RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy793
(414 letters)
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 454 bits (1171), Expect = e-160
Identities = 165/405 (40%), Positives = 224/405 (55%), Gaps = 48/405 (11%)
Query: 7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGS 65
N VF DV IG E+VGR+V+ELF IVPKTAENFRALCTGE G G GK LHF G
Sbjct: 12 NPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGC 71
Query: 66 RFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDI 125
FHRII +FMIQGGD
Sbjct: 72 --------------------------------------------PFHRIIKKFMIQGGDF 87
Query: 126 TNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKN 185
+N NGTGGESIYG FEDENF KH EG LS+AN G NTN SQFFIT P PHLDGK+
Sbjct: 88 SNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAG-SNTNGSQFFITTVPTPHLDGKH 146
Query: 186 VVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWGVAENDGSQDVYPPFP 245
VVFG V +G GVA+ + VE + +KP C I G+L +DWG+ DGS D +P FP
Sbjct: 147 VVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGELKEGDDWGIFPKDGSGDSHPDFP 206
Query: 246 EDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQ 305
ED + + V ++ + +KN GN +FK A +KY K +RY++ +
Sbjct: 207 EDADVDLKDVD--KILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDAD 264
Query: 306 QKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFE 365
+ + +LN+ A +LK ++ A++ C + L ++P+N KAL+RR + + ++
Sbjct: 265 GAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYD 324
Query: 366 QGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 410
Q L D ++A ++ P D+ I E+ V+++++ + EK YA+MF
Sbjct: 325 QALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMF 369
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane,
repeat, rotamase, peptidylprolyl isomerase, structural
genomics; 2.00A {Homo sapiens}
Length = 192
Score = 269 bits (691), Expect = 3e-90
Identities = 84/221 (38%), Positives = 107/221 (48%), Gaps = 47/221 (21%)
Query: 7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGK-LGKALHFTGS 65
G+ D+ I E VGR++ +LF I PKT +NF LC+GE G GK GK L + GS
Sbjct: 16 PRGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGS 75
Query: 66 RFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDI 125
FHR++ FMIQGGD
Sbjct: 76 TFHRVVK--------------------------------------------NFMIQGGDF 91
Query: 126 TNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKN 185
+ NG GGESIYG F+DENF LKH LS+AN G +TN SQFFIT P PHLDG +
Sbjct: 92 SEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRG-KHTNGSQFFITTKPAPHLDGVH 150
Query: 186 VVFGCVRQGFGVAREVSYVE-AENDKPLVTCTITNSGQLSL 225
VVFG V GF V ++ ++ +P + + G L+
Sbjct: 151 VVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLAT 191
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA
splicing, alternative splicing, nucleus, rotamase,
cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A*
2gw2_A
Length = 179
Score = 267 bits (685), Expect = 2e-89
Identities = 87/219 (39%), Positives = 106/219 (48%), Gaps = 47/219 (21%)
Query: 7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGS 65
K F D++I + GR+V ELF + PKT ENFR LCTGE G GK K LH+
Sbjct: 6 KVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSC 65
Query: 66 RFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDI 125
FHR++ FM+QGGD
Sbjct: 66 LFHRVVK--------------------------------------------DFMVQGGDF 81
Query: 126 TNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKN 185
+ NG GGESIYG FEDE+F +KH E LS+AN G +TN SQFFIT P PHLDG +
Sbjct: 82 SEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRG-KDTNGSQFFITTKPTPHLDGHH 140
Query: 186 VVFGCVRQGFGVAREVSYVE-AENDKPLVTCTITNSGQL 223
VVFG V G V RE+ + KP I + G+L
Sbjct: 141 VVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP:
b.62.1.1 PDB: 1a33_A 1c5f_A*
Length = 177
Score = 267 bits (684), Expect = 3e-89
Identities = 89/219 (40%), Positives = 112/219 (51%), Gaps = 47/219 (21%)
Query: 7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGS 65
K+ VFLDV+I GR+V+EL+ I P+T NF LCTG G GK+ GK LH+ GS
Sbjct: 3 KKDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGS 62
Query: 66 RFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDI 125
FHR+I FMIQGGD
Sbjct: 63 TFHRVIK--------------------------------------------NFMIQGGDF 78
Query: 126 TNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKN 185
T +GTGGESIYG F+DE F +KH +S+AN G PNTN SQFFIT P PHL+ +
Sbjct: 79 TKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKG-PNTNGSQFFITTTPAPHLNNIH 137
Query: 186 VVFGCVRQGFGVAREVSYVE-AENDKPLVTCTITNSGQL 223
VVFG V G V ++ Y++ ++PL I N G+L
Sbjct: 138 VVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A
{Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A
1e8k_A 1dyw_A 2igw_A 2hqj_A
Length = 173
Score = 263 bits (675), Expect = 5e-88
Identities = 100/214 (46%), Positives = 118/214 (55%), Gaps = 45/214 (21%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
VF D++IG + GR+V+EL+ +VPKTA NFRALCTGE G GK GK LHF GS+FHR
Sbjct: 3 RSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHR 62
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
IIP FMIQGGD T NGTGGESIYG K
Sbjct: 63 IIPNFMIQGGDFTRGNGTGGESIYGE-------K-------------------------- 89
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
F DENFK KH G LS+AN G PNTN SQFF+ LDGK+VVFG
Sbjct: 90 -----------FPDENFKEKHTGPGVLSMANAG-PNTNGSQFFLCTVKTEWLDGKHVVFG 137
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
V +G V + V +++ KP+ C I + GQL
Sbjct: 138 RVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin, isomerase, S
genomics, structural genomics consortium; HET: BMT;
1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Length = 186
Score = 263 bits (675), Expect = 7e-88
Identities = 101/219 (46%), Positives = 122/219 (55%), Gaps = 45/219 (20%)
Query: 3 KSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHF 62
+++ +GN +V+ D+SIG+ GR+ +ELF VP TAENFRALCTGE G G+ GK L +
Sbjct: 12 ENLYFQGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCY 71
Query: 63 TGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQG 122
TGS FHRIIPQFMIQGGD T +GTGGESIYG K
Sbjct: 72 TGSFFHRIIPQFMIQGGDFTRGDGTGGESIYGS-------K------------------- 105
Query: 123 GDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLD 182
F DENF H LS+AN G PNTN SQFFIT PCP LD
Sbjct: 106 ------------------FRDENFVYTHDAPFLLSMANAG-PNTNGSQFFITTVPCPWLD 146
Query: 183 GKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSG 221
GK+VVFG V +G V + + ++N KP + IT SG
Sbjct: 147 GKHVVFGKVLEGMEVVKSIEKCGSQNGKPTKSVCITASG 185
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin,
peptidyl-prolyl-CIS/trans isomerase, spliceosome,
U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
SCOP: b.62.1.1 PDB: 1qoi_A
Length = 177
Score = 263 bits (674), Expect = 9e-88
Identities = 92/224 (41%), Positives = 115/224 (51%), Gaps = 48/224 (21%)
Query: 1 MDKSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKAL 60
M + N +VF DVSIG ++VGRM IELF +VPKTAENFR CTGE K G +
Sbjct: 1 MAVANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGE--FRKDGVPI 58
Query: 61 HFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMI 120
+ GS FHR+I FMI
Sbjct: 59 GYKGSTFHRVIK--------------------------------------------DFMI 74
Query: 121 QGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPH 180
QGGD N +GTG SIY F DENFKL+H G LS+AN+G P+TN QFFIT + C
Sbjct: 75 QGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSG-PSTNGCQFFITCSKCDW 133
Query: 181 LDGKNVVFGCVRQGFGVAREVSYVE-AENDKPLVTCTITNSGQL 223
LDGK+VVFG + G V R++ V N+KP + I+ G++
Sbjct: 134 LDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, cyclophilin-cyclosporin complex,
immunosuppressant, cyclophilin; HET: BMT; 2.1A
{Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Length = 170
Score = 258 bits (662), Expect = 5e-86
Identities = 99/214 (46%), Positives = 116/214 (54%), Gaps = 46/214 (21%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
VF D+SI GR++ ELF I P+T ENFRALCTGE G GK LH+ S FHR
Sbjct: 3 RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKI-GSRGKNLHYKNSIFHR 61
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
IIPQFM QGGDITN NG+GGESIYG
Sbjct: 62 IIPQFMCQGGDITNGNGSGGESIYGR-------S-------------------------- 88
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
F DENF +KH G LS+AN G PNTN+SQFFITL PCP LDGK+VVFG
Sbjct: 89 -----------FTDENFNMKHDQPGLLSMANAG-PNTNSSQFFITLVPCPWLDGKHVVFG 136
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
V +G V RE+ A++ + IT+ G+L
Sbjct: 137 KVIEGMNVVREMEKEGAKSGYVKRSVVITDCGEL 170
>1z81_A Cyclophilin; structural genomics, structural genomics consortium,
SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP:
b.62.1.1
Length = 229
Score = 256 bits (655), Expect = 3e-84
Identities = 79/227 (34%), Positives = 109/227 (48%), Gaps = 51/227 (22%)
Query: 1 MDKSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKAL 60
+ + N +VF+D+++G +G+ ELF++IVPKT+ENFR CTGE +
Sbjct: 50 LSNLLTNPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGE--YKVNNLPV 107
Query: 61 HFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMI 120
+ + FHR+I +FMI
Sbjct: 108 GYKNTIFHRVIK--------------------------------------------EFMI 123
Query: 121 QGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPH 180
QGGD N NG+G SIYG F+DENF +KH EG LS+AN+G PNTN QFFIT C
Sbjct: 124 QGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSG-PNTNGCQFFITTKKCEW 182
Query: 181 LDGKNVVFGCV--RQGFGVAREVSYV--EAENDKPLVTCTITNSGQL 223
LDGKNVVFG + + +++ V KP + + G+L
Sbjct: 183 LDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin,
endoplasmic reticulum, glycoprot isomerase, rotamase;
1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A*
2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Length = 188
Score = 249 bits (639), Expect = 2e-82
Identities = 89/225 (39%), Positives = 116/225 (51%), Gaps = 53/225 (23%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
V+ D+ IG+E VGR++ LF VPKT +NF AL TGE G G + S+FHR
Sbjct: 15 TVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG-------YKNSKFHR 67
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
+I FMIQGGD T +GTGG+SIYG F DENFKLK H
Sbjct: 68 VIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLK------H----------------- 104
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
YGP G +S+AN G +TN SQFFIT LDGK+VVFG
Sbjct: 105 -------YGP--------------GWVSMANAG-KDTNGSQFFITTVKTAWLDGKHVVFG 142
Query: 190 CVRQGFGVAREVSYVEAE-NDKPLVTCTITNSGQLSLNEDWGVAE 233
V +G V R+V + + DKPL I + G++ + + + +A+
Sbjct: 143 KVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEKPFAIAK 187
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase,
RNA-binding, cyclosporin, cyclophilin, beta-barrel;
1.50A {Schistosoma mansoni} PDB: 2ck1_A
Length = 172
Score = 246 bits (631), Expect = 2e-81
Identities = 89/223 (39%), Positives = 112/223 (50%), Gaps = 52/223 (23%)
Query: 1 MDKSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKAL 60
M K VF D+ IG GR+V+EL IVP+TAENFRALCTGE G G
Sbjct: 1 MRTKKQKRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG------ 54
Query: 61 HFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMI 120
+ FHR+IPQFM QGGD +GTGG+SIYG K
Sbjct: 55 -YHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGR-------K----------------- 89
Query: 121 QGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPH 180
F+DENF+L+H+ G LS+AN+G PNTN SQFFI C
Sbjct: 90 --------------------FDDENFQLRHEGFGVLSMANSG-PNTNGSQFFICTTKCDW 128
Query: 181 LDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
LDGK+VVFG V G V +++ V +++ K I+ G+L
Sbjct: 129 LDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCGEL 171
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase,
isomerase-immunosuppressant compl; HET: BMT; 1.47A
{Moniliophthora perniciosa} PDB: 3o7t_A
Length = 164
Score = 245 bits (628), Expect = 5e-81
Identities = 85/216 (39%), Positives = 111/216 (51%), Gaps = 52/216 (24%)
Query: 9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFH 68
VF ++SI ++ GR+V +L+ VPKTA+NFR L TG++G G + S FH
Sbjct: 1 AMANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIFH 53
Query: 69 RIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNF 128
R+IPQFM+QGGD T NGTGG+SIYG K
Sbjct: 54 RVIPQFMLQGGDFTRHNGTGGKSIYGE-------K------------------------- 81
Query: 129 NGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVF 188
F DENF++KH G LS+AN G NTN SQFFIT P LDGK+VVF
Sbjct: 82 ------------FADENFQVKHTKPGLLSMANAG-ANTNGSQFFITTVPTSWLDGKHVVF 128
Query: 189 GCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLS 224
G V +G + R+V + + K T IT+ G ++
Sbjct: 129 GEVIEGLDIVRKVEGKGSASGKTNATIKITDCGTVA 164
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin D; HET: BMT MLE
CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A*
3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A*
3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A*
2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Length = 165
Score = 245 bits (627), Expect = 6e-81
Identities = 91/216 (42%), Positives = 113/216 (52%), Gaps = 52/216 (24%)
Query: 9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFH 68
GN +V+LDV + +GR+V+EL +VPKTAENFRALCTGE G G + GS FH
Sbjct: 2 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFH 54
Query: 69 RIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNF 128
R+IP FM Q GD TN NGTGG+SIYG +
Sbjct: 55 RVIPSFMCQAGDFTNHNGTGGKSIYGS-------R------------------------- 82
Query: 129 NGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVF 188
F DENF LKH G LS+AN G PNTN SQFFI LDGK+VVF
Sbjct: 83 ------------FPDENFTLKHVGPGVLSMANAG-PNTNGSQFFICTIKTDWLDGKHVVF 129
Query: 189 GCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLS 224
G V +G V +++ +++ + IT+ GQLS
Sbjct: 130 GHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 165
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A
{Mimivirus}
Length = 234
Score = 247 bits (632), Expect = 1e-80
Identities = 49/243 (20%), Positives = 79/243 (32%), Gaps = 63/243 (25%)
Query: 7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKG----------KL 56
N V++D+ + E +GR+ I+LF+ P ENF L G+ +
Sbjct: 11 SGKNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNR 70
Query: 57 GKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIP 116
+ G +FH ++ I GDI N NG+ ++Y F
Sbjct: 71 HINRTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVF-------------- 116
Query: 117 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLA----NTGHPNTNNSQFF 172
++ H+ +G LSL +G +S F
Sbjct: 117 ---------------------------GDYFYPHESKGLLSLVPYTDESG-NRYYDSTFM 148
Query: 173 ITL------APCPHLDGKNVVFGCVRQGFGVAREVSYVE-AENDKPLVTCTITNSGQLSL 225
ITL LD VV G V G V +++ + + T +I G
Sbjct: 149 ITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAGRKYPTFSIGKCGAYLD 208
Query: 226 NED 228
+
Sbjct: 209 SSQ 211
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization,
structural genomics consortium, SGC, alternative
splicing, mRNA processing; 1.61A {Homo sapiens} SCOP:
b.62.1.1 PDB: 3uch_A 1zmf_A
Length = 173
Score = 244 bits (625), Expect = 2e-80
Identities = 89/214 (41%), Positives = 110/214 (51%), Gaps = 52/214 (24%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
N V++D+ IG + GR+ + L +VP TAENFR LCT E G G F GS FHR
Sbjct: 11 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFHR 63
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
IIPQFM QGGD TN NGTGG+SIYG K
Sbjct: 64 IIPQFMCQGGDFTNHNGTGGKSIYGK-------K-------------------------- 90
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
F+DENF LKH G LS+AN+G PNTN SQFF+T LDGK+VVFG
Sbjct: 91 -----------FDDENFILKHTGPGLLSMANSG-PNTNGSQFFLTCDKTDWLDGKHVVFG 138
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
V +G V R++ +++ KP I + G+
Sbjct: 139 EVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGEY 172
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa,
KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A*
3bt8_A
Length = 172
Score = 242 bits (619), Expect = 1e-79
Identities = 87/215 (40%), Positives = 105/215 (48%), Gaps = 54/215 (25%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
V+ DV I E +GR+ I LF P T ENFR LCTGE+G G + S FHR
Sbjct: 11 TAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG-------YKDSIFHR 63
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
+I FMIQGGD TNF+GTGG+SIYG F DEN +K H
Sbjct: 64 VIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVK------HF---------------- 101
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
G LS+AN G PNTN SQFFIT AP P LDG++VVFG
Sbjct: 102 -----------------------VGALSMANAG-PNTNGSQFFITTAPTPWLDGRHVVFG 137
Query: 190 CVRQGFGVAREVSYVE-AENDKPLVTCTITNSGQL 223
V G V + + +D+P+ I SG+L
Sbjct: 138 KVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic,
inhibito isomerase-isomerase inhibitor complex; HET:
EA4; 2.14A {Homo sapiens}
Length = 184
Score = 242 bits (619), Expect = 2e-79
Identities = 94/214 (43%), Positives = 109/214 (50%), Gaps = 52/214 (24%)
Query: 10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
N VF D+++ E +GR+ ELF VPKTAENFRAL TGE G G + GS FHR
Sbjct: 22 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 74
Query: 70 IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
IIP FM QGGD T NGTGG+SIYG FEDENF LK H
Sbjct: 75 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILK------H----------------- 111
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
GP G LS+AN G PNTN SQFFI A LDGK+VVFG
Sbjct: 112 -------TGP--------------GILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFG 149
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
V++G + + + N K TI + GQL
Sbjct: 150 KVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 183
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW,
decode, cytoplasm, rotamase, structural genomics; HET:
PG5; 1.95A {Encephalitozoon cuniculi}
Length = 193
Score = 240 bits (615), Expect = 9e-79
Identities = 87/222 (39%), Positives = 108/222 (48%), Gaps = 54/222 (24%)
Query: 7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSR 66
KE + V+ DV EE +GR+V++L IVPKTA+NFR LC G+G + GS
Sbjct: 24 KEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG-------YKGST 76
Query: 67 FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDIT 126
FHRIIP FM+QGGD T NGTGG SIYG F DENF+LK H
Sbjct: 77 FHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELK------H-------------- 116
Query: 127 NFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNV 186
G LS+AN G +TN SQFFITL LD K+V
Sbjct: 117 ----------TKE--------------GILSMANCG-AHTNGSQFFITLGKTQWLDEKHV 151
Query: 187 VFGCVRQGFGVAREVSYVEAEN--DKPLVTCTITNSGQLSLN 226
VFG V +G V +++ +E+ K I + G L N
Sbjct: 152 VFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCGVLGSN 193
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp
F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus}
SCOP: b.62.1.1
Length = 172
Score = 229 bits (585), Expect = 2e-74
Identities = 88/223 (39%), Positives = 104/223 (46%), Gaps = 61/223 (27%)
Query: 10 NYIVFLDVS-----IGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTG 64
VF DV E KVGR+V LF VPKTA+NFR LC G+G +
Sbjct: 2 MSQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG-------YRE 54
Query: 65 SRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGD 124
S FHRIIP FMIQGGD T NGTGG SIYG K
Sbjct: 55 STFHRIIPNFMIQGGDFTRGNGTGGRSIYGD-------K--------------------- 86
Query: 125 ITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGK 184
F DENF KH +G LS+AN G PNTN SQFFIT A LDGK
Sbjct: 87 ----------------FADENFSRKHDKKGILSMANAG-PNTNGSQFFITTAVTSWLDGK 129
Query: 185 NVVFGCV--RQGFGVAREVSYVEAEN--DKPLVTCTITNSGQL 223
+VVFG V + + V +E+ + + + + I N G+L
Sbjct: 130 HVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel,
disorder-order transition, HOOK-like, mRNA processing,
mRNA splicing, rotamase; NMR {Homo sapiens}
Length = 203
Score = 181 bits (461), Expect = 2e-55
Identities = 74/230 (32%), Positives = 94/230 (40%), Gaps = 61/230 (26%)
Query: 24 VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITN 83
+G +V+EL+ PKT +NF L Y + G++FHRII FMIQGGD T
Sbjct: 20 MGIIVLELYWKHAPKTCKNFAELARRGY----------YNGTKFHRIIKDFMIQGGDPTG 69
Query: 84 FNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFED 143
G GG SIYG FEDE H
Sbjct: 70 -TGRGGASIYGKQFEDE----------LH------------------------------- 87
Query: 144 ENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSY 203
LK G L++AN G P+TN SQFF+TLAP LDGK+ +FG V QG G+ V
Sbjct: 88 --PDLKFTGAGILAMANAG-PDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGM 144
Query: 204 VE-AENDKPL-----VTCTITNSGQLSLNEDWGVAENDGSQDVYPPFPED 247
VE D+P+ + + G G G +P
Sbjct: 145 VETNSQDRPVDDVKIIKAYPSGGGGSGGGSGGGSGGGSGDGGAFPEIHVA 194
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain,
structura genomics, structural genomics consortium, SGC,
unknown FUNC; 1.80A {Plasmodium falciparum} SCOP:
b.62.1.1
Length = 160
Score = 175 bits (446), Expect = 8e-54
Identities = 66/197 (33%), Positives = 82/197 (41%), Gaps = 56/197 (28%)
Query: 24 VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITN 83
+G + I LF KT +NF Y + FHR+I FM+Q GD +
Sbjct: 14 MGDIHISLFYKECKKTVQNFSVHSINGY----------YNNCIFHRVIKHFMVQTGDPSG 63
Query: 84 FNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFED 143
+GTGGESI+G FEDE F
Sbjct: 64 -DGTGGESIWGNEFEDEFFD---------------------------------------- 82
Query: 144 ENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSY 203
L H +S+AN G PNTN SQFFIT PCP LD K+ VFG V QG + ++
Sbjct: 83 ---HLNHSKPFMVSMANCG-PNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEK 138
Query: 204 VE-AENDKPLVTCTITN 219
V + DKPL I N
Sbjct: 139 VRTDKRDKPLEDIKILN 155
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans
isomerization, protein-folding, peptidylprolyl ISO
structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Length = 176
Score = 174 bits (443), Expect = 3e-53
Identities = 72/209 (34%), Positives = 88/209 (42%), Gaps = 57/209 (27%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
D +I +G + +LF PKT ENF Y + G FHRII
Sbjct: 19 RVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGY----------YNGHTFHRIIK 68
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
FMIQ GD T G GGESI+G FEDE FH
Sbjct: 69 GFMIQTGDPTG-TGMGGESIWGGEFEDE----------FH-------------------- 97
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
L+H LS+AN G NTN SQFFIT+ P P LD K+ VFG V
Sbjct: 98 -------------STLRHDRPYTLSMANAG-SNTNGSQFFITVVPTPWLDNKHTVFGRVT 143
Query: 193 QGFGVAREVSYVE--AENDKPLVTCTITN 219
+G V + +S V+ + DKP +I N
Sbjct: 144 KGMEVVQRISNVKVNPKTDKPYEDVSIIN 172
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1;
isomerase-immunosuppressant complex, immunosuppressant;
HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB:
1xwn_A
Length = 166
Score = 169 bits (431), Expect = 2e-51
Identities = 71/198 (35%), Positives = 89/198 (44%), Gaps = 56/198 (28%)
Query: 24 VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITN 83
+G +V+EL+ PKT +NF L Y + G++FHRII FMIQGGD T
Sbjct: 20 MGIIVLELYWKHAPKTCKNFAELARRGY----------YNGTKFHRIIKDFMIQGGDPTG 69
Query: 84 FNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFED 143
G GG SIYG FEDE H
Sbjct: 70 -TGRGGASIYGKQFEDE----------LH------------------------------- 87
Query: 144 ENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSY 203
LK G L++AN G P+TN SQFF+TLAP LDGK+ +FG V QG G+ V
Sbjct: 88 --PDLKFTGAGILAMANAG-PDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGM 144
Query: 204 VE-AENDKPLVTCTITNS 220
VE D+P+ I +
Sbjct: 145 VETNSQDRPVDDVKIIKA 162
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics
consortium, SGC, isomerase; 2.50A {Plasmodium yoelii}
SCOP: b.62.1.1
Length = 196
Score = 168 bits (427), Expect = 1e-50
Identities = 66/197 (33%), Positives = 89/197 (45%), Gaps = 56/197 (28%)
Query: 24 VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITN 83
+G +EL+ + PKT NF LC + + + FHR+IP F+IQGGD T
Sbjct: 47 LGDFEVELYWYHSPKTCLNFYTLCEMGF----------YDNTIFHRVIPNFVIQGGDPTG 96
Query: 84 FNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFED 143
G GG+SIYG FEDE +
Sbjct: 97 -TGKGGKSIYGEYFEDE----------IN------------------------------- 114
Query: 144 ENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSY 203
+LKH G LS++N G PNTN+SQFFITLAP PHLDGK+ +F V + ++
Sbjct: 115 --KELKHTGAGILSMSNNG-PNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIAS 171
Query: 204 VEA-ENDKPLVTCTITN 219
V+ +KP+ I
Sbjct: 172 VQTTATNKPIFDLKILR 188
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum
cyclophilin isomerase, structural genomics; 2.01A
{Cryptosporidium parvum iowa II} PDB: 2qer_A
Length = 185
Score = 163 bits (415), Expect = 5e-49
Identities = 60/211 (28%), Positives = 85/211 (40%), Gaps = 58/211 (27%)
Query: 13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
++ G + ELF PK +NF AL Y + + FH+ I
Sbjct: 14 LYFQGVRIITNYGDLKFELFCSQCPKACKNFLALSASGY----------YKNTIFHKNIK 63
Query: 73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
F+IQGGD T G GGESIYG F+DE +
Sbjct: 64 GFIIQGGDPTG-TGKGGESIYGRYFDDE----------IYP------------------- 93
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTG---HPNTNNSQFFITLAPCPHLDGKNVVFG 189
+LK+ G LS+A+ G PNTN SQFFIT + P L+G+ V+FG
Sbjct: 94 --------------ELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFG 139
Query: 190 CVRQGFGVAREVSYVEA-ENDKPLVTCTITN 219
+ GF + + ++ KP+ I +
Sbjct: 140 KLIDGFETLNTLENCPSDKSHKPIDEIIIKD 170
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;
isomerase-immunosuppressant complex, immunosuppressant,
cyclophilin, structural G structural genomics
consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Length = 201
Score = 163 bits (415), Expect = 9e-49
Identities = 55/205 (26%), Positives = 78/205 (38%), Gaps = 60/205 (29%)
Query: 24 VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITN 83
G + IEL + P+ ++F LC +Y F + FHR I FMIQGG
Sbjct: 15 QGSLNIELHADMAPRACDSFLRLCAVKY----------FDDTIFHRCIRNFMIQGGRAEL 64
Query: 84 FNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIY------ 137
+ +S
Sbjct: 65 RQPSK----------------------------------------KKEVQQSPRSISGFP 84
Query: 138 -GPCFEDE-NFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGF 195
G FEDE + +L H+ G LS+AN G ++N S+FFIT C HL+ K+ +FG V G
Sbjct: 85 GGAPFEDEFDNRLVHQGIGVLSMANDG-KHSNLSEFFITFKSCEHLNNKHTIFGRVVGGL 143
Query: 196 GVAREVSYVEA-ENDKPLVTCTITN 219
V R+ +E + DKPL +
Sbjct: 144 DVLRQWEKLETDKKDKPLKPPKVEE 168
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix,
disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1
PDB: 1xyh_A 2oju_A*
Length = 161
Score = 160 bits (407), Expect = 4e-48
Identities = 68/198 (34%), Positives = 81/198 (40%), Gaps = 57/198 (28%)
Query: 24 VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITN 83
VG + IE+F PKT ENF ALC Y + G FHR I FM+Q GD T
Sbjct: 9 VGDIKIEVFCERTPKTCENFLALCASNY----------YNGCIFHRNIKGFMVQTGDPTG 58
Query: 84 FNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFED 143
G GG SI+G FEDE +
Sbjct: 59 -TGRGGNSIWGKKFEDE----------YSE------------------------------ 77
Query: 144 ENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSY 203
LKH G +S+AN G PNTN SQFFIT PHLD K VFG V G E+
Sbjct: 78 ---YLKHNVRGVVSMANNG-PNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEK 133
Query: 204 VE--AENDKPLVTCTITN 219
+ + +PL I +
Sbjct: 134 LPVNEKTYRPLNDVHIKD 151
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans
isomerization, peptidylprolyl isomerase, protein-
folding, structural genomics consortium; 1.65A {Homo
sapiens} SCOP: b.62.1.1
Length = 197
Score = 157 bits (398), Expect = 3e-46
Identities = 67/198 (33%), Positives = 84/198 (42%), Gaps = 57/198 (28%)
Query: 24 VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITN 83
G + +EL + PKT ENF LC Y + G+ FHR I F+IQGGD T
Sbjct: 28 KGDLNLELHCDLTPKTCENFIRLCKKHY----------YDGTIFHRSIRNFVIQGGDPTG 77
Query: 84 FNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFED 143
GTGGES +G F+DE F
Sbjct: 78 -TGTGGESYWGKPFKDE----------FRP------------------------------ 96
Query: 144 ENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSY 203
L H G LS+AN+G PN+N SQFFIT C +LD K+ +FG V GF V +
Sbjct: 97 ---NLSHTGRGILSMANSG-PNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMEN 152
Query: 204 VE--AENDKPLVTCTITN 219
VE + D+P I
Sbjct: 153 VESDPKTDRPKEEIRIDA 170
>2hq6_A Serologically defined colon cancer antigen 10; protein folding,
peptidyl-prolyl CIS-trans isomerase, struct genomics;
1.75A {Homo sapiens}
Length = 185
Score = 155 bits (395), Expect = 5e-46
Identities = 54/198 (27%), Positives = 80/198 (40%), Gaps = 57/198 (28%)
Query: 24 VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITN 83
G + IEL+ PK NF LC Y + + FHR++P F++QGGD T
Sbjct: 33 AGDIDIELWSKEAPKACRNFIQLCLEAY----------YDNTIFHRVVPGFIVQGGDPTG 82
Query: 84 FNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFED 143
G+GGESIYG F+DE FH
Sbjct: 83 -TGSGGESIYGAPFKDE----------FHS------------------------------ 101
Query: 144 ENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG-CVRQGFGVAREVS 202
+L+ G +++AN G + N SQFF TL L+ K+ +FG +S
Sbjct: 102 ---RLRFNRRGLVAMANAG-SHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNMLRLS 157
Query: 203 YVEA-ENDKPLVTCTITN 219
V+ ++++P I +
Sbjct: 158 EVDIDDDERPHNPHKIKS 175
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 156 bits (395), Expect = 6e-46
Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 7/184 (3%)
Query: 233 ENDGSQDVYPPFPED--WKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKA 290
+ G +++Y + + E + IK GNE+FK N +++A KYK+A
Sbjct: 10 HSSGRENLYFQGAKKSIYDYTDE-----EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEA 64
Query: 291 VRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA 350
+ + + + ++ + LN+A K K Y +AI+ +L ++ NNVKA
Sbjct: 65 LDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKA 124
Query: 351 LFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 410
L++ G A + E+ ++ +A L PN+ I +++ +K+T+ MF
Sbjct: 125 LYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184
Query: 411 QNGK 414
G
Sbjct: 185 DKGP 188
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 155 bits (393), Expect = 4e-44
Identities = 56/210 (26%), Positives = 105/210 (50%), Gaps = 5/210 (2%)
Query: 207 ENDKPLVTCTITNSGQLSLNEDWGVAENDGSQDVYPPFPEDWKSNPETVQLNQME--DVI 264
+ + +V + + E + + N ++ Y + ++ E+ ++N E +
Sbjct: 90 KGEHSIVYLKPSYAFGSVGKEKFQIPPN--AELKYELHLKSFEKAKESWEMNSEEKLEQS 147
Query: 265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQ 324
+K G YFK + A +YKK V +++ Y S S + + ++ A+ LN+A
Sbjct: 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLE-YESSFSNEEAQKAQALRLASHLNLAMCH 206
Query: 325 LKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 384
LK +A+ AI C+ L ++ NN K L RRG A +++N+FE D+++ L L PN++
Sbjct: 207 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 266
Query: 385 LKEIAFVRKQMRHHLNLEKMTYARMFQNGK 414
++A ++++R L EK YA MF+
Sbjct: 267 KTQLAVCQQRIRRQLAREKKLYANMFERLA 296
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 150 bits (380), Expect = 3e-42
Identities = 47/198 (23%), Positives = 83/198 (41%), Gaps = 4/198 (2%)
Query: 221 GQLSLNEDWGVAEN-DGSQDVYPPFPEDWKSNPETVQLNQMEDV--IRTIKNSGNEYFKL 277
G+ V D +V ++ K + E + K GN FK
Sbjct: 133 GKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKE 192
Query: 278 NRMHDAQRKYKKAVRYIKW-YNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL 336
++ +A ++Y+ A+ Y+ + Q + LN+AA +K K Y AI
Sbjct: 193 EKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH 252
Query: 337 CDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR 396
C+ +L E N KALFRRG+A+ + + D+ +A P+D+ I +E+ + +Q +
Sbjct: 253 CNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEK 312
Query: 397 HHLNLEKMTYARMFQNGK 414
+K Y +F+
Sbjct: 313 ALYQKQKEMYKGIFKGKD 330
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 144 bits (365), Expect = 5e-42
Identities = 31/157 (19%), Positives = 63/157 (40%), Gaps = 3/157 (1%)
Query: 258 NQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYN--QSQSKTQQKHFRSYYTA 315
+ + ++ GNE F +A Y+ A+ + + + +
Sbjct: 5 DDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIP 64
Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 375
NM+ L A ++L E N KALFRR +A+++ ++ +D + L
Sbjct: 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124
Query: 376 DLLPNDQQIL-KEIAFVRKQMRHHLNLEKMTYARMFQ 411
P ++ +E+ V ++ ++TY++MFQ
Sbjct: 125 RNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMFQ 161
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009,
rotamase, structural proteomics in europe, spine; 2.6A
{Mycobacterium tuberculosis} SCOP: b.62.1.1
Length = 191
Score = 141 bits (357), Expect = 2e-40
Identities = 59/203 (29%), Positives = 77/203 (37%), Gaps = 56/203 (27%)
Query: 25 GRMVIELFKHIVPKTAENFRALCTGEY-----GKGKLGKALHFTGSRFHRIIPQFMIQGG 79
G + I LF + PKT NF L G + G+ FHR+I FMIQGG
Sbjct: 33 GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92
Query: 80 DITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGP 139
D T G GG G F DE FH
Sbjct: 93 DPTG-TGRGGP---GYKFADE----------FHP-------------------------- 112
Query: 140 CFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCV--RQGFGV 197
+L+ L++AN G P TN SQFFIT+ PHL+ ++ +FG V + V
Sbjct: 113 -------ELQFDKPYLLAMANAG-PGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRV 164
Query: 198 AREVSYVE-AENDKPLVTCTITN 219
+S ND+P I +
Sbjct: 165 VEAISKTATDGNDRPTDPVVIES 187
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural
genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Length = 232
Score = 137 bits (347), Expect = 2e-38
Identities = 48/213 (22%), Positives = 75/213 (35%), Gaps = 71/213 (33%)
Query: 24 VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITN 83
+G + +EL+ P NF LC Y + + FHR++ F++QGGD T
Sbjct: 30 LGDLDVELWARECPLACRNFVQLCLEGY----------YVNTIFHRVVKDFIVQGGDPTG 79
Query: 84 FNGTGG--ESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCF 141
G GG + G F+ E H
Sbjct: 80 -TGRGGADTTFDGKPFDVE----------THP---------------------------- 100
Query: 142 EDENFKLKHKFEGQLSLANTG-------------HPNTNNSQFFITLAPCPHLDGKNVVF 188
+LK ++ G + +AN G TN +QFFITLA L+ +F
Sbjct: 101 -----RLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLF 155
Query: 189 GCV-RQGFGVAREVSYVEA-ENDKPLVTCTITN 219
G V + + +E + D+P+ I +
Sbjct: 156 GKVTGHTLYNLMKFNDLEVGKEDRPMTPPFIKS 188
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 142 bits (360), Expect = 2e-38
Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 1/170 (0%)
Query: 243 PFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS 302
+ + + + +K G YFK + A +Y K V +++ S
Sbjct: 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEM-EYGLS 305
Query: 303 KTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN 362
+ + K S+ AA LN+A LK + Y +A+ CD L ++ N K L+RRG AQ+ MN
Sbjct: 306 EKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMN 365
Query: 363 NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQN 412
FE D+E+ L++ P ++ +I+ +K+ + H ++ YA MF+
Sbjct: 366 EFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 103 bits (260), Expect = 6e-27
Identities = 34/166 (20%), Positives = 62/166 (37%), Gaps = 20/166 (12%)
Query: 230 GVAENDGSQDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKK 289
G + + G P PE + P + Q+ + GNE FK Y
Sbjct: 1 GSSGSSGMTVSGPGTPEPRPATPGASSVEQL-------RKEGNELFK-------CGDYGG 46
Query: 290 AVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVK 349
A + Y Q+ ++ N AA LK + Y +A + + +VK
Sbjct: 47 A---LAAYTQALGLDATPQDQAVL---HRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100
Query: 350 ALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 395
AL+RR +A + +Q + D ++ + L P ++ + + +
Sbjct: 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPS 146
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex;
HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB:
2nul_A 2rs4_A
Length = 164
Score = 100 bits (251), Expect = 2e-25
Identities = 43/208 (20%), Positives = 65/208 (31%), Gaps = 70/208 (33%)
Query: 25 GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNF 84
G +VI+ F P+T +NF C + + + FHR+I FMIQGG F
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGG---F 55
Query: 85 NGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE 144
+ ++E NG
Sbjct: 56 EPGMKQKATKEPIKNE-AN-------------------------NG-------------- 75
Query: 145 NFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNV--------VFGCVRQGFG 196
LK+ G L++A T P++ +QFFI + L+ VF V G
Sbjct: 76 ---LKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMD 131
Query: 197 VAREVSYVE-----AENDKPLVTCTITN 219
++ V D P I +
Sbjct: 132 EVDKIKGVATGRSGMHQDVPKEDVIIES 159
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics
center for infectious disease; 1.65A {Burkholderia
pseudomallei} PDB: 3t1u_A*
Length = 167
Score = 99.9 bits (250), Expect = 3e-25
Identities = 44/208 (21%), Positives = 67/208 (32%), Gaps = 72/208 (34%)
Query: 25 GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNF 84
G + +EL + PKT ENF K H+ G+ FHR+I FMIQGG F
Sbjct: 13 GVIKLELDEAKAPKTVENFLNYV----------KKGHYDGTIFHRVINGFMIQGGG---F 59
Query: 85 NGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE 144
+ +E
Sbjct: 60 EP------------------------------------------GLKQKPT--DAPIANE 75
Query: 145 -NFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNV--------VFGCVRQGF 195
N LK+ +++A T P++ +QFFI + L+ + VFG V +G
Sbjct: 76 ANNGLKND-TYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQ 134
Query: 196 GVAREVSYVE-----AENDKPLVTCTIT 218
+ ++ V+ D P I
Sbjct: 135 DIVDKIKAVKTGSKGFHQDVPNDDVVIE 162
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex;
HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB:
1j2a_A* 1vai_A* 1clh_A
Length = 166
Score = 99.2 bits (248), Expect = 7e-25
Identities = 50/221 (22%), Positives = 75/221 (33%), Gaps = 72/221 (32%)
Query: 8 EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRF 67
+G+ V L S G + +EL K P + +NF + + + F
Sbjct: 2 KGDPHVLLTTSAGN-----IELELDKQKAPVSVQNFVDYV----------NSGFYNNTTF 46
Query: 68 HRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITN 127
HR+IP FMIQGG F + P ++E
Sbjct: 47 HRVIPGFMIQGGG---FTEQMQQKKPNPPIKNE-AD------------------------ 78
Query: 128 FNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNV- 186
NG L++ G +++A T ++ SQFFI +A LD
Sbjct: 79 -NG-----------------LRNT-RGTIAMARTADKDSATSQFFINVADNAFLDHGQRD 119
Query: 187 ----VFGCVRQGFGVAREVSYVE-----AENDKPLVTCTIT 218
VFG V +G VA ++S V + P I
Sbjct: 120 FGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVIL 160
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin,
peptidyl prolyl isomerase, ppiase, TLP,; 2.39A
{Arabidopsis thaliana}
Length = 369
Score = 102 bits (254), Expect = 3e-24
Identities = 34/188 (18%), Positives = 56/188 (29%), Gaps = 38/188 (20%)
Query: 21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGD 80
+ I L + P TA NF L + + G R F++Q GD
Sbjct: 184 NIEDCVFRIVLDGYNAPVTAGNFVDLVERHF----------YDGMEIQRS-DGFVVQTGD 232
Query: 81 ITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPC 140
+ R +P ++ G+ T F G+ E
Sbjct: 233 PEGPAEGFIDPSTEKT----------------RTVPLEIMVTGEKTPFYGSTLE---ELG 273
Query: 141 FEDENFKLKHKFEGQLSLANTG-HPNTNNSQFFI-------TLAPCPHLDGKNVVFGCVR 192
+ G +++A ++ +SQ F T + LDG+ VFG V
Sbjct: 274 LYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVT 333
Query: 193 QGFGVARE 200
+
Sbjct: 334 DNEDFLAD 341
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 89.4 bits (222), Expect = 2e-21
Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 16/129 (12%)
Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
K N+YFK + Y+ A IK+Y+Q+ YY N + L+
Sbjct: 17 KTQANDYFK-------AKDYENA---IKFYSQAIELNPSNA--IYYG----NRSLAYLRT 60
Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
+ Y A+ + ++ +K +RR + +++ F L+DYE + + P+D+ +
Sbjct: 61 ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMK 120
Query: 388 IAFVRKQMR 396
K ++
Sbjct: 121 YQECNKIVK 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 88.0 bits (219), Expect = 2e-21
Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 16/126 (12%)
Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
KN GNEYFK + Y A ++ YN++ + + Y+ N AA K
Sbjct: 17 KNKGNEYFK-------KGDYPTA---MRHYNEAVKRDPENA--ILYS----NRAACLTKL 60
Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
++RA++ CD + ++ +K R+ V+M + + + YE AL + P++++ +
Sbjct: 61 MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREG 120
Query: 388 IAFVRK 393
+ +
Sbjct: 121 VRNCLR 126
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 86.9 bits (216), Expect = 7e-21
Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 16/130 (12%)
Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
KN GNE F+ + Y +A +K Y ++ + + Y+ N AA K
Sbjct: 20 KNKGNECFQ-------KGDYPQA---MKHYTEAIKRNPKDA--KLYS----NRAACYTKL 63
Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
++ A+ C++ + +EP +K R+ A +M ++ + + Y++ALDL + ++
Sbjct: 64 LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 123
Query: 388 IAFVRKQMRH 397
+
Sbjct: 124 YQRCMMAQYN 133
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 85.4 bits (212), Expect = 3e-20
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 16/120 (13%)
Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
K GN F RKY +A Y ++ ++ YYT N A LK
Sbjct: 13 KEQGNRLFV-------GRKYPEA---AACYGRAITRNPLVA--VYYT----NRALCYLKM 56
Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
+ ++A+ C L ++ +VKA F G+ Q+ M ++++ + + ++A L + +
Sbjct: 57 QQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 116
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 84.2 bits (209), Expect = 6e-20
Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 16/129 (12%)
Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
K GNE K ++ A + +Y ++ Y+ N AA K
Sbjct: 16 KTEGNEQMK-------VENFEAA---VHFYGKAIELNPANA--VYFC----NRAAAYSKL 59
Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
Y A+ C+ + ++P KA R G A S+N + + Y++AL+L P+++
Sbjct: 60 GNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSN 119
Query: 388 IAFVRKQMR 396
+ ++R
Sbjct: 120 LKIAELKLR 128
Score = 28.3 bits (64), Expect = 2.5
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
+ L G Q+ + NFE + Y +A++L P +
Sbjct: 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN 45
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 83.4 bits (207), Expect = 8e-20
Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 16/127 (12%)
Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
K GN+ A ++ Y+++ H Y+ N +A K
Sbjct: 8 KEKGNKALS-------VGNIDDA---LQCYSEAIKLDPHNH--VLYS----NRSAAYAKK 51
Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
Y++A + ++P+ K R+ A +N FE+ + YE+ L N+ Q+ +
Sbjct: 52 GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEG 111
Query: 388 IAFVRKQ 394
+ + +
Sbjct: 112 LQNMEAR 118
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 81.9 bits (203), Expect = 4e-19
Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 18/131 (13%)
Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
+ G EYF + + A +K Y + + + Y+ N AA K
Sbjct: 8 RLEGKEYFT-------KSDWPNA---VKAYTEMIKRAPEDA--RGYS----NRAAALAKL 51
Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP--NDQQIL 385
++ AI C+ + +PN V+A R+ AQ+++ + L+ + A N+
Sbjct: 52 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA 111
Query: 386 KEIAFVRKQMR 396
+EI + +
Sbjct: 112 REIDQLYYKAS 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 83.4 bits (206), Expect = 2e-18
Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 16/144 (11%)
Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
K GN F RKY +A Y ++ ++ YYT N A LK
Sbjct: 8 KEQGNRLFV-------GRKYPEA---AACYGRAITRNPLVA--VYYT----NRALCYLKM 51
Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
+ ++A+ C L ++ +VKA F G+ Q+ M ++++ + + ++A L + +
Sbjct: 52 QQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 111
Query: 388 IAFVRKQMRHHLNLEKMTYARMFQ 411
++ + R+ Q
Sbjct: 112 DIPSALRIAKKKRWNSIEERRIHQ 135
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 80.5 bits (199), Expect = 3e-18
Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 18/131 (13%)
Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
K+ GN +++Y KA I Y Q+ S Y + N AA
Sbjct: 15 KSEGNAAMA-------RKEYSKA---IDLYTQALSIAPANP--IYLS----NRAAAYSAS 58
Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN--DQQIL 385
+++A + +++P KA R G A+ M +++ + YE+ ++ N +
Sbjct: 59 GQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMK 118
Query: 386 KEIAFVRKQMR 396
+ + ++++
Sbjct: 119 RGLETTKRKIE 129
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 83.1 bits (206), Expect = 1e-17
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
S E + R DA KY+ ++ + Y + + K
Sbjct: 238 IESAEELIRDGRYTDATSKYESVMKT------------EPSVAEYTVRSKERICHCFSKD 285
Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
+ AI +C ++L MEP+NV AL R A + +++ +QDYE A + NDQQI +
Sbjct: 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREG 345
Query: 388 IAFVRKQMR 396
+ ++ ++
Sbjct: 346 LEKAQRLLK 354
Score = 73.5 bits (181), Expect = 1e-14
Identities = 20/141 (14%), Positives = 45/141 (31%), Gaps = 16/141 (11%)
Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
G + ++ DA ++ AV A A V L
Sbjct: 7 LELGKKLLAAGQLADALSQFHAAVDG----------------DPDNYIAYYRRATVFLAM 50
Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
K A+ ++ ++ + A +RG + ++ D+++ L P++Q+ +
Sbjct: 51 GKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEA 110
Query: 388 IAFVRKQMRHHLNLEKMTYAR 408
+ + K + A
Sbjct: 111 ESQLVKADEMQRLRSQALDAF 131
Score = 64.2 bits (157), Expect = 2e-11
Identities = 19/163 (11%), Positives = 52/163 (31%), Gaps = 33/163 (20%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVR--------------------YIKWYNQSQSKTQQKH 308
G+ K ++ +A+ +KK ++ + +Q+
Sbjct: 76 QRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD 135
Query: 309 FR---SYYTAAL----------LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRG 355
+ ++ L A +K ++AI+ ++ +N +A ++
Sbjct: 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKIS 195
Query: 356 RAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 398
+ + E L + + L L + ++ V+K +
Sbjct: 196 TLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 238
Score = 58.8 bits (143), Expect = 9e-10
Identities = 12/80 (15%), Positives = 28/80 (35%)
Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 375
L + L A++ + +P+N A +RR ++M + L D + +
Sbjct: 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI 64
Query: 376 DLLPNDQQILKEIAFVRKQM 395
L + + + +
Sbjct: 65 ALKMDFTAARLQRGHLLLKQ 84
Score = 46.5 bits (111), Expect = 9e-06
Identities = 11/126 (8%), Positives = 36/126 (28%), Gaps = 28/126 (22%)
Query: 271 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY 330
+ K A K A + +S T A ++ + + +
Sbjct: 161 AECFIKEGEPRKAISDLKAASK----------------LKSDNTEAFYKISTLYYQLGDH 204
Query: 331 KRAINLCDDILLMEPNNVKALFRRGRAQ------------VSMNNFEQGLQDYEQALDLL 378
+ +++ + L ++ ++ + + + + + YE +
Sbjct: 205 ELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 264
Query: 379 PNDQQI 384
P+ +
Sbjct: 265 PSVAEY 270
Score = 34.6 bits (80), Expect = 0.060
Identities = 6/35 (17%), Positives = 15/35 (42%)
Query: 347 NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
+V+ G+ ++ L + A+D P++
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN 36
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 82.0 bits (203), Expect = 4e-17
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 12/130 (9%)
Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
S E + R DA KY+ ++ + Y + + K
Sbjct: 261 IESAEELIRDGRYTDATSKYESVMKT------------EPSIAEYTVRSKERICHCFSKD 308
Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
+ AI +C ++L MEP+NV AL R A + +++ +QDYE A + NDQQI +
Sbjct: 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREG 368
Query: 388 IAFVRKQMRH 397
+ ++ ++
Sbjct: 369 LEKAQRLLKQ 378
Score = 72.8 bits (179), Expect = 3e-14
Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)
Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
G + ++ DA ++ AV A A V L
Sbjct: 30 LELGKKLLAAGQLADALSQFHAAVDG----------------DPDNYIAYYRRATVFLAM 73
Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
K A+ ++ ++ + A +RG + ++ D+++ L P++ + +
Sbjct: 74 GKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEA 133
Query: 388 IAFVRK--QMRHHLNL 401
+ + K +M+ +
Sbjct: 134 QSQLIKSDEMQRLRSQ 149
Score = 66.2 bits (162), Expect = 5e-12
Identities = 18/156 (11%), Positives = 50/156 (32%), Gaps = 20/156 (12%)
Query: 242 PPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQ 301
P E+ ++ + ++ ++M+ + + F A K +
Sbjct: 125 PSENEEKEAQSQLIKSDEMQRLR----SQALNAFGSGDYTAAIAFLDKILE--------- 171
Query: 302 SKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSM 361
+ A +K ++AI+ ++ +N +A ++ +
Sbjct: 172 -------VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQL 224
Query: 362 NNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH 397
+ E L + + L L + ++ V+K +
Sbjct: 225 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 260
Score = 65.9 bits (161), Expect = 7e-12
Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 1/130 (0%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
G+ K ++ +A+ +KK ++ + + Q + +S L + A
Sbjct: 99 QRGHLLLKQGKLDEAEDDFKKVLK-SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG 157
Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 388
Y AI D IL + + + R + + + D + A L ++ + +I
Sbjct: 158 DYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKI 217
Query: 389 AFVRKQMRHH 398
+ + Q+ H
Sbjct: 218 STLYYQLGDH 227
Score = 59.3 bits (144), Expect = 9e-10
Identities = 12/104 (11%), Positives = 32/104 (30%), Gaps = 6/104 (5%)
Query: 296 WYNQSQSKTQQKHF----RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKAL 351
++ + + L + L A++ + +P+N A
Sbjct: 6 HHSSGVDLGTENLYFQSMADV--EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAY 63
Query: 352 FRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 395
+RR ++M + L D + + L + + + +
Sbjct: 64 YRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQ 107
Score = 57.0 bits (138), Expect = 4e-09
Identities = 16/131 (12%), Positives = 46/131 (35%), Gaps = 8/131 (6%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
Y++L + + ++ ++ +Q + + + L+ A ++
Sbjct: 216 KISTLYYQLGDHELSLSEVRECLKL----DQDHKRCFAHYKQVKKLNKLIESAEELIRDG 271
Query: 329 AYKRAINLCDDILLMEPNN----VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 384
Y A + + ++ EP+ V++ R + ++ + L + P++
Sbjct: 272 RYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNA 331
Query: 385 LKEIAFVRKQM 395
LK+ A
Sbjct: 332 LKDRAEAYLIE 342
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 75.4 bits (186), Expect = 8e-17
Identities = 26/136 (19%), Positives = 52/136 (38%), Gaps = 24/136 (17%)
Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
K GN+ +K ++ + A +K Y++++ +Y T N AAV +
Sbjct: 8 KELGNDAYK-------KKDFDTA---LKHYDKAKELDPTNM--TYIT----NQAAVYFEK 51
Query: 328 KAYKRAINLCDDILLMEPNN-------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 380
Y + LC+ + + N KA R G + ++ + Y ++L
Sbjct: 52 GDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA-EHR 110
Query: 381 DQQILKEIAFVRKQMR 396
+LK+ K ++
Sbjct: 111 TPDVLKKCQQAEKILK 126
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 73.9 bits (182), Expect = 3e-16
Identities = 28/143 (19%), Positives = 54/143 (37%), Gaps = 24/143 (16%)
Query: 258 NQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAAL 317
N M D K+ GN +K Q+ ++KA Y+++
Sbjct: 2 NAMTDAAIAEKDLGNAAYK-------QKDFEKA---HVHYDKAIE------LDPSNITFY 45
Query: 318 LNMAAVQLKFKAYKRAINLCDDILLMEPNN-------VKALFRRGRAQVSMNNFEQGLQD 370
N AAV + K + + C+ + + KA+ R G A N+ +Q
Sbjct: 46 NNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQW 105
Query: 371 YEQALDLLPNDQQILKEIAFVRK 393
+ ++L D +++K++ + K
Sbjct: 106 FHRSLS-EFRDPELVKKVKELEK 127
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 75.9 bits (187), Expect = 4e-15
Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 16/130 (12%)
Query: 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 326
+K N+YFK +A + Y +A I+ + YY N + L+
Sbjct: 9 LKTQANDYFKAKDYENAIKFYSQA---IELNPSNAI---------YYG----NRSLAYLR 52
Query: 327 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 386
+ Y A+ + ++ +K +RR + +++ F L+DYE + + P+D+
Sbjct: 53 TECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKM 112
Query: 387 EIAFVRKQMR 396
+ K ++
Sbjct: 113 KYQECNKIVK 122
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 65.8 bits (161), Expect = 1e-13
Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 17/120 (14%)
Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
K GN FK Q Y++A + Y+Q + Q Y+ N A +K
Sbjct: 8 KEQGNSLFK-------QGLYREA---VHCYDQLITAQPQNP--VGYS----NKAMALIKL 51
Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
Y +AI +C L R Q + + + + + + +
Sbjct: 52 GEYTQAIQMCQQGLRYTSTAEHVAIRSK-LQYRLELAQGAVGSVQIPVVEVDELPEGYDR 110
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 68.3 bits (168), Expect = 3e-13
Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 18/124 (14%)
Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
+ G EYF + +A + Y + ++ + R Y N AA K
Sbjct: 143 RLEGKEYFTKSDWPNAVKAYTEMIKR-----------APEDARGYS-----NRAAALAKL 186
Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ--IL 385
++ AI C+ + +PN V+A R+ AQ+++ + L+ + A
Sbjct: 187 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA 246
Query: 386 KEIA 389
+EI
Sbjct: 247 REID 250
Score = 61.0 bits (149), Expect = 8e-11
Identities = 15/148 (10%), Positives = 45/148 (30%), Gaps = 17/148 (11%)
Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVR----YIKWYNQSQSKTQQKHFR---SYYTAAL--- 317
K + ++ + KK + + + + T+ ++ A
Sbjct: 76 KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVN 135
Query: 318 -------LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD 370
+ A+ +++ P + + R A + +F + + D
Sbjct: 136 PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD 195
Query: 371 YEQALDLLPNDQQILKEIAFVRKQMRHH 398
+A++ PN + A + ++ +
Sbjct: 196 CNKAIEKDPNFVRAYIRKATAQIAVKEY 223
Score = 59.1 bits (144), Expect = 4e-10
Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 17/115 (14%)
Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
K GN+++K + +A Y KA K N AA + +
Sbjct: 9 KAEGNKFYKARQFDEAIEHYNKAWEL------------HKDITYLN-----NRAAAEYEK 51
Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ 382
Y+ AI+ +D + ++ + N L D ++ ++
Sbjct: 52 GEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL 106
Score = 39.8 bits (94), Expect = 8e-04
Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 1/80 (1%)
Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 375
K + + AI + + + L R A+ +E + A+
Sbjct: 7 KEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAISTLNDAV 65
Query: 376 DLLPNDQQILKEIAFVRKQM 395
+ + K I+ ++
Sbjct: 66 EQGREMRADYKVISKSFARI 85
Score = 33.7 bits (78), Expect = 0.079
Identities = 5/36 (13%), Positives = 13/36 (36%)
Query: 345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 380
+ G F++ ++ Y +A +L +
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKD 37
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 63.3 bits (154), Expect = 2e-12
Identities = 16/126 (12%), Positives = 51/126 (40%), Gaps = 16/126 (12%)
Query: 261 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNM 320
+D++ I + +++ R+ +A+ ++ Y Y ++ +
Sbjct: 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY----------------DFYNVDYIMGL 76
Query: 321 AAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 380
AA+ + +++A +L + N+ +F G+ Q+ + + + +E + +
Sbjct: 77 AAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136
Query: 381 DQQILK 386
++ +K
Sbjct: 137 EKLKIK 142
Score = 44.4 bits (105), Expect = 9e-06
Identities = 11/83 (13%), Positives = 24/83 (28%)
Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 375
+ + A + A + + + NV + F+Q Y A
Sbjct: 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF 97
Query: 376 DLLPNDQQILKEIAFVRKQMRHH 398
L ND + + +++
Sbjct: 98 ALGKNDYTPVFHTGQCQLRLKAP 120
Score = 35.9 bits (83), Expect = 0.007
Identities = 4/60 (6%), Positives = 17/60 (28%)
Query: 339 DILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 398
DI + + + ++ + E+ + + + +A + +
Sbjct: 27 DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQF 86
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 66.4 bits (162), Expect = 5e-12
Identities = 20/155 (12%), Positives = 38/155 (24%), Gaps = 25/155 (16%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYN-----QSQSKTQQ--KHFR------ 310
+ + A Y A R ++ + ++ +
Sbjct: 412 GFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471
Query: 311 SYYTAALLNMAAVQLKF-------KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNN 363
Y L + V ++ A+ L E G A +
Sbjct: 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531
Query: 364 FEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 398
++ + Q L L ND + IA V +
Sbjct: 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIP 566
Score = 62.2 bits (151), Expect = 1e-10
Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 9/115 (7%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
G F + M A ++ A+ +K ++ + A N+ K K
Sbjct: 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP---------WAATWANLGHAYRKLK 530
Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ 383
Y AI+ + LL+ N+ + + ++L + PN+
Sbjct: 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM 585
Score = 52.5 bits (126), Expect = 1e-07
Identities = 19/135 (14%), Positives = 43/135 (31%), Gaps = 20/135 (14%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSYYTA--- 315
G Y +N++ +A+R + K+ + W + S + +Y TA
Sbjct: 378 AVGIYYLCVNKISEARRYFSKSST-MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL 436
Query: 316 ------ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 369
L + ++ A + + L G + ++ + +
Sbjct: 437 FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAIN 496
Query: 370 DYEQALDLLPNDQQI 384
++ AL L+ Q
Sbjct: 497 HFQNALLLVKKTQSN 511
Score = 49.5 bits (118), Expect = 1e-06
Identities = 14/151 (9%), Positives = 39/151 (25%), Gaps = 21/151 (13%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVR----YIKWYN-----------------QSQSKTQQK 307
G Y L+ A+ YK+A+ + ++ + +
Sbjct: 205 LRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYS 264
Query: 308 HFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQG 367
+ + +L + + + R + + L + + F
Sbjct: 265 KEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDV 324
Query: 368 LQDYEQALDLLPNDQQILKEIAFVRKQMRHH 398
L + L++ P + + +
Sbjct: 325 LAITTKILEIDPYNLDVYPLHLASLHESGEK 355
Score = 47.9 bits (114), Expect = 4e-06
Identities = 11/126 (8%), Positives = 29/126 (23%), Gaps = 16/126 (12%)
Query: 256 QLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTA 315
+ +R++ Y ++ ++ +
Sbjct: 263 YSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE----------------KSSD 306
Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 375
LL A + + + IL ++P N+ + + +
Sbjct: 307 LLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV 366
Query: 376 DLLPND 381
D P
Sbjct: 367 DRHPEK 372
Score = 44.1 bits (104), Expect = 7e-05
Identities = 15/131 (11%), Positives = 25/131 (19%), Gaps = 18/131 (13%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAV-----RYIKWYNQSQSKTQQKHF-------------R 310
+ F +R D K + + S +
Sbjct: 310 CKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH 369
Query: 311 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD 370
L + L A M+P A + +Q +
Sbjct: 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISA 429
Query: 371 YEQALDLLPND 381
Y A L
Sbjct: 430 YTTAARLFQGT 440
Score = 34.4 bits (79), Expect = 0.077
Identities = 18/133 (13%), Positives = 37/133 (27%), Gaps = 6/133 (4%)
Query: 271 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY 330
KL A + + K + Q + V +
Sbjct: 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216
Query: 331 KRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAF 390
RA + L+++ +A + N+ ++++ L L ++ AF
Sbjct: 217 DRAKECYKEALMVDAKCYEAFDQLVS-----NHLLTADEEWDLVLKLNY-STYSKEDAAF 270
Query: 391 VRKQMRHHLNLEK 403
+R LN
Sbjct: 271 LRSLYMLKLNKTS 283
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 66.0 bits (161), Expect = 7e-12
Identities = 16/139 (11%), Positives = 39/139 (28%), Gaps = 16/139 (11%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
+ + + ++ + + A+ + V+ +
Sbjct: 28 MLADAELGMGDTTAGEMAVQRGLA----------------LHPGHPEAVARLGRVRWTQQ 71
Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 388
+ A L P + G A E Y +A LLP + I ++
Sbjct: 72 RHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQL 131
Query: 389 AFVRKQMRHHLNLEKMTYA 407
R+++ L+ ++
Sbjct: 132 LNWRRRLCDWRALDVLSAQ 150
Score = 51.4 bits (123), Expect = 3e-07
Identities = 15/86 (17%), Positives = 27/86 (31%)
Query: 313 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 372
A L +A +L L + P + +A+ R GR + + + +
Sbjct: 22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81
Query: 373 QALDLLPNDQQILKEIAFVRKQMRHH 398
QA D P I + +
Sbjct: 82 QASDAAPEHPGIALWLGHALEDAGQA 107
Score = 46.4 bits (110), Expect = 1e-05
Identities = 12/69 (17%), Positives = 24/69 (34%)
Query: 330 YKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA 389
R + + P + A A++ M + G ++ L L P + + +
Sbjct: 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG 64
Query: 390 FVRKQMRHH 398
VR + H
Sbjct: 65 RVRWTQQRH 73
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 65.2 bits (159), Expect = 1e-11
Identities = 15/150 (10%), Positives = 40/150 (26%), Gaps = 18/150 (12%)
Query: 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHF--------- 309
+ I + L + +A + + K +
Sbjct: 106 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQ 165
Query: 310 ----RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFE 365
A+ + + + +R + + + P V A+ G + ++ +
Sbjct: 166 AHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQ 225
Query: 366 QGLQDYEQALDLLPNDQQILKEIAFVRKQM 395
+ L QA L P + ++ +
Sbjct: 226 RLLPVLCQAHGLTPQQVVAIASNGGGKQAL 255
Score = 64.0 bits (156), Expect = 3e-11
Identities = 16/139 (11%), Positives = 39/139 (28%), Gaps = 18/139 (12%)
Query: 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHFR----SY-- 312
+ I + L + +A + + K + +
Sbjct: 344 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQ 403
Query: 313 -------YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFE 365
A+ + + + +R + + + P V A+ G + ++ +
Sbjct: 404 AHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIV 463
Query: 366 QGLQDYEQALDLLPNDQQI 384
L + AL L ND +
Sbjct: 464 AQLSRPDPALAALTNDHLV 482
Score = 61.3 bits (149), Expect = 2e-10
Identities = 15/147 (10%), Positives = 41/147 (27%), Gaps = 18/147 (12%)
Query: 267 IKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHFR----SY----- 312
I ++G L + +A + + K + +
Sbjct: 177 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG 236
Query: 313 ----YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGL 368
A+ + + + +R + + + P V A+ + ++ ++ L
Sbjct: 237 LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLL 296
Query: 369 QDYEQALDLLPNDQQILKEIAFVRKQM 395
QA L P + ++ +
Sbjct: 297 PVLCQAHGLTPQQVVAIASNGGGKQAL 323
Score = 59.8 bits (145), Expect = 7e-10
Identities = 15/148 (10%), Positives = 41/148 (27%), Gaps = 18/148 (12%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHFR----SY------- 312
++G L + +A + + S K + +
Sbjct: 247 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLT 306
Query: 313 --YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD 370
A+ + + + +R + + + P V A+ + ++ ++ L
Sbjct: 307 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPV 366
Query: 371 YEQALDLLPNDQQILKEIAFVRKQMRHH 398
QA L P + ++ +
Sbjct: 367 LCQAHGLTPEQVVAIASNGGGKQALETV 394
Score = 59.0 bits (143), Expect = 1e-09
Identities = 14/145 (9%), Positives = 40/145 (27%), Gaps = 18/145 (12%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHFR----SY------- 312
++ L + +A + + K + +
Sbjct: 281 SNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 340
Query: 313 --YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD 370
A+ + + + +R + + + P V A+ G + ++ ++ L
Sbjct: 341 PQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPV 400
Query: 371 YEQALDLLPNDQQILKEIAFVRKQM 395
QA L P + ++ +
Sbjct: 401 LCQAHGLTPEQVVAIASHDGGKQAL 425
Score = 57.5 bits (139), Expect = 4e-09
Identities = 10/86 (11%), Positives = 28/86 (32%)
Query: 313 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 372
A+ + + + +R + + + P V A+ + ++ ++ L
Sbjct: 71 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC 130
Query: 373 QALDLLPNDQQILKEIAFVRKQMRHH 398
QA L P + ++ +
Sbjct: 131 QAHGLTPEQVVAIASHDGGKQALETV 156
Score = 55.1 bits (133), Expect = 2e-08
Identities = 14/122 (11%), Positives = 36/122 (29%), Gaps = 9/122 (7%)
Query: 274 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA 333
+ A ++ + Q+ T Q A+ + + + +R
Sbjct: 75 IASHDGGKQALETVQRL---LPVLCQAHGLTPQ------QVVAIASHDGGKQALETVQRL 125
Query: 334 INLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK 393
+ + + P V A+ + ++ + L QA L P + ++
Sbjct: 126 LPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQ 185
Query: 394 QM 395
+
Sbjct: 186 AL 187
Score = 41.7 bits (98), Expect = 4e-04
Identities = 11/84 (13%), Positives = 24/84 (28%)
Query: 312 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDY 371
+ V + L L + P V A+ + ++ ++ L
Sbjct: 36 GQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVL 95
Query: 372 EQALDLLPNDQQILKEIAFVRKQM 395
QA L P + ++ +
Sbjct: 96 CQAHGLTPQQVVAIASHDGGKQAL 119
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 60.9 bits (148), Expect = 2e-11
Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 16/113 (14%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
G ++ + DAQ+ ++ Y L + A +
Sbjct: 23 ALGFNQYQAGKWDDAQKIFQALCML----------------DHYDARYFLGLGACRQSLG 66
Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
Y++A+ LM+ N + F + + + + + A L
Sbjct: 67 LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119
Score = 44.3 bits (105), Expect = 7e-06
Identities = 13/83 (15%), Positives = 30/83 (36%)
Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 375
L + Q + + A + + +++ + + G + S+ +EQ LQ Y
Sbjct: 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGA 79
Query: 376 DLLPNDQQILKEIAFVRKQMRHH 398
+ N+ + A Q+
Sbjct: 80 LMDINEPRFPFHAAECHLQLGDL 102
Score = 36.6 bits (85), Expect = 0.004
Identities = 7/71 (9%), Positives = 21/71 (29%), Gaps = 7/71 (9%)
Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
L + ++ L+ G Q ++ + ++ L D +
Sbjct: 5 GTLAMLRGL-------SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLG 57
Query: 388 IAFVRKQMRHH 398
+ R+ + +
Sbjct: 58 LGACRQSLGLY 68
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 63.9 bits (156), Expect = 2e-11
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 7/123 (5%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
G F+ A++ + A+ IK + + + L N+ V K K
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK-------WEPLLNNLGHVCRKLK 250
Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 388
Y A++ L++ P N G M NFE + + AL L +D + +
Sbjct: 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTML 310
Query: 389 AFV 391
Sbjct: 311 GHC 313
Score = 56.5 bits (137), Expect = 5e-09
Identities = 19/154 (12%), Positives = 43/154 (27%), Gaps = 27/154 (17%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYN-----QSQSKTQQ--KHFR------ 310
G+ + + A Y A + ++ + ++ + F
Sbjct: 130 AYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA 189
Query: 311 SYYTAALLNMAAVQLK-------FKAYKRAINLCDDIL--LMEPNNVKALFRRGRAQVSM 361
+ + V + K + A+ I + L G +
Sbjct: 190 PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249
Query: 362 NNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 395
+ + L + QAL L+P + I ++ M
Sbjct: 250 KKYAEALDYHRQALVLIPQNASTYSAIGYIHSLM 283
Score = 51.1 bits (123), Expect = 2e-07
Identities = 19/134 (14%), Positives = 39/134 (29%), Gaps = 21/134 (15%)
Query: 269 NSGNEYFKLNRMHD-AQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSYYTA-- 315
G Y + ++ A+R KA ++ W S + +Y+TA
Sbjct: 95 AVGCYYLMVGHKNEHARRYLSKATT-LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ 153
Query: 316 -------ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGL 368
+L + K A L + P + + G ++
Sbjct: 154 LMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAE 213
Query: 369 QDYEQALDLLPNDQ 382
+ + AL+ +
Sbjct: 214 KWFLDALEKIKAIG 227
Score = 41.9 bits (99), Expect = 3e-04
Identities = 10/66 (15%), Positives = 25/66 (37%)
Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 375
++++A +K L ++ +P + L V +N + + +
Sbjct: 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLV 83
Query: 376 DLLPND 381
DL P++
Sbjct: 84 DLYPSN 89
Score = 35.0 bits (81), Expect = 0.032
Identities = 5/55 (9%), Positives = 16/55 (29%)
Query: 331 KRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL 385
K + + + + N+ + +F+ + ++ P L
Sbjct: 5 KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCL 59
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 64.4 bits (157), Expect = 2e-11
Identities = 31/153 (20%), Positives = 57/153 (37%), Gaps = 19/153 (12%)
Query: 244 FPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSK 303
F E N E +L E + +++++G F N A KKA+
Sbjct: 219 FEEQLDKNNEDEKLK--EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL---------- 266
Query: 304 TQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNN 363
SY MA + N D L ++ NN + RG+ + N
Sbjct: 267 --FPRVNSYI-----YMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319
Query: 364 FEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR 396
++Q +D+++A +L P + ++A + +
Sbjct: 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYREN 352
Score = 62.1 bits (151), Expect = 1e-10
Identities = 20/161 (12%), Positives = 55/161 (34%), Gaps = 28/161 (17%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHF----RSY------- 312
++ N+ D + + +A R ++ T + F + Y
Sbjct: 343 QLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402
Query: 313 --YTAALLNMAAVQLKFKA---------YKRAINLCDDILLMEPNNVKALFRRGRAQVSM 361
+ +A + K + A NL + ++P + +A + ++
Sbjct: 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQ 462
Query: 362 NNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE 402
+ ++ + +E++ DL ++ L+ I F + + +
Sbjct: 463 EDIDEAITLFEESADLARTMEEKLQAITF-AEAAKVQQRIR 502
Score = 57.8 bits (140), Expect = 3e-09
Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 18/118 (15%)
Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
K+ GN++F+ + DA + Y A+ ++ N++A +
Sbjct: 10 KDKGNQFFRNKKYDDAIKYYNWALEL-----------KEDP------VFYSNLSACYVSV 52
Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ-ALDLLPNDQQI 384
K+ + + L ++P+ K L RR A + F + D +L+ ND I
Sbjct: 53 GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASI 110
Score = 57.4 bits (139), Expect = 4e-09
Identities = 16/115 (13%), Positives = 40/115 (34%), Gaps = 4/115 (3%)
Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
S +F + + Y ++ K S ++ SY A A
Sbjct: 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA---- 216
Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ 382
+ ++ ++ ++ ++ +L G + N+ +D ++A++L P
Sbjct: 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN 271
Score = 54.7 bits (132), Expect = 2e-08
Identities = 15/132 (11%), Positives = 41/132 (31%), Gaps = 20/132 (15%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHFR---SYYTAAL-- 317
N + + KA++ + +Y++ Q +++ + A
Sbjct: 275 YMALIMADRNDSTEYYNYFDKALK-LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL 333
Query: 318 --------LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 369
+ +A + + + L + P + N+F++ L+
Sbjct: 334 DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALK 393
Query: 370 DYEQALDLLPND 381
Y+ A++L
Sbjct: 394 QYDLAIELENKL 405
Score = 54.4 bits (131), Expect = 4e-08
Identities = 21/154 (13%), Positives = 45/154 (29%), Gaps = 27/154 (17%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHFR---SYYTAAL--- 317
+ G F L A + + KA + + ++ F + ++ A
Sbjct: 309 HRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF 368
Query: 318 -------LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRA---------QVSM 361
A + + +A+ D + +E ++
Sbjct: 369 PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV 428
Query: 362 NNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 395
NF + E+A L P +Q +A ++ Q
Sbjct: 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQ 462
Score = 47.4 bits (113), Expect = 6e-06
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 313 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 372
Y AL + + K Y AI + L ++ + V VS+ + ++ ++
Sbjct: 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMST 63
Query: 373 QALDLLPNDQQILKEIAFVRKQM 395
+AL+L P+ ++L A + +
Sbjct: 64 KALELKPDYSKVLLRRASANEGL 86
Score = 33.6 bits (77), Expect = 0.12
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 380
AL +G ++ ++ Y AL+L +
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED 38
Score = 30.9 bits (70), Expect = 0.83
Identities = 10/146 (6%), Positives = 27/146 (18%), Gaps = 13/146 (8%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
+ L + DA + + +L +
Sbjct: 78 RRASANEGLGKFADAMFDLSVLSLNGDFNDA-------------SIEPMLERNLNKQAMS 124
Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 388
K D + + + + + +
Sbjct: 125 KLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESN 184
Query: 389 AFVRKQMRHHLNLEKMTYARMFQNGK 414
++ M NL K + + +
Sbjct: 185 EADKELMNGLSNLYKRSPESYDKADE 210
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 61.7 bits (150), Expect = 3e-11
Identities = 19/123 (15%), Positives = 39/123 (31%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
+ + + A +++ + + T + +A K +
Sbjct: 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR 68
Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 388
Y +A ++L PNNV L QV + L+ YE+ L L ++ +
Sbjct: 69 NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFL 128
Query: 389 AFV 391
Sbjct: 129 GNY 131
Score = 59.4 bits (144), Expect = 2e-10
Identities = 19/130 (14%), Positives = 44/130 (33%), Gaps = 19/130 (14%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMA-AVQLKF 327
+ DA R Y+K ++ + AA + + L
Sbjct: 93 ACAEMQVCRGQEKDALRMYEKILQ----------------LEADNLAANIFLGNYYYLTA 136
Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND--QQIL 385
+ K+ + L A +R G +++ +E+ ++ + P+ Q+ L
Sbjct: 137 EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTL 196
Query: 386 KEIAFVRKQM 395
+I + K++
Sbjct: 197 DKILRIEKEV 206
Score = 54.4 bits (131), Expect = 9e-09
Identities = 24/151 (15%), Positives = 50/151 (33%), Gaps = 10/151 (6%)
Query: 249 KSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKH 308
N + ++ +V + + S +L + R Y KA +Y + K
Sbjct: 32 ALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKA---YLFYKELLQK----- 83
Query: 309 FRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRA-QVSMNNFEQG 367
L A +Q+ K A+ + + IL +E +N+ A G ++ ++
Sbjct: 84 -APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKK 142
Query: 368 LQDYEQALDLLPNDQQILKEIAFVRKQMRHH 398
L+ + L Q + +
Sbjct: 143 LETDYKKLSSPTKMQYARYRDGLSKLFTTRY 173
Score = 42.4 bits (100), Expect = 8e-05
Identities = 10/96 (10%), Positives = 31/96 (32%), Gaps = 16/96 (16%)
Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRR----------------GRAQV 359
+L + ++ +A++ + + + + + A
Sbjct: 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK 65
Query: 360 SMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 395
N+++ Y++ L PN+ L+ A ++
Sbjct: 66 KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCR 101
Score = 32.0 bits (73), Expect = 0.24
Identities = 5/39 (12%), Positives = 16/39 (41%)
Query: 347 NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL 385
+V + ++ A + Q + + Q + L + ++
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMY 41
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 59.5 bits (144), Expect = 9e-11
Identities = 22/176 (12%), Positives = 54/176 (30%), Gaps = 30/176 (17%)
Query: 238 QDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNS--------------GNEYFKLNRMHDA 283
Q V + + E ++ +++ G Y N ++
Sbjct: 4 QAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNS 63
Query: 284 QRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343
Y++A++ + + + L A + + D L +
Sbjct: 64 LLAYRQALQL---------RGENAELYAALATVLYYQA----SQHMTAQTRAMIDKALAL 110
Query: 344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND---QQILKEIAFVRKQMR 396
+ N + AL N+ Q ++ +++ +DL Q+++ I + R
Sbjct: 111 DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQR 166
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 62.0 bits (151), Expect = 1e-10
Identities = 17/140 (12%), Positives = 42/140 (30%), Gaps = 13/140 (9%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHFRSYYTAALLNMAA 322
A ++Y A R ++ + +
Sbjct: 383 FFAEILTDRGDFDTAIKQYDIAKR-LEEVQEKIHVGIGPLIGKATILARQS-----SQDP 436
Query: 323 VQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ 382
QL + + AI L ++P + +A + ++ M ++ ++ +E + L
Sbjct: 437 TQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496
Query: 383 QILKEIAFVRKQMRHHLNLE 402
+ L+ F + + L
Sbjct: 497 EKLQATTF-AEAAKIQKRLR 515
Score = 59.7 bits (145), Expect = 7e-10
Identities = 30/156 (19%), Positives = 57/156 (36%), Gaps = 17/156 (10%)
Query: 258 NQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAAL 317
+Q + +KN GN +F ++A + Y+ A+ + Y
Sbjct: 19 SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAI-----------ELDPNEPVFYS---- 63
Query: 318 LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 377
N++A + ++ I L ++P++ KAL RR A S+ NF + D L L
Sbjct: 64 -NISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSL 121
Query: 378 LPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQNG 413
+ E R + + + ++ G
Sbjct: 122 NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRG 157
Score = 58.6 bits (142), Expect = 2e-09
Identities = 17/128 (13%), Positives = 44/128 (34%), Gaps = 17/128 (13%)
Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
+G +F N + DAQ ++++ SY +A
Sbjct: 247 CYTGIFHFLKNNLLDAQVLLQESINL------------HPTPNSYI-----FLALTLADK 289
Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
+ + + + P + RG+ + +++ +D+++A L P + +
Sbjct: 290 ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQ 349
Query: 388 IAFVRKQM 395
+A + +
Sbjct: 350 LACLLYKQ 357
Score = 55.9 bits (135), Expect = 1e-08
Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 5/110 (4%)
Query: 286 KYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP 345
+ Q + + + R Y L N K + AI + ++P
Sbjct: 2 SHMNG---EPDIAQLKGLSPSQ--RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP 56
Query: 346 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 395
N +S + E+ ++ +AL++ P+ + L A + +
Sbjct: 57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESL 106
Score = 54.7 bits (132), Expect = 2e-08
Identities = 17/144 (11%), Positives = 42/144 (29%), Gaps = 16/144 (11%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
+ G YF L +A+ ++KA + +A + K
Sbjct: 315 HRGQMYFILQDYKNAKEDFQKAQSL----------------NPENVYPYIQLACLLYKQG 358
Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 388
+ + ++ L P + +F+ ++ Y+ A L ++I I
Sbjct: 359 KFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418
Query: 389 AFVRKQMRHHLNLEKMTYARMFQN 412
+ + ++ +
Sbjct: 419 GPLIGKATILARQSSQDPTQLDEE 442
Score = 53.6 bits (129), Expect = 6e-08
Identities = 14/130 (10%), Positives = 33/130 (25%), Gaps = 8/130 (6%)
Query: 261 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQ--------SKTQQKHFRSY 312
E++ + + + + S S Q+ + +
Sbjct: 148 ENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSAT 207
Query: 313 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 372
L+ + Y ++ + N AL G NN +
Sbjct: 208 DEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267
Query: 373 QALDLLPNDQ 382
++++L P
Sbjct: 268 ESINLHPTPN 277
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 61.2 bits (148), Expect = 4e-10
Identities = 16/142 (11%), Positives = 42/142 (29%), Gaps = 18/142 (12%)
Query: 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHFR----SY 312
D + I ++ L + +A + + K + +
Sbjct: 258 DQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVL 317
Query: 313 ---------YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNN 363
A+ + + + +R + + + P+ V A+ G + ++
Sbjct: 318 CQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET 377
Query: 364 FEQGLQDYEQALDLLPNDQQIL 385
++ L QA L P+ +
Sbjct: 378 VQRLLPVLCQAHGLTPDQVVAI 399
Score = 59.3 bits (143), Expect = 1e-09
Identities = 12/145 (8%), Positives = 38/145 (26%), Gaps = 18/145 (12%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYI-----KWYNQSQSKTQQKHFR----SY------- 312
++ L + +A + K + +
Sbjct: 604 SNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 663
Query: 313 --YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD 370
A+ + + + +R + + + V A+ + ++ ++ L
Sbjct: 664 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPV 723
Query: 371 YEQALDLLPNDQQILKEIAFVRKQM 395
QA L P+ + ++ +
Sbjct: 724 LCQAHGLTPDQVVAIASNGGGKQAL 748
Score = 56.6 bits (136), Expect = 9e-09
Identities = 16/152 (10%), Positives = 44/152 (28%), Gaps = 18/152 (11%)
Query: 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHFR----SY 312
D + I ++G L + +A + + K + +
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 588
Query: 313 ---------YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNN 363
A+ + + + +R + + + P V A+ + ++
Sbjct: 589 CQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALET 648
Query: 364 FEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 395
++ L QA L P+ + ++ +
Sbjct: 649 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 680
Score = 55.8 bits (134), Expect = 1e-08
Identities = 15/155 (9%), Positives = 42/155 (27%), Gaps = 18/155 (11%)
Query: 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHFR----SY 312
+ I + L M +A + + K + +
Sbjct: 224 AQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVL 283
Query: 313 ---------YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNN 363
A+ + + + +R + + + P+ V A+ + ++
Sbjct: 284 CQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALET 343
Query: 364 FEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 398
++ L QA L P+ + ++ +
Sbjct: 344 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETV 378
Score = 54.7 bits (131), Expect = 3e-08
Identities = 13/134 (9%), Positives = 38/134 (28%), Gaps = 16/134 (11%)
Query: 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMA 321
+ I ++ L + +A A+ +
Sbjct: 190 AQVVAIASNNGGKQALETVQRLLPVLCQAHG----------------LTPAQVVAIASHD 233
Query: 322 AVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
+ + +R + + + P+ V A+ + ++ ++ L QA L P+
Sbjct: 234 GGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQ 293
Query: 382 QQILKEIAFVRKQM 395
+ ++ +
Sbjct: 294 VVAIASHGGGKQAL 307
Score = 52.7 bits (126), Expect = 1e-07
Identities = 17/154 (11%), Positives = 44/154 (28%), Gaps = 17/154 (11%)
Query: 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQ---QKHFRSY- 312
D + I ++G L + +A + + + Q+
Sbjct: 360 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLC 419
Query: 313 --------YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNF 364
A+ + + + +R + + + P V A+ + ++
Sbjct: 420 QAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETV 479
Query: 365 EQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 398
+Q L QA L P+ + ++ +
Sbjct: 480 QQLLPVLCQAHGLTPDQVVAIASNIGGKQALATV 513
Score = 50.8 bits (121), Expect = 7e-07
Identities = 14/132 (10%), Positives = 37/132 (28%), Gaps = 16/132 (12%)
Query: 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAV 323
+ I + L + +A A+ +
Sbjct: 463 VVAIASHDGGKQALETVQQLLPVLCQAHG----------------LTPDQVVAIASNIGG 506
Query: 324 QLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ 383
+ +R + + + P+ V A+ G + ++ ++ L QA L P+
Sbjct: 507 KQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVV 566
Query: 384 ILKEIAFVRKQM 395
+ ++ +
Sbjct: 567 AIASNGGGKQAL 578
Score = 50.4 bits (120), Expect = 8e-07
Identities = 15/119 (12%), Positives = 35/119 (29%), Gaps = 16/119 (13%)
Query: 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 326
I ++G L + +A A+ + +
Sbjct: 670 IASNGGGKQALETVQRLLPVLCQAHG----------------LTQEQVVAIASNNGGKQA 713
Query: 327 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL 385
+ +R + + + P+ V A+ G + ++ ++ L QA L P +
Sbjct: 714 LETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAI 772
Score = 50.0 bits (119), Expect = 1e-06
Identities = 10/85 (11%), Positives = 28/85 (32%)
Query: 299 QSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQ 358
++ + A+ + + + +R + + + P V A+ +
Sbjct: 177 RNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGK 236
Query: 359 VSMNNFEQGLQDYEQALDLLPNDQQ 383
++ ++ L QA L P+
Sbjct: 237 QALETMQRLLPVLCQAHGLPPDQVV 261
Score = 46.6 bits (110), Expect = 1e-05
Identities = 12/114 (10%), Positives = 31/114 (27%), Gaps = 9/114 (7%)
Query: 274 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA 333
N A ++ + Q+ T A+ + + + +R
Sbjct: 704 IASNNGGKQALETVQRL---LPVLCQAHGLTPD------QVVAIASNGGGKQALETVQRL 754
Query: 334 INLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
+ + + P V A+ + ++ ++ L Q L +
Sbjct: 755 LPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIAS 808
Score = 46.2 bits (109), Expect = 2e-05
Identities = 12/113 (10%), Positives = 37/113 (32%), Gaps = 9/113 (7%)
Query: 283 AQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 342
A ++ + Q+ T A+ + + + ++ + +
Sbjct: 441 ALETVQRL---LPVLCQTHGLTPA------QVVAIASHDGGKQALETVQQLLPVLCQAHG 491
Query: 343 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 395
+ P+ V A+ + ++ ++ L QA L P+ + ++ +
Sbjct: 492 LTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 544
Score = 43.9 bits (103), Expect = 9e-05
Identities = 12/117 (10%), Positives = 32/117 (27%), Gaps = 10/117 (8%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
+ A ++ + Q A+ + + +
Sbjct: 835 DQVVAIASNIGGKQALETVQRLL---------PVLCQDHGLTPDQVVAIASNIGGKQALE 885
Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL 385
+R + + + + V A+ G Q ++ ++ L Q L P+ +
Sbjct: 886 TVQRLLPVLCQDHGLTLDQVVAIASNGGKQ-ALETVQRLLPVLCQDHGLTPDQVVAI 941
Score = 41.6 bits (97), Expect = 4e-04
Identities = 11/88 (12%), Positives = 25/88 (28%)
Query: 308 HFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQG 367
+ + V + L L + P V A+ + ++ ++
Sbjct: 152 QLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRL 211
Query: 368 LQDYEQALDLLPNDQQILKEIAFVRKQM 395
L QA L P + ++ +
Sbjct: 212 LPVLCQAHGLTPAQVVAIASHDGGKQAL 239
Score = 40.4 bits (94), Expect = 0.001
Identities = 11/105 (10%), Positives = 31/105 (29%), Gaps = 9/105 (8%)
Query: 283 AQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 342
A ++ + Q+ T A+ + + + +R + +
Sbjct: 747 ALETVQRL---LPVLCQAHGLTPA------QVVAIASNIGGKQALETVQRLLPVLCQDHG 797
Query: 343 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
+ V A+ + ++ ++ L QA L + +
Sbjct: 798 LTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIAS 842
Score = 40.4 bits (94), Expect = 0.001
Identities = 8/75 (10%), Positives = 25/75 (33%)
Query: 313 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 372
A+ + + + +R + + + + V A+ + ++ ++ L
Sbjct: 802 QVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLC 861
Query: 373 QALDLLPNDQQILKE 387
Q L P+ +
Sbjct: 862 QDHGLTPDQVVAIAS 876
Score = 40.0 bits (93), Expect = 0.001
Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Query: 313 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 372
A+ + Q + +R + + + P+ V A+ + ++ ++ L
Sbjct: 904 QVVAIASNGGKQA-LETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLC 962
Query: 373 QALDLLPNDQQIL 385
Q L PN +
Sbjct: 963 QDHGLTPNQVVAI 975
Score = 35.8 bits (82), Expect = 0.029
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 3/105 (2%)
Query: 278 NRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLC 337
+ A K+A+ ++ Q A+ + + + + +R + +
Sbjct: 904 QVVAIASNGGKQALETVQ--RLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVL 961
Query: 338 DDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ 382
+ PN V A+ G Q + Q L + AL L ND
Sbjct: 962 CQDHGLTPNQVVAIASNGGKQALESIVAQ-LSRPDPALAALTNDH 1005
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 59.1 bits (144), Expect = 9e-10
Identities = 22/148 (14%), Positives = 46/148 (31%), Gaps = 18/148 (12%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHFR---SYYTAAL--- 317
+ ++ A+R + R S Q + + T A+
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 318 -------LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD 370
N+ V + + AI L ++P+ + A V+ + E +Q
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123
Query: 371 YEQALDLLPNDQQILKEIAFVRKQMRHH 398
Y AL P+ + ++ + K +
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRL 151
Score = 57.9 bits (141), Expect = 2e-09
Identities = 21/146 (14%), Positives = 51/146 (34%), Gaps = 20/146 (13%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSY------ 312
N Y++ + A Y++A+ ++ + N + + ++ Y
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIE-LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300
Query: 313 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 369
+ +L N+A ++ + + A+ L L + P A ++ L
Sbjct: 301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360
Query: 370 DYEQALDLLPNDQQILKEIAFVRKQM 395
Y++A+ + P + K+M
Sbjct: 361 HYKEAIRISPTFADAYSNMGNTLKEM 386
Score = 57.6 bits (140), Expect = 3e-09
Identities = 16/132 (12%), Positives = 40/132 (30%), Gaps = 18/132 (13%)
Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHF------------- 309
+ +F+ R+ + A++ + N ++
Sbjct: 37 LLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL 96
Query: 310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 369
+ + +N+AA + + A+ L P+ G ++ E+
Sbjct: 97 KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKA 156
Query: 370 DYEQALDLLPND 381
Y +A++ PN
Sbjct: 157 CYLKAIETQPNF 168
Score = 56.0 bits (136), Expect = 7e-09
Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 20/146 (13%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSY------ 312
N GN + A Y +A+ + N + +Q +Y
Sbjct: 208 NLGNVLKEARIFDRAVAAYLRALS-LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266
Query: 313 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 369
+ A N+A + + A + + L + P + +L + N E+ ++
Sbjct: 267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR 326
Query: 370 DYEQALDLLPNDQQILKEIAFVRKQM 395
Y +AL++ P +A V +Q
Sbjct: 327 LYRKALEVFPEFAAAHSNLASVLQQQ 352
Score = 55.6 bits (135), Expect = 1e-08
Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 20/132 (15%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSYYTA--- 315
N GN Y + ++ +A Y+ A+R +K + N + + ++Y +A
Sbjct: 72 NLGNVYKERGQLQEAIEHYRHALR-LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY 130
Query: 316 ------ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 369
++ + + A + +PN A G + +
Sbjct: 131 NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIH 190
Query: 370 DYEQALDLLPND 381
+E+A+ L PN
Sbjct: 191 HFEKAVTLDPNF 202
Score = 55.6 bits (135), Expect = 1e-08
Identities = 24/149 (16%), Positives = 43/149 (28%), Gaps = 20/149 (13%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSY------ 312
N M A + Y A++ + Y
Sbjct: 106 NLAAALVAAGDMEGAVQAYVSALQ-YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164
Query: 313 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 369
+ A N+ V AI+ + + ++PN + A G F++ +
Sbjct: 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVA 224
Query: 370 DYEQALDLLPNDQQILKEIAFVRKQMRHH 398
Y +AL L PN + +A V +
Sbjct: 225 AYLRALSLSPNHAVVHGNLACVYYEQGLI 253
Score = 54.1 bits (131), Expect = 3e-08
Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 20/132 (15%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSY------ 312
+ GN L R+ +A+ Y KA+ + W N Q +
Sbjct: 140 DLGNLLKALGRLEEAKACYLKAIE-TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL 198
Query: 313 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 369
+ A +N+ V + + + RA+ L + PN+ + +
Sbjct: 199 DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID 258
Query: 370 DYEQALDLLPND 381
Y +A++L P+
Sbjct: 259 TYRRAIELQPHF 270
Score = 54.1 bits (131), Expect = 3e-08
Identities = 11/79 (13%), Positives = 25/79 (31%)
Query: 317 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD 376
+ +A + + ++ A C + EP+N L ++ A+
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 377 LLPNDQQILKEIAFVRKQM 395
P + + V K+
Sbjct: 62 QNPLLAEAYSNLGNVYKER 80
Score = 53.3 bits (129), Expect = 6e-08
Identities = 22/132 (16%), Positives = 41/132 (31%), Gaps = 20/132 (15%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSY------ 312
N G + + A ++KAV + + N + + F +Y
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKAVT-LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232
Query: 313 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 369
+ N+A V + AI+ + ++P+ A A + +
Sbjct: 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAED 292
Query: 370 DYEQALDLLPND 381
Y AL L P
Sbjct: 293 CYNTALRLCPTH 304
Score = 38.3 bits (90), Expect = 0.004
Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 20/114 (17%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSY------ 312
N N + + +A+ Y A+R + N + K +Q + R Y
Sbjct: 276 NLANALKEKGSVAEAEDCYNTALR-LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334
Query: 313 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNN 363
+ AA N+A+V + + A+ + + + P A G M +
Sbjct: 335 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 57.7 bits (140), Expect = 1e-09
Identities = 17/136 (12%), Positives = 41/136 (30%), Gaps = 17/136 (12%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHFRSYYTAALLNMAAV 323
G Y+ A + K + YI + ++++ Q A
Sbjct: 147 ELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLA-------- 198
Query: 324 QLKFKAYKRAINLC-DDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ 382
Y++ I +C + ++A + + ++ L L P ++
Sbjct: 199 ---KPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNK 255
Query: 383 QILKEIAFVRKQMRHH 398
+ + + + HH
Sbjct: 256 KAIDGLKMKLEHHHHH 271
Score = 55.0 bits (133), Expect = 1e-08
Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 13/113 (11%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
Y++L KY A + I+ Y + +A + +K
Sbjct: 42 RRAVCYYELA-------KYDLAQKDIETYFSKVNA------TKAKSADFEYYGKILMKKG 88
Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
AI + + + + G + NF +Q E+ + D
Sbjct: 89 QDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD 141
Score = 50.0 bits (120), Expect = 4e-07
Identities = 16/122 (13%), Positives = 35/122 (28%), Gaps = 19/122 (15%)
Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
G+ ++ A + +K +R + +
Sbjct: 112 GQIGSYFYNKGNFPLAIQYMEKQIR----------------PTTTDPKVFYELGQAYYYN 155
Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNN---FEQGLQDYEQALDLLPNDQQI 384
K Y +A + +L ++PN R RA + + YE+ +++
Sbjct: 156 KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK 215
Query: 385 LK 386
K
Sbjct: 216 YK 217
Score = 49.2 bits (118), Expect = 7e-07
Identities = 15/130 (11%), Positives = 29/130 (22%), Gaps = 19/130 (14%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
+ FK N +A + K + Y A +
Sbjct: 8 RYADFLFKNNNYAEAIEVFNKLE-----------AKKYNSPYIYN-----RRAVCYYELA 51
Query: 329 AYKRAINLCDD---ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL 385
Y A + + G+ + +Q Y+ A+D +
Sbjct: 52 KYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMY 111
Query: 386 KEIAFVRKQM 395
+I
Sbjct: 112 GQIGSYFYNK 121
Score = 43.0 bits (102), Expect = 8e-05
Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 3/69 (4%)
Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD---YE 372
A K Y AI + + + + N+ RR + ++ +D Y
Sbjct: 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64
Query: 373 QALDLLPND 381
++
Sbjct: 65 SKVNATKAK 73
Score = 32.6 bits (75), Expect = 0.17
Identities = 8/49 (16%), Positives = 16/49 (32%)
Query: 347 NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 395
N FR NN+ + ++ + + N I A ++
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYEL 50
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 55.2 bits (132), Expect = 2e-08
Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 16/130 (12%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
N N + + +A R Y+KA+ + AA N+A+V +
Sbjct: 14 NLANIKREQGNIEEAVRLYRKALEV----------------FPEFAAAHSNLASVLQQQG 57
Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 388
+ A+ + + + P A G M + + LQ Y +A+ + P +
Sbjct: 58 KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNL 117
Query: 389 AFVRKQMRHH 398
A + K +
Sbjct: 118 ASIHKDSGNI 127
Score = 52.9 bits (126), Expect = 1e-07
Identities = 19/127 (14%), Positives = 39/127 (30%), Gaps = 16/127 (12%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
N + + ++ +A YK+A+R + A NM + +
Sbjct: 48 NLASVLQQQGKLQEALMHYKEAIR----------------ISPTFADAYSNMGNTLKEMQ 91
Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 388
+ A+ + + P A N + + Y AL L P+ +
Sbjct: 92 DVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNL 151
Query: 389 AFVRKQM 395
A + +
Sbjct: 152 AHCLQIV 158
Score = 47.1 bits (111), Expect = 8e-06
Identities = 14/86 (16%), Positives = 32/86 (37%)
Query: 313 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 372
+ +L N+A ++ + + A+ L L + P A ++ L Y+
Sbjct: 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67
Query: 373 QALDLLPNDQQILKEIAFVRKQMRHH 398
+A+ + P + K+M+
Sbjct: 68 EAIRISPTFADAYSNMGNTLKEMQDV 93
Score = 33.6 bits (76), Expect = 0.12
Identities = 11/54 (20%), Positives = 22/54 (40%)
Query: 345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 398
P + +L + N E+ ++ Y +AL++ P +A V +Q
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 59
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 52.1 bits (126), Expect = 7e-08
Identities = 23/149 (15%), Positives = 47/149 (31%), Gaps = 20/149 (13%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHFR----SY------ 312
+GN Y +A+ ++KA+R +Y + + +
Sbjct: 96 GAGNVYVVKEMYKEAKDMFEKALR-AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL 154
Query: 313 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 369
T A A++ + +P + A + G N E+ L+
Sbjct: 155 NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALE 214
Query: 370 DYEQALDLLPNDQQILKEIAFVRKQMRHH 398
++A+D+ P+ L + HH
Sbjct: 215 MLDKAIDIQPDHMLALHAKKLLGHHHHHH 243
Score = 51.7 bits (125), Expect = 9e-08
Identities = 18/132 (13%), Positives = 42/132 (31%), Gaps = 20/132 (15%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHFR----SY------ 312
N N +N + A Y KA+ + +Y ++ ++ +
Sbjct: 62 NFANLLSSVNELERALAFYDKALE-LDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA 120
Query: 313 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 369
+ V +K + K A+ + + N+ +A F+ G + ++ L
Sbjct: 121 GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180
Query: 370 DYEQALDLLPND 381
+ + P
Sbjct: 181 QFAAVTEQDPGH 192
Score = 49.8 bits (120), Expect = 4e-07
Identities = 22/151 (14%), Positives = 41/151 (27%), Gaps = 23/151 (15%)
Query: 249 KSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSK 303
P + M + A + KA+ I + N +
Sbjct: 13 GLVPRGSHMASMTGG-----QQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLL 67
Query: 304 TQQKHF----RSY---------YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA 350
+ Y A V + + YK A ++ + L N
Sbjct: 68 SSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDL 127
Query: 351 LFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
+ G V + + L ++A++L ND
Sbjct: 128 FYMLGTVLVKLEQPKLALPYLQRAVELNEND 158
Score = 35.2 bits (82), Expect = 0.022
Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
+ + L M RG ++E+ + + +A++ D
Sbjct: 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGSEF---GDYEKAAEAFTKAIEENKED 56
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 50.9 bits (122), Expect = 1e-07
Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 19/116 (16%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
N G +K A + ++ Q H R + N+ + K
Sbjct: 11 NEGVLAADKK-------DWKGA---LDAFS----AVQDPHSRICF-----NIGCMYTILK 51
Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 384
A + + + A F+RG ++ ++D ++AL L +Q I
Sbjct: 52 NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI 107
Score = 50.5 bits (121), Expect = 2e-07
Identities = 18/144 (12%), Positives = 43/144 (29%), Gaps = 34/144 (23%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
N G Y L M +A++ + +++ + A + + +
Sbjct: 42 NIGCMYTILKNMTEAEKAFTRSIN----------------RDKHLAVAYFQRGMLYYQTE 85
Query: 329 AYKRAINLCDD-ILLMEPNNV---------------KALFRRGRAQVSMNNFEQGLQDYE 372
Y AI + ++ + N + + L+ +++ +
Sbjct: 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145
Query: 373 QALDLLPNDQQ--ILKEIAFVRKQ 394
A + + I K + V KQ
Sbjct: 146 LATSMKSEPRHSKIDKAMECVWKQ 169
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 51.5 bits (124), Expect = 1e-07
Identities = 15/113 (13%), Positives = 30/113 (26%), Gaps = 14/113 (12%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
N G ++ R +A ++ +A Q + N+ V L+ K
Sbjct: 110 NYGGFLYEQKRYEEAYQRLLEAS--------------QDTLYPERSRVFENLGLVSLQMK 155
Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
+A + L + N + Q Y+ +
Sbjct: 156 KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208
Score = 49.6 bits (119), Expect = 5e-07
Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 22/151 (14%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYN-----QSQSKTQQ--KHFR----- 310
G Y + A+ +KA+ I Q++ + + + +R
Sbjct: 42 QLGLGYLQRGNTEQAKVPLRKALE-IDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS 100
Query: 311 -SYYTAALLNMAAVQLKFKAYKRAINLCDDIL--LMEPNNVKALFRRGRAQVSMNNFEQG 367
S L N + K Y+ A + + P + G + M Q
Sbjct: 101 DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160
Query: 368 LQDYEQALDLLPNDQQILKEIAFVRKQMRHH 398
+ +E++L L N + E+A + + R +
Sbjct: 161 KEYFEKSLRLNRNQPSVALEMADLLYKEREY 191
Score = 36.9 bits (86), Expect = 0.008
Identities = 12/113 (10%), Positives = 35/113 (30%), Gaps = 10/113 (8%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
S + + + + + +K K + + +Y + L+
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMGDQNPLK-----TDKGRDEARDAYI-----QLGLGYLQRG 51
Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
++A L ++P++ A + + ++Y +AL +
Sbjct: 52 NTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN 104
Score = 27.6 bits (62), Expect = 7.7
Identities = 14/108 (12%), Positives = 39/108 (36%), Gaps = 21/108 (19%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF---RSYYT----- 314
N G ++ + A+ ++K++R + + +++ + R YY
Sbjct: 146 NLGLVSLQMKKPAQAKEYFEKSLR-LNRNQPSVALEMADLLYKEREYVPARQYYDLFAQG 204
Query: 315 -----AALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA-LFRRGR 356
+LL + F+ A + + + P +++ F+ +
Sbjct: 205 GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQAEK 252
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 49.1 bits (117), Expect = 2e-07
Identities = 17/137 (12%), Positives = 36/137 (26%), Gaps = 21/137 (15%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
+ ++ DA ++ Y + L + A +
Sbjct: 26 SLAFNQYQSGXYEDAHXVFQALCVL----------------DHYDSRFFLGLGACRQAMG 69
Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN--DQQILK 386
Y AI+ +M+ + F + + A +L+ N + L
Sbjct: 70 QYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELS 129
Query: 387 EIAFVRKQMRHHLNLEK 403
M + L+K
Sbjct: 130 TRV---SSMLEAIKLKK 143
Score = 47.2 bits (112), Expect = 9e-07
Identities = 9/74 (12%), Positives = 28/74 (37%)
Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 375
L ++A Q + Y+ A + + +++ + + G + +M ++ + Y
Sbjct: 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA 82
Query: 376 DLLPNDQQILKEIA 389
+ + + A
Sbjct: 83 VMDIXEPRFPFHAA 96
Score = 35.7 bits (82), Expect = 0.010
Identities = 7/60 (11%), Positives = 20/60 (33%)
Query: 339 DILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 398
+ + + ++ L+ Q +E ++ L D + + R+ M +
Sbjct: 12 MLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQY 71
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 48.2 bits (115), Expect = 2e-07
Identities = 12/99 (12%), Positives = 34/99 (34%), Gaps = 6/99 (6%)
Query: 286 KYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP 345
+A + +Y ++ L + + Y++A + + + P
Sbjct: 5 LEAQA---VPYYEKAI---ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP 58
Query: 346 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 384
N+ ++ +EQG++ + + +D+ I
Sbjct: 59 NHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETI 97
Score = 39.3 bits (92), Expect = 3e-04
Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 4/62 (6%)
Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
Y++AI L + + G ++ + + + PN Q +
Sbjct: 11 PYYEKAIASG----LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVF 66
Query: 388 IA 389
A
Sbjct: 67 YA 68
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 51.9 bits (124), Expect = 2e-07
Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 13/145 (8%)
Query: 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAV 323
+ T N Y+ + R+ D Q K + ++ +R
Sbjct: 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS--------SPYRIESPELDCEEGWT 145
Query: 324 QLKF--KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNF---EQGLQDYEQALDLL 378
+LK +RA + L +P N + A ++N+ + + QA+ L
Sbjct: 146 RLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205
Query: 379 PNDQQILKEIAFVRKQMRHHLNLEK 403
P++Q + +A +MR E
Sbjct: 206 PDNQYLKVLLALKLHKMREEGEEEG 230
Score = 45.7 bits (108), Expect = 2e-05
Identities = 17/142 (11%), Positives = 47/142 (33%), Gaps = 13/142 (9%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
+ +A ++A+R + AL + ++ + +
Sbjct: 180 IASYRLDNWPPSQNAIDPLRQAIRL-----------NPDNQYLKVLLALK-LHKMREEGE 227
Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 388
L ++ L P L + + ++ ++ ++AL+ +PN+ + +I
Sbjct: 228 EEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287
Query: 389 AFV-RKQMRHHLNLEKMTYARM 409
R ++ +NL +
Sbjct: 288 GCCYRAKVFQVMNLRENGMYGK 309
Score = 45.3 bits (107), Expect = 2e-05
Identities = 11/131 (8%), Positives = 34/131 (25%), Gaps = 9/131 (6%)
Query: 257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR----YIKWYNQ--SQSKTQQKHFR 310
L + V ++++ Y + + A KKA+ + Q + +
Sbjct: 240 LEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVM 299
Query: 311 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD 370
+ + + + A+ N + + +E+
Sbjct: 300 NLRENGMYGKRKLL---ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYY 356
Query: 371 YEQALDLLPND 381
+++
Sbjct: 357 FQKEFSKELTP 367
Score = 43.0 bits (101), Expect = 1e-04
Identities = 15/125 (12%), Positives = 35/125 (28%), Gaps = 12/125 (9%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS------KTQQKHFRSYYTAALLNMAA 322
+ + ++ +A+ ++K Q Q + A +
Sbjct: 339 ILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG 398
Query: 323 VQLK------FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD 376
V++ K + + L + +AL Q +Q +D E+ L+
Sbjct: 399 VKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458
Query: 377 LLPND 381
Sbjct: 459 SGSLI 463
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 50.3 bits (121), Expect = 2e-07
Identities = 20/157 (12%), Positives = 36/157 (22%), Gaps = 33/157 (21%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYN-----QSQSKTQQ--KHFR----- 310
EY + A + A++ W Q + + FR
Sbjct: 13 QLAMEYMRGQDYRQATASIEDALK-SDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI 71
Query: 311 -SYYTAALLNMAAV---QLK-----FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSM 361
N +L + +A+ P A +G
Sbjct: 72 KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTY-----PTPYIANLNKGICSAKQ 126
Query: 362 NNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 398
F +++L P KE+A +
Sbjct: 127 GQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163
Score = 49.2 bits (118), Expect = 6e-07
Identities = 18/135 (13%), Positives = 30/135 (22%), Gaps = 23/135 (17%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYN----------------QSQSKTQQ 306
Y L AQ +++A+ IK N K
Sbjct: 47 VRAEIYQYLKVNDKAQESFRQALS-IKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA 105
Query: 307 KHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQ 366
A LN K + A L +P A R ++
Sbjct: 106 DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165
Query: 367 GLQDYEQALDLLPND 381
+++ +
Sbjct: 166 ADYYFKKYQSRVEVL 180
Score = 36.9 bits (86), Expect = 0.006
Identities = 13/66 (19%), Positives = 28/66 (42%)
Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 375
+A ++ + Y++A +D L +P N A R + ++ + + QAL
Sbjct: 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQAL 69
Query: 376 DLLPND 381
+ P+
Sbjct: 70 SIKPDS 75
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 50.9 bits (121), Expect = 3e-07
Identities = 15/122 (12%), Positives = 42/122 (34%), Gaps = 14/122 (11%)
Query: 274 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA 333
KL+R+ A+++ KK + + A +++A + + A
Sbjct: 140 LLKLDRLDLARKELKKMQDQ-----------DEDATLTQLATAWVSLA---AGGEKLQDA 185
Query: 334 INLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK 393
+ ++ + L + ++ +E ++ALD + L + + +
Sbjct: 186 YYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQ 245
Query: 394 QM 395
+
Sbjct: 246 HL 247
Score = 34.7 bits (79), Expect = 0.043
Identities = 16/128 (12%), Positives = 29/128 (22%), Gaps = 19/128 (14%)
Query: 271 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY 330
+ YF A R + Q LL + + L K
Sbjct: 108 ASIYFYDQNPDAALRTLHQGDSLECMAMTVQ--------------ILLKLDRLDLARKEL 153
Query: 331 KRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAF 390
K+ + +D L + G + +++ D +L A
Sbjct: 154 KKMQDQDEDATLTQLATAWVSLAAGG-----EKLQDAYYIFQEMADKCSPTLLLLNGQAA 208
Query: 391 VRKQMRHH 398
Sbjct: 209 CHMAQGRW 216
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 49.0 bits (118), Expect = 4e-07
Identities = 19/132 (14%), Positives = 40/132 (30%), Gaps = 20/132 (15%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSY------ 312
+ G + K R A ++ + + +
Sbjct: 13 DKGISHAKAGRYSQAVMLLEQVYD-ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD 71
Query: 313 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 369
+ ++ + Y A+ L + P N FR G A ++ F++ +
Sbjct: 72 APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAID 131
Query: 370 DYEQALDLLPND 381
++ AL L PN+
Sbjct: 132 SFKIALGLRPNE 143
Score = 46.7 bits (112), Expect = 2e-06
Identities = 15/132 (11%), Positives = 34/132 (25%), Gaps = 20/132 (15%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSY------ 312
+ G Y K + ++++ + Q + +
Sbjct: 47 HLGIAYVKTGAVDRGTELLERSLA-DAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA 105
Query: 313 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 369
+ + AI+ L + PN K + M E+ L
Sbjct: 106 NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165
Query: 370 DYEQALDLLPND 381
+++A +L
Sbjct: 166 HFKKANELDEGA 177
Score = 39.0 bits (92), Expect = 0.001
Identities = 12/70 (17%), Positives = 26/70 (37%)
Query: 312 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDY 371
+ K Y +A+ L + + + +V G A V ++G +
Sbjct: 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELL 65
Query: 372 EQALDLLPND 381
E++L P++
Sbjct: 66 ERSLADAPDN 75
Score = 29.3 bits (67), Expect = 1.6
Identities = 9/102 (8%), Positives = 22/102 (21%), Gaps = 20/102 (19%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSY------ 312
G Y ++ + A K + + F S+
Sbjct: 81 VLGLTYVQVQKYDLAVPLLIKVAE-ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL 139
Query: 313 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKAL 351
+A + ++ A+ ++ L
Sbjct: 140 RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVEL 181
Score = 27.0 bits (61), Expect = 8.5
Identities = 6/37 (16%), Positives = 10/37 (27%)
Query: 345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
+G + + Q + EQ D D
Sbjct: 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD 41
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 50.4 bits (121), Expect = 5e-07
Identities = 19/128 (14%), Positives = 45/128 (35%), Gaps = 7/128 (5%)
Query: 261 EDVIRTIKNSGNEYFKL-NRMHDAQRKYKKAVRYIKWYNQSQSKTQQK------HFRSYY 313
E I++ + + KL + + ++ +A ++ Y+ S T K
Sbjct: 4 ERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRD 63
Query: 314 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ 373
+L+ A+ L + + +P +++A G Q + +
Sbjct: 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRR 123
Query: 374 ALDLLPND 381
L+L P++
Sbjct: 124 CLELKPDN 131
Score = 46.2 bits (110), Expect = 9e-06
Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 16/118 (13%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
G + + +A ++ AV + KH ++ + Q + +
Sbjct: 69 EEGLRRLQEGDLPNAVLLFEAAV-----------QQDPKHMEAWQ-----YLGTTQAENE 112
Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 386
AI+ L ++P+N AL + + + Q + L P ++
Sbjct: 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT 170
Score = 41.9 bits (99), Expect = 2e-04
Identities = 19/141 (13%), Positives = 39/141 (27%), Gaps = 20/141 (14%)
Query: 242 PPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQ 301
P + E + K + + + + AVR
Sbjct: 163 PAYAHLVTPAEEGAGGAGLGPS----KRILGSLLSDSLFLEVKELFLAAVRL-------- 210
Query: 302 SKTQQKHFRSYYTA-ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVS 360
+ + + Y +A++ L + PN+ + G +
Sbjct: 211 -------DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN 263
Query: 361 MNNFEQGLQDYEQALDLLPND 381
N E+ + Y +AL+L P
Sbjct: 264 GNQSEEAVAAYRRALELQPGY 284
Score = 38.5 bits (90), Expect = 0.003
Identities = 14/120 (11%), Positives = 36/120 (30%), Gaps = 30/120 (25%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF- 327
G + A + A+ R + A
Sbjct: 222 GLGVLFNLSGEYDKAVDCFTAALS----------------VRPNDYLLWNKLGATLANGN 265
Query: 328 ------KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
AY+RA+ L +P +++ + G + +++ + ++ + +AL++
Sbjct: 266 QSEEAVAAYRRALEL-------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318
Score = 34.6 bits (80), Expect = 0.049
Identities = 14/124 (11%), Positives = 32/124 (25%), Gaps = 27/124 (21%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
G N+ +A Y++A+ + Y + N+ +
Sbjct: 256 KLGATLANGNQSEEAVAAYRRALEL----------------QPGYIRSRYNLGISCINLG 299
Query: 329 AYKRAINLCDDILLMEPNNVKALFRR-----------GRAQVSMNNFEQGLQDYEQALDL 377
A++ A+ + L M+ + A + + + L
Sbjct: 300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359
Query: 378 LPND 381
L
Sbjct: 360 LLTM 363
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 47.1 bits (113), Expect = 5e-07
Identities = 15/119 (12%), Positives = 34/119 (28%), Gaps = 26/119 (21%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHFRSYYTAALLNMAA 322
G + ++ ++KA++ + W + ++ + Y A+
Sbjct: 11 LEGVLQYDAGNYTESIDLFEKAIQ-LDPEESKYWLMKGKALYNLER----YEEAV----- 60
Query: 323 VQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
Y IN+ +D N + A + E + E L +
Sbjct: 61 -----DCYNYVINVIED-----EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
Score = 43.6 bits (104), Expect = 8e-06
Identities = 10/67 (14%), Positives = 30/67 (44%)
Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 375
+Q Y +I+L + + ++P K +G+A ++ +E+ + Y +
Sbjct: 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVI 67
Query: 376 DLLPNDQ 382
+++ ++
Sbjct: 68 NVIEDEY 74
Score = 36.7 bits (86), Expect = 0.002
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 343 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
M N + + G Q N+ + + +E+A+ L P +
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 49.6 bits (119), Expect = 5e-07
Identities = 12/134 (8%), Positives = 38/134 (28%), Gaps = 22/134 (16%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAV------------RYIKWYNQSQSKTQQKHFRSY---- 312
N G + R AQ Y+ + + ++ + +
Sbjct: 116 NRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 175
Query: 313 -----YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQG 367
+ + + + +R D + + + F G+ +S+ + +
Sbjct: 176 KEQWGWNIVEFYLGNISEQTL-MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSA 234
Query: 368 LQDYEQALDLLPND 381
++ A+ ++
Sbjct: 235 TALFKLAVANNVHN 248
Score = 48.1 bits (115), Expect = 2e-06
Identities = 21/119 (17%), Positives = 34/119 (28%), Gaps = 28/119 (23%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHFRSYYTAALLNMAA 322
G Y L A+ + +A+ I+ + TQ + + AA
Sbjct: 48 ERGVLYDSLGLRALARNDFSQALA-IRPDMPEVFNYLGIYLTQAGN----FDAAY----- 97
Query: 323 VQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
+A+ + L +P A RG A + D PND
Sbjct: 98 -----EAFDSVLEL-------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144
Score = 40.0 bits (94), Expect = 0.001
Identities = 12/99 (12%), Positives = 25/99 (25%), Gaps = 5/99 (5%)
Query: 283 AQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 342
+ + + Q + L + A N L
Sbjct: 17 PTLQQEVI---LARMEQILASRALT--DDERAQLLYERGVLYDSLGLRALARNDFSQALA 71
Query: 343 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
+ P+ + G NF+ + ++ L+L P
Sbjct: 72 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY 110
Score = 33.4 bits (77), Expect = 0.11
Identities = 10/100 (10%), Positives = 24/100 (24%), Gaps = 10/100 (10%)
Query: 274 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA 333
F L + + Q ++ + S + + + L A
Sbjct: 185 EFYLGNISE-QTLMERL---KADATDNTS------LAEHLSETNFYLGKYYLSLGDLDSA 234
Query: 334 INLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ 373
L + +N + + L + +Q
Sbjct: 235 TALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 50.1 bits (120), Expect = 7e-07
Identities = 16/113 (14%), Positives = 35/113 (30%), Gaps = 6/113 (5%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-QSKTQQKHFRSYYTAALLNMAAVQLKF 327
N RM + + Y ++ + +
Sbjct: 172 NKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQT-----GLGVLFHLS 226
Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 380
+ RAI+ + L + P + R G + + E+ ++ Y +AL++ P
Sbjct: 227 GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279
Score = 47.7 bits (114), Expect = 3e-06
Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 9/110 (8%)
Query: 272 NEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYK 331
+ N+ Q + + ++ K + + +LK
Sbjct: 32 RNWISENQEAQNQVTVSASEKGY----YFHTENPFKDWPGAF-----EEGLKRLKEGDLP 82
Query: 332 RAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
I + +L +P + +A G Q N + + ++ L+L PN+
Sbjct: 83 VTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNN 132
Score = 45.1 bits (107), Expect = 3e-05
Identities = 14/116 (12%), Positives = 37/116 (31%), Gaps = 16/116 (13%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
G + K + + A+ ++ + Q + +
Sbjct: 70 EEGLKRLKEGDLPVTILFMEAAI-----------LQDPGDAEAWQ-----FLGITQAENE 113
Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 384
+ AI L ++PNN+KAL + + ++ + + + + P + +
Sbjct: 114 NEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYL 169
Score = 37.3 bits (87), Expect = 0.006
Identities = 12/101 (11%), Positives = 31/101 (30%), Gaps = 5/101 (4%)
Query: 283 AQRKYKKAVRYIKWYNQSQSKTQQ--KHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 340
++++A ++ + K Q + + A Q+ A ++ +
Sbjct: 1 GAMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTEN 60
Query: 341 LLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
+ F G ++ + + E A+ P D
Sbjct: 61 ---PFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD 98
Score = 29.6 bits (67), Expect = 1.7
Identities = 13/107 (12%), Positives = 29/107 (27%), Gaps = 18/107 (16%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
G +R +A Y +A+ + + + N+ +
Sbjct: 252 RLGATLANGDRSEEAVEAYTRALEI----------------QPGFIRSRYNLGISCINLG 295
Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVS--MNNFEQGLQDYEQ 373
AY+ A++ L ++ + A L +Q
Sbjct: 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ 342
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 49.2 bits (117), Expect = 2e-06
Identities = 21/179 (11%), Positives = 53/179 (29%), Gaps = 24/179 (13%)
Query: 245 PEDWKSNPETVQ-LNQMEDVIRTIKNSGNEYFKLN-------RMHDAQRKYKKAVRYIKW 296
E L +++ ++ + + YF+ + + D Q + +K ++
Sbjct: 34 SMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKT---LQQ 90
Query: 297 YNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY-KRAINLCDDILLMEPNNVKALFRRG 355
+ + Q ++ Y A L + +EP V+A + G
Sbjct: 91 MEEVL-GSAQVEAQALM-----LKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLG 144
Query: 356 RAQVSMNNFEQGLQDYEQALDLLPNDQ------QILKEIAFVRKQMRHHLNLEKMTYAR 408
+ + AL N +L+++ ++ + A+
Sbjct: 145 EVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK 203
Score = 45.0 bits (106), Expect = 3e-05
Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 16/135 (11%)
Query: 251 NPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQ 305
V L + V+R ++ + + D+ R+ K AV+ WY +
Sbjct: 167 CKNKVSLQNLSMVLRQLQT-DSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNA--- 222
Query: 306 QKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFE 365
Y + N + A + + +N R ++
Sbjct: 223 -------YLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYG 275
Query: 366 QGLQDYEQALDLLPN 380
+ L+ + QA L P
Sbjct: 276 EALEGFSQAAALDPA 290
Score = 37.3 bits (86), Expect = 0.009
Identities = 13/103 (12%), Positives = 28/103 (27%), Gaps = 13/103 (12%)
Query: 272 NEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYK 331
N A Y +A + + S LN A + ++Y
Sbjct: 229 NTGQNPKISQQALSAYAQAEKVDRKA-------------SSNPDLHLNRATLHKYEESYG 275
Query: 332 RAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQA 374
A+ ++P + R + ++ L+ +
Sbjct: 276 EALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 48.4 bits (116), Expect = 2e-06
Identities = 15/140 (10%), Positives = 41/140 (29%), Gaps = 20/140 (14%)
Query: 242 PPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQ 301
P + + N + ++ +++ + N + + A+
Sbjct: 120 PQYEQLGSVNLQA----DVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM-------- 167
Query: 302 SKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSM 361
++ + Y A + + P++ + + G +
Sbjct: 168 --------NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANG 219
Query: 362 NNFEQGLQDYEQALDLLPND 381
N ++ L Y +ALD+ P
Sbjct: 220 NRPQEALDAYNRALDINPGY 239
Score = 47.3 bits (113), Expect = 5e-06
Identities = 12/69 (17%), Positives = 17/69 (24%)
Query: 313 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 372
Y + LK A + + P +A G Q +
Sbjct: 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALN 79
Query: 373 QALDLLPND 381
A L P D
Sbjct: 80 HARMLDPKD 88
Score = 43.8 bits (104), Expect = 6e-05
Identities = 13/116 (11%), Positives = 36/116 (31%), Gaps = 16/116 (13%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
G KL + +A ++ + + ++ ++ Q + +
Sbjct: 26 EEGLSMLKLANLAEAALAFEAVCQA-----------APEREEAWR-----SLGLTQAENE 69
Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 384
AI + +++P ++ + + +N L L P +Q+
Sbjct: 70 KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 125
Score = 36.1 bits (84), Expect = 0.017
Identities = 19/144 (13%), Positives = 34/144 (23%), Gaps = 32/144 (22%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHFR----SY------ 312
+ G Y N A ++AV ++ W + + +Y
Sbjct: 177 SLGVLYNLSNNYDSAAANLRRAVE-LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235
Query: 313 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRR------------GRA 357
Y + NMA Y A + M+
Sbjct: 236 NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML 295
Query: 358 QVSMNNFEQGLQDYEQALDLLPND 381
MN + Y Q ++ +
Sbjct: 296 LNVMNRPDLVELTYAQNVEPFAKE 319
Score = 29.6 bits (67), Expect = 2.1
Identities = 6/54 (11%), Positives = 12/54 (22%), Gaps = 7/54 (12%)
Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
Y N + G + + + N + +E P
Sbjct: 8 TDYPFEAN-------NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPER 54
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 47.2 bits (112), Expect = 4e-06
Identities = 12/158 (7%), Positives = 44/158 (27%), Gaps = 37/158 (23%)
Query: 256 QLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRY---------------------- 293
+ + + +G L RM +A + +KA
Sbjct: 68 NNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME 127
Query: 294 -------IKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK-------FKAYKRAINLCDD 339
+ Y Q+ + + + + + + ++ + ++ ++ +
Sbjct: 128 PLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187
Query: 340 ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 377
+ P K + Q+ ++ + ++ +
Sbjct: 188 -MENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI 224
Score = 35.3 bits (81), Expect = 0.030
Identities = 17/137 (12%), Positives = 42/137 (30%), Gaps = 8/137 (5%)
Query: 272 NEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYK 331
+EY K ++ ++A Y Q + A + +
Sbjct: 37 SEYAKAAVAFKNAKQLEQAKDA---YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93
Query: 332 RAINLCDDIL-----LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 386
A+ + P+ R + + + + Y+QA + N++++ +
Sbjct: 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQ 153
Query: 387 EIAFVRKQMRHHLNLEK 403
+ K R + +K
Sbjct: 154 AAELIGKASRLLVRQQK 170
Score = 34.1 bits (78), Expect = 0.066
Identities = 24/124 (19%), Positives = 42/124 (33%), Gaps = 3/124 (2%)
Query: 283 AQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAA-LLNMAAVQLKF-KAYKRAINLCDDI 340
A +K +A +I + + K Y +AA AAV K K ++A +
Sbjct: 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQE 62
Query: 341 LLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLN 400
NN ++LF +A + LQ +A+ + + E
Sbjct: 63 AEAHANN-RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDR 121
Query: 401 LEKM 404
K+
Sbjct: 122 AGKL 125
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 44.6 bits (106), Expect = 4e-06
Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 2/92 (2%)
Query: 313 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 372
+ + + + A+ L +P A G+ + Q +E
Sbjct: 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWE 77
Query: 373 QALDLLPN--DQQILKEIAFVRKQMRHHLNLE 402
L + DQQ++KE+ +++ LE
Sbjct: 78 SGLAAAQSRGDQQVVKELQVFLRRLAREDALE 109
Score = 36.9 bits (86), Expect = 0.002
Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 7/52 (13%)
Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 380
+ + +N+ F G+ F+ L ALD P
Sbjct: 7 RLEAMLAQ-------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT 51
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 44.4 bits (105), Expect = 5e-06
Identities = 14/116 (12%), Positives = 34/116 (29%), Gaps = 16/116 (13%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
G KL + +A ++ + A ++ Q + +
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQ----------------KEPEREEAWRSLGLTQAENE 65
Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 384
AI + +++P ++ + + +N L L P +Q+
Sbjct: 66 KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 121
Score = 43.2 bits (102), Expect = 2e-05
Identities = 13/74 (17%), Positives = 20/74 (27%)
Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 375
+ LK A + + EP +A G Q + A
Sbjct: 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR 78
Query: 376 DLLPNDQQILKEIA 389
L P D + +A
Sbjct: 79 MLDPKDIAVHAALA 92
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 46.5 bits (111), Expect = 9e-06
Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 9/103 (8%)
Query: 281 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 340
H +++ A + Y ++ + + R + ++ + AI +
Sbjct: 273 HIFLGQFEDAAEH---YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH 329
Query: 341 LLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 377
L + +A + G A ++ E+ L+ EQ L L
Sbjct: 330 LAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372
Score = 41.9 bits (99), Expect = 3e-04
Identities = 8/105 (7%), Positives = 26/105 (24%), Gaps = 7/105 (6%)
Query: 277 LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL 336
N ++ + + S L + +
Sbjct: 14 ENVSSLGLGSGGGGTNS---HDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAF 70
Query: 337 CDDILLMEPNNVK----ALFRRGRAQVSMNNFEQGLQDYEQALDL 377
+ +++ + G A + ++ + +Q ++ L L
Sbjct: 71 FQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL 115
Score = 40.7 bits (96), Expect = 7e-04
Identities = 13/128 (10%), Positives = 30/128 (23%), Gaps = 18/128 (14%)
Query: 256 QLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTA 315
+ + + G + V + + + + +A
Sbjct: 40 GSDGGSSMCLELALEGERLCNAG-------DCRAGVAF---FQAAIQAGTEDL--RTLSA 87
Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLM------EPNNVKALFRRGRAQVSMNNFEQGLQ 369
+ Y +A+ L + K+ G M F++
Sbjct: 88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAI 147
Query: 370 DYEQALDL 377
E+ L L
Sbjct: 148 CCERHLTL 155
Score = 35.4 bits (82), Expect = 0.032
Identities = 15/118 (12%), Positives = 38/118 (32%), Gaps = 13/118 (11%)
Query: 277 LNRM---HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA 333
+ + ++ A+ + + + ++ R+ A N+ + ++ A
Sbjct: 226 CGNLGNTYYLLGDFQAAIEH---HQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA 282
Query: 334 INLCDDILLMEPNNVKALF-RRGRAQVSMN--NFEQGLQDYEQALDLLPNDQQILKEI 388
L + L R AQ + N L ++ A++ I +E+
Sbjct: 283 AEHYKRTLALA----VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336
Score = 33.8 bits (78), Expect = 0.10
Identities = 19/127 (14%), Positives = 40/127 (31%), Gaps = 9/127 (7%)
Query: 257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAA 316
L + +V + D + +AV + Y ++ + R A
Sbjct: 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF---YQENLKLMRDLGDRGAQGRA 225
Query: 317 LLNMAAVQLKFKAYKRAINLCDDILLM------EPNNVKALFRRGRAQVSMNNFEQGLQD 370
N+ ++ AI + L + +A G + + + FE +
Sbjct: 226 CGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285
Query: 371 YEQALDL 377
Y++ L L
Sbjct: 286 YKRTLAL 292
Score = 31.1 bits (71), Expect = 0.72
Identities = 8/93 (8%), Positives = 25/93 (26%), Gaps = 5/93 (5%)
Query: 310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 369
S + L + + ++ + L G + + G+
Sbjct: 11 ASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDG-GSSMCLELALEGERLCNAGDCRAGVA 69
Query: 370 DYEQALDLLPNDQQ----ILKEIAFVRKQMRHH 398
++ A+ D + I ++ + +
Sbjct: 70 FFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDY 102
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 46.5 bits (111), Expect = 9e-06
Identities = 21/127 (16%), Positives = 49/127 (38%), Gaps = 16/127 (12%)
Query: 281 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 340
+ +++ A Y Y ++ +Q R+ + ++ + Y++AI+
Sbjct: 237 YIFLGEFETASEY---YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293
Query: 341 LLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ 394
L + +A + G A ++ N +Q + E+ L +I +E+ +
Sbjct: 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL-------EISREVGDKSGE 346
Query: 395 MRHHLNL 401
+ LNL
Sbjct: 347 LTARLNL 353
Score = 41.1 bits (97), Expect = 5e-04
Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 18/124 (14%)
Query: 260 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLN 319
ME + G K + V + + + + +A
Sbjct: 5 MEASCLELALEGERLCKSG-------DCRAGVSF---FEAAVQVGTEDL--KTLSAIYSQ 52
Query: 320 MAAVQLKFKAYKRAINLCDDILLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQ 373
+ Y +A+ L + + KA G + NF++ + ++
Sbjct: 53 LGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 112
Query: 374 ALDL 377
LD+
Sbjct: 113 HLDI 116
Score = 36.1 bits (84), Expect = 0.017
Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 9/116 (7%)
Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
+ + + AV + Y ++ S R+ A N+
Sbjct: 144 FGCPGPQDVGEFPEEVRDALQAAVDF---YEENLSLVTALGDRAAQGRAFGNLGNTHYLL 200
Query: 328 KAYKRAINLCDDILLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 377
++ A+ + LL+ + +A G A + + FE + Y++ L L
Sbjct: 201 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 256
Score = 30.7 bits (70), Expect = 0.95
Identities = 8/65 (12%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 281 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF-KAYKRAINLCDD 339
+ A + +A+ + + +++ +S A LN++ +Q+ +Y ++ +
Sbjct: 317 YTALGNHDQAMHF---AEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSE 373
Query: 340 ILLME 344
++
Sbjct: 374 NTEID 378
Score = 29.2 bits (66), Expect = 2.8
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 350 ALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ 383
L G + G+ +E A+ + D +
Sbjct: 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK 44
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 43.5 bits (104), Expect = 1e-05
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 16/112 (14%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
N GN Y+K +A Y+KA+ + A N+ K
Sbjct: 6 NLGNAYYKQGDYDEAIEYYQKALE-LD---------------PRSAEAWYNLGNAYYKQG 49
Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 380
Y AI L ++P + +A + G A ++++ ++ Y++AL+L P
Sbjct: 50 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101
Score = 35.1 bits (82), Expect = 0.010
Identities = 12/54 (22%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
+ Y++A+ L +P + +A + G A ++++ ++ Y++AL+L P
Sbjct: 22 EYYQKALEL-------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 68
Score = 27.4 bits (62), Expect = 5.1
Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 20/98 (20%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYN-----QSQSKTQQ--KHFR----- 310
N GN Y+K +A Y+KA+ + WYN Q + ++++
Sbjct: 40 NLGNAYYKQGDYDEAIEYYQKALE-LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 98
Query: 311 -SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN 347
A N+ K Y AI L ++P +
Sbjct: 99 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 44.2 bits (105), Expect = 4e-05
Identities = 16/103 (15%), Positives = 41/103 (39%), Gaps = 9/103 (8%)
Query: 281 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 340
+ +++ A Y Y ++ +Q R+ + ++ + Y++AI+
Sbjct: 233 YIFLGEFETASEY---YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289
Query: 341 LLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 377
L + +A + G A ++ N +Q + E+ L++
Sbjct: 290 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332
Score = 38.8 bits (91), Expect = 0.002
Identities = 13/110 (11%), Positives = 31/110 (28%), Gaps = 14/110 (12%)
Query: 277 LNRM---HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA 333
L + V + + + + +A + Y +A
Sbjct: 8 LALEGERLCKSGDCRAGVSF---FEAAVQVGTEDL--KTLSAIYSQLGNAYFYLHDYAKA 62
Query: 334 INLCDDILLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 377
+ L + + KA G + NF++ + ++ LD+
Sbjct: 63 LEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI 112
Score = 35.3 bits (82), Expect = 0.030
Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 9/110 (8%)
Query: 274 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA 333
D + + AV Y ++ S R+ A N+ ++ A
Sbjct: 146 QDTGEFPEDVRNALQAAVDL---YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 202
Query: 334 INLCDDILLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 377
+ + LL+ + +A G A + + FE + Y++ L L
Sbjct: 203 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 252
Score = 34.9 bits (81), Expect = 0.043
Identities = 7/66 (10%), Positives = 21/66 (31%), Gaps = 4/66 (6%)
Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLME----PNNVKALFRRGRAQVSMNNFEQGLQDY 371
L K + ++ + + + + G A ++++ + L+ +
Sbjct: 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYH 66
Query: 372 EQALDL 377
L L
Sbjct: 67 HHDLTL 72
Score = 33.8 bits (78), Expect = 0.10
Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 13/118 (11%)
Query: 277 LNRM---HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA 333
+ H ++ AV + Q ++ ++ A N+ + ++ A
Sbjct: 186 FGNLGNTHYLLGNFRDAVIA---HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242
Query: 334 INLCDDILLMEPNNVKALF-RRGRAQVSMN--NFEQGLQDYEQALDLLPNDQQILKEI 388
LL+ + L R AQ + N LQDYE+A+D I +E+
Sbjct: 243 SEYYKKTLLLA----RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296
Score = 33.4 bits (77), Expect = 0.11
Identities = 23/147 (15%), Positives = 45/147 (30%), Gaps = 36/147 (24%)
Query: 281 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAV----------------- 323
+ +A I + +++ + + AL N+ V
Sbjct: 93 LKVLGNFDEA---IVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTG 149
Query: 324 ---QLKFKAYKRAINLCDDILLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQA 374
+ A + A++L ++ L + +A G + NF + +EQ
Sbjct: 150 EFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 209
Query: 375 LDLLPNDQQILKEIAFVRKQMRHHLNL 401
L I KE + R + NL
Sbjct: 210 L-------LIAKEFGDKAAERRAYSNL 229
Score = 31.4 bits (72), Expect = 0.44
Identities = 9/64 (14%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 274 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA 333
+ L + + Y+KA+ Y + + + Q+ R A ++ + +A
Sbjct: 266 CYSLGNTYTLLQDYEKAIDY---HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322
Query: 334 INLC 337
++
Sbjct: 323 MHFA 326
Score = 31.1 bits (71), Expect = 0.58
Identities = 17/130 (13%), Positives = 32/130 (24%), Gaps = 29/130 (22%)
Query: 274 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA 333
Y +L + Y KA+ Y ++ + + + A N+ + A
Sbjct: 46 YSQLGNAYFYLHDYAKALEY---HHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEA 102
Query: 334 INLCDDILLM--------------------------EPNNVKALFRRGRAQVSMNNFEQG 367
I C L + + N +
Sbjct: 103 IVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162
Query: 368 LQDYEQALDL 377
+ YE+ L L
Sbjct: 163 VDLYEENLSL 172
Score = 29.5 bits (67), Expect = 2.2
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 350 ALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ 383
L G + G+ +E A+ + D +
Sbjct: 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 43.3 bits (103), Expect = 5e-05
Identities = 14/117 (11%), Positives = 29/117 (24%), Gaps = 27/117 (23%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK-----WYNQSQSKTQQKHFRSYYTAALLNMAAV 323
G Y L A+ K+A+ ++ ++ AL
Sbjct: 123 QRGLVYALLGERDKAEASLKQALA-LEDTPEIRSALAELYLSMGR----LDEAL------ 171
Query: 324 QLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 380
Y +A+ P ++ R A + E+ + +
Sbjct: 172 ----AQYAKALEQ-------APKDLDLRVRYASALLLKGKAEEAARAAALEHHHHHH 217
Score = 42.9 bits (102), Expect = 6e-05
Identities = 17/125 (13%), Positives = 30/125 (24%), Gaps = 31/125 (24%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYN-------QSQSKTQQKHFRSYYTA 315
KL ++ A K V + + ++ + Y
Sbjct: 44 WLARTQLKLGLVNPALENGKTLVA-RTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQ 102
Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 375
AL K A + P +RG + ++ +QAL
Sbjct: 103 AL----------SVLKDAERV-------NPRYAPLHLQRGLVYALLGERDKAEASLKQAL 145
Query: 376 DLLPN 380
L
Sbjct: 146 ALEDT 150
Score = 39.1 bits (92), Expect = 0.001
Identities = 12/66 (18%), Positives = 24/66 (36%)
Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 375
L + Y A+ L + L P + +AL+ R Q+ + L++ + +
Sbjct: 7 NPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLV 66
Query: 376 DLLPND 381
P
Sbjct: 67 ARTPRY 72
Score = 27.9 bits (63), Expect = 5.1
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
+ R G ++ ++ L +E+AL P D
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQD 38
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 41.2 bits (98), Expect = 7e-05
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 16/112 (14%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
N GN Y+K +A Y+KA+ + A N+ K
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALE-LD---------------PNNAEAWYNLGNAYYKQG 57
Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 380
Y AI L ++PNN +A + G A ++++ ++ Y++AL+L PN
Sbjct: 58 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109
Score = 34.7 bits (81), Expect = 0.015
Identities = 19/69 (27%), Positives = 34/69 (49%)
Query: 313 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 372
A N+ K Y AI L ++PNN +A + G A ++++ ++ Y+
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 373 QALDLLPND 381
+AL+L PN+
Sbjct: 68 KALELDPNN 76
Score = 27.4 bits (62), Expect = 4.5
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 380
N+ +A + G A ++++ ++ Y++AL+L PN
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 41
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 40.4 bits (95), Expect = 8e-05
Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 317 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNV-KALFRRGRAQVSMNNFEQGLQDYEQAL 375
L + + A+ ++ L EP +A + G A + ++++ L +Y+ A+
Sbjct: 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62
Query: 376 DLLPND-----QQILKEI-AFVRK----QMRHH 398
+L P+ ++++ +I F K Q+ HH
Sbjct: 63 ELNPDSPALQARKMVMDILNFYNKDMYNQLEHH 95
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 42.9 bits (101), Expect = 1e-04
Identities = 17/132 (12%), Positives = 43/132 (32%), Gaps = 12/132 (9%)
Query: 256 QLNQMEDVIRTIKNSGNEYFKLNR--MHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYY 313
L +++ + YF R QR+Y A IK++ +++SK R
Sbjct: 86 LLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSA---IKFFKKAESKLIFVKDRIEK 142
Query: 314 TAALLNMAAVQLKFKAYKRAIN-------LCDDILLMEPNNVKALFRRGRAQVSMNNFEQ 366
M+ K +++ + + ++ + + +E
Sbjct: 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYED 202
Query: 367 GLQDYEQALDLL 378
+ +++A +
Sbjct: 203 AISHFQKAYSMA 214
Score = 41.7 bits (98), Expect = 3e-04
Identities = 12/103 (11%), Positives = 35/103 (33%), Gaps = 9/103 (8%)
Query: 281 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 340
++Y+ A I + ++ S + + L N+ + Y+ AI
Sbjct: 194 FLDLKQYEDA---ISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250
Query: 341 LLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 377
+ + P+ +A F + + ++ + + + +
Sbjct: 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY 293
Score = 37.9 bits (88), Expect = 0.005
Identities = 15/134 (11%), Positives = 44/134 (32%), Gaps = 16/134 (11%)
Query: 256 QLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTA 315
+ N + + + ++KL K KA +++++ + +Q+ Y +
Sbjct: 256 ESNILPSLPQAYFLITQIHYKLG-------KIDKA---HEYHSKGMAYSQKAGDVIYLSE 305
Query: 316 A--LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ 373
L ++ +A + + + +L + + NF++ + +
Sbjct: 306 FEFLKSLYLSGPDEEAIQGFFDFLESKMLY-ADLEDFAIDVAKYYHERKNFQKASAYFLK 364
Query: 374 ALDLLPNDQQILKE 387
+ Q I
Sbjct: 365 VEQV---RQLIQGG 375
Score = 37.9 bits (88), Expect = 0.005
Identities = 17/150 (11%), Positives = 49/150 (32%), Gaps = 17/150 (11%)
Query: 256 QLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTA 315
Q + + RT+ N G + +Y+ A+ Y + ++ + ++ +
Sbjct: 216 AEKQPQLMGRTLYNIGLCKNSQS-------QYEDAIPY---FKRAIAVFEESNILPSLPQ 265
Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLM----EPNNVKALFRRGRAQVSMNNFEQGLQDY 371
A + + K +A + + F ++ E+ +Q +
Sbjct: 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGF 325
Query: 372 EQALD---LLPNDQQILKEIAFVRKQMRHH 398
L+ L + + ++A + ++
Sbjct: 326 FDFLESKMLYADLEDFAIDVAKYYHERKNF 355
Score = 27.9 bits (62), Expect = 7.3
Identities = 13/127 (10%), Positives = 40/127 (31%), Gaps = 8/127 (6%)
Query: 261 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSK-TQQKHFRSYYTAALLN 319
+ I N Y + + DA+ ++ + + + Q + L
Sbjct: 10 SSIGEKI-NEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEY 68
Query: 320 MAAVQLKFKAYKRAINLCDDILLMEPNNVKAL------FRRGRAQVSMNNFEQGLQDYEQ 373
+ ++ + ++ + + + L F RG ++ + ++ +++
Sbjct: 69 LEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKK 128
Query: 374 ALDLLPN 380
A L
Sbjct: 129 AESKLIF 135
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 42.4 bits (99), Expect = 2e-04
Identities = 14/108 (12%), Positives = 37/108 (34%), Gaps = 9/108 (8%)
Query: 274 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA 333
+F+ + Q+ + + + + Q K+++ ++ + + + +
Sbjct: 135 HFRRVLLKSLQKDLHEE---MNYITAI-IEEQPKNYQVWH-----HRRVLVEWLRDPSQE 185
Query: 334 INLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
+ DIL + N A R ++ LQ +Q L +
Sbjct: 186 LEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN 233
Score = 38.1 bits (88), Expect = 0.004
Identities = 19/153 (12%), Positives = 49/153 (32%), Gaps = 10/153 (6%)
Query: 232 AENDGSQDVYPPFPE--DWKS-NPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYK 288
Y + + +W +P V N + + I S +++ + + +
Sbjct: 54 GFVSLDSPSYVLYRDRAEWADIDP--VPQNDGPNPVVQIIYS-DKFRDV--YDYFRAVLQ 108
Query: 289 KAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNV 348
+ R + + ++ + + YT ++ K +N I+ +P N
Sbjct: 109 RDERSERAFKLTRDAIELNA--ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY 166
Query: 349 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
+ R + + Q L+ L+ +
Sbjct: 167 QVWHHRRVLVEWLRDPSQELEFIADILNQDAKN 199
Score = 37.7 bits (87), Expect = 0.006
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
Query: 313 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN-NFEQGLQDY 371
+ AV + + +RA L D + + N R S+ + + +
Sbjct: 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYI 155
Query: 372 EQALDLLPNDQQI 384
++ P + Q+
Sbjct: 156 TAIIEEQPKNYQV 168
Score = 33.5 bits (76), Expect = 0.13
Identities = 12/82 (14%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 307 KHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNF-- 364
K++ ++ + V +FK + + D +L + N +R + +
Sbjct: 198 KNYHAWQ-----HRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND 252
Query: 365 ----EQGLQDYEQALDLLPNDQ 382
E+ +Q + + L+P+++
Sbjct: 253 RAVLEREVQYTLEMIKLVPHNE 274
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio
parahaemolyticus RIMD 22 structural genomics, PSI-2,
protein structure initiative; HET: MES; 2.14A {Vibrio
parahaemolyticus}
Length = 176
Score = 41.1 bits (96), Expect = 2e-04
Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 315 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQA 374
LL + L+ + +A+N+ + + + + FE ++
Sbjct: 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELA----QEL 62
Query: 375 LDLLPNDQQ 383
L +P + Q
Sbjct: 63 LATIPLEYQ 71
Score = 27.2 bits (60), Expect = 6.6
Identities = 6/46 (13%), Positives = 14/46 (30%)
Query: 344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA 389
+ + L ++ + Q L + D L + + A
Sbjct: 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKA 47
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 39.2 bits (92), Expect = 2e-04
Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 313 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 372
+A LK RA+ L ++++ +P+ V + G+ ++ + + Y
Sbjct: 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65
Query: 373 QALDLLPN--DQQILKEIAFVRKQM----RHH 398
Q +++ Q+ L E+ + + HH
Sbjct: 66 QGIEVAREEGTQKDLSELQDAKLKAEGLEHHH 97
Score = 31.9 bits (73), Expect = 0.093
Identities = 5/37 (13%), Positives = 17/37 (45%)
Query: 344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 380
+P + + + + +N + L +E+ ++ P+
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPD 39
Score = 31.5 bits (72), Expect = 0.12
Identities = 8/106 (7%), Positives = 25/106 (23%), Gaps = 21/106 (19%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
E+ K + A +++ V Y ++ + +
Sbjct: 12 ALAQEHLKHDNASRALALFEELVE----------------TDPDYVGTYYHLGKLYERLD 55
Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQA 374
AI+ + + + + + + + E
Sbjct: 56 RTDDAIDTYAQGIEVAREEGTQ-----KDLSELQDAKLKAEGLEHH 96
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 41.7 bits (98), Expect = 3e-04
Identities = 19/132 (14%), Positives = 43/132 (32%), Gaps = 12/132 (9%)
Query: 256 QLNQMEDVIRTIKNSGNEYFKLNR--MHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYY 313
L +E + + Y R Q++Y +A+ Y Y +++ +
Sbjct: 84 LLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGY---YREAEKELPFVSDDIEK 140
Query: 314 TAALLNMAAVQLKFKAYKRAIN-------LCDDILLMEPNNVKALFRRGRAQVSMNNFEQ 366
+A K ++ + + L +++LF ++++
Sbjct: 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDK 200
Query: 367 GLQDYEQALDLL 378
L E AL+L
Sbjct: 201 ALPHLEAALELA 212
Score = 39.8 bits (93), Expect = 0.001
Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 8/102 (7%)
Query: 281 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 340
+D + Y KA+ + + + +LLN+A + + A+
Sbjct: 192 YDDFKHYDKALPH---LEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248
Query: 341 LLME-----PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 377
+ K LF ++ Q E+ LD
Sbjct: 249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290
Score = 38.3 bits (89), Expect = 0.003
Identities = 15/150 (10%), Positives = 42/150 (28%), Gaps = 18/150 (12%)
Query: 256 QLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTA 315
+ + ++ N N Y + + AV + + ++ +K ++
Sbjct: 214 DIQNDRFIAISLLNIANSYDRSG-------DDQMAVEH---FQKA-AKVSREKVPDLLPK 262
Query: 316 ALLNMAAVQLKFKAYKRAINLCDDIL-LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQA 374
L ++ K ++A ++ L + + K ++ +
Sbjct: 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL 322
Query: 375 LDLL------PNDQQILKEIAFVRKQMRHH 398
L + + A V + H
Sbjct: 323 LSYFEKKNLHAYIEACARSAAAVFESSCHF 352
Score = 36.7 bits (85), Expect = 0.010
Identities = 15/132 (11%), Positives = 35/132 (26%), Gaps = 16/132 (12%)
Query: 258 NQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAA- 316
+ + + + K + +KA ++ + + + Y
Sbjct: 255 KVPDLLPKVLFGLSWTLCKAG-------QTQKA---FQFIEEGLDHITARSHKFYKELFL 304
Query: 317 -LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 375
L + + + ++ + L S +FEQ Y + L
Sbjct: 305 FLQAVYKETVDERKIHDLLSYFEKKNL-HAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363
Query: 376 DLLPNDQQILKE 387
+ ILK
Sbjct: 364 KA---QEDILKG 372
Score = 32.5 bits (74), Expect = 0.24
Identities = 18/141 (12%), Positives = 40/141 (28%), Gaps = 9/141 (6%)
Query: 256 QLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS-KTQQKHFRSYYT 314
Q+ + +D++ + + + + Y + ++ + + YY
Sbjct: 44 QMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYY- 102
Query: 315 AALLNMAAVQLKFKAYKRAINLCDDILLM------EPNNVKALFRRGRAQVSMNNFEQGL 368
+L + K Y AI + + + F+ A M +
Sbjct: 103 -SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSM 161
Query: 369 QDYEQALDLLPNDQQILKEIA 389
QALD+ N
Sbjct: 162 YHILQALDIYQNHPLYSIRTI 182
Score = 30.2 bits (68), Expect = 1.4
Identities = 21/131 (16%), Positives = 38/131 (29%), Gaps = 10/131 (7%)
Query: 260 MEDVIR--TIKNSGNEYFKLNRMHD---AQRKYKKAVRYIKWYNQSQSKTQQKH---FRS 311
M I + NE++K+ R A+ + + I+ + Q FR
Sbjct: 3 MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRH 62
Query: 312 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA--LFRRGRAQVSMNNFEQGLQ 369
L + + +K LF RG + + + +
Sbjct: 63 QLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIG 122
Query: 370 DYEQALDLLPN 380
Y +A LP
Sbjct: 123 YYREAEKELPF 133
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 40.3 bits (95), Expect = 4e-04
Identities = 16/131 (12%), Positives = 34/131 (25%), Gaps = 16/131 (12%)
Query: 281 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTA-ALLNMAAVQLKFKAYKRAINLCDD 339
+ A R + + + + +A V L F A +
Sbjct: 76 ERMAGNWDAARRC---FLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132
Query: 340 ILLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL------PNDQQILKE 387
L+ + A G N + Q + +A D+ +++
Sbjct: 133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTR 192
Query: 388 IAFVRKQMRHH 398
+ + HH
Sbjct: 193 LNGLEHHHHHH 203
Score = 31.1 bits (71), Expect = 0.48
Identities = 14/118 (11%), Positives = 31/118 (26%), Gaps = 13/118 (11%)
Query: 294 IKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM------EPNN 347
+ + + + A + V + A +
Sbjct: 6 HDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAE 65
Query: 348 VKALFRRGRAQVSMNNFEQGLQDYEQALDL---LPNDQ----QILKEIAFVRKQMRHH 398
+AL + G + N++ + + + +L LP D E+A V
Sbjct: 66 HRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL 123
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 39.1 bits (92), Expect = 6e-04
Identities = 18/114 (15%), Positives = 44/114 (38%), Gaps = 16/114 (14%)
Query: 281 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 340
+ +++ A Y Y ++ +Q R+ + ++ + Y++AI+
Sbjct: 59 YIFLGEFETASEY---YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 115
Query: 341 LLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 388
L + +A + G A ++ N +Q + E+ L +I +E+
Sbjct: 116 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL-------EISREV 162
Score = 36.7 bits (86), Expect = 0.005
Identities = 16/127 (12%), Positives = 42/127 (33%), Gaps = 16/127 (12%)
Query: 281 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 340
H ++ AV + Q ++ ++ A N+ + ++ A
Sbjct: 19 HYLLGNFRDAVIA---HEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT 75
Query: 341 LLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ 394
LL+ ++ + G + ++E+ + + + L I +E+ +
Sbjct: 76 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL-------AIAQELKDRIGE 128
Query: 395 MRHHLNL 401
R +L
Sbjct: 129 GRACWSL 135
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 0.002
Identities = 33/198 (16%), Positives = 62/198 (31%), Gaps = 53/198 (26%)
Query: 228 DWGVAEND-GSQDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFK--LNRMHDAQ 284
D+ E+ +D+ F + + N ++D+ ++I + E +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDN---FDCKDVQDMPKSILSK--EEIDHIIMSKDAVS 62
Query: 285 RKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 344
+ W S+ + + F +L YK LM
Sbjct: 63 G-----TLRLFWTLLSKQEEMVQKF----VEEVLR--------INYK---------FLMS 96
Query: 345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLN--LE 402
P + + Q SM + Y + D L ND Q+ + R Q L L
Sbjct: 97 P------IKTEQRQPSMMT-----RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 403 KMTYAR------MFQNGK 414
++ A+ + +GK
Sbjct: 146 ELRPAKNVLIDGVLGSGK 163
Score = 38.7 bits (89), Expect = 0.004
Identities = 42/310 (13%), Positives = 90/310 (29%), Gaps = 75/310 (24%)
Query: 101 NFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLAN 160
+F+ + I+ F + + NF+ + + E +
Sbjct: 8 DFETGEHQYQYKDILSVF--EDAFVDNFDCKDVQDMPKSILSKEEID---------HIIM 56
Query: 161 TGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNS 220
+ + + F TL +Q V + V V N K L++ T
Sbjct: 57 SKDAVSGTLRLFWTL--------------LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 221 GQLSLNEDWGVAENDGSQDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRM 280
Q S+ + + D + F + S + ++ + ++ + ++ +
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY--LKLRQALLELRP--AKNVLIDGV 158
Query: 281 ---------HDAQRKYKKAVRY---IKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
D YK + I W N + +L M +Q
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS---------PETVLEM--LQ---- 203
Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGL------QDYEQALDLLPN-- 380
L ++PN ++ +++ + L + YE L +L N
Sbjct: 204 ------KLL---YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 381 DQQILKEIAF 390
+ + AF
Sbjct: 255 NAKAWN--AF 262
Score = 27.9 bits (61), Expect = 9.0
Identities = 36/346 (10%), Positives = 76/346 (21%), Gaps = 126/346 (36%)
Query: 51 YGKGKLGK-ALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIY----GPCFEDENFKLK 105
G GK + +++ + +F I+ C E L+
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKM--------DFK------IFWLNLKNCNSPETV-LE 200
Query: 106 VISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPN 165
++ + ++I P + D + +I +L+ + + + N
Sbjct: 201 MLQKLLYQIDPNW-TSRSDHS-------SNIKLR-IHSIQAELRRLLKSKP------YEN 245
Query: 166 TNNSQFFITLAPCPHLDG---KNVV----FGCVRQGFGVAREVSYVEAENDKPLVTCTIT 218
+ L C K L+T T
Sbjct: 246 C----LLV-------LLNVQNAKAWNAFNLSC-------------------KILLT---T 272
Query: 219 NSGQLSLNEDWGVAENDGSQDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLN 278
Q++ + D E L +K L
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPD-----EVKSL--------LLKYLDCRPQDLP 319
Query: 279 RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD 338
R + + + I + +++ + I
Sbjct: 320 R--EVLTTNPRRLSII-AESIRDGLATWDNWK-------------HVNCDKLTTIIESSL 363
Query: 339 DILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 384
++L EP + +F L + P I
Sbjct: 364 NVL--EPAEYRKMF--------------------DRLSVFPPSAHI 387
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR,
tetratricopeptide repeat like, TPR-like, transport
protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Length = 158
Score = 37.4 bits (86), Expect = 0.002
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 14/102 (13%)
Query: 316 ALLNMAAVQL---KFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSM----------- 361
LL ++ + + AI ++ LL++P +A++ G A S
Sbjct: 45 VLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAK 104
Query: 362 NNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK 403
+NF+ Q ++QA+D P++ LK + K + H K
Sbjct: 105 HNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYK 146
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 37.7 bits (87), Expect = 0.005
Identities = 15/132 (11%), Positives = 33/132 (25%), Gaps = 16/132 (12%)
Query: 256 QLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTA 315
Q G Y KA+ Y + Q +
Sbjct: 109 HRGQFRRGANFKFELGEILEN------DLHDYAKAIDC---YELAGEWYAQDQSVALSNK 159
Query: 316 ALLNMAAVQLKFKAYKRAINL-------CDDILLMEPNNVKALFRRGRAQVSMNNFEQGL 368
+ A ++ Y A ++ L + + ++G Q++ +
Sbjct: 160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAA 219
Query: 369 QDYEQALDLLPN 380
+ ++ PN
Sbjct: 220 RTLQEGQSEDPN 231
Score = 34.6 bits (79), Expect = 0.043
Identities = 15/154 (9%), Positives = 43/154 (27%), Gaps = 17/154 (11%)
Query: 261 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNM 320
E+ + Y ++ A + KA + ++ ++ +
Sbjct: 34 EEAADLCVQAATIYRLRKELNLAGDSFLKA---ADYQKKAGNE-------DEAGNTYVEA 83
Query: 321 AAVQLKFKAYKRAINLCDDILLMEPNN------VKALFRRGRAQVS-MNNFEQGLQDYEQ 373
A++ ++ + + + F G + ++++ + + YE
Sbjct: 84 YKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143
Query: 374 ALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYA 407
A + DQ + K + A
Sbjct: 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2,
protein structure initiative; 2.15A {Vibrio
parahaemolyticus rimd 2210633}
Length = 93
Score = 34.1 bits (78), Expect = 0.014
Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 21/96 (21%)
Query: 314 TAALLNMAAVQLKFKAYK----RAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 369
TA L A L + + L + L +EP N AL ++F
Sbjct: 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIA-----NDHFISF-- 57
Query: 370 DYEQA-------LDLLPND---QQILKEIAFVRKQM 395
+++A LD + I++ I +K M
Sbjct: 58 RFQEAIDTWVLLLDSNDPNLDRVTIIESINKAKKLM 93
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 36.2 bits (83), Expect = 0.016
Identities = 10/98 (10%), Positives = 24/98 (24%), Gaps = 5/98 (5%)
Query: 288 KKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN 347
K+ + + + + Y A L + + + +E +
Sbjct: 255 KQLAALNTEIDNIVTLPELNNLSIIYQI----KAVSALVKGKTDESYQAINTGIDLEMS- 309
Query: 348 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL 385
G+ + Y A +L P +
Sbjct: 310 WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347
Score = 29.7 bits (66), Expect = 1.7
Identities = 9/73 (12%), Positives = 19/73 (26%), Gaps = 5/73 (6%)
Query: 345 PNNVKAL--FRRGRA---QVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL 399
P+ L F + + + + + + P E A V
Sbjct: 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQH 250
Query: 400 NLEKMTYARMFQN 412
L++ A +
Sbjct: 251 PLDEKQLAALNTE 263
Score = 29.3 bits (65), Expect = 2.3
Identities = 8/68 (11%), Positives = 19/68 (27%), Gaps = 8/68 (11%)
Query: 324 QLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNF--------EQGLQDYEQAL 375
K+ RA L +I+ P A + + ++ + + +
Sbjct: 209 HGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268
Query: 376 DLLPNDQQ 383
L +
Sbjct: 269 TLPELNNL 276
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 33.5 bits (78), Expect = 0.017
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 7/53 (13%)
Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 380
+ Y++A+ L +PNN +A + G A ++++ ++ Y++AL+L PN
Sbjct: 30 EYYQKALEL-------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Score = 27.4 bits (62), Expect = 2.8
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 380
N+ +A + G A ++++ ++ Y++AL+L PN
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 41
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.041
Identities = 41/229 (17%), Positives = 63/229 (27%), Gaps = 98/229 (42%)
Query: 192 RQGFG--------VAREV--------------SYVEAENDKPLVTCTITNSGQLSLNEDW 229
QG G A++V S ++ + P V TI G+
Sbjct: 1628 EQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNP-VNLTIHFGGEKGK---- 1682
Query: 230 GVAEN----------DGSQDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNR 279
+ EN DG F E +N E S L+
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKE----------IN--EHSTSYTFRSEKG--LLSA 1728
Query: 280 MHDAQRKYKKA--------VRYIKWYNQSQSKTQQK-----HFRS---YYTAALLNMAAV 323
Q A +K S+ H S Y AAL ++A V
Sbjct: 1729 TQFTQP----ALTLMEKAAFEDLK----SKGLIPADATFAGH--SLGEY--AALASLADV 1776
Query: 324 QLKFKAYKRAINLCDDILLMEPNNVKALFRRGRA-QVSMNNFEQGLQDY 371
+ ++ + + +F RG QV++ E G +Y
Sbjct: 1777 -MSIES---LVEV--------------VFYRGMTMQVAVPRDELGRSNY 1807
Score = 34.3 bits (78), Expect = 0.084
Identities = 48/253 (18%), Positives = 91/253 (35%), Gaps = 84/253 (33%)
Query: 204 VEAENDKPLVTCTITNSGQL--SL---NEDWGVAE--NDGSQDVYPPFPEDW------KS 250
++A + +PL T+++ G L L + +A + + P E + +
Sbjct: 1 MDAYSTRPL---TLSH-GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTT 56
Query: 251 NPETV--------------QLNQMEDVIRTIKNS-GNEYFKLNRMHDAQRKYKKAVRYIK 295
E V ++ Q + V+ N Y + N +H A + ++
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL------AAKLLQ 110
Query: 296 WYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFR-- 353
+ + KT++ ++Y TA ++ KR + + ALFR
Sbjct: 111 ENDTTLVKTKEL-IKNYITARIMA-----------KRPFD---------KKSNSALFRAV 149
Query: 354 -RGRAQVSMNNFE-QG--------LQD-YE--QAL--DLLPNDQQILKEIAFVRKQMRHH 398
G AQ+ + F QG L+D Y+ L DL+ + L E+ R
Sbjct: 150 GEGNAQL-VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI------RTT 202
Query: 399 LNLEKMTYARMFQ 411
L+ EK+ + +
Sbjct: 203 LDAEKV-FTQGLN 214
Score = 33.1 bits (75), Expect = 0.23
Identities = 58/421 (13%), Positives = 113/421 (26%), Gaps = 190/421 (45%)
Query: 20 GEEKVGRMVIELFKHIVPKTAENFRALCT--GEYGKGKLG-------------KALHFTG 64
G ++ G M ++L+K T++ + + + K G +HF G
Sbjct: 1625 GSQEQG-MGMDLYK-----TSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGG 1678
Query: 65 SRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGD 124
+ RI + + G+ F++ N + Y
Sbjct: 1679 EKGKRIRENYSAMIFE----TIVDGKLKTEKIFKEINEHS---TSY-------------- 1717
Query: 125 ITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQ---FFITLAPCPHL 181
F E +G LS T +Q + A
Sbjct: 1718 ---------------TFRSE--------KGLLSA-------TQFTQPALTLMEKA----- 1742
Query: 182 DGKNVVFGCVRQGFGVAREVSYV------E--AENDKPLVTCTITNSGQLSLNEDWGVAE 233
F ++ G+ + E A L + + +S+
Sbjct: 1743 -----AFEDLKSK-GLIPADATFAGHSLGEYAA-----LASL----ADVMSI-------- 1779
Query: 234 NDGSQDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRY 293
E ++ + G + AV
Sbjct: 1780 ---------------------------ESLVEVVFYRG-------------MTMQVAV-- 1797
Query: 294 IKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFR 353
+ + RS Y +N V A + + L V+ + +
Sbjct: 1798 ----------PRDELGRSNYGMIAINPGRV---------AASFSQEAL---QYVVERVGK 1835
Query: 354 RGRAQVSMNNF-EQGLQDY-----EQALDLLPNDQQILKEIAFVRK----QMRHHLNLEK 403
R V + N+ + Q Y +ALD + N +L I ++K +++ L+LE+
Sbjct: 1836 RTGWLVEIVNYNVENQQ-YVAAGDLRALDTVTN---VLNFIK-LQKIDIIELQKSLSLEE 1890
Query: 404 M 404
+
Sbjct: 1891 V 1891
Score = 31.2 bits (70), Expect = 0.80
Identities = 26/192 (13%), Positives = 45/192 (23%), Gaps = 91/192 (47%)
Query: 9 GNYIVFLDVSIGEEKVGRMVIELFKH----------IV-------PKTAENFRALCTGEY 51
+Y+V + G EL + +V + E+F
Sbjct: 247 AHYVVTAKLL------GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR--- 297
Query: 52 GKGKLGKALH---FTGSRFHRIIPQFMIQGGDITNF--NGTGGESIYGPCFEDENFKLKV 106
KA+ F G R + P + + + N G S
Sbjct: 298 ------KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS--------------- 336
Query: 107 ISQYFHRIIPQFMIQGGD-------ITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLA 159
P I + N + P ++ ++SL
Sbjct: 337 ---------PMLSISNLTQEQVQDYVNKTNS------HLP----AGKQV------EISLV 371
Query: 160 N-------TGHP 164
N +G P
Sbjct: 372 NGAKNLVVSGPP 383
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 34.8 bits (79), Expect = 0.043
Identities = 13/163 (7%), Positives = 46/163 (28%), Gaps = 22/163 (13%)
Query: 249 KSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKH 308
K + + + + N Y + + +++ ++ ++
Sbjct: 140 KLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE---------ALHD 190
Query: 309 FRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN------VKALFRRGRAQVSM- 361
+ N A Y+ ++ + + + + ++RG +
Sbjct: 191 NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLE 250
Query: 362 NNFEQGLQDYEQALDLL------PNDQQILKEIAFVRKQMRHH 398
+ Y++A + ++ +I+ + HH
Sbjct: 251 YEEAEIEDAYKKASFFFDILEMHAYKEALVNKISRLEHHHHHH 293
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens}
SCOP: a.118.8.1
Length = 152
Score = 31.4 bits (71), Expect = 0.27
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 286 KYKKAVRY-IKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 344
KY +R I + K ++ R Y + +A + K Y++A+ +L E
Sbjct: 46 KYNDDIRKGIVLLEELLPKGSKEEQRDY----VFYLAVGNYRLKEYEKALKYVRGLLQTE 101
Query: 345 PNNVKAL 351
P N +A
Sbjct: 102 PQNNQAK 108
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A
{Xanthomonas campestris}
Length = 129
Score = 30.8 bits (70), Expect = 0.31
Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 9/107 (8%)
Query: 283 AQRKYKKAVRYIKWYNQSQSKTQQKHF-----RSYYTA-ALLNMAAVQLKFKAYKRAINL 336
A+ Y A +K + F YT AL + + ++ A
Sbjct: 2 ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQ 61
Query: 337 CDDILLMEPNNVK---ALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 380
D++ P + K L + G +Q + Q +Q P
Sbjct: 62 FRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPG 108
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 31.5 bits (71), Expect = 0.54
Identities = 15/109 (13%), Positives = 27/109 (24%), Gaps = 8/109 (7%)
Query: 274 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTA-ALLNMAAVQLKFKAYKR 332
L + A+ A N+ ++ + S + + A
Sbjct: 177 LAMLIQCSLARGDLDNARS---QLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAA 233
Query: 333 AINLCDDILLME----PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 377
A N E RAQ+ + FE E+ +
Sbjct: 234 AANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282
Score = 29.9 bits (67), Expect = 1.5
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 356 RAQV--SMNNFEQGLQDYEQALDLLPNDQQILKEIA 389
RAQV + N ++ + + AL+ LP + +A
Sbjct: 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVA 55
Score = 29.9 bits (67), Expect = 1.6
Identities = 9/71 (12%), Positives = 21/71 (29%), Gaps = 6/71 (8%)
Query: 315 AALLNMAAVQLKFKAYKRAINLCDDILLME------PNNVKALFRRGRAQVSMNNFEQGL 368
A + V R++ L M + +L ++ + +
Sbjct: 54 VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAW 113
Query: 369 QDYEQALDLLP 379
+ E+A L+
Sbjct: 114 ETQEKAFQLIN 124
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 144
Score = 30.2 bits (68), Expect = 0.57
Identities = 8/35 (22%), Positives = 11/35 (31%)
Query: 317 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKAL 351
L + K Y A D + E NN +
Sbjct: 80 LYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function;
2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Length = 126
Score = 29.8 bits (67), Expect = 0.62
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 326 KFKAYKRAINLCDDILLMEPNNVKAL 351
+ K Y++A+ +L EP N +A
Sbjct: 86 RLKEYEKALKYVRGLLQTEPQNNQAK 111
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR,
scaffold, peroxisome, membrane fission, protein binding;
1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A
3uux_A
Length = 134
Score = 29.9 bits (67), Expect = 0.75
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 326 KFKAYKRAINLCDDILLMEPNNVKAL 351
K Y A D + E NN +
Sbjct: 90 KLGEYSMAKRYVDTLFEHERNNKQVG 115
>2y3u_A Collagenase, collagenase G; hydrolase, gluzincin, metalloprotease;
HET: P6G FLC; 2.55A {Clostridium histolyticum} PDB:
2y50_A* 2y6i_A*
Length = 785
Score = 30.2 bits (67), Expect = 1.3
Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 1/111 (0%)
Query: 213 VTCTITNSGQLSLNEDWGVAENDGSQDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNSGN 272
LS E + +N + F S N+++ +I ++ SG
Sbjct: 22 TMYDFEYLNGLSYTELTNLIKNIKWNQINGLFNYSTGSQKFFGDKNRVQAIINALQESGR 81
Query: 273 EYFKLNRMHDAQ-RKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAA 322
Y + + +A Y+ +YN S ++F+ A++ +
Sbjct: 82 TYTANDMKGIETFTEVLRAGFYLGYYNDGLSYLNDRNFQDKCIPAMIAIQK 132
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal
binding protein; HET: PLP B12 5AD; 2.01A {Clostridium
sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A*
3kox_A*
Length = 763
Score = 28.8 bits (64), Expect = 3.7
Identities = 23/114 (20%), Positives = 31/114 (27%), Gaps = 24/114 (21%)
Query: 36 VPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRII-----------PQFMIQGGDITNF 84
VP T + RA KAL R I P +
Sbjct: 130 VPITRKQVRAQ----------RKALDLIEEEVGRPINYHSYVSGVAGPDIAVMFA-EEGV 178
Query: 85 NGTGGESIYGPCFEDENFKLKVISQYFHRIIPQF--MIQGGDITNFNGTGGESI 136
NG + Y + + N I + I + M Q N N T E+
Sbjct: 179 NGAHQDPQYNVLYRNINMIRSFIDACESKTIMAWADMAQIDGAHNANATAREAW 232
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 27.9 bits (61), Expect = 4.3
Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 12/79 (15%)
Query: 318 LNMAAVQLKFKAYKRAINLCDDILLMEPN------------NVKALFRRGRAQVSMNNFE 365
L+ A QL Y A C + + + A + +F+
Sbjct: 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFD 74
Query: 366 QGLQDYEQALDLLPNDQQI 384
+ L ++AL ++
Sbjct: 75 EALHSADKALHYFNRRGEL 93
>2ae8_A IGPD, imidazoleglycerol-phosphate dehydratase; beta-alpha-beta
sandwich, duplication of A half-domain; 2.01A
{Staphylococcus aureus subsp} SCOP: d.14.1.9 d.14.1.9
Length = 221
Score = 28.0 bits (63), Expect = 5.2
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 8/38 (21%)
Query: 11 YIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCT 48
Y+ F + S+ +EKVG EL + FRA+
Sbjct: 141 YLSF-NASLSKEKVGTFDTELVEEF-------FRAVVI 170
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 28.1 bits (62), Expect = 5.9
Identities = 14/121 (11%), Positives = 36/121 (29%), Gaps = 7/121 (5%)
Query: 257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAA 316
L + E++ + E +R+ Q ++ ++
Sbjct: 200 LERAEELCSQVNEGVREKENSDRLEWIQAH-------VQCEGLAEQLIFNSLTNCLGPRK 252
Query: 317 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD 376
LL+ + + L +D LL+ + G ++ + + Y+ +
Sbjct: 253 LLHSGKLYKTKSNKELHGFLFNDFLLLTYMVKQFAVSSGSEKLFSSKSNAQFKMYKTPIF 312
Query: 377 L 377
L
Sbjct: 313 L 313
>3mdo_A Putative phosphoribosylformylglycinamidine cyclo-; structural
genomics, joint center for structural genomics; HET:
MSE PGE P6G PG4; 1.91A {Parabacteroides distasonis}
Length = 389
Score = 28.1 bits (63), Expect = 6.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 17 VSIGEEKVGRMVIELFKHIVPKT 39
VS +E V + + K I PK
Sbjct: 12 VSASKEDVHNAIKNIDKGIFPKA 34
>1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann
domain, PLP, cobalamin, 5'-deoxyad radical,
adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium
sticklandii} SCOP: c.1.19.4
Length = 516
Score = 27.9 bits (62), Expect = 7.4
Identities = 27/109 (24%), Positives = 40/109 (36%), Gaps = 24/109 (22%)
Query: 36 VPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRII-----------PQFMIQGGDITNF 84
T ENFR + +AL G+ + I P+ G I
Sbjct: 206 TYATQENFRLM----------REALDKVGAEVGKYIRLCNYCSGLCMPEIAAMGA-IERL 254
Query: 85 NGTGGESIYGPCFEDENFKLKVISQYFHRIIPQF--MIQGGDITNFNGT 131
+ +++YG F D N + +I Q F RII F +I N+ T
Sbjct: 255 DVMLNDALYGILFRDINMQRTMIDQNFSRIINGFAGVIINTGEDNYLTT 303
>2f1d_A IGPD 1, imidazoleglycerol-phosphate dehydratase 1; herbicide,
manganese, histidine biosynthesis, lyase; 3.00A
{Arabidopsis thaliana} SCOP: d.14.1.9 d.14.1.9
Length = 207
Score = 27.1 bits (61), Expect = 7.8
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 17/64 (26%)
Query: 11 YIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALH---FTGSRF 67
Y+ + ++ I ++VG +L +H F++L G LH G
Sbjct: 123 YLGY-NLEIPTQRVGTYDTQLVEHF-------FQSLVNT------SGMTLHIRQLAGENS 168
Query: 68 HRII 71
H II
Sbjct: 169 HHII 172
>1rhy_A IGPD, imidazole glycerol phosphate dehydratase; dehydratases,
histidine biosynthesis, LEFT-handed B-A-B CROS motif,
gene duplication; 2.30A {Filobasidiella neoformans}
SCOP: d.14.1.9 d.14.1.9
Length = 202
Score = 27.2 bits (61), Expect = 7.8
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 8/39 (20%)
Query: 11 YIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTG 49
Y + + EKVG + E+ H+ ++
Sbjct: 121 YFMC-HLPFTREKVGDLSTEMVSHL-------LQSFAFA 151
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.413
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,407,176
Number of extensions: 386336
Number of successful extensions: 1549
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1127
Number of HSP's successfully gapped: 385
Length of query: 414
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 318
Effective length of database: 4,021,377
Effective search space: 1278797886
Effective search space used: 1278797886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)