.+.-
T Consensus 501 Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal 577 (638)
T KOG1126|consen 501 KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEAL 577 (638)
T ss_pred ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777666653
No 57
>PRK15331 chaperone protein SicA; Provisional
Probab=99.22 E-value=1.9e-10 Score=95.88 Aligned_cols=120 Identities=16% Similarity=0.260 Sum_probs=106.7
Q ss_pred HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793 263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 342 (414)
Q Consensus 263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 342 (414)
..+.+...|..+|..|+|++|...|+-...+ ++.....++.||.|+..+++|++|+..|..|..
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~----------------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~ 99 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIY----------------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT 99 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999988887 777788899999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q psy793 343 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL 399 (414)
Q Consensus 343 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~ 399 (414)
++++++...|+.|.|++.+|+.+.|+.+|+.+++ .|.+..+...-...+..+.+..
T Consensus 100 l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~~~ 155 (165)
T PRK15331 100 LLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALKTAE 155 (165)
T ss_pred cccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999 6887777766666655555443
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.21 E-value=2.6e-10 Score=99.19 Aligned_cols=101 Identities=21% Similarity=0.204 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Q psy793 260 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD 339 (414)
Q Consensus 260 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 339 (414)
..+.+.+...+|..|+..|++..|....++||++ +|....+|.-+|..|.++|+.+.|-+.|++
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~----------------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~Yrk 94 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH----------------DPSYYLAHLVRAHYYQKLGENDLADESYRK 94 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CcccHHHHHHHHHHHHHcCChhhHHHHHHH
Confidence 3456788899999999999999999999999999 777888888888888888888888888888
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy793 340 ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD 376 (414)
Q Consensus 340 al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~ 376 (414)
|+.++|++...+.+.|.-+..+|++++|...|++|+.
T Consensus 95 Alsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~ 131 (250)
T COG3063 95 ALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA 131 (250)
T ss_pred HHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh
Confidence 8888777644444444444444444444444444443
No 59
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.19 E-value=5.6e-10 Score=96.76 Aligned_cols=110 Identities=16% Similarity=0.167 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Q psy793 260 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD 339 (414)
Q Consensus 260 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 339 (414)
....+..+...|..+...|++++|+.+|++|+.+.+. .+....++.++|.++.++|+|++|+..+++
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 97 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED-------------PNDRSYILYNMGIIYASNGEHDKALEYYHQ 97 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-------------cchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455778999999999999999999999999987221 112356899999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCCH
Q psy793 340 ILLMEPNNVKALFRRGRAQVSMNN--------------FEQGLQDYEQALDLLPNDQ 382 (414)
Q Consensus 340 al~~~p~~~~a~~~~g~~~~~lg~--------------~~~A~~~~~~al~l~P~~~ 382 (414)
++.+.|.+..++..+|.++..+++ +++|+..+++++.++|++.
T Consensus 98 al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 98 ALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 999999999999999999999988 6888999999999999873
No 60
>KOG0624|consensus
Probab=99.17 E-value=3.7e-10 Score=103.26 Aligned_cols=113 Identities=22% Similarity=0.332 Sum_probs=104.0
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
+....+.|+.++.++++..|+.+|..|++. +|.+-.+++.+|.+|+.+|+-..|+.+++++|++
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~----------------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel 101 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG----------------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL 101 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----------------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc
Confidence 566889999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHH
Q psy793 344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ---QILKEIAFVR 392 (414)
Q Consensus 344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~---~~~~~l~~~~ 392 (414)
.|+..-|...+|.+++.+|+++.|..+|+++|+-+|++. +++..+..+.
T Consensus 102 KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~ 153 (504)
T KOG0624|consen 102 KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQ 153 (504)
T ss_pred CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHH
Confidence 999999999999999999999999999999999999764 4555554443
No 61
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.17 E-value=3.8e-10 Score=99.83 Aligned_cols=116 Identities=11% Similarity=0.033 Sum_probs=102.6
Q ss_pred hcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy793 277 LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGR 356 (414)
Q Consensus 277 ~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~ 356 (414)
.++.++++..++++++. +|.+...|.++|.+|..++++++|+..++++++++|+++.+++.+|.
T Consensus 52 ~~~~~~~i~~l~~~L~~----------------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA----------------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45667777777777777 88999999999999999999999999999999999999999999999
Q ss_pred HH-HHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy793 357 AQ-VSMNN--FEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARM 409 (414)
Q Consensus 357 ~~-~~lg~--~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~ 409 (414)
++ ...|+ +++|...++++++++|++..++..++.+....++..+..+ .+.++
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~-~~~~a 170 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE-LWQKV 170 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence 85 67787 5999999999999999999999999999998888877654 44443
No 62
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.15 E-value=5.7e-10 Score=119.94 Aligned_cols=113 Identities=7% Similarity=0.001 Sum_probs=60.5
Q ss_pred HHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC
Q psy793 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN 347 (414)
Q Consensus 268 ~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~ 347 (414)
...|..+.+.|++++|+..|.+|+.+ .|....++.++|.++..+|++++|+..++++++++|++
T Consensus 613 ~~LA~~l~~lG~~deA~~~l~~AL~l----------------~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~ 676 (987)
T PRK09782 613 VARATIYRQRHNVPAAVSDLRAALEL----------------EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD 676 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444444 45555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793 348 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR 396 (414)
Q Consensus 348 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 396 (414)
+.+++++|.++..+|++++|+..|+++++++|++..+....+.+..+..
T Consensus 677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~ 725 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRF 725 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHH
Confidence 5555555555555555555555555555555555555554444444333
No 63
>KOG0547|consensus
Probab=99.15 E-value=3.6e-10 Score=107.68 Aligned_cols=124 Identities=14% Similarity=0.246 Sum_probs=92.7
Q ss_pred HHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy793 261 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 340 (414)
Q Consensus 261 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 340 (414)
...+..+...|..+|-.|++..|...++++|.+ ++....+|..+|..|....+-.+-..++++|
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l----------------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A 386 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL----------------DPAFNSLYIKRAAAYADENQSEKMWKDFNKA 386 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc----------------CcccchHHHHHHHHHhhhhccHHHHHHHHHH
Confidence 456888999999999999999999999999998 5555666777777777777777777777777
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q psy793 341 LLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLN 400 (414)
Q Consensus 341 l~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~ 400 (414)
..+||.|+..||.||+.++-+++|++|+++|++|+.++|++.-+.-.+.-++.+..+..+
T Consensus 387 ~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~ 446 (606)
T KOG0547|consen 387 EDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAE 446 (606)
T ss_pred HhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777776665555555555444333
No 64
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.15 E-value=4.8e-10 Score=116.14 Aligned_cols=124 Identities=6% Similarity=-0.076 Sum_probs=119.0
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
++.++..|......|.+++|...+..++++ .|....++.+++.++.+++++++|+..++++|..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~----------------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR----------------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh----------------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 677899999999999999999999999999 8999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793 344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 403 (414)
Q Consensus 344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 403 (414)
+|+++.+++.+|.++.++|++++|+..|++++..+|+++.++..++.++..+++.++...
T Consensus 150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~ 209 (694)
T PRK15179 150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARD 209 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988887653
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.15 E-value=5.6e-10 Score=114.56 Aligned_cols=75 Identities=17% Similarity=0.181 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy793 310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 384 (414)
Q Consensus 310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~ 384 (414)
+|....++..+|.++..++++++|+..+++|++++|+++.+|+.+|.++..+|++++|+..|+++++++|.+..+
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~ 408 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAA 408 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhh
Confidence 444444555555555555555555555555555555555555555555555555555555555555555554433
No 66
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.14 E-value=5e-10 Score=84.99 Aligned_cols=99 Identities=33% Similarity=0.546 Sum_probs=90.2
Q ss_pred HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCC
Q psy793 266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP 345 (414)
Q Consensus 266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p 345 (414)
.+...|..++..|++++|+..+.++++. .+....++.++|.++...+++++|+..+++++.+.|
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL----------------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc----------------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3677899999999999999999999987 455557889999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy793 346 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 380 (414)
Q Consensus 346 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 380 (414)
.+..+++.+|.++..+|++++|...++++++.+|.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999998874
No 67
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.14 E-value=2.4e-10 Score=81.90 Aligned_cols=65 Identities=26% Similarity=0.449 Sum_probs=60.9
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy793 318 LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ 382 (414)
Q Consensus 318 ~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~ 382 (414)
+.+|..+++.|+|++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999985
No 68
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.13 E-value=2.2e-10 Score=86.78 Aligned_cols=81 Identities=22% Similarity=0.389 Sum_probs=72.2
Q ss_pred hcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHH--HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy793 277 LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSY--YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRR 354 (414)
Q Consensus 277 ~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~ 354 (414)
+++|+.|+..|+++++. .|. ....++++|.||+++++|++|+..+++ ++.++.+...++.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~----------------~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~ 64 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLEL----------------DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLL 64 (84)
T ss_dssp TT-HHHHHHHHHHHHHH----------------HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHH----------------CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHH
Confidence 58999999999999998 331 566788899999999999999999999 99999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q psy793 355 GRAQVSMNNFEQGLQDYEQA 374 (414)
Q Consensus 355 g~~~~~lg~~~~A~~~~~~a 374 (414)
|.|+..+|+|++|+..|+++
T Consensus 65 a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 65 ARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcC
Confidence 99999999999999999875
No 69
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.12 E-value=1.5e-10 Score=84.13 Aligned_cols=66 Identities=23% Similarity=0.380 Sum_probs=63.6
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHh
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-AYKRAINLCDDILL 342 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~A~~~~~~al~ 342 (414)
+..+...|..++..++|++|+.+|++|+++ +|....+|+++|.||.+++ ++.+|+.+++++|+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~----------------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL----------------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH----------------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 678999999999999999999999999999 8999999999999999999 79999999999999
Q ss_pred cCC
Q psy793 343 MEP 345 (414)
Q Consensus 343 ~~p 345 (414)
++|
T Consensus 67 l~P 69 (69)
T PF13414_consen 67 LDP 69 (69)
T ss_dssp HST
T ss_pred cCc
Confidence 998
No 70
>KOG1126|consensus
Probab=99.11 E-value=5.6e-10 Score=110.15 Aligned_cols=124 Identities=18% Similarity=0.319 Sum_probs=116.9
Q ss_pred HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793 265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 344 (414)
Q Consensus 265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 344 (414)
++++-.|.+|+|+++++.|..+|++|+.+ .|....+..-++..+.++|+.++|+..+++|+.++
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~I----------------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEI----------------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD 553 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcC----------------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence 45666899999999999999999999999 89999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy793 345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM 404 (414)
Q Consensus 345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~ 404 (414)
|.++-..|.+|.+++.+++|++|+..+++..++-|++..+...+++++.+++.....-++
T Consensus 554 ~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~ 613 (638)
T KOG1126|consen 554 PKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLH 613 (638)
T ss_pred CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHh
Confidence 999999999999999999999999999999999999999999999999999887765543
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.11 E-value=1.8e-09 Score=96.93 Aligned_cols=138 Identities=13% Similarity=0.114 Sum_probs=80.3
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC-----------Cc-------HHHHHhhHHHHHHHHHHHHHHHH
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-----------QS-------KTQQKHFRSYYTAALLNMAAVQL 325 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~-----------~~-------~~~~~~~~~~~~~~~~nla~~~~ 325 (414)
+..+...|..++..|++++|+..+++++...+..... .. ..+.....|....++.+++.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 5566777778888888888888887777652111000 00 00111112333445566666666
Q ss_pred HhhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793 326 KFKAYKRAINLCDDILLME--PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL 401 (414)
Q Consensus 326 ~l~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~ 401 (414)
.+|++++|+..+.+++... +.....++.+|.++..+|++++|...|+++++.+|++..++..++.++...++..+.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 6666666666666666542 334455666666666666666666666666666666666666666666665555443
No 72
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.11 E-value=1.1e-09 Score=117.80 Aligned_cols=110 Identities=17% Similarity=0.201 Sum_probs=99.0
Q ss_pred hcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy793 277 LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGR 356 (414)
Q Consensus 277 ~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~ 356 (414)
.|++++|+..|.+|+++ .|. ..++.++|.++.++|++++|+..+++++.++|+++.+++++|.
T Consensus 589 ~Gr~~eAl~~~~~AL~l----------------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~ 651 (987)
T PRK09782 589 PGQPELALNDLTRSLNI----------------APS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGY 651 (987)
T ss_pred CCCHHHHHHHHHHHHHh----------------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 36666666666666665 665 7899999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793 357 AQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 403 (414)
Q Consensus 357 ~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 403 (414)
++..+|++++|+..|+++++++|++..++..++.++..+++..+..+
T Consensus 652 aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 652 ALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999888877655
No 73
>KOG1308|consensus
Probab=99.11 E-value=6.3e-11 Score=108.39 Aligned_cols=107 Identities=23% Similarity=0.250 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHH
Q psy793 257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL 336 (414)
Q Consensus 257 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~ 336 (414)
.++..+++...+-.+..++..|.++.|+.+|..||.+ .|....+|.+++.++++++++..|+.+
T Consensus 107 Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~l----------------np~~a~l~~kr~sv~lkl~kp~~airD 170 (377)
T KOG1308|consen 107 TEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIEL----------------NPPLAILYAKRASVFLKLKKPNAAIRD 170 (377)
T ss_pred hHHHHHHHHHHHHHHHHHhcCcchhhhhccccccccc----------------CCchhhhcccccceeeeccCCchhhhh
Confidence 6678889999999999999999999999999999999 888899999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy793 337 CDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP 379 (414)
Q Consensus 337 ~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P 379 (414)
|..|+.++|+.++.|-.++.+...+|+|++|..+++.+++++-
T Consensus 171 ~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 171 CDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred hhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999874
No 74
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.11 E-value=2.8e-09 Score=97.16 Aligned_cols=113 Identities=16% Similarity=0.269 Sum_probs=98.8
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
+..+...|..+++.|+|++|+..|++++...+. .+....+++.+|.+|.+++++++|+..++++++.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-------------~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPF-------------SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 667899999999999999999999999987321 2344568999999999999999999999999999
Q ss_pred CCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy793 344 EPNNVK---ALFRRGRAQVSM--------NNFEQGLQDYEQALDLLPNDQQILKEIA 389 (414)
Q Consensus 344 ~p~~~~---a~~~~g~~~~~l--------g~~~~A~~~~~~al~l~P~~~~~~~~l~ 389 (414)
.|+++. +++.+|.++..+ +++++|+..|+++++.+|++..+...+.
T Consensus 100 ~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~ 156 (235)
T TIGR03302 100 HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK 156 (235)
T ss_pred CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence 998876 799999999987 8899999999999999999976654443
No 75
>PRK12370 invasion protein regulator; Provisional
Probab=99.10 E-value=8.8e-10 Score=113.12 Aligned_cols=132 Identities=11% Similarity=0.027 Sum_probs=108.0
Q ss_pred hcCHHHHHHHHHHHHHHHHhhccC-----------C-------cHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q psy793 277 LNRMHDAQRKYKKAVRYIKWYNQS-----------Q-------SKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD 338 (414)
Q Consensus 277 ~~~~~~A~~~y~~Al~~~~~~~~~-----------~-------~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~ 338 (414)
.+++.+|+..+++|+++-+..... . ..++...+.|....+++++|.++..+|++++|+..++
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 355899999999999874322111 0 1234556678888999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy793 339 DILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL-PNDQQILKEIAFVRKQMRHHLNLEKMTYARM 409 (414)
Q Consensus 339 ~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~ 409 (414)
++++++|.++.+++.++.+++.+|++++|+..++++++.+ |+++.++..++.++...++..+.... +.++
T Consensus 397 ~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~-~~~~ 467 (553)
T PRK12370 397 ECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKL-TKEI 467 (553)
T ss_pred HHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHH-HHHh
Confidence 9999999999888888888888999999999999999885 78899999999999888887776553 3443
No 76
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.09 E-value=3.1e-09 Score=91.74 Aligned_cols=109 Identities=18% Similarity=0.103 Sum_probs=92.0
Q ss_pred HHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy793 261 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 340 (414)
Q Consensus 261 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 340 (414)
...+..+...|..++..++|++|+..|.+|+.+.+. ......++.|+|.++.+++++++|+.+++++
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-------------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A 98 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID-------------PYDRSYILYNIGLIHTSNGEHTKALEYYFQA 98 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-------------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 346888999999999999999999999999988221 1224568999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHhhCCCCH
Q psy793 341 LLMEPNNVKALFRRGRAQV-------SMNNFE-------QGLQDYEQALDLLPNDQ 382 (414)
Q Consensus 341 l~~~p~~~~a~~~~g~~~~-------~lg~~~-------~A~~~~~~al~l~P~~~ 382 (414)
+.++|.+..++..+|.++. .+|+++ +|+..|++++..+|.+.
T Consensus 99 l~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 99 LERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 9999999999999999988 777876 66666667788888654
No 77
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.09 E-value=2.4e-09 Score=96.15 Aligned_cols=91 Identities=11% Similarity=0.078 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793 312 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV 391 (414)
Q Consensus 312 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 391 (414)
.....+.++|.++..++++++|+..+++++..+|++..+++.+|.++..+|++++|+..+++++++.|.+...+..+..+
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 212 (234)
T TIGR02521 133 QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRI 212 (234)
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHH
Q psy793 392 RKQMRHHLNLE 402 (414)
Q Consensus 392 ~~~~~~~~~~~ 402 (414)
....++..+..
T Consensus 213 ~~~~~~~~~a~ 223 (234)
T TIGR02521 213 ARALGDVAAAQ 223 (234)
T ss_pred HHHHhhHHHHH
Confidence 77766665543
No 78
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.08 E-value=1.3e-09 Score=90.35 Aligned_cols=94 Identities=16% Similarity=0.155 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy793 310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA 389 (414)
Q Consensus 310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~ 389 (414)
.|....+...+|.++++.+++++|+..+++++.++|.+..+++++|.++..+|++++|+..|+++++++|.+...+..++
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la 92 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAA 92 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 78888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy793 390 FVRKQMRHHLNLEK 403 (414)
Q Consensus 390 ~~~~~~~~~~~~~k 403 (414)
.++...++..+..+
T Consensus 93 ~~~~~~g~~~~A~~ 106 (135)
T TIGR02552 93 ECLLALGEPESALK 106 (135)
T ss_pred HHHHHcCCHHHHHH
Confidence 99998887666533
No 79
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.07 E-value=3.8e-09 Score=87.82 Aligned_cols=94 Identities=14% Similarity=0.103 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy793 311 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAF 390 (414)
Q Consensus 311 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~ 390 (414)
+......+.+|..+...|++++|...++.+..++|.+...|+++|.|+..+|+|++|+..|.+|+.++|+|+.+..+++.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 66778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy793 391 VRKQMRHHLNLEKM 404 (414)
Q Consensus 391 ~~~~~~~~~~~~k~ 404 (414)
|+-.+++.....+.
T Consensus 112 c~L~lG~~~~A~~a 125 (157)
T PRK15363 112 CYLACDNVCYAIKA 125 (157)
T ss_pred HHHHcCCHHHHHHH
Confidence 99998887776543
No 80
>KOG1125|consensus
Probab=99.05 E-value=4.2e-10 Score=109.42 Aligned_cols=118 Identities=13% Similarity=0.184 Sum_probs=106.8
Q ss_pred HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCC
Q psy793 266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP 345 (414)
Q Consensus 266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p 345 (414)
...-+|..|.-.++|+.|+.||+.||.. +|.+..+|..||+.+---.+..+|+..|.+||++.|
T Consensus 432 vQ~~LGVLy~ls~efdraiDcf~~AL~v----------------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP 495 (579)
T KOG1125|consen 432 VQSGLGVLYNLSGEFDRAVDCFEAALQV----------------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQP 495 (579)
T ss_pred HHhhhHHHHhcchHHHHHHHHHHHHHhc----------------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC
Confidence 3455899999999999999999999999 999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----------CHHHHHHHHHHHHHHHHHH
Q psy793 346 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN----------DQQILKEIAFVRKQMRHHL 399 (414)
Q Consensus 346 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~----------~~~~~~~l~~~~~~~~~~~ 399 (414)
..+.+.|++|.+++.+|.|++|++.|-.||.+.+. +..++..|..+...+++..
T Consensus 496 ~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 496 GYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 99999999999999999999999999999999765 2358888887776665554
No 81
>KOG4555|consensus
Probab=99.05 E-value=1.2e-08 Score=80.82 Aligned_cols=133 Identities=15% Similarity=0.095 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q psy793 259 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD 338 (414)
Q Consensus 259 ~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~ 338 (414)
..++....+-.+|..+...|+.+.|++.|.+||.+ -|....+|.|+|.++.-.++.++|+++++
T Consensus 38 ~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l----------------~P~raSayNNRAQa~RLq~~~e~ALdDLn 101 (175)
T KOG4555|consen 38 QAIKASRELELKAIALAEAGDLDGALELFGQALCL----------------APERASAYNNRAQALRLQGDDEEALDDLN 101 (175)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh----------------cccchHhhccHHHHHHHcCChHHHHHHHH
Confidence 34566777888999999999999999999999999 78888999999999999999999999999
Q ss_pred HHHhcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy793 339 DILLMEPNNV----KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQNG 413 (414)
Q Consensus 339 ~al~~~p~~~----~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~~ 413 (414)
+|+++.-+.. .+|..+|..|..+|+.+.|..+|+.|-++-.. -++..|-. +.-+...=.++...+|++.
T Consensus 102 ~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~--FAr~QLV~----lNPYAAlCN~MLa~~f~ql 174 (175)
T KOG4555|consen 102 KALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSK--FAREQLVE----LNPYAALCNQMLADAFDQL 174 (175)
T ss_pred HHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCH--HHHHHHHh----cChHHHHHHHHHHHHHHhc
Confidence 9999975543 47889999999999999999999999998643 33333322 2223333334555555554
No 82
>KOG1173|consensus
Probab=99.04 E-value=2.7e-09 Score=103.54 Aligned_cols=121 Identities=18% Similarity=0.333 Sum_probs=106.4
Q ss_pred HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793 265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 344 (414)
Q Consensus 265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 344 (414)
..+.+.|.++|..+.|.+|+..|++++..++..... .+.+...+.|+|-++.++++|.+|+.+++++|.+.
T Consensus 415 lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e---------~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 415 LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE---------KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc---------ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 347789999999999999999999999665433311 23467889999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy793 345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ 394 (414)
Q Consensus 345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 394 (414)
|.++..|-..|.+|..+|+++.|+..|.++|-++|+|..+...|..+...
T Consensus 486 ~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 486 PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998888888766554
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.04 E-value=3.5e-09 Score=100.02 Aligned_cols=114 Identities=10% Similarity=0.007 Sum_probs=99.1
Q ss_pred cCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy793 278 NRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRA 357 (414)
Q Consensus 278 ~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~ 357 (414)
...+.++..+.++|...+- . .+.....|+++|.+|..+|++++|+.+++++++++|+++.+|+.+|.+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~-~-----------~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 107 (296)
T PRK11189 40 LQQEVILARLNQILASRDL-T-----------DEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIY 107 (296)
T ss_pred hHHHHHHHHHHHHHccccC-C-----------cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4567888888888864211 0 245578899999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793 358 QVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 403 (414)
Q Consensus 358 ~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 403 (414)
+..+|++++|+..|+++++++|++..++.+++.++...++..+..+
T Consensus 108 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~ 153 (296)
T PRK11189 108 LTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQD 153 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999999999999999999999887777666543
No 84
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.04 E-value=2.7e-09 Score=94.72 Aligned_cols=122 Identities=15% Similarity=0.103 Sum_probs=114.9
Q ss_pred HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCC
Q psy793 266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP 345 (414)
Q Consensus 266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p 345 (414)
.+...|...+..|+|..|+..+.+|.++ .|.+..+|+-+|.+|.++|++++|...|.+++++.|
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l----------------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~ 165 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARL----------------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP 165 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhcc----------------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc
Confidence 3555999999999999999999999999 899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793 346 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 403 (414)
Q Consensus 346 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 403 (414)
.++.++-++|..++-.|+++.|.+.+..+....+.|..+..++..+....++..+.++
T Consensus 166 ~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 166 NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence 9999999999999999999999999999999999999999999999888887776654
No 85
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.03 E-value=1.2e-09 Score=102.44 Aligned_cols=124 Identities=21% Similarity=0.204 Sum_probs=103.1
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
+..+...|..+.+.|++++|+..|++|+++ .|....+...++.++..+|+++++...+....+.
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~----------------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~ 209 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALEL----------------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA 209 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-----------------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 445677899999999999999999999999 8888899999999999999999999999998888
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793 344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 403 (414)
Q Consensus 344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 403 (414)
.|.++..+..+|.++..+|++++|+..|+++++.+|+|+.++..++.++...++..+..+
T Consensus 210 ~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 210 APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp -HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred CcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999999999999999999999999999999999998877654
No 86
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.02 E-value=3.7e-09 Score=110.47 Aligned_cols=119 Identities=14% Similarity=0.135 Sum_probs=81.4
Q ss_pred HHHhhhHHhhhcCHHH----HHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793 267 IKNSGNEYFKLNRMHD----AQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 342 (414)
Q Consensus 267 ~~~~G~~~~~~~~~~~----A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 342 (414)
+...|..++..|++++ |+..|++++++ .|....++.++|.++.++|++++|+..++++++
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l----------------~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~ 312 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQF----------------NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA 312 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhh----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4445666666666653 56666666665 566667777777777777777777777777777
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793 343 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL 401 (414)
Q Consensus 343 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~ 401 (414)
++|+++.+++.+|.++..+|++++|+..|+++++.+|++..+...++.++...++..+.
T Consensus 313 l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA 371 (656)
T PRK15174 313 THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEA 371 (656)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHH
Confidence 77777777777777777777777777777777777777766555555555555544443
No 87
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.01 E-value=3.6e-09 Score=110.57 Aligned_cols=119 Identities=12% Similarity=0.050 Sum_probs=108.4
Q ss_pred HhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHH----HHHHHHHHHhcC
Q psy793 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKR----AINLCDDILLME 344 (414)
Q Consensus 269 ~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~----A~~~~~~al~~~ 344 (414)
..|..+++.|++++|+..|.++++. .|....++.++|.++..+|++++ |+..++++++++
T Consensus 217 ~l~~~l~~~g~~~eA~~~~~~al~~----------------~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 217 LAVDTLCAVGKYQEAIQTGESALAR----------------GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 3467788889999999999999887 67778899999999999999996 899999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793 345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 403 (414)
Q Consensus 345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 403 (414)
|+++.++..+|.++..+|++++|+..|+++++++|++..++..++.++...++..+...
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~ 339 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASD 339 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999988887766544
No 88
>KOG0624|consensus
Probab=98.96 E-value=2.9e-09 Score=97.53 Aligned_cols=127 Identities=13% Similarity=0.229 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q psy793 259 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD 338 (414)
Q Consensus 259 ~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~ 338 (414)
+.++.+......+......+.|.++++.+++.++.-+.. .+.....+-.++.|+.+-+++.+|+..|.
T Consensus 264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~------------~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEE------------TMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcc------------cceeeeeeheeeecccccCCHHHHHHHHH
Confidence 344555566667777888888888888888888761110 12334556678999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q psy793 339 DILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH 397 (414)
Q Consensus 339 ~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~ 397 (414)
++|.++|+++.++.-+|.+|+.-..|+.|+.+|++|.+++++|..++..+.++.+..++
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkq 390 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQ 390 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988887665443
No 89
>PLN02789 farnesyltranstransferase
Probab=98.96 E-value=2.4e-08 Score=94.65 Aligned_cols=115 Identities=11% Similarity=0.063 Sum_probs=94.0
Q ss_pred HHHHHhhhHHhhhc-CHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCH--HHHHHHHHHHH
Q psy793 265 RTIKNSGNEYFKLN-RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY--KRAINLCDDIL 341 (414)
Q Consensus 265 ~~~~~~G~~~~~~~-~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~--~~A~~~~~~al 341 (414)
..+..+|..+.+.+ ++++|+..+.+++.. .|....+|.+++.++.++++. ++++.+++++|
T Consensus 72 taW~~R~~iL~~L~~~l~eeL~~~~~~i~~----------------npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal 135 (320)
T PLN02789 72 TVWHFRRLCLEALDADLEEELDFAEDVAED----------------NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKIL 135 (320)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHHH----------------CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHH
Confidence 34555666666666 467777777777776 777788899999988888874 77888999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy793 342 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 395 (414)
Q Consensus 342 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 395 (414)
+++|.|..+|..++.++..+++|++|++++.++++.+|.|..++.....+...+
T Consensus 136 ~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 136 SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999998888876554
No 90
>KOG0553|consensus
Probab=98.95 E-value=5.4e-09 Score=94.57 Aligned_cols=94 Identities=18% Similarity=0.309 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy793 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 395 (414)
Q Consensus 316 ~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 395 (414)
-+-+-|.-+++.++|.+|+..|++||+++|.|+-.|.+||.+|..||.|+.|+++++.|+.++|....++..|+.++..+
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc
Confidence 34466777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q psy793 396 RHHLNLEKMTYARMF 410 (414)
Q Consensus 396 ~~~~~~~k~~~~~~f 410 (414)
++.++.... |+|-+
T Consensus 163 gk~~~A~~a-ykKaL 176 (304)
T KOG0553|consen 163 GKYEEAIEA-YKKAL 176 (304)
T ss_pred CcHHHHHHH-HHhhh
Confidence 999888776 66543
No 91
>PLN02789 farnesyltranstransferase
Probab=98.95 E-value=6.7e-08 Score=91.62 Aligned_cols=120 Identities=11% Similarity=0.080 Sum_probs=106.8
Q ss_pred HhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHhcCCCCHHHHH
Q psy793 274 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-AYKRAINLCDDILLMEPNNVKALF 352 (414)
Q Consensus 274 ~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~A~~~~~~al~~~p~~~~a~~ 352 (414)
+.+.+.+++|+..+.++|.+ .|....+|..++.++.+++ ++++++..++++++.+|++..+|+
T Consensus 47 l~~~e~serAL~lt~~aI~l----------------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~ 110 (320)
T PLN02789 47 YASDERSPRALDLTADVIRL----------------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWH 110 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHH----------------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhH
Confidence 56678999999999999999 8999999999999999998 689999999999999999999999
Q ss_pred HHHHHHHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy793 353 RRGRAQVSMNNF--EQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 410 (414)
Q Consensus 353 ~~g~~~~~lg~~--~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f 410 (414)
.++.++..+++. ++++..++++++++|.|..++...+.+...++...+ +-..+.+++
T Consensus 111 ~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~e-eL~~~~~~I 169 (320)
T PLN02789 111 HRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWED-ELEYCHQLL 169 (320)
T ss_pred HHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHH-HHHHHHHHH
Confidence 999999999874 789999999999999999999999999998877554 333444443
No 92
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.94 E-value=1.1e-08 Score=83.66 Aligned_cols=111 Identities=19% Similarity=0.287 Sum_probs=96.8
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
+..+...|...++.|+|.+|++.++......+. .+....+.+.++.+|++.++|++|+..+++-|++
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~-------------g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPF-------------GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-------------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 456889999999999999999999888776432 3445578889999999999999999999999999
Q ss_pred CCCCH---HHHHHHHHHHHHcCC---------------HHHHHHHHHHHHhhCCCCHHHHHH
Q psy793 344 EPNNV---KALFRRGRAQVSMNN---------------FEQGLQDYEQALDLLPNDQQILKE 387 (414)
Q Consensus 344 ~p~~~---~a~~~~g~~~~~lg~---------------~~~A~~~~~~al~l~P~~~~~~~~ 387 (414)
+|.++ .++|.+|.+++.+.. ..+|..+|++.++..|+...+...
T Consensus 77 hP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA 138 (142)
T PF13512_consen 77 HPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADA 138 (142)
T ss_pred CCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence 99886 589999999999987 899999999999999998766543
No 93
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.93 E-value=5.5e-09 Score=76.62 Aligned_cols=71 Identities=24% Similarity=0.490 Sum_probs=66.0
Q ss_pred HHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793 321 AAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV 391 (414)
Q Consensus 321 a~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 391 (414)
...|++.++|++|+.++++++.++|+++.+++.+|.++..+|++++|+.+|+++++..|++..+......+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 56789999999999999999999999999999999999999999999999999999999998887766543
No 94
>KOG2003|consensus
Probab=98.92 E-value=6.4e-09 Score=98.31 Aligned_cols=127 Identities=22% Similarity=0.247 Sum_probs=116.5
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
+..+.++||..|..|++++|.+.|++||.- +.....+++|++..+.++++.++|++++-+.-.+
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~n----------------dasc~ealfniglt~e~~~~ldeald~f~klh~i 553 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNN----------------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI 553 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcC----------------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH
Confidence 455778999999999999999999999988 8889999999999999999999999999999888
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy793 344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTY 406 (414)
Q Consensus 344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~ 406 (414)
--+++..++.+|.+|..+.+...|++.|-++..+-|+|+.++..|+.++.+-++..+.-.-.|
T Consensus 554 l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~y 616 (840)
T KOG2003|consen 554 LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHY 616 (840)
T ss_pred HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhh
Confidence 788999999999999999999999999999999999999999999999988877766544433
No 95
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.90 E-value=1.9e-08 Score=107.16 Aligned_cols=115 Identities=15% Similarity=0.135 Sum_probs=107.1
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
+..+...|..+.+.|++++|+..|++++++ .|....++.+++.++...+++++|+..++++++.
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~----------------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~ 112 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSL----------------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG 112 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 445788999999999999999999999999 7878888999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy793 344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 395 (414)
Q Consensus 344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 395 (414)
+|+++. ++.+|.++...|++++|+..|+++++++|++..++..++.++...
T Consensus 113 ~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~ 163 (765)
T PRK10049 113 APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNN 163 (765)
T ss_pred CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 999999 999999999999999999999999999999999998888876543
No 96
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.90 E-value=1.9e-08 Score=108.50 Aligned_cols=126 Identities=18% Similarity=0.237 Sum_probs=102.0
Q ss_pred HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCC
Q psy793 266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP 345 (414)
Q Consensus 266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p 345 (414)
.+...|..+.+.|++++|+..|++++.. .|....++.+++.++.+.++ .+|+..+++++.+.|
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~----------------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~ 834 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKK----------------APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP 834 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC
Confidence 3455666777777777777777777766 56677888888888888888 889999999999989
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy793 346 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARM 409 (414)
Q Consensus 346 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~ 409 (414)
+++..+..+|.++..+|++++|+..|+++++++|.++.+...+..++...++..+..+ .+.+|
T Consensus 835 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~ 897 (899)
T TIGR02917 835 NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK-ELDKL 897 (899)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence 8888888999999999999999999999999999999999999888888877665544 44444
No 97
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.89 E-value=1.9e-08 Score=111.95 Aligned_cols=121 Identities=21% Similarity=0.254 Sum_probs=96.9
Q ss_pred HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC
Q psy793 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN 346 (414)
Q Consensus 267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~ 346 (414)
+...|..+++.|++++|+..|++++++ .|....++.++|.++..+|++++|+..|+++++++|+
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~----------------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~ 417 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQV----------------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 345688889999999999999999998 6667778888888888888888888888888888888
Q ss_pred CHHHHHHHHH------------------------------------------HHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy793 347 NVKALFRRGR------------------------------------------AQVSMNNFEQGLQDYEQALDLLPNDQQI 384 (414)
Q Consensus 347 ~~~a~~~~g~------------------------------------------~~~~lg~~~~A~~~~~~al~l~P~~~~~ 384 (414)
+..++..++. ++...|++++|+..|+++++++|++..+
T Consensus 418 ~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~ 497 (1157)
T PRK11447 418 NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWL 497 (1157)
T ss_pred CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 8766654443 3445688888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy793 385 LKEIAFVRKQMRHHLNLEK 403 (414)
Q Consensus 385 ~~~l~~~~~~~~~~~~~~k 403 (414)
+..++.++...++..+..+
T Consensus 498 ~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 498 TYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHH
Confidence 8888888877777665543
No 98
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.88 E-value=2.4e-08 Score=90.96 Aligned_cols=126 Identities=11% Similarity=0.114 Sum_probs=106.1
Q ss_pred HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHh--------hCHHHHHHH
Q psy793 265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF--------KAYKRAINL 336 (414)
Q Consensus 265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l--------~~~~~A~~~ 336 (414)
..+...|..+++.+++++|+..|+++++..+. .+....+++.+|.++.++ +++++|+..
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-------------~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~ 137 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-------------HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEA 137 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-------------CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHH
Confidence 45688899999999999999999999998332 122234788999999887 899999999
Q ss_pred HHHHHhcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHHH
Q psy793 337 CDDILLMEPNNVKAL-----------------FRRGRAQVSMNNFEQGLQDYEQALDLLPND---QQILKEIAFVRKQMR 396 (414)
Q Consensus 337 ~~~al~~~p~~~~a~-----------------~~~g~~~~~lg~~~~A~~~~~~al~l~P~~---~~~~~~l~~~~~~~~ 396 (414)
+++++..+|++..++ +.+|.+|+.+|++++|+..|+++++..|++ ..++..++.++..++
T Consensus 138 ~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg 217 (235)
T TIGR03302 138 FQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLG 217 (235)
T ss_pred HHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcC
Confidence 999999999986442 467888999999999999999999997765 588999999999988
Q ss_pred HHHHHHH
Q psy793 397 HHLNLEK 403 (414)
Q Consensus 397 ~~~~~~k 403 (414)
+..+..+
T Consensus 218 ~~~~A~~ 224 (235)
T TIGR03302 218 LKDLAQD 224 (235)
T ss_pred CHHHHHH
Confidence 8877654
No 99
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.88 E-value=6.5e-09 Score=75.07 Aligned_cols=68 Identities=21% Similarity=0.301 Sum_probs=62.8
Q ss_pred HHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793 324 QLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV 391 (414)
Q Consensus 324 ~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 391 (414)
+++.|+|++|+..+++++..+|++..+++.+|.||..+|++++|...+++++..+|+++.++..++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 46789999999999999999999999999999999999999999999999999999998888877654
No 100
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.87 E-value=4.4e-08 Score=90.20 Aligned_cols=114 Identities=14% Similarity=0.127 Sum_probs=95.4
Q ss_pred HHHHHhhhHH-hhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 265 RTIKNSGNEY-FKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 265 ~~~~~~G~~~-~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
...+..+..+ ++.|+|++|+..|++.+...+. .+....+++.+|.+|+..++|++|+..+++++..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~-------------s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~ 209 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD-------------STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN 209 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456666665 6679999999999999998332 2233578999999999999999999999999988
Q ss_pred CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793 344 EPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV 391 (414)
Q Consensus 344 ~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 391 (414)
.|++ +.+++.+|.++..+|++++|+..|+++++..|+...+.....++
T Consensus 210 yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 210 YPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred CCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 8774 67899999999999999999999999999999988766554443
No 101
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.87 E-value=3e-08 Score=107.05 Aligned_cols=123 Identities=26% Similarity=0.391 Sum_probs=106.8
Q ss_pred HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793 263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 342 (414)
Q Consensus 263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 342 (414)
.+..+...|..++..|++++|+..|+++++. .|....++..+|.+++..+++++|+..++++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 187 (899)
T TIGR02917 124 AAELLALRGLAYLGLGQLELAQKSYEQALAI----------------DPRSLYAKLGLAQLALAENRFDEARALIDEVLT 187 (899)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------CCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4667888999999999999999999999988 566677888899999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793 343 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL 401 (414)
Q Consensus 343 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~ 401 (414)
.+|.+..+++.+|.++..+|++++|+..|+++++++|.+..++..+..++...++..+.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A 246 (899)
T TIGR02917 188 ADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEA 246 (899)
T ss_pred hCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999888888888877766655444
No 102
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.86 E-value=5.9e-08 Score=95.24 Aligned_cols=116 Identities=15% Similarity=0.152 Sum_probs=67.7
Q ss_pred HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCC
Q psy793 266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP 345 (414)
Q Consensus 266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p 345 (414)
.+...|..+++.+++++|+..|.++++. .|....+++.+|.++.+.|++++|+..+++++..+|
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 245 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAA----------------DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDP 245 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhH----------------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence 3456677777777777777777777766 333444555566666666666666666666666555
Q ss_pred CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q psy793 346 NN-VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 398 (414)
Q Consensus 346 ~~-~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~ 398 (414)
.+ ..++..++.+|..+|++++|+..++++++..|+...+ ..++.++...++.
T Consensus 246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~ 298 (389)
T PRK11788 246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGP 298 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCH
Confidence 44 2345555666666666666666666666666554333 4444444444333
No 103
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.84 E-value=5.3e-08 Score=95.59 Aligned_cols=90 Identities=13% Similarity=0.163 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHH
Q psy793 314 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND-QQILKEIAFVR 392 (414)
Q Consensus 314 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~-~~~~~~l~~~~ 392 (414)
...+.++|.++.+.+++++|+..++++++.+|++..+++.+|.++..+|++++|+..|+++++.+|.+ ..++..+..++
T Consensus 180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~ 259 (389)
T PRK11788 180 AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECY 259 (389)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHH
Confidence 34577888888899999999999999999988888899999999999999999999999999888876 45567777777
Q ss_pred HHHHHHHHHHH
Q psy793 393 KQMRHHLNLEK 403 (414)
Q Consensus 393 ~~~~~~~~~~k 403 (414)
...++..+..+
T Consensus 260 ~~~g~~~~A~~ 270 (389)
T PRK11788 260 QALGDEAEGLE 270 (389)
T ss_pred HHcCCHHHHHH
Confidence 77666655544
No 104
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.83 E-value=2.9e-08 Score=110.55 Aligned_cols=125 Identities=14% Similarity=0.170 Sum_probs=73.7
Q ss_pred HhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC-----------CcHH-------HHHhhHHHH--------------HHH
Q psy793 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-----------QSKT-------QQKHFRSYY--------------TAA 316 (414)
Q Consensus 269 ~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~-----------~~~~-------~~~~~~~~~--------------~~~ 316 (414)
..|..++..|++++|+..|+++++..+..... ...+ +.....|.. ..+
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 45777888888888888888888762211100 0000 001111110 011
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy793 317 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK 393 (414)
Q Consensus 317 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 393 (414)
...++.++++.+++++|+..++++++++|+++.+++.+|.++..+|++++|++.|+++++++|++..++..+..++.
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 23345555666666666666666666666666677777777777777777777777777777777776666666654
No 105
>KOG0550|consensus
Probab=98.83 E-value=4.9e-08 Score=91.65 Aligned_cols=137 Identities=13% Similarity=0.159 Sum_probs=118.0
Q ss_pred HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793 263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 342 (414)
Q Consensus 263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 342 (414)
.+..++-+|..++-..+.+.|+.+|+++|++-+ +..........+.....+-+.|.-.++.|+|+.|.+.|+.+|.
T Consensus 202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldp----dh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~ 277 (486)
T KOG0550|consen 202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDP----DHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN 277 (486)
T ss_pred hhHHHHhcccccccccchHHHHHHHhhhhccCh----hhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence 466788899999999999999999999999822 2223333444566678889999999999999999999999999
Q ss_pred cCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793 343 MEPNN----VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 403 (414)
Q Consensus 343 ~~p~~----~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 403 (414)
++|++ ++.|+++|.+...+|+..+|+.+.+.|+.++|....++...+.|+..+++.++.-+
T Consensus 278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~ 342 (486)
T KOG0550|consen 278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVE 342 (486)
T ss_pred CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99986 57899999999999999999999999999999999999999999988888877544
No 106
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.83 E-value=1.4e-07 Score=83.90 Aligned_cols=125 Identities=18% Similarity=0.269 Sum_probs=97.7
Q ss_pred HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793 263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 342 (414)
Q Consensus 263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 342 (414)
.+..+...|..++..|+|.+|+..|++.+...+. .+....+.+.+|.++++.++|.+|+..+++.++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~-------------s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN-------------SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-------------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-------------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3677999999999999999999999999987543 345667889999999999999999999999999
Q ss_pred cCCCCH---HHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHHHH
Q psy793 343 MEPNNV---KALFRRGRAQVSMN-----------NFEQGLQDYEQALDLLPNDQ---QILKEIAFVRKQMRHHLN 400 (414)
Q Consensus 343 ~~p~~~---~a~~~~g~~~~~lg-----------~~~~A~~~~~~al~l~P~~~---~~~~~l~~~~~~~~~~~~ 400 (414)
..|+++ .++|.+|.+++.+. ...+|+..|+..++..|+.+ .+...+..+...+.+.+-
T Consensus 71 ~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~ 145 (203)
T PF13525_consen 71 LYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHEL 145 (203)
T ss_dssp H-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 999875 58999999987664 34589999999999999985 455556666555554443
No 107
>KOG2076|consensus
Probab=98.83 E-value=9.5e-08 Score=97.46 Aligned_cols=122 Identities=12% Similarity=0.178 Sum_probs=84.8
Q ss_pred HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793 263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 342 (414)
Q Consensus 263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 342 (414)
.+..+..+||.+|.+|++++|...+.++|+. +|....+|+-||.||..+|+..+|+...-.|--
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq----------------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH 201 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQ----------------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH 201 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----------------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 3677899999999999999999999999998 566666666666666666666666666666666
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q psy793 343 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLN 400 (414)
Q Consensus 343 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~ 400 (414)
++|.+..-|.+++.....+|++..|.-+|.+|++++|.+.........++.+.++...
T Consensus 202 L~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~ 259 (895)
T KOG2076|consen 202 LNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKR 259 (895)
T ss_pred cCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHH
Confidence 6666666666666666666666666666666666666665555555555555555443
No 108
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.81 E-value=2.3e-07 Score=84.75 Aligned_cols=125 Identities=14% Similarity=0.220 Sum_probs=101.2
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
+..+...|..+++.|+|++|+..|++.+...+. .+....+.+++|.+|+++++|++|+..+++.++.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-------------s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-------------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 445788999999999999999999999987332 3455567899999999999999999999999999
Q ss_pred CCCCH---HHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHHH
Q psy793 344 EPNNV---KALFRRGRAQVSMN---------------N---FEQGLQDYEQALDLLPNDQ---QILKEIAFVRKQMRHHL 399 (414)
Q Consensus 344 ~p~~~---~a~~~~g~~~~~lg---------------~---~~~A~~~~~~al~l~P~~~---~~~~~l~~~~~~~~~~~ 399 (414)
.|+++ .++|.+|.++..++ | -.+|+..|++.++..|+.. ++...+..+...+.+.+
T Consensus 99 ~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e 178 (243)
T PRK10866 99 NPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE 178 (243)
T ss_pred CcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH
Confidence 98775 58999999976664 1 2578899999999999874 56666666666666555
Q ss_pred HH
Q psy793 400 NL 401 (414)
Q Consensus 400 ~~ 401 (414)
-.
T Consensus 179 ~~ 180 (243)
T PRK10866 179 LS 180 (243)
T ss_pred HH
Confidence 43
No 109
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.81 E-value=7e-08 Score=100.25 Aligned_cols=114 Identities=6% Similarity=-0.025 Sum_probs=101.9
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
+....+.+..+.+.+++++|+..+++++.. .|.....++.+|.|+.++|+|++|+..|++++..
T Consensus 120 ~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~----------------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~ 183 (694)
T PRK15179 120 SEAFILMLRGVKRQQGIEAGRAEIELYFSG----------------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ 183 (694)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhc----------------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc
Confidence 566788999999999999999999999999 8999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHH
Q psy793 344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ-QILKEIAFVRK 393 (414)
Q Consensus 344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~-~~~~~l~~~~~ 393 (414)
+|++++++..+|.+++.+|+.++|...|++|++....-. .....+..+..
T Consensus 184 ~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 234 (694)
T PRK15179 184 HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNA 234 (694)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999874433 33444444433
No 110
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.80 E-value=1.2e-07 Score=71.61 Aligned_cols=88 Identities=24% Similarity=0.459 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy793 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 395 (414)
Q Consensus 316 ~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 395 (414)
+++++|.++...+++++|+..++++++..|.+..+++.+|.++...+++++|+..|++++++.|.+..++..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHH
Q psy793 396 RHHLNLEK 403 (414)
Q Consensus 396 ~~~~~~~k 403 (414)
++..+..+
T Consensus 82 ~~~~~a~~ 89 (100)
T cd00189 82 GKYEEALE 89 (100)
T ss_pred HhHHHHHH
Confidence 87665443
No 111
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.80 E-value=5.2e-08 Score=85.01 Aligned_cols=119 Identities=19% Similarity=0.136 Sum_probs=71.2
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
...+..++..|.+.|+.+.|-+.|++|+.+ +|....+++|.|+-+..+|+|++|...+++|+..
T Consensus 69 ~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl----------------~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~ 132 (250)
T COG3063 69 YLAHLVRAHYYQKLGENDLADESYRKALSL----------------APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD 132 (250)
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHhc----------------CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC
Confidence 344555666666666666666666666666 5555566666666666666666666666666643
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q psy793 344 --EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 398 (414)
Q Consensus 344 --~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~ 398 (414)
.+.-+..+-++|.|.++.|+++.|..+|+++++++|+++.....+...+...+++
T Consensus 133 P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 133 PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDY 189 (250)
T ss_pred CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccc
Confidence 2334556666666666666666666666666666666665555555554444433
No 112
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.79 E-value=1.2e-08 Score=73.07 Aligned_cols=64 Identities=13% Similarity=0.253 Sum_probs=59.4
Q ss_pred HhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCH
Q psy793 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNV 348 (414)
Q Consensus 269 ~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~ 348 (414)
.+|..+++.|+|++|+..|+++++. .|....+++.+|.|+..+|++++|+..++++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~----------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ----------------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC----------------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5789999999999999999999998 788999999999999999999999999999999999875
No 113
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.77 E-value=1.7e-07 Score=79.15 Aligned_cols=108 Identities=24% Similarity=0.350 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhC----------HHHHHHHHHHHHhcCCCCHH
Q psy793 280 MHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA----------YKRAINLCDDILLMEPNNVK 349 (414)
Q Consensus 280 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~----------~~~A~~~~~~al~~~p~~~~ 349 (414)
|+.|.+.|+..... +|.+...++|=|.+++.+.+ +++|+.-+++||.++|+...
T Consensus 7 FE~ark~aea~y~~----------------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hd 70 (186)
T PF06552_consen 7 FEHARKKAEAAYAK----------------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHD 70 (186)
T ss_dssp HHHHHHHHHHHHHH-----------------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHHHHHh----------------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHH
Confidence 67888888888877 78888888888888887754 67889999999999999999
Q ss_pred HHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793 350 ALFRRGRAQVSMNN-----------FEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 403 (414)
Q Consensus 350 a~~~~g~~~~~lg~-----------~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 403 (414)
|++.+|.+|..++. |++|..+|++|.+.+|+|...+.-|......-.-..+.+|
T Consensus 71 Alw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~e~~~ 135 (186)
T PF06552_consen 71 ALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAPELHMEIHK 135 (186)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999998865 7899999999999999999999888877544333344333
No 114
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.74 E-value=1.3e-07 Score=81.53 Aligned_cols=112 Identities=15% Similarity=0.093 Sum_probs=91.9
Q ss_pred hhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC---
Q psy793 271 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN--- 347 (414)
Q Consensus 271 G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~--- 347 (414)
.+.+|-.+.|..+...+.+.++. .. ......+|+++|.++..+++|++|+..+++++.+.|+.
T Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~---~~-----------~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 71 (168)
T CHL00033 6 RNDNFIDKTFTIVADILLRILPT---TS-----------GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDR 71 (168)
T ss_pred ccccccccccccchhhhhHhccC---Cc-----------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhh
Confidence 44556666677776666444432 11 34567889999999999999999999999999997653
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793 348 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR 396 (414)
Q Consensus 348 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 396 (414)
+.+|+++|.++..+|++++|+..|+++++++|.+...+..++.++..++
T Consensus 72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 4589999999999999999999999999999999999999998888444
No 115
>KOG1125|consensus
Probab=98.73 E-value=5.4e-08 Score=94.97 Aligned_cols=96 Identities=16% Similarity=0.178 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793 312 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV 391 (414)
Q Consensus 312 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 391 (414)
.+..++..||..|...++|++|+.+++.||..+|++...|.|+|-++..-.+.++|+..|++|++|.|+...++++|+..
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS 507 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGIS 507 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhh
Confidence 55688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy793 392 RKQMRHHLNLEKMTYA 407 (414)
Q Consensus 392 ~~~~~~~~~~~k~~~~ 407 (414)
...++.+++.-+....
T Consensus 508 ~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 508 CMNLGAYKEAVKHLLE 523 (579)
T ss_pred hhhhhhHHHHHHHHHH
Confidence 9999999998876655
No 116
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.73 E-value=1.1e-07 Score=92.14 Aligned_cols=87 Identities=17% Similarity=0.268 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793 317 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR 396 (414)
Q Consensus 317 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 396 (414)
+...|..++..++|++|+..|++||+++|+++.+|+.+|.+|..+|++++|+.++++|++++|++..++..++.++..++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHH
Q psy793 397 HHLNLEK 403 (414)
Q Consensus 397 ~~~~~~k 403 (414)
+..+..+
T Consensus 85 ~~~eA~~ 91 (356)
T PLN03088 85 EYQTAKA 91 (356)
T ss_pred CHHHHHH
Confidence 8876654
No 117
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.72 E-value=1.9e-07 Score=80.88 Aligned_cols=89 Identities=19% Similarity=0.255 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy793 310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 386 (414)
Q Consensus 310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~ 386 (414)
.+....+++++|.++...+++++|+.++++++.+.|+. ..+++.+|.++..+|++++|+..|++++++.|++..++.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 56777899999999999999999999999999887653 468999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy793 387 EIAFVRKQMRHH 398 (414)
Q Consensus 387 ~l~~~~~~~~~~ 398 (414)
.++.++..+++.
T Consensus 111 ~lg~~~~~~g~~ 122 (172)
T PRK02603 111 NIAVIYHKRGEK 122 (172)
T ss_pred HHHHHHHHcCCh
Confidence 999888776653
No 118
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.72 E-value=3.2e-08 Score=95.30 Aligned_cols=69 Identities=13% Similarity=0.107 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy793 310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA---LFRRGRAQVSMNNFEQGLQDYEQALDLL 378 (414)
Q Consensus 310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a---~~~~g~~~~~lg~~~~A~~~~~~al~l~ 378 (414)
+|....+++|+|.+|+++++|++|+..|++||+++|++..+ ||++|.||..+|++++|+.+|++|+++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 78889999999999999999999999999999999999865 9999999999999999999999999983
No 119
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=2.8e-07 Score=88.63 Aligned_cols=132 Identities=11% Similarity=0.034 Sum_probs=116.2
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
....+-.+..++..++++.|...++..+.. .|.+...+.-++..+++.++..+|++.+++++.+
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~----------------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l 369 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA----------------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL 369 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 445666777888888888888888887766 6777888888999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy793 344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ 411 (414)
Q Consensus 344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~ 411 (414)
+|+.....+++|.+|+..|++.+|+..++..+.-+|+|+..|..|+..+..+++..+........+|-
T Consensus 370 ~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 370 DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999888876665555543
No 120
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.71 E-value=3.7e-08 Score=73.21 Aligned_cols=67 Identities=25% Similarity=0.440 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793 311 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLME-------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 377 (414)
Q Consensus 311 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~-------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 377 (414)
|....++.++|.+|..+|+|++|+.++++++++. |.-+.+++++|.++..+|++++|+..+++|+++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5567899999999999999999999999999762 223678999999999999999999999999986
No 121
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.71 E-value=1.3e-07 Score=100.81 Aligned_cols=109 Identities=11% Similarity=0.045 Sum_probs=101.3
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
...+...|..+...|++++|+..+++++.. .|....++.++|.++...|++++|+..+++++.+
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~----------------~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYN----------------APGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 345667888999999999999999999998 7777899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy793 344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 388 (414)
Q Consensus 344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l 388 (414)
+|++..+++.+|.++..++++++|.+.++++++..|+++.+...-
T Consensus 423 ~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~ 467 (765)
T PRK10049 423 EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLA 467 (765)
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999776543
No 122
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.4e-07 Score=84.54 Aligned_cols=115 Identities=23% Similarity=0.287 Sum_probs=100.7
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhh---CHHHHHHHHHHH
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK---AYKRAINLCDDI 340 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~---~~~~A~~~~~~a 340 (414)
++.+.-.|..|+..+++..|...|.+|+++ .+.+..++..+|.++.... .-.++...++++
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL----------------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRL----------------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 455777999999999999999999999999 7788888888888877755 477899999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy793 341 LLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ 394 (414)
Q Consensus 341 l~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 394 (414)
|.+||.++.+.+.+|..++..|+|.+|+..+++.+++.|.+..-...+......
T Consensus 220 l~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~ 273 (287)
T COG4235 220 LALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIAR 273 (287)
T ss_pred HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999886655555544433
No 123
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.71 E-value=1.3e-07 Score=70.21 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=62.7
Q ss_pred HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 341 (414)
Q Consensus 262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 341 (414)
..+..+.+.|..++..|+|++|+.+|++|+.+...... ..+..+.++.|+|.|+..+|++++|++++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD---------DHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT---------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC---------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999999999999999999999543331 145668899999999999999999999999999
Q ss_pred hc
Q psy793 342 LM 343 (414)
Q Consensus 342 ~~ 343 (414)
++
T Consensus 74 ~i 75 (78)
T PF13424_consen 74 DI 75 (78)
T ss_dssp HH
T ss_pred hh
Confidence 76
No 124
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=7.4e-08 Score=83.15 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=102.5
Q ss_pred HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 341 (414)
Q Consensus 262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 341 (414)
+.|..++++|+.|=..|-+.-|.-.|.+++.+ .|..+.+++-+|..+...++|+.|.+.++.++
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai----------------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ 126 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAI----------------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL 126 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc----------------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHh
Confidence 45778999999999999999999999999999 89999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy793 342 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL 385 (414)
Q Consensus 342 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~ 385 (414)
++||.+..++.++|.+++.-|+|+-|..++.+-.+-+|+|+---
T Consensus 127 ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~ 170 (297)
T COG4785 127 ELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRS 170 (297)
T ss_pred ccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHH
Confidence 99999999999999999999999999999999999999997433
No 125
>KOG4162|consensus
Probab=98.68 E-value=8.9e-08 Score=96.20 Aligned_cols=115 Identities=10% Similarity=0.043 Sum_probs=66.0
Q ss_pred HhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCH
Q psy793 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNV 348 (414)
Q Consensus 269 ~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~ 348 (414)
..+..+.+.+.-++|..+..+|-.+ .+.....|+.+|.++...|++.+|.+.|..|+.++|+++
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~----------------~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv 718 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKI----------------DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV 718 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhc----------------chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc
Confidence 3444444444445555555555555 455555566666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHcCCHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q psy793 349 KALFRRGRAQVSMNNFEQGLQ--DYEQALDLLPNDQQILKEIAFVRKQMRHHL 399 (414)
Q Consensus 349 ~a~~~~g~~~~~lg~~~~A~~--~~~~al~l~P~~~~~~~~l~~~~~~~~~~~ 399 (414)
.+.-.+|.++...|+-.-|.+ .+..+++++|.|.++|+.++.+..+.++..
T Consensus 719 ~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 719 PSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchH
Confidence 666666666666655555555 556666666666666666666655555544
No 126
>KOG2002|consensus
Probab=98.67 E-value=4.1e-07 Score=93.65 Aligned_cols=119 Identities=13% Similarity=0.219 Sum_probs=107.9
Q ss_pred HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793 265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 344 (414)
Q Consensus 265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 344 (414)
..+.-.++-+|-.|+|..+...+.-|+.... ..+..+..++.+|.+|..+|+|++|..+|.++++.+
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~-------------~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~ 337 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTE-------------NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD 337 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhh-------------hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC
Confidence 4455688889999999999999999987621 156778889999999999999999999999999999
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793 345 PNN-VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR 396 (414)
Q Consensus 345 p~~-~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 396 (414)
+++ .-+++.+|+.|...|+++.|+.+|+++++.+|++.+....|+.++....
T Consensus 338 ~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 338 NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA 390 (1018)
T ss_pred CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence 998 8899999999999999999999999999999999999999999998774
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.66 E-value=3.4e-07 Score=81.51 Aligned_cols=99 Identities=17% Similarity=0.221 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy793 310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA 389 (414)
Q Consensus 310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~ 389 (414)
.+....++.-++...+..|+|.+|+..+.++..++|++.++|.-+|.+|.++|++++|...|.+++++.|+++.+..+++
T Consensus 96 ~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlg 175 (257)
T COG5010 96 YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLG 175 (257)
T ss_pred CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHH
Confidence 45555566668999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy793 390 FVRKQMRHHLNLEKMTYAR 408 (414)
Q Consensus 390 ~~~~~~~~~~~~~k~~~~~ 408 (414)
..+..-++.+..++....-
T Consensus 176 ms~~L~gd~~~A~~lll~a 194 (257)
T COG5010 176 MSLLLRGDLEDAETLLLPA 194 (257)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 9999888888887765543
No 128
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.66 E-value=3.1e-07 Score=97.22 Aligned_cols=121 Identities=12% Similarity=-0.013 Sum_probs=70.0
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC-----------CcHHHHHhh-----H--HHHHHHHHHHHHHHH
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-----------QSKTQQKHF-----R--SYYTAALLNMAAVQL 325 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~-----------~~~~~~~~~-----~--~~~~~~~~nla~~~~ 325 (414)
+...+..+...+++|+|..|+..|+++++..+..... ...++.... . +.....+..+|.++.
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR 113 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 4467889999999999999999999999884332100 000111100 0 111222233344555
Q ss_pred HhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy793 326 KFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 384 (414)
Q Consensus 326 ~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~ 384 (414)
.+|+|++|++.++++++.+|+++.+++.++.++..+++.++|+..++++...+|.+...
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~ 172 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY 172 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH
Confidence 55666666666666666666666555555555566666666666666666665554443
No 129
>KOG1128|consensus
Probab=98.66 E-value=1.1e-07 Score=95.17 Aligned_cols=123 Identities=11% Similarity=0.185 Sum_probs=107.2
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
+++.+..|+..+.+++|++|.++++.++++ .|.....|+++|.|.+++++++.|.++|.+++.+
T Consensus 485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~----------------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL 548 (777)
T KOG1128|consen 485 ARAQRSLALLILSNKDFSEADKHLERSLEI----------------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL 548 (777)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHhhc----------------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc
Confidence 344455666677789999999999999999 8899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793 344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE 402 (414)
Q Consensus 344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 402 (414)
+|++..+|.+++.+|..+++-.+|...++.|++.+-++..++.+...+..+++...+.-
T Consensus 549 ~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 549 EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHH
Confidence 99999999999999999999999999999999999888888888888877777665543
No 130
>KOG1840|consensus
Probab=98.64 E-value=3.6e-07 Score=90.88 Aligned_cols=134 Identities=19% Similarity=0.206 Sum_probs=111.2
Q ss_pred HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 341 (414)
Q Consensus 262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 341 (414)
..+..+...|..|...++|.+|+..|++|+.+....- -...|..+.++.|||.+|.+.|+|++|..+|++|+
T Consensus 239 ~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~--------G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al 310 (508)
T KOG1840|consen 239 VVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF--------GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERAL 310 (508)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 3455566799999999999999999999999965322 12257888999999999999999999999999999
Q ss_pred hcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCC---HHHHHHHHHHHHHHHHHHHHHH
Q psy793 342 LME--------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL-----PND---QQILKEIAFVRKQMRHHLNLEK 403 (414)
Q Consensus 342 ~~~--------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~-----P~~---~~~~~~l~~~~~~~~~~~~~~k 403 (414)
++- |.-...+..++..+..++++++|...|++++++. +++ ..+..+|+.++..+++..+.+.
T Consensus 311 ~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~ 388 (508)
T KOG1840|consen 311 EIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEE 388 (508)
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHH
Confidence 773 3335678889999999999999999999999864 233 5678899999999998888765
No 131
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.63 E-value=4.6e-07 Score=72.73 Aligned_cols=88 Identities=16% Similarity=0.248 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q psy793 315 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND---QQILKEI 388 (414)
Q Consensus 315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~---~~~~~~l 388 (414)
..++++|..+.+.+++++|+..|++++..+|++ ..+++.+|.++...+++++|+..|++++...|++ ..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 567899999999999999999999999999876 5799999999999999999999999999999886 5778888
Q ss_pred HHHHHHHHHHHHHH
Q psy793 389 AFVRKQMRHHLNLE 402 (414)
Q Consensus 389 ~~~~~~~~~~~~~~ 402 (414)
+.++..+++..+..
T Consensus 83 ~~~~~~~~~~~~A~ 96 (119)
T TIGR02795 83 GMSLQELGDKEKAK 96 (119)
T ss_pred HHHHHHhCChHHHH
Confidence 88888776665544
No 132
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.61 E-value=8.7e-08 Score=69.09 Aligned_cols=67 Identities=22% Similarity=0.215 Sum_probs=60.6
Q ss_pred HhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy793 274 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFR 353 (414)
Q Consensus 274 ~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~ 353 (414)
+++.|+|++|+..|++++.. .|....+++.+|.||+++|++++|...+++++..+|+++..+.-
T Consensus 1 ll~~~~~~~A~~~~~~~l~~----------------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR----------------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH----------------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 46789999999999999999 88899999999999999999999999999999999998877766
Q ss_pred HHH
Q psy793 354 RGR 356 (414)
Q Consensus 354 ~g~ 356 (414)
++.
T Consensus 65 ~a~ 67 (68)
T PF14559_consen 65 LAQ 67 (68)
T ss_dssp HHH
T ss_pred Hhc
Confidence 664
No 133
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.59 E-value=5.9e-07 Score=75.42 Aligned_cols=94 Identities=15% Similarity=0.189 Sum_probs=44.7
Q ss_pred HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC
Q psy793 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN 346 (414)
Q Consensus 267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~ 346 (414)
....|..++..|+|++|+..|++++...+ . ......+.+++|.+++.+++|++|+..++. +.-.+.
T Consensus 51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~~--d-----------~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~ 116 (145)
T PF09976_consen 51 ALQLAKAAYEQGDYDEAKAALEKALANAP--D-----------PELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAF 116 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCC--C-----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcch
Confidence 34455555555555555555555554310 0 122333445555555555555555555533 222223
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy793 347 NVKALFRRGRAQVSMNNFEQGLQDYEQA 374 (414)
Q Consensus 347 ~~~a~~~~g~~~~~lg~~~~A~~~~~~a 374 (414)
.+.++..+|.++..+|++++|+..|++|
T Consensus 117 ~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 117 KALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 3344445555555555555555555554
No 134
>KOG1840|consensus
Probab=98.58 E-value=9.3e-07 Score=87.99 Aligned_cols=134 Identities=18% Similarity=0.224 Sum_probs=108.3
Q ss_pred HHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy793 261 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 340 (414)
Q Consensus 261 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 340 (414)
...+..+.++|..|.+.|+|.+|..++++|+++..... ....+.....+.+++..+..++++++|+.+++++
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~--------~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL--------GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh--------ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 35678899999999999999999999999999965411 1225666778999999999999999999999999
Q ss_pred HhcC-----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHHHHHHHHH
Q psy793 341 LLME-----P---NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL--------PNDQQILKEIAFVRKQMRHHLNLE 402 (414)
Q Consensus 341 l~~~-----p---~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~--------P~~~~~~~~l~~~~~~~~~~~~~~ 402 (414)
+++- + .-++.+.++|.+|+.+|+|++|...|++|+.+. +........++..+.+.+.+.+.+
T Consensus 352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~ 429 (508)
T KOG1840|consen 352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAE 429 (508)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHH
Confidence 9762 2 336788899999999999999999999999875 223456667777777666666544
No 135
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.57 E-value=2.6e-07 Score=67.58 Aligned_cols=70 Identities=16% Similarity=0.209 Sum_probs=64.5
Q ss_pred hhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHH
Q psy793 271 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA 350 (414)
Q Consensus 271 G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a 350 (414)
.+.|+..++|+.|+..+++++.+ .|....++..+|.|+.++|+|.+|+.+++++++..|++..+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~----------------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL----------------DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh----------------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 46789999999999999999999 89999999999999999999999999999999999999887
Q ss_pred HHHHHH
Q psy793 351 LFRRGR 356 (414)
Q Consensus 351 ~~~~g~ 356 (414)
..-++.
T Consensus 66 ~~~~a~ 71 (73)
T PF13371_consen 66 RALRAM 71 (73)
T ss_pred HHHHHh
Confidence 665543
No 136
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.54 E-value=1.3e-06 Score=70.21 Aligned_cols=99 Identities=19% Similarity=0.171 Sum_probs=86.7
Q ss_pred HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793 265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 344 (414)
Q Consensus 265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 344 (414)
..+++.|..+-..|+.++|+..|++|+..- .. .+....++.++|.++..+|++++|+..+++++...
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g--L~-----------~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~ 68 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAG--LS-----------GADRRRALIQLASTLRNLGRYDEALALLEEALEEF 68 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC-----------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 357888999999999999999999999851 01 35566799999999999999999999999999998
Q ss_pred CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy793 345 PN---NVKALFRRGRAQVSMNNFEQGLQDYEQALD 376 (414)
Q Consensus 345 p~---~~~a~~~~g~~~~~lg~~~~A~~~~~~al~ 376 (414)
|+ +......++.++..+|++++|+..+-.++.
T Consensus 69 p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 69 PDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred CCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88 778888899999999999999999988775
No 137
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.53 E-value=2.1e-06 Score=78.57 Aligned_cols=92 Identities=16% Similarity=0.196 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHH
Q psy793 312 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND-QQILKEIAF 390 (414)
Q Consensus 312 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~-~~~~~~l~~ 390 (414)
.....|..+|..++...+.+.|+..+.+|++-+|.++.|-.-+|.+....|+|+.|++.|+.+++-||+. +++...|..
T Consensus 178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~ 257 (389)
T COG2956 178 EIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYE 257 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 4467899999999999999999999999999999999999999999999999999999999999999987 678889999
Q ss_pred HHHHHHHHHHHHH
Q psy793 391 VRKQMRHHLNLEK 403 (414)
Q Consensus 391 ~~~~~~~~~~~~k 403 (414)
|+..+++..+-..
T Consensus 258 ~Y~~lg~~~~~~~ 270 (389)
T COG2956 258 CYAQLGKPAEGLN 270 (389)
T ss_pred HHHHhCCHHHHHH
Confidence 9998888776543
No 138
>KOG1310|consensus
Probab=98.52 E-value=4e-07 Score=87.92 Aligned_cols=125 Identities=21% Similarity=0.222 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHh---hCHHHH
Q psy793 257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF---KAYKRA 333 (414)
Q Consensus 257 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l---~~~~~A 333 (414)
.-++.+.++..+..||..|..+.+..|+..|.+++.. .+....+|.|+|.++++- ++--.|
T Consensus 367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~----------------~~~~~~~l~nraa~lmkRkW~~d~~~A 430 (758)
T KOG1310|consen 367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQY----------------VPDAIYLLENRAAALMKRKWRGDSYLA 430 (758)
T ss_pred hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhh----------------ccchhHHHHhHHHHHHhhhccccHHHH
Confidence 3456677888999999999999999999999999998 788889999999999884 466789
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q psy793 334 INLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH 397 (414)
Q Consensus 334 ~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~ 397 (414)
+.+|..||+++|...||||+++.|+..++++.+|+.+...+....|.|........-+.+.+.+
T Consensus 431 lrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l~rDi~a 494 (758)
T KOG1310|consen 431 LRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVLCLPRDISA 494 (758)
T ss_pred HHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhccccchHH
Confidence 9999999999999999999999999999999999999998888889776665555444444433
No 139
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.50 E-value=1.1e-06 Score=79.28 Aligned_cols=114 Identities=12% Similarity=0.187 Sum_probs=99.7
Q ss_pred HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793 265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 344 (414)
Q Consensus 265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 344 (414)
..+++.+..+++.|+|..|...|..-|.-.+. .+....+++=||.|++.+|+|+.|...+..+++-.
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~-------------s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~ 208 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPN-------------STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY 208 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------------CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC
Confidence 33899999999999999999999988877443 34556789999999999999999999999999988
Q ss_pred CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793 345 PNNV---KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV 391 (414)
Q Consensus 345 p~~~---~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 391 (414)
|+++ .+++.+|.|...+|+-++|...|+++++-.|+...+......+
T Consensus 209 P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~ 258 (262)
T COG1729 209 PKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL 258 (262)
T ss_pred CCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 7764 5799999999999999999999999999999998877655443
No 140
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.49 E-value=1.8e-06 Score=83.34 Aligned_cols=65 Identities=20% Similarity=0.155 Sum_probs=60.4
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHH---HHHHHHHHHHHhhCHHHHHHHHHHH
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTA---ALLNMAAVQLKFKAYKRAINLCDDI 340 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~---~~~nla~~~~~l~~~~~A~~~~~~a 340 (414)
+..+.++|..|++.|+|++|+..|++||++ +|.... +|+|+|.||.++|++++|+.++++|
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL----------------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALEL----------------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777999999999999999999999999999 677664 5999999999999999999999999
Q ss_pred HhcC
Q psy793 341 LLME 344 (414)
Q Consensus 341 l~~~ 344 (414)
+++.
T Consensus 139 Lels 142 (453)
T PLN03098 139 LRDY 142 (453)
T ss_pred HHhc
Confidence 9983
No 141
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.49 E-value=1.6e-06 Score=83.58 Aligned_cols=109 Identities=18% Similarity=0.180 Sum_probs=93.8
Q ss_pred HhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCH
Q psy793 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNV 348 (414)
Q Consensus 269 ~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~ 348 (414)
..+..+++.++.++|++.+++++.+ +|....+..|+|.+|+++|++.+|+..++..+.-+|+++
T Consensus 345 ~~~~i~~~~nk~~~A~e~~~kal~l----------------~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp 408 (484)
T COG4783 345 LAGDILLEANKAKEAIERLKKALAL----------------DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP 408 (484)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhc----------------CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Confidence 4788999999999999999999999 888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy793 349 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK 393 (414)
Q Consensus 349 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 393 (414)
..|..+|++|..+|+-.+|...+-..+.+.-.-..+...+..+..
T Consensus 409 ~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 409 NGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred hHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999999999888777777777777766655555555544443
No 142
>KOG2003|consensus
Probab=98.48 E-value=2.7e-07 Score=87.54 Aligned_cols=97 Identities=22% Similarity=0.279 Sum_probs=90.3
Q ss_pred HhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCH
Q psy793 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNV 348 (414)
Q Consensus 269 ~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~ 348 (414)
+.||.+|++..|.+|++.|+.||..+++.. ....+.++.|++..+.++|.|+.|+..++.+++..| |-
T Consensus 242 nigni~~kkr~fskaikfyrmaldqvpsin-----------k~~rikil~nigvtfiq~gqy~dainsfdh~m~~~p-n~ 309 (840)
T KOG2003|consen 242 NIGNIHFKKREFSKAIKFYRMALDQVPSIN-----------KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAP-NF 309 (840)
T ss_pred eecceeeehhhHHHHHHHHHHHHhhccccc-----------hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCc-cH
Confidence 589999999999999999999999987776 788899999999999999999999999999999999 55
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793 349 KALFRRGRAQVSMNNFEQGLQDYEQALDL 377 (414)
Q Consensus 349 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l 377 (414)
.+-+++-.|++..|+-++-.+.|++.+.+
T Consensus 310 ~a~~nl~i~~f~i~d~ekmkeaf~kli~i 338 (840)
T KOG2003|consen 310 IAALNLIICAFAIGDAEKMKEAFQKLIDI 338 (840)
T ss_pred HhhhhhhhhheecCcHHHHHHHHHHHhcC
Confidence 66789999999999999999999999975
No 143
>KOG1129|consensus
Probab=98.48 E-value=3.3e-07 Score=83.76 Aligned_cols=135 Identities=12% Similarity=0.135 Sum_probs=100.1
Q ss_pred HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC-----------CcHHHHH-------hhHHHHHHHHHHHHHHHHHhh
Q psy793 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-----------QSKTQQK-------HFRSYYTAALLNMAAVQLKFK 328 (414)
Q Consensus 267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~-----------~~~~~~~-------~~~~~~~~~~~nla~~~~~l~ 328 (414)
+...+..+-..+++++|+++|+.+++.-+.+.++ ..++... ++......++.|+|.|.+-.+
T Consensus 293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaq 372 (478)
T KOG1129|consen 293 LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQ 372 (478)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhc
Confidence 3445555555566666666666666553322221 0111111 114455789999999999999
Q ss_pred CHHHHHHHHHHHHhcC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793 329 AYKRAINLCDDILLME--PN-NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL 401 (414)
Q Consensus 329 ~~~~A~~~~~~al~~~--p~-~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~ 401 (414)
+++-++..+++|+... |+ -+..||++|.+....||+--|..+|+-|+.-+|++.++..+|+.+..+.++-.+.
T Consensus 373 Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~A 448 (478)
T KOG1129|consen 373 QIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGA 448 (478)
T ss_pred chhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHH
Confidence 9999999999999774 32 3578999999999999999999999999999999999999999998877766554
No 144
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.47 E-value=2e-06 Score=90.59 Aligned_cols=114 Identities=14% Similarity=0.130 Sum_probs=99.4
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
...+....+.+...+++++|+.....+++. .|....+|+-+|..+++.+++.+|... .++.+
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~----------------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~ 92 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKE----------------HKKSISALYISGILSLSRRPLNDSNLL--NLIDS 92 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----------------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh
Confidence 455777888888999999999999999998 788889999999999988887777665 55555
Q ss_pred CCCCH-------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy793 344 EPNNV-------------------KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 395 (414)
Q Consensus 344 ~p~~~-------------------~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 395 (414)
-+.+. .|++.+|.||-.+|++++|...|+++++++|+|+.+.++++-.+...
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE 163 (906)
T ss_pred cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence 44444 89999999999999999999999999999999999999999998887
No 145
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.46 E-value=6.8e-07 Score=83.76 Aligned_cols=122 Identities=13% Similarity=0.185 Sum_probs=96.0
Q ss_pred HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC
Q psy793 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN 346 (414)
Q Consensus 267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~ 346 (414)
+......+...++++++...+.++..... .+....+|..+|.++.+.|++++|+.+++++|+++|+
T Consensus 113 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~--------------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~ 178 (280)
T PF13429_consen 113 LLSALQLYYRLGDYDEAEELLEKLEELPA--------------APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD 178 (280)
T ss_dssp -----H-HHHTT-HHHHHHHHHHHHH-T-----------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHhccC--------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 44455677888999999999988775411 2456778999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793 347 NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE 402 (414)
Q Consensus 347 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 402 (414)
+..+...++.++...|+++++...++...+..|.++..+..++.++..+++..+.-
T Consensus 179 ~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al 234 (280)
T PF13429_consen 179 DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEAL 234 (280)
T ss_dssp -HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHH
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccc
Confidence 99999999999999999999999999999988999999999999999888776653
No 146
>KOG3060|consensus
Probab=98.41 E-value=8.4e-06 Score=72.35 Aligned_cols=136 Identities=17% Similarity=0.108 Sum_probs=101.9
Q ss_pred HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC------------CcHH------HHHhhHHHHHHHHHHHHHHHHHhh
Q psy793 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS------------QSKT------QQKHFRSYYTAALLNMAAVQLKFK 328 (414)
Q Consensus 267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~------------~~~~------~~~~~~~~~~~~~~nla~~~~~l~ 328 (414)
.+-.|..+-..|.|++|++.|+..|+--+..... ...+ .-.+.-+.+..+|..+|..|+.++
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~ 168 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEG 168 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh
Confidence 4556778888899999999998877531110000 0011 111112455689999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN---NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE 402 (414)
Q Consensus 329 ~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg---~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 402 (414)
+|.+|.-++++.+-++|.++-.+.++|.+++-+| +++-|.++|.++++++|.+..++..+-.+-..+.+....+
T Consensus 169 ~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~sk~~ 245 (289)
T KOG3060|consen 169 DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQISKAE 245 (289)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999988776 5677999999999999988888888877777766554443
No 147
>KOG1156|consensus
Probab=98.40 E-value=2.1e-06 Score=85.05 Aligned_cols=121 Identities=14% Similarity=0.143 Sum_probs=107.9
Q ss_pred HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793 265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 344 (414)
Q Consensus 265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 344 (414)
..++.+....|..++|...++..+..|.- .|.....+.-.|..+..+|+-++|..++..++..|
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k----------------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d 71 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKK----------------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND 71 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHh----------------CCccchhHHhccchhhcccchHHHHHHHHHHhccC
Confidence 34777788888899999999998888886 56666777788889999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793 345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL 401 (414)
Q Consensus 345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~ 401 (414)
+.+.-+|.-+|..+..-.+|++|+++|+.|+.++|+|..+++.++.++.++++..-.
T Consensus 72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhH
Confidence 999999999999999999999999999999999999999999999999999887653
No 148
>KOG1128|consensus
Probab=98.39 E-value=1.8e-06 Score=86.60 Aligned_cols=118 Identities=14% Similarity=0.207 Sum_probs=96.7
Q ss_pred hhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHH
Q psy793 271 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA 350 (414)
Q Consensus 271 G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a 350 (414)
...|.-.||+-.--.+|++|+++. +.....+...+|......++|.+|.++++..++++|-....
T Consensus 457 ~~lyc~LGDv~~d~s~yEkawEls---------------n~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~ 521 (777)
T KOG1128|consen 457 PRLYCLLGDVLHDPSLYEKAWELS---------------NYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGT 521 (777)
T ss_pred chhHHHhhhhccChHHHHHHHHHh---------------hhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhH
Confidence 345555566666666666666662 22334455556666666899999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793 351 LFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 403 (414)
Q Consensus 351 ~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 403 (414)
||++|.|..++++++.|..+|.+++.++|++.++++++..++..+++..+.-+
T Consensus 522 wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~ 574 (777)
T KOG1128|consen 522 WFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFR 574 (777)
T ss_pred HHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999999998888777644
No 149
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.38 E-value=8.3e-07 Score=66.97 Aligned_cols=77 Identities=18% Similarity=0.284 Sum_probs=68.1
Q ss_pred hhCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy793 327 FKAYKRAINLCDDILLMEPN--NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM 404 (414)
Q Consensus 327 l~~~~~A~~~~~~al~~~p~--~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~ 404 (414)
.++|+.|+..++++++.+|. +...++.+|.|++.+|+|++|+..+++ ++.+|.+......++.+..++++..+..+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 58899999999999999995 466788899999999999999999999 899999999999999999999998887653
No 150
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=98.38 E-value=2.4e-05 Score=61.14 Aligned_cols=107 Identities=12% Similarity=0.221 Sum_probs=83.3
Q ss_pred HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh----
Q psy793 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL---- 342 (414)
Q Consensus 267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~---- 342 (414)
....|...+..|.|++|...|.+|++... ..+.++.-..+.-+.-|+..|+.++..+|+|++|+...+++|.
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~sr----tiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSR----TIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHT----TS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhc----cCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 44577888889999999999999999843 2334444555667788999999999999999999999999984
Q ss_pred ---cCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793 343 ---MEPNN----VKALFRRGRAQVSMNNFEQGLQDYEQALDL 377 (414)
Q Consensus 343 ---~~p~~----~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 377 (414)
++.+. +.+-+++|.++..+|+.++|+..|+++-++
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 45554 456789999999999999999999998765
No 151
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.38 E-value=3.9e-06 Score=89.04 Aligned_cols=121 Identities=12% Similarity=0.113 Sum_probs=101.9
Q ss_pred HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793 265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 344 (414)
Q Consensus 265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 344 (414)
..+...|..+...|+|++|+..|+++++. +|....++..++.+|..++++++|+..+++++..+
T Consensus 103 ~~llalA~ly~~~gdyd~Aiely~kaL~~----------------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d 166 (822)
T PRK14574 103 RGLASAARAYRNEKRWDQALALWQSSLKK----------------DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD 166 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC
Confidence 44566788999999999999999999999 78888888899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793 345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE 402 (414)
Q Consensus 345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 402 (414)
|.+... ..++.++..++++.+|+..|+++++++|++.++...+..+....+-.....
T Consensus 167 p~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~ 223 (822)
T PRK14574 167 PTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPAL 223 (822)
T ss_pred cchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 985544 445555656788877999999999999999999888888776665554433
No 152
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.37 E-value=1.5e-05 Score=78.97 Aligned_cols=127 Identities=12% Similarity=0.073 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Q psy793 260 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD 339 (414)
Q Consensus 260 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 339 (414)
..+.+......|-..+..|+|+.|.+...++.+. .|.....+.-.|.++.++|+++.|..++.+
T Consensus 80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~----------------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~ 143 (409)
T TIGR00540 80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADH----------------AAEPVLNLIKAAEAAQQRGDEARANQHLEE 143 (409)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhc----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4556777888999999999999999999998887 444445566677788888888888888888
Q ss_pred HHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793 340 ILLMEPNNV-KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE 402 (414)
Q Consensus 340 al~~~p~~~-~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 402 (414)
+.+..|++. .+...++..+...|+++.|...+++.++.+|+++.+...+..++...++..+..
T Consensus 144 a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~ 207 (409)
T TIGR00540 144 AAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALD 207 (409)
T ss_pred HHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 888777765 344456888888888888888888888888888888888888877777766443
No 153
>PRK11906 transcriptional regulator; Provisional
Probab=98.35 E-value=7.6e-06 Score=79.27 Aligned_cols=119 Identities=13% Similarity=0.007 Sum_probs=97.4
Q ss_pred HHHhhhHHhhhc---CHHHHHHHHHHHH---HHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHh---------hCHH
Q psy793 267 IKNSGNEYFKLN---RMHDAQRKYKKAV---RYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF---------KAYK 331 (414)
Q Consensus 267 ~~~~G~~~~~~~---~~~~A~~~y~~Al---~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l---------~~~~ 331 (414)
+..+|...+.++ ..+.|+.++.+|+ .+ +|.+..+|.-+|.||+.. .+-.
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~l----------------dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~ 321 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDI----------------QTLKTECYCLLAECHMSLALHGKSELELAAQ 321 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccC----------------CcccHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 344555544333 4578888899999 66 889999999999999876 2356
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793 332 RAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL 401 (414)
Q Consensus 332 ~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~ 401 (414)
+|....++|++++|.++.|++.+|.++...++++.|...|++|+.++|+...++...+.+..-.++.++.
T Consensus 322 ~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a 391 (458)
T PRK11906 322 KALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEA 391 (458)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHH
Confidence 7889999999999999999999999999999999999999999999999999999888876555554443
No 154
>KOG4162|consensus
Probab=98.35 E-value=6.5e-06 Score=83.13 Aligned_cols=101 Identities=17% Similarity=0.199 Sum_probs=94.8
Q ss_pred HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHH--HHHHHHhcC
Q psy793 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAIN--LCDDILLME 344 (414)
Q Consensus 267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~--~~~~al~~~ 344 (414)
++..|..+..+|++.+|...|..|+.+ +|..+.+...+|.|+++.|+-.-|.. ....+++++
T Consensus 687 ~~~~G~~~~~~~~~~EA~~af~~Al~l----------------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 687 YYLRGLLLEVKGQLEEAKEAFLVALAL----------------DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred HHHhhHHHHHHHhhHHHHHHHHHHHhc----------------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 356788888999999999999999999 89999999999999999999888888 999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy793 345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ 383 (414)
Q Consensus 345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~ 383 (414)
|.|.++||.+|.++..+|+.+.|..+|+.|+++++.++-
T Consensus 751 p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 751 PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999999999999999999988763
No 155
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.35 E-value=1.9e-05 Score=66.17 Aligned_cols=130 Identities=11% Similarity=0.075 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Q psy793 260 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD 339 (414)
Q Consensus 260 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 339 (414)
..+.+...+......+..+++..+...+.+.+.-.+. .+.-..+.+.+|.+++..|++++|+..++.
T Consensus 7 ~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~ 73 (145)
T PF09976_consen 7 QAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPS-------------SPYAALAALQLAKAAYEQGDYDEAKAALEK 73 (145)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455777777788888889998887777777765221 335567889999999999999999999999
Q ss_pred HHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793 340 ILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 403 (414)
Q Consensus 340 al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 403 (414)
++...|+. ..+.+++|.+++.+|+|++|+..++. ..-.+-.+.+...++.++...++..+..+
T Consensus 74 ~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~ 139 (145)
T PF09976_consen 74 ALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARA 139 (145)
T ss_pred HHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHH
Confidence 99987655 45899999999999999999999976 33344456788888888888877766544
No 156
>KOG2002|consensus
Probab=98.34 E-value=6.2e-06 Score=85.18 Aligned_cols=132 Identities=16% Similarity=0.165 Sum_probs=111.5
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
...+.+.|..+|..|++..|...+.+|+..+..... .++. ....++..+|+|.|+-.++++..|.+.|..+++.
T Consensus 452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n---~de~---~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 452 PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVAN---KDEG---KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcC---cccc---ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 355888999999999999999999999988432110 0000 2234778999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793 344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL 401 (414)
Q Consensus 344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~ 401 (414)
.|..+.+|.|+|......++..+|...++.++..+..|+.++..++.++....+....
T Consensus 526 hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 526 HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence 9999999999997777889999999999999999999999999999887766655443
No 157
>PRK15331 chaperone protein SicA; Provisional
Probab=98.32 E-value=1.1e-05 Score=67.75 Aligned_cols=99 Identities=13% Similarity=0.033 Sum_probs=89.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy793 305 QQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 384 (414)
Q Consensus 305 ~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~ 384 (414)
+...+.+......+..|.-++..|++++|...++-+..++|.+.+-++.+|.|+..+++|++|+..|-.|..++++|+..
T Consensus 28 ~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p 107 (165)
T PRK15331 28 DVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP 107 (165)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc
Confidence 33344566777888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy793 385 LKEIAFVRKQMRHHLNLEK 403 (414)
Q Consensus 385 ~~~l~~~~~~~~~~~~~~k 403 (414)
....+.|+..+++..+..+
T Consensus 108 ~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred cchHHHHHHHhCCHHHHHH
Confidence 9999999998888777654
No 158
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.30 E-value=1.5e-05 Score=80.53 Aligned_cols=119 Identities=11% Similarity=0.075 Sum_probs=88.6
Q ss_pred HHHHHHhhhHHhhhcC---HHHHHHHHHHHHHHHHhhccC----------------CcHHHH---H-------h--hHHH
Q psy793 264 IRTIKNSGNEYFKLNR---MHDAQRKYKKAVRYIKWYNQS----------------QSKTQQ---K-------H--FRSY 312 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~---~~~A~~~y~~Al~~~~~~~~~----------------~~~~~~---~-------~--~~~~ 312 (414)
|-.+..+|..++.+.+ +..|+.+|++|+++-+.+... ....+. . . .++.
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~ 418 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV 418 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence 4556778888876544 889999999999874422111 000100 0 0 1223
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy793 313 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ 383 (414)
Q Consensus 313 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~ 383 (414)
...+|.-+|..+...+++++|...+++|+.++| +..+|..+|.++...|++++|+..|++|+.++|.++.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 346677788888888999999999999999998 5789999999999999999999999999999998875
No 159
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.29 E-value=3.6e-05 Score=75.88 Aligned_cols=127 Identities=10% Similarity=0.057 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHH-HHHHHHhhCHHHHHHHH
Q psy793 259 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNM-AAVQLKFKAYKRAINLC 337 (414)
Q Consensus 259 ~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nl-a~~~~~l~~~~~A~~~~ 337 (414)
...+.+......|-..+..|+|++|.+...++-+. .+ ...+++.+ +.+..+.|+++.|..++
T Consensus 79 rr~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~----------------~~-~p~l~~llaA~aA~~~g~~~~A~~~l 141 (398)
T PRK10747 79 RKRRRARKQTEQALLKLAEGDYQQVEKLMTRNADH----------------AE-QPVVNYLLAAEAAQQRGDEARANQHL 141 (398)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----------------cc-chHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 35566778888999999999999999766665543 11 12333334 55558899999999999
Q ss_pred HHHHhcCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793 338 DDILLMEPNNVKAL-FRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE 402 (414)
Q Consensus 338 ~~al~~~p~~~~a~-~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 402 (414)
.++.+.+|++..+. ...+..+...|+++.|+..++++.+.+|+++.+...+..++.+.++..+..
T Consensus 142 ~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 142 ERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 99998888875443 455888888999999999999999999999988888888887777666543
No 160
>KOG3060|consensus
Probab=98.28 E-value=3.4e-05 Score=68.58 Aligned_cols=85 Identities=13% Similarity=0.160 Sum_probs=74.2
Q ss_pred HHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhh---CHHHHHHHHHHHHhcC
Q psy793 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK---AYKRAINLCDDILLME 344 (414)
Q Consensus 268 ~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~---~~~~A~~~~~~al~~~ 344 (414)
.+.++.|+..++|++|.-||++.+-+ .|....++..+|.+++-+| ++.-|.++|.++++++
T Consensus 158 ~eLaeiY~~~~~f~kA~fClEE~ll~----------------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 158 HELAEIYLSEGDFEKAAFCLEELLLI----------------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHc----------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 34799999999999999999999988 8888888999999888766 5888999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHH
Q psy793 345 PNNVKALFRRGRAQVSMNNFEQGL 368 (414)
Q Consensus 345 p~~~~a~~~~g~~~~~lg~~~~A~ 368 (414)
|.+..++|.+..|..++-+...+.
T Consensus 222 ~~~~ral~GI~lc~~~la~~sk~~ 245 (289)
T KOG3060|consen 222 PKNLRALFGIYLCGSALAQISKAE 245 (289)
T ss_pred hHhHHHHHHHHHHHHHHHHHhHHH
Confidence 999999999999888776555544
No 161
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.27 E-value=1.4e-05 Score=64.23 Aligned_cols=90 Identities=17% Similarity=0.194 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHH
Q psy793 315 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN---DQQILKEI 388 (414)
Q Consensus 315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~---~~~~~~~l 388 (414)
.+++++|.++-.+|+.++|+..|++++...... ..++..+|.++..+|++++|+..+++++.-.|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 467899999999999999999999999986444 579999999999999999999999999999898 77777777
Q ss_pred HHHHHHHHHHHHHHHH
Q psy793 389 AFVRKQMRHHLNLEKM 404 (414)
Q Consensus 389 ~~~~~~~~~~~~~~k~ 404 (414)
+.+....++..+.-..
T Consensus 82 Al~L~~~gr~~eAl~~ 97 (120)
T PF12688_consen 82 ALALYNLGRPKEALEW 97 (120)
T ss_pred HHHHHHCCCHHHHHHH
Confidence 7777777777665443
No 162
>KOG2076|consensus
Probab=98.27 E-value=1.6e-05 Score=81.60 Aligned_cols=99 Identities=13% Similarity=0.164 Sum_probs=93.4
Q ss_pred HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793 265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 344 (414)
Q Consensus 265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 344 (414)
..++.+|..|-.+|+.++|+..+..|-.+ +|.....|..++....+++.+++|.-+|.+||+++
T Consensus 174 ~ay~tL~~IyEqrGd~eK~l~~~llAAHL----------------~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~ 237 (895)
T KOG2076|consen 174 IAYYTLGEIYEQRGDIEKALNFWLLAAHL----------------NPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN 237 (895)
T ss_pred hhHHHHHHHHHHcccHHHHHHHHHHHHhc----------------CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 44677899999999999999999988888 77778999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy793 345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP 379 (414)
Q Consensus 345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P 379 (414)
|.+.+.+++++..|..+|++..|+..|.+++++.|
T Consensus 238 p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 238 PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999
No 163
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.25 E-value=2.6e-05 Score=71.61 Aligned_cols=124 Identities=9% Similarity=0.148 Sum_probs=108.3
Q ss_pred HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793 263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 342 (414)
Q Consensus 263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 342 (414)
....+...|..|++.|-++.|...|...++. ......++.-+...|.+.++|++|++..++..+
T Consensus 106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de----------------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k 169 (389)
T COG2956 106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVDE----------------GEFAEGALQQLLNIYQATREWEKAIDVAERLVK 169 (389)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc----------------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4677889999999999999999999888875 455567888899999999999999999999999
Q ss_pred cCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793 343 MEPNN-----VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE 402 (414)
Q Consensus 343 ~~p~~-----~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 402 (414)
+.+.. +.-|+-+|..+....+.+.|+..+++|++.+|.+..+--.++.+....+++.+.-
T Consensus 170 ~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV 234 (389)
T COG2956 170 LGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAV 234 (389)
T ss_pred cCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHH
Confidence 98765 3467789999999999999999999999999999998888888888777776543
No 164
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.23 E-value=1.3e-05 Score=74.00 Aligned_cols=94 Identities=11% Similarity=0.136 Sum_probs=76.9
Q ss_pred HHHHHHHHHHH-HHhhCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHH
Q psy793 314 TAALLNMAAVQ-LKFKAYKRAINLCDDILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND---QQILK 386 (414)
Q Consensus 314 ~~~~~nla~~~-~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~---~~~~~ 386 (414)
...+++.|..+ ++.++|++|+..|+..++..|++ +.++|.+|.+|+.+|++++|+..|+++++..|++ ++++.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 35567777776 56799999999999999999988 5799999999999999999999999999998885 67778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy793 387 EIAFVRKQMRHHLNLEKMTYAR 408 (414)
Q Consensus 387 ~l~~~~~~~~~~~~~~k~~~~~ 408 (414)
.++.++..+++..+. ++.|..
T Consensus 222 klg~~~~~~g~~~~A-~~~~~~ 242 (263)
T PRK10803 222 KVGVIMQDKGDTAKA-KAVYQQ 242 (263)
T ss_pred HHHHHHHHcCCHHHH-HHHHHH
Confidence 888888766544443 334443
No 165
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.23 E-value=8.1e-06 Score=79.04 Aligned_cols=100 Identities=10% Similarity=0.026 Sum_probs=88.6
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
...+...|..+...|++++|+..+++++++ .|....++..+|.++...|++++|+..+++++..
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~----------------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~ 177 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALEL----------------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDT 177 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence 344567888999999999999999999999 6777888999999999999999999999999999
Q ss_pred CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy793 344 EPNNV----KALFRRGRAQVSMNNFEQGLQDYEQALDLLP 379 (414)
Q Consensus 344 ~p~~~----~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P 379 (414)
.|.++ ..|+.+|.++..+|++++|+..|++++...|
T Consensus 178 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 178 WDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred cCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 87433 3566899999999999999999999987776
No 166
>KOG0543|consensus
Probab=98.22 E-value=6e-06 Score=78.15 Aligned_cols=97 Identities=20% Similarity=0.224 Sum_probs=87.8
Q ss_pred HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC
Q psy793 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN 346 (414)
Q Consensus 267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~ 346 (414)
+.+.+-.+.|.+.|.+|+...+++|++ ++.++.+++.+|.|++.+++|+.|+.++++|++++|.
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~----------------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~ 323 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLEL----------------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS 323 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhc----------------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence 567889999999999999999999999 9999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhhCC
Q psy793 347 NVKALFRRGRAQVSMNNFEQG-LQDYEQALDLLP 379 (414)
Q Consensus 347 ~~~a~~~~g~~~~~lg~~~~A-~~~~~~al~l~P 379 (414)
|-.+...+..|.....++.+. .+.|.+.+..-+
T Consensus 324 Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 324 NKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 988888888888888777665 778888887654
No 167
>KOG1129|consensus
Probab=98.22 E-value=9.1e-07 Score=80.93 Aligned_cols=123 Identities=15% Similarity=0.170 Sum_probs=87.0
Q ss_pred HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 341 (414)
Q Consensus 262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 341 (414)
+..+.+.....+|-+-.+...|+..|.+.++. -|..+..+..+|.++..|+++++|+++|+.++
T Consensus 254 ~~~dTfllLskvY~ridQP~~AL~~~~~gld~----------------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vl 317 (478)
T KOG1129|consen 254 PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS----------------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVL 317 (478)
T ss_pred CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc----------------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHH
Confidence 34566778888999999999999999999988 67778888888888888888888888888888
Q ss_pred hcCCCCHH----------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHH
Q psy793 342 LMEPNNVK----------------------------------ALFRRGRAQVSMNNFEQGLQDYEQALDLLPN---DQQI 384 (414)
Q Consensus 342 ~~~p~~~~----------------------------------a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~---~~~~ 384 (414)
+++|.|.+ .+.++|.|++.-++++-++..|++|+...-+ -.++
T Consensus 318 k~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDv 397 (478)
T KOG1129|consen 318 KLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADV 397 (478)
T ss_pred hcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhh
Confidence 88776644 4455566666556666666666666554321 1345
Q ss_pred HHHHHHHHHHHHHHHH
Q psy793 385 LKEIAFVRKQMRHHLN 400 (414)
Q Consensus 385 ~~~l~~~~~~~~~~~~ 400 (414)
|.+++.+...+++...
T Consensus 398 WYNlg~vaV~iGD~nl 413 (478)
T KOG1129|consen 398 WYNLGFVAVTIGDFNL 413 (478)
T ss_pred hhccceeEEeccchHH
Confidence 5555555555554443
No 168
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.7e-05 Score=72.59 Aligned_cols=100 Identities=13% Similarity=0.069 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHH
Q psy793 310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN---NFEQGLQDYEQALDLLPNDQQILK 386 (414)
Q Consensus 310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg---~~~~A~~~~~~al~l~P~~~~~~~ 386 (414)
+|.+..-|.-||.+|+.++++..|...|.+|+++.|+|+..+..+|.+++.+. .-.+|...+++++.++|.|..++.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 89999999999999999999999999999999999999999999999988774 457899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q psy793 387 EIAFVRKQMRHHLNLEKMTYARMF 410 (414)
Q Consensus 387 ~l~~~~~~~~~~~~~~k~~~~~~f 410 (414)
.|+......+++.+.-- .+..|.
T Consensus 232 lLA~~afe~g~~~~A~~-~Wq~lL 254 (287)
T COG4235 232 LLAFAAFEQGDYAEAAA-AWQMLL 254 (287)
T ss_pred HHHHHHHHcccHHHHHH-HHHHHH
Confidence 99999888777766432 444443
No 169
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.22 E-value=1.4e-05 Score=77.36 Aligned_cols=138 Identities=11% Similarity=-0.024 Sum_probs=107.6
Q ss_pred HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC--------------CcHH---H----HHhhHHHHHHHHHHHHHHH
Q psy793 266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS--------------QSKT---Q----QKHFRSYYTAALLNMAAVQ 324 (414)
Q Consensus 266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~--------------~~~~---~----~~~~~~~~~~~~~nla~~~ 324 (414)
.....|..++..|++++|+..++++++..+..... .... + .....+....++..+|.++
T Consensus 45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ 124 (355)
T cd05804 45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGL 124 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHH
Confidence 35567889999999999999999999864322200 0000 0 1122344456777899999
Q ss_pred HHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHHHHHHH
Q psy793 325 LKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ----ILKEIAFVRKQMRHHLN 400 (414)
Q Consensus 325 ~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~----~~~~l~~~~~~~~~~~~ 400 (414)
..+|++++|+..++++++++|+++.++..+|.+++.+|++++|+..+++++...|.+.. .+..++.++...++..+
T Consensus 125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999875433 34467888887777766
Q ss_pred HHH
Q psy793 401 LEK 403 (414)
Q Consensus 401 ~~k 403 (414)
..+
T Consensus 205 A~~ 207 (355)
T cd05804 205 ALA 207 (355)
T ss_pred HHH
Confidence 654
No 170
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.21 E-value=2.5e-06 Score=52.19 Aligned_cols=34 Identities=29% Similarity=0.648 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy793 348 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381 (414)
Q Consensus 348 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~ 381 (414)
+++|+++|.++..++++++|+.+|++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3567777777777777777777777777777753
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.20 E-value=3.1e-05 Score=72.62 Aligned_cols=111 Identities=14% Similarity=0.180 Sum_probs=88.4
Q ss_pred HHHHHHHHHhhhHHhhh-cCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Q psy793 261 EDVIRTIKNSGNEYFKL-NRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD 339 (414)
Q Consensus 261 ~~~a~~~~~~G~~~~~~-~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 339 (414)
...+..+.+.|..|... +++++|+.+|++|+++..... .......++.++|.++.++++|++|+..+++
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~----------~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG----------SPHSAAECLLKAADLYARLGRYEEAIEIYEE 180 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC----------ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34578888999999999 999999999999999965444 1344567899999999999999999999999
Q ss_pred HHhcCCC------CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy793 340 ILLMEPN------NVK-ALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381 (414)
Q Consensus 340 al~~~p~------~~~-a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~ 381 (414)
+....-+ +++ .+++.+.|++..||+..|...+++....+|.-
T Consensus 181 ~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 181 VAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 9865321 233 45678889999999999999999999999854
No 172
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.19 E-value=7.4e-05 Score=62.62 Aligned_cols=114 Identities=17% Similarity=0.191 Sum_probs=90.1
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCC------cHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQ------SKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLC 337 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~------~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~ 337 (414)
...+...|......++...++..+.+|+.+..-.-... -......+......+...++..+...+++++|+..|
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 85 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL 85 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 34455667777788899999999999998864221111 134556667888899999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793 338 DDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 377 (414)
Q Consensus 338 ~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 377 (414)
++++.++|.+..+|..+-.+|..+|+..+|+..|+++.+.
T Consensus 86 ~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 86 QRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988653
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.18 E-value=2e-05 Score=73.93 Aligned_cols=132 Identities=14% Similarity=0.112 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q psy793 259 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD 338 (414)
Q Consensus 259 ~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~ 338 (414)
+..+.+..+...|+.|-..++|++|..+|.+|..+..... .......+|.+.+.||.+. ++++|+.+++
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~----------~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~ 98 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLG----------DKFEAAKAYEEAANCYKKG-DPDEAIECYE 98 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-----------HHHHHHHHHHHHHHHHHT-THHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHHhh-CHHHHHHHHH
Confidence 4556678888899999999999999999999999854322 1344456788888888777 9999999999
Q ss_pred HHHhcC-----CC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHH
Q psy793 339 DILLME-----PN-NVKALFRRGRAQVSM-NNFEQGLQDYEQALDLLPND------QQILKEIAFVRKQMRHHLNL 401 (414)
Q Consensus 339 ~al~~~-----p~-~~~a~~~~g~~~~~l-g~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~~~~~~~~~~ 401 (414)
+|+.+- +. -++++.++|.+|... +++++|+..|++|+++.-.+ ......++.++.+++++.+.
T Consensus 99 ~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A 174 (282)
T PF14938_consen 99 KAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEA 174 (282)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHH
Confidence 999762 11 256888999999998 99999999999999874221 34556677777777766554
No 174
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.16 E-value=1.6e-05 Score=78.77 Aligned_cols=128 Identities=10% Similarity=-0.007 Sum_probs=100.2
Q ss_pred HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHH--HHHHHHHHHHhhCHHHHHHHHHHH
Q psy793 263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAA--LLNMAAVQLKFKAYKRAINLCDDI 340 (414)
Q Consensus 263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~--~~nla~~~~~l~~~~~A~~~~~~a 340 (414)
........+..+...|++++|+...+++++.. |..... ..-+....+..++...++..++++
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~----------------pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKL----------------GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC----------------CCcccchhHHHHHhhhcCCCChHHHHHHHHHH
Confidence 35567778999999999999999999999973 222211 122333344567889999999999
Q ss_pred HhcCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy793 341 LLMEPNNV--KALFRRGRAQVSMNNFEQGLQDYE--QALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYAR 408 (414)
Q Consensus 341 l~~~p~~~--~a~~~~g~~~~~lg~~~~A~~~~~--~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~ 408 (414)
++.+|+++ ..+..+|..++.+|+|++|.+.|+ ++++..|++..+. .++.++.++++..+. ++.|++
T Consensus 326 lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~~~A-~~~~~~ 395 (409)
T TIGR00540 326 AKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDKAEA-AAMRQD 395 (409)
T ss_pred HHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCHHHH-HHHHHH
Confidence 99999999 788899999999999999999999 6888889776644 889998888886655 334443
No 175
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.14 E-value=1.2e-05 Score=77.93 Aligned_cols=81 Identities=22% Similarity=0.258 Sum_probs=42.1
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q psy793 320 MAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL 399 (414)
Q Consensus 320 la~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~ 399 (414)
+|.+++.+++..+|++...++|...|.+...+.-.|..+...++++.|+...++|.++.|++-..|..|+.++..+++.+
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e 285 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFE 285 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHH
Confidence 44445455555555555555555555555555555555555555555555555555555555555555555555554444
Q ss_pred H
Q psy793 400 N 400 (414)
Q Consensus 400 ~ 400 (414)
+
T Consensus 286 ~ 286 (395)
T PF09295_consen 286 N 286 (395)
T ss_pred H
Confidence 4
No 176
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.13 E-value=6.7e-06 Score=53.64 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy793 349 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAF 390 (414)
Q Consensus 349 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~ 390 (414)
.+++.+|.+|..+|++++|++.|+++++.+|+|..++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456677777777777777777777777777777777766654
No 177
>KOG4648|consensus
Probab=98.12 E-value=6.5e-06 Score=75.89 Aligned_cols=84 Identities=18% Similarity=0.191 Sum_probs=74.2
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q psy793 318 LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH 397 (414)
Q Consensus 318 ~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~ 397 (414)
-..|.-|+++|+|++|+.+|.+++..+|.|+-.+.++|.+|+++..|..|..++..|+.|+-....+....+.++..++.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 45788999999999999999999999999999999999999999999999999999999997777777777776666666
Q ss_pred HHHH
Q psy793 398 HLNL 401 (414)
Q Consensus 398 ~~~~ 401 (414)
..+.
T Consensus 181 ~~EA 184 (536)
T KOG4648|consen 181 NMEA 184 (536)
T ss_pred HHHH
Confidence 5554
No 178
>KOG1174|consensus
Probab=98.12 E-value=1.4e-05 Score=75.43 Aligned_cols=126 Identities=18% Similarity=0.211 Sum_probs=104.7
Q ss_pred hhhHHhhhcCHHHHHHHHHHHHHHHHhhccCC-------------c-------HHHHHhhHHHHHHHHHHHHHHHHHhhC
Q psy793 270 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQ-------------S-------KTQQKHFRSYYTAALLNMAAVQLKFKA 329 (414)
Q Consensus 270 ~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~-------------~-------~~~~~~~~~~~~~~~~nla~~~~~l~~ 329 (414)
.-..|+..+.+.+|...-+.+++.++...... . .+....+.|.+..+-..+|..+..-|.
T Consensus 374 L~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~ 453 (564)
T KOG1174|consen 374 LFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGP 453 (564)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCc
Confidence 44567888999999999888888876544321 0 223334468888999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793 330 YKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR 396 (414)
Q Consensus 330 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 396 (414)
+..++..++++|...|+ ...|..+|..+...+.+++|+..|.+|+.++|++......+.++..+..
T Consensus 454 ~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 454 TKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred cchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence 99999999999999885 4578899999999999999999999999999999999999988766543
No 179
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.11 E-value=2.6e-06 Score=52.12 Aligned_cols=34 Identities=15% Similarity=0.310 Sum_probs=31.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy793 336 LCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 369 (414)
Q Consensus 336 ~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~ 369 (414)
+|++||+++|+++.+|+++|.+|..+|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999963
No 180
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.09 E-value=8.6e-06 Score=49.68 Aligned_cols=34 Identities=32% Similarity=0.633 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy793 348 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381 (414)
Q Consensus 348 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~ 381 (414)
+++++.+|.+++.+|++++|+..|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4577888888888888888888888888888875
No 181
>KOG1130|consensus
Probab=98.08 E-value=3.2e-05 Score=73.05 Aligned_cols=130 Identities=13% Similarity=0.156 Sum_probs=99.5
Q ss_pred HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 341 (414)
Q Consensus 262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 341 (414)
.+-+.+-+.||.|+-.|+|++||..-+.-|++..... .....-.++.|+|.||.-+++++.|+++|++++
T Consensus 193 aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG----------DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 193 AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG----------DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh----------hHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 3445566789999999999999999999888855443 134455789999999999999999999999987
Q ss_pred hcC----CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHHHHHHHH
Q psy793 342 LME----PN--NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN------DQQILKEIAFVRKQMRHHLNL 401 (414)
Q Consensus 342 ~~~----p~--~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~------~~~~~~~l~~~~~~~~~~~~~ 401 (414)
.+. .. .+..-|.+|.+|.-+.++++|+.++++-|.+.-. ...+-.-|+.....++...+.
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kA 334 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKA 334 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHH
Confidence 552 22 3556799999999999999999999998776432 234445566666666655443
No 182
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.07 E-value=0.00014 Score=65.26 Aligned_cols=122 Identities=15% Similarity=0.225 Sum_probs=96.4
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
+..+.+.|...++.|+|++|+..|++.....+. .|....+...++.++++.++|++|+...++-+.+
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~-------------s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPF-------------SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 567999999999999999999999888865222 3455678889999999999999999999999999
Q ss_pred CCCCH---HHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHH
Q psy793 344 EPNNV---KALFRRGRAQVSMNN--------FEQGLQDYEQALDLLPNDQ---QILKEIAFVRKQMRHH 398 (414)
Q Consensus 344 ~p~~~---~a~~~~g~~~~~lg~--------~~~A~~~~~~al~l~P~~~---~~~~~l~~~~~~~~~~ 398 (414)
.|.++ .++|-+|.+++..=+ -.+|+..|+..++..|+.+ .+...+..+...+...
T Consensus 101 yP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~ 169 (254)
T COG4105 101 YPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH 169 (254)
T ss_pred CCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH
Confidence 98765 578888999776522 3678999999999999985 4444444444444433
No 183
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.07 E-value=5.3e-05 Score=73.56 Aligned_cols=77 Identities=18% Similarity=0.261 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy793 310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 386 (414)
Q Consensus 310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~ 386 (414)
.|....++...|..+++.++++.|+..+++|..+.|++.++|+.+|.||..+|+|++|+..+..+--..+.+.....
T Consensus 230 ~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k~~~~ 306 (395)
T PF09295_consen 230 NPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKDKYKLK 306 (395)
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCccchhhh
Confidence 45567788889999999999999999999999999999999999999999999999999998877665555554443
No 184
>KOG1173|consensus
Probab=98.07 E-value=1.5e-05 Score=78.11 Aligned_cols=124 Identities=18% Similarity=0.182 Sum_probs=113.5
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
+-.++..|--|+--+++.+|.++|.||..+ ++....+|...|-.|.-.++.++|+.+|.+|-++
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~l----------------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl 375 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTL----------------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL 375 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhc----------------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh
Confidence 344677888899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793 344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 403 (414)
Q Consensus 344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 403 (414)
-|......+.+|.=|+.+++++-|.+.|..|+.+.|+|+-+...++-+.-..+...+..+
T Consensus 376 ~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~ 435 (611)
T KOG1173|consen 376 MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALK 435 (611)
T ss_pred ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHH
Confidence 999999999999999999999999999999999999999999999888776666666544
No 185
>KOG1174|consensus
Probab=98.06 E-value=4.2e-05 Score=72.35 Aligned_cols=120 Identities=14% Similarity=0.128 Sum_probs=86.2
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHH------
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLC------ 337 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~------ 337 (414)
...+..+|+.+...++.++|+..|+.|+.+ .|....+|..+-.||+..+++++|....
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~L----------------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~ 397 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQML----------------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL 397 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHhc----------------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999 7888888999989998888877776554
Q ss_pred ------------------------------HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy793 338 ------------------------------DDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387 (414)
Q Consensus 338 ------------------------------~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~ 387 (414)
+++|.++|...+|-..+|..+..-|.++++++.+++++...|+ ...+..
T Consensus 398 ~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~ 476 (564)
T KOG1174|consen 398 FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNH 476 (564)
T ss_pred hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHH
Confidence 4444555666666666666666666666666666666666553 334555
Q ss_pred HHHHHHHHHHHHH
Q psy793 388 IAFVRKQMRHHLN 400 (414)
Q Consensus 388 l~~~~~~~~~~~~ 400 (414)
|+.+.....+..+
T Consensus 477 Lgd~~~A~Ne~Q~ 489 (564)
T KOG1174|consen 477 LGDIMRAQNEPQK 489 (564)
T ss_pred HHHHHHHhhhHHH
Confidence 5555554444443
No 186
>KOG4234|consensus
Probab=98.04 E-value=4.3e-05 Score=65.57 Aligned_cols=81 Identities=19% Similarity=0.231 Sum_probs=71.2
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy793 320 MAAVQLKFKAYKRAINLCDDILLMEPNNV-----KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ 394 (414)
Q Consensus 320 la~~~~~l~~~~~A~~~~~~al~~~p~~~-----~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 394 (414)
-|.-+++.|+|.+|..-|..||.+.|... -.|.++|.|+..++.++.|+.++.+|++++|.+..++...+.++..
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 45667899999999999999999998753 4678999999999999999999999999999999999888888888
Q ss_pred HHHHHH
Q psy793 395 MRHHLN 400 (414)
Q Consensus 395 ~~~~~~ 400 (414)
+....+
T Consensus 181 ~ek~ee 186 (271)
T KOG4234|consen 181 MEKYEE 186 (271)
T ss_pred hhhHHH
Confidence 755444
No 187
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.02 E-value=2.2e-05 Score=73.55 Aligned_cols=113 Identities=19% Similarity=0.194 Sum_probs=75.4
Q ss_pred hhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhh--CHHHHHHHHHHHHhcCCCC
Q psy793 270 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK--AYKRAINLCDDILLMEPNN 347 (414)
Q Consensus 270 ~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~--~~~~A~~~~~~al~~~p~~ 347 (414)
.-..+++.++++.|.+.++..-+. +...+-...-.|++.+..| ++.+|...|++..+..+.+
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~----------------~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t 200 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQI----------------DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST 200 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCC----------------SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc----------------CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC
Confidence 445777888999998888776543 1222222233333444444 5888888888877777778
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q psy793 348 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 398 (414)
Q Consensus 348 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~ 398 (414)
+..+..+|.|++.+|+|++|...+++|++.+|+++.+..++..+...+++.
T Consensus 201 ~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 201 PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 888888888888888888888888888888888888888877776665555
No 188
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.02 E-value=8.9e-06 Score=49.71 Aligned_cols=34 Identities=21% Similarity=0.466 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC
Q psy793 314 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN 347 (414)
Q Consensus 314 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~ 347 (414)
+.+|+++|.+|..+++|++|+.+|++||+++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3579999999999999999999999999999974
No 189
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.01 E-value=4.8e-05 Score=76.62 Aligned_cols=92 Identities=16% Similarity=0.136 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793 312 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV 391 (414)
Q Consensus 312 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 391 (414)
....+++.+|.+|..+|++++|+.+.++||+..|..+..|+.+|.++.+.|++++|...++.|..+++.|.-+.....+.
T Consensus 192 ~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy 271 (517)
T PF12569_consen 192 TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHH
Q psy793 392 RKQMRHHLNLEK 403 (414)
Q Consensus 392 ~~~~~~~~~~~k 403 (414)
.-+.++.++.++
T Consensus 272 ~LRa~~~e~A~~ 283 (517)
T PF12569_consen 272 LLRAGRIEEAEK 283 (517)
T ss_pred HHHCCCHHHHHH
Confidence 877777666654
No 190
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.99 E-value=7e-05 Score=67.75 Aligned_cols=86 Identities=15% Similarity=0.183 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHH
Q psy793 317 LLNMAAVQLKFKAYKRAINLCDDILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND---QQILKEIAF 390 (414)
Q Consensus 317 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~---~~~~~~l~~ 390 (414)
.++.|.-+++.|+|..|...+..-++..|++ +.|+|++|.+++.+|+|++|...|..+.+-.|.. ++++..|+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5677777789999999999999999999886 5799999999999999999999999999998876 577888888
Q ss_pred HHHHHHHHHHHH
Q psy793 391 VRKQMRHHLNLE 402 (414)
Q Consensus 391 ~~~~~~~~~~~~ 402 (414)
++.++++..+..
T Consensus 224 ~~~~l~~~d~A~ 235 (262)
T COG1729 224 SLGRLGNTDEAC 235 (262)
T ss_pred HHHHhcCHHHHH
Confidence 888777665543
No 191
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.98 E-value=3.2e-05 Score=78.20 Aligned_cols=40 Identities=8% Similarity=-0.042 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHH
Q psy793 310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA 350 (414)
Q Consensus 310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a 350 (414)
.+ ...+|..+|.++...|++++|++.+.+|+.++|..+..
T Consensus 450 ~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 450 EM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 56 46789999999999999999999999999999998853
No 192
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.95 E-value=0.00055 Score=60.87 Aligned_cols=125 Identities=12% Similarity=0.144 Sum_probs=94.2
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhC-----------HHH
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA-----------YKR 332 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~-----------~~~ 332 (414)
.......|..+++.++|.+|+..|++-++..+. .+....+++.+|.|++++.. ..+
T Consensus 42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~-------------~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~ 108 (203)
T PF13525_consen 42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN-------------SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRK 108 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT--------------TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-------------CcchhhHHHHHHHHHHHhCccchhcccChHHHHH
Confidence 455778999999999999999999999988554 34456788888888777643 458
Q ss_pred HHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHH
Q psy793 333 AINLCDDILLMEPNNVK-----------------ALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ---QILKEIAFVR 392 (414)
Q Consensus 333 A~~~~~~al~~~p~~~~-----------------a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~---~~~~~l~~~~ 392 (414)
|+..++..+..-|++.. --+..|.-|+..|.|..|+.-++.+++-.|+.. +++..+...+
T Consensus 109 A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y 188 (203)
T PF13525_consen 109 AIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAY 188 (203)
T ss_dssp HHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence 99999999999998732 123458889999999999999999999999875 4556666666
Q ss_pred HHHHHHHHH
Q psy793 393 KQMRHHLNL 401 (414)
Q Consensus 393 ~~~~~~~~~ 401 (414)
..++.....
T Consensus 189 ~~l~~~~~a 197 (203)
T PF13525_consen 189 YKLGLKQAA 197 (203)
T ss_dssp HHTT-HHHH
T ss_pred HHhCChHHH
Confidence 666666543
No 193
>PRK11906 transcriptional regulator; Provisional
Probab=97.94 E-value=4.1e-05 Score=74.26 Aligned_cols=90 Identities=11% Similarity=0.044 Sum_probs=80.4
Q ss_pred cCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy793 278 NRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRA 357 (414)
Q Consensus 278 ~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~ 357 (414)
.+-.+|.+.-.+|+++ ++.+..++..+|.++...++++.|+..+++|+.++|+.+.+||.+|..
T Consensus 318 ~~~~~a~~~A~rAvel----------------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~ 381 (458)
T PRK11906 318 LAAQKALELLDYVSDI----------------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALV 381 (458)
T ss_pred HHHHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHH
Confidence 3445566666666666 889999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy793 358 QVSMNNFEQGLQDYEQALDLLPNDQQ 383 (414)
Q Consensus 358 ~~~lg~~~~A~~~~~~al~l~P~~~~ 383 (414)
+...|+.++|.+.+++|++++|.-..
T Consensus 382 ~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 382 HFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred HHHcCCHHHHHHHHHHHhccCchhhH
Confidence 99999999999999999999997644
No 194
>KOG1156|consensus
Probab=97.94 E-value=6e-05 Score=74.99 Aligned_cols=120 Identities=18% Similarity=0.184 Sum_probs=95.3
Q ss_pred HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793 265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 344 (414)
Q Consensus 265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 344 (414)
+.+--.|-.+...|+-++|..+-..+++. ++....||.-+|..+...++|++|+.+|+.||.++
T Consensus 42 eslAmkGL~L~~lg~~~ea~~~vr~glr~----------------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~ 105 (700)
T KOG1156|consen 42 ESLAMKGLTLNCLGKKEEAYELVRLGLRN----------------DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE 105 (700)
T ss_pred hhHHhccchhhcccchHHHHHHHHHHhcc----------------CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence 34555788888888888888888888876 66667788888888888888888888888888888
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q psy793 345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLN 400 (414)
Q Consensus 345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~ 400 (414)
|+|-..|.-++....++++|+.....-.+.+++.|....-|..++..+..++++..
T Consensus 106 ~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 106 KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888887777666666655555543
No 195
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.94 E-value=8.4e-05 Score=73.31 Aligned_cols=118 Identities=8% Similarity=0.072 Sum_probs=94.7
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
.......+..+...|+.++|.....+++.. ++ ++ .+..- ...+..+++++++..+++.++.
T Consensus 263 ~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~-------------~~---~l~~l--~~~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 263 VALQVAMAEHLIECDDHDTAQQIILDGLKR-QY-------------DE---RLVLL--IPRLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CC-------------CH---HHHHH--HhhccCCChHHHHHHHHHHHhh
Confidence 455677899999999999999999999874 11 12 11111 2223458999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793 344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL 401 (414)
Q Consensus 344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~ 401 (414)
+|+++..++.+|..+...++|++|.+.|+++++..|++.. ...++.++...++..+.
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEA 380 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999999999999998765 34688888877776655
No 196
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.93 E-value=1.9e-05 Score=51.46 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy793 315 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRA 357 (414)
Q Consensus 315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~ 357 (414)
.++..+|.+|..+|++++|+..++++++.+|+++.+++.+|.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 4688999999999999999999999999999999999998863
No 197
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.93 E-value=9.6e-05 Score=78.20 Aligned_cols=113 Identities=11% Similarity=0.153 Sum_probs=98.7
Q ss_pred HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc-
Q psy793 265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM- 343 (414)
Q Consensus 265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~- 343 (414)
.+++.+|..|-+.|++++|...|+++|++ +|.++.++.|+|..|... +.++|+.++.+|+..
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~----------------D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKA----------------DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc----------------CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 47888999999999999999999999999 899999999999999999 999999999999854
Q ss_pred -------------------CCCCHHHH--------HHHH------------HHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy793 344 -------------------EPNNVKAL--------FRRG------------RAQVSMNNFEQGLQDYEQALDLLPNDQQI 384 (414)
Q Consensus 344 -------------------~p~~~~a~--------~~~g------------~~~~~lg~~~~A~~~~~~al~l~P~~~~~ 384 (414)
+|++..-+ -.++ .+|...++|++++..++.+|+++|.|..+
T Consensus 180 i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a 259 (906)
T PRK14720 180 IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKA 259 (906)
T ss_pred HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhh
Confidence 45543332 2224 78889999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy793 385 LKEIAFVRKQ 394 (414)
Q Consensus 385 ~~~l~~~~~~ 394 (414)
+..+..++..
T Consensus 260 ~~~l~~~y~~ 269 (906)
T PRK14720 260 REELIRFYKE 269 (906)
T ss_pred HHHHHHHHHH
Confidence 9999999873
No 198
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.93 E-value=7.2e-05 Score=50.50 Aligned_cols=49 Identities=10% Similarity=0.306 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q psy793 349 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH 397 (414)
Q Consensus 349 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~ 397 (414)
..+|.+|.+++++|+|++|....+.+|+++|+|..+......+..++.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999999888888776654
No 199
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.92 E-value=0.00026 Score=71.35 Aligned_cols=54 Identities=13% Similarity=0.157 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793 349 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE 402 (414)
Q Consensus 349 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 402 (414)
+++|.+|+.|-.+|++++|+...++|++..|...+.....++++...++..+..
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa 248 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAA 248 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 577999999999999999999999999999999999999999999888877654
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.88 E-value=0.00024 Score=60.38 Aligned_cols=116 Identities=19% Similarity=0.243 Sum_probs=95.0
Q ss_pred HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793 265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 344 (414)
Q Consensus 265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 344 (414)
......|+.+...|++.+|..+|.+++.=+ -..+..+++.+|.+.+.++++..|...+++..+.+
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~---------------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~ 154 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGI---------------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN 154 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccc---------------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence 445678999999999999999999999641 12345678899999999999999999999999998
Q ss_pred CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793 345 PN--NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR 396 (414)
Q Consensus 345 p~--~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 396 (414)
|. .+..++-+|.++..+|.+.+|...|+.++...|+ +.+.-.....+.+++
T Consensus 155 pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qg 207 (251)
T COG4700 155 PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQG 207 (251)
T ss_pred CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhc
Confidence 85 5678889999999999999999999999999986 344444444444444
No 201
>KOG1127|consensus
Probab=97.85 E-value=9.5e-05 Score=76.83 Aligned_cols=139 Identities=14% Similarity=0.095 Sum_probs=110.1
Q ss_pred HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC-----------Cc---------HHHHHhhHHHHHHHHHHHHH
Q psy793 263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-----------QS---------KTQQKHFRSYYTAALLNMAA 322 (414)
Q Consensus 263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~-----------~~---------~~~~~~~~~~~~~~~~nla~ 322 (414)
.+..+..+|..|..--+...|..+|.+|.++-.....+ .. ...+..........|..+|.
T Consensus 491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 46677788888888778889999999998762211100 00 00011111233445666899
Q ss_pred HHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793 323 VQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL 401 (414)
Q Consensus 323 ~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~ 401 (414)
.|++.+++..|+..++.||..+|.+..+|..+|.+|...|+|.-|++.|.+|..++|.+...+...+.++..++++++.
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998888774
No 202
>KOG4555|consensus
Probab=97.85 E-value=0.00034 Score=55.95 Aligned_cols=83 Identities=18% Similarity=0.201 Sum_probs=66.9
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHH
Q psy793 319 NMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ----QILKEIAFVRKQ 394 (414)
Q Consensus 319 nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~----~~~~~l~~~~~~ 394 (414)
.-|.++...++.+.|++.+.++|.+-|.++.+|.++++++.-+|+.++|+.++++|+++..+-. .+....+.+++.
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 3566777899999999999999999999999999999999999999999999999999975432 233444555555
Q ss_pred HHHHHHH
Q psy793 395 MRHHLNL 401 (414)
Q Consensus 395 ~~~~~~~ 401 (414)
.++....
T Consensus 128 ~g~dd~A 134 (175)
T KOG4555|consen 128 LGNDDAA 134 (175)
T ss_pred hCchHHH
Confidence 5544443
No 203
>KOG1127|consensus
Probab=97.77 E-value=0.00012 Score=76.09 Aligned_cols=114 Identities=12% Similarity=0.163 Sum_probs=103.0
Q ss_pred HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC
Q psy793 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN 346 (414)
Q Consensus 267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~ 346 (414)
+..+|-.|.+.+++..|+..++.|++. +|.+..+|..+|.+|...|.|..|++.+++|..++|.
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~----------------dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRT----------------DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcC----------------CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 445899999999999999999999999 9999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793 347 NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR 396 (414)
Q Consensus 347 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 396 (414)
+.-+-|..|.....+|+|.+|+..+...+..-......+..++.+..+..
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~a 678 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDA 678 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999999999999999999877666666666666655443
No 204
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.75 E-value=6.5e-05 Score=45.66 Aligned_cols=33 Identities=24% Similarity=0.446 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC
Q psy793 315 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNN 347 (414)
Q Consensus 315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~ 347 (414)
.+++.+|.+++++|+|++|+.+++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 578999999999999999999999999999975
No 205
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.74 E-value=0.00028 Score=66.98 Aligned_cols=120 Identities=10% Similarity=0.151 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCc--HHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHH
Q psy793 257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS--KTQQKHFRSYYTAALLNMAAVQLKFKAYKRAI 334 (414)
Q Consensus 257 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~--~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~ 334 (414)
+.++-+........|...|++++|..|+-.|..||++......... .....+.......+-..+..||+++++.+.|+
T Consensus 169 ~PqiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlAL 248 (569)
T PF15015_consen 169 LPQIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLAL 248 (569)
T ss_pred ChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHH
Confidence 4455566777788899999999999999999999999865443221 22333334445567778999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy793 335 NLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD 376 (414)
Q Consensus 335 ~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~ 376 (414)
...-+.|-++|.+...|++.|.|...+.+|.+|.+.+--|.-
T Consensus 249 nh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 249 NHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred HHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887766544
No 206
>KOG1130|consensus
Probab=97.73 E-value=0.00037 Score=66.11 Aligned_cols=121 Identities=16% Similarity=0.134 Sum_probs=93.8
Q ss_pred HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793 265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 344 (414)
Q Consensus 265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 344 (414)
+++.+.||.+.=.|+|+.|+++|++++.+.-... .........+.+|..|.-+++|++||.+..+-|.+.
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg----------~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG----------NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc----------chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999998843222 134445667889999999999999999999988774
Q ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CC-CHHHHHHHHHHHHHH
Q psy793 345 ------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL-----PN-DQQILKEIAFVRKQM 395 (414)
Q Consensus 345 ------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~-----P~-~~~~~~~l~~~~~~~ 395 (414)
-....+++.+|.++..+|+.++|+...++.+++. |. ...++.+|..+...+
T Consensus 306 qeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~l 368 (639)
T KOG1130|consen 306 QELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILEL 368 (639)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHh
Confidence 2356899999999999999999999998888764 22 234555555544433
No 207
>KOG2796|consensus
Probab=97.72 E-value=0.00089 Score=60.03 Aligned_cols=118 Identities=15% Similarity=0.239 Sum_probs=93.4
Q ss_pred HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCC
Q psy793 266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP 345 (414)
Q Consensus 266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p 345 (414)
.....|...++-|+.+.|..+++..-.-. +....-.....++.|.+.+|+-.++|.+|...+++++..||
T Consensus 214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~----------~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~ 283 (366)
T KOG2796|consen 214 LLSGLGRISMQIGDIKTAEKYFQDVEKVT----------QKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDP 283 (366)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHH----------hhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCC
Confidence 35667888888888888887777443221 11111244567889999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHH
Q psy793 346 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND---QQILKEIAFVRK 393 (414)
Q Consensus 346 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~---~~~~~~l~~~~~ 393 (414)
.++.+-.++|.|++.+|+..+|++..+.+++..|.. .....+|..++.
T Consensus 284 ~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyE 334 (366)
T KOG2796|consen 284 RNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYE 334 (366)
T ss_pred CchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999974 444455554443
No 208
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.71 E-value=0.00016 Score=67.75 Aligned_cols=102 Identities=16% Similarity=0.131 Sum_probs=78.9
Q ss_pred hhhHHhhhc--CHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC
Q psy793 270 SGNEYFKLN--RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN 347 (414)
Q Consensus 270 ~G~~~~~~~--~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~ 347 (414)
.+...+..| .+.+|...|++..+. -+..+.++..+|.|++.+|+|++|...+.+|+..+|.+
T Consensus 171 ~awv~l~~g~e~~~~A~y~f~El~~~----------------~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 171 EAWVNLATGGEKYQDAFYIFEELSDK----------------FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHCC----------------S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHhc----------------cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 333444444 578888888775432 23456778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCHHHHHH
Q psy793 348 VKALFRRGRAQVSMNNF-EQGLQDYEQALDLLPNDQQILKE 387 (414)
Q Consensus 348 ~~a~~~~g~~~~~lg~~-~~A~~~~~~al~l~P~~~~~~~~ 387 (414)
+.++.+++.+...+|+. +.+.+.+.+....+|+++-+...
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~ 275 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDL 275 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHH
Confidence 99999999999999998 66778888888899998765543
No 209
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.69 E-value=0.00025 Score=64.81 Aligned_cols=80 Identities=13% Similarity=0.062 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHH
Q psy793 313 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA---LFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ---QILK 386 (414)
Q Consensus 313 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a---~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~---~~~~ 386 (414)
....++..|.-+++.|+|++|+..+++++...|....+ .+.+|.+++.+++|++|+..|++.++++|+++ .+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 34557788999999999999999999999999988654 59999999999999999999999999999885 4555
Q ss_pred HHHHHH
Q psy793 387 EIAFVR 392 (414)
Q Consensus 387 ~l~~~~ 392 (414)
.++.+.
T Consensus 111 ~~g~~~ 116 (243)
T PRK10866 111 MRGLTN 116 (243)
T ss_pred HHHHhh
Confidence 555543
No 210
>KOG4642|consensus
Probab=97.67 E-value=7.9e-05 Score=65.64 Aligned_cols=82 Identities=17% Similarity=0.126 Sum_probs=73.3
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q psy793 320 MAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL 399 (414)
Q Consensus 320 la~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~ 399 (414)
-+.+++.-++|..|+..|.+||.++|..+..|-++|.||+.+.+|+.+..+.++|+++.|+...++.-++......+.+.
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 45667778899999999999999999999999999999999999999999999999999999888888888877766655
Q ss_pred HH
Q psy793 400 NL 401 (414)
Q Consensus 400 ~~ 401 (414)
+.
T Consensus 96 ea 97 (284)
T KOG4642|consen 96 EA 97 (284)
T ss_pred HH
Confidence 43
No 211
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.67 E-value=7.8e-05 Score=45.38 Aligned_cols=32 Identities=28% Similarity=0.638 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy793 349 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 380 (414)
Q Consensus 349 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 380 (414)
++|+.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 56778888888888888888888888888774
No 212
>KOG3785|consensus
Probab=97.65 E-value=0.00013 Score=67.83 Aligned_cols=111 Identities=12% Similarity=0.186 Sum_probs=75.5
Q ss_pred hhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh-------
Q psy793 270 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL------- 342 (414)
Q Consensus 270 ~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~------- 342 (414)
.|.-+|..|+|++|+..|+-+..- +.-...++.|+|.|++-+|.|.+|.....+|-+
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~----------------~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RL 126 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNK----------------DDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRL 126 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhcc----------------CCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHH
Confidence 677899999999999999887764 333456777788888888888777666554421
Q ss_pred -------cC------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793 343 -------ME------------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR 396 (414)
Q Consensus 343 -------~~------------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 396 (414)
++ .+..+-...+|.+++..-.|++|+..|++.+.-+|+...+...++.|+.++.
T Consensus 127 lfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlD 199 (557)
T KOG3785|consen 127 LFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLD 199 (557)
T ss_pred HHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcc
Confidence 11 0112233455666666667777777777777777777777777777665553
No 213
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.62 E-value=0.00019 Score=62.53 Aligned_cols=96 Identities=11% Similarity=0.032 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy793 310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA 389 (414)
Q Consensus 310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~ 389 (414)
+.....+++.+|..|-.+|-+.-|..+++++|.+.|+-+.++..+|.-+..-|+|+.|.+.|...++++|.+..+..+.+
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg 140 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 140 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999988888777
Q ss_pred HHHHHHHHHHHHHHHH
Q psy793 390 FVRKQMRHHLNLEKMT 405 (414)
Q Consensus 390 ~~~~~~~~~~~~~k~~ 405 (414)
...---++..-.+...
T Consensus 141 i~~YY~gR~~LAq~d~ 156 (297)
T COG4785 141 IALYYGGRYKLAQDDL 156 (297)
T ss_pred eeeeecCchHhhHHHH
Confidence 6654444444444433
No 214
>KOG0495|consensus
Probab=97.61 E-value=0.00078 Score=67.41 Aligned_cols=130 Identities=15% Similarity=0.119 Sum_probs=100.7
Q ss_pred HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC-----------CcHHHHHhh------HHHHHHHHHHHHHHHHHhhC
Q psy793 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-----------QSKTQQKHF------RSYYTAALLNMAAVQLKFKA 329 (414)
Q Consensus 267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~-----------~~~~~~~~~------~~~~~~~~~nla~~~~~l~~ 329 (414)
+..-+..+++.|+..+|.....+|++..+..... ...+....+ ..-...+|+.-+....-+++
T Consensus 587 wlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~ 666 (913)
T KOG0495|consen 587 WLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDN 666 (913)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhh
Confidence 4456677888899999999999998874321110 011111111 11123567777777778999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793 330 YKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR 396 (414)
Q Consensus 330 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 396 (414)
.++|+..|+++|+.-|+..|.|+.+|+++..+++.+.|...|...++.-|+..-.+..|.++....+
T Consensus 667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999998888877665
No 215
>PRK10941 hypothetical protein; Provisional
Probab=97.60 E-value=0.00084 Score=61.93 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy793 311 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAF 390 (414)
Q Consensus 311 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~ 390 (414)
......+.|+=.+|++.++|+.|+.+++.++.++|+++.-+--+|.+|.++|.+..|..+++..++..|+++.+......
T Consensus 178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 34556788999999999999999999999999999999988889999999999999999999999999999887655544
Q ss_pred H
Q psy793 391 V 391 (414)
Q Consensus 391 ~ 391 (414)
+
T Consensus 258 l 258 (269)
T PRK10941 258 I 258 (269)
T ss_pred H
Confidence 4
No 216
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.58 E-value=0.00046 Score=56.67 Aligned_cols=80 Identities=16% Similarity=0.186 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHH
Q psy793 314 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ---ILKE 387 (414)
Q Consensus 314 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~---~~~~ 387 (414)
...+++.|...++.|+|++|++.++.+....|-. ..+.+.++.+|+..++|++|+..+++-++++|.++. ++..
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 3457889999999999999999999999887754 578999999999999999999999999999999854 4444
Q ss_pred HHHHHH
Q psy793 388 IAFVRK 393 (414)
Q Consensus 388 l~~~~~ 393 (414)
.+.+.-
T Consensus 90 ~gL~~~ 95 (142)
T PF13512_consen 90 RGLSYY 95 (142)
T ss_pred HHHHHH
Confidence 444443
No 217
>KOG4151|consensus
Probab=97.58 E-value=0.00028 Score=72.13 Aligned_cols=124 Identities=19% Similarity=0.285 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHH--hhCHHHHH
Q psy793 257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK--FKAYKRAI 334 (414)
Q Consensus 257 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--l~~~~~A~ 334 (414)
.......+..++..||.+|.+++|..|...|..++.+++.. ......+..|.+.||+. +++|..++
T Consensus 46 i~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~------------~~~~a~~~~~~~s~~m~~~l~~~~~~~ 113 (748)
T KOG4151|consen 46 IEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKD------------HHVVATLRSNQASCYMQLGLGEYPKAI 113 (748)
T ss_pred hHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheecccc------------chhhhhHHHHHHHHHhhcCccchhhhc
Confidence 66777788899999999999999999999999999996632 35667888999998887 56899999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy793 335 NLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVR 392 (414)
Q Consensus 335 ~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 392 (414)
..|+-|+...|.-.++++.++.+|..++.++-|++++.-.....|.+..+.....+++
T Consensus 114 ~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk 171 (748)
T KOG4151|consen 114 PECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELK 171 (748)
T ss_pred CchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Confidence 9999999999999999999999999999999999999989999999966655444443
No 218
>KOG0495|consensus
Probab=97.56 E-value=0.0014 Score=65.61 Aligned_cols=118 Identities=12% Similarity=0.057 Sum_probs=100.1
Q ss_pred HhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCH
Q psy793 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNV 348 (414)
Q Consensus 269 ~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~ 348 (414)
..++...-+++.++|+...++||+. -|.+..+|+.+|+++.++++.+.|...|..-++..|+.+
T Consensus 656 Ks~~~er~ld~~eeA~rllEe~lk~----------------fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i 719 (913)
T KOG0495|consen 656 KSANLERYLDNVEEALRLLEEALKS----------------FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI 719 (913)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHHh----------------CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc
Confidence 3444455566777777777777776 678889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793 349 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE 402 (414)
Q Consensus 349 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 402 (414)
-.|..++..-...|..-.|...++++.-.||.+...+...-++..+.+.....+
T Consensus 720 pLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 720 PLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAE 773 (913)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999988877766666666555443
No 219
>KOG3364|consensus
Probab=97.55 E-value=0.002 Score=51.94 Aligned_cols=85 Identities=15% Similarity=0.303 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHhhC---HHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy793 313 YTAALLNMAAVQLKFKA---YKRAINLCDDILL-MEPN-NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387 (414)
Q Consensus 313 ~~~~~~nla~~~~~l~~---~~~A~~~~~~al~-~~p~-~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~ 387 (414)
.....+|+|+|+.+..+ .++.+..++..++ -.|. .-...|.+|..++++++|+.|+.+.+.+++.+|+|..+...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 34667899999988654 6778889999996 4443 34688999999999999999999999999999999999888
Q ss_pred HHHHHHHHHH
Q psy793 388 IAFVRKQMRH 397 (414)
Q Consensus 388 l~~~~~~~~~ 397 (414)
-..+..++.+
T Consensus 111 k~~ied~itk 120 (149)
T KOG3364|consen 111 KETIEDKITK 120 (149)
T ss_pred HHHHHHHHhh
Confidence 8777766554
No 220
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.53 E-value=0.0045 Score=58.67 Aligned_cols=127 Identities=13% Similarity=0.124 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q psy793 259 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD 338 (414)
Q Consensus 259 ~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~ 338 (414)
.+...+......|-.-+..|+|.+|.+...++-+. .+.-..+|.--|.+-.++|+++.|-.+..
T Consensus 79 rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~----------------~e~p~l~~l~aA~AA~qrgd~~~an~yL~ 142 (400)
T COG3071 79 RKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEH----------------GEQPVLAYLLAAEAAQQRGDEDRANRYLA 142 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhc----------------CcchHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 45567788888899999999999999999988776 56666778888889999999999999999
Q ss_pred HHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793 339 DILLMEPN-NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL 401 (414)
Q Consensus 339 ~al~~~p~-~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~ 401 (414)
++-+..++ +--....++..+...++++.|.....++++..|.++.+......++..+++..+.
T Consensus 143 eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~l 206 (400)
T COG3071 143 EAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQAL 206 (400)
T ss_pred HHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHH
Confidence 99999544 4456789999999999999999999999999999999999999999988887764
No 221
>KOG4507|consensus
Probab=97.42 E-value=0.00043 Score=68.26 Aligned_cols=108 Identities=17% Similarity=0.233 Sum_probs=94.3
Q ss_pred hhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHH-HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCH
Q psy793 270 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYT-AALLNMAAVQLKFKAYKRAINLCDDILLMEPNNV 348 (414)
Q Consensus 270 ~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~-~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~ 348 (414)
.|.-+-..|+...|+++...|+.. .|... .-..|+|.++++-+....|-..+.++|.++...+
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~----------------~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sep 676 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNL----------------APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEP 676 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhcc----------------ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCc
Confidence 344445678999999999999987 44333 3467999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy793 349 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK 393 (414)
Q Consensus 349 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 393 (414)
-.+|.+|.++..+.+.+.|++.|+.|++++|++..+...|..+..
T Consensus 677 l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 677 LTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 899999999999999999999999999999999999998887765
No 222
>KOG3785|consensus
Probab=97.41 E-value=0.0012 Score=61.65 Aligned_cols=102 Identities=9% Similarity=0.107 Sum_probs=75.2
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHH
Q psy793 273 EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALF 352 (414)
Q Consensus 273 ~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~ 352 (414)
.+..+.+|..|+...+-.+.. .. .....+-.-+|-|++.+|+|++|+..|+-+.+-+-.+++.+.
T Consensus 31 dfls~rDytGAislLefk~~~-------~~--------EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~v 95 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNL-------DR--------EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGV 95 (557)
T ss_pred HHHhcccchhHHHHHHHhhcc-------ch--------hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccch
Confidence 455668888888887777644 11 111233345789999999999999999999998777889999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy793 353 RRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK 393 (414)
Q Consensus 353 ~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 393 (414)
++|.|++-+|.|.+|.....+| |.++-..+.+-.+..
T Consensus 96 nLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlah 132 (557)
T KOG3785|consen 96 NLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAH 132 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHH
Confidence 9999999999999998776665 444444444444433
No 223
>KOG2053|consensus
Probab=97.40 E-value=0.0027 Score=65.72 Aligned_cols=118 Identities=12% Similarity=0.137 Sum_probs=100.9
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHH
Q psy793 273 EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALF 352 (414)
Q Consensus 273 ~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~ 352 (414)
.....++|.+|+....+.++- .|...-+..--|..+.++|++++|..+++..-...+++...+-
T Consensus 18 d~ld~~qfkkal~~~~kllkk----------------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq 81 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK----------------HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQ 81 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH----------------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHH
Confidence 445668899999999998887 6666677777889999999999999766666666777888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy793 353 RRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYA 407 (414)
Q Consensus 353 ~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~ 407 (414)
.+-.||..++.+++|...|++++..+|+ .+....+-.++.+.+.+.+.++..++
T Consensus 82 ~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~ 135 (932)
T KOG2053|consen 82 FLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQ 135 (932)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 88888889999999999888775543
No 224
>KOG1941|consensus
Probab=97.40 E-value=0.0013 Score=61.49 Aligned_cols=108 Identities=16% Similarity=0.246 Sum_probs=85.5
Q ss_pred HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHH-HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCC
Q psy793 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRS-YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP 345 (414)
Q Consensus 267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p 345 (414)
....|+.....+.|+++++.|++|+++..... ++ +...++..++..|-+++++++|+-+..+|+++..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~-----------D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~ 193 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNND-----------DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVN 193 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC-----------CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHH
Confidence 34488999999999999999999999965544 22 3346788999999999999999999999987742
Q ss_pred C------C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHH
Q psy793 346 N------N----VKALFRRGRAQVSMNNFEQGLQDYEQALDLL--PNDQQIL 385 (414)
Q Consensus 346 ~------~----~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~--P~~~~~~ 385 (414)
. + .-++|+++.++..+|+.-+|.++.+.|.++. -+|..++
T Consensus 194 s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 194 SYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 2 1 3478899999999999999999999988764 3454443
No 225
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.37 E-value=0.0078 Score=53.74 Aligned_cols=104 Identities=12% Similarity=0.179 Sum_probs=77.5
Q ss_pred hhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCH-------HHHHHHHHHHHh
Q psy793 270 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY-------KRAINLCDDILL 342 (414)
Q Consensus 270 ~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~-------~~A~~~~~~al~ 342 (414)
.+..+-....+++|++.|.-||-....... .......+++.+|++|..+++. ..|+..+.+|++
T Consensus 83 ~~~~~~~~Rt~~~ai~~YkLAll~~~~~~~---------~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~ 153 (214)
T PF09986_consen 83 KPRDFSGERTLEEAIESYKLALLCAQIKKE---------KPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYE 153 (214)
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHhCC---------CHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 344666778999999999999987432221 1335678899999999999994 455555555554
Q ss_pred cCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy793 343 MEP------NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ 382 (414)
Q Consensus 343 ~~p------~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~ 382 (414)
... +....+|-+|...+++|++++|+..|.+++...-...
T Consensus 154 ~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 154 NEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred hCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 432 2357889999999999999999999999998754433
No 226
>KOG4814|consensus
Probab=97.37 E-value=0.0027 Score=63.40 Aligned_cols=106 Identities=12% Similarity=0.152 Sum_probs=91.3
Q ss_pred HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 341 (414)
Q Consensus 262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 341 (414)
-.-..+++.+...|+..+|..|++.|...+..++... .+.....+..+++.||+++.+.++|.+++++|-
T Consensus 352 ~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~----------~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE 421 (872)
T KOG4814|consen 352 CIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDN----------YSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAE 421 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchh----------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4456788999999999999999999999998854322 134457889999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793 342 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 377 (414)
Q Consensus 342 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 377 (414)
+.+|.++-.-+..-.+...-+.-++|+....+....
T Consensus 422 ~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 422 EVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred hhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 999999988888888888899999999988877654
No 227
>KOG3081|consensus
Probab=97.34 E-value=0.0039 Score=56.18 Aligned_cols=73 Identities=14% Similarity=0.216 Sum_probs=64.4
Q ss_pred hCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q psy793 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLN 400 (414)
Q Consensus 328 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~ 400 (414)
+++..|.-.|+..-+..|..+..+..+|.|++.+++|++|...++.||..++++++.+.++--+....+...+
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChH
Confidence 4589999999999887788999999999999999999999999999999999999999988887766665533
No 228
>KOG1586|consensus
Probab=97.29 E-value=0.022 Score=50.50 Aligned_cols=126 Identities=17% Similarity=0.193 Sum_probs=91.9
Q ss_pred HHHHHHhhhHHhhh-cCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793 264 IRTIKNSGNEYFKL-NRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 342 (414)
Q Consensus 264 a~~~~~~G~~~~~~-~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 342 (414)
|+.+.+.|..|-.. .++++||.+|++|-+.... .+....-..++...|..--.+++|.+|+..|+++..
T Consensus 113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~----------ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG----------EESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc----------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666655 7899999999999988432 112344557888888888899999999999999986
Q ss_pred cCCCC------HHHHH-HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--HHHHHHHHHHHHHHHH
Q psy793 343 MEPNN------VKALF-RRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ--ILKEIAFVRKQMRHHL 399 (414)
Q Consensus 343 ~~p~~------~~a~~-~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~--~~~~l~~~~~~~~~~~ 399 (414)
-.-+| +|-|+ .-|.|++...|.-.|...+++..+++|.-.. --+.|..+...+.+..
T Consensus 183 ~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d 248 (288)
T KOG1586|consen 183 SSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQD 248 (288)
T ss_pred HhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhh
Confidence 65444 45554 5688999989999999999999999997543 3345555555555443
No 229
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.28 E-value=0.0011 Score=44.80 Aligned_cols=41 Identities=29% Similarity=0.472 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy793 315 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRG 355 (414)
Q Consensus 315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g 355 (414)
.+++.+|.++.++|+|.+|..+++.+|+++|+|..|.--+.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 46788999999999999999999999999999988755443
No 230
>KOG1941|consensus
Probab=97.27 E-value=0.0051 Score=57.71 Aligned_cols=138 Identities=15% Similarity=0.272 Sum_probs=100.3
Q ss_pred HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC------------C---------------cHHHHHhhHHHHHH
Q psy793 263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS------------Q---------------SKTQQKHFRSYYTA 315 (414)
Q Consensus 263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~------------~---------------~~~~~~~~~~~~~~ 315 (414)
++......|..++...++++|+..+.+.|..++....- . +-....+.......
T Consensus 5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e 84 (518)
T KOG1941|consen 5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE 84 (518)
T ss_pred hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778889999999999999999888766422100 0 00011111234457
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------H
Q psy793 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNN-----VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ------I 384 (414)
Q Consensus 316 ~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~-----~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~------~ 384 (414)
+|.|++..+.++.+|.+++.+++..+.+.... ..++.-+|.++..++.++++++.|++|+++..++.+ +
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 89999999999999999999999999875333 367888999999999999999999999998655432 3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy793 385 LKEIAFVRKQMRHHLN 400 (414)
Q Consensus 385 ~~~l~~~~~~~~~~~~ 400 (414)
-..|+.+..++++..+
T Consensus 165 cv~Lgslf~~l~D~~K 180 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEK 180 (518)
T ss_pred hhhHHHHHHHHHhhhH
Confidence 4455566666665554
No 231
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.26 E-value=0.00015 Score=44.29 Aligned_cols=34 Identities=32% Similarity=0.396 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHH
Q psy793 286 KYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAIN 335 (414)
Q Consensus 286 ~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~ 335 (414)
+|++||++ +|....+|+|+|.+|...|++++|++
T Consensus 1 ~y~kAie~----------------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL----------------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH----------------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 48899999 99999999999999999999999863
No 232
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.012 Score=54.06 Aligned_cols=130 Identities=15% Similarity=0.133 Sum_probs=99.6
Q ss_pred HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH-----
Q psy793 265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD----- 339 (414)
Q Consensus 265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~----- 339 (414)
......+..+...+++.+|...+..++.. .+....+...++.||+.+|+.+.|...+..
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~----------------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~ 198 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQA----------------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQA 198 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHh----------------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc
Confidence 33566788899999999999999999998 666778888999999999998776554332
Q ss_pred -----------------------------HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHH
Q psy793 340 -----------------------------ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP--NDQQILKEI 388 (414)
Q Consensus 340 -----------------------------al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P--~~~~~~~~l 388 (414)
.+.-+|++..+-+.+|..+...|++++|++.+-..++.+- +|..+++.+
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 2233799999999999999999999999999998888764 356777777
Q ss_pred HHHHHHHH----HHHHHHHHHHHhhh
Q psy793 389 AFVRKQMR----HHLNLEKMTYARMF 410 (414)
Q Consensus 389 ~~~~~~~~----~~~~~~k~~~~~~f 410 (414)
-.+...++ ...+-.|++|+-+|
T Consensus 279 le~f~~~g~~Dp~~~~~RRkL~slLy 304 (304)
T COG3118 279 LELFEAFGPADPLVLAYRRKLYSLLY 304 (304)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHhhC
Confidence 77776666 22333455555443
No 233
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.25 E-value=0.00048 Score=41.76 Aligned_cols=33 Identities=21% Similarity=0.460 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC
Q psy793 315 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNN 347 (414)
Q Consensus 315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~ 347 (414)
.+|+.+|.+|.++|++++|+.+++++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578999999999999999999999999999854
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.24 E-value=0.0029 Score=63.54 Aligned_cols=101 Identities=9% Similarity=0.099 Sum_probs=81.7
Q ss_pred HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793 265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 344 (414)
Q Consensus 265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 344 (414)
--+...|..+..+|+.++|++.|++|+..- .+ ..+...-+++.+++|++-+.+|++|..++.+.++.+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q---------~~---~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQ---------SE---WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccch---------hh---HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 346678999999999999999999999541 11 234456789999999999999999999999999976
Q ss_pred CCCHHHH--HHHHHHHHHcCCH-------HHHHHHHHHHHhhC
Q psy793 345 PNNVKAL--FRRGRAQVSMNNF-------EQGLQDYEQALDLL 378 (414)
Q Consensus 345 p~~~~a~--~~~g~~~~~lg~~-------~~A~~~~~~al~l~ 378 (414)
.. .+++ |..|.|+..+++. ++|.+.|+++-.+-
T Consensus 336 ~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 336 KW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred cc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 54 4554 5668899999999 88888888876654
No 235
>KOG2376|consensus
Probab=97.22 E-value=0.004 Score=61.82 Aligned_cols=90 Identities=17% Similarity=0.290 Sum_probs=72.7
Q ss_pred HHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC---
Q psy793 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME--- 344 (414)
Q Consensus 268 ~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~--- 344 (414)
++++...|+.+..++|+.+++ . + ++....+..-+|..++++++|++|+..|+..++.+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~-~--~----------------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd 143 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK-G--L----------------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD 143 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh-c--c----------------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch
Confidence 577888888889899888887 1 2 33445567778999999999999999999886432
Q ss_pred ---------------------------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy793 345 ---------------------------PN-NVKALFRRGRAQVSMNNFEQGLQDYEQALD 376 (414)
Q Consensus 345 ---------------------------p~-~~~a~~~~g~~~~~lg~~~~A~~~~~~al~ 376 (414)
|. ....+|+.|.++...|+|.+|++.+++|++
T Consensus 144 ~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~ 203 (652)
T KOG2376|consen 144 QDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR 203 (652)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 22 456889999999999999999999999944
No 236
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.19 E-value=0.0038 Score=53.13 Aligned_cols=71 Identities=17% Similarity=0.273 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q psy793 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNN----------FEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 398 (414)
Q Consensus 329 ~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~----------~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~ 398 (414)
-|+.|.+.++.....+|.++.++++-|.++..+.+ +++|+.-|+.|+.++|+...+...++.++......
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 37899999999999999999999999999988854 47788999999999999999999999998877764
Q ss_pred H
Q psy793 399 L 399 (414)
Q Consensus 399 ~ 399 (414)
.
T Consensus 86 ~ 86 (186)
T PF06552_consen 86 T 86 (186)
T ss_dssp -
T ss_pred c
Confidence 3
No 237
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.14 E-value=0.00084 Score=40.25 Aligned_cols=31 Identities=16% Similarity=0.561 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy793 350 ALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 380 (414)
Q Consensus 350 a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 380 (414)
|+|++|.++..+|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5677777777777777777777777777775
No 238
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.13 E-value=0.013 Score=51.01 Aligned_cols=108 Identities=25% Similarity=0.436 Sum_probs=81.5
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC-CHHHH
Q psy793 273 EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN-NVKAL 351 (414)
Q Consensus 273 ~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~-~~~a~ 351 (414)
.++..++++.|+..|.+++.. ... .......+..++..+...++++.|+..+.+++...+. ...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-~~~------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 205 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-DPE------------LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEAL 205 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCC------------ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHH
Confidence 788889999999999998664 110 0134455556666678888899999999999988888 68888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy793 352 FRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK 393 (414)
Q Consensus 352 ~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 393 (414)
..++.++...++++.|+..+.+++...|........+..+..
T Consensus 206 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (291)
T COG0457 206 LNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLL 247 (291)
T ss_pred HHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH
Confidence 888999998889999999999999988875444444444444
No 239
>KOG0551|consensus
Probab=97.09 E-value=0.0029 Score=58.59 Aligned_cols=83 Identities=22% Similarity=0.200 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy793 315 AALLNMAAVQLKFKAYKRAINLCDDILLMEPN----NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAF 390 (414)
Q Consensus 315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~----~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~ 390 (414)
.-|-.-|.=|++-++|..|+..|++.|+..-. ++-.|.+||.|.+.+|+|..|+.+..+|+.++|.+..+...-+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 34456677889999999999999999988543 35578899999999999999999999999999999888888888
Q ss_pred HHHHHHH
Q psy793 391 VRKQMRH 397 (414)
Q Consensus 391 ~~~~~~~ 397 (414)
|.-+++.
T Consensus 162 c~~eLe~ 168 (390)
T KOG0551|consen 162 CLLELER 168 (390)
T ss_pred HHHHHHH
Confidence 8877777
No 240
>KOG1585|consensus
Probab=97.05 E-value=0.062 Score=48.04 Aligned_cols=131 Identities=11% Similarity=0.121 Sum_probs=91.2
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
+..+...++.|-..++|++|..+..+|++..+.+. .--.-...|-..+....++..|.++..++++|..+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnr----------slfhAAKayEqaamLake~~klsEvvdl~eKAs~l 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR----------SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc----------cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44455566666678899999999999998744333 11233567778888888999999999999999877
Q ss_pred C-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHHHHHHHHHHH
Q psy793 344 E-----PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ------QILKEIAFVRKQMRHHLNLEKM 404 (414)
Q Consensus 344 ~-----p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~------~~~~~l~~~~~~~~~~~~~~k~ 404 (414)
. |+-+-.-.-+|--.....+.++|+..|++++.+--++. +....+++++.++++..+..+.
T Consensus 101 Y~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a 172 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATA 172 (308)
T ss_pred HHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHH
Confidence 3 44444444444445566889999999999998754442 3344555666666666665543
No 241
>KOG2376|consensus
Probab=96.99 E-value=0.011 Score=58.93 Aligned_cols=119 Identities=11% Similarity=0.096 Sum_probs=82.6
Q ss_pred HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCC-----------cHHHHHhhH------HHHHHHHHHHHHHHHHh
Q psy793 265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQ-----------SKTQQKHFR------SYYTAALLNMAAVQLKF 327 (414)
Q Consensus 265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~-----------~~~~~~~~~------~~~~~~~~nla~~~~~l 327 (414)
..++..-|.+-+.++|++|+..-.+.|...+....+. ..++...+. .......+..|.|++++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 4566667777788888888887777776642111110 011111110 11112236889999999
Q ss_pred hCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy793 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 386 (414)
Q Consensus 328 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~ 386 (414)
++.++|+.+++ .+++.+.+.+.-+|+.++++++|++|++.|+..++-+-++.+...
T Consensus 93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~ 148 (652)
T KOG2376|consen 93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEER 148 (652)
T ss_pred ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHH
Confidence 99999999988 667777889999999999999999999999999887766554443
No 242
>KOG3824|consensus
Probab=96.96 E-value=0.0046 Score=56.73 Aligned_cols=75 Identities=24% Similarity=0.290 Sum_probs=66.9
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy793 318 LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVR 392 (414)
Q Consensus 318 ~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 392 (414)
.+.|.-..+.|+.++|...++.||.++|+++.++..+|.....-++.-+|-.+|-+|+.++|.|.+++.+.++..
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 344455567999999999999999999999999999999999999999999999999999999999887766554
No 243
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.95 E-value=0.014 Score=57.32 Aligned_cols=59 Identities=19% Similarity=0.152 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy793 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPN--NVKALFRRGRAQVSMNNFEQGLQDYEQA 374 (414)
Q Consensus 316 ~~~nla~~~~~l~~~~~A~~~~~~al~~~p~--~~~a~~~~g~~~~~lg~~~~A~~~~~~a 374 (414)
+...+|.|..++|+.++|++.+...++..|. +-..++++..++..++.|.++.+.+.+.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3445556666666666666666666555443 3345556666666666666655555553
No 244
>KOG0376|consensus
Probab=96.95 E-value=0.001 Score=64.55 Aligned_cols=82 Identities=21% Similarity=0.240 Sum_probs=67.9
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q psy793 318 LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH 397 (414)
Q Consensus 318 ~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~ 397 (414)
-+-|.-+++-+.|+.|+..|.+||+++|+++..+-.++.++...++|..|+.++.+|++++|....+....+.+...+.+
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 45666778899999999999999999999999999999999999999999999999999999876554444444444443
Q ss_pred HH
Q psy793 398 HL 399 (414)
Q Consensus 398 ~~ 399 (414)
..
T Consensus 88 ~~ 89 (476)
T KOG0376|consen 88 FK 89 (476)
T ss_pred HH
Confidence 33
No 245
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.93 E-value=0.05 Score=47.18 Aligned_cols=99 Identities=25% Similarity=0.359 Sum_probs=49.3
Q ss_pred HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC
Q psy793 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN 346 (414)
Q Consensus 267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~ 346 (414)
....+..+...+.+..++..+..++.. ...+.....+...+.++..++++..++..+..++...+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALEL--------------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPD 127 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhh--------------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCC
Confidence 344555555555555565555555541 002334444555555555555555555555555555444
Q ss_pred CHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCC
Q psy793 347 NVKALFRRGR-AQVSMNNFEQGLQDYEQALDLLP 379 (414)
Q Consensus 347 ~~~a~~~~g~-~~~~lg~~~~A~~~~~~al~l~P 379 (414)
+.......+. ++...++++.|...|++++..+|
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (291)
T COG0457 128 PDLAEALLALGALYELGDYEEALELYEKALELDP 161 (291)
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4333333333 45555555555555555555444
No 246
>KOG2471|consensus
Probab=96.93 E-value=0.0014 Score=63.46 Aligned_cols=119 Identities=9% Similarity=0.074 Sum_probs=87.3
Q ss_pred HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHH--HHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTA--ALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~--~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
.+..+.+.++..|+|..|.+.....=-. .+..-...|.... .|.|+|.++++++.|.-+..++.+||+.
T Consensus 242 ~l~LKsq~eY~~gn~~kA~KlL~~sni~---------~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N 312 (696)
T KOG2471|consen 242 ALLLKSQLEYAHGNHPKAMKLLLVSNIH---------KEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRN 312 (696)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhcccc---------cccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHH
Confidence 3455667777777777776654321100 0111111233333 4689999999999999999999999951
Q ss_pred ---------C---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy793 344 ---------E---------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK 393 (414)
Q Consensus 344 ---------~---------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 393 (414)
. ......+|+.|..|.+.|+.-.|..+|.++.+....++.+|..+++|=.
T Consensus 313 ~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 313 SCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred HHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 1 1345789999999999999999999999999999999999999988743
No 247
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.92 E-value=0.028 Score=48.52 Aligned_cols=104 Identities=20% Similarity=0.165 Sum_probs=80.2
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
+......+..++..+++++|+...+.++..-. .......+-.++|.+.+.++++++|+..++..-.-
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~-------------De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~ 155 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTK-------------DENLKALAALRLARVQLQQKKADAALKTLDTIKEE 155 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccch-------------hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc
Confidence 44566788899999999999999999996511 03344567789999999999999998876654321
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy793 344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381 (414)
Q Consensus 344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~ 381 (414)
+ -.+..--.+|.++..+|+-++|++.|+++++..++.
T Consensus 156 ~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 156 S-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred c-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 1 112234678999999999999999999999998443
No 248
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.88 E-value=0.0018 Score=37.73 Aligned_cols=31 Identities=39% Similarity=0.761 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy793 350 ALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 380 (414)
Q Consensus 350 a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 380 (414)
+++++|.++..++++++|+..|+++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666666666666666666666665554
No 249
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.82 E-value=0.0023 Score=39.45 Aligned_cols=26 Identities=38% Similarity=0.551 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy793 350 ALFRRGRAQVSMNNFEQGLQDYEQAL 375 (414)
Q Consensus 350 a~~~~g~~~~~lg~~~~A~~~~~~al 375 (414)
+|.++|.+|..+|+|++|+..|++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666666666666666666644
No 250
>KOG1308|consensus
Probab=96.79 E-value=0.00093 Score=62.10 Aligned_cols=78 Identities=12% Similarity=0.210 Sum_probs=65.9
Q ss_pred HhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793 326 KFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 403 (414)
Q Consensus 326 ~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 403 (414)
-.|+++.|++.|..+|.++|..+..|-.++.++..++....|+++|..|++++|+...-......+.+.++...+..+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 367799999999999999999999999999999999999999999999999999876655555555555555554433
No 251
>KOG1585|consensus
Probab=96.78 E-value=0.032 Score=49.82 Aligned_cols=115 Identities=10% Similarity=0.091 Sum_probs=83.8
Q ss_pred HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc---
Q psy793 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM--- 343 (414)
Q Consensus 267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~--- 343 (414)
-..++-.....-+.++|+..|++++.++....+ ..+-...+-..+..+.++++|.+|-..+.+-..+
T Consensus 113 aleKAak~lenv~Pd~AlqlYqralavve~~dr----------~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~ 182 (308)
T KOG1585|consen 113 ALEKAAKALENVKPDDALQLYQRALAVVEEDDR----------DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADK 182 (308)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccch----------HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHH
Confidence 344566677778899999999999988654432 3455678888899999999999997777665432
Q ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCHHHHHHHHHH
Q psy793 344 ---EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL----PNDQQILKEIAFV 391 (414)
Q Consensus 344 ---~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~----P~~~~~~~~l~~~ 391 (414)
-+...+++...-.+|....+|..|.++|+.+.++. |++.....+|-..
T Consensus 183 ~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 183 CDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred HhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 24556777777777888889999999999998874 4444444444333
No 252
>KOG0882|consensus
Probab=96.76 E-value=0.002 Score=61.65 Aligned_cols=145 Identities=19% Similarity=0.177 Sum_probs=101.0
Q ss_pred eEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCCccccc
Q psy793 26 RMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105 (414)
Q Consensus 26 ~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (414)
-|.|+++.+-.|.-++-|..+|. .+++++..|.||+..+++|.||........|- + .+|..
T Consensus 113 ~IAVs~~~sg~i~VvD~~~d~~q----------~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gm-V-EyWs~------- 173 (558)
T KOG0882|consen 113 LIAVSLFKSGKIFVVDGFGDFCQ----------DGYFKKLHFSPVKKIRYNQAGDSAVSIDISGM-V-EYWSA------- 173 (558)
T ss_pred eEEeecccCCCcEEECCcCCcCc----------cceecccccCceEEEEeeccccceeeccccce-e-EeecC-------
Confidence 89999999999999999999994 55599999999999999999986532221110 0 00000
Q ss_pred ccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCC--CcccccccccceeeeccCCCCCCccchhhhhcCCCCCCCC
Q psy793 106 VISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFED--ENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDG 183 (414)
Q Consensus 106 ~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~--e~~~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~~p~ld~ 183 (414)
.+ ...++. ..+.++|+ .-++...... ....+-+|+++-..-+.|+.
T Consensus 174 -------------------------e~-----~~qfPr~~l~~~~K~e-TdLy~f~K~K-t~pts~Efsp~g~qistl~~ 221 (558)
T KOG0882|consen 174 -------------------------EG-----PFQFPRTNLNFELKHE-TDLYGFPKAK-TEPTSFEFSPDGAQISTLNP 221 (558)
T ss_pred -------------------------CC-----cccCcccccccccccc-chhhcccccc-cCccceEEccccCcccccCc
Confidence 00 011222 24456663 4444444433 23345678888888888999
Q ss_pred cceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcCC
Q psy793 184 KNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNSG 221 (414)
Q Consensus 184 ~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~g 221 (414)
+..|||++.++-++++.|..+.+ ....|..++.|.+..
T Consensus 222 DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Ve 260 (558)
T KOG0882|consen 222 DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVE 260 (558)
T ss_pred ccEEEEEEeccchhhhhhhccchhhhhccccccccceee
Confidence 99999999999999999999887 456677777776654
No 253
>KOG2610|consensus
Probab=96.73 E-value=0.028 Score=52.34 Aligned_cols=122 Identities=10% Similarity=-0.032 Sum_probs=72.8
Q ss_pred HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc-
Q psy793 265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM- 343 (414)
Q Consensus 265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~- 343 (414)
+.+...+..++.+|++.+|...+.+.|.- -|.+.-++-..-.+++-+|+...-....++++..
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d----------------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w 167 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDD----------------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW 167 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHh----------------CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc
Confidence 34555677888999999999999999976 3444434333444555556655555666666544
Q ss_pred CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793 344 EPNNV---KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE 402 (414)
Q Consensus 344 ~p~~~---~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 402 (414)
+|+.+ ..+--.+-++...|-|++|.+..++++++||.|.-+...+..+.....+.++..
T Consensus 168 n~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~ 229 (491)
T KOG2610|consen 168 NADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGK 229 (491)
T ss_pred CCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHH
Confidence 44442 222233445556666666666666666666666666555555555444444433
No 254
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.72 E-value=0.0029 Score=37.81 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC
Q psy793 315 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNN 347 (414)
Q Consensus 315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~ 347 (414)
.+++++|.|+.++|++++|+..+++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367899999999999999999999999999874
No 255
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.71 E-value=0.0027 Score=39.16 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793 316 ALLNMAAVQLKFKAYKRAINLCDDILLME 344 (414)
Q Consensus 316 ~~~nla~~~~~l~~~~~A~~~~~~al~~~ 344 (414)
+|.++|.+|.++|+|++|+.+|+++|.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999977553
No 256
>KOG0545|consensus
Probab=96.67 E-value=0.013 Score=52.17 Aligned_cols=90 Identities=12% Similarity=0.169 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHhc--------CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy793 314 TAALLNMAAVQLKFKAYKRAINLCDDILLM--------EPNN----------VKALFRRGRAQVSMNNFEQGLQDYEQAL 375 (414)
Q Consensus 314 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~--------~p~~----------~~a~~~~g~~~~~lg~~~~A~~~~~~al 375 (414)
+.++...|.-++++|+|.+|...|..|+.. .|.. .-.+.+.++|+...++|-++++.....|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 456677888899999999999999999733 3433 3478899999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793 376 DLLPNDQQILKEIAFVRKQMRHHLNLEK 403 (414)
Q Consensus 376 ~l~P~~~~~~~~l~~~~~~~~~~~~~~k 403 (414)
..+|.|..+....+++....=...+.+.
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~ 285 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKA 285 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHH
Confidence 9999999998888887765544444433
No 257
>KOG4340|consensus
Probab=96.66 E-value=0.025 Score=51.89 Aligned_cols=103 Identities=9% Similarity=0.105 Sum_probs=80.7
Q ss_pred HhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy793 274 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFR 353 (414)
Q Consensus 274 ~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~ 353 (414)
+.+..+|.+||++...-.+. .|.....+.-+|.||....+|..|-.+|++.-.+.|...+..+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er----------------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELER----------------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhc----------------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 46667778887777666655 56666788899999999999999999999999999999998889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793 354 RGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR 396 (414)
Q Consensus 354 ~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 396 (414)
.|++++.-+.+.+|++...... +++..+...-.++..++
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~----D~~~L~~~~lqLqaAIk 122 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLL----DNPALHSRVLQLQAAIK 122 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhc----CCHHHHHHHHHHHHHHh
Confidence 9999999999999988766543 23455555555554443
No 258
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.60 E-value=0.054 Score=59.36 Aligned_cols=101 Identities=11% Similarity=0.056 Sum_probs=70.3
Q ss_pred HHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC-
Q psy793 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN- 346 (414)
Q Consensus 268 ~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~- 346 (414)
...|..+...|++++|...+.+++....... .......++.++|.++...|++++|...+++++.+...
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g----------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 564 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHD----------VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ 564 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc----------chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 3455555666666666666666665533211 01223456788899999999999999999999876211
Q ss_pred -------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy793 347 -------NVKALFRRGRAQVSMNNFEQGLQDYEQALDLL 378 (414)
Q Consensus 347 -------~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 378 (414)
....+..+|.++...|++++|...+++++.+.
T Consensus 565 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 565 HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 22345677888999999999999999988764
No 259
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.59 E-value=0.016 Score=52.34 Aligned_cols=71 Identities=17% Similarity=0.233 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy793 314 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 384 (414)
Q Consensus 314 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~ 384 (414)
+.-+++-|...+.-|+|.+|+..++.+....|.+ .++.+-++.++++.++|++|+...++-+.+.|+++.+
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 4568889999999999999999999999887754 5799999999999999999999999999999987643
No 260
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.59 E-value=0.079 Score=44.08 Aligned_cols=86 Identities=19% Similarity=0.230 Sum_probs=65.2
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHhcCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy793 318 LNMAAVQLKFKAYKRAINLCDDILLMEPNN----------------------VKALFRRGRAQVSMNNFEQGLQDYEQAL 375 (414)
Q Consensus 318 ~nla~~~~~l~~~~~A~~~~~~al~~~p~~----------------------~~a~~~~g~~~~~lg~~~~A~~~~~~al 375 (414)
...|......++...++..+.+++.+-... ..++..++..+...|++++|+..+++++
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 344555566778899999999998773211 3466677888999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793 376 DLLPNDQQILKEIAFVRKQMRHHLNLEK 403 (414)
Q Consensus 376 ~l~P~~~~~~~~l~~~~~~~~~~~~~~k 403 (414)
.++|-+..++..+..++...++..+..+
T Consensus 90 ~~dP~~E~~~~~lm~~~~~~g~~~~A~~ 117 (146)
T PF03704_consen 90 ALDPYDEEAYRLLMRALAAQGRRAEALR 117 (146)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 9999999999999999998888766543
No 261
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.57 E-value=0.0033 Score=55.33 Aligned_cols=61 Identities=23% Similarity=0.360 Sum_probs=56.7
Q ss_pred HHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy793 323 VQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ 383 (414)
Q Consensus 323 ~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~ 383 (414)
...+.++.+.|.+.+.+||++.|.+...|+|+|....+.|+++.|.+.|++.++++|.|..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 4556788999999999999999999999999999999999999999999999999998753
No 262
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.54 E-value=0.051 Score=47.06 Aligned_cols=102 Identities=14% Similarity=0.248 Sum_probs=79.4
Q ss_pred HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793 263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 342 (414)
Q Consensus 263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 342 (414)
.-..+.++|+.|++.|+++.|++.|.++...... ....+.+++++..+.+..++|..+..+..+|-.
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-------------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTS-------------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3466788999999999999999999998876221 356678889999999999999999999999976
Q ss_pred cCCC--CH--H--HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793 343 MEPN--NV--K--ALFRRGRAQVSMNNFEQGLQDYEQALDL 377 (414)
Q Consensus 343 ~~p~--~~--~--a~~~~g~~~~~lg~~~~A~~~~~~al~l 377 (414)
+-.. +. + .....|..++..++|..|...|-.+..-
T Consensus 102 ~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 102 LIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 6322 22 2 2334477788889999999888776543
No 263
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.54 E-value=0.017 Score=61.47 Aligned_cols=111 Identities=5% Similarity=-0.123 Sum_probs=74.0
Q ss_pred HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhh-------------ccCCcHHHHHhhH-----HHHHHHHHHHHHHHHHhh
Q psy793 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWY-------------NQSQSKTQQKHFR-----SYYTAALLNMAAVQLKFK 328 (414)
Q Consensus 267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~-------------~~~~~~~~~~~~~-----~~~~~~~~nla~~~~~l~ 328 (414)
+...-+.+.+.|++++|...|+...+..... ......+++.++- ......|..+..++...|
T Consensus 429 ~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g 508 (697)
T PLN03081 429 FLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHK 508 (697)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Confidence 5556666677777777777776665421100 0001111111110 112345777778888888
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 377 (414)
Q Consensus 329 ~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 377 (414)
+++.|...++++++++|++...|..++.+|...|++++|.+.++...+.
T Consensus 509 ~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 509 NLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred CcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 8888888888888888888888888888888999999998888877754
No 264
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.54 E-value=0.02 Score=43.48 Aligned_cols=68 Identities=12% Similarity=0.141 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHHH
Q psy793 333 AINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND--QQILKEIAFVRKQMRHHLN 400 (414)
Q Consensus 333 A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~--~~~~~~l~~~~~~~~~~~~ 400 (414)
.+..++++++.+|++..+.|.+|.++...|++++|++.+-.+++.+++. ..++..+-.+...++....
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~p 76 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDP 76 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-H
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCCh
Confidence 4567889999999999999999999999999999999999999998765 7788888888888777543
No 265
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.54 E-value=0.074 Score=45.64 Aligned_cols=113 Identities=12% Similarity=0.072 Sum_probs=87.6
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh-cCCCCHHHH
Q psy793 273 EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL-MEPNNVKAL 351 (414)
Q Consensus 273 ~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~-~~p~~~~a~ 351 (414)
..-++=+.+.++....+.++.. ..+.-.+.+|.++..+|++.+|...|++++. +-.+++..+
T Consensus 65 a~~q~ldP~R~~Rea~~~~~~A-----------------pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~l 127 (251)
T COG4700 65 ALQQKLDPERHLREATEELAIA-----------------PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAML 127 (251)
T ss_pred HHHHhcChhHHHHHHHHHHhhc-----------------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHH
Confidence 3334445666666666666552 2234567899999999999999999999995 467888999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHHHHH
Q psy793 352 FRRGRAQVSMNNFEQGLQDYEQALDLLPND--QQILKEIAFVRKQMRHHLNLE 402 (414)
Q Consensus 352 ~~~g~~~~~lg~~~~A~~~~~~al~l~P~~--~~~~~~l~~~~~~~~~~~~~~ 402 (414)
+.++.+++..+++..|...+++..+.+|.- +.....+++.+...++..+.+
T Consensus 128 LglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Ae 180 (251)
T COG4700 128 LGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAE 180 (251)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHH
Confidence 999999999999999999999999999864 556667777777777766544
No 266
>KOG4340|consensus
Probab=96.51 E-value=0.038 Score=50.73 Aligned_cols=120 Identities=17% Similarity=0.179 Sum_probs=77.9
Q ss_pred HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH----
Q psy793 266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL---- 341 (414)
Q Consensus 266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al---- 341 (414)
.+...|.-|+...+|..|..+|.+.-.+ .|......+--|..+.+.+.|..|+.......
T Consensus 46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql----------------~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~ 109 (459)
T KOG4340|consen 46 GLSLLGYCYYRLQEFALAAECYEQLGQL----------------HPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPA 109 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHH
Confidence 4667899999999999999999888776 34444444444444444444444443322211
Q ss_pred --------------------------hcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy793 342 --------------------------LMEP--NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK 393 (414)
Q Consensus 342 --------------------------~~~p--~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 393 (414)
+.-| +.+....+.|...++-|+|++|++-|+.|++...-++-...+++.+.-
T Consensus 110 L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy 189 (459)
T KOG4340|consen 110 LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY 189 (459)
T ss_pred HHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH
Confidence 1123 345566677777777788888888888888877777777777777766
Q ss_pred HHHHHHHH
Q psy793 394 QMRHHLNL 401 (414)
Q Consensus 394 ~~~~~~~~ 401 (414)
+.+++...
T Consensus 190 ~~~qyasA 197 (459)
T KOG4340|consen 190 SSRQYASA 197 (459)
T ss_pred hhhhHHHH
Confidence 66655544
No 267
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.51 E-value=0.2 Score=46.73 Aligned_cols=122 Identities=10% Similarity=0.045 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHHhhhHHhhhc-CHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHH
Q psy793 256 QLNQMEDVIRTIKNSGNEYFKLN-RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAI 334 (414)
Q Consensus 256 ~~~~~~~~a~~~~~~G~~~~~~~-~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~ 334 (414)
++....+.++.+++.|..+++++ +|+.|+...++|+++++.... ..............++..++.+|+..+.++...
T Consensus 27 ~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~--~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ 104 (278)
T PF08631_consen 27 DPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK--MDKLSPDGSELRLSILRLLANAYLEWDTYESVE 104 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh--ccccCCcHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 46777889999999999999999 999999999999999765210 111222234567889999999999988865443
Q ss_pred H---HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy793 335 N---LCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP 379 (414)
Q Consensus 335 ~---~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P 379 (414)
+ ..+.+-...|+.+..++-.=.++...++.+++.+.+.+.+.--+
T Consensus 105 ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 105 KALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 3 33333344566666654444444447888888888888877543
No 268
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.49 E-value=0.005 Score=35.70 Aligned_cols=33 Identities=33% Similarity=0.586 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC
Q psy793 315 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNN 347 (414)
Q Consensus 315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~ 347 (414)
.++.++|.++..++++++|+..++++++++|.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 468899999999999999999999999998853
No 269
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.044 Score=50.00 Aligned_cols=82 Identities=18% Similarity=0.260 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy793 310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA 389 (414)
Q Consensus 310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~ 389 (414)
.........|+=..++..++|+.|+.+.++.+.++|.++.-+--+|.+|.++|.+.-|+.+++..++..|+++.+.....
T Consensus 177 ~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 177 REILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence 44556777888889999999999999999999999999999999999999999999999999999999999987665444
Q ss_pred HH
Q psy793 390 FV 391 (414)
Q Consensus 390 ~~ 391 (414)
.+
T Consensus 257 ~l 258 (269)
T COG2912 257 QL 258 (269)
T ss_pred HH
Confidence 33
No 270
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.46 E-value=0.045 Score=52.14 Aligned_cols=117 Identities=16% Similarity=0.131 Sum_probs=81.9
Q ss_pred HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793 265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 344 (414)
Q Consensus 265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 344 (414)
......+..+...|++++|.+.-..++...- ++. ++ +=.-.++.+++..=++..++.++..
T Consensus 264 ~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~--------------D~~---L~--~~~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 264 ELVVAYAERLIRLGDHDEAQEIIEDALKRQW--------------DPR---LC--RLIPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhcc--------------Chh---HH--HHHhhcCCCCchHHHHHHHHHHHhC
Confidence 3345567778888999999999998887511 222 11 1122346777788888888888888
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793 345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL 401 (414)
Q Consensus 345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~ 401 (414)
|+++..++.+|..+++.+.|.+|...|+.|++..|+. +....++.+..++++..+.
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEA 380 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHH
Confidence 8888888888888888888888888888888887753 3445566666666655443
No 271
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.42 E-value=0.083 Score=56.20 Aligned_cols=135 Identities=12% Similarity=-0.006 Sum_probs=97.2
Q ss_pred HHHhhhHHhhhcCHHHHHHHHHHHHHH------------HHhhccCCcHHHHHhhHHH---------HHHHHHHHHHHHH
Q psy793 267 IKNSGNEYFKLNRMHDAQRKYKKAVRY------------IKWYNQSQSKTQQKHFRSY---------YTAALLNMAAVQL 325 (414)
Q Consensus 267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~------------~~~~~~~~~~~~~~~~~~~---------~~~~~~nla~~~~ 325 (414)
+......|.+.|++++|++.|++.++. +....+....++...+-.. ....|..+..+|.
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 556777888999999999999886642 1111111112222221111 1236777888999
Q ss_pred HhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793 326 KFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 403 (414)
Q Consensus 326 ~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 403 (414)
+.|++++|.+.+++. ...| +...|..+..++...|+++.|...+++++++.|++......+..++.+.++..+..+
T Consensus 474 r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 474 REGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred hcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence 999999999888764 2334 566788899999999999999999999999999998888888888888877766544
No 272
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.42 E-value=0.064 Score=58.80 Aligned_cols=100 Identities=12% Similarity=0.042 Sum_probs=79.8
Q ss_pred HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC
Q psy793 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN 346 (414)
Q Consensus 267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~ 346 (414)
....|..++..|++++|...+.++++..+... ......++..+|.++...|++++|...+.+++.....
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~ 523 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELPLTW-----------YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQ 523 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 34467888899999999999999998532111 2223456788999999999999999999999976332
Q ss_pred ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793 347 ------NVKALFRRGRAQVSMNNFEQGLQDYEQALDL 377 (414)
Q Consensus 347 ------~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 377 (414)
...++..+|.++...|++++|...+++++++
T Consensus 524 ~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 524 HDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred hcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1346778899999999999999999999986
No 273
>KOG2796|consensus
Probab=96.28 E-value=0.094 Score=47.43 Aligned_cols=124 Identities=12% Similarity=0.170 Sum_probs=98.3
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH--
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL-- 341 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al-- 341 (414)
-.......+.+.-.+.|.-.+..|.+.++.. .+....+...++...++.|+.+.|..+++++-
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~---------------~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~ 241 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYY---------------PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV 241 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhC---------------CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3445567788888899999999999999861 25666778889999999999999999999554
Q ss_pred --hcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793 342 --LMEP--NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE 402 (414)
Q Consensus 342 --~~~p--~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 402 (414)
.++. .+.-.+.+++.++...++|.+|...|.++++.+|.++.+.++.+.|+--+++....-
T Consensus 242 ~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAi 306 (366)
T KOG2796|consen 242 TQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDAL 306 (366)
T ss_pred HhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHH
Confidence 3332 344567778888999999999999999999999999988888888776666655443
No 274
>KOG2396|consensus
Probab=96.28 E-value=0.18 Score=49.56 Aligned_cols=95 Identities=17% Similarity=0.164 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy793 311 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNN-FEQGLQDYEQALDLLPNDQQILKEIA 389 (414)
Q Consensus 311 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~-~~~A~~~~~~al~l~P~~~~~~~~l~ 389 (414)
+.++.+|.+...-..+-+.+.+--..|.++|..+|+++..|..-|.-.+..+. .+.|.+.|.++|+++|+++.++...-
T Consensus 102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyf 181 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYF 181 (568)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHH
Confidence 33667777776666666669999999999999999999999998888777766 99999999999999999999887766
Q ss_pred HHHHHHHHHHHHHHHH
Q psy793 390 FVRKQMRHHLNLEKMT 405 (414)
Q Consensus 390 ~~~~~~~~~~~~~k~~ 405 (414)
++...--.....++..
T Consensus 182 rmEL~~~~Kl~~rr~~ 197 (568)
T KOG2396|consen 182 RMELMYAEKLRNRREE 197 (568)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6654444444444433
No 275
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.25 E-value=0.077 Score=52.23 Aligned_cols=58 Identities=12% Similarity=0.206 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHHHHHHHH
Q psy793 348 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN--DQQILKEIAFVRKQMRHHLNLEKMT 405 (414)
Q Consensus 348 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~--~~~~~~~l~~~~~~~~~~~~~~k~~ 405 (414)
..+.+++|.|..++|+.++|++.++..++..|. +..++.+|..++-.++++.+.++-.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 456688999999999999999999999998876 4678999999999998888887643
No 276
>KOG1586|consensus
Probab=96.23 E-value=0.23 Score=44.22 Aligned_cols=111 Identities=16% Similarity=0.158 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Q psy793 260 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD 339 (414)
Q Consensus 260 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 339 (414)
..+.++.+...||.|--.++|..|=..|.+|-++--... ........|...+.||-+. +..+|+.++++
T Consensus 30 ~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~----------skhDaat~YveA~~cykk~-~~~eAv~cL~~ 98 (288)
T KOG1586|consen 30 YEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAG----------SKHDAATTYVEAANCYKKV-DPEEAVNCLEK 98 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC----------CchhHHHHHHHHHHHhhcc-ChHHHHHHHHH
Confidence 344566666677777778899999999999888722111 1344566788888888766 99999999999
Q ss_pred HHhcCCC------CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC
Q psy793 340 ILLMEPN------NVKALFRRGRAQVSM-NNFEQGLQDYEQALDLLPND 381 (414)
Q Consensus 340 al~~~p~------~~~a~~~~g~~~~~l-g~~~~A~~~~~~al~l~P~~ 381 (414)
++++--+ -++-+..+|..|..- .++++|+..|++|-+...++
T Consensus 99 aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e 147 (288)
T KOG1586|consen 99 AIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE 147 (288)
T ss_pred HHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch
Confidence 9988532 234556778888754 89999999999999887554
No 277
>PLN03077 Protein ECB2; Provisional
Probab=96.22 E-value=0.038 Score=60.26 Aligned_cols=135 Identities=11% Similarity=0.024 Sum_probs=98.8
Q ss_pred HHHhhhHHhhhcCHHHHHHHHHHHHHH------------HHhhccCCcHHHHHhh-H--------HHHHHHHHHHHHHHH
Q psy793 267 IKNSGNEYFKLNRMHDAQRKYKKAVRY------------IKWYNQSQSKTQQKHF-R--------SYYTAALLNMAAVQL 325 (414)
Q Consensus 267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~------------~~~~~~~~~~~~~~~~-~--------~~~~~~~~nla~~~~ 325 (414)
+......|.+.|+.++|+..|++.++. +....+....++...+ + ......|..+..++.
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~ 636 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG 636 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 556778889999999999999887652 1111111111111111 1 112357888999999
Q ss_pred HhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793 326 KFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 403 (414)
Q Consensus 326 ~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 403 (414)
+.|++++|.+.+++. .+.| ++..|-.+-.++..-++.+.|....+++++++|++......+..++...++..+..+
T Consensus 637 r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~ 712 (857)
T PLN03077 637 RAGKLTEAYNFINKM-PITP-DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR 712 (857)
T ss_pred hCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHH
Confidence 999999999988874 3555 466777777788888999999999999999999999999999999988887766543
No 278
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.21 E-value=0.095 Score=57.87 Aligned_cols=59 Identities=14% Similarity=0.079 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy793 317 LLNMAAVQLKFKAYKRAINLCDDILLME-PNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 375 (414)
Q Consensus 317 ~~nla~~~~~l~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al 375 (414)
|..+..+|.+.+++++|++.+++.++.. +.+...|..+..+|...|++++|...|++..
T Consensus 652 ynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3344444444444444444444444332 2233444444445555555555555554443
No 279
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.19 E-value=0.042 Score=42.98 Aligned_cols=96 Identities=9% Similarity=0.107 Sum_probs=68.7
Q ss_pred hhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhh-----------CHHHHHHHHH
Q psy793 270 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-----------AYKRAINLCD 338 (414)
Q Consensus 270 ~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-----------~~~~A~~~~~ 338 (414)
++..+|++|++-+|++..+..+..-.... ....++.--|..+.++. -...|++++.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~-------------~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s 68 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDE-------------SSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFS 68 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCC-------------chHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHH
Confidence 46789999999999999999887622111 11123333344443332 2567888999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy793 339 DILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL 378 (414)
Q Consensus 339 ~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 378 (414)
++..+.|..+..+|.+|.=+-....|+++..-.+++|.+.
T Consensus 69 ~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 69 RAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 9999999998888888888777788888888888887753
No 280
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.15 E-value=0.11 Score=57.27 Aligned_cols=23 Identities=9% Similarity=-0.045 Sum_probs=13.8
Q ss_pred HhhhHHhhhcCHHHHHHHHHHHH
Q psy793 269 NSGNEYFKLNRMHDAQRKYKKAV 291 (414)
Q Consensus 269 ~~G~~~~~~~~~~~A~~~y~~Al 291 (414)
..-..|.+.|++++|+..|.+..
T Consensus 512 aLI~gy~k~G~~eeAl~lf~~M~ 534 (1060)
T PLN03218 512 ALIDGCARAGQVAKAFGAYGIMR 534 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHH
Confidence 34445666667766666665544
No 281
>KOG1915|consensus
Probab=96.15 E-value=0.091 Score=51.28 Aligned_cols=108 Identities=12% Similarity=0.185 Sum_probs=52.7
Q ss_pred hhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy793 276 KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRG 355 (414)
Q Consensus 276 ~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g 355 (414)
...+.+.+...|+.+|.+++--. -..+.+|+..|.-.+++.+...|.+.+..||.+.|.+ |.+-..-
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkk------------FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YI 444 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKK------------FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYI 444 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCccc------------chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHH
Confidence 46788899999999999865322 2333444444444444444444444444444444421 1222222
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793 356 RAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR 396 (414)
Q Consensus 356 ~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 396 (414)
..-.++++++...+.|++-|+.+|.|-.++...+.+...++
T Consensus 445 elElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lg 485 (677)
T KOG1915|consen 445 ELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLG 485 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhh
Confidence 22333444444444444444444444444444444443333
No 282
>KOG3824|consensus
Probab=96.12 E-value=0.037 Score=50.97 Aligned_cols=84 Identities=15% Similarity=0.175 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHH
Q psy793 257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL 336 (414)
Q Consensus 257 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~ 336 (414)
+....+ |....+.+....+.|+.++|...|..|+.+ .|..+.++..+|.....-++.-+|-.+
T Consensus 110 pa~~kE-A~~Al~~A~~~~~~Gk~ekA~~lfeHAlal----------------aP~~p~~L~e~G~f~E~~~~iv~ADq~ 172 (472)
T KOG3824|consen 110 PAKVKE-AILALKAAGRSRKDGKLEKAMTLFEHALAL----------------APTNPQILIEMGQFREMHNEIVEADQC 172 (472)
T ss_pred chhhHH-HHHHHHHHHHHHhccchHHHHHHHHHHHhc----------------CCCCHHHHHHHhHHHHhhhhhHhhhhh
Confidence 333433 444445566777889999999999999999 888999999999999889999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHH
Q psy793 337 CDDILLMEPNNVKALFRRGRA 357 (414)
Q Consensus 337 ~~~al~~~p~~~~a~~~~g~~ 357 (414)
|.+||.++|.|.+|+-+++..
T Consensus 173 Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 173 YVKALTISPGNSEALVNRART 193 (472)
T ss_pred hheeeeeCCCchHHHhhhhcc
Confidence 999999999999999998765
No 283
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.11 E-value=0.057 Score=50.52 Aligned_cols=116 Identities=15% Similarity=0.143 Sum_probs=85.8
Q ss_pred HHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHhcCCC
Q psy793 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK-FKAYKRAINLCDDILLMEPN 346 (414)
Q Consensus 268 ~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~A~~~~~~al~~~p~ 346 (414)
....+..-+.+..+.|...|.+|+.. ......+|...|..-.. .++.+.|...++.+++.-|.
T Consensus 5 i~~m~~~~r~~g~~~aR~vF~~a~~~----------------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~ 68 (280)
T PF05843_consen 5 IQYMRFMRRTEGIEAARKVFKRARKD----------------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC----------------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHcC----------------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence 34445555666688899999999743 33455778888888666 45666699999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHHH
Q psy793 347 NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ---QILKEIAFVRKQMRHHL 399 (414)
Q Consensus 347 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~---~~~~~l~~~~~~~~~~~ 399 (414)
+...|.....-+..+++.+.|...|++++..-|.+. .++..........++..
T Consensus 69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~ 124 (280)
T PF05843_consen 69 DPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLE 124 (280)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999887765 56666666555555433
No 284
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.84 E-value=0.082 Score=38.54 Aligned_cols=69 Identities=17% Similarity=0.255 Sum_probs=56.0
Q ss_pred HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 341 (414)
Q Consensus 262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 341 (414)
..+....+.|..++.+.+..+|+..+++||+.... .+....++--++.+|...|+|++++.+.-.=+
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~-------------~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITD-------------REDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777889999999999999999999999987432 34456677778889999999999998876555
Q ss_pred hc
Q psy793 342 LM 343 (414)
Q Consensus 342 ~~ 343 (414)
.+
T Consensus 71 ~~ 72 (80)
T PF10579_consen 71 EI 72 (80)
T ss_pred HH
Confidence 43
No 285
>KOG1915|consensus
Probab=95.70 E-value=0.18 Score=49.22 Aligned_cols=93 Identities=16% Similarity=0.205 Sum_probs=83.1
Q ss_pred hhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy793 275 FKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRR 354 (414)
Q Consensus 275 ~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~ 354 (414)
..++++..|...|.+||.. +...+++|...+.+-++.+....|....++|+.+-|.-.+.||..
T Consensus 84 esq~e~~RARSv~ERALdv----------------d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY 147 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDV----------------DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKY 147 (677)
T ss_pred HhHHHHHHHHHHHHHHHhc----------------ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHH
Confidence 3456677777777777776 778889999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy793 355 GRAQVSMNNFEQGLQDYEQALDLLPNDQQ 383 (414)
Q Consensus 355 g~~~~~lg~~~~A~~~~~~al~l~P~~~~ 383 (414)
-..-..+|+...|...|++=++..|+...
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~w~P~eqa 176 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWMEWEPDEQA 176 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHcCCCcHHH
Confidence 99999999999999999999999997543
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.42 E-value=0.91 Score=38.22 Aligned_cols=114 Identities=10% Similarity=0.005 Sum_probs=87.2
Q ss_pred HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 341 (414)
Q Consensus 262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 341 (414)
+.+..+.+......+.++.+++...+...-.+ .|....+-.--|+.++..++|.+|+..++.+.
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL----------------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL----------------RPEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh----------------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34667888888888888998887777554444 67788888889999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy793 342 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK 393 (414)
Q Consensus 342 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 393 (414)
.-.|..+.+---++.|++.++|.+-=. +-+.+++-.+ |+.+......+..
T Consensus 72 ~~~~~~p~~kALlA~CL~~~~D~~Wr~-~A~evle~~~-d~~a~~Lv~~Ll~ 121 (160)
T PF09613_consen 72 ERAPGFPYAKALLALCLYALGDPSWRR-YADEVLESGA-DPDARALVRALLA 121 (160)
T ss_pred ccCCCChHHHHHHHHHHHHcCChHHHH-HHHHHHhcCC-ChHHHHHHHHHHH
Confidence 999988877778899999999986533 2344555544 5666655555543
No 287
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.33 E-value=0.028 Score=49.67 Aligned_cols=61 Identities=13% Similarity=0.232 Sum_probs=56.4
Q ss_pred hHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCH
Q psy793 272 NEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNV 348 (414)
Q Consensus 272 ~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~ 348 (414)
....+.++.+.|.+.|.+|+.+ .|.+..-|+.++....+.|+++.|...+++.|+++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~l----------------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALEL----------------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhc----------------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3567789999999999999999 888999999999999999999999999999999999764
No 288
>PLN03077 Protein ECB2; Provisional
Probab=95.25 E-value=0.21 Score=54.50 Aligned_cols=84 Identities=10% Similarity=0.039 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------------
Q psy793 314 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL---------------- 377 (414)
Q Consensus 314 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l---------------- 377 (414)
..+|..+-.++..-++.+.|....+++++++|+++..|..++.+|...|+|++|.+..+...+.
T Consensus 657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~ 736 (857)
T PLN03077 657 PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGK 736 (857)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCE
Confidence 4456666666677889999999999999999999999999999999999999999998887653
Q ss_pred ----------CCCCHHHHHHHHHHHHHHHH
Q psy793 378 ----------LPNDQQILKEIAFVRKQMRH 397 (414)
Q Consensus 378 ----------~P~~~~~~~~l~~~~~~~~~ 397 (414)
.|...++...+..+..++++
T Consensus 737 ~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 766 (857)
T PLN03077 737 VHAFLTDDESHPQIKEINTVLEGFYEKMKA 766 (857)
T ss_pred EEEEecCCCCCcchHHHHHHHHHHHHHHHh
Confidence 24446677777766666653
No 289
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=95.24 E-value=0.025 Score=55.35 Aligned_cols=62 Identities=19% Similarity=0.278 Sum_probs=42.8
Q ss_pred ccCCcCCCCcccccccccceeeeccCCCCCCccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhc
Q psy793 136 IYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSY 203 (414)
Q Consensus 136 ~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~ 203 (414)
..|...+.|++.-+ .+|++++-+.| . ..-..||-..+-| -.-.|+|+|+|+.||++++--..
T Consensus 242 L~g~~~p~En~~~R--~rGtVTVRn~G-~--G~G~VYIYredr~-ss~sHtvVG~V~~GiELid~a~~ 303 (503)
T TIGR03268 242 LRGLDKPEENIEKR--RRGAVTVRNSG-V--GEGRVYIYREDRP-SSLSHNVVGHVTRGIELIDIAQE 303 (503)
T ss_pred ccCccCCccccCcc--cceeEEEEeec-c--CceeEEEEcCCCC-CCcccceeEEEecceeeeecccC
Confidence 33566677766543 48999998877 2 2345777776544 12369999999999998865444
No 290
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.23 E-value=0.19 Score=46.45 Aligned_cols=73 Identities=15% Similarity=0.233 Sum_probs=67.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793 305 QQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 377 (414)
Q Consensus 305 ~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 377 (414)
+...+......++..++..+...++++.++...++.+.++|-+..+|.++=.+|+..|+...|+..|++..++
T Consensus 144 ~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 144 QRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3344467888999999999999999999999999999999999999999999999999999999999998874
No 291
>KOG2471|consensus
Probab=95.21 E-value=0.034 Score=54.24 Aligned_cols=95 Identities=13% Similarity=0.040 Sum_probs=72.0
Q ss_pred HHHhhhHHhhhcCHHHHHHHHHHHHHHH-HhhccCCcHH-HHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYI-KWYNQSQSKT-QQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 344 (414)
Q Consensus 267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~-~~~~~~~~~~-~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 344 (414)
..+.|-..|+.+.|..++.+|.+||+-. .......+.. ...-.......+++|.|..|+..|+...|.+++.++...-
T Consensus 286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf 365 (696)
T KOG2471|consen 286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF 365 (696)
T ss_pred ecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence 4578999999999999999999999721 1111110100 0111122345789999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHc
Q psy793 345 PNNVKALFRRGRAQVSM 361 (414)
Q Consensus 345 p~~~~a~~~~g~~~~~l 361 (414)
-.|+..|.|+|.|+..-
T Consensus 366 h~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 366 HRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcCcHHHHHHHHHHHHH
Confidence 99999999999998753
No 292
>PRK00969 hypothetical protein; Provisional
Probab=95.21 E-value=0.025 Score=55.59 Aligned_cols=62 Identities=19% Similarity=0.295 Sum_probs=43.0
Q ss_pred ccCCcCCCCcccccccccceeeeccCCCCCCccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhc
Q psy793 136 IYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSY 203 (414)
Q Consensus 136 ~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~ 203 (414)
..|...+.|++.-+ .+|+|++-+.| . ..-..||-..+-| -.-.|+|+|+|+.|+++++--..
T Consensus 245 L~g~~~p~En~~~R--~~GtVTVRt~G-~--g~G~vYIyredr~-ss~sHtvVG~V~~GiELi~~a~~ 306 (508)
T PRK00969 245 LQGLKIPEENFEPR--RRGTVTVRTAG-V--GVGKVYIYREDRP-SSLSHTVVGRVTHGIELIDFAKE 306 (508)
T ss_pred ccCccCCccccCcc--ccceEEEEeec-c--CceeEEEECCCCC-CCccceeEEEEecceeeeecccC
Confidence 34566777766543 48999998877 3 2345777776644 12369999999999998865444
No 293
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.21 E-value=0.15 Score=55.07 Aligned_cols=123 Identities=7% Similarity=0.045 Sum_probs=90.9
Q ss_pred HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhh-------CHHHHHHHHHH
Q psy793 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-------AYKRAINLCDD 339 (414)
Q Consensus 267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-------~~~~A~~~~~~ 339 (414)
+....+.++..+.|++|+..|++.-.-.+-.. .--++.+..|.+.+..- .+.+|+.-+++
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRK-------------EGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSY 544 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcc-------------cchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 34456778888999999999988876643222 22345556666655432 46666666665
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793 340 ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 403 (414)
Q Consensus 340 al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 403 (414)
... .|.-+--|..+|.+|..+++|++-+++|..|++..|+.+.+-.....+-.++.+..-+.+
T Consensus 545 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (932)
T PRK13184 545 LHG-GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHR 607 (932)
T ss_pred hcC-CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 543 355677789999999999999999999999999999999998888888877777655443
No 294
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=95.15 E-value=0.25 Score=35.89 Aligned_cols=64 Identities=16% Similarity=0.122 Sum_probs=42.4
Q ss_pred HHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHH
Q psy793 261 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQ 324 (414)
Q Consensus 261 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~ 324 (414)
.+.|..+..++..+=+.|++.+|+.+|++|++++-......+.......-...+.=|.+++..+
T Consensus 3 ~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~L 66 (75)
T cd02682 3 EEMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVL 66 (75)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence 3457788899999999999999999999999987554433332222222233334444444443
No 295
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.10 E-value=0.37 Score=46.26 Aligned_cols=115 Identities=15% Similarity=0.143 Sum_probs=82.3
Q ss_pred HHHHhhhHHhhhcCHHHHHHHHHHHHH-HHHhhccCCc-----------------HHHHHhhHHHHHHHHHHHHHHHHHh
Q psy793 266 TIKNSGNEYFKLNRMHDAQRKYKKAVR-YIKWYNQSQS-----------------KTQQKHFRSYYTAALLNMAAVQLKF 327 (414)
Q Consensus 266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~-~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~nla~~~~~l 327 (414)
...+.+..+.++|+..+|+......+. .+........ .............++.-+|.-...+
T Consensus 186 v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~ 265 (352)
T PF02259_consen 186 VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL 265 (352)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence 345566777777788888888888887 3332211000 0012222455667888888887778
Q ss_pred ------hCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHhhCCC
Q psy793 328 ------KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNF-----------------EQGLQDYEQALDLLPN 380 (414)
Q Consensus 328 ------~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~-----------------~~A~~~~~~al~l~P~ 380 (414)
+..++++..|.+|++++|.+.++|+..|..+..+=+. ..|+..|-+|+.+.+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 266 YSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred ccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 8899999999999999999999999999887765222 3488888899988877
No 296
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.99 E-value=0.048 Score=34.24 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 315 AALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
.++.|+|.+|..+|+|++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45566667777777777777666666654
No 297
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.96 E-value=0.33 Score=48.95 Aligned_cols=89 Identities=8% Similarity=-0.010 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy793 310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN----VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL 385 (414)
Q Consensus 310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~----~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~ 385 (414)
-|...-.++..|..+...|+.++|++.+++++...... .-+++-+|.++..+.+|++|..+|.+.++.+.-.+...
T Consensus 263 yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y 342 (468)
T PF10300_consen 263 YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFY 342 (468)
T ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHH
Confidence 46666778899999999999999999999999544332 34788999999999999999999999999775544433
Q ss_pred -HHHHHHHHHHHHH
Q psy793 386 -KEIAFVRKQMRHH 398 (414)
Q Consensus 386 -~~l~~~~~~~~~~ 398 (414)
+..+.|+..+.+.
T Consensus 343 ~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 343 AYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHHhhccc
Confidence 3334444444433
No 298
>KOG3081|consensus
Probab=94.93 E-value=0.27 Score=44.60 Aligned_cols=74 Identities=14% Similarity=0.090 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCCCCHHH
Q psy793 311 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ-DYEQALDLLPNDQQI 384 (414)
Q Consensus 311 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~-~~~~al~l~P~~~~~ 384 (414)
+....+....|.|++.+++|++|...++.||.-+++++..+-++-.+-..+|.-.++.. .+.+....+|+.+-+
T Consensus 204 ~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 204 PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 34456788899999999999999999999999999999999999999999998877665 445555566766543
No 299
>KOG1070|consensus
Probab=94.82 E-value=0.35 Score=53.20 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy793 313 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN--NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAF 390 (414)
Q Consensus 313 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~--~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~ 390 (414)
...+|...+..+++..+-++|...+.+||+.-|. ..+..-..|+.-++.|+-+.+...|+-.+.-+|.-.+.|..+..
T Consensus 1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence 4567888888888888888888888888888777 56677777888888888888888888888888887777766554
Q ss_pred HHH
Q psy793 391 VRK 393 (414)
Q Consensus 391 ~~~ 393 (414)
...
T Consensus 1643 ~ei 1645 (1710)
T KOG1070|consen 1643 MEI 1645 (1710)
T ss_pred HHH
Confidence 433
No 300
>KOG4507|consensus
Probab=94.79 E-value=0.089 Score=52.56 Aligned_cols=129 Identities=16% Similarity=0.158 Sum_probs=98.4
Q ss_pred HHhhhHHh-hhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC
Q psy793 268 KNSGNEYF-KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN 346 (414)
Q Consensus 268 ~~~G~~~~-~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~ 346 (414)
...+..|. .+|+..+|+.||..|+-..+. ...-.+++.+|.++.++|.-.+|--.+..|+.-.|.
T Consensus 216 H~~as~YWR~~G~~~~A~~Ca~~a~hf~~~--------------h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~ 281 (886)
T KOG4507|consen 216 HNMASFYWRIKGEPYQAVECAMRALHFSSR--------------HNKDIALLSLATVLHRAGFSADAAVILHAALDDADF 281 (886)
T ss_pred HHHHHHHHHHcCChhhhhHHHHHHhhhCCc--------------ccccchhhhHHHHHHHcccccchhheeehhccCCcc
Confidence 34444444 478999999999999988442 223356788999999999999998888888888777
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy793 347 NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI---LKEIAFVRKQMRHHLNLEKMTYARMF 410 (414)
Q Consensus 347 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~---~~~l~~~~~~~~~~~~~~k~~~~~~f 410 (414)
-...+|-++.++..+++|-.....|..+.+..|.-... ....-.|+.++.+..+|+++..+.|.
T Consensus 282 ~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~kleKq~~~l~~~~ 348 (886)
T KOG4507|consen 282 FTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQKLEKQHRSLQRTL 348 (886)
T ss_pred ccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77789999999999999999999999999999875332 23344455666666666665555543
No 301
>PRK10941 hypothetical protein; Provisional
Probab=94.72 E-value=0.21 Score=46.21 Aligned_cols=78 Identities=8% Similarity=0.051 Sum_probs=68.5
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
.+.+.+.=..+.+.++|+.|+.+-+..+.+ .|..+.-+..+|.+|.+++.+..|+.+++.-++.
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l----------------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQF----------------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 555667778899999999999999999999 7777788889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHH
Q psy793 344 EPNNVKALFRRGRA 357 (414)
Q Consensus 344 ~p~~~~a~~~~g~~ 357 (414)
.|+.+.+-.-+.+.
T Consensus 245 ~P~dp~a~~ik~ql 258 (269)
T PRK10941 245 CPEDPISEMIRAQI 258 (269)
T ss_pred CCCchhHHHHHHHH
Confidence 99998876555443
No 302
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.70 E-value=0.52 Score=39.65 Aligned_cols=89 Identities=12% Similarity=0.124 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793 312 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV 391 (414)
Q Consensus 312 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 391 (414)
.-+..+..+..+-++.++.+++...+.-.--+.|..+..-..-|..+...|+|.+|+..|+.+.+-.|..+.+...++.|
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 34566778888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy793 392 RKQMRHHLN 400 (414)
Q Consensus 392 ~~~~~~~~~ 400 (414)
+..+++...
T Consensus 88 L~~~~D~~W 96 (160)
T PF09613_consen 88 LYALGDPSW 96 (160)
T ss_pred HHHcCChHH
Confidence 877766544
No 303
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.67 E-value=0.86 Score=42.60 Aligned_cols=104 Identities=12% Similarity=0.084 Sum_probs=77.6
Q ss_pred HHHhhhHHhh-hcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCC
Q psy793 267 IKNSGNEYFK-LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP 345 (414)
Q Consensus 267 ~~~~G~~~~~-~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p 345 (414)
+...|..-+. .++.+.|...|+.++.. -+....+|......+.++++.+.|...+++++..-+
T Consensus 38 y~~~A~~E~~~~~d~~~A~~Ife~glk~----------------f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~ 101 (280)
T PF05843_consen 38 YVAYALMEYYCNKDPKRARKIFERGLKK----------------FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLP 101 (280)
T ss_dssp HHHHHHHHHHTCS-HHHHHHHHHHHHHH----------------HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcC
Confidence 4445555455 56777799999999998 555667777777888999999999999999998866
Q ss_pred CCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy793 346 NNV---KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 386 (414)
Q Consensus 346 ~~~---~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~ 386 (414)
... ..|-+...--...|+.+...+..+++.++.|++..+..
T Consensus 102 ~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 102 KEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 544 35666666677779999999999999999988655443
No 304
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.027 Score=53.08 Aligned_cols=61 Identities=21% Similarity=0.325 Sum_probs=41.1
Q ss_pred cCCcCCCCcccccccccceeeeccCCCCCCccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhc
Q psy793 137 YGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSY 203 (414)
Q Consensus 137 ~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~ 203 (414)
.+..++.|+++++. +|.+++-|.| -++ -..||--.+-|. .-.|.|.|+|++||++++-...
T Consensus 245 q~~~~~~en~d~Re--rG~iTvRn~G-vge--GrvYIyRedR~s-s~sHnvVGrV~eGiELid~a~e 305 (512)
T COG4070 245 QEEKVPEENFDLRE--RGAITVRNVG-VGE--GRVYIYREDRPS-SLSHNVVGRVIEGIELIDLAEE 305 (512)
T ss_pred ccccCChhhhhhhh--cceEEEEeee-ccc--ceEEEEecCCCC-ccccceeeeeecceEEEEeccc
Confidence 35566777777654 8999998876 333 356666654331 1368999999999988765443
No 305
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.58 E-value=0.36 Score=38.25 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=56.4
Q ss_pred HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
+--+...+...|+|++++..-.+||.+++...... +....+++.+-+++|.++..+|..++|+..++.+-++
T Consensus 58 hA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~-----qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 58 HAGLSGALAGLGRYDECLQSADRALRYFNRRGELH-----QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT-----STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-----cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 44466778889999999999999999988766332 2234577889999999999999999999999998765
No 306
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.54 E-value=0.2 Score=38.28 Aligned_cols=65 Identities=23% Similarity=0.334 Sum_probs=45.4
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793 273 EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 344 (414)
Q Consensus 273 ~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 344 (414)
...+.++|..|++.+.+..+.......... ......+..++|.++...|++++|+..+++|+++-
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~-------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSS-------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchh-------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 345679999999999999988433221000 12344567778888888888888888888888764
No 307
>KOG4814|consensus
Probab=94.54 E-value=0.88 Score=46.24 Aligned_cols=77 Identities=13% Similarity=0.080 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy793 315 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNN------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 388 (414)
Q Consensus 315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l 388 (414)
.++.|-|.-++++++|..+++.|...+..-|.+ +|..-.++.||..+.+.+.|.+.++.|-+.+|.++-.+..+
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 577899999999999999999999999776544 67888899999999999999999999999999987655554
Q ss_pred HHH
Q psy793 389 AFV 391 (414)
Q Consensus 389 ~~~ 391 (414)
..+
T Consensus 435 ~~~ 437 (872)
T KOG4814|consen 435 LQS 437 (872)
T ss_pred HHH
Confidence 433
No 308
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=94.52 E-value=0.38 Score=47.12 Aligned_cols=122 Identities=9% Similarity=0.159 Sum_probs=68.7
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhC-------HHHHHHH
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA-------YKRAINL 336 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~-------~~~A~~~ 336 (414)
.....+.|..++..|+|.+|+..|+.+|..+.-...... ++..+.......+.-.+-.+.+.+.+ .++....
T Consensus 204 L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~-~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~ 282 (422)
T PF06957_consen 204 LEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESR-EEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRN 282 (422)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHH
Confidence 444666899999999999999999999998776654333 33333333333332222222222221 1222222
Q ss_pred HHHH-----HhcCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy793 337 CDDI-----LLMEPNNVKALFRRGRA-QVSMNNFEQGLQDYEQALDLLPNDQQILK 386 (414)
Q Consensus 337 ~~~a-----l~~~p~~~~a~~~~g~~-~~~lg~~~~A~~~~~~al~l~P~~~~~~~ 386 (414)
++-| .++.|.+-..-+|.|.. .++.++|.-|....++.|++.|..+.+.+
T Consensus 283 lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~q 338 (422)
T PF06957_consen 283 LELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQ 338 (422)
T ss_dssp HHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHH
Confidence 2222 23445444444555554 45779999999999999999998765443
No 309
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.42 E-value=0.097 Score=32.78 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy793 348 VKALFRRGRAQVSMNNFEQGLQDYEQALDLL 378 (414)
Q Consensus 348 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 378 (414)
+.++.++|.+|..+|++++|+..+++++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 3578899999999999999999999998763
No 310
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=94.31 E-value=0.28 Score=45.04 Aligned_cols=72 Identities=15% Similarity=0.193 Sum_probs=62.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy793 305 QQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD 376 (414)
Q Consensus 305 ~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~ 376 (414)
+...+...+..++...|..|++.+.+.+|++.+++++.++|=+...+.-+-..+..+||--.|++.|++.-+
T Consensus 270 ererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 270 ERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344446677788888899999999999999999999999999999999999999999998888888877543
No 311
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.23 E-value=0.74 Score=44.16 Aligned_cols=128 Identities=13% Similarity=0.071 Sum_probs=98.3
Q ss_pred HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 341 (414)
Q Consensus 262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 341 (414)
+.+..+...+..+.+.|.++.|.....++........ .....+.+..|..+...|+-.+|+..++..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~------------~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~ 211 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSE------------SLLPRVFLEYAKLLWAQGEQEEAIQKLRELL 211 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCccc------------CCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567788899999999999999999988887521111 1144566677778888888888988888777
Q ss_pred hc--CC--------------------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCC
Q psy793 342 LM--EP--------------------------------NNVKALFRRGRAQVSM------NNFEQGLQDYEQALDLLPND 381 (414)
Q Consensus 342 ~~--~p--------------------------------~~~~a~~~~g~~~~~l------g~~~~A~~~~~~al~l~P~~ 381 (414)
.. .. ..+++++.+|.-...+ +..++++..|+.|.+++|+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 291 (352)
T PF02259_consen 212 KCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW 291 (352)
T ss_pred HHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH
Confidence 61 10 1146788888888888 89999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy793 382 QQILKEIAFVRKQMRHHLNL 401 (414)
Q Consensus 382 ~~~~~~l~~~~~~~~~~~~~ 401 (414)
..++..++.....+-+....
T Consensus 292 ~k~~~~~a~~~~~~~~~~~~ 311 (352)
T PF02259_consen 292 EKAWHSWALFNDKLLESDPR 311 (352)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 99999988888877666553
No 312
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=94.13 E-value=0.57 Score=33.44 Aligned_cols=37 Identities=19% Similarity=0.169 Sum_probs=31.7
Q ss_pred HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhc
Q psy793 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYN 298 (414)
Q Consensus 262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~ 298 (414)
+.+..+...|..+=+.|+|++|+.+|.+|++.+....
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 39 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQAL 39 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 4567788889999999999999999999999876544
No 313
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.02 E-value=0.57 Score=35.77 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=46.5
Q ss_pred HHHHhhCHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy793 323 VQLKFKAYKRAINLCDDILLMEPN---------NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP 379 (414)
Q Consensus 323 ~~~~l~~~~~A~~~~~~al~~~p~---------~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P 379 (414)
-.++.++|.+|++.+.+.+..... ...++.++|.++...|++++|+..++.|+++..
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 346789999998888888755321 246788999999999999999999999999853
No 314
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.96 E-value=0.11 Score=32.34 Aligned_cols=29 Identities=34% Similarity=0.580 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793 349 KALFRRGRAQVSMNNFEQGLQDYEQALDL 377 (414)
Q Consensus 349 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l 377 (414)
..|.++|.+-...++|+.|+.+|++|+++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46778888888888888888888888875
No 315
>KOG2300|consensus
Probab=93.80 E-value=2.6 Score=41.68 Aligned_cols=99 Identities=16% Similarity=0.159 Sum_probs=75.2
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
+....-.|.-...-+.|+.|..+|..|++..+. .....-+-.|+|..|+..++-+.-.+..+ .+
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~-------------~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i 430 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTES-------------IDLQAFCNLNLAISYLRIGDAEDLYKALD---LI 430 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH-------------HHHHHHHHHhHHHHHHHhccHHHHHHHHH---hc
Confidence 444556787788889999999999999988432 34567788999999999776544322222 33
Q ss_pred CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy793 344 EPNN----------VKALFRRGRAQVSMNNFEQGLQDYEQALDLL 378 (414)
Q Consensus 344 ~p~~----------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 378 (414)
.|.| ..++|-.|.-.+.++++.+|...+++.++..
T Consensus 431 ~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 431 GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 4443 3578889999999999999999999999987
No 316
>KOG3617|consensus
Probab=93.73 E-value=1.2 Score=46.57 Aligned_cols=64 Identities=17% Similarity=0.154 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHH----------HhcCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy793 314 TAALLNMAAVQLKFKAYKRAINLCDDI----------LLMEPNN----------VKALFRRGRAQVSMNNFEQGLQDYEQ 373 (414)
Q Consensus 314 ~~~~~nla~~~~~l~~~~~A~~~~~~a----------l~~~p~~----------~~a~~~~g~~~~~lg~~~~A~~~~~~ 373 (414)
-..|+|.|.-+..-++.+.|+++|+++ |.-+|.. .+.|-..|+-+...|+.+.|+..|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 356888888888899999999999886 2334433 44555668888999999999999999
Q ss_pred HHhh
Q psy793 374 ALDL 377 (414)
Q Consensus 374 al~l 377 (414)
|...
T Consensus 938 A~D~ 941 (1416)
T KOG3617|consen 938 AKDY 941 (1416)
T ss_pred hhhh
Confidence 8763
No 317
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=93.71 E-value=0.72 Score=33.82 Aligned_cols=62 Identities=10% Similarity=0.083 Sum_probs=41.4
Q ss_pred HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHH
Q psy793 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAV 323 (414)
Q Consensus 262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~ 323 (414)
..+..+..+|..+=+.|+|++|+.+|.+||+.+-........+.....-...+.-|.++|..
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~ 65 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEA 65 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34667888899999999999999999999999765443333333333333334445555443
No 318
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.68 E-value=3.1 Score=38.77 Aligned_cols=106 Identities=14% Similarity=0.145 Sum_probs=75.7
Q ss_pred HhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHhc----CC---
Q psy793 274 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-AYKRAINLCDDILLM----EP--- 345 (414)
Q Consensus 274 ~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~A~~~~~~al~~----~p--- 345 (414)
..++|+++.|..+|.|+-.+.+... ..........++|.|...++.+ +++.|+..+++|+++ .+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~--------~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~ 74 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLD--------PDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDK 74 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCC--------cHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccc
Confidence 4678999999999999998753111 1113455788999999999999 999999999999877 21
Q ss_pred CC-------HHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhCCCCHHHHHH
Q psy793 346 NN-------VKALFRRGRAQVSMNNFEQ---GLQDYEQALDLLPNDQQILKE 387 (414)
Q Consensus 346 ~~-------~~a~~~~g~~~~~lg~~~~---A~~~~~~al~l~P~~~~~~~~ 387 (414)
.. ...+..++.+|...+.++. |...++.+-.-.|+.+.....
T Consensus 75 ~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L 126 (278)
T PF08631_consen 75 LSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLL 126 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 11 3466778999998887654 444444444455776666633
No 319
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.62 E-value=3.4 Score=35.97 Aligned_cols=135 Identities=13% Similarity=0.198 Sum_probs=86.2
Q ss_pred hhhHHhhhcCHH---HHHHHHHHHHHHHHhhccCCcHHHHHhhHHH------HHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy793 270 SGNEYFKLNRMH---DAQRKYKKAVRYIKWYNQSQSKTQQKHFRSY------YTAALLNMAAVQLKFKAYKRAINLCDDI 340 (414)
Q Consensus 270 ~G~~~~~~~~~~---~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~------~~~~~~nla~~~~~l~~~~~A~~~~~~a 340 (414)
.|-.|+...+.+ +|-..|.+++..+..-.. ........+... -.-.-+.+|..+...+++++|+..++.+
T Consensus 37 fGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~ 115 (207)
T COG2976 37 FGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQA 115 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 466777666555 788899999988753332 222222222222 2234567788899999999999999999
Q ss_pred HhcCCCC-H--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy793 341 LLMEPNN-V--KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ-QILKEIAFVRKQMRHHLNLEKMTYAR 408 (414)
Q Consensus 341 l~~~p~~-~--~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~-~~~~~l~~~~~~~~~~~~~~k~~~~~ 408 (414)
+....+. - -+-.|+|.++..++.+++|++.+..... ++.. ......+.++..+++..+. |+.|++
T Consensus 116 l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~kg~k~~A-r~ay~k 184 (207)
T COG2976 116 LAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILLAKGDKQEA-RAAYEK 184 (207)
T ss_pred HccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHHcCchHHH-HHHHHH
Confidence 9765443 2 3567999999999999999988875422 1112 2234445555555554443 334443
No 320
>KOG2610|consensus
Probab=93.54 E-value=0.43 Score=44.78 Aligned_cols=64 Identities=13% Similarity=-0.004 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy793 310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ 373 (414)
Q Consensus 310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~ 373 (414)
.|.++-+.--.|.++...|-|++|.+..++++++++.+..+...++-++...+++.++.+...+
T Consensus 171 lp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 171 LPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred CcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 4566667777889999999999999999999999999988888888888888887777766554
No 321
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.49 E-value=0.83 Score=34.63 Aligned_cols=56 Identities=13% Similarity=-0.020 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHH
Q psy793 310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN--VKALFRRGRAQVSMNNFE 365 (414)
Q Consensus 310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~--~~a~~~~g~~~~~lg~~~ 365 (414)
+|.+..+.+.+|.+++..|++++|++.+-.+++.++++ ..+.-.+-.++..+|.-+
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 88899999999999999999999999999999999876 344444444454455433
No 322
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.47 E-value=6.6 Score=38.63 Aligned_cols=71 Identities=15% Similarity=0.234 Sum_probs=56.0
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHH
Q psy793 319 NMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND----QQILKEIAFVRK 393 (414)
Q Consensus 319 nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~----~~~~~~l~~~~~ 393 (414)
.=|..++..|+|.+|..++.=..+++| ++.+|--+|.|++...+|++|..++.+ +.|++ ..+++.+..|+.
T Consensus 467 aDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lCqK 541 (549)
T PF07079_consen 467 ADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALCQK 541 (549)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHHHH
Confidence 345567789999999999999999999 999999999999999999999988774 45543 234444444443
No 323
>KOG3364|consensus
Probab=93.46 E-value=0.56 Score=38.11 Aligned_cols=42 Identities=29% Similarity=0.411 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy793 312 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFR 353 (414)
Q Consensus 312 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~ 353 (414)
..-.+.+.+|..+.++++|+.++.+++..|+.+|+|..|.--
T Consensus 69 ~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 69 RRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred cchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 344677889999999999999999999999999999877543
No 324
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=93.45 E-value=0.27 Score=30.16 Aligned_cols=33 Identities=9% Similarity=0.118 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCCC
Q psy793 349 KALFRRGRAQVSMNNFEQGLQD--YEQALDLLPND 381 (414)
Q Consensus 349 ~a~~~~g~~~~~lg~~~~A~~~--~~~al~l~P~~ 381 (414)
+.++.+|-.+..+|++++|+.. |+-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4567777777778888888887 44777776654
No 325
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.19 E-value=3.5 Score=39.70 Aligned_cols=97 Identities=10% Similarity=0.016 Sum_probs=75.4
Q ss_pred HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793 265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 344 (414)
Q Consensus 265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 344 (414)
.++...+...+-.|+|+.|.+.|+.-+.- -....--+..|-.--.++|.++.|+.+.+++-...
T Consensus 121 LIhlLeAQaal~eG~~~~Ar~kfeAMl~d----------------PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A 184 (531)
T COG3898 121 LIHLLEAQAALLEGDYEDARKKFEAMLDD----------------PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA 184 (531)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHhcC----------------hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc
Confidence 34555677778889999999999877753 12222223333344457899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793 345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 377 (414)
Q Consensus 345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 377 (414)
|.-++++...-......|+|+.|++..+...+.
T Consensus 185 p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 185 PQLPWAARATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 999999988888899999999999998876654
No 326
>KOG2053|consensus
Probab=93.14 E-value=0.81 Score=48.20 Aligned_cols=114 Identities=13% Similarity=0.128 Sum_probs=82.8
Q ss_pred HhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCH
Q psy793 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNV 348 (414)
Q Consensus 269 ~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~ 348 (414)
-.|-.+++.|.+++|..+. +++... .+.+...+.-+-.||..++++++|...|++++..+|. .
T Consensus 48 LkaLsl~r~gk~~ea~~~L-e~~~~~---------------~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-e 110 (932)
T KOG2053|consen 48 LKALSLFRLGKGDEALKLL-EALYGL---------------KGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-E 110 (932)
T ss_pred HHHHHHHHhcCchhHHHHH-hhhccC---------------CCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-H
Confidence 3677888889988888443 333221 2224445666778999999999999999999999998 8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHHHHHH
Q psy793 349 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ-ILKEIAFVRKQMRHHL 399 (414)
Q Consensus 349 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~-~~~~l~~~~~~~~~~~ 399 (414)
+.++.+=.||.+-+.|.+-.+.--+..+.-|.++. .|..+..+.+.+...+
T Consensus 111 ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~ 162 (932)
T KOG2053|consen 111 ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSEN 162 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCc
Confidence 89999999999999997766655556667788764 4555555555444433
No 327
>KOG1310|consensus
Probab=92.83 E-value=0.53 Score=46.72 Aligned_cols=77 Identities=21% Similarity=0.157 Sum_probs=68.9
Q ss_pred HHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793 325 LKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSM---NNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL 401 (414)
Q Consensus 325 ~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l---g~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~ 401 (414)
+....+..|+..|.++++..|.....|.++|.++++. |+--.|+.+...|++++|....++..|.+++..+.+..+.
T Consensus 385 ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 385 LYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEA 464 (758)
T ss_pred hhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHh
Confidence 3355678899999999999999999999999998876 6778899999999999999999999999999999988775
No 328
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=92.78 E-value=1.2 Score=43.27 Aligned_cols=107 Identities=21% Similarity=0.187 Sum_probs=79.7
Q ss_pred cCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc--------------
Q psy793 278 NRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM-------------- 343 (414)
Q Consensus 278 ~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~-------------- 343 (414)
..|.++...|..++...+... ........|..+..+..++.++..+|++..|.+.+++||-.
T Consensus 8 ~~Y~~~q~~F~~~v~~~Dp~~----l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~ 83 (360)
T PF04910_consen 8 KAYQEAQEQFYAAVQSHDPNA----LINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRS 83 (360)
T ss_pred HHHHHHHHHHHHHHHccCHHH----HHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 456777777777776521111 12222346788999999999999999999999999999721
Q ss_pred C------------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHH
Q psy793 344 E------------PNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN-DQQILKEI 388 (414)
Q Consensus 344 ~------------p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-~~~~~~~l 388 (414)
+ +.| -.++++....+.+.|.+.-|++..+-.+.++|. |+-....+
T Consensus 84 ~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ 144 (360)
T PF04910_consen 84 NLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLF 144 (360)
T ss_pred ccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHH
Confidence 1 112 358889999999999999999999999999999 76544333
No 329
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=92.74 E-value=3.1 Score=38.88 Aligned_cols=107 Identities=17% Similarity=0.165 Sum_probs=79.2
Q ss_pred HHHHHhhhHHhh----hcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHH-HHHHHHHHHHHHHh-----h--CHHH
Q psy793 265 RTIKNSGNEYFK----LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYY-TAALLNMAAVQLKF-----K--AYKR 332 (414)
Q Consensus 265 ~~~~~~G~~~~~----~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~~~l-----~--~~~~ 332 (414)
..+.+.|..++. ..++.+|...|.+|... .... ..+.++++.+|..- - +...
T Consensus 110 ~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~----------------g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~ 173 (292)
T COG0790 110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAKL----------------GNVEAALAMYRLGLAYLSGLQALAVAYDDKK 173 (292)
T ss_pred HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc----------------CChhHHHHHHHHHHHHHcChhhhcccHHHHh
Confidence 345667777766 55999999999999987 1111 34466777777664 1 2347
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793 333 AINLCDDILLMEPNNVKALFRRGRAQVS----MNNFEQGLQDYEQALDLLPNDQQILKEIAFV 391 (414)
Q Consensus 333 A~~~~~~al~~~p~~~~a~~~~g~~~~~----lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 391 (414)
|+..+.++.... ++.+.+++|.+|.. ..++++|...|++|.+... ..+...+..+
T Consensus 174 A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~~~ 232 (292)
T COG0790 174 ALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLGLM 232 (292)
T ss_pred HHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHHHH
Confidence 999999988876 88899999988864 3589999999999999886 6666666633
No 330
>KOG1070|consensus
Probab=92.63 E-value=2.9 Score=46.50 Aligned_cols=82 Identities=16% Similarity=0.099 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHH
Q psy793 315 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN--DQQILKEIAFVR 392 (414)
Q Consensus 315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~--~~~~~~~l~~~~ 392 (414)
.+|..|+-.|.+-+++++|.+.++.-++--....+.|...|..++..++-++|...+++||+.-|. +.+.....+.+.
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 567778888888999999999999888777677889999999999999999999999999999998 444555555544
Q ss_pred HHHH
Q psy793 393 KQMR 396 (414)
Q Consensus 393 ~~~~ 396 (414)
-+.+
T Consensus 1611 Fk~G 1614 (1710)
T KOG1070|consen 1611 FKYG 1614 (1710)
T ss_pred hhcC
Confidence 4333
No 331
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=92.49 E-value=0.49 Score=46.67 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=20.3
Q ss_pred eEEEEEcCCcchhhHHHHHHhh
Q psy793 26 RMVIELFKHIVPKTAENFRALC 47 (414)
Q Consensus 26 ~i~ieL~~~~aP~~~~nF~~l~ 47 (414)
-|.|+||.|.||+|+.-|+++.
T Consensus 376 vi~IeLydd~AP~s~~yFRk~t 397 (503)
T TIGR03268 376 VIEIELYDDNAPRSVWYFRKFT 397 (503)
T ss_pred EEEEEEcccCCchHHHHHHHhc
Confidence 4899999999999999999876
No 332
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.36 E-value=0.28 Score=45.48 Aligned_cols=81 Identities=19% Similarity=0.125 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy793 311 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFR-RGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA 389 (414)
Q Consensus 311 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~-~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~ 389 (414)
+.++.+|...+..-.+.+.|.+.-..|.++|+.+|.|+..|.. -+--+...++++.|.+.|.++++++|.++.+|...-
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 4567788888888888889999999999999999999998876 444577789999999999999999999998876554
Q ss_pred HH
Q psy793 390 FV 391 (414)
Q Consensus 390 ~~ 391 (414)
+.
T Consensus 184 r~ 185 (435)
T COG5191 184 RM 185 (435)
T ss_pred HH
Confidence 43
No 333
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=92.30 E-value=1.5 Score=35.01 Aligned_cols=116 Identities=13% Similarity=0.118 Sum_probs=73.9
Q ss_pred HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH----Hh
Q psy793 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI----LL 342 (414)
Q Consensus 267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a----l~ 342 (414)
+...|+..++.+++-.|+-+|++|+.+.+..... .+.+..++-...+...-|+|.-+..+|+-+=.++|++-| +.
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~-~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDES-NEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccc-ccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999997655321 122333333455666789999999999999998887655 55
Q ss_pred cCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy793 343 MEPNNVKALFRRGRA-QVSMNNFEQGLQDYEQALDLLPNDQQILKEIAF 390 (414)
Q Consensus 343 ~~p~~~~a~~~~g~~-~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~ 390 (414)
+-|..++.- ..+ .-.+|--..|+-+| ++..| |+.+.+.+..
T Consensus 83 LiPQCp~~~---C~afi~sLGCCk~ALl~F---~KRHP-NP~iA~~vq~ 124 (140)
T PF10952_consen 83 LIPQCPNTE---CEAFIDSLGCCKKALLDF---MKRHP-NPEIARLVQH 124 (140)
T ss_pred hccCCCCcc---hHHHHHhhhccHHHHHHH---HHhCC-CHHHHHHHHh
Confidence 556543211 111 11234444455444 34555 4555555543
No 334
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=92.27 E-value=2.7 Score=32.99 Aligned_cols=85 Identities=13% Similarity=0.121 Sum_probs=64.1
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCHHHH
Q psy793 320 MAAVQLKFKAYKRAINLCDDILLMEPNNVK---ALFRRGRAQVSMNN-----------FEQGLQDYEQALDLLPNDQQIL 385 (414)
Q Consensus 320 la~~~~~l~~~~~A~~~~~~al~~~p~~~~---a~~~~g~~~~~lg~-----------~~~A~~~~~~al~l~P~~~~~~ 385 (414)
+|.-+++.|++-+|++..+..+...+++.. .+...|.+++.+.. .-.|+.+|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 567789999999999999999999877663 45556777766643 3578999999999999987777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy793 386 KEIAFVRKQMRHHLNLEKM 404 (414)
Q Consensus 386 ~~l~~~~~~~~~~~~~~k~ 404 (414)
..++.-......+++.-++
T Consensus 82 ~~la~~l~s~~~Ykk~v~k 100 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKK 100 (111)
T ss_pred HHHHHHhhhHHHHHHHHHH
Confidence 7776665555555554443
No 335
>KOG2047|consensus
Probab=92.02 E-value=8.2 Score=39.66 Aligned_cols=124 Identities=15% Similarity=0.174 Sum_probs=87.8
Q ss_pred HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 341 (414)
Q Consensus 262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 341 (414)
+....+...+...-.-|-++.....|.+.|++ .-..+.+-.|.|..+.....|++|.+.|++-+
T Consensus 475 rSlkiWs~y~DleEs~gtfestk~vYdriidL----------------riaTPqii~NyAmfLEeh~yfeesFk~YErgI 538 (835)
T KOG2047|consen 475 RSLKIWSMYADLEESLGTFESTKAVYDRIIDL----------------RIATPQIIINYAMFLEEHKYFEESFKAYERGI 538 (835)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH----------------hcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCC
Confidence 33444445555555667888888889998888 44455667888999888999999999999999
Q ss_pred hcCCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793 342 LMEPN-NV----KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 403 (414)
Q Consensus 342 ~~~p~-~~----~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 403 (414)
.+-+. +. ..|+-.....+.--..+.|...|++||+..| +..-+.+-.++.++.+.....|
T Consensus 539 ~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp--p~~aKtiyLlYA~lEEe~GLar 603 (835)
T KOG2047|consen 539 SLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP--PEHAKTIYLLYAKLEEEHGLAR 603 (835)
T ss_pred ccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhhHHH
Confidence 88542 22 2456667777777889999999999999988 4444444444454444443333
No 336
>KOG0686|consensus
Probab=91.86 E-value=1.2 Score=42.89 Aligned_cols=112 Identities=16% Similarity=0.246 Sum_probs=83.6
Q ss_pred HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793 265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 344 (414)
Q Consensus 265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 344 (414)
..+.+.|..|..-|++..|+++|.++=.+... ...-+..+.|+-.+-..+++|..-..+..+|.+.-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-------------~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~ 217 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTS-------------AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTP 217 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-------------hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCc
Confidence 34666899999999999999999996665322 23446778888889999999999999888887662
Q ss_pred --------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------hCCCCHHHHHHHH
Q psy793 345 --------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALD--------LLPNDQQILKEIA 389 (414)
Q Consensus 345 --------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~--------l~P~~~~~~~~l~ 389 (414)
.-.++....-|.+...+++|..|.+.|-.+.- +.|.|..+.-.+.
T Consensus 218 ~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLc 278 (466)
T KOG0686|consen 218 DANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLC 278 (466)
T ss_pred hhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhH
Confidence 11346777888899999999999998876643 2355655554443
No 337
>PRK00969 hypothetical protein; Provisional
Probab=91.81 E-value=0.51 Score=46.65 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.4
Q ss_pred eEEEEEcCCcchhhHHHHHHhh
Q psy793 26 RMVIELFKHIVPKTAENFRALC 47 (414)
Q Consensus 26 ~i~ieL~~~~aP~~~~nF~~l~ 47 (414)
-|.|+||.+.||+|+.-|+++.
T Consensus 379 vi~IeLydd~AP~s~~yFR~~t 400 (508)
T PRK00969 379 LIEIELYDDKAPRTVWYFRKVT 400 (508)
T ss_pred EEEEEEcCcCCchHHHHHHHhc
Confidence 4899999999999999999876
No 338
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.76 E-value=8.9 Score=40.13 Aligned_cols=110 Identities=15% Similarity=0.105 Sum_probs=85.1
Q ss_pred HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhc-c--C---Cc----HHHHHhhHHHHHHHHHHHHHHHHHhhCHHH
Q psy793 263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYN-Q--S---QS----KTQQKHFRSYYTAALLNMAAVQLKFKAYKR 332 (414)
Q Consensus 263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~-~--~---~~----~~~~~~~~~~~~~~~~nla~~~~~l~~~~~ 332 (414)
.+..+.-.|..++..+..+.|.+++.++++.++... . . .+ .+...-.......++..++.+.+-+++|..
T Consensus 300 ~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~ 379 (608)
T PF10345_consen 300 YALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSK 379 (608)
T ss_pred HHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHH
Confidence 355666678888888988899999999999987655 1 1 11 222333345566778888999999999999
Q ss_pred HHHHHHHHHhcC---C------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy793 333 AINLCDDILLME---P------NNVKALFRRGRAQVSMNNFEQGLQDYE 372 (414)
Q Consensus 333 A~~~~~~al~~~---p------~~~~a~~~~g~~~~~lg~~~~A~~~~~ 372 (414)
|....+.+.... | ..+..+|-.|..+...|+.+.|+..|.
T Consensus 380 a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 380 ATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 999888777553 2 247789999999999999999999998
No 339
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.71 E-value=7.3 Score=37.14 Aligned_cols=82 Identities=15% Similarity=0.138 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHhhC------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793 310 RSYYTAALLNMAAVQLKFKA------------YKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 377 (414)
Q Consensus 310 ~~~~~~~~~nla~~~~~l~~------------~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 377 (414)
+|.++.+|..+....-++-. .+.-+..+++||+.+|++.+.+..+=.+...+.+-++..+-+++++..
T Consensus 15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 66777777777665544422 456678899999999999999998888888999999999999999999
Q ss_pred CCCCHHHHHHHHHH
Q psy793 378 LPNDQQILKEIAFV 391 (414)
Q Consensus 378 ~P~~~~~~~~l~~~ 391 (414)
+|++..++..+-..
T Consensus 95 ~~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 95 NPGSPELWREYLDF 108 (321)
T ss_pred CCCChHHHHHHHHH
Confidence 99998887655444
No 340
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.54 E-value=0.29 Score=30.47 Aligned_cols=30 Identities=13% Similarity=0.233 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793 315 AALLNMAAVQLKFKAYKRAINLCDDILLME 344 (414)
Q Consensus 315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 344 (414)
.+|..+|.+.+..++|++|+.+++++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 468889999999999999999999999874
No 341
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=91.42 E-value=2.5 Score=40.98 Aligned_cols=56 Identities=11% Similarity=0.071 Sum_probs=51.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy793 352 FRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYA 407 (414)
Q Consensus 352 ~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~ 407 (414)
-.+..||..+++.+.|+..-.+.+-++|....-+...+.+.+.+.++.+..|..+-
T Consensus 232 tklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSami 287 (569)
T PF15015_consen 232 TKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMI 287 (569)
T ss_pred HHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999998876653
No 342
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.41 E-value=2.1 Score=41.49 Aligned_cols=82 Identities=13% Similarity=0.192 Sum_probs=56.2
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC-C------------c-HHHHHhhHHHHHHHHHHHHHHHHHhhC
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-Q------------S-KTQQKHFRSYYTAALLNMAAVQLKFKA 329 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~-~------------~-~~~~~~~~~~~~~~~~nla~~~~~l~~ 329 (414)
+..+...+..+..+|+++.|.+..++||=.++..-+. . . .-...+ +.....+.+.....+.+-|.
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~e-NR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPE-NRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCcccc-chHHHHHHHHHHHHHHhcCc
Confidence 4557778888888888888888888888665422210 0 0 001111 22233566667788889999
Q ss_pred HHHHHHHHHHHHhcCCC
Q psy793 330 YKRAINLCDDILLMEPN 346 (414)
Q Consensus 330 ~~~A~~~~~~al~~~p~ 346 (414)
|+.|++.|+-.+.+||.
T Consensus 119 ~rTAlE~~KlLlsLdp~ 135 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPD 135 (360)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999999999998
No 343
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=91.33 E-value=0.8 Score=42.39 Aligned_cols=62 Identities=8% Similarity=-0.021 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy793 333 AINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ 394 (414)
Q Consensus 333 A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 394 (414)
|..+|.+|+.+.|.+...|..+|..+...++.-.|+-.|-+++-..-..+.+..+|..+..+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999998765568889999888877
No 344
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=91.32 E-value=2.7 Score=30.69 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHh
Q psy793 261 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKW 296 (414)
Q Consensus 261 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~ 296 (414)
.+.|..+...|..+=+.|+|++|+.+|..|++++-.
T Consensus 3 e~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 3 ERDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 345777888999999999999999999999998643
No 345
>KOG1550|consensus
Probab=91.30 E-value=2.1 Score=44.26 Aligned_cols=102 Identities=16% Similarity=0.118 Sum_probs=78.1
Q ss_pred HhhhHHhhhc-----CHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhh---CHHHHHHHHHHH
Q psy793 269 NSGNEYFKLN-----RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK---AYKRAINLCDDI 340 (414)
Q Consensus 269 ~~G~~~~~~~-----~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~---~~~~A~~~~~~a 340 (414)
..|..|.+.. ++..|+..|.+|-+. ....+.+++|.||..-. ++..|.+++..|
T Consensus 293 ~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~------------------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~A 354 (552)
T KOG1550|consen 293 GLGRLYLQGLGVEKIDYEKALKLYTKAAEL------------------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLA 354 (552)
T ss_pred HHHHHHhcCCCCccccHHHHHHHHHHHHhc------------------CCchHHHHHHHHHHcCCccccHHHHHHHHHHH
Confidence 4677777632 778899999998866 34567788889888766 678999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy793 341 LLMEPNNVKALFRRGRAQVSM----NNFEQGLQDYEQALDLLPNDQQILKEIAFVR 392 (414)
Q Consensus 341 l~~~p~~~~a~~~~g~~~~~l----g~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 392 (414)
... .+..|.|++|.||..= .+.+.|..+|+++.+.+ ++.+...+..+.
T Consensus 355 a~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~ 406 (552)
T KOG1550|consen 355 AKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFY 406 (552)
T ss_pred HHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHH
Confidence 876 4788999999998742 57899999999999998 444444444443
No 346
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=91.28 E-value=2.1 Score=31.10 Aligned_cols=38 Identities=16% Similarity=0.105 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhc
Q psy793 261 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYN 298 (414)
Q Consensus 261 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~ 298 (414)
.+.+..+..+|...=..|+|++|+.+|.+|++.+-...
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~ 40 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHAL 40 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 34577788889999999999999999999999875444
No 347
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.23 E-value=2.9 Score=34.74 Aligned_cols=81 Identities=12% Similarity=0.096 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793 317 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR 396 (414)
Q Consensus 317 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 396 (414)
+..+..+-+...+.+++...++..--+.|+.+.....-|..+...|+|++|+..|+...+-.+..+.....++.|+..++
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 33444444445555555555555555556555555555556666666666666666555555555555555555555444
Q ss_pred H
Q psy793 397 H 397 (414)
Q Consensus 397 ~ 397 (414)
+
T Consensus 93 D 93 (153)
T TIGR02561 93 D 93 (153)
T ss_pred C
Confidence 3
No 348
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=90.81 E-value=3.2 Score=30.06 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=30.6
Q ss_pred HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhc
Q psy793 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYN 298 (414)
Q Consensus 262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~ 298 (414)
+.+..+...|...=..|+|++|+.+|..|++.+-...
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~ 40 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQAL 40 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 4566677788888889999999999999999876544
No 349
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=90.79 E-value=3 Score=30.39 Aligned_cols=61 Identities=15% Similarity=0.033 Sum_probs=40.6
Q ss_pred HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHH
Q psy793 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAA 322 (414)
Q Consensus 262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~ 322 (414)
..+-.+..+|...=+.|+|++|+.+|..+|+.+-.....+..+.....-...+.-|+.+|.
T Consensus 4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~RAE 64 (75)
T cd02677 4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLKRAE 64 (75)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888899999999999999999976655443333333333333444444443
No 350
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=90.71 E-value=2 Score=31.33 Aligned_cols=37 Identities=11% Similarity=-0.050 Sum_probs=31.2
Q ss_pred HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhc
Q psy793 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYN 298 (414)
Q Consensus 262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~ 298 (414)
+.+..+..+|...=..|+|++|+.+|..||+.+-...
T Consensus 4 ~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~ 40 (75)
T cd02684 4 EKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPAL 40 (75)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 4566778888999999999999999999999876544
No 351
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=90.70 E-value=4.6 Score=39.17 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy793 348 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAF 390 (414)
Q Consensus 348 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~ 390 (414)
.+.+-.++.+..-.+++++|+..+++++++.|..-.....+..
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~n 347 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLEN 347 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHH
Confidence 3444556777888899999999999999999887554444333
No 352
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.61 E-value=0.39 Score=26.94 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q psy793 349 KALFRRGRAQVSMNNFEQGLQDYE 372 (414)
Q Consensus 349 ~a~~~~g~~~~~lg~~~~A~~~~~ 372 (414)
.+++.+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355666666777777776666554
No 353
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=90.54 E-value=3.3 Score=30.15 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhc
Q psy793 261 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYN 298 (414)
Q Consensus 261 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~ 298 (414)
...|..+...|..+=..|++++|+.+|.+|++.+-...
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~ 42 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLEGI 42 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 34567788888888899999999999999999876544
No 354
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.49 E-value=1 Score=29.00 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=18.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q psy793 352 FRRGRAQVSMNNFEQGLQDYEQALD 376 (414)
Q Consensus 352 ~~~g~~~~~lg~~~~A~~~~~~al~ 376 (414)
+.+|.+|..+|+++.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5677777778888888777777774
No 355
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=90.48 E-value=5.6 Score=38.39 Aligned_cols=105 Identities=15% Similarity=0.009 Sum_probs=72.5
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHH
Q psy793 273 EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALF 352 (414)
Q Consensus 273 ~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~ 352 (414)
..+..|+|+.|++..+......- .+....+.....++.-.+...+ ..+...|..+..+++++.|+..-+-.
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~v--------ie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav 267 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKV--------IEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAV 267 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHh--------hchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHH
Confidence 45677888888888766655411 0011112222333333333332 34588899999999999999999988
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy793 353 RRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387 (414)
Q Consensus 353 ~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~ 387 (414)
--+.+++..|+..++-..++.+-+..|+ +.+...
T Consensus 268 ~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~l 301 (531)
T COG3898 268 VAARALFRDGNLRKGSKILETAWKAEPH-PDIALL 301 (531)
T ss_pred HHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHH
Confidence 8999999999999999999999999885 444333
No 356
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=90.28 E-value=4.1 Score=41.25 Aligned_cols=106 Identities=18% Similarity=0.094 Sum_probs=79.1
Q ss_pred hhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHH-HHHHHHHhcCCCCH
Q psy793 270 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAI-NLCDDILLMEPNNV 348 (414)
Q Consensus 270 ~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~-~~~~~al~~~p~~~ 348 (414)
....+...++...|......++.. ++....++.|++.+....+..-.++ ..+..+....|++.
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~----------------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~ 136 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSV----------------NPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNA 136 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhc----------------CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchH
Confidence 344445555666666666666666 7888889999999988877655554 45555888999988
Q ss_pred HHHHHH------HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793 349 KALFRR------GRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV 391 (414)
Q Consensus 349 ~a~~~~------g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 391 (414)
.....+ +.....+++..++....+++.++.|.++.+...+.-.
T Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 137 EFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 766665 8888888999999999999999999987766655544
No 357
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.28 E-value=2.6 Score=39.11 Aligned_cols=83 Identities=14% Similarity=0.091 Sum_probs=64.0
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--------------------------
Q psy793 320 MAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ-------------------------- 373 (414)
Q Consensus 320 la~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~-------------------------- 373 (414)
-+.-....+++.+|...+..++...|.+..+...++.||...|+.+.|...+..
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 344556789999999999999999999999999999999999999777665543
Q ss_pred --------HHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793 374 --------ALDLLPNDQQILKEIAFVRKQMRHHLNLE 402 (414)
Q Consensus 374 --------al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 402 (414)
.+..+|+|.++...++..+...++.++.-
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Al 256 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAAL 256 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 11245777777777777766666665543
No 358
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.16 E-value=8.1 Score=32.14 Aligned_cols=87 Identities=11% Similarity=-0.017 Sum_probs=67.0
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
+..+.+.........+.+++..... |++.+ .|....+-.--++.++..++|.+|+..++.+.+-
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLd-ALrvL---------------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLD-ALRVL---------------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH-HHHHh---------------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 4445555555555777777765553 44442 5677777788899999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHH
Q psy793 344 EPNNVKALFRRGRAQVSMNNFEQ 366 (414)
Q Consensus 344 ~p~~~~a~~~~g~~~~~lg~~~~ 366 (414)
.+..+.+---++.|++.+||.+-
T Consensus 74 ~~~~p~~kAL~A~CL~al~Dp~W 96 (153)
T TIGR02561 74 AGAPPYGKALLALCLNAKGDAEW 96 (153)
T ss_pred CCCchHHHHHHHHHHHhcCChHH
Confidence 88888777788999999999764
No 359
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=90.03 E-value=1.6 Score=42.61 Aligned_cols=134 Identities=14% Similarity=0.114 Sum_probs=75.3
Q ss_pred hhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHH
Q psy793 270 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVK 349 (414)
Q Consensus 270 ~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~ 349 (414)
+-..+.-.|||..|++...- ... ..........+-.+..++.+|.||+.+++|.+|+..+..+|-.-...-.
T Consensus 128 LlRvh~LLGDY~~Alk~l~~-------idl-~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~ 199 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLEN-------IDL-NKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKN 199 (404)
T ss_pred HHHHHHhccCHHHHHHHhhc-------cCc-ccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45566677888888765421 111 0111122223556788999999999999999999999999843211111
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhc
Q psy793 350 ALFRRGRAQV-SMNNFEQGLQDYEQALDLLPN--DQQILKEIAFVRKQMRHHLN-LEKMTYARMFQ 411 (414)
Q Consensus 350 a~~~~g~~~~-~lg~~~~A~~~~~~al~l~P~--~~~~~~~l~~~~~~~~~~~~-~~k~~~~~~f~ 411 (414)
.+..+.--+- -.+..|+....+--|+.+.|. +..+...+..-+...-..-+ -.-..|..+|.
T Consensus 200 ~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~ 265 (404)
T PF10255_consen 200 QYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFS 265 (404)
T ss_pred hhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 1111111111 124556667777777788886 56665555444332222211 13345666665
No 360
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=89.84 E-value=1.9 Score=38.44 Aligned_cols=92 Identities=11% Similarity=0.044 Sum_probs=58.0
Q ss_pred HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 341 (414)
Q Consensus 262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 341 (414)
..|..+...+..|-..++-+.....+++|+......-..+. .....-....+.+-+|..+.++|++++|+.++.+++
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~---~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENED---FPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCc---CCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45666667777777777766666666666655432221111 000011234578889999999999999999999999
Q ss_pred hcCCCCH-HHHHHHHH
Q psy793 342 LMEPNNV-KALFRRGR 356 (414)
Q Consensus 342 ~~~p~~~-~a~~~~g~ 356 (414)
.....+. ..+..+|.
T Consensus 193 ~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 193 GSKKASKEPKLKDMAR 208 (214)
T ss_pred cCCCCCCcHHHHHHHH
Confidence 8754333 34455554
No 361
>KOG1550|consensus
Probab=89.83 E-value=2.7 Score=43.40 Aligned_cols=113 Identities=15% Similarity=0.117 Sum_probs=81.8
Q ss_pred HHHhhhHHh-----hhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhh-----CHHHHHHH
Q psy793 267 IKNSGNEYF-----KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-----AYKRAINL 336 (414)
Q Consensus 267 ~~~~G~~~~-----~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-----~~~~A~~~ 336 (414)
....|..++ ..++.+.|+.+|..|..-+.... ......+.+.+|.||.+.. ++..|+.+
T Consensus 247 ~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a-----------~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~ 315 (552)
T KOG1550|consen 247 QYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA-----------TKGLPPAQYGLGRLYLQGLGVEKIDYEKALKL 315 (552)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH-----------hhcCCccccHHHHHHhcCCCCccccHHHHHHH
Confidence 334455444 34699999999999987211100 1124457888999999843 78889999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy793 337 CDDILLMEPNNVKALFRRGRAQVSMN---NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ 394 (414)
Q Consensus 337 ~~~al~~~p~~~~a~~~~g~~~~~lg---~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 394 (414)
+.++-++. ++.+.|.+|.++..-. ++..|..+|..|.+.- +..+...++.++..
T Consensus 316 ~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 316 YTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYEL 372 (552)
T ss_pred HHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHh
Confidence 99998885 6788999999998765 6789999999998753 56666777766543
No 362
>KOG0530|consensus
Probab=88.98 E-value=18 Score=33.12 Aligned_cols=108 Identities=12% Similarity=0.098 Sum_probs=87.0
Q ss_pred hhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy793 276 KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF-KAYKRAINLCDDILLMEPNNVKALFRR 354 (414)
Q Consensus 276 ~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-~~~~~A~~~~~~al~~~p~~~~a~~~~ 354 (414)
+...-..|+..-..+|++ .|..-++|.-+=.|+..+ .+..+-+++++++++-+|.|...|..+
T Consensus 55 ~~E~S~RAl~LT~d~i~l----------------NpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHR 118 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRL----------------NPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHR 118 (318)
T ss_pred ccccCHHHHHHHHHHHHh----------------CcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHH
Confidence 344556788888888877 777777777776666654 457788899999999999999999999
Q ss_pred HHHHHHcCCHH-HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q psy793 355 GRAQVSMNNFE-QGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL 399 (414)
Q Consensus 355 g~~~~~lg~~~-~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~ 399 (414)
-.+...+|+.. .-+...+.++..+..|-.++....-+.+..+...
T Consensus 119 r~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~ 164 (318)
T KOG0530|consen 119 RVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYE 164 (318)
T ss_pred HHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHH
Confidence 89999999888 7888999999999888888888888877766643
No 363
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.78 E-value=1.4 Score=27.03 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhhCHHHHHHH--HHHHHhcCCCC
Q psy793 315 AALLNMAAVQLKFKAYKRAINL--CDDILLMEPNN 347 (414)
Q Consensus 315 ~~~~nla~~~~~l~~~~~A~~~--~~~al~~~p~~ 347 (414)
..++.+|.++...|+|++|+.. +.-+..+++.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 3567889999999999999999 55888887754
No 364
>KOG0292|consensus
Probab=88.63 E-value=7.9 Score=41.15 Aligned_cols=130 Identities=8% Similarity=0.100 Sum_probs=79.3
Q ss_pred HHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHH-----hh--CHHHH
Q psy793 261 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK-----FK--AYKRA 333 (414)
Q Consensus 261 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-----l~--~~~~A 333 (414)
+.......+.|..+...|+|.+|+++|+.+|-.++-...+..++. .+.+.....+...+....+. ++ ....+
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~-aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~ 1066 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEE-AEADELIKICREYIVGLSVELERRKLKKPNLEQQ 1066 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhH-HHHHHHHHHHHHHHhhheeeeeecccCCchHHHH
Confidence 455677788999999999999999999999977654443333222 22222222221222222111 11 23333
Q ss_pred --HHHHHHHHhcCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793 334 --INLCDDILLMEPNNVKALFRRG-RAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV 391 (414)
Q Consensus 334 --~~~~~~al~~~p~~~~a~~~~g-~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 391 (414)
+..|=.-..+.|...-.-.+.| .++++++++..|....++.+++.|..+.+......+
T Consensus 1067 ~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~ 1127 (1202)
T KOG0292|consen 1067 LELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIK 1127 (1202)
T ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 2222233455565444334444 468899999999999999999999887766554443
No 365
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.58 E-value=4.9 Score=35.68 Aligned_cols=71 Identities=17% Similarity=0.136 Sum_probs=59.6
Q ss_pred HHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy793 322 AVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVR 392 (414)
Q Consensus 322 ~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 392 (414)
.-+++.+...+|+.....-++-+|.+......+-+.+.-.|+|++|...++-+-++.|++..-...+..+.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li 79 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI 79 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 35667888999999999999999999988888888899999999999999999999999865444444433
No 366
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=88.46 E-value=2.3 Score=35.19 Aligned_cols=51 Identities=10% Similarity=0.156 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q psy793 348 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 398 (414)
Q Consensus 348 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~ 398 (414)
......++...+..|+|..|......++..+|+|..++..++.++.+++.+
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 334445555555555555555555555555555555555555555555444
No 367
>KOG0529|consensus
Probab=88.40 E-value=6.8 Score=38.01 Aligned_cols=107 Identities=13% Similarity=0.130 Sum_probs=82.8
Q ss_pred HhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhC--HHHHHHHHHHHHhcCCCCHHHH
Q psy793 274 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA--YKRAINLCDDILLMEPNNVKAL 351 (414)
Q Consensus 274 ~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~--~~~A~~~~~~al~~~p~~~~a~ 351 (414)
..++...++-+..-..||.. .|..-.+|.-+.+++.+... |..-++.|+++|+.||.|-.+|
T Consensus 85 ~ek~~~ld~eL~~~~~~L~~----------------npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W 148 (421)
T KOG0529|consen 85 LEKQALLDEELKYVESALKV----------------NPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAW 148 (421)
T ss_pred HHHHHhhHHHHHHHHHHHHh----------------CchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccch
Confidence 33444566667777777777 78888999999999987653 7899999999999999998876
Q ss_pred -HHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793 352 -FRRGRAQVSMNN---FEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR 396 (414)
Q Consensus 352 -~~~g~~~~~lg~---~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 396 (414)
||+=.+-..... ..+-+....+++.-++.|-.++.....+...+-
T Consensus 149 ~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~ 197 (421)
T KOG0529|consen 149 HYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLH 197 (421)
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhc
Confidence 455444444444 677788899999999999999988888877443
No 368
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.36 E-value=13 Score=39.02 Aligned_cols=120 Identities=12% Similarity=0.118 Sum_probs=85.9
Q ss_pred HHHHHHHhhhHHh-hhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793 263 VIRTIKNSGNEYF-KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 341 (414)
Q Consensus 263 ~a~~~~~~G~~~~-~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 341 (414)
.+......|..++ ...+++.|..+..+++.+... ..+......+.+-++.++.+.+... |+..++++|
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~----------~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I 126 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCER----------HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAI 126 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc----------cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHH
Confidence 4777888888888 677999999999999988433 2234455666677788988888777 999999999
Q ss_pred hcCCC---C-HHHHHHHHHHHH--HcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHH
Q psy793 342 LMEPN---N-VKALFRRGRAQV--SMNNFEQGLQDYEQALDLL--PNDQQILKEIAFVRK 393 (414)
Q Consensus 342 ~~~p~---~-~~a~~~~g~~~~--~lg~~~~A~~~~~~al~l~--P~~~~~~~~l~~~~~ 393 (414)
+.-.. . ..-.|++-.+.. ..+++..|+..+++...+. ++++.+...+..+..
T Consensus 127 ~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~ 186 (608)
T PF10345_consen 127 EDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEA 186 (608)
T ss_pred HHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Confidence 77544 2 333445543322 2379999999999999887 566665554444433
No 369
>KOG2561|consensus
Probab=88.32 E-value=6.9 Score=38.25 Aligned_cols=111 Identities=11% Similarity=0.070 Sum_probs=74.4
Q ss_pred HHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCH----------
Q psy793 261 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY---------- 330 (414)
Q Consensus 261 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~---------- 330 (414)
.-.+..+.+.|..+++...|.+|+.+.-.|=+++.... ....+...+++.+-..+-|||+.+++.
T Consensus 160 lmmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd-----~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL 234 (568)
T KOG2561|consen 160 LMMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCD-----SKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRL 234 (568)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhh-----HHHHHhhcchhhhhcchhheehhhcccccCChHHHHH
Confidence 34567789999999999999999999887776643222 233333455666777788999998862
Q ss_pred HHHHHHHHHHH--------hcC-CCCH-HHHH-----HHHHHHHHcCCHHHHHHHHHHHHh
Q psy793 331 KRAINLCDDIL--------LME-PNNV-KALF-----RRGRAQVSMNNFEQGLQDYEQALD 376 (414)
Q Consensus 331 ~~A~~~~~~al--------~~~-p~~~-~a~~-----~~g~~~~~lg~~~~A~~~~~~al~ 376 (414)
..|.+.+.++. .+. +..+ +|++ --|...+++|+-++|..+++.|..
T Consensus 235 ~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 235 VRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 22333333222 111 2222 3333 348999999999999999998875
No 370
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=87.39 E-value=19 Score=34.93 Aligned_cols=86 Identities=15% Similarity=0.095 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhhCCCCHHH
Q psy793 313 YTAALLNMAAVQLKFKAYKRAINLCDDILLM----EPNNVKALFRRGRAQVS---MNNFEQGLQDYEQ-ALDLLPNDQQI 384 (414)
Q Consensus 313 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~----~p~~~~a~~~~g~~~~~---lg~~~~A~~~~~~-al~l~P~~~~~ 384 (414)
...+..|+-.+|....+|+.-+...+..-.+ -++.....+..|.|+-+ .|+.++|+..+.. .....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3456678889999999999999988887766 45566677788888888 8999999999999 44556778999
Q ss_pred HHHHHHHHHHHHHH
Q psy793 385 LKEIAFVRKQMRHH 398 (414)
Q Consensus 385 ~~~l~~~~~~~~~~ 398 (414)
.-.++.++..+-..
T Consensus 220 ~gL~GRIyKD~~~~ 233 (374)
T PF13281_consen 220 LGLLGRIYKDLFLE 233 (374)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887554
No 371
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=87.37 E-value=1.2 Score=42.43 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.8
Q ss_pred eEEEEEcCCcchhhHHHHHHhhh
Q psy793 26 RMVIELFKHIVPKTAENFRALCT 48 (414)
Q Consensus 26 ~i~ieL~~~~aP~~~~nF~~l~~ 48 (414)
-|+||||.|.||+++.-|.++..
T Consensus 377 iieIELyed~APrSv~yFRr~t~ 399 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTG 399 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhcc
Confidence 48999999999999999998873
No 372
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=86.92 E-value=5.4 Score=36.47 Aligned_cols=64 Identities=16% Similarity=0.228 Sum_probs=40.3
Q ss_pred HHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 341 (414)
Q Consensus 268 ~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 341 (414)
...|..|++.|+|++|+..|+.+........ =......++..+..|+.++++.+..+..+-+.+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg----------W~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREG----------WWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC----------cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3567777777777777777777754422110 023445666677777777777777777665554
No 373
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=86.53 E-value=7 Score=39.65 Aligned_cols=72 Identities=17% Similarity=0.051 Sum_probs=62.1
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCCCCHHHHHHHHHH
Q psy793 320 MAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ-ALDLLPNDQQILKEIAFV 391 (414)
Q Consensus 320 la~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~-al~l~P~~~~~~~~l~~~ 391 (414)
++..+..++....+......++..+|++..++.++|.++...+....++..+.. +....|.+......+-.+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 145 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRF 145 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHH
Confidence 688888899998999999999999999999999999999988887777766666 999999998888877333
No 374
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=86.53 E-value=9.1 Score=27.81 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=19.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH-------HHhhCCCCHHHHHHHHHH
Q psy793 352 FRRGRAQVSMNNFEQGLQDYEQ-------ALDLLPNDQQILKEIAFV 391 (414)
Q Consensus 352 ~~~g~~~~~lg~~~~A~~~~~~-------al~l~P~~~~~~~~l~~~ 391 (414)
..+|.-+-..|++++|+.+|++ ++...|+++.......++
T Consensus 10 a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki 56 (75)
T cd02682 10 AINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMI 56 (75)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 3444444444554444444444 444567766544433333
No 375
>KOG3617|consensus
Probab=86.46 E-value=8.4 Score=40.79 Aligned_cols=64 Identities=8% Similarity=0.026 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhc---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy793 315 AALLNMAAVQLKFKAYKRAINLCDDILLM---------------------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQ 373 (414)
Q Consensus 315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~---------------------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~ 373 (414)
.+|.--|..+...|+.+.|+.+|..|-.. ...+-.|-|.+|.-|...|++.+|+..|.+
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45566677778889999999988887532 234566889999999999999999999988
Q ss_pred HHhhC
Q psy793 374 ALDLL 378 (414)
Q Consensus 374 al~l~ 378 (414)
|-.+.
T Consensus 993 Aqafs 997 (1416)
T KOG3617|consen 993 AQAFS 997 (1416)
T ss_pred HHHHH
Confidence 76543
No 376
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=86.17 E-value=9.9 Score=27.97 Aligned_cols=39 Identities=10% Similarity=-0.069 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhc
Q psy793 260 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYN 298 (414)
Q Consensus 260 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~ 298 (414)
..+.|....++|..+=..|+.++|+.+|+++++.+....
T Consensus 4 ~~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ 42 (79)
T cd02679 4 YYKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGI 42 (79)
T ss_pred HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHc
Confidence 456788889999999999999999999999999986443
No 377
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.10 E-value=21 Score=30.72 Aligned_cols=69 Identities=13% Similarity=0.093 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy793 310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLL 378 (414)
Q Consensus 310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 378 (414)
+..--.++..+|.-|.+.|++++|++.|.++....-.. ...++++-.+....++|........+|-.+-
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34445789999999999999999999999988775332 3567888888889999999999999998764
No 378
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=85.85 E-value=0.28 Score=41.32 Aligned_cols=22 Identities=59% Similarity=0.945 Sum_probs=19.2
Q ss_pred ccccchhcchhhhHhhcCCCCc
Q psy793 106 VISQYFHRIIPQFMIQGGDITN 127 (414)
Q Consensus 106 ~~~~~f~~~~~~~~~~~g~~~~ 127 (414)
|....|||+++.||+||||+.+
T Consensus 36 Ydg~~FHRVi~~FmiQgGd~~~ 57 (158)
T COG0652 36 YDGTIFHRVIPGFMIQGGDPTG 57 (158)
T ss_pred CCCceEEEeecCceeecCCCCC
Confidence 4578899999999999999874
No 379
>KOG1839|consensus
Probab=85.79 E-value=6.3 Score=43.66 Aligned_cols=106 Identities=13% Similarity=0.164 Sum_probs=86.4
Q ss_pred HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793 263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 342 (414)
Q Consensus 263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 342 (414)
.+....+.|......+.|.+|.+ ..+++.+++.. ...+.+....+|..+|..+.+++++++|+..+.+|.-
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v--------~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~i 1001 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNV--------MGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACI 1001 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHh--------hhhcchhHHHHHHHHHHHHhhhcchHHHHHhccccee
Confidence 35667788888888999999988 77777775421 1223577889999999999999999999999999875
Q ss_pred cC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793 343 ME--------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 377 (414)
Q Consensus 343 ~~--------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 377 (414)
+. |+...+|-+++...+..+....|+..+.+++.+
T Consensus 1002 i~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1002 ISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred eechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 53 455678999999999999999999999999875
No 380
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=85.76 E-value=1.5 Score=42.83 Aligned_cols=60 Identities=15% Similarity=0.355 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy793 316 ALLNMAAVQLKFKAYKRAINLCDDILLME---------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALD 376 (414)
Q Consensus 316 ~~~nla~~~~~l~~~~~A~~~~~~al~~~---------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~ 376 (414)
....+..++.-+|+|..|++..+.. +++ +-+...+|..|-||+.+++|.+|++.|..++-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888899999999876544 222 33567899999999999999999999998874
No 381
>KOG2300|consensus
Probab=85.68 E-value=13 Score=37.02 Aligned_cols=100 Identities=17% Similarity=0.133 Sum_probs=77.6
Q ss_pred HHHHHHhhhHHh-hhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH
Q psy793 264 IRTIKNSGNEYF-KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-AYKRAINLCDDIL 341 (414)
Q Consensus 264 a~~~~~~G~~~~-~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~A~~~~~~al 341 (414)
|......|..++ -..+++.|..+.++|+.+..... .+......++.-++.||.... .+..|.....+|+
T Consensus 46 art~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip---------~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkai 116 (629)
T KOG2300|consen 46 ARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIP---------SFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAI 116 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccc---------cHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 555666666655 47899999999999999865433 112334567788999999888 7899999999999
Q ss_pred hcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHH
Q psy793 342 LMEPNNV----KALFRRGRAQVSMNNFEQGLQDYE 372 (414)
Q Consensus 342 ~~~p~~~----~a~~~~g~~~~~lg~~~~A~~~~~ 372 (414)
++....+ +..+.+++.+.-..|+..|++.+.
T Consensus 117 elsq~~p~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 117 ELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred HHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 9976554 677889999999999999988744
No 382
>KOG0529|consensus
Probab=85.45 E-value=36 Score=33.20 Aligned_cols=74 Identities=19% Similarity=0.190 Sum_probs=63.3
Q ss_pred HHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q psy793 325 LKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN--NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 398 (414)
Q Consensus 325 ~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg--~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~ 398 (414)
.+..-+++-+.+...+|+++|+...+|+.+..++.+.+ ++..-++..+++++.+|.|-.++.....+.......
T Consensus 86 ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~ 161 (421)
T KOG0529|consen 86 EKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS 161 (421)
T ss_pred HHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence 33445778888999999999999999999999999775 478889999999999999998888888887776666
No 383
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=85.44 E-value=12 Score=34.22 Aligned_cols=83 Identities=18% Similarity=0.153 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC------CHHHHHHH
Q psy793 281 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN------NVKALFRR 354 (414)
Q Consensus 281 ~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~------~~~a~~~~ 354 (414)
...+..+.+|++.+..... ......+...+|.-|+++|+|++|+..++.+...-.. ....+..+
T Consensus 155 ~~iI~lL~~A~~~f~~~~~----------~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l 224 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQ----------NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRL 224 (247)
T ss_pred HHHHHHHHHHHHHHHHhcc----------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 4556667777766544331 2344566778999999999999999999999755321 23567788
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q psy793 355 GRAQVSMNNFEQGLQDYEQ 373 (414)
Q Consensus 355 g~~~~~lg~~~~A~~~~~~ 373 (414)
..|+..+|+.+..+...-+
T Consensus 225 ~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 225 LECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 8999999999887765443
No 384
>KOG2047|consensus
Probab=85.28 E-value=41 Score=34.91 Aligned_cols=123 Identities=16% Similarity=0.197 Sum_probs=82.1
Q ss_pred HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCC
Q psy793 266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP 345 (414)
Q Consensus 266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p 345 (414)
.+...|..|-..|+.+.|...|++|+.. +... ......+|.+-|..-++..+++.|+...++|..+..
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V-~y~~-----------v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~ 456 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKV-PYKT-----------VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPT 456 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcC-Cccc-----------hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCC
Confidence 3556788888888888888888888864 1111 234456777777777788888888888888775522
Q ss_pred C------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q psy793 346 N------------------NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLN 400 (414)
Q Consensus 346 ~------------------~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~ 400 (414)
. +.+.|-..+.....+|=++...+.|++.++|----+.+..+.+..+..-+.-++
T Consensus 457 ~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfee 529 (835)
T KOG2047|consen 457 NPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEE 529 (835)
T ss_pred chhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHH
Confidence 1 133444455556666677777777777777776667777777666655444443
No 385
>KOG1839|consensus
Probab=84.91 E-value=7.3 Score=43.18 Aligned_cols=109 Identities=15% Similarity=0.099 Sum_probs=85.7
Q ss_pred HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 341 (414)
Q Consensus 262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 341 (414)
+.+..++..+..+.+.+++++|+..-.+|.-+.+... ....+.....|.|++...+..++...|+..+.+++
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~--------g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~ 1042 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVL--------GKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRAL 1042 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhc--------cCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHH
Confidence 4567788899999999999999998888876532211 11146777889999999999999999999988887
Q ss_pred hc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy793 342 LM--------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL 378 (414)
Q Consensus 342 ~~--------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 378 (414)
.+ .|.-+-..-+++..+..+++++-|+.+++.|+.++
T Consensus 1043 ~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1043 KLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred HhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 65 35455556788888889999999999999999865
No 386
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.71 E-value=34 Score=36.72 Aligned_cols=109 Identities=18% Similarity=0.097 Sum_probs=81.1
Q ss_pred HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793 263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 342 (414)
Q Consensus 263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 342 (414)
...-....+-......+|.+|-....++...++....... .......-.-.|.+....++.++|++.++.++.
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~-------~~l~ae~~aL~a~val~~~~~e~a~~lar~al~ 486 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQ-------GDLLAEFQALRAQVALNRGDPEEAEDLARLALV 486 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccch-------hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444455677777778888888887777776543221111 233445555677888889999999999999998
Q ss_pred cCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy793 343 MEPNN-----VKALFRRGRAQVSMNNFEQGLQDYEQALDLL 378 (414)
Q Consensus 343 ~~p~~-----~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 378 (414)
.-|.+ .-++...|.+.+-.|++++|..+.+.+.++.
T Consensus 487 ~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 487 QLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred hcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 87765 3577788999999999999999999998874
No 387
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=84.44 E-value=33 Score=33.30 Aligned_cols=118 Identities=12% Similarity=0.078 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhhhHHhhhc---------CHHHHHHHHHHHHHHHHhhccCCcHHHH-HhhHHHHHHHHHHHHHHHHHhh
Q psy793 259 QMEDVIRTIKNSGNEYFKLN---------RMHDAQRKYKKAVRYIKWYNQSQSKTQQ-KHFRSYYTAALLNMAAVQLKFK 328 (414)
Q Consensus 259 ~~~~~a~~~~~~G~~~~~~~---------~~~~A~~~y~~Al~~~~~~~~~~~~~~~-~~~~~~~~~~~~nla~~~~~l~ 328 (414)
-..+.+..+++.|-.+.+.+ ..+.|..+|+.|--++............ ..+++....++..++.+.-+..
T Consensus 109 l~fEka~vlfNigal~sq~a~~~~r~~~~glK~A~~~fq~AAG~F~~l~e~~~~~~~~~Dl~~~~l~~L~~lmLAQAQEc 188 (361)
T cd09239 109 IKFEEASVLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAWAFAYLREHYPQVYGAVDMSSQLLSFNYSLMLAQAQEC 188 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 45677888888888876544 3677888888887766533322111111 2445555666666555544443
Q ss_pred CHHHHH-----------------HHHHHHHhc------C-----C----CC------------HHHHHHHHHHHHHcCCH
Q psy793 329 AYKRAI-----------------NLCDDILLM------E-----P----NN------------VKALFRRGRAQVSMNNF 364 (414)
Q Consensus 329 ~~~~A~-----------------~~~~~al~~------~-----p----~~------------~~a~~~~g~~~~~lg~~ 364 (414)
=|.+|+ .+|+.|++. + + .+ +.++|+.|......+++
T Consensus 189 ~~~Kai~d~~k~sliAKLA~q~~~~Y~~a~~~l~~~~~~~~~~~~~i~~~W~~~v~~K~~~f~A~A~y~~a~~~~~~~k~ 268 (361)
T cd09239 189 LLEKSLLDNRKSHITAKVSAQVVEYYKEALRALENWESNSKIILGKIQKEWRKLVQMKIAYYASIAHLHMGKQSEEQQKM 268 (361)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 343332 234444432 1 1 11 23556677777766778
Q ss_pred HHHHHHHHHHHh
Q psy793 365 EQGLQDYEQALD 376 (414)
Q Consensus 365 ~~A~~~~~~al~ 376 (414)
-+++..|+.|..
T Consensus 269 Ge~Ia~L~~A~~ 280 (361)
T cd09239 269 GERVAYYQLAND 280 (361)
T ss_pred HHHHHHHHHHHH
Confidence 888887777766
No 388
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.22 E-value=1.3 Score=24.73 Aligned_cols=24 Identities=25% Similarity=0.086 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHH
Q psy793 315 AALLNMAAVQLKFKAYKRAINLCD 338 (414)
Q Consensus 315 ~~~~nla~~~~~l~~~~~A~~~~~ 338 (414)
.+++++|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467899999999999999998765
No 389
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=83.65 E-value=17 Score=33.87 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=69.6
Q ss_pred hcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHH----hhCHHHHHHHHHHHHhcCCCC-HHHH
Q psy793 277 LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK----FKAYKRAINLCDDILLMEPNN-VKAL 351 (414)
Q Consensus 277 ~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~A~~~~~~al~~~p~~-~~a~ 351 (414)
..++.+|+..|.++.+ .....+.+++|..|.. ..++.+|..++.+|.+..-.. ..+.
T Consensus 90 ~~~~~~A~~~~~~~a~------------------~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~ 151 (292)
T COG0790 90 SRDKTKAADWYRCAAA------------------DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAM 151 (292)
T ss_pred cccHHHHHHHHHHHhh------------------cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHH
Confidence 3457788888875553 3445677788888887 558999999999999885433 3458
Q ss_pred HHHHHHHHHc-----C--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy793 352 FRRGRAQVSM-----N--NFEQGLQDYEQALDLLPNDQQILKEIAFVR 392 (414)
Q Consensus 352 ~~~g~~~~~l-----g--~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 392 (414)
+++|.+|..- - +...|+..|.++.... +..+...++.++
T Consensus 152 ~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y 197 (292)
T COG0790 152 YRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMY 197 (292)
T ss_pred HHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHH
Confidence 8888888763 1 3347999999988876 666777777655
No 390
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=83.53 E-value=15 Score=35.85 Aligned_cols=100 Identities=12% Similarity=0.113 Sum_probs=65.3
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHH--hhCHHHHHHHHHHHH
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK--FKAYKRAINLCDDIL 341 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--l~~~~~A~~~~~~al 341 (414)
+.....++..+|+.++|..|...+...+..++... ....+..++.+|.. .-+|.+|.+.+++.+
T Consensus 131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~--------------~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 131 GDREWRRAKELFNRYDYGAAARILEELLRRLPGRE--------------EYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchh--------------hHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45667788899999999999999999887422111 13556666666654 556778877777665
Q ss_pred hcCC------------------------------C-C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793 342 LMEP------------------------------N-N-------VKALFRRGRAQVSMNNFEQGLQDYEQALDL 377 (414)
Q Consensus 342 ~~~p------------------------------~-~-------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 377 (414)
...- . . ..-++.-|.=....|+|+.|+.-+-+++++
T Consensus 197 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 197 KRDKALNQEREGLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHhhhhHhHHHHHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4210 0 0 011222333344578999999998888875
No 391
>KOG2422|consensus
Probab=83.49 E-value=16 Score=37.10 Aligned_cols=124 Identities=23% Similarity=0.163 Sum_probs=87.9
Q ss_pred HHhhhHHhh---hcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc-
Q psy793 268 KNSGNEYFK---LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM- 343 (414)
Q Consensus 268 ~~~G~~~~~---~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~- 343 (414)
...|+.+|+ ...|++|...|.-|+...+.+....- ....|..+..++.+|..+..+|+.+-|-...+++|=.
T Consensus 239 sq~~isfF~~~hs~sYeqaq~~F~~av~~~d~n~v~~l----L~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~ 314 (665)
T KOG2422|consen 239 SQKGISFFKFEHSNSYEQAQRDFYLAVIVHDPNNVLIL----LISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVF 314 (665)
T ss_pred ccCceeEEEeecchHHHHHHHHHHHHHhhcCCcceeee----eccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 345666664 45788899988888877554332111 1114778888999999999999988877777776611
Q ss_pred --------------------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHH
Q psy793 344 --------------------EPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN-DQQILKEIAFVRKQM 395 (414)
Q Consensus 344 --------------------~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-~~~~~~~l~~~~~~~ 395 (414)
.|.| ..++|+.-+.+.+.|.+.-|.+.++..+.++|. |+-+...+-.++...
T Consensus 315 d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALr 390 (665)
T KOG2422|consen 315 DRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALR 390 (665)
T ss_pred HHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHH
Confidence 2333 356777778888899999999999999999998 876665555554433
No 392
>KOG0530|consensus
Probab=83.22 E-value=12 Score=34.21 Aligned_cols=86 Identities=15% Similarity=0.183 Sum_probs=68.5
Q ss_pred HhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy793 326 KFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSM-NNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM 404 (414)
Q Consensus 326 ~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l-g~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~ 404 (414)
+...-..|+.....+|.++|-+...|..+-.++..+ .+..+-+..+...++-+|.|-.++...+.+...++...-.|=.
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELe 134 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELE 134 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHH
Confidence 344557888889999999999998887666666665 6788899999999999999999999999888888755545555
Q ss_pred HHHhhhc
Q psy793 405 TYARMFQ 411 (414)
Q Consensus 405 ~~~~~f~ 411 (414)
..+.|+.
T Consensus 135 f~~~~l~ 141 (318)
T KOG0530|consen 135 FTKLMLD 141 (318)
T ss_pred HHHHHHh
Confidence 5566654
No 393
>KOG0879|consensus
Probab=82.85 E-value=0.51 Score=37.81 Aligned_cols=27 Identities=41% Similarity=0.769 Sum_probs=23.4
Q ss_pred CcccccccccchhcchhhhHhhcCCCC
Q psy793 100 ENFKLKVISQYFHRIIPQFMIQGGDIT 126 (414)
Q Consensus 100 ~~~~~~~~~~~f~~~~~~~~~~~g~~~ 126 (414)
...++.++...|||++.+||+||||+.
T Consensus 54 ~g~PiGYK~~tFHRvIkdFMiQgGDFv 80 (177)
T KOG0879|consen 54 DGVPIGYKNSTFHRVIKDFMIQGGDFV 80 (177)
T ss_pred CCccccccccchHHHhhhheeccCcee
Confidence 345677889999999999999999977
No 394
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=82.67 E-value=4.2 Score=33.63 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q psy793 315 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFE 365 (414)
Q Consensus 315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~ 365 (414)
.....+|...+..|+|+-|+..++.++..+|++..+..-++.++..++.-.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 456678888899999999999999999999999999999999999887543
No 395
>KOG1258|consensus
Probab=82.54 E-value=58 Score=33.36 Aligned_cols=110 Identities=9% Similarity=0.013 Sum_probs=78.2
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
...+..-...-.+.|+++.....|.+++-- -.++...|.+.+.-....|+.+-|-....++.++
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~----------------cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i 360 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP----------------CALYDEFWIKYARWMESSGDVSLANNVLARACKI 360 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH----------------HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh
Confidence 344555566667889999999999998866 4566677777777777777777777777777666
Q ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy793 344 E-PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA 389 (414)
Q Consensus 344 ~-p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~ 389 (414)
. |..+..+..-+..-...|++..|...|+++.+-.|+...+...-.
T Consensus 361 ~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~ 407 (577)
T KOG1258|consen 361 HVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKI 407 (577)
T ss_pred cCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHH
Confidence 3 555566666667777778888888888888876677655443333
No 396
>KOG0881|consensus
Probab=82.49 E-value=0.46 Score=37.61 Aligned_cols=20 Identities=65% Similarity=0.953 Sum_probs=17.8
Q ss_pred cccchhcchhhhHhhcCCCC
Q psy793 107 ISQYFHRIIPQFMIQGGDIT 126 (414)
Q Consensus 107 ~~~~f~~~~~~~~~~~g~~~ 126 (414)
....|||+++.|++||||++
T Consensus 47 n~v~FHRii~DFmiQGGDPT 66 (164)
T KOG0881|consen 47 NGVIFHRIIKDFMIQGGDPT 66 (164)
T ss_pred cceeeeehhhhheeecCCCC
Confidence 36789999999999999866
No 397
>KOG1463|consensus
Probab=82.39 E-value=18 Score=34.31 Aligned_cols=123 Identities=12% Similarity=0.069 Sum_probs=84.6
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHH--HHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAA--LLNMAAVQLKFKAYKRAINLCDDIL 341 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~--~~nla~~~~~l~~~~~A~~~~~~al 341 (414)
+..=...|..+...++|.-|..+|-+|.+-+..... +..-... |+-++...+-+-+--.++-..+.++
T Consensus 209 a~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~----------~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l 278 (411)
T KOG1463|consen 209 ATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDD----------DVKALTSLKYMLLCKIMLNLPDDVAALLSAKLAL 278 (411)
T ss_pred HHHHHhccceeecccccchHHHHHHHHHccccccCC----------cHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHH
Confidence 444556788888899999999999999876443331 1122222 4444444444444445666778888
Q ss_pred hcCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q psy793 342 LMEPNNVKALFRRGRAQVS--MNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL 399 (414)
Q Consensus 342 ~~~p~~~~a~~~~g~~~~~--lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~ 399 (414)
+.+.....|+-..|.++.. +.+|+.|+..|++=+.-+ +-++..+..++..+-+++
T Consensus 279 ~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D---~ivr~Hl~~Lyd~lLEkn 335 (411)
T KOG1463|consen 279 KYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAED---PIVRSHLQSLYDNLLEKN 335 (411)
T ss_pred hccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcC---hHHHHHHHHHHHHHHHHh
Confidence 9888899999999999764 589999999999887755 456666666665554443
No 398
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=82.13 E-value=12 Score=34.52 Aligned_cols=62 Identities=16% Similarity=0.004 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy793 283 AQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVS 360 (414)
Q Consensus 283 A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 360 (414)
|..+|.+|+.+ .|..-..|..+|..+...++.-.|+-+|-+++......+.|.-++...+..
T Consensus 1 A~~~Y~~A~~l----------------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL----------------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-----------------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh----------------CCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78899999999 566668899999999999999999999999998876678888888877777
No 399
>KOG2114|consensus
Probab=82.11 E-value=14 Score=39.22 Aligned_cols=33 Identities=9% Similarity=0.358 Sum_probs=28.5
Q ss_pred HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHH
Q psy793 263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIK 295 (414)
Q Consensus 263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~ 295 (414)
.+...+.-|+.+|++|+|++|...|-++|..++
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le 399 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE 399 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC
Confidence 356678899999999999999999999997654
No 400
>KOG2581|consensus
Probab=81.73 E-value=30 Score=33.73 Aligned_cols=69 Identities=19% Similarity=0.218 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHH--hcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy793 314 TAALLNMAAVQLKFKAYKRAINLCDDIL--LMEP--NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ 382 (414)
Q Consensus 314 ~~~~~nla~~~~~l~~~~~A~~~~~~al--~~~p--~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~ 382 (414)
..+.+-+-.+|+.-+.|+.|-....++- +... ..+..+|.+|.+..-+.+|..|.+++-.|+...|++.
T Consensus 209 avLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 209 AVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 3444555678888888999987777665 2222 3345677899999999999999999999999999854
No 401
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=81.33 E-value=18 Score=26.35 Aligned_cols=34 Identities=12% Similarity=0.001 Sum_probs=28.6
Q ss_pred HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHh
Q psy793 263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKW 296 (414)
Q Consensus 263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~ 296 (414)
.+..+..+|...=..|+|++|+..|..||+++-.
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 4566777888888899999999999999998644
No 402
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=81.08 E-value=2.4 Score=38.49 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy793 329 AYKRAINLCDDILLMEPNN------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381 (414)
Q Consensus 329 ~~~~A~~~~~~al~~~p~~------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~ 381 (414)
....|.+.++.||-..... .-+-++++.+++.+.+|+-|..+|.+|+.+.-++
T Consensus 54 ~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d 112 (368)
T COG5091 54 TMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDD 112 (368)
T ss_pred ChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 3567888899998664321 2356889999999999999999999999986543
No 403
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=80.97 E-value=25 Score=34.30 Aligned_cols=63 Identities=10% Similarity=0.056 Sum_probs=46.0
Q ss_pred HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHH--hhCHHHHHHHHH
Q psy793 265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK--FKAYKRAINLCD 338 (414)
Q Consensus 265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--l~~~~~A~~~~~ 338 (414)
......+..+|++.+|..|...|..+++...+.. .......+.+++.+|.. .-++++|.+.++
T Consensus 131 ~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~-----------~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 131 NTEQGYARRAINAFDYLFAHARLETLLRRLLSAV-----------NHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhcccChh-----------hhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 4445577799999999999999999997621111 23456777788887766 556888888887
No 404
>KOG3807|consensus
Probab=80.91 E-value=46 Score=31.60 Aligned_cols=52 Identities=6% Similarity=0.073 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHHHHHH
Q psy793 352 FRRGRAQVSMNNFEQGLQDYEQALDLLPND--QQILKEIAFVRKQMRHHLNLEK 403 (414)
Q Consensus 352 ~~~g~~~~~lg~~~~A~~~~~~al~l~P~~--~~~~~~l~~~~~~~~~~~~~~k 403 (414)
-|+|.|..++|+..+|++.++...+--|-. -.++.+|-+....++.+...+.
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqa 332 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQA 332 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999887766632 3455555555555555555443
No 405
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=80.79 E-value=7.1 Score=35.86 Aligned_cols=78 Identities=12% Similarity=0.081 Sum_probs=65.4
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
.+.+.+.=+.+...++++.|..+-.+.+.+ .|....-+.-+|.+|.+++.+.-|+++++..++.
T Consensus 181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l----------------~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 181 SRLLRNLKAALLRELQWELALRVAERLLDL----------------NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhh----------------CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 444555666788889999999999999988 6777777788999999999999999999999999
Q ss_pred CCCCHHHHHHHHHH
Q psy793 344 EPNNVKALFRRGRA 357 (414)
Q Consensus 344 ~p~~~~a~~~~g~~ 357 (414)
.|+.+.+-.-++..
T Consensus 245 ~P~~~~a~~ir~~l 258 (269)
T COG2912 245 CPDDPIAEMIRAQL 258 (269)
T ss_pred CCCchHHHHHHHHH
Confidence 99998876655443
No 406
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.74 E-value=2.8 Score=27.01 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 317 LLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 317 ~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
.+++|.+|+++|+++.|...+++++.-
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 368999999999999999999999953
No 407
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=80.62 E-value=2.2 Score=38.35 Aligned_cols=116 Identities=14% Similarity=0.170 Sum_probs=61.3
Q ss_pred hhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHh-hHHHHHHHHHHHHHHHHHhhC-HHHHH-HHHHHHHh-cC-CCCHH
Q psy793 275 FKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKH-FRSYYTAALLNMAAVQLKFKA-YKRAI-NLCDDILL-ME-PNNVK 349 (414)
Q Consensus 275 ~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~-~~~~~~~~~~nla~~~~~l~~-~~~A~-~~~~~al~-~~-p~~~~ 349 (414)
|..|+|+.|+.....||+.--.. ++.... .......-..+-|....+.|. ++-.. ..+..+.. .+ |+...
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~-----Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vr 168 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTM-----PDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVR 168 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCC-----CccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHH
Confidence 45689999999999999862111 111111 111222223333444444444 11111 11111111 11 44454
Q ss_pred H--HHHHHHHHH---------HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793 350 A--LFRRGRAQV---------SMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR 396 (414)
Q Consensus 350 a--~~~~g~~~~---------~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 396 (414)
| |-..|..+. ..++...|+..|++|++++|+ ..+...+..+..+++
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k-~GVK~~i~~l~~~lr 225 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK-CGVKKDIERLERRLK 225 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHh
Confidence 4 444455552 346788999999999999975 445555666666555
No 408
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=80.52 E-value=24 Score=32.46 Aligned_cols=102 Identities=4% Similarity=-0.020 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHH-HHHHHHH
Q psy793 260 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYK-RAINLCD 338 (414)
Q Consensus 260 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~-~A~~~~~ 338 (414)
..+..+.+..-+..+++.+++..|.+.-.-.++.+.... .+.......+++.++..+..-+ +.....+
T Consensus 6 y~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~-----------~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~ 74 (260)
T PF04190_consen 6 YDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSE-----------DPVDEESIARLIELISLFPPEEPERKKFIK 74 (260)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--------------SHHHHHHHHHHHHHS-TT-TTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 445667788888889999999999888777776655433 2222223345555555443221 2344445
Q ss_pred HHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy793 339 DILLME------PNNVKALFRRGRAQVSMNNFEQGLQDYE 372 (414)
Q Consensus 339 ~al~~~------p~~~~a~~~~g~~~~~lg~~~~A~~~~~ 372 (414)
+|++.. -.++..|..+|..+..-+++.+|...|-
T Consensus 75 ~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 75 AAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp HHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 555442 2467888889999999999988877664
No 409
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=80.48 E-value=16 Score=29.89 Aligned_cols=53 Identities=13% Similarity=0.040 Sum_probs=34.4
Q ss_pred HhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy793 326 KFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL 378 (414)
Q Consensus 326 ~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 378 (414)
+.++-++--+.+....+.+..++..++.+|.+|..+|+..+|-+.+++|.+.-
T Consensus 98 ~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 98 KQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33444444444444454556788999999999999999999999999998753
No 410
>KOG0880|consensus
Probab=80.21 E-value=0.5 Score=40.66 Aligned_cols=21 Identities=62% Similarity=1.075 Sum_probs=18.6
Q ss_pred ccccchhcchhhhHhhcCCCC
Q psy793 106 VISQYFHRIIPQFMIQGGDIT 126 (414)
Q Consensus 106 ~~~~~f~~~~~~~~~~~g~~~ 126 (414)
|.+..|||++|.+|+||||++
T Consensus 85 Y~gS~FhRVi~nfmIQGGd~t 105 (217)
T KOG0880|consen 85 YKGSKFHRVIPNFMIQGGDFT 105 (217)
T ss_pred cCCceeeeeecCceeecCccc
Confidence 456779999999999999988
No 411
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=79.69 E-value=3.5 Score=40.70 Aligned_cols=61 Identities=13% Similarity=0.190 Sum_probs=45.1
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy793 320 MAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 380 (414)
Q Consensus 320 la~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 380 (414)
+-....++++|++|+....-.|.-.-..++..---|.....++-+++|...+++.+.++|.
T Consensus 363 ~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 363 RLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 3345667777888877777777666666666555566677788889999999999998875
No 412
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.78 E-value=45 Score=29.32 Aligned_cols=118 Identities=16% Similarity=0.149 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhC---------------HHHHHHHHHHHHhc-CC
Q psy793 282 DAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA---------------YKRAINLCDDILLM-EP 345 (414)
Q Consensus 282 ~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~---------------~~~A~~~~~~al~~-~p 345 (414)
.+++.|.++|++.....+....+....-........-++......++. -++|..-+-++-.- .-
T Consensus 59 ~~le~Y~kCielAa~Iq~i~~~e~k~~R~~a~~~s~~~l~~L~~~tk~S~dP~llYy~Wsr~~d~~A~~~fL~~E~~~~l 138 (203)
T PF11207_consen 59 EALEKYSKCIELAAQIQHIKQKERKTDRFRALLHSYQELERLQEETKNSQDPYLLYYHWSRFGDQEALRRFLQLEGTPEL 138 (203)
T ss_pred HHHHHHHHHHHHHhcCeeechHhHHHHHHHHHHHHHHHHHHHHHHHccCCCccHHHHHhhccCcHHHHHHHHHHcCCCCC
Confidence 467789999988654333222222222222223333334433333222 23343333222211 12
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHHHHHHH
Q psy793 346 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND----QQILKEIAFVRKQMRHHLN 400 (414)
Q Consensus 346 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~----~~~~~~l~~~~~~~~~~~~ 400 (414)
+.+...+.+|.-|. ..|.++|+..|-+++++.+.+ +++..-|+.+....++.+.
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 45777777776555 789999999999999997654 7888888888877666543
No 413
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=78.54 E-value=44 Score=33.18 Aligned_cols=101 Identities=6% Similarity=-0.062 Sum_probs=76.1
Q ss_pred HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793 265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 344 (414)
Q Consensus 265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 344 (414)
-.+.-+|-.+-+++++.+|.+.|.+...-..... --....++.++-..-+-+.+.+.-.......-+..
T Consensus 7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~-----------f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~ 75 (549)
T PF07079_consen 7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKESSP-----------FLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQF 75 (549)
T ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcch-----------HHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 3466789999999999999999998886533222 12233566666666666777777666666666778
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy793 345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALD 376 (414)
Q Consensus 345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~ 376 (414)
|+.+...+..|...++.+.|.+|+..+..-..
T Consensus 76 ~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~ 107 (549)
T PF07079_consen 76 GKSAYLPLFKALVAYKQKEYRKALQALSVWKE 107 (549)
T ss_pred CCchHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 88888999999999999999999988765544
No 414
>KOG1497|consensus
Probab=78.29 E-value=62 Score=30.61 Aligned_cols=98 Identities=10% Similarity=-0.002 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCC------CCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Q psy793 311 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP------NNV--KALFRRGRAQVSMNNFEQGLQDYEQALD--LLPN 380 (414)
Q Consensus 311 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p------~~~--~a~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~ 380 (414)
.....+...+|..|.+-++|+.|...+. ++.++- .+. ..+.+.|.+|...++-.+|..+..++-- .+..
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~ 178 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESS 178 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhccc
Confidence 4456788899999999999999865432 222221 112 2456889999999999999998888653 3457
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy793 381 DQQILKEIAFVRKQMRHHLNLEKMTYARM 409 (414)
Q Consensus 381 ~~~~~~~l~~~~~~~~~~~~~~k~~~~~~ 409 (414)
|+..+..+..|+.+.-++..+--+..+++
T Consensus 179 Ne~Lqie~kvc~ARvlD~krkFlEAAqrY 207 (399)
T KOG1497|consen 179 NEQLQIEYKVCYARVLDYKRKFLEAAQRY 207 (399)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999998888877654444444
No 415
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=78.09 E-value=8.6 Score=35.72 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=57.3
Q ss_pred HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
...+...+..+...++++.++...++.+.+ +|....+|..+-..|++.|+...|+..|.+.-..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~----------------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIEL----------------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc----------------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 456777888999999999999999999999 8899999999999999999999999998887653
No 416
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=77.57 E-value=7.4 Score=22.14 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793 362 NNFEQGLQDYEQALDLLPNDQQILKEIAFV 391 (414)
Q Consensus 362 g~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 391 (414)
|+++.|...|++++...|.+..++......
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 456777777888887777777777655443
No 417
>KOG0985|consensus
Probab=77.46 E-value=45 Score=36.55 Aligned_cols=125 Identities=14% Similarity=0.046 Sum_probs=81.1
Q ss_pred hhhHHhhhcCHHHHHHHHHH------HHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 270 SGNEYFKLNRMHDAQRKYKK------AVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 270 ~G~~~~~~~~~~~A~~~y~~------Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
.|+.....+-|++|...|++ |+..+-....+.+.+..-...-....+|..+|.+.+..+...+|++.|-+|
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 57777777788888777643 444332222111111111112334678999999999999999999988664
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q psy793 344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLN 400 (414)
Q Consensus 344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~ 400 (414)
+++..|...-.+....|.|++-++++..|.+.-- .+.+-..|-.++.+..+..+
T Consensus 1131 --dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~AyAkt~rl~e 1184 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFAYAKTNRLTE 1184 (1666)
T ss_pred --CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-CccchHHHHHHHHHhchHHH
Confidence 5778888888899999999999999998877542 22233333344444444333
No 418
>KOG0546|consensus
Probab=77.44 E-value=1.4 Score=41.71 Aligned_cols=80 Identities=15% Similarity=0.053 Sum_probs=59.8
Q ss_pred HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC
Q psy793 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN 346 (414)
Q Consensus 267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~ 346 (414)
.++.+...++.+.+..|+..-..+++. ++....+++.++..++.+.++++|++++..+....|+
T Consensus 278 ~~n~~~~~lk~~~~~~a~~~~~~~~~~----------------~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~ 341 (372)
T KOG0546|consen 278 RRNLAAVGLKVKGRGGARFRTNEALRD----------------ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPN 341 (372)
T ss_pred ccchHHhcccccCCCcceecccccccc----------------ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcc
Confidence 334555666666666666666556654 7778899999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHcC
Q psy793 347 NVKALFRRGRAQVSMN 362 (414)
Q Consensus 347 ~~~a~~~~g~~~~~lg 362 (414)
+....-.+..+-....
T Consensus 342 d~~i~~~~~~~~~~~~ 357 (372)
T KOG0546|consen 342 DKAIEEELENVRQKKK 357 (372)
T ss_pred hHHHHHHHHHhhhHHH
Confidence 8765555544444333
No 419
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=77.36 E-value=45 Score=38.02 Aligned_cols=130 Identities=23% Similarity=0.211 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHH-HHHHHHHHHHH--------------
Q psy793 260 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYY-TAALLNMAAVQ-------------- 324 (414)
Q Consensus 260 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~-------------- 324 (414)
.....+..+..|+.++..|.|.+|+..|..|+.++..... ..+ ..++-.++.|.
T Consensus 238 ~r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D-----------~lW~a~alEg~~~~~~l~~~~~~~~qip~ 306 (1185)
T PF08626_consen 238 KRCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSND-----------YLWLASALEGIAVCLLLLSWLGMDFQIPQ 306 (1185)
T ss_pred hhhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCc-----------HhhhHHHHHHHHHHHHHHhccCCCccccc
Confidence 3345788899999999999999999999999998764331 111 01111111111
Q ss_pred -------------------------------------------------HHhhCHHHHHHHHHHHHhc----CCC--CHH
Q psy793 325 -------------------------------------------------LKFKAYKRAINLCDDILLM----EPN--NVK 349 (414)
Q Consensus 325 -------------------------------------------------~~l~~~~~A~~~~~~al~~----~p~--~~~ 349 (414)
.-...+++|+.+|.++... .|. ..+
T Consensus 307 i~~~~~~~~~~~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E 386 (1185)
T PF08626_consen 307 ICSPLCPISSSTSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSE 386 (1185)
T ss_pred hhcccCCCCCccCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHH
Confidence 1122377888888888633 233 246
Q ss_pred HHHHHHHHHHHcC--------------------CHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHH
Q psy793 350 ALFRRGRAQVSMN--------------------NFEQGLQDYEQALDLLPND------QQILKEIAFVRKQMRHHLN 400 (414)
Q Consensus 350 a~~~~g~~~~~lg--------------------~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~~~~~~~~~ 400 (414)
+..+.+..+..+. .-.++...+.+++.++..+ ..+...++.++..++=..+
T Consensus 387 ~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK 463 (1185)
T PF08626_consen 387 ACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRK 463 (1185)
T ss_pred HHHHHHHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHH
Confidence 7788888877777 7788888888888776532 3455556666666554443
No 420
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.16 E-value=8 Score=35.90 Aligned_cols=52 Identities=21% Similarity=0.167 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q psy793 349 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLN 400 (414)
Q Consensus 349 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~ 400 (414)
+.+...+..|...|.+.+|+...++++.++|-+.+.+..+..++..+++..+
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is 331 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEIS 331 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchh
Confidence 3445567889999999999999999999999999999999999999888544
No 421
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.85 E-value=48 Score=28.57 Aligned_cols=99 Identities=11% Similarity=0.014 Sum_probs=69.7
Q ss_pred HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH-hcC
Q psy793 266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL-LME 344 (414)
Q Consensus 266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al-~~~ 344 (414)
.....|.....+|+-..|+..|.++-.-.+ .+ ....-.+.+.-|..+.-.+-|+....-.+..- .-+
T Consensus 96 A~mr~at~~a~kgdta~AV~aFdeia~dt~-~P-----------~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n 163 (221)
T COG4649 96 ARMRAATLLAQKGDTAAAVAAFDEIAADTS-IP-----------QIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGN 163 (221)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhccCC-Cc-----------chhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCC
Confidence 455677888889999999999988765311 00 12223455666777888888988765444332 224
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy793 345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALD 376 (414)
Q Consensus 345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~ 376 (414)
|-...+.-.+|.+-++-|++.+|...|.....
T Consensus 164 ~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 164 PMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 44456667789999999999999999999887
No 422
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=76.84 E-value=13 Score=32.30 Aligned_cols=52 Identities=21% Similarity=0.238 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy793 330 YKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ 382 (414)
Q Consensus 330 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~ 382 (414)
-...++..++.+...| ++..+.+++.++..+|+.++|....+++..+.|.+.
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~ 178 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPADE 178 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHH
Confidence 4455666777788877 888999999999999999999999999999999443
No 423
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=76.82 E-value=17 Score=34.63 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=52.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q psy793 335 NLCDDILLMEPNNVKALFRRGRAQVSMNN------------FEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLN 400 (414)
Q Consensus 335 ~~~~~al~~~p~~~~a~~~~g~~~~~lg~------------~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~ 400 (414)
.-+++.++-+|++..+|..+....-.+-. .+..+..|++|++.+|++..++..+-.+..++-...+
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH
Confidence 44788899999999999999877665533 5677889999999999999988887777766654433
No 424
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=75.81 E-value=66 Score=31.03 Aligned_cols=117 Identities=11% Similarity=0.118 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhhhHHhhhc---------CHHHHHHHHHHHHHHHHhhccCCc----HHHHHhhHHHHHHHHHHHHHHHHH
Q psy793 260 MEDVIRTIKNSGNEYFKLN---------RMHDAQRKYKKAVRYIKWYNQSQS----KTQQKHFRSYYTAALLNMAAVQLK 326 (414)
Q Consensus 260 ~~~~a~~~~~~G~~~~~~~---------~~~~A~~~y~~Al~~~~~~~~~~~----~~~~~~~~~~~~~~~~nla~~~~~ 326 (414)
..+.+..+++.|-.+...+ ..+.|..+|++|--++........ .....++.+....++..++.+.-+
T Consensus 115 ~fEka~vlfNiaal~s~la~~~~~~~~eglK~A~~~fq~AAG~F~~l~e~~~~~~~~~~s~Dl~~~~l~~l~~lmLAQAQ 194 (346)
T cd09240 115 GYEKVCVLFNIAALQSQIAAEQNLDTDEGLKLAAKLFQQAAGIFNHLKETVLSALQQEPTPDLSPDTLSALSALMLAQAQ 194 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4566777888777665433 257888899988877654332211 111223344555555555554444
Q ss_pred hhCHHHHH-----------------HHHHHHHhc----------CCCC------------HHHHHHHHHHHHHcCCHHHH
Q psy793 327 FKAYKRAI-----------------NLCDDILLM----------EPNN------------VKALFRRGRAQVSMNNFEQG 367 (414)
Q Consensus 327 l~~~~~A~-----------------~~~~~al~~----------~p~~------------~~a~~~~g~~~~~lg~~~~A 367 (414)
.-=|.+|+ ..|+.|+.. ...+ +.++|+.|..+...+++-+|
T Consensus 195 E~~~~Kai~~~~k~~liAKLa~qv~~~Y~~a~~~l~~~~~~~~~~~~W~~~~~~K~~~f~a~A~y~~a~~~~e~~k~Gea 274 (346)
T cd09240 195 EVFYLKATRDKMKDAIIAKLAAQAADYYGDAFKQCQREDVRSLLPKDWIPVLAGKQAYFHALAEYHQSLVAKAQKKFGEE 274 (346)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHhcchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHH
Confidence 33333332 223333322 1111 34677778777778888888
Q ss_pred HHHHHHHHh
Q psy793 368 LQDYEQALD 376 (414)
Q Consensus 368 ~~~~~~al~ 376 (414)
+..++.|.+
T Consensus 275 Ia~L~~A~~ 283 (346)
T cd09240 275 IARLQHALE 283 (346)
T ss_pred HHHHHHHHH
Confidence 888888876
No 425
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=74.50 E-value=86 Score=30.35 Aligned_cols=117 Identities=15% Similarity=0.173 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhhhHHhhh---------cCHHHHHHHHHHHHHHHHhhccCCcHH--HHHhhHHHHHHHHHHHHHHHHHhh
Q psy793 260 MEDVIRTIKNSGNEYFKL---------NRMHDAQRKYKKAVRYIKWYNQSQSKT--QQKHFRSYYTAALLNMAAVQLKFK 328 (414)
Q Consensus 260 ~~~~a~~~~~~G~~~~~~---------~~~~~A~~~y~~Al~~~~~~~~~~~~~--~~~~~~~~~~~~~~nla~~~~~l~ 328 (414)
..+.+..+++.|-.+... ...+.|..+|++|--++.......... ....+.+....++..++.+.-+.-
T Consensus 102 ~fEka~VLfNigal~sq~a~~~~~~~~~glK~A~~~fq~AAG~F~~l~~~~~~~~~~s~Dl~~~~l~~L~~lmLAQAQE~ 181 (355)
T cd09241 102 KFERANILYNLGALYSQLALSENRYTDEGLKRACSYFQASAGCFEYILQHLLPTLSPPPDLDENTLKALESLMLAQAQEC 181 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 456677777777766543 347888899999888776544332222 233445555666666665544433
Q ss_pred CHHHHH-----------------HHHHHHHhc---CC----C------------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy793 329 AYKRAI-----------------NLCDDILLM---EP----N------------NVKALFRRGRAQVSMNNFEQGLQDYE 372 (414)
Q Consensus 329 ~~~~A~-----------------~~~~~al~~---~p----~------------~~~a~~~~g~~~~~lg~~~~A~~~~~ 372 (414)
-|.+|+ .+|+.|++. .+ . .+.++|+.|......+++-+++..++
T Consensus 182 ~~~Kai~~~~k~sliAKLa~qv~~~Y~~a~~~l~~~~~i~~~W~~~v~~K~~~f~A~A~y~~a~~~~e~~k~Ge~Ia~L~ 261 (355)
T cd09241 182 FWQKAISDGTKDSLIAKLAAQVSDYYQEALKYANKSDLIRSDWINHLKVKKHHFKAAAHYRMALVALEKSKYGEEVARLR 261 (355)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 333333 234444322 11 1 13356777777777778888888888
Q ss_pred HHHh
Q psy793 373 QALD 376 (414)
Q Consensus 373 ~al~ 376 (414)
.|+.
T Consensus 262 ~A~~ 265 (355)
T cd09241 262 VALA 265 (355)
T ss_pred HHHH
Confidence 7776
No 426
>KOG3783|consensus
Probab=74.38 E-value=31 Score=34.83 Aligned_cols=72 Identities=10% Similarity=0.018 Sum_probs=55.4
Q ss_pred HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC
Q psy793 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN 346 (414)
Q Consensus 267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~ 346 (414)
+...+..+.-.|+-+.|+..++.++.. .......-+++.+|+++.-+.+|..|-.++......+.
T Consensus 270 ll~~ar~l~~~g~~eaa~~~~~~~v~~--------------~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desd- 334 (546)
T KOG3783|consen 270 LLMEARILSIKGNSEAAIDMESLSIPI--------------RMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESD- 334 (546)
T ss_pred HHHHHHHHHHcccHHHHHHHHHhcccH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh-
Confidence 344666777777788888888888762 12556677899999999999999999999999988864
Q ss_pred CHHHHHH
Q psy793 347 NVKALFR 353 (414)
Q Consensus 347 ~~~a~~~ 353 (414)
+..|+|.
T Consensus 335 WS~a~Y~ 341 (546)
T KOG3783|consen 335 WSHAFYT 341 (546)
T ss_pred hhHHHHH
Confidence 5566553
No 427
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=74.21 E-value=14 Score=32.40 Aligned_cols=54 Identities=17% Similarity=0.129 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHH
Q psy793 314 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPN----NVKALFRRGRAQVSMNNFEQGL 368 (414)
Q Consensus 314 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~----~~~a~~~~g~~~~~lg~~~~A~ 368 (414)
+.+.+.+|..|. ..+.++|+..+-++|++.+. |+..+..++.+++.+++++.|-
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 566677776665 67899999999999998543 5889999999999999999884
No 428
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=73.93 E-value=17 Score=26.30 Aligned_cols=17 Identities=24% Similarity=0.649 Sum_probs=7.9
Q ss_pred HcCCHHHHHHHHHHHHh
Q psy793 360 SMNNFEQGLQDYEQALD 376 (414)
Q Consensus 360 ~lg~~~~A~~~~~~al~ 376 (414)
..|++++|+..|..+++
T Consensus 20 ~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 20 EAGDYEEALELYKKAIE 36 (77)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 34455544444444443
No 429
>KOG0111|consensus
Probab=73.38 E-value=1.5 Score=38.35 Aligned_cols=21 Identities=67% Similarity=1.102 Sum_probs=18.8
Q ss_pred cccchhcchhhhHhhcCCCCc
Q psy793 107 ISQYFHRIIPQFMIQGGDITN 127 (414)
Q Consensus 107 ~~~~f~~~~~~~~~~~g~~~~ 127 (414)
....|||++|.||-||||+++
T Consensus 182 kgssfhriip~fmcqggdftn 202 (298)
T KOG0111|consen 182 KGSSFHRIIPKFMCQGGDFTN 202 (298)
T ss_pred cccchhhhhhhhhccCCcccc
Confidence 478899999999999999883
No 430
>PF15469 Sec5: Exocyst complex component Sec5
Probab=73.35 E-value=57 Score=28.07 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy793 362 NNFEQGLQDYEQALDLLPNDQQILKEI 388 (414)
Q Consensus 362 g~~~~A~~~~~~al~l~P~~~~~~~~l 388 (414)
...++........++|+|....++..+
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 455666666677777777655555443
No 431
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=73.17 E-value=57 Score=32.65 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793 345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 377 (414)
Q Consensus 345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 377 (414)
.++..-|-++|...+.+|+++-|..+|+++-.+
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~ 376 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKAKDF 376 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc
Confidence 347779999999999999999999999997543
No 432
>KOG2041|consensus
Probab=73.07 E-value=1e+02 Score=32.44 Aligned_cols=32 Identities=9% Similarity=0.000 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793 310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 341 (414)
Q Consensus 310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 341 (414)
+.....++.++|..+..+.+|.+|.++|.+.-
T Consensus 792 D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 792 DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44556788889999999999999988877653
No 433
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=72.74 E-value=21 Score=35.59 Aligned_cols=102 Identities=15% Similarity=0.095 Sum_probs=75.2
Q ss_pred HhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCH
Q psy793 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNV 348 (414)
Q Consensus 269 ~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~ 348 (414)
..-......|+.-.|......+|+. .|..+..-.-++..+..+|.|+.|+.+..-+-..=....
T Consensus 294 ~si~k~~~~gd~~aas~~~~~~lr~----------------~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~ 357 (831)
T PRK15180 294 LSITKQLADGDIIAASQQLFAALRN----------------QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD 357 (831)
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHh----------------CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc
Confidence 3334456678888888888888876 455555666778899999999999988776665555556
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy793 349 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 386 (414)
Q Consensus 349 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~ 386 (414)
++.--+-..+..++++++|.....-.+.-.-+++++..
T Consensus 358 ~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~ 395 (831)
T PRK15180 358 STLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLT 395 (831)
T ss_pred hHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhhee
Confidence 66666677889999999999888877766666665543
No 434
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=72.14 E-value=21 Score=33.85 Aligned_cols=77 Identities=13% Similarity=0.069 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793 315 AALLNMAAVQLKFKAYKRAINLCDDILLME--PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV 391 (414)
Q Consensus 315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 391 (414)
.+-.|+|.+.-+..=...++...+.+..-. ..+--.+-.+|..+.++|+.++|...|++++.+.++..+....+.++
T Consensus 330 vV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~ 408 (415)
T COG4941 330 VVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRL 408 (415)
T ss_pred eEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 355788888877777777777666555431 22344566789999999999999999999999999887766655544
No 435
>KOG0985|consensus
Probab=71.62 E-value=37 Score=37.18 Aligned_cols=106 Identities=15% Similarity=0.194 Sum_probs=74.6
Q ss_pred HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC
Q psy793 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN 346 (414)
Q Consensus 267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~ 346 (414)
+...|+.+|..+.|+.|.-+|.. +.-|..+|..+..+|+|+.|....++|=...-.
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~------------------------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktW 1252 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSN------------------------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTW 1252 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHH------------------------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHH
Confidence 44578888998998888877743 234567889999999999999988887433110
Q ss_pred -------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793 347 -------------------------NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR 396 (414)
Q Consensus 347 -------------------------~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 396 (414)
.+.-+--+-.-|...|-|++-+..++.++-+.-.+-.....|+.++.+-+
T Consensus 1253 K~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk 1327 (1666)
T KOG0985|consen 1253 KEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK 1327 (1666)
T ss_pred HHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC
Confidence 01122223344667788899999999998887777677777777776543
No 436
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=71.28 E-value=43 Score=32.58 Aligned_cols=118 Identities=14% Similarity=0.186 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhhhHHhhh---------cCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhC
Q psy793 259 QMEDVIRTIKNSGNEYFKL---------NRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA 329 (414)
Q Consensus 259 ~~~~~a~~~~~~G~~~~~~---------~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~ 329 (414)
-..+.+..+++.|-.+... ...+.|..+|++|-.++.............++++....++.+++.+.-+..-
T Consensus 102 ~~fE~a~vL~N~aa~~s~~a~~~~~~~~~~~k~A~~~fq~AAg~f~~l~~~~~~~~s~Dl~~~~l~~l~~l~lAqAQe~~ 181 (377)
T PF03097_consen 102 LAFEKACVLFNIAALYSQLAASQNRSTDEGLKEACNYFQRAAGIFQYLRENFKDSPSPDLSPEVLSALSNLMLAQAQECF 181 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHHHHHHHHHSSS-SSGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 3456677777776666543 3577889999999887764443222222224566666666666555444333
Q ss_pred HHHHH-----------------HHHHHHHhc----------CCCC------------HHHHHHHHHHHHHcCCHHHHHHH
Q psy793 330 YKRAI-----------------NLCDDILLM----------EPNN------------VKALFRRGRAQVSMNNFEQGLQD 370 (414)
Q Consensus 330 ~~~A~-----------------~~~~~al~~----------~p~~------------~~a~~~~g~~~~~lg~~~~A~~~ 370 (414)
|.+|+ ..|+.|... .+.. +.++|..|..+...+++-+|+..
T Consensus 182 ~~ka~~~~~~~~liAKLa~~~~~~Y~~a~~~l~~~~~~~~~~~~w~~~~~~K~~~~~A~A~y~~A~~~~~~~~~G~aia~ 261 (377)
T PF03097_consen 182 YEKAIADKKKPSLIAKLAAQASELYDEAHEALQSSPLSESIPKDWRSYVQVKSAYYRALAHYHQALAAEEAKKYGEAIAR 261 (377)
T ss_dssp HHHHHHTTG-HHHHHHHHHHHHHHHHHHHHHHTTCHHHHCSHCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHH
Confidence 33332 233333322 1111 34777778888888888888777
Q ss_pred HHHHHh
Q psy793 371 YEQALD 376 (414)
Q Consensus 371 ~~~al~ 376 (414)
++.|..
T Consensus 262 L~~A~~ 267 (377)
T PF03097_consen 262 LRRAEE 267 (377)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777765
No 437
>KOG4459|consensus
Probab=70.91 E-value=38 Score=33.45 Aligned_cols=120 Identities=14% Similarity=0.148 Sum_probs=76.9
Q ss_pred HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCC--c----H--------HHHHhhH----HHHHHHHHHHHHHHHH
Q psy793 265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQ--S----K--------TQQKHFR----SYYTAALLNMAAVQLK 326 (414)
Q Consensus 265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~--~----~--------~~~~~~~----~~~~~~~~nla~~~~~ 326 (414)
...+..|...+...+|..++..+..||+..-....+. . . +...... -....-+..+
T Consensus 32 ~~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~Cr~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~le~------ 105 (471)
T KOG4459|consen 32 ELAYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAFCRTNCEGPAQLPEPEAGSASFGGLYLAIFGHLLER------ 105 (471)
T ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHhhccCcccCCCchhcccccchhHHHHHHHHHHH------
Confidence 3467788899999999999999999998753322110 0 0 0000000 0111122222
Q ss_pred hhCHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy793 327 FKAYKRAINLCDDILLMEPNN----------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ 394 (414)
Q Consensus 327 l~~~~~A~~~~~~al~~~p~~----------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 394 (414)
..++.-|...+.-.+.. -..|..+-.||++.|++..|++.-...+-.+|++..++.++.--+..
T Consensus 106 ----a~Cl~rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~ 179 (471)
T KOG4459|consen 106 ----AACLRRCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTM 179 (471)
T ss_pred ----HHHHHHHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhc
Confidence 33344444444333322 25677888999999999999999999999999999999888766533
No 438
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=70.88 E-value=1e+02 Score=33.23 Aligned_cols=96 Identities=8% Similarity=-0.010 Sum_probs=74.3
Q ss_pred HHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC-
Q psy793 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN- 346 (414)
Q Consensus 268 ~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~- 346 (414)
--.|.+...+++++.|++.-+.++..++... ....+.++.+++.+..-.|++.+|..+...+.++...
T Consensus 462 aL~a~val~~~~~e~a~~lar~al~~L~~~~-----------~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~ 530 (894)
T COG2909 462 ALRAQVALNRGDPEEAEDLARLALVQLPEAA-----------YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH 530 (894)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccccc-----------chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc
Confidence 3367778889999999999999999987666 5677889999999999999999999999999887321
Q ss_pred -----CHHHHHHHHHHHHHcC--CHHHHHHHHHHH
Q psy793 347 -----NVKALFRRGRAQVSMN--NFEQGLQDYEQA 374 (414)
Q Consensus 347 -----~~~a~~~~g~~~~~lg--~~~~A~~~~~~a 374 (414)
...+.+-.+.++..+| .+.+....|...
T Consensus 531 ~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~ 565 (894)
T COG2909 531 DVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLI 565 (894)
T ss_pred ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2355667788888999 344444444433
No 439
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=70.71 E-value=18 Score=32.78 Aligned_cols=56 Identities=14% Similarity=0.125 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHh
Q psy793 279 RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK-FKAYKRAINLCDDILL 342 (414)
Q Consensus 279 ~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~A~~~~~~al~ 342 (414)
--+.|...|++|+.+....- ...+|....+.+|.+..|.. +++.++|+..+++|+.
T Consensus 141 ~~~~a~~aY~~A~~~a~~~L--------~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 141 AAEKALEAYEEALEIAKKEL--------PPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHS--------CTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHhccc--------CCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 34788899999999865421 12268888888888886644 8899999988888763
No 440
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.29 E-value=40 Score=24.75 Aligned_cols=60 Identities=10% Similarity=0.033 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793 318 LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALF---RRGRAQVSMNNFEQGLQDYEQALDL 377 (414)
Q Consensus 318 ~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~---~~g~~~~~lg~~~~A~~~~~~al~l 377 (414)
...|.=++...+.++|+...+++|+..++....+- .+..+|...|+|.+++++.-+-+++
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455666777777777777776665554332 3445666677777776655444433
No 441
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=69.13 E-value=1e+02 Score=29.56 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhhhHHhh----------hcCHHHHHHHHHHHHHHHHhhccCCcHH----HHHhhHHHHHHHHHHHHHHHH
Q psy793 260 MEDVIRTIKNSGNEYFK----------LNRMHDAQRKYKKAVRYIKWYNQSQSKT----QQKHFRSYYTAALLNMAAVQL 325 (414)
Q Consensus 260 ~~~~a~~~~~~G~~~~~----------~~~~~~A~~~y~~Al~~~~~~~~~~~~~----~~~~~~~~~~~~~~nla~~~~ 325 (414)
..+.+..+++.|-.+.. ....+.|..++++|.-+++......... ...++.+....++..++.+.-
T Consensus 107 ~fE~~~vLfn~aa~~s~~a~~~~~~~~~~~~k~A~~~fq~AAG~F~~l~~~~~~~~~~~~~~Dl~~~~l~~l~~l~LAqA 186 (345)
T cd09034 107 RYELLSILFNLAALASQLANEKLITGSEEDLKQAIKSLQKAAGYFEYLKEHVLPLPPDELPVDLTEAVLSALSLIMLAQA 186 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccCCHHHHHHHHHHHHHHH
Confidence 45566666666655543 2457888888988887775444322111 113445555555555554443
Q ss_pred HhhCHHHH------------------HHHHHHHHhc----CCC--------------------CHHHHHHHHHHHHHcCC
Q psy793 326 KFKAYKRA------------------INLCDDILLM----EPN--------------------NVKALFRRGRAQVSMNN 363 (414)
Q Consensus 326 ~l~~~~~A------------------~~~~~~al~~----~p~--------------------~~~a~~~~g~~~~~lg~ 363 (414)
+.--|.+| ...|+.|+.. +.. .+.++|+.|..+...++
T Consensus 187 Qe~~~~ka~~~~~~~~~liakLa~~~~~~y~~A~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~a~a~~~~a~~~~e~~~ 266 (345)
T cd09034 187 QECFLLKAEEDKKAKLSLLARLACEAAKYYEEALKCLSGVDLETIKNIPKKWLLFLKWKKCIFKALAYYYHGLKLDEANK 266 (345)
T ss_pred HHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 33323222 2333333322 110 13466777777777788
Q ss_pred HHHHHHHHHHHHhh
Q psy793 364 FEQGLQDYEQALDL 377 (414)
Q Consensus 364 ~~~A~~~~~~al~l 377 (414)
+-+|+..++.|...
T Consensus 267 ~G~aia~L~~A~~~ 280 (345)
T cd09034 267 IGEAIARLQAALEL 280 (345)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888763
No 442
>KOG4563|consensus
Probab=68.68 E-value=30 Score=33.14 Aligned_cols=69 Identities=13% Similarity=0.056 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHH
Q psy793 259 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAIN 335 (414)
Q Consensus 259 ~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~ 335 (414)
+..+.+..+...|+.++.+++|+.|...|..|..+..... -...-....+++..|.+++++.++..++-
T Consensus 36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~--------Ge~~~e~~eal~~YGkslLela~~e~~VL 104 (400)
T KOG4563|consen 36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIY--------GEKHLETFEALFLYGKSLLELAKEESQVL 104 (400)
T ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566788899999999999999999999999999854222 11123345566677777877777665543
No 443
>KOG2041|consensus
Probab=67.30 E-value=32 Score=35.92 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=16.9
Q ss_pred HHHHHhhhHHhhhcCHHHHHHHHHHHH
Q psy793 265 RTIKNSGNEYFKLNRMHDAQRKYKKAV 291 (414)
Q Consensus 265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al 291 (414)
.+.++.|..+.....|++|.++|.+.-
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345556666666677777777765543
No 444
>KOG0890|consensus
Probab=66.65 E-value=41 Score=40.06 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=79.1
Q ss_pred HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL 341 (414)
Q Consensus 262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 341 (414)
+.++.+.+.|...-+.|.++.|....-+|.+. ....++..+|..+.+.|+-..|+..+++.+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~------------------r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l 1729 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKES------------------RLPEIVLERAKLLWQTGDELNALSVLQEIL 1729 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc------------------ccchHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34566777777777888888887777666654 256788889999999999999999999999
Q ss_pred hcC-CC----------C------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy793 342 LME-PN----------N------VKALFRRGRAQVSMNNF--EQGLQDYEQALDLLPNDQQILKEIAFVRKQM 395 (414)
Q Consensus 342 ~~~-p~----------~------~~a~~~~g~~~~~lg~~--~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 395 (414)
+.+ |+ . .++.+..+.-....+++ .+-++.|+.+.++.|....-+..++.-+.++
T Consensus 1730 ~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kl 1802 (2382)
T KOG0890|consen 1730 SKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKL 1802 (2382)
T ss_pred HhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHH
Confidence 654 22 1 12333333333344443 4567889999999997766666666444433
No 445
>KOG3783|consensus
Probab=65.38 E-value=67 Score=32.57 Aligned_cols=67 Identities=7% Similarity=-0.069 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHhc------CCC-CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCH
Q psy793 316 ALLNMAAVQLKFKAYKRAINLCDDILLM------EPN-NVKALFRRGRAQVSMNN-FEQGLQDYEQALDLLPNDQ 382 (414)
Q Consensus 316 ~~~nla~~~~~l~~~~~A~~~~~~al~~------~p~-~~~a~~~~g~~~~~lg~-~~~A~~~~~~al~l~P~~~ 382 (414)
-++-+|.|+..+|+-..|..++..+++- ++. .+-|+|-+|..+..++. ..+|.+.+.+|-+...++.
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence 4667899999999999999999888733 121 25799999999999999 9999999999999875543
No 446
>KOG1914|consensus
Probab=65.34 E-value=51 Score=33.47 Aligned_cols=82 Identities=10% Similarity=0.078 Sum_probs=66.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy793 304 TQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ 383 (414)
Q Consensus 304 ~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~ 383 (414)
.+..+..|.++..|+-+-.-+... .++++.+.|++.+..-|..+.+|--.....++.++|+.-.+.|.+||..--+ -+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence 445555888999998876665544 9999999999999999999999999999999999999999999999875432 44
Q ss_pred HHHH
Q psy793 384 ILKE 387 (414)
Q Consensus 384 ~~~~ 387 (414)
.|..
T Consensus 88 LW~l 91 (656)
T KOG1914|consen 88 LWKL 91 (656)
T ss_pred HHHH
Confidence 4433
No 447
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=65.16 E-value=40 Score=33.64 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793 350 ALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL 401 (414)
Q Consensus 350 a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~ 401 (414)
....+|.--+..|+|.-+.+.+.+++--+|+|..++..++.++.+++-+.|.
T Consensus 454 rVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~ 505 (655)
T COG2015 454 RVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAES 505 (655)
T ss_pred HHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhcc
Confidence 4456777888999999999999999999999999999999999999877654
No 448
>KOG1914|consensus
Probab=63.85 E-value=39 Score=34.29 Aligned_cols=70 Identities=14% Similarity=0.216 Sum_probs=59.6
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy793 338 DDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARM 409 (414)
Q Consensus 338 ~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~ 409 (414)
++-++.+|.+..+|+.+-.-+..+ .++++...|++.+..-|..+.++.....-..+.++.+..|+ .+++.
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEk-LF~RC 79 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEK-LFSRC 79 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHH-HHHHH
Confidence 677899999999999998877666 99999999999999999999999988888777777777776 44443
No 449
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=61.80 E-value=1.6e+02 Score=28.57 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhhHHhhhc---------CHHHHHHHHHHHHHHHHhh
Q psy793 259 QMEDVIRTIKNSGNEYFKLN---------RMHDAQRKYKKAVRYIKWY 297 (414)
Q Consensus 259 ~~~~~a~~~~~~G~~~~~~~---------~~~~A~~~y~~Al~~~~~~ 297 (414)
-..+.+..+++.|-.+.+.+ ..+.|..+|++|--++...
T Consensus 101 l~fEkasVLFNigAl~Sq~aa~~~r~~~eglK~A~~~Fq~AAG~F~~l 148 (350)
T cd09244 101 VAFEKASVLFNIGALYTQIGAKQDRTTEEGIEAAVDAFQRAAGAFNYL 148 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH
Confidence 35577888888887775433 3678888888887766543
No 450
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=61.65 E-value=29 Score=24.45 Aligned_cols=25 Identities=20% Similarity=0.490 Sum_probs=13.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q psy793 352 FRRGRAQVSMNNFEQGLQDYEQALD 376 (414)
Q Consensus 352 ~~~g~~~~~lg~~~~A~~~~~~al~ 376 (414)
...|.-.-..|++++|+..|.++++
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444445666666666665554
No 451
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=60.39 E-value=26 Score=20.22 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy793 333 AINLCDDILLMEPNNVKALFRRGRAQV 359 (414)
Q Consensus 333 A~~~~~~al~~~p~~~~a~~~~g~~~~ 359 (414)
.++.+.++|..+|.|..+|..|-.+..
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~ 28 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLK 28 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHH
Confidence 355666666777777666655544443
No 452
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=60.26 E-value=47 Score=23.83 Aligned_cols=15 Identities=47% Similarity=0.857 Sum_probs=7.3
Q ss_pred CCHHHHHHHHHHHHh
Q psy793 362 NNFEQGLQDYEQALD 376 (414)
Q Consensus 362 g~~~~A~~~~~~al~ 376 (414)
|++++|+..|..+++
T Consensus 20 g~~~~Al~~Y~~a~e 34 (75)
T cd02656 20 GNYEEALELYKEALD 34 (75)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555544444443
No 453
>KOG1464|consensus
Probab=60.08 E-value=25 Score=32.44 Aligned_cols=51 Identities=24% Similarity=0.329 Sum_probs=42.4
Q ss_pred HhhCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy793 326 KFKAYKRAINLCDDILLMEPNN----VKALFRRGRAQVSMNNFEQGLQDYEQALD 376 (414)
Q Consensus 326 ~l~~~~~A~~~~~~al~~~p~~----~~a~~~~g~~~~~lg~~~~A~~~~~~al~ 376 (414)
+..+.++|+..+++++++.+.- -+|+-.+-.+++++++|++-+..|++.+.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3457899999999999998754 46888888899999999998888887664
No 454
>KOG3616|consensus
Probab=59.13 E-value=88 Score=33.13 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=27.4
Q ss_pred HHHhhCHHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHH
Q psy793 324 QLKFKAYKRAINLCDDILLMEPNNVKALF-RRGRAQVSMNNFEQGLQDYEQ 373 (414)
Q Consensus 324 ~~~l~~~~~A~~~~~~al~~~p~~~~a~~-~~g~~~~~lg~~~~A~~~~~~ 373 (414)
-+..++|.+|+...+..-..+ ....|| -.|.-|..+|+|+-|.+.|-+
T Consensus 742 ai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTE 790 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHh
Confidence 344566777777666544332 222333 456667777777777766544
No 455
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=58.70 E-value=24 Score=21.14 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=18.0
Q ss_pred HHHHHHH--HHHHHcC-----CHHHHHHHHHHHHhh
Q psy793 349 KALFRRG--RAQVSMN-----NFEQGLQDYEQALDL 377 (414)
Q Consensus 349 ~a~~~~g--~~~~~lg-----~~~~A~~~~~~al~l 377 (414)
.|.+++| .++..-. ++++|+..|++|.+.
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 5667777 4433322 467788888777664
No 456
>PF12854 PPR_1: PPR repeat
Probab=58.69 E-value=28 Score=20.68 Aligned_cols=26 Identities=4% Similarity=0.074 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy793 347 NVKALFRRGRAQVSMNNFEQGLQDYE 372 (414)
Q Consensus 347 ~~~a~~~~g~~~~~lg~~~~A~~~~~ 372 (414)
+...|-.+-.+|.+.|+.++|.+.|+
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44455555556666666666665554
No 457
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=58.63 E-value=65 Score=23.45 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=12.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q psy793 353 RRGRAQVSMNNFEQGLQDYEQALD 376 (414)
Q Consensus 353 ~~g~~~~~lg~~~~A~~~~~~al~ 376 (414)
++|.-+=..|+|++|+..|+.+++
T Consensus 11 ~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 11 RLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 333334445566666555555554
No 458
>KOG0739|consensus
Probab=58.29 E-value=49 Score=31.10 Aligned_cols=35 Identities=14% Similarity=0.197 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHH
Q psy793 260 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYI 294 (414)
Q Consensus 260 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~ 294 (414)
.+..+-.+-..+...-+.++|++|+.+|+.|++++
T Consensus 6 ~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF 40 (439)
T KOG0739|consen 6 FLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYF 40 (439)
T ss_pred HHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHH
Confidence 34456666677777778899999999999999884
No 459
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=58.20 E-value=47 Score=33.25 Aligned_cols=28 Identities=7% Similarity=-0.038 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793 314 TAALLNMAAVQLKFKAYKRAINLCDDIL 341 (414)
Q Consensus 314 ~~~~~nla~~~~~l~~~~~A~~~~~~al 341 (414)
...|-.+|...+..|+++-|.++++++=
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 3477888888888888888888877763
No 460
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=57.85 E-value=50 Score=26.59 Aligned_cols=83 Identities=14% Similarity=0.134 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----h
Q psy793 317 LLNMAAVQLKFKAYKRAINLCDDILLMEPN---------------NVKALFRRGRAQVSMNNFEQGLQDYEQALD----L 377 (414)
Q Consensus 317 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~---------------~~~a~~~~g~~~~~lg~~~~A~~~~~~al~----l 377 (414)
+.++|...++.+++-.++-.|++|+.+..+ .+-.-.++|.-+..+|+-+=.+++++-|-+ +
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 467788888899999999999998865211 123557899999999999999999987765 4
Q ss_pred CCCC-----HHHHHHHHHHHHHHHHHH
Q psy793 378 LPND-----QQILKEIAFVRKQMRHHL 399 (414)
Q Consensus 378 ~P~~-----~~~~~~l~~~~~~~~~~~ 399 (414)
-|+- ......|+-+...+-+..
T Consensus 84 iPQCp~~~C~afi~sLGCCk~ALl~F~ 110 (140)
T PF10952_consen 84 IPQCPNTECEAFIDSLGCCKKALLDFM 110 (140)
T ss_pred ccCCCCcchHHHHHhhhccHHHHHHHH
Confidence 4543 444666666665554443
No 461
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=57.16 E-value=1.9e+02 Score=28.00 Aligned_cols=118 Identities=12% Similarity=0.163 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhhhHHhhh------------cCHHHHHHHHHHHHHHHHhhccCCcHH------HHHhhHHHHHHHHHHH
Q psy793 259 QMEDVIRTIKNSGNEYFKL------------NRMHDAQRKYKKAVRYIKWYNQSQSKT------QQKHFRSYYTAALLNM 320 (414)
Q Consensus 259 ~~~~~a~~~~~~G~~~~~~------------~~~~~A~~~y~~Al~~~~~~~~~~~~~------~~~~~~~~~~~~~~nl 320 (414)
-..+.+..+++.|-.+.+. ...+.|...|++|--++.......... .-.++.+....++.++
T Consensus 104 l~fEk~sVLfNigal~s~~As~~~~~~~~s~e~~K~A~~~fq~AAG~F~~l~e~~l~~l~~~~~p~~DL~~~~L~aL~~l 183 (353)
T cd09243 104 AIFELASMLFNVALWYTKHASKLAGKEDITEDEAKDVHKSLRTAAGIFQFVKENYIPKLIEPAEKGSDLDPRVLEAYINQ 183 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCHHHHHHHHHH
Confidence 4566777888888777431 226677788888877665433221100 1234445555555555
Q ss_pred HHHHHHhhCHHHHH-----------------HHHHHHHhc----CC----CC------------HHHHHHHHHHHHHcCC
Q psy793 321 AAVQLKFKAYKRAI-----------------NLCDDILLM----EP----NN------------VKALFRRGRAQVSMNN 363 (414)
Q Consensus 321 a~~~~~l~~~~~A~-----------------~~~~~al~~----~p----~~------------~~a~~~~g~~~~~lg~ 363 (414)
+.+.-+---+.+|+ ++|++|... .+ .+ +.+||+.|..+...++
T Consensus 184 mLAQAQE~~~~KAi~~k~k~sliaKLA~q~a~~Y~~A~~~l~~~~~~i~~~W~~~v~~K~~~f~A~A~y~~a~~l~e~~k 263 (353)
T cd09243 184 CTAEAQEVTVARAIELKHNAGLISALAYETAKLFQKADDSLSSLDPEYSGKWRKYLQLKSVFYLAYAYCYHGETLLAKDK 263 (353)
T ss_pred HHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcch
Confidence 55444333333332 234444322 11 11 3467777877777788
Q ss_pred HHHHHHHHHHHHh
Q psy793 364 FEQGLQDYEQALD 376 (414)
Q Consensus 364 ~~~A~~~~~~al~ 376 (414)
+-+|+..++.|.+
T Consensus 264 ~GeaIa~L~~A~~ 276 (353)
T cd09243 264 CGEAIRSLQESEK 276 (353)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887765
No 462
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=56.60 E-value=11 Score=35.33 Aligned_cols=77 Identities=6% Similarity=0.025 Sum_probs=57.4
Q ss_pred HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHH-HHHHHhhCHHHHHHHHHHHHhcCC
Q psy793 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMA-AVQLKFKAYKRAINLCDDILLMEP 345 (414)
Q Consensus 267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla-~~~~~l~~~~~A~~~~~~al~~~p 345 (414)
+..-++-.-+.+.|..-...|.+++.. .|..+.+|..-| .-+...++++.|...+.++|.++|
T Consensus 110 w~~y~~Y~~k~k~y~~~~nI~~~~l~k----------------hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~ 173 (435)
T COG5191 110 WSQYAAYVIKKKMYGEMKNIFAECLTK----------------HPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS 173 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc----------------CCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence 344444455666788888889999988 788888887633 346678899999999999999999
Q ss_pred CCHHHH---HHHHHHHH
Q psy793 346 NNVKAL---FRRGRAQV 359 (414)
Q Consensus 346 ~~~~a~---~~~g~~~~ 359 (414)
++++.| +++-..|.
T Consensus 174 ~~p~iw~eyfr~El~yi 190 (435)
T COG5191 174 RSPRIWIEYFRMELMYI 190 (435)
T ss_pred CCchHHHHHHHHHHHHH
Confidence 998755 44444444
No 463
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=55.64 E-value=30 Score=20.20 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHhh
Q psy793 349 KALFRRGRAQVSM----NNFEQGLQDYEQALDL 377 (414)
Q Consensus 349 ~a~~~~g~~~~~l----g~~~~A~~~~~~al~l 377 (414)
.+.+.+|.+|..= .+.++|+..|+++.+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 4566666666532 3677777777777654
No 464
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=55.50 E-value=35 Score=26.93 Aligned_cols=41 Identities=12% Similarity=0.187 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHH
Q psy793 255 VQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIK 295 (414)
Q Consensus 255 ~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~ 295 (414)
.++....+.+..+...|..+++.|+.+.|-..|.+.+.+++
T Consensus 29 ~~l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ 69 (115)
T PF08969_consen 29 IPLKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLVE 69 (115)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34777899999999999999999999999999999999984
No 465
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=54.99 E-value=52 Score=32.71 Aligned_cols=64 Identities=9% Similarity=0.096 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy793 310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD 376 (414)
Q Consensus 310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~ 376 (414)
-+....+|+.-...+...++-+.|+....+++.+.|. .+++++.+|....+-++-..+|+++.+
T Consensus 298 ~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q 361 (660)
T COG5107 298 FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQ 361 (660)
T ss_pred hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHH
Confidence 6777788999999999999999999999999988886 778899998888877777777777654
No 466
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=54.54 E-value=40 Score=30.17 Aligned_cols=64 Identities=11% Similarity=0.092 Sum_probs=52.1
Q ss_pred hhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHH
Q psy793 270 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVK 349 (414)
Q Consensus 270 ~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~ 349 (414)
....+++.+...+|+.....-++. +|.+..+...+=..+.-.|+|++|+..|+-+-++.|+..+
T Consensus 7 t~seLL~~~sL~dai~~a~~qVka----------------kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKA----------------KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhc----------------CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 344677888888998888877777 6777777666777888899999999999999999998753
No 467
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=54.29 E-value=1.2e+02 Score=29.17 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793 350 ALFRRGRAQVSMNNFEQGLQDYEQALDL 377 (414)
Q Consensus 350 a~~~~g~~~~~lg~~~~A~~~~~~al~l 377 (414)
++|+.|..+...+++-+|+..++.|...
T Consensus 246 A~y~~a~~~~~~~k~GeaIa~L~~A~~~ 273 (348)
T cd09242 246 AAYYHALALEAAGKYGEAIAYLTQAESI 273 (348)
T ss_pred HHHHHHHHhHHhccHHHHHHHHHHHHHH
Confidence 5566676677777888888888888763
No 468
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=54.11 E-value=83 Score=34.71 Aligned_cols=67 Identities=16% Similarity=0.084 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy793 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVK-------ALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 384 (414)
Q Consensus 316 ~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~-------a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~ 384 (414)
=|..-|.+|.++++|++-++++.-|++..|..+. .-||+-.+.+. .-..|....--++...|.....
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 627 (932)
T PRK13184 554 EYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK--HRREALVFMLLALWIAPEKISS 627 (932)
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCcccccc
Confidence 4888999999999999999999999999988765 33555555443 2345667777788888876433
No 469
>KOG0890|consensus
Probab=54.04 E-value=4.1e+02 Score=32.46 Aligned_cols=68 Identities=13% Similarity=0.026 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy793 309 FRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL 378 (414)
Q Consensus 309 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 378 (414)
.+.....+|.+.|....+.|.++.|..+.-+|.+.. -++++.-+|+.+...|+-..|+..+++.++++
T Consensus 1665 ~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1665 LKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 366778999999999999999999999999998887 57889999999999999999999999999776
No 470
>cd09248 BRO1_Rhophilin_1 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-1. This subfamily contains the Bro1-like domain of the RhoA-binding protein, Rhophilin-1. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. The Drosophila knockout of the Rhophilin-1 is embryonic lethal, suggesting an essential role i
Probab=53.97 E-value=2.2e+02 Score=27.84 Aligned_cols=76 Identities=9% Similarity=0.053 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhhHHhhhcC---------HHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhC
Q psy793 259 QMEDVIRTIKNSGNEYFKLNR---------MHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA 329 (414)
Q Consensus 259 ~~~~~a~~~~~~G~~~~~~~~---------~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~ 329 (414)
-..+.+..+++.|-.+...+- .+.|..+|+.|--++..............+.+....++.++..+.-+-.-
T Consensus 101 l~FEKasVLFNigAL~Sqlaa~~~r~t~eGlK~A~~~FQ~AAG~F~~L~e~~~~~Ps~Dms~~~L~~L~~LMLAQAQEC~ 180 (384)
T cd09248 101 LAFEKGSVLFNIGALHTQIGARQDRSCTEGTRRAIDAFQRAAGAFSLLRENFSNAPSPDMSTASLSMLEQLMVAQAQECI 180 (384)
T ss_pred HHHHHHHHHHhHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 356778889998888866553 68888889888776644332211111223344445555555444444444
Q ss_pred HHHHH
Q psy793 330 YKRAI 334 (414)
Q Consensus 330 ~~~A~ 334 (414)
|++|+
T Consensus 181 ~eKai 185 (384)
T cd09248 181 FEGLL 185 (384)
T ss_pred HHHHH
Confidence 44444
No 471
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=53.77 E-value=1.9e+02 Score=28.57 Aligned_cols=102 Identities=11% Similarity=-0.024 Sum_probs=64.1
Q ss_pred HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhC--------------HH
Q psy793 266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA--------------YK 331 (414)
Q Consensus 266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~--------------~~ 331 (414)
.++..|..+|-.++|+.|...|..+..-+.... ..-....++--.|.|++.++. ++
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dk----------aw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le 279 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDK----------AWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLE 279 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhch----------hHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHH
Confidence 478899999999999999999988887542111 011223445555566666553 33
Q ss_pred HHHHHHHHH----HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793 332 RAINLCDDI----LLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 377 (414)
Q Consensus 332 ~A~~~~~~a----l~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 377 (414)
.|+..|.++ .........+.+-.+.++...+.+.+|...+-+....
T Consensus 280 ~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 280 NAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 444444442 1122233456666777888889988877777666655
No 472
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=53.45 E-value=85 Score=22.84 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhhCCCCHH
Q psy793 366 QGLQDYEQALDLLPNDQQ 383 (414)
Q Consensus 366 ~A~~~~~~al~l~P~~~~ 383 (414)
+|+..|..+++..|+...
T Consensus 31 ~aie~l~~~lk~e~d~~~ 48 (77)
T cd02683 31 EGIDLLMQVLKGTKDEAK 48 (77)
T ss_pred HHHHHHHHHHhhCCCHHH
Confidence 344444445556665443
No 473
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=52.71 E-value=23 Score=19.77 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793 317 LLNMAAVQLKFKAYKRAINLCDDIL 341 (414)
Q Consensus 317 ~~nla~~~~~l~~~~~A~~~~~~al 341 (414)
|..+-.+|.+.+++++|.+.+++-.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 4445555666666666666555543
No 474
>PF12854 PPR_1: PPR repeat
Probab=52.45 E-value=29 Score=20.58 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHH
Q psy793 314 TAALLNMAAVQLKFKAYKRAINLCDD 339 (414)
Q Consensus 314 ~~~~~nla~~~~~l~~~~~A~~~~~~ 339 (414)
...|.-+-.+|.+.|+.++|++.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45678888999999999999998764
No 475
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.37 E-value=2.2e+02 Score=27.34 Aligned_cols=113 Identities=12% Similarity=0.054 Sum_probs=59.3
Q ss_pred HHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHH-----HHHHHHHHHHHHHhhCHHHHHH
Q psy793 261 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYY-----TAALLNMAAVQLKFKAYKRAIN 335 (414)
Q Consensus 261 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~-----~~~~~nla~~~~~l~~~~~A~~ 335 (414)
.+......-+|-.|+...+++.|.-.+++|.+.-+....-..++-......++ ...-.+++. ..++++
T Consensus 122 YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ae-------~s~~i~ 194 (449)
T COG3014 122 YEGVLINYYKALNYMLLNDSAKARVEFNRANERQRRAKEFYYEEVQKAIKEIDSSKHNINMERSRAE-------VSEILN 194 (449)
T ss_pred HHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHH-------HHHHHH
Confidence 44566667788899999999999999999887632111000000000000000 000111111 111111
Q ss_pred --HHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy793 336 --LCDDILLM----EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 380 (414)
Q Consensus 336 --~~~~al~~----~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 380 (414)
+..-+++. +=.++.+-|+.|..+...+++-++...+..++-+.|+
T Consensus 195 n~Y~ny~~~yea~~~l~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd 245 (449)
T COG3014 195 NTYSNYLDKYEAYQGLLNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQD 245 (449)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHhcccCccHhHHHHHHHHHhccCch
Confidence 00001111 2235667777888887778888888888888877776
No 476
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=52.30 E-value=1.2e+02 Score=24.33 Aligned_cols=85 Identities=8% Similarity=0.055 Sum_probs=55.0
Q ss_pred cCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh--cCCCCHHHHHHHH
Q psy793 278 NRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL--MEPNNVKALFRRG 355 (414)
Q Consensus 278 ~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~--~~p~~~~a~~~~g 355 (414)
+.-..-...++++++.+.....- ..++.++.+|...|... . .+.+.+..... +--..+.-|-..|
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y-------~nD~RylkiWi~ya~~~----~--~~~~if~~l~~~~IG~~~A~fY~~wA 106 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERY-------KNDERYLKIWIKYADLS----S--DPREIFKFLYSKGIGTKLALFYEEWA 106 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGG-------TT-HHHHHHHHHHHTTB----S--HHHHHHHHHHHHTTSTTBHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhh-------cCCHHHHHHHHHHHHHc----c--CHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 33344456677777765432211 11566666666655532 2 77777777764 4456677788889
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q psy793 356 RAQVSMNNFEQGLQDYEQAL 375 (414)
Q Consensus 356 ~~~~~lg~~~~A~~~~~~al 375 (414)
..+...|++++|.+.|++++
T Consensus 107 ~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 107 EFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhhC
Confidence 99999999999999999875
No 477
>KOG2396|consensus
Probab=52.27 E-value=2.7e+02 Score=28.26 Aligned_cols=78 Identities=10% Similarity=0.025 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy793 330 YKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYA 407 (414)
Q Consensus 330 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~ 407 (414)
...-...|+.|+.--+.+.+.|.+...-..+.+.+.+-...|.+++.++|+++++|-..+.=.-.+...-+..|..+-
T Consensus 87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalfl 164 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFL 164 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHH
Confidence 445566788888888889999998877777777799999999999999999999887777666665555555554443
No 478
>KOG0889|consensus
Probab=51.96 E-value=1.8e+02 Score=36.66 Aligned_cols=87 Identities=16% Similarity=0.025 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHhhCCCCH
Q psy793 311 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSM----NN----FEQGLQDYEQALDLLPNDQ 382 (414)
Q Consensus 311 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l----g~----~~~A~~~~~~al~l~P~~~ 382 (414)
...+..+.-.|.-+.+++++++|-..+..|++++-..+|+|+.-|.-+... .. -..|+.+|-+|.... ++.
T Consensus 2809 ~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~-~~s 2887 (3550)
T KOG0889|consen 2809 RQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLY-NSS 2887 (3550)
T ss_pred HHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccc-cch
Confidence 455678888999999999999999999999999999999999888765543 11 245777777776665 345
Q ss_pred HHHHHHHHHHHHHHHH
Q psy793 383 QILKEIAFVRKQMRHH 398 (414)
Q Consensus 383 ~~~~~l~~~~~~~~~~ 398 (414)
.++..+++++--+.-.
T Consensus 2888 kaRk~iakvLwLls~d 2903 (3550)
T KOG0889|consen 2888 KARKLIAKVLWLLSFD 2903 (3550)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 5666777666554433
No 479
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=51.62 E-value=57 Score=25.40 Aligned_cols=36 Identities=11% Similarity=0.067 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHH
Q psy793 258 NQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRY 293 (414)
Q Consensus 258 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~ 293 (414)
....+.+......|-..+-.|+|..|.+...++-+.
T Consensus 53 ~rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 53 RRRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 345667888889999999999999999999999765
No 480
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=50.91 E-value=93 Score=22.54 Aligned_cols=46 Identities=13% Similarity=0.248 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy793 362 NNFEQGLQDYEQALDL-------LPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ 411 (414)
Q Consensus 362 g~~~~A~~~~~~al~l-------~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~ 411 (414)
|+|++|...|..+++. .++ +. ....+..++.++-...-+.+....+
T Consensus 20 ~~y~eA~~~Y~~~i~~~~~~~k~e~~-~~---~k~~ir~K~~eYl~RAE~i~~~~l~ 72 (75)
T cd02677 20 GDYEAAFEFYRAGVDLLLKGVQGDSS-PE---RREAVKRKIAEYLKRAEEILRLHLS 72 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccCCC-HH---HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6666666666666653 333 22 2344455555555555555554443
No 481
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=50.60 E-value=16 Score=30.26 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=25.1
Q ss_pred eeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEecc
Q psy793 25 GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQ 73 (414)
Q Consensus 25 G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~ 73 (414)
-.++.+|..|.||+||+-|.++-= |.+..+|-..-|
T Consensus 8 ~~~~A~l~~d~AP~Tcaa~~~~LP-------------~~~~~~HarwSG 43 (147)
T PF12903_consen 8 VSFTARLLDDKAPKTCAAFWEALP-------------LKGKVIHARWSG 43 (147)
T ss_dssp EEEEEEE-TTTSHHHHHHHHHH---------------EEEE-EE-SSSS
T ss_pred eEEEEEEcccCChHHHHHHHHhCC-------------CCCcEEEEEEEC
Confidence 478899999999999999998761 666666655444
No 482
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=49.78 E-value=1.1e+02 Score=31.27 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHHH
Q psy793 345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL------LPNDQQILKEIAFVRKQMR 396 (414)
Q Consensus 345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l------~P~~~~~~~~l~~~~~~~~ 396 (414)
-.....|..+|-.|++.++|.+|+..|-.|-+. .-+|.++.+.+-.|...+-
T Consensus 315 n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfleIAneLi 372 (618)
T PF05053_consen 315 NHHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSREDEEIYKEFLEIANELI 372 (618)
T ss_dssp T--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHHHHHHTHH
T ss_pred CCccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccHHHHHHHHHHHHHHHH
Confidence 346678889999999999999999999988764 2457888888777765443
No 483
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=49.71 E-value=63 Score=23.48 Aligned_cols=38 Identities=8% Similarity=0.203 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHH
Q psy793 257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYI 294 (414)
Q Consensus 257 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~ 294 (414)
.++..+.|..+.+.|..++++|++..|+.++.=|.-.+
T Consensus 28 a~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa~GwL 65 (75)
T PF04010_consen 28 AEEILEMAESYLEDGKYFLEKGDYVNALACFSYAHGWL 65 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 67888999999999999999999999999987776653
No 484
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=49.35 E-value=69 Score=29.19 Aligned_cols=55 Identities=16% Similarity=0.082 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHh
Q psy793 280 MHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK-FKAYKRAINLCDDILL 342 (414)
Q Consensus 280 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~A~~~~~~al~ 342 (414)
-+.|...|++|+++....- ...+|....+.+|.+..|.. +++.++|+...++|+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L--------~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAEL--------PPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccC--------CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4688999999998854311 11257888888888887665 5888888887777763
No 485
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=48.92 E-value=29 Score=33.72 Aligned_cols=33 Identities=9% Similarity=0.191 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhh
Q psy793 345 PNNVKALFRRGRAQVSMNN------------FEQGLQDYEQALDL 377 (414)
Q Consensus 345 p~~~~a~~~~g~~~~~lg~------------~~~A~~~~~~al~l 377 (414)
.+.+..|...|.++..+|+ |.+|.+.+++|=..
T Consensus 347 ~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 347 EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 3455666666666666665 56677777776544
No 486
>PF13041 PPR_2: PPR repeat family
Probab=48.62 E-value=71 Score=20.50 Aligned_cols=28 Identities=11% Similarity=0.119 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 316 ALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 316 ~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
.|.-+-.+|.+.+++++|.+.+++..+.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3444555556666666666666655543
No 487
>KOG2422|consensus
Probab=46.61 E-value=3.5e+02 Score=27.97 Aligned_cols=59 Identities=10% Similarity=0.194 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Q psy793 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPN-NVKALFRRGRAQV-SMNNFEQGLQDYEQA 374 (414)
Q Consensus 316 ~~~nla~~~~~l~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~-~lg~~~~A~~~~~~a 374 (414)
+++.-...+.+-|.|..|.++|+-.+.++|. ++-+...+-..|. +..+|+--+..++..
T Consensus 344 ~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 344 ALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444445667789999999999999999998 7766544444333 335666666655554
No 488
>KOG3807|consensus
Probab=46.58 E-value=2.7e+02 Score=26.66 Aligned_cols=58 Identities=10% Similarity=0.036 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCHHHHHHHH
Q psy793 314 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNV--KALFRRGRAQVSMNNFEQGLQDY 371 (414)
Q Consensus 314 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~--~a~~~~g~~~~~lg~~~~A~~~~ 371 (414)
+-+...+|.|-.|+|+.++|++-++...+--|-.. ..+-++-.++..+.-|.+....+
T Consensus 275 ~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 275 VYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556789999999999999999988877666221 23445555555555554443333
No 489
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=46.58 E-value=40 Score=20.06 Aligned_cols=26 Identities=23% Similarity=0.529 Sum_probs=12.6
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy793 329 AYKRAINLCDDILLMEPNNVKALFRRG 355 (414)
Q Consensus 329 ~~~~A~~~~~~al~~~p~~~~a~~~~g 355 (414)
+++.|...|++.+...| +++.|.+.|
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 34555555555555543 344444443
No 490
>KOG1497|consensus
Probab=46.05 E-value=2.7e+02 Score=26.52 Aligned_cols=105 Identities=13% Similarity=0.007 Sum_probs=64.5
Q ss_pred HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH-
Q psy793 263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL- 341 (414)
Q Consensus 263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al- 341 (414)
.+......+..|-+.++|..|-.... ++.. .. -.+..........+..+|..|++.++-.+|..+..++-
T Consensus 102 v~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~---~t-----g~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSi 172 (399)
T KOG1497|consen 102 VASIRLHLASIYEKEQNWRDAAQVLV-GIPL---DT-----GQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASI 172 (399)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHh-ccCc---cc-----chhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 35666778999999999998865441 1111 11 11222234556788999999999999999999888873
Q ss_pred -hcCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHh
Q psy793 342 -LMEPNNVKALFRRGRAQV----SMNNFEQGLQDYEQALD 376 (414)
Q Consensus 342 -~~~p~~~~a~~~~g~~~~----~lg~~~~A~~~~~~al~ 376 (414)
.-+..|.......-.||. ..++|-+|...|-+...
T Consensus 173 l~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 173 LQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred hhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455544444333333 33555555555544443
No 491
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=45.90 E-value=3.6e+02 Score=28.07 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy793 313 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 380 (414)
Q Consensus 313 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 380 (414)
.....+..|..+-..++.++|-.+|++.+..+|+ .+++..|+.++..|-...|...++ ++.|.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 103 (578)
T PRK15490 41 TSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK---KVSNG 103 (578)
T ss_pred hHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH---HhCcc
Confidence 3344556677777788899999999999999998 788888999999998888888777 45555
No 492
>KOG0885|consensus
Probab=45.84 E-value=12 Score=35.70 Aligned_cols=49 Identities=31% Similarity=0.541 Sum_probs=31.3
Q ss_pred ccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCC
Q psy793 106 VISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTG 162 (414)
Q Consensus 106 ~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~ 162 (414)
|+...|||++|.|..||||++ +.+.-|..+....+.... .-.|-+.|.|
T Consensus 49 y~nt~fhrlvp~f~~Qggdp~------~~gtGgesiyg~~fadE~--h~Rlrf~rrG 97 (439)
T KOG0885|consen 49 YDNTEFHRLVPGFLVQGGDPT------GTGTGGESIYGRPFADEF--HPRLRFNRRG 97 (439)
T ss_pred ccCceeeeeccchhcccCCCC------CCCCCccccccccchhhc--Ccceeeeccc
Confidence 346789999999999999977 444455655555443322 2334455554
No 493
>KOG3616|consensus
Probab=45.76 E-value=88 Score=33.14 Aligned_cols=64 Identities=11% Similarity=0.060 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHH------HHHHhc-----------------CCC-CHHHHHHHHHHHHHcCCHHHHH
Q psy793 313 YTAALLNMAAVQLKFKAYKRAINLC------DDILLM-----------------EPN-NVKALFRRGRAQVSMNNFEQGL 368 (414)
Q Consensus 313 ~~~~~~nla~~~~~l~~~~~A~~~~------~~al~~-----------------~p~-~~~a~~~~g~~~~~lg~~~~A~ 368 (414)
.+.+|...|.-+-+.|+|.+|.+.| .+|+++ .|+ -...+.++|.-+...|+...|.
T Consensus 823 t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae 902 (1636)
T KOG3616|consen 823 TISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAE 902 (1636)
T ss_pred HHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHH
Confidence 3456666676677777776665543 223322 122 2356778888899999999888
Q ss_pred HHHHHHHh
Q psy793 369 QDYEQALD 376 (414)
Q Consensus 369 ~~~~~al~ 376 (414)
..|-+|-+
T Consensus 903 ~~flea~d 910 (1636)
T KOG3616|consen 903 EHFLEAGD 910 (1636)
T ss_pred HHHHhhhh
Confidence 87766543
No 494
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=45.70 E-value=3.2e+02 Score=27.16 Aligned_cols=30 Identities=10% Similarity=-0.151 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793 348 VKALFRRGRAQVSMNNFEQGLQDYEQALDL 377 (414)
Q Consensus 348 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 377 (414)
+.|+|++|......+++-+|+..++.|...
T Consensus 296 A~A~~~~g~d~~e~~k~GeaIa~L~~A~~~ 325 (413)
T cd09245 296 ALACKFLGIDAGENGKVGEAIGWLRAAKKE 325 (413)
T ss_pred HHHHHHHHHhhHhcCCHHHHHHHHHHHHHH
Confidence 457777888788889999999999999873
No 495
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=45.30 E-value=2.9e+02 Score=26.67 Aligned_cols=117 Identities=15% Similarity=0.178 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhhhHHhhhc---------CHHHHHHHHHHHHHHHHhhccCCcH----HHHHhhHHHHHHHHHHHHHHHHH
Q psy793 260 MEDVIRTIKNSGNEYFKLN---------RMHDAQRKYKKAVRYIKWYNQSQSK----TQQKHFRSYYTAALLNMAAVQLK 326 (414)
Q Consensus 260 ~~~~a~~~~~~G~~~~~~~---------~~~~A~~~y~~Al~~~~~~~~~~~~----~~~~~~~~~~~~~~~nla~~~~~ 326 (414)
..+.+..+++.|-.+.+.+ ..+.|..+|++|--++......... .....+.+....++..++.+.-+
T Consensus 107 ~fEka~vlfNiaal~s~~a~~~~~~~~~glK~A~~~fq~AAG~F~~l~e~~~~~~~~~~s~Dl~~~~l~~l~~lmLAQAQ 186 (353)
T cd09246 107 HFEKAAVLFNLGALSSQLGLQQDRTTAEGIKQACHAFQAAAGAFAHLRDKVSGKTGGFRTPDLTAECLGMLESLMLAQAQ 186 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4566777777776664322 4788888898888776543321110 01223344555555555544433
Q ss_pred hhCHHHHH-----------------HHHHHHHhc---CC-------C------------CHHHHHHHHHHHHHcCCHHHH
Q psy793 327 FKAYKRAI-----------------NLCDDILLM---EP-------N------------NVKALFRRGRAQVSMNNFEQG 367 (414)
Q Consensus 327 l~~~~~A~-----------------~~~~~al~~---~p-------~------------~~~a~~~~g~~~~~lg~~~~A 367 (414)
..=|.+|+ .+|+.|.+. ++ . .+.++|+.|..+...+++-+|
T Consensus 187 E~~~~Ka~~~~~k~sliAKLa~qv~~~Y~~a~~~l~~~~~~~~~~~~W~~~~~~K~~~f~A~A~~~~a~~~~~~~k~Gea 266 (353)
T cd09246 187 ECFYEKAVADGKSPAVCSKLAKQARSYYEEALEALDSPPLKGHFDKSWVAHVQLKAAYFRAEALYRAAKDLHEKEDIGEE 266 (353)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcchHHH
Confidence 33333332 234444321 11 1 133677777777777888888
Q ss_pred HHHHHHHHh
Q psy793 368 LQDYEQALD 376 (414)
Q Consensus 368 ~~~~~~al~ 376 (414)
+..++.|.+
T Consensus 267 Ia~L~~A~~ 275 (353)
T cd09246 267 IARLRAASD 275 (353)
T ss_pred HHHHHHHHH
Confidence 888888765
No 496
>KOG0883|consensus
Probab=45.17 E-value=7.9 Score=37.04 Aligned_cols=20 Identities=60% Similarity=0.881 Sum_probs=18.2
Q ss_pred cccchhcchhhhHhhcCCCC
Q psy793 107 ISQYFHRIIPQFMIQGGDIT 126 (414)
Q Consensus 107 ~~~~f~~~~~~~~~~~g~~~ 126 (414)
....|||.+..||+||||++
T Consensus 315 nnt~FHRsIrnFmiQGGDPT 334 (518)
T KOG0883|consen 315 NNTIFHRSIRNFMIQGGDPT 334 (518)
T ss_pred cchHHHHHHHHHeeeCCCCC
Confidence 37899999999999999976
No 497
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=45.03 E-value=1.1e+02 Score=22.50 Aligned_cols=51 Identities=22% Similarity=0.232 Sum_probs=35.0
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy793 358 QVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQN 412 (414)
Q Consensus 358 ~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~ 412 (414)
+..+..++=|+.++.--|.-.|+|..|+........+. .+-++.|.+.|+.
T Consensus 5 L~~I~~~~Fa~~dl~LyLDTHP~d~~Al~~y~~~~~~~----~~l~~~Ye~~yGP 55 (78)
T PF12652_consen 5 LREIQEVSFAVVDLNLYLDTHPDDQEALEYYNEYSKQR----KQLKKEYEKRYGP 55 (78)
T ss_pred HHHHHHHhhHHHHHHHHhcCCCCcHHHHHHHHHHHHHH----HHHHHHHHHHhCC
Confidence 33444555578888888899999999998886665544 3445566666653
No 498
>KOG2114|consensus
Probab=44.56 E-value=1.2e+02 Score=32.54 Aligned_cols=31 Identities=3% Similarity=-0.060 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793 313 YTAALLNMAAVQLKFKAYKRAINLCDDILLM 343 (414)
Q Consensus 313 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 343 (414)
...++...|.-+++.|+|++|...|-++|..
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 3467778888899999999999999999965
No 499
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=43.95 E-value=62 Score=25.97 Aligned_cols=36 Identities=14% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHH
Q psy793 257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR 292 (414)
Q Consensus 257 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~ 292 (414)
+++.++........|..++.+|++.+|+.++-+||.
T Consensus 56 ~~~~e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~ 91 (121)
T PF02064_consen 56 PEEMERFFLQQVQLGEQLLAQGDYEEAAEHFYNALK 91 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
No 500
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=43.88 E-value=48 Score=18.72 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793 317 LLNMAAVQLKFKAYKRAINLCDDIL 341 (414)
Q Consensus 317 ~~nla~~~~~l~~~~~A~~~~~~al 341 (414)
|..+-.+|.+.+++++|.+.+.+..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344455566666666666655544
Done!