Query psy7930
Match_columns 146
No_of_seqs 151 out of 687
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 22:30:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7930.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7930hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11572 copper homeostasis pr 100.0 4.9E-60 1.1E-64 391.5 16.9 131 10-141 2-132 (248)
2 PF03932 CutC: CutC family; I 100.0 2.7E-60 5.9E-65 382.6 14.4 131 10-141 1-131 (201)
3 COG3142 CutC Uncharacterized p 100.0 1.8E-59 4E-64 384.2 14.1 133 9-142 1-133 (241)
4 KOG4013|consensus 100.0 8.7E-57 1.9E-61 364.1 9.9 133 8-141 8-140 (255)
5 TIGR01163 rpe ribulose-phospha 98.3 9E-06 1.9E-10 63.4 9.7 71 18-103 13-87 (210)
6 PRK05742 nicotinate-nucleotide 97.6 0.00066 1.4E-08 57.5 9.5 75 9-108 189-267 (277)
7 TIGR00078 nadC nicotinate-nucl 97.3 0.0018 3.9E-08 54.3 9.0 81 9-112 178-261 (265)
8 cd00945 Aldolase_Class_I Class 97.2 0.0074 1.6E-07 45.6 11.1 105 18-132 67-180 (201)
9 TIGR03151 enACPred_II putative 97.2 0.0063 1.4E-07 51.8 11.6 105 14-134 114-224 (307)
10 cd01568 QPRTase_NadC Quinolina 97.2 0.0025 5.5E-08 53.3 8.7 81 9-112 181-266 (269)
11 cd01572 QPRTase Quinolinate ph 97.1 0.0054 1.2E-07 51.5 10.1 81 9-112 182-265 (268)
12 PRK08072 nicotinate-nucleotide 97.1 0.0052 1.1E-07 52.0 9.9 82 9-111 188-270 (277)
13 PRK00043 thiE thiamine-phospha 97.1 0.0083 1.8E-07 46.7 10.2 95 10-121 105-207 (212)
14 cd00331 IGPS Indole-3-glycerol 97.1 0.0094 2E-07 47.3 10.6 86 20-125 35-120 (217)
15 PRK15452 putative protease; Pr 97.1 0.0077 1.7E-07 54.0 11.1 89 8-102 2-96 (443)
16 cd00564 TMP_TenI Thiamine mono 97.0 0.013 2.9E-07 44.3 10.3 79 9-102 95-178 (196)
17 PF03060 NMO: Nitronate monoox 96.8 0.01 2.2E-07 50.6 9.6 110 9-134 136-253 (330)
18 cd01573 modD_like ModD; Quinol 96.7 0.01 2.2E-07 49.9 8.8 82 10-112 184-268 (272)
19 cd04724 Tryptophan_synthase_al 96.7 0.01 2.2E-07 48.7 8.5 91 19-123 17-126 (242)
20 TIGR00693 thiE thiamine-phosph 96.7 0.025 5.5E-07 43.8 10.3 79 9-102 96-180 (196)
21 PRK07428 nicotinate-nucleotide 96.7 0.013 2.9E-07 49.9 9.2 79 10-111 197-281 (288)
22 PRK07565 dihydroorotate dehydr 96.6 0.016 3.5E-07 49.4 9.2 94 10-114 104-209 (334)
23 PLN02716 nicotinate-nucleotide 96.6 0.02 4.2E-07 49.6 9.4 89 10-112 204-301 (308)
24 PRK05848 nicotinate-nucleotide 96.5 0.024 5.3E-07 48.0 9.6 82 10-111 183-267 (273)
25 PRK07695 transcriptional regul 96.5 0.031 6.8E-07 44.0 9.7 82 9-106 95-182 (201)
26 cd04730 NPD_like 2-Nitropropan 96.5 0.071 1.5E-06 42.3 11.4 94 15-124 108-209 (236)
27 PRK13125 trpA tryptophan synth 96.4 0.041 8.8E-07 45.0 10.1 85 25-123 27-126 (244)
28 cd02801 DUS_like_FMN Dihydrour 96.3 0.11 2.5E-06 40.9 12.0 110 10-128 57-187 (231)
29 cd04727 pdxS PdxS is a subunit 96.3 0.025 5.3E-07 48.5 8.6 80 10-102 113-225 (283)
30 cd04739 DHOD_like Dihydroorota 96.3 0.033 7.1E-07 47.6 9.2 92 11-113 103-206 (325)
31 cd02803 OYE_like_FMN_family Ol 96.3 0.074 1.6E-06 44.5 11.0 102 20-128 145-285 (327)
32 cd00958 DhnA Class I fructose- 96.3 0.056 1.2E-06 43.3 9.8 79 10-103 125-215 (235)
33 TIGR00343 pyridoxal 5'-phospha 96.2 0.023 5.1E-07 48.7 7.9 95 15-122 120-248 (287)
34 PRK07259 dihydroorotate dehydr 96.2 0.029 6.2E-07 46.8 8.3 81 10-101 94-188 (301)
35 PRK06512 thiamine-phosphate py 96.2 0.041 8.9E-07 44.9 8.9 96 10-123 111-213 (221)
36 cd00331 IGPS Indole-3-glycerol 96.2 0.052 1.1E-06 43.1 9.3 76 12-102 124-201 (217)
37 PRK09016 quinolinate phosphori 96.2 0.033 7.2E-07 47.8 8.6 81 10-111 209-290 (296)
38 PRK08385 nicotinate-nucleotide 96.1 0.029 6.3E-07 47.7 7.9 83 10-111 183-269 (278)
39 PF01729 QRPTase_C: Quinolinat 96.1 0.0045 9.8E-08 48.8 2.7 78 11-107 82-160 (169)
40 PRK06852 aldolase; Validated 96.0 0.057 1.2E-06 46.6 9.0 103 22-129 121-235 (304)
41 cd02810 DHOD_DHPD_FMN Dihydroo 95.9 0.067 1.4E-06 44.1 8.9 83 11-102 102-196 (289)
42 cd04729 NanE N-acetylmannosami 95.9 0.11 2.5E-06 41.3 10.0 79 10-102 124-206 (219)
43 TIGR00735 hisF imidazoleglycer 95.9 0.12 2.5E-06 42.5 10.2 88 19-121 158-248 (254)
44 PRK09856 fructoselysine 3-epim 95.9 0.31 6.7E-06 39.3 12.5 109 20-130 17-148 (275)
45 COG0157 NadC Nicotinate-nucleo 95.8 0.071 1.5E-06 45.7 8.8 84 10-112 189-273 (280)
46 cd04731 HisF The cyclase subun 95.8 0.13 2.7E-06 41.5 9.9 91 15-120 148-241 (243)
47 cd04732 HisA HisA. Phosphorib 95.8 0.32 7E-06 38.5 12.1 104 16-129 82-195 (234)
48 cd00381 IMPDH IMPDH: The catal 95.7 0.057 1.2E-06 46.3 8.1 76 15-104 142-228 (325)
49 cd04740 DHOD_1B_like Dihydroor 95.7 0.096 2.1E-06 43.4 9.0 81 10-101 92-185 (296)
50 cd04726 KGPDC_HPS 3-Keto-L-gul 95.6 0.17 3.6E-06 39.2 9.8 82 10-106 106-191 (202)
51 PRK13209 L-xylulose 5-phosphat 95.6 0.58 1.3E-05 38.0 13.1 112 20-131 25-158 (283)
52 PRK06559 nicotinate-nucleotide 95.5 0.098 2.1E-06 44.9 8.7 82 10-112 198-280 (290)
53 PRK00278 trpC indole-3-glycero 95.5 0.17 3.6E-06 42.1 9.8 80 12-106 163-245 (260)
54 PRK00278 trpC indole-3-glycero 95.4 0.21 4.6E-06 41.5 10.3 98 10-128 52-162 (260)
55 PRK06096 molybdenum transport 95.4 0.098 2.1E-06 44.6 8.4 84 10-112 190-274 (284)
56 TIGR00289 conserved hypothetic 95.4 0.18 3.9E-06 41.5 9.5 54 45-107 44-97 (222)
57 PRK01130 N-acetylmannosamine-6 95.4 0.22 4.7E-06 39.7 9.8 75 14-102 124-202 (221)
58 PRK06978 nicotinate-nucleotide 95.3 0.11 2.4E-06 44.7 8.5 77 10-107 206-282 (294)
59 TIGR00007 phosphoribosylformim 95.3 0.21 4.6E-06 39.7 9.6 107 16-129 81-194 (230)
60 PF04131 NanE: Putative N-acet 95.3 0.08 1.7E-06 43.1 7.0 74 13-102 96-173 (192)
61 PRK13585 1-(5-phosphoribosyl)- 95.3 0.3 6.6E-06 39.1 10.4 87 20-123 36-123 (241)
62 PRK13111 trpA tryptophan synth 95.2 0.3 6.5E-06 40.8 10.6 94 20-129 30-147 (258)
63 PRK06106 nicotinate-nucleotide 95.2 0.13 2.9E-06 43.8 8.5 82 10-112 195-277 (281)
64 PF02581 TMP-TENI: Thiamine mo 95.2 0.23 4.9E-06 38.6 9.2 76 9-101 95-176 (180)
65 cd02809 alpha_hydroxyacid_oxid 95.2 0.17 3.7E-06 42.5 9.0 74 16-103 180-257 (299)
66 TIGR01334 modD putative molybd 95.1 0.13 2.7E-06 43.8 8.2 84 10-112 189-273 (277)
67 cd04731 HisF The cyclase subun 95.1 0.23 4.9E-06 40.0 9.3 104 16-129 80-198 (243)
68 cd02940 DHPD_FMN Dihydropyrimi 95.1 0.14 3.1E-06 43.0 8.3 80 11-101 103-199 (299)
69 PLN02274 inosine-5'-monophosph 95.1 0.14 3E-06 46.7 8.8 75 16-104 297-382 (505)
70 PRK04180 pyridoxal biosynthesi 95.0 0.073 1.6E-06 45.9 6.5 75 15-102 127-234 (293)
71 PLN02446 (5-phosphoribosyl)-5- 95.0 0.46 9.9E-06 40.3 11.2 93 19-129 46-139 (262)
72 PRK01060 endonuclease IV; Prov 95.0 0.57 1.2E-05 38.0 11.5 82 20-102 16-109 (281)
73 cd00452 KDPG_aldolase KDPG and 95.0 0.16 3.5E-06 39.8 7.9 73 14-106 102-175 (190)
74 PRK11815 tRNA-dihydrouridine s 95.0 0.63 1.4E-05 40.0 12.1 115 9-128 66-209 (333)
75 cd02809 alpha_hydroxyacid_oxid 94.9 0.82 1.8E-05 38.4 12.5 92 21-127 134-230 (299)
76 TIGR00542 hxl6Piso_put hexulos 94.9 0.68 1.5E-05 37.7 11.7 111 20-131 20-153 (279)
77 cd00429 RPE Ribulose-5-phospha 94.8 0.24 5.3E-06 38.2 8.5 47 20-68 16-68 (211)
78 TIGR00737 nifR3_yhdG putative 94.8 0.54 1.2E-05 39.7 11.1 111 10-128 65-196 (319)
79 PRK06543 nicotinate-nucleotide 94.8 0.24 5.2E-06 42.3 8.9 77 10-107 194-270 (281)
80 PRK07896 nicotinate-nucleotide 94.8 0.17 3.8E-06 43.3 8.1 84 10-112 200-285 (289)
81 PRK08999 hypothetical protein; 94.8 0.46 1E-05 39.5 10.5 75 10-101 227-307 (312)
82 cd03174 DRE_TIM_metallolyase D 94.8 0.47 1E-05 38.0 10.2 69 23-106 26-98 (265)
83 cd04736 MDH_FMN Mandelate dehy 94.7 0.23 4.9E-06 43.8 8.8 76 11-102 241-318 (361)
84 PF03437 BtpA: BtpA family; I 94.6 0.47 1E-05 39.9 10.2 84 22-123 164-253 (254)
85 COG0434 SgcQ Predicted TIM-bar 94.6 0.38 8.1E-06 40.9 9.4 90 18-125 164-260 (263)
86 PRK07455 keto-hydroxyglutarate 94.5 0.34 7.3E-06 38.4 8.7 68 16-102 112-180 (187)
87 PRK13210 putative L-xylulose 5 94.5 2.1 4.6E-05 34.5 13.5 111 20-131 20-153 (284)
88 PRK05581 ribulose-phosphate 3- 94.4 0.48 1.1E-05 37.1 9.4 47 20-68 20-72 (220)
89 cd04728 ThiG Thiazole synthase 94.4 0.34 7.4E-06 40.9 8.9 78 11-102 126-204 (248)
90 COG0826 Collagenase and relate 94.4 1.1 2.3E-05 39.2 12.3 107 7-128 4-117 (347)
91 cd01994 Alpha_ANH_like_IV This 94.4 0.64 1.4E-05 37.1 10.1 86 17-108 11-101 (194)
92 PLN02424 ketopantoate hydroxym 94.4 0.28 6.1E-06 43.0 8.5 74 26-106 124-206 (332)
93 PRK01130 N-acetylmannosamine-6 94.4 0.79 1.7E-05 36.4 10.6 64 22-102 29-95 (221)
94 PRK00208 thiG thiazole synthas 94.3 0.37 7.9E-06 40.8 8.9 75 11-102 126-204 (250)
95 TIGR00290 MJ0570_dom MJ0570-re 94.3 0.21 4.5E-06 41.2 7.3 80 18-108 13-98 (223)
96 TIGR03572 WbuZ glycosyl amidat 94.3 0.41 8.9E-06 38.3 8.9 70 19-102 156-227 (232)
97 PRK05458 guanosine 5'-monophos 94.3 0.32 6.9E-06 42.3 8.7 75 16-104 148-232 (326)
98 PRK02615 thiamine-phosphate py 94.3 0.59 1.3E-05 40.9 10.4 97 9-121 240-341 (347)
99 PF01261 AP_endonuc_2: Xylose 94.3 0.26 5.7E-06 37.0 7.3 110 23-133 2-134 (213)
100 PRK07226 fructose-bisphosphate 94.2 0.5 1.1E-05 39.1 9.4 92 20-122 97-195 (267)
101 PRK02412 aroD 3-dehydroquinate 94.2 1.6 3.4E-05 36.1 12.3 118 11-138 19-150 (253)
102 PRK08227 autoinducer 2 aldolas 94.1 0.34 7.3E-06 41.0 8.3 65 21-103 163-227 (264)
103 TIGR03234 OH-pyruv-isom hydrox 94.1 2 4.4E-05 34.3 12.5 106 18-130 15-142 (254)
104 TIGR03679 arCOG00187 arCOG0018 94.1 0.76 1.6E-05 37.2 10.1 85 17-108 9-99 (218)
105 TIGR00736 nifR3_rel_arch TIM-b 94.1 1.3 2.9E-05 36.6 11.6 109 9-128 69-195 (231)
106 PLN02535 glycolate oxidase 94.1 0.27 5.9E-06 43.3 8.0 77 11-103 228-308 (364)
107 PLN02493 probable peroxisomal 94.0 0.3 6.4E-06 43.2 8.1 74 10-102 228-308 (367)
108 PLN02591 tryptophan synthase 93.9 0.49 1.1E-05 39.6 8.8 90 20-123 20-128 (250)
109 PTZ00314 inosine-5'-monophosph 93.9 0.75 1.6E-05 41.8 10.6 97 9-123 229-341 (495)
110 PLN02979 glycolate oxidase 93.9 0.33 7.3E-06 43.0 8.1 74 10-102 227-307 (366)
111 TIGR02129 hisA_euk phosphoribo 93.8 1.2 2.5E-05 37.6 11.0 91 19-129 41-132 (253)
112 PLN02495 oxidoreductase, actin 93.8 0.34 7.3E-06 43.0 8.0 70 22-102 133-214 (385)
113 PRK02083 imidazole glycerol ph 93.7 1.1 2.3E-05 36.6 10.4 89 18-123 31-121 (253)
114 cd01292 metallo-dependent_hydr 93.7 1.9 4.2E-05 32.9 11.3 110 20-132 39-154 (275)
115 PRK14024 phosphoribosyl isomer 93.7 0.61 1.3E-05 38.1 8.9 89 19-118 149-238 (241)
116 PRK00748 1-(5-phosphoribosyl)- 93.7 2.4 5.3E-05 33.6 12.2 101 16-129 83-195 (233)
117 cd00945 Aldolase_Class_I Class 93.6 0.94 2E-05 34.0 9.2 90 22-129 19-118 (201)
118 cd07937 DRE_TIM_PC_TC_5S Pyruv 93.6 0.81 1.8E-05 38.2 9.6 102 22-130 27-137 (275)
119 PRK13585 1-(5-phosphoribosyl)- 93.6 1.1 2.5E-05 35.8 10.2 111 12-129 77-198 (241)
120 PRK13587 1-(5-phosphoribosyl)- 93.5 1.2 2.6E-05 36.5 10.4 107 16-130 85-198 (234)
121 COG2070 Dioxygenases related t 93.5 1.2 2.5E-05 38.8 10.8 112 9-136 127-249 (336)
122 PRK04128 1-(5-phosphoribosyl)- 93.5 1.5 3.2E-05 35.8 10.9 89 17-123 30-119 (228)
123 TIGR00693 thiE thiamine-phosph 93.5 0.13 2.9E-06 39.8 4.5 90 20-132 17-106 (196)
124 TIGR01949 AroFGH_arch predicte 93.5 0.66 1.4E-05 38.1 8.8 97 20-128 94-196 (258)
125 TIGR00735 hisF imidazoleglycer 93.4 1.2 2.6E-05 36.5 10.2 95 18-129 31-127 (254)
126 TIGR03572 WbuZ glycosyl amidat 93.4 0.93 2E-05 36.2 9.4 106 16-128 83-201 (232)
127 cd00502 DHQase_I Type I 3-dehy 93.4 3.4 7.4E-05 33.1 12.8 110 18-137 11-127 (225)
128 PRK01033 imidazole glycerol ph 93.4 1.1 2.3E-05 37.1 9.9 106 16-128 83-200 (258)
129 PRK06843 inosine 5-monophospha 93.4 0.5 1.1E-05 42.3 8.4 74 15-104 201-287 (404)
130 PRK08318 dihydropyrimidine deh 93.3 0.36 7.7E-06 42.3 7.4 79 11-100 103-198 (420)
131 PRK09989 hypothetical protein; 93.3 2.7 5.9E-05 33.9 12.0 103 18-126 16-137 (258)
132 TIGR00007 phosphoribosylformim 93.3 1.6 3.5E-05 34.7 10.6 87 20-123 32-119 (230)
133 TIGR01037 pyrD_sub1_fam dihydr 93.3 0.93 2E-05 37.7 9.5 81 10-101 93-188 (300)
134 PRK02083 imidazole glycerol ph 93.2 1.6 3.4E-05 35.5 10.6 92 19-126 156-250 (253)
135 cd07948 DRE_TIM_HCS Saccharomy 93.2 1.6 3.5E-05 36.3 10.8 109 14-131 69-191 (262)
136 PRK13586 1-(5-phosphoribosyl)- 93.1 1.1 2.4E-05 36.8 9.5 100 16-121 82-188 (232)
137 PF01680 SOR_SNZ: SOR/SNZ fami 93.1 0.44 9.5E-06 39.1 7.0 70 16-99 21-97 (208)
138 TIGR00262 trpA tryptophan synt 93.1 1.1 2.4E-05 37.2 9.7 90 20-123 28-137 (256)
139 cd07943 DRE_TIM_HOA 4-hydroxy- 93.0 1.6 3.5E-05 35.8 10.5 103 16-130 85-191 (263)
140 cd04734 OYE_like_3_FMN Old yel 93.0 1.1 2.5E-05 38.5 9.9 80 19-101 144-248 (343)
141 cd07944 DRE_TIM_HOA_like 4-hyd 93.0 1.8 3.8E-05 36.1 10.8 93 22-130 26-128 (266)
142 TIGR01769 GGGP geranylgeranylg 93.0 0.72 1.6E-05 37.6 8.2 67 20-102 138-205 (205)
143 cd07944 DRE_TIM_HOA_like 4-hyd 93.0 1.8 3.8E-05 36.1 10.7 100 18-130 84-189 (266)
144 PF01791 DeoC: DeoC/LacD famil 93.0 0.19 4.1E-06 40.6 4.8 88 9-102 127-230 (236)
145 cd04727 pdxS PdxS is a subunit 93.0 0.53 1.1E-05 40.5 7.7 70 16-99 15-91 (283)
146 TIGR01919 hisA-trpF 1-(5-phosp 93.0 2.2 4.7E-05 35.2 11.2 106 16-128 83-197 (243)
147 COG0352 ThiE Thiamine monophos 92.9 1.6 3.4E-05 35.8 10.0 99 8-122 103-206 (211)
148 PRK06852 aldolase; Validated 92.8 0.86 1.9E-05 39.4 8.8 73 21-103 193-266 (304)
149 PRK00748 1-(5-phosphoribosyl)- 92.7 2.4 5.1E-05 33.6 10.7 89 17-122 30-120 (233)
150 PRK14024 phosphoribosyl isomer 92.7 2.1 4.5E-05 34.9 10.6 104 16-129 84-195 (241)
151 TIGR00742 yjbN tRNA dihydrouri 92.7 4.7 0.0001 34.6 13.1 115 10-129 57-200 (318)
152 cd04735 OYE_like_4_FMN Old yel 92.7 2 4.4E-05 37.0 11.0 108 20-129 148-289 (353)
153 PRK12331 oxaloacetate decarbox 92.6 1.7 3.6E-05 39.3 10.7 102 20-131 100-204 (448)
154 cd04737 LOX_like_FMN L-Lactate 92.6 0.73 1.6E-05 40.3 8.3 73 17-103 230-306 (351)
155 cd03332 LMO_FMN L-Lactate 2-mo 92.6 0.79 1.7E-05 40.7 8.5 76 11-102 258-337 (383)
156 TIGR01949 AroFGH_arch predicte 92.6 0.94 2E-05 37.2 8.5 67 22-103 162-228 (258)
157 CHL00200 trpA tryptophan synth 92.6 1.1 2.3E-05 37.7 8.9 77 20-104 33-128 (263)
158 PRK10415 tRNA-dihydrouridine s 92.4 0.87 1.9E-05 38.9 8.4 70 20-102 153-224 (321)
159 PF00977 His_biosynth: Histidi 92.4 0.19 4.1E-06 40.8 4.1 106 16-128 82-195 (229)
160 cd02930 DCR_FMN 2,4-dienoyl-Co 92.3 0.84 1.8E-05 39.2 8.2 82 19-101 140-243 (353)
161 PRK04180 pyridoxal biosynthesi 92.3 0.24 5.3E-06 42.7 4.8 70 16-99 24-100 (293)
162 PRK07028 bifunctional hexulose 92.3 0.71 1.5E-05 40.6 7.8 95 19-129 121-218 (430)
163 PRK07226 fructose-bisphosphate 92.2 1.3 2.8E-05 36.6 8.9 87 22-123 166-252 (267)
164 PRK04302 triosephosphate isome 92.2 0.72 1.6E-05 37.1 7.2 73 43-124 40-112 (223)
165 PRK14114 1-(5-phosphoribosyl)- 92.1 2.1 4.6E-05 35.3 10.0 104 16-128 82-192 (241)
166 PRK09250 fructose-bisphosphate 92.1 1 2.2E-05 39.8 8.4 105 21-129 151-286 (348)
167 cd04730 NPD_like 2-Nitropropan 92.0 3.4 7.3E-05 32.7 10.8 85 20-129 71-161 (236)
168 PRK03512 thiamine-phosphate py 92.0 2.6 5.6E-05 34.0 10.2 96 10-121 103-205 (211)
169 cd04723 HisA_HisF Phosphoribos 92.0 1.8 4E-05 35.1 9.4 86 20-123 39-124 (233)
170 PRK08195 4-hyroxy-2-oxovalerat 92.0 3.6 7.8E-05 35.6 11.7 86 22-123 31-125 (337)
171 COG0167 PyrD Dihydroorotate de 91.9 0.92 2E-05 39.3 8.0 81 22-114 115-206 (310)
172 PRK10415 tRNA-dihydrouridine s 91.9 3.3 7.2E-05 35.4 11.3 110 11-128 68-198 (321)
173 PF01070 FMN_dh: FMN-dependent 91.9 0.73 1.6E-05 40.2 7.3 74 10-102 229-309 (356)
174 TIGR00343 pyridoxal 5'-phospha 91.8 0.96 2.1E-05 39.0 7.9 70 16-99 17-93 (287)
175 PLN02746 hydroxymethylglutaryl 91.7 2.6 5.7E-05 36.9 10.6 114 13-130 119-247 (347)
176 KOG0538|consensus 91.7 1.1 2.5E-05 39.4 8.3 84 15-112 230-322 (363)
177 TIGR02708 L_lactate_ox L-lacta 91.7 1.1 2.4E-05 39.6 8.3 77 11-103 233-313 (367)
178 cd04729 NanE N-acetylmannosami 91.7 5 0.00011 31.9 11.4 68 20-102 31-99 (219)
179 PRK10550 tRNA-dihydrouridine s 91.6 4.3 9.3E-05 34.7 11.7 110 10-128 65-198 (312)
180 PLN02803 beta-amylase 91.6 0.6 1.3E-05 43.4 6.8 74 58-135 84-168 (548)
181 PLN02591 tryptophan synthase 91.5 1.2 2.6E-05 37.2 8.0 69 21-103 146-219 (250)
182 smart00518 AP2Ec AP endonuclea 91.5 3.1 6.8E-05 33.5 10.3 80 20-101 14-103 (273)
183 PRK09997 hydroxypyruvate isome 91.5 6.4 0.00014 31.7 13.6 107 18-130 16-143 (258)
184 PRK04302 triosephosphate isome 91.4 1.5 3.3E-05 35.2 8.3 75 14-102 119-202 (223)
185 TIGR03217 4OH_2_O_val_ald 4-hy 91.4 3.2 6.9E-05 35.9 10.7 101 18-130 89-194 (333)
186 PRK11858 aksA trans-homoaconit 91.3 2.4 5.1E-05 37.1 9.9 110 12-130 68-194 (378)
187 cd04722 TIM_phosphate_binding 91.2 3.2 7E-05 30.4 9.3 96 18-122 14-112 (200)
188 PRK05692 hydroxymethylglutaryl 91.2 3.5 7.5E-05 34.8 10.5 111 12-130 75-205 (287)
189 PRK08195 4-hyroxy-2-oxovalerat 91.2 3.5 7.6E-05 35.6 10.8 102 17-130 89-195 (337)
190 cd04732 HisA HisA. Phosphorib 91.2 5.4 0.00012 31.5 11.2 89 19-124 32-121 (234)
191 cd04741 DHOD_1A_like Dihydroor 91.1 1.2 2.7E-05 37.4 7.8 64 29-101 119-192 (294)
192 cd07939 DRE_TIM_NifV Streptomy 91.1 2.1 4.6E-05 35.0 9.0 104 17-130 70-188 (259)
193 COG1082 IolE Sugar phosphate i 91.0 5.7 0.00012 31.6 11.2 101 17-123 15-136 (274)
194 PRK09140 2-dehydro-3-deoxy-6-p 90.9 2.1 4.5E-05 34.5 8.6 71 16-106 111-184 (206)
195 cd00377 ICL_PEPM Members of th 90.9 2.7 5.8E-05 34.6 9.3 100 22-130 90-202 (243)
196 TIGR00736 nifR3_rel_arch TIM-b 90.9 1.3 2.9E-05 36.6 7.6 71 17-102 149-220 (231)
197 TIGR02090 LEU1_arch isopropylm 90.8 2.5 5.4E-05 36.7 9.6 105 16-130 71-190 (363)
198 PF01487 DHquinase_I: Type I 3 90.8 2.2 4.8E-05 34.0 8.6 108 21-139 15-129 (224)
199 PLN02898 HMP-P kinase/thiamin- 90.6 3.1 6.8E-05 37.4 10.3 77 10-102 391-475 (502)
200 PRK09282 pyruvate carboxylase 90.4 1.4 3.1E-05 41.0 8.1 66 20-98 158-225 (592)
201 cd02811 IDI-2_FMN Isopentenyl- 90.4 2.5 5.5E-05 36.2 9.1 73 18-103 128-210 (326)
202 PRK09250 fructose-bisphosphate 90.4 1.5 3.4E-05 38.6 7.9 92 20-118 221-333 (348)
203 cd04740 DHOD_1B_like Dihydroor 90.3 1.7 3.6E-05 36.0 7.8 69 20-102 170-260 (296)
204 PRK05567 inosine 5'-monophosph 90.3 1.3 2.9E-05 39.8 7.7 77 14-104 275-362 (486)
205 PRK11815 tRNA-dihydrouridine s 90.3 1.9 4.2E-05 37.0 8.4 66 22-102 157-233 (333)
206 PRK11197 lldD L-lactate dehydr 90.3 1.7 3.7E-05 38.6 8.2 74 10-102 249-329 (381)
207 TIGR03217 4OH_2_O_val_ald 4-hy 90.3 7.3 0.00016 33.7 11.9 89 23-127 31-130 (333)
208 TIGR01037 pyrD_sub1_fam dihydr 90.2 1.5 3.2E-05 36.5 7.4 87 20-120 173-282 (300)
209 PRK12677 xylose isomerase; Pro 90.2 3.7 8E-05 36.2 10.2 104 20-123 35-167 (384)
210 PTZ00314 inosine-5'-monophosph 90.2 1.5 3.3E-05 39.9 8.0 74 15-104 289-375 (495)
211 PF01180 DHO_dh: Dihydroorotat 90.1 1.1 2.5E-05 37.2 6.7 80 11-100 100-194 (295)
212 cd02922 FCB2_FMN Flavocytochro 90.1 1.8 4E-05 37.7 8.1 74 10-102 217-300 (344)
213 cd02811 IDI-2_FMN Isopentenyl- 90.0 2.1 4.5E-05 36.7 8.3 76 11-103 183-285 (326)
214 cd00377 ICL_PEPM Members of th 89.8 1.3 2.9E-05 36.4 6.7 65 19-103 163-227 (243)
215 PRK13957 indole-3-glycerol-pho 89.8 3 6.4E-05 35.1 8.8 89 21-130 66-159 (247)
216 TIGR01036 pyrD_sub2 dihydrooro 89.7 1.3 2.8E-05 38.2 6.8 65 29-102 166-244 (335)
217 PRK10550 tRNA-dihydrouridine s 89.6 2.9 6.3E-05 35.8 8.9 71 19-102 151-224 (312)
218 cd04743 NPD_PKS 2-Nitropropane 89.6 2.7 5.8E-05 36.6 8.7 93 14-121 108-228 (320)
219 PRK08255 salicylyl-CoA 5-hydro 89.5 1.7 3.8E-05 41.1 8.1 79 20-101 555-657 (765)
220 cd02911 arch_FMN Archeal FMN-b 89.5 6.3 0.00014 32.2 10.5 99 10-119 75-189 (233)
221 cd03174 DRE_TIM_metallolyase D 89.5 9.4 0.0002 30.5 11.4 104 19-131 77-197 (265)
222 TIGR02660 nifV_homocitr homoci 89.5 3.4 7.4E-05 35.8 9.3 85 22-119 148-237 (365)
223 cd00381 IMPDH IMPDH: The catal 89.5 3.5 7.5E-05 35.4 9.2 94 17-128 94-201 (325)
224 TIGR01163 rpe ribulose-phospha 89.2 1.6 3.5E-05 33.7 6.5 75 14-103 111-194 (210)
225 TIGR01302 IMP_dehydrog inosine 89.2 2.3 5E-05 38.0 8.3 74 15-104 272-358 (450)
226 PRK13307 bifunctional formalde 89.1 3.7 8E-05 36.6 9.4 91 17-123 287-379 (391)
227 cd04733 OYE_like_2_FMN Old yel 89.0 1.7 3.8E-05 37.0 7.1 79 19-101 152-255 (338)
228 cd04722 TIM_phosphate_binding 88.9 4.2 9.1E-05 29.8 8.3 80 9-102 114-199 (200)
229 COG0106 HisA Phosphoribosylfor 88.9 11 0.00024 31.8 11.6 103 16-127 84-194 (241)
230 cd00958 DhnA Class I fructose- 88.9 4.6 9.9E-05 32.2 9.1 95 20-127 80-182 (235)
231 cd00405 PRAI Phosphoribosylant 88.9 4.2 9.2E-05 31.9 8.8 91 14-122 103-203 (203)
232 cd07938 DRE_TIM_HMGL 3-hydroxy 88.8 6.2 0.00013 33.0 10.1 106 16-130 73-199 (274)
233 COG1830 FbaB DhnA-type fructos 88.8 1.9 4.2E-05 36.7 7.1 69 20-103 170-238 (265)
234 PRK08649 inosine 5-monophospha 88.8 2 4.3E-05 37.9 7.4 73 16-104 195-287 (368)
235 TIGR01108 oadA oxaloacetate de 88.8 0.81 1.8E-05 42.6 5.2 47 20-68 153-201 (582)
236 PRK07094 biotin synthase; Prov 88.8 9.7 0.00021 31.8 11.3 93 20-131 77-185 (323)
237 PF00682 HMGL-like: HMGL-like 88.6 3.7 8.1E-05 32.6 8.4 108 15-131 62-188 (237)
238 PRK07807 inosine 5-monophospha 88.4 2.3 5E-05 38.7 7.8 79 12-104 269-361 (479)
239 PRK05286 dihydroorotate dehydr 88.4 3 6.6E-05 35.9 8.2 66 28-102 168-245 (344)
240 TIGR00222 panB 3-methyl-2-oxob 88.3 3.4 7.4E-05 35.1 8.3 86 22-122 98-194 (263)
241 PLN02705 beta-amylase 88.3 1.7 3.8E-05 41.2 7.0 72 59-134 246-328 (681)
242 PLN02334 ribulose-phosphate 3- 88.2 4.5 9.8E-05 32.5 8.7 93 10-121 116-221 (229)
243 PRK07315 fructose-bisphosphate 88.2 6.6 0.00014 33.5 10.0 103 18-132 88-210 (293)
244 cd01297 D-aminoacylase D-amino 88.1 1.8 3.9E-05 37.7 6.7 59 76-134 161-222 (415)
245 PRK14041 oxaloacetate decarbox 88.1 9.2 0.0002 34.8 11.4 100 22-131 101-203 (467)
246 cd00019 AP2Ec AP endonuclease 88.1 13 0.00028 30.2 12.3 109 21-131 15-143 (279)
247 PF04131 NanE: Putative N-acet 88.1 2.1 4.5E-05 35.0 6.6 85 22-123 5-89 (192)
248 COG3010 NanE Putative N-acetyl 88.1 1.9 4E-05 36.1 6.4 83 10-107 128-215 (229)
249 PLN02334 ribulose-phosphate 3- 87.9 4.1 8.9E-05 32.8 8.3 46 20-67 24-75 (229)
250 PRK09061 D-glutamate deacylase 87.9 1.8 3.9E-05 39.2 6.7 58 77-135 164-223 (509)
251 cd02932 OYE_YqiM_FMN Old yello 87.9 5.1 0.00011 34.0 9.2 77 20-101 158-260 (336)
252 cd02812 PcrB_like PcrB_like pr 87.8 3.9 8.6E-05 33.7 8.2 77 21-118 140-217 (219)
253 TIGR00262 trpA tryptophan synt 87.7 3.2 7E-05 34.5 7.7 68 21-102 155-227 (256)
254 cd07937 DRE_TIM_PC_TC_5S Pyruv 87.7 15 0.00032 30.6 12.3 104 18-131 93-199 (275)
255 PRK04169 geranylgeranylglycery 87.5 1.4 3.1E-05 36.5 5.5 62 43-121 167-230 (232)
256 PF03328 HpcH_HpaI: HpcH/HpaI 87.5 8.2 0.00018 30.6 9.7 96 11-123 3-107 (221)
257 PRK05437 isopentenyl pyrophosp 87.5 4.4 9.6E-05 35.2 8.7 76 11-103 191-291 (352)
258 PRK13587 1-(5-phosphoribosyl)- 87.5 6.5 0.00014 32.2 9.3 100 17-136 31-133 (234)
259 PRK14040 oxaloacetate decarbox 87.5 1.1 2.3E-05 41.9 5.2 66 20-98 159-226 (593)
260 COG1830 FbaB DhnA-type fructos 87.5 8.2 0.00018 33.0 10.1 100 13-128 97-206 (265)
261 PRK12290 thiE thiamine-phospha 87.4 7.3 0.00016 35.5 10.3 104 9-128 300-418 (437)
262 PRK08227 autoinducer 2 aldolas 87.3 4.6 0.0001 34.2 8.5 97 13-128 94-196 (264)
263 PRK07259 dihydroorotate dehydr 87.3 3.7 8E-05 34.2 7.9 69 20-102 173-263 (301)
264 PF07555 NAGidase: beta-N-acet 87.3 2.4 5.1E-05 36.6 6.9 48 56-107 66-114 (306)
265 PF03659 Glyco_hydro_71: Glyco 87.3 1.7 3.6E-05 38.5 6.1 60 74-137 12-71 (386)
266 TIGR03699 mena_SCO4550 menaqui 87.2 4.9 0.00011 34.1 8.7 97 22-134 81-204 (340)
267 TIGR00737 nifR3_yhdG putative 87.2 4.1 9E-05 34.4 8.2 70 20-102 151-222 (319)
268 PLN02905 beta-amylase 87.1 2.4 5.3E-05 40.4 7.3 73 59-135 264-347 (702)
269 PF01207 Dus: Dihydrouridine s 87.1 10 0.00022 32.2 10.5 114 9-130 55-189 (309)
270 cd07945 DRE_TIM_CMS Leptospira 87.1 4 8.8E-05 34.3 8.0 108 16-130 74-197 (280)
271 PRK06552 keto-hydroxyglutarate 87.0 3.9 8.5E-05 33.2 7.7 84 16-119 116-202 (213)
272 cd01320 ADA Adenosine deaminas 86.9 5.9 0.00013 32.9 8.9 106 20-133 77-195 (325)
273 TIGR01768 GGGP-family geranylg 86.8 1.6 3.4E-05 36.2 5.3 54 40-107 156-213 (223)
274 COG1794 RacX Aspartate racemas 86.7 3.5 7.7E-05 34.5 7.3 41 20-67 66-106 (230)
275 COG1533 SplB DNA repair photol 86.7 2 4.4E-05 36.8 6.1 83 18-108 131-225 (297)
276 TIGR01304 IMP_DH_rel_2 IMP deh 86.7 2.8 6.1E-05 37.0 7.1 70 16-103 196-285 (369)
277 PRK05437 isopentenyl pyrophosp 86.6 4.7 0.0001 35.0 8.4 74 17-103 135-218 (352)
278 TIGR00259 thylakoid_BtpA membr 86.6 12 0.00025 31.7 10.5 88 18-123 158-253 (257)
279 PLN02446 (5-phosphoribosyl)-5- 86.6 7.5 0.00016 33.0 9.4 105 20-128 95-211 (262)
280 TIGR00126 deoC deoxyribose-pho 86.5 4.1 8.8E-05 33.2 7.5 94 20-123 74-173 (211)
281 PLN02826 dihydroorotate dehydr 86.5 3.1 6.7E-05 37.2 7.3 78 16-102 203-296 (409)
282 COG0159 TrpA Tryptophan syntha 86.5 3.2 6.8E-05 35.4 7.0 75 20-102 35-129 (265)
283 PLN00197 beta-amylase; Provisi 86.5 1.8 4E-05 40.4 6.0 72 59-134 105-187 (573)
284 cd00429 RPE Ribulose-5-phospha 86.3 3.6 7.7E-05 31.7 6.8 70 18-103 116-195 (211)
285 TIGR00734 hisAF_rel hisA/hisF 86.2 4.1 9E-05 33.0 7.4 67 26-108 151-219 (221)
286 PLN02617 imidazole glycerol ph 86.2 7.1 0.00015 36.2 9.7 108 18-128 336-486 (538)
287 PRK00311 panB 3-methyl-2-oxobu 86.2 4.6 9.9E-05 34.1 7.9 88 22-122 99-195 (264)
288 cd04747 OYE_like_5_FMN Old yel 86.0 4.3 9.2E-05 35.6 7.8 82 20-101 148-254 (361)
289 cd06557 KPHMT-like Ketopantoat 86.0 4.5 9.8E-05 33.9 7.7 85 22-122 96-192 (254)
290 PRK01033 imidazole glycerol ph 85.8 15 0.00033 30.2 10.7 89 18-123 31-121 (258)
291 PRK09061 D-glutamate deacylase 85.8 20 0.00042 32.5 12.2 101 22-129 175-280 (509)
292 KOG1606|consensus 85.8 1.4 3E-05 37.4 4.5 57 16-75 28-91 (296)
293 PRK02227 hypothetical protein; 85.6 20 0.00043 30.2 11.3 83 12-104 3-89 (238)
294 PF04476 DUF556: Protein of un 85.6 13 0.00028 31.3 10.1 84 11-104 2-89 (235)
295 COG3010 NanE Putative N-acetyl 85.6 7.3 0.00016 32.6 8.5 87 21-123 38-124 (229)
296 TIGR01302 IMP_dehydrog inosine 85.5 6.7 0.00014 35.1 9.0 93 17-127 224-330 (450)
297 cd00959 DeoC 2-deoxyribose-5-p 85.5 5.2 0.00011 31.7 7.5 93 20-122 73-171 (203)
298 TIGR00433 bioB biotin syntheta 85.5 19 0.0004 29.5 11.1 99 19-133 68-180 (296)
299 PRK11840 bifunctional sulfur c 85.4 5.8 0.00013 34.8 8.3 91 12-120 201-295 (326)
300 PRK05692 hydroxymethylglutaryl 85.2 1.5 3.3E-05 37.0 4.6 88 20-120 159-258 (287)
301 PRK07107 inosine 5-monophospha 85.0 4.8 0.0001 36.9 7.9 80 12-105 285-384 (502)
302 cd07941 DRE_TIM_LeuA3 Desulfob 84.9 11 0.00023 31.4 9.4 97 22-129 26-137 (273)
303 PRK00311 panB 3-methyl-2-oxobu 84.9 22 0.00048 30.0 11.4 108 9-128 15-134 (264)
304 TIGR01305 GMP_reduct_1 guanosi 84.8 5 0.00011 35.4 7.7 80 12-105 151-244 (343)
305 COG0106 HisA Phosphoribosylfor 84.7 23 0.00049 29.9 11.2 88 19-123 34-122 (241)
306 TIGR00035 asp_race aspartate r 84.6 1.4 3E-05 35.5 3.9 68 41-109 7-89 (229)
307 PRK06256 biotin synthase; Vali 84.5 11 0.00024 31.7 9.5 66 22-105 100-172 (336)
308 PRK07998 gatY putative fructos 84.3 25 0.00055 30.0 11.9 103 17-132 85-207 (283)
309 PRK11858 aksA trans-homoaconit 84.1 9.4 0.0002 33.3 9.1 64 22-98 151-216 (378)
310 PRK06843 inosine 5-monophospha 84.0 11 0.00023 34.0 9.5 89 18-123 154-253 (404)
311 PRK13523 NADPH dehydrogenase N 83.8 3.3 7.2E-05 35.7 6.2 103 20-127 146-278 (337)
312 TIGR02631 xylA_Arthro xylose i 83.8 14 0.0003 32.6 10.1 85 17-101 33-134 (382)
313 CHL00200 trpA tryptophan synth 83.7 16 0.00035 30.6 10.1 18 86-103 215-232 (263)
314 cd07940 DRE_TIM_IPMS 2-isoprop 83.5 16 0.00035 30.0 9.9 105 17-130 70-195 (268)
315 TIGR03700 mena_SCO4494 putativ 83.5 12 0.00027 32.1 9.5 99 21-135 87-212 (351)
316 TIGR00742 yjbN tRNA dihydrouri 83.5 6.9 0.00015 33.6 7.9 66 22-102 147-223 (318)
317 COG0214 SNZ1 Pyridoxine biosyn 83.5 4.4 9.6E-05 34.7 6.5 69 16-98 27-102 (296)
318 cd01454 vWA_norD_type norD typ 83.4 13 0.00028 28.0 8.6 81 38-119 77-166 (174)
319 PRK12330 oxaloacetate decarbox 83.3 5.1 0.00011 36.9 7.4 101 20-131 101-207 (499)
320 PLN02801 beta-amylase 83.1 4.6 0.0001 37.4 7.0 74 57-134 13-97 (517)
321 PRK14042 pyruvate carboxylase 83.0 5 0.00011 37.7 7.3 100 21-131 101-204 (596)
322 PRK07360 FO synthase subunit 2 83.0 13 0.00028 32.3 9.5 65 20-100 98-178 (371)
323 cd00959 DeoC 2-deoxyribose-5-p 82.9 3.2 7E-05 32.9 5.3 52 10-62 121-177 (203)
324 cd02801 DUS_like_FMN Dihydrour 82.8 6.9 0.00015 30.7 7.2 69 20-102 142-213 (231)
325 PRK13576 3-dehydroquinate dehy 82.6 25 0.00054 28.8 13.0 109 10-122 5-128 (216)
326 cd04723 HisA_HisF Phosphoribos 82.6 24 0.00053 28.5 10.5 104 16-129 87-194 (233)
327 PRK12581 oxaloacetate decarbox 82.5 2.5 5.5E-05 38.6 5.1 66 20-98 167-234 (468)
328 PRK06806 fructose-bisphosphate 82.5 29 0.00063 29.4 12.1 102 17-131 85-207 (281)
329 TIGR01306 GMP_reduct_2 guanosi 82.4 10 0.00022 33.1 8.5 73 17-105 146-230 (321)
330 TIGR03128 RuMP_HxlA 3-hexulose 82.2 17 0.00037 28.2 9.1 86 19-119 116-203 (206)
331 cd07939 DRE_TIM_NifV Streptomy 82.0 14 0.0003 30.2 8.9 41 82-124 110-150 (259)
332 PRK09195 gatY tagatose-bisphos 81.9 5.8 0.00013 33.9 6.8 100 14-126 23-128 (284)
333 COG0269 SgbH 3-hexulose-6-phos 81.8 9.6 0.00021 31.7 7.8 91 15-122 115-212 (217)
334 TIGR00587 nfo apurinic endonuc 81.7 15 0.00032 30.3 9.0 81 20-101 15-107 (274)
335 PRK09389 (R)-citramalate synth 81.7 14 0.0003 33.7 9.5 64 21-97 148-213 (488)
336 PRK08649 inosine 5-monophospha 81.7 7.7 0.00017 34.2 7.7 71 18-103 143-216 (368)
337 TIGR01304 IMP_DH_rel_2 IMP deh 81.5 9.1 0.0002 33.9 8.1 68 19-102 145-216 (369)
338 PRK13586 1-(5-phosphoribosyl)- 81.5 28 0.0006 28.5 10.9 95 17-129 30-126 (232)
339 PRK12581 oxaloacetate decarbox 81.5 5.6 0.00012 36.4 6.9 97 22-131 111-213 (468)
340 TIGR01108 oadA oxaloacetate de 81.4 24 0.00052 33.0 11.1 96 22-129 27-136 (582)
341 PRK06806 fructose-bisphosphate 81.4 12 0.00025 31.8 8.4 77 12-102 148-230 (281)
342 PF14307 Glyco_tran_WbsX: Glyc 81.4 1.2 2.5E-05 38.3 2.4 55 75-130 51-108 (345)
343 PRK11320 prpB 2-methylisocitra 81.3 33 0.00072 29.4 11.2 98 22-130 99-208 (292)
344 TIGR01093 aroD 3-dehydroquinat 81.1 27 0.00059 28.1 13.4 117 14-138 6-133 (228)
345 PRK12331 oxaloacetate decarbox 81.0 18 0.00039 32.7 9.9 90 23-123 33-133 (448)
346 TIGR02090 LEU1_arch isopropylm 81.0 16 0.00034 31.8 9.3 45 22-68 147-193 (363)
347 cd02911 arch_FMN Archeal FMN-b 81.0 11 0.00024 30.8 8.0 69 17-103 153-221 (233)
348 PLN02520 bifunctional 3-dehydr 81.0 17 0.00038 33.2 10.0 118 9-138 24-150 (529)
349 PLN02161 beta-amylase 80.9 6.7 0.00015 36.5 7.2 77 59-135 91-178 (531)
350 cd06556 ICL_KPHMT Members of t 80.8 31 0.00067 28.6 11.0 95 20-129 93-196 (240)
351 PF03437 BtpA: BtpA family; I 80.6 33 0.00073 28.9 11.0 107 17-128 91-204 (254)
352 PRK05985 cytosine deaminase; P 80.6 9.8 0.00021 32.5 7.8 103 20-131 102-211 (391)
353 TIGR02814 pfaD_fam PfaD family 80.6 4.3 9.3E-05 36.9 5.8 104 18-136 170-289 (444)
354 cd02931 ER_like_FMN Enoate red 80.4 8.4 0.00018 33.7 7.4 83 19-102 153-272 (382)
355 cd07941 DRE_TIM_LeuA3 Desulfob 80.4 23 0.0005 29.4 9.7 106 18-130 80-201 (273)
356 PF02548 Pantoate_transf: Keto 80.2 20 0.00043 30.5 9.4 76 24-106 102-186 (261)
357 PF02449 Glyco_hydro_42: Beta- 80.1 2.4 5.3E-05 36.4 4.0 48 82-129 10-65 (374)
358 PRK10128 2-keto-3-deoxy-L-rham 80.1 9.3 0.0002 32.2 7.4 89 14-123 24-113 (267)
359 PRK09517 multifunctional thiam 80.1 19 0.00041 34.4 10.2 95 9-122 101-214 (755)
360 PRK02506 dihydroorotate dehydr 79.9 5.8 0.00013 33.7 6.2 80 13-101 98-190 (310)
361 PRK05283 deoxyribose-phosphate 79.9 4.4 9.5E-05 34.3 5.3 94 7-103 133-235 (257)
362 TIGR01235 pyruv_carbox pyruvat 79.8 8.4 0.00018 38.8 8.0 66 21-99 694-761 (1143)
363 TIGR02151 IPP_isom_2 isopenten 79.7 8.1 0.00018 33.2 7.0 69 17-102 191-283 (333)
364 KOG3008|consensus 79.6 4 8.6E-05 34.9 4.9 53 10-68 198-250 (300)
365 PRK08005 epimerase; Validated 79.6 13 0.00027 30.4 7.8 86 20-105 17-117 (210)
366 PRK09485 mmuM homocysteine met 79.6 37 0.0008 28.7 11.4 115 15-135 41-192 (304)
367 TIGR01303 IMP_DH_rel_1 IMP deh 79.4 14 0.0003 33.7 8.7 80 12-105 267-360 (475)
368 PRK00915 2-isopropylmalate syn 79.4 14 0.00031 33.7 8.8 68 22-102 155-231 (513)
369 TIGR00250 RNAse_H_YqgF RNAse H 79.2 6.8 0.00015 29.4 5.7 40 90-130 43-89 (130)
370 PRK07315 fructose-bisphosphate 79.0 14 0.00031 31.4 8.3 74 16-103 153-233 (293)
371 PF13714 PEP_mutase: Phosphoen 78.9 5.8 0.00013 32.8 5.7 63 19-103 158-220 (238)
372 PRK14042 pyruvate carboxylase 78.4 3.9 8.5E-05 38.4 5.0 66 20-98 158-225 (596)
373 TIGR02660 nifV_homocitr homoci 78.3 15 0.00034 31.8 8.4 94 23-123 30-152 (365)
374 COG1304 idi Isopentenyl diphos 78.1 3.8 8.2E-05 36.1 4.6 82 7-102 217-302 (360)
375 TIGR01859 fruc_bis_ald_ fructo 78.0 19 0.00041 30.5 8.6 77 14-103 150-231 (282)
376 cd07938 DRE_TIM_HMGL 3-hydroxy 78.0 5.1 0.00011 33.5 5.1 87 21-120 154-252 (274)
377 PRK06801 hypothetical protein; 77.9 14 0.00031 31.4 7.9 75 14-102 153-233 (286)
378 PF01902 ATP_bind_4: ATP-bindi 77.9 0.92 2E-05 37.2 0.7 78 19-107 14-97 (218)
379 COG0107 HisF Imidazoleglycerol 77.8 18 0.00039 30.8 8.3 103 16-123 83-199 (256)
380 PRK14114 1-(5-phosphoribosyl)- 77.8 18 0.0004 29.8 8.3 84 19-117 147-238 (241)
381 cd04738 DHOD_2_like Dihydrooro 77.6 7.1 0.00015 33.3 6.0 65 28-101 159-235 (327)
382 PRK12344 putative alpha-isopro 77.5 19 0.00041 33.1 9.1 45 22-68 164-210 (524)
383 TIGR02311 HpaI 2,4-dihydroxyhe 77.5 11 0.00025 31.0 7.0 88 15-123 19-107 (249)
384 TIGR02151 IPP_isom_2 isopenten 77.3 23 0.0005 30.4 9.1 64 27-103 139-211 (333)
385 cd01293 Bact_CD Bacterial cyto 77.3 26 0.00056 29.2 9.2 100 20-132 100-210 (398)
386 TIGR02317 prpB methylisocitrat 77.2 45 0.00098 28.4 11.4 99 21-130 93-203 (285)
387 PRK08564 5'-methylthioadenosin 77.2 1.5 3.3E-05 36.9 1.8 69 59-130 50-123 (267)
388 PF00218 IGPS: Indole-3-glycer 77.0 14 0.0003 31.1 7.5 85 21-126 73-160 (254)
389 PRK00109 Holliday junction res 76.8 9.1 0.0002 29.0 5.8 41 89-130 48-95 (138)
390 TIGR01919 hisA-trpF 1-(5-phosp 76.7 26 0.00056 28.9 8.9 81 20-115 153-238 (243)
391 PRK13398 3-deoxy-7-phosphohept 76.6 27 0.00059 29.3 9.2 95 18-123 146-260 (266)
392 PRK12858 tagatose 1,6-diphosph 76.6 19 0.00042 31.4 8.5 76 20-98 110-202 (340)
393 PRK13111 trpA tryptophan synth 76.6 16 0.00034 30.6 7.7 75 14-103 148-229 (258)
394 cd07943 DRE_TIM_HOA 4-hydroxy- 76.4 6.3 0.00014 32.3 5.2 87 22-121 147-239 (263)
395 TIGR00423 radical SAM domain p 76.3 34 0.00074 28.7 9.7 98 22-135 45-169 (309)
396 PF00290 Trp_syntA: Tryptophan 76.2 2.9 6.3E-05 35.2 3.2 76 18-101 26-121 (259)
397 PRK08745 ribulose-phosphate 3- 76.1 18 0.00039 29.7 7.8 86 20-105 20-121 (223)
398 COG0119 LeuA Isopropylmalate/h 76.1 24 0.00052 31.6 9.1 84 20-116 150-240 (409)
399 PRK05567 inosine 5'-monophosph 75.9 43 0.00093 30.2 10.8 88 18-123 229-328 (486)
400 COG0042 tRNA-dihydrouridine sy 75.8 51 0.0011 28.4 11.3 115 8-130 67-204 (323)
401 TIGR01588 citE citrate lyase, 75.4 32 0.00069 28.9 9.3 96 11-119 6-107 (288)
402 cd00564 TMP_TenI Thiamine mono 75.4 31 0.00068 25.7 10.1 101 19-121 15-148 (196)
403 PF10566 Glyco_hydro_97: Glyco 75.3 2.8 6.1E-05 35.7 2.9 106 25-133 41-159 (273)
404 PF00977 His_biosynth: Histidi 75.3 16 0.00034 29.6 7.2 70 19-103 150-221 (229)
405 cd07948 DRE_TIM_HCS Saccharomy 74.6 8 0.00017 32.2 5.4 86 22-120 147-237 (262)
406 PRK12857 fructose-1,6-bisphosp 74.5 14 0.00031 31.5 7.0 101 14-127 23-129 (284)
407 PRK12738 kbaY tagatose-bisphos 74.3 25 0.00054 30.1 8.4 103 12-127 21-129 (286)
408 COG2102 Predicted ATPases of P 74.3 24 0.00053 29.5 8.1 96 17-123 12-112 (223)
409 cd06557 KPHMT-like Ketopantoat 74.2 52 0.0011 27.6 12.3 110 9-130 12-133 (254)
410 PRK14041 oxaloacetate decarbox 74.1 49 0.0011 30.2 10.7 89 23-123 32-132 (467)
411 PF01207 Dus: Dihydrouridine s 73.6 8.2 0.00018 32.7 5.4 71 19-102 141-213 (309)
412 TIGR02129 hisA_euk phosphoribo 73.6 29 0.00063 29.3 8.6 103 20-128 88-205 (253)
413 TIGR01182 eda Entner-Doudoroff 73.6 20 0.00043 29.2 7.4 69 16-103 108-177 (204)
414 PLN03228 methylthioalkylmalate 73.1 5.4 0.00012 36.7 4.4 35 22-58 245-281 (503)
415 TIGR00259 thylakoid_BtpA membr 73.0 57 0.0012 27.6 10.4 107 17-128 90-204 (257)
416 PRK12999 pyruvate carboxylase; 72.8 6.5 0.00014 39.5 5.1 67 20-99 695-763 (1146)
417 PRK07107 inosine 5-monophospha 72.7 12 0.00027 34.2 6.6 69 19-102 244-312 (502)
418 cd02933 OYE_like_FMN Old yello 72.6 44 0.00095 28.8 9.7 104 19-128 155-289 (338)
419 PRK09240 thiH thiamine biosynt 72.6 32 0.0007 29.9 8.9 67 21-107 112-185 (371)
420 TIGR01858 tag_bisphos_ald clas 72.5 16 0.00034 31.2 6.8 100 14-126 21-126 (282)
421 PRK07823 5'-methylthioadenosin 72.3 3.3 7.2E-05 35.0 2.7 67 59-130 47-120 (264)
422 cd01294 DHOase Dihydroorotase 72.2 58 0.0013 27.4 10.9 99 20-131 21-133 (335)
423 cd00516 PRTase_typeII Phosphor 72.2 19 0.00041 29.6 7.1 90 10-111 185-277 (281)
424 TIGR03239 GarL 2-dehydro-3-deo 72.0 23 0.0005 29.4 7.5 88 15-123 19-107 (249)
425 COG0413 PanB Ketopantoate hydr 71.9 45 0.00097 28.7 9.3 69 28-105 106-184 (268)
426 PF01630 Glyco_hydro_56: Hyalu 71.8 3.8 8.3E-05 36.0 3.0 56 60-121 261-320 (337)
427 PRK08599 coproporphyrinogen II 71.7 64 0.0014 27.7 11.5 73 39-123 55-146 (377)
428 TIGR01859 fruc_bis_ald_ fructo 71.6 61 0.0013 27.4 12.5 100 18-131 86-207 (282)
429 PRK12737 gatY tagatose-bisphos 71.4 18 0.00039 30.9 6.9 99 15-126 24-128 (284)
430 cd04724 Tryptophan_synthase_al 71.4 25 0.00055 28.7 7.6 16 86-102 200-215 (242)
431 PRK10200 putative racemase; Pr 71.1 25 0.00055 28.5 7.5 40 20-66 66-105 (230)
432 PRK08883 ribulose-phosphate 3- 70.8 30 0.00066 28.1 7.9 83 20-102 16-114 (220)
433 cd00947 TBP_aldolase_IIB Tagat 70.8 20 0.00043 30.5 7.0 100 14-126 18-123 (276)
434 PRK10200 putative racemase; Pr 70.8 10 0.00022 30.9 5.1 68 41-109 7-89 (230)
435 cd04738 DHOD_2_like Dihydrooro 70.5 16 0.00034 31.2 6.4 68 21-102 221-309 (327)
436 cd04737 LOX_like_FMN L-Lactate 70.2 29 0.00063 30.4 8.1 67 47-128 209-280 (351)
437 cd04742 NPD_FabD 2-Nitropropan 70.2 24 0.00053 31.8 7.8 103 18-137 165-285 (418)
438 PRK13813 orotidine 5'-phosphat 70.2 40 0.00087 26.4 8.3 73 23-103 74-147 (215)
439 PRK00043 thiE thiamine-phospha 70.1 22 0.00048 27.3 6.7 103 20-127 25-163 (212)
440 PRK11070 ssDNA exonuclease Rec 69.9 29 0.00064 32.4 8.5 91 24-129 64-156 (575)
441 TIGR02803 ExbD_1 TonB system t 69.8 15 0.00032 26.7 5.4 61 60-124 48-110 (122)
442 COG2513 PrpB PEP phosphonomuta 69.8 74 0.0016 27.6 11.2 106 10-123 19-143 (289)
443 TIGR00973 leuA_bact 2-isopropy 69.7 36 0.00079 31.0 8.9 36 21-58 151-188 (494)
444 TIGR01224 hutI imidazoloneprop 69.6 67 0.0014 27.0 12.6 107 20-132 99-218 (377)
445 TIGR00067 glut_race glutamate 69.6 47 0.001 27.4 8.9 80 20-124 51-131 (251)
446 PRK05458 guanosine 5'-monophos 69.4 15 0.00032 32.1 6.0 69 17-102 97-168 (326)
447 PRK09057 coproporphyrinogen II 69.2 37 0.00081 29.4 8.5 85 37-133 57-162 (380)
448 PF13407 Peripla_BP_4: Peripla 68.9 10 0.00022 29.4 4.6 45 81-129 41-85 (257)
449 PRK10558 alpha-dehydro-beta-de 68.8 30 0.00065 28.8 7.6 88 15-123 26-114 (256)
450 PRK06801 hypothetical protein; 68.7 74 0.0016 27.1 12.0 103 17-132 85-211 (286)
451 PRK14847 hypothetical protein; 68.7 47 0.001 29.2 9.0 77 11-100 173-270 (333)
452 PRK07455 keto-hydroxyglutarate 68.7 11 0.00024 29.8 4.8 80 8-107 12-96 (187)
453 PLN02746 hydroxymethylglutaryl 68.7 11 0.00023 33.2 5.1 45 21-67 202-249 (347)
454 KOG3379|consensus 68.6 6 0.00013 31.1 3.1 19 60-78 96-115 (150)
455 PRK07028 bifunctional hexulose 68.5 54 0.0012 28.9 9.5 27 9-35 3-35 (430)
456 TIGR01361 DAHP_synth_Bsub phos 68.4 69 0.0015 26.7 10.5 98 18-123 144-258 (260)
457 PF04481 DUF561: Protein of un 68.0 23 0.00051 29.9 6.7 80 11-99 61-149 (242)
458 PF00682 HMGL-like: HMGL-like 67.7 26 0.00056 27.8 6.8 88 20-120 141-234 (237)
459 TIGR02801 tolR TolR protein. T 67.6 22 0.00048 25.9 5.9 62 60-125 50-119 (129)
460 cd07940 DRE_TIM_IPMS 2-isoprop 67.4 68 0.0015 26.3 10.1 89 22-123 149-245 (268)
461 PRK05628 coproporphyrinogen II 67.3 73 0.0016 27.4 9.9 85 37-133 61-167 (375)
462 TIGR00977 LeuA_rel 2-isopropyl 67.3 11 0.00024 34.7 5.1 65 20-97 158-225 (526)
463 PF01081 Aldolase: KDPG and KH 67.1 23 0.0005 28.6 6.4 70 16-103 108-177 (196)
464 cd06301 PBP1_rhizopine_binding 67.1 13 0.00028 28.9 4.8 62 61-134 30-92 (272)
465 COG5564 Predicted TIM-barrel e 66.8 6.2 0.00013 33.6 3.1 78 14-100 161-250 (276)
466 PRK09282 pyruvate carboxylase 66.7 63 0.0014 30.3 10.0 91 22-123 32-133 (592)
467 PRK14040 oxaloacetate decarbox 66.6 77 0.0017 29.8 10.5 89 24-123 35-134 (593)
468 PRK13396 3-deoxy-7-phosphohept 66.5 68 0.0015 28.4 9.6 99 18-124 220-336 (352)
469 TIGR00126 deoC deoxyribose-pho 66.4 16 0.00035 29.7 5.4 69 9-85 121-194 (211)
470 cd02808 GltS_FMN Glutamate syn 66.4 34 0.00073 30.2 7.8 77 12-102 220-314 (392)
471 PRK09358 adenosine deaminase; 65.9 80 0.0017 26.5 11.8 105 20-132 85-203 (340)
472 PLN02303 urease 65.9 42 0.0009 33.1 8.8 72 46-130 442-516 (837)
473 PRK05904 coproporphyrinogen II 65.6 75 0.0016 27.5 9.7 85 37-133 58-162 (353)
474 PF05706 CDKN3: Cyclin-depende 65.4 2.1 4.6E-05 34.2 0.1 47 82-130 58-104 (168)
475 COG0042 tRNA-dihydrouridine sy 65.2 21 0.00045 30.7 6.2 71 19-102 155-228 (323)
476 PRK09722 allulose-6-phosphate 65.2 51 0.0011 27.2 8.2 86 20-106 19-120 (229)
477 cd08210 RLP_RrRLP Ribulose bis 65.0 67 0.0015 28.3 9.4 102 21-136 146-255 (364)
478 smart00642 Aamy Alpha-amylase 65.0 36 0.00077 26.3 6.9 58 81-138 18-97 (166)
479 cd00408 DHDPS-like Dihydrodipi 64.7 30 0.00064 28.3 6.7 90 19-123 82-174 (281)
480 cd07015 Clp_protease_NfeD Nodu 64.6 14 0.0003 29.2 4.6 65 24-91 24-88 (172)
481 cd07945 DRE_TIM_CMS Leptospira 64.6 85 0.0018 26.4 10.6 85 22-119 153-243 (280)
482 cd06808 PLPDE_III Type III Pyr 64.5 27 0.00059 26.5 6.2 78 11-89 38-137 (211)
483 TIGR02317 prpB methylisocitrat 64.3 91 0.002 26.6 11.7 86 8-101 12-107 (285)
484 PF13714 PEP_mutase: Phosphoen 64.2 82 0.0018 26.0 9.4 87 9-102 9-105 (238)
485 PRK05835 fructose-bisphosphate 63.9 35 0.00075 29.6 7.2 101 14-127 22-129 (307)
486 PRK12999 pyruvate carboxylase; 63.8 56 0.0012 33.1 9.6 100 22-131 633-741 (1146)
487 PRK05286 dihydroorotate dehydr 63.7 12 0.00026 32.2 4.4 69 20-102 229-318 (344)
488 PRK00230 orotidine 5'-phosphat 63.5 12 0.00026 30.4 4.2 73 42-121 150-226 (230)
489 PRK06846 putative deaminase; V 63.5 73 0.0016 27.6 9.2 94 20-128 179-284 (410)
490 cd04736 MDH_FMN Mandelate dehy 63.3 54 0.0012 29.0 8.5 69 44-129 221-294 (361)
491 cd00947 TBP_aldolase_IIB Tagat 63.3 41 0.0009 28.6 7.5 104 17-133 80-205 (276)
492 TIGR02320 PEP_mutase phosphoen 63.3 94 0.002 26.4 12.8 104 19-130 95-217 (285)
493 PF00834 Ribul_P_3_epim: Ribul 63.1 49 0.0011 26.6 7.6 49 20-68 16-68 (201)
494 cd02922 FCB2_FMN Flavocytochro 63.0 75 0.0016 27.7 9.2 42 46-102 200-241 (344)
495 PRK05718 keto-hydroxyglutarate 63.0 37 0.00079 27.6 6.9 70 15-102 114-183 (212)
496 COG0458 CarB Carbamoylphosphat 63.0 12 0.00027 33.7 4.4 71 11-88 100-182 (400)
497 PF01791 DeoC: DeoC/LacD famil 62.8 13 0.00027 29.9 4.2 102 19-122 79-188 (236)
498 PRK15108 biotin synthase; Prov 62.7 15 0.00032 31.8 4.8 23 21-47 84-106 (345)
499 PRK13125 trpA tryptophan synth 62.6 7.5 0.00016 31.7 2.8 17 86-102 198-214 (244)
500 PRK09234 fbiC FO synthase; Rev 62.4 39 0.00083 33.1 8.0 63 21-99 565-642 (843)
No 1
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=100.00 E-value=4.9e-60 Score=391.46 Aligned_cols=131 Identities=40% Similarity=0.667 Sum_probs=129.3
Q ss_pred ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930 10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH 89 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~ 89 (146)
.+||||++|++++.+|+++||||||||++|++||||||+|+++.+++.++|||+||||| |+|||+||++|+++|++||+
T Consensus 2 ~~lEvcv~s~~~a~~A~~~GAdRiELc~~L~~GGlTPS~g~i~~~~~~~~ipv~vMIRP-R~gdF~Ys~~E~~~M~~di~ 80 (248)
T PRK11572 2 ALLEICCYSMECALTAQQAGADRIELCAAPKEGGLTPSLGVLKSVRERVTIPVHPIIRP-RGGDFCYSDGEFAAMLEDIA 80 (248)
T ss_pred ceEEEEECCHHHHHHHHHcCCCEEEEccCcCCCCcCCCHHHHHHHHHhcCCCeEEEEec-CCCCCCCCHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEEeecccCCCCccc
Q psy7930 90 QFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHRAFDVVREPNE 141 (146)
Q Consensus 90 ~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtFHRAFD~~~d~~~ 141 (146)
.++++|+||||||+||+||+||.+++++|+++|+++++|||||||.++||.+
T Consensus 81 ~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~ 132 (248)
T PRK11572 81 TVRELGFPGLVTGVLDVDGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLN 132 (248)
T ss_pred HHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhcCCceEEechhhccCCHHH
Confidence 9999999999999999999999999999999999999999999999999986
No 2
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=100.00 E-value=2.7e-60 Score=382.62 Aligned_cols=131 Identities=56% Similarity=0.850 Sum_probs=112.8
Q ss_pred ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930 10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH 89 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~ 89 (146)
+++|||++|++++++|+++||||||||++|++||||||+++++++++..++||+||||| |+|||+||++|+++|++||+
T Consensus 1 M~lEvcv~s~~~a~~A~~~GAdRiELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRp-r~gdF~Ys~~E~~~M~~dI~ 79 (201)
T PF03932_consen 1 MILEVCVESLEDALAAEAGGADRIELCSNLEVGGLTPSLGLIRQAREAVDIPVHVMIRP-RGGDFVYSDEEIEIMKEDIR 79 (201)
T ss_dssp -EEEEEESSHHHHHHHHHTT-SEEEEEBTGGGT-B---HHHHHHHHHHTTSEEEEE--S-SSS-S---HHHHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHcCCCEEEECCCccCCCcCcCHHHHHHHHhhcCCceEEEECC-CCCCccCCHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEEeecccCCCCccc
Q psy7930 90 QFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHRAFDVVREPNE 141 (146)
Q Consensus 90 ~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtFHRAFD~~~d~~~ 141 (146)
.++++|+||||||+||+||+||.+++++|+++|+|+++|||||||.++||.+
T Consensus 80 ~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~ 131 (201)
T PF03932_consen 80 MLRELGADGFVFGALTEDGEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEE 131 (201)
T ss_dssp HHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHH
T ss_pred HHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHH
Confidence 9999999999999999999999999999999999999999999999999876
No 3
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-59 Score=384.24 Aligned_cols=133 Identities=47% Similarity=0.727 Sum_probs=130.3
Q ss_pred cceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930 9 KTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDC 88 (146)
Q Consensus 9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI 88 (146)
++++|||++|++++.+|+++||||||||++|++||||||+|+++++++..+||+++|||| |+|||+||+.|+++|++||
T Consensus 1 ~~~lEvCven~~~l~~A~~~GAdRiELC~~La~GG~TPSyG~~k~a~~~~~ipv~~MIRP-RgGdFvY~~~E~~iM~~DI 79 (241)
T COG3142 1 MMILEVCVENVEGLLAAQAAGADRIELCDALAEGGLTPSYGVIKEAVELSKIPVYVMIRP-RGGDFVYSDDELEIMLEDI 79 (241)
T ss_pred CceeeeeccCHhhHHHHHHcCCceeehhhccccCCCCCCHHHHHHHHhhcCCceEEEEec-CCCCcccChHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEEeecccCCCCcccc
Q psy7930 89 HQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHRAFDVVREPNEK 142 (146)
Q Consensus 89 ~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtFHRAFD~~~d~~~~ 142 (146)
+.++++|++|||||+||+||+||.+++++|+++|+|+++|||||||.++||.++
T Consensus 80 ~~~~~lG~~GVV~G~lt~dg~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~a 133 (241)
T COG3142 80 RLARELGVQGVVLGALTADGNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEA 133 (241)
T ss_pred HHHHHcCCCcEEEeeecCCCccCHHHHHHHHHHccCCceeeehhhhhcCCHHHH
Confidence 999999999999999999999999999999999999999999999999998753
No 4
>KOG4013|consensus
Probab=100.00 E-value=8.7e-57 Score=364.06 Aligned_cols=133 Identities=44% Similarity=0.699 Sum_probs=129.8
Q ss_pred ccceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHH
Q psy7930 8 NKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALD 87 (146)
Q Consensus 8 ~~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~d 87 (146)
..+++||||+|++||.+|+++||||||||++|.+||||||.|+++.+++...||+++|||| |+|||+||++|+++|++|
T Consensus 8 ~~iKlEvCvDs~eSA~nAe~GGAdRiElCSaL~eGGlTPSvG~l~~~k~~~~iP~ycMiRp-R~GDFvYsd~Em~a~~~D 86 (255)
T KOG4013|consen 8 KQIKLEVCVDSLESAENAEAGGADRIELCSALQEGGLTPSVGFLSILKYKYPIPLYCMIRP-RAGDFVYSDDEMAANMED 86 (255)
T ss_pred cceeeeeehhhHHHHHhHhhcCccHhHHhhhhccCCCCCcchhhhhhhcccccceEEEEec-CCCCcccchHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEEeecccCCCCccc
Q psy7930 88 CHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHRAFDVVREPNE 141 (146)
Q Consensus 88 I~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtFHRAFD~~~d~~~ 141 (146)
++.+|+.||||||||+||+||+||++.|..+++.|+|+|||||||||.+.||..
T Consensus 87 v~llk~~GAdGfVFGaLt~dgsid~~~C~si~~~~rplPVTFHRAfD~~~D~k~ 140 (255)
T KOG4013|consen 87 VELLKKAGADGFVFGALTSDGSIDRTSCQSIIETARPLPVTFHRAFDVAYDWKT 140 (255)
T ss_pred HHHHHHcCCCceEEeecCCCCCcCHHHHHHHHHhcCCCceeeeeehhhhcCHHH
Confidence 999999999999999999999999999999999999999999999999998864
No 5
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=98.27 E-value=9e-06 Score=63.36 Aligned_cols=71 Identities=20% Similarity=0.217 Sum_probs=56.8
Q ss_pred CHHHHHHHHHcCCCEEEe--cCCCCCCCCCCCHHHHHHHHhhCCCc--EEEEEccCCCCCcccCHHHHHHHHHHHHHHHH
Q psy7930 18 SVASALAAVRGGADRLEL--CAALSEGGLTPTLGLYRVIKRLVLVP--VFVMIRVRAGFDFVFSQAEKEIMALDCHQFVE 93 (146)
Q Consensus 18 s~~~a~~A~~~GAdRIEL--c~~l~~GGlTPS~g~i~~~~~~~~ip--v~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~ 93 (146)
..+.+..+.++|||+||| |++....+++++...++++++..+.| +++|+++ .. +-++.+++
T Consensus 13 ~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~---------~~------~~~~~~~~ 77 (210)
T TIGR01163 13 LGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVEN---------PD------RYIEDFAE 77 (210)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCC---------HH------HHHHHHHH
Confidence 457888899999999999 67778889999999999999877778 6788886 11 22677778
Q ss_pred cCCCEEEEee
Q psy7930 94 SGADGFVIGA 103 (146)
Q Consensus 94 ~GadG~VfG~ 103 (146)
.|+||+++-.
T Consensus 78 ~gadgv~vh~ 87 (210)
T TIGR01163 78 AGADIITVHP 87 (210)
T ss_pred cCCCEEEEcc
Confidence 8888877743
No 6
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.55 E-value=0.00066 Score=57.52 Aligned_cols=75 Identities=28% Similarity=0.277 Sum_probs=62.5
Q ss_pred cceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC--CCcEEEE--EccCCCCCcccCHHHHHHH
Q psy7930 9 KTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV--LVPVFVM--IRVRAGFDFVFSQAEKEIM 84 (146)
Q Consensus 9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~--~ipv~vM--IRP~R~gdF~Ys~~E~~~M 84 (146)
..++||-++|.+++..|.+.|||.|=| + ..|...++++.+.. ++|+.+. |.+
T Consensus 189 ~~~I~VEv~tleea~eA~~~gaD~I~L-D-------~~~~e~l~~~v~~~~~~i~leAsGGIt~---------------- 244 (277)
T PRK05742 189 GKPVEVEVESLDELRQALAAGADIVML-D-------ELSLDDMREAVRLTAGRAKLEASGGINE---------------- 244 (277)
T ss_pred CCeEEEEeCCHHHHHHHHHcCCCEEEE-C-------CCCHHHHHHHHHHhCCCCcEEEECCCCH----------------
Confidence 356999999999999999999999955 5 34778899888766 6777765 444
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCC
Q psy7930 85 ALDCHQFVESGADGFVIGALTGEQ 108 (146)
Q Consensus 85 ~~dI~~~~~~GadG~VfG~L~~dg 108 (146)
+.+..+.+.|+|+|++|.|+.+-
T Consensus 245 -~ni~~~a~tGvD~Isvg~lt~s~ 267 (277)
T PRK05742 245 -STLRVIAETGVDYISIGAMTKDV 267 (277)
T ss_pred -HHHHHHHHcCCCEEEEChhhcCC
Confidence 77889999999999999999763
No 7
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=97.29 E-value=0.0018 Score=54.30 Aligned_cols=81 Identities=27% Similarity=0.302 Sum_probs=61.9
Q ss_pred cceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC--CcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930 9 KTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL--VPVFVMIRVRAGFDFVFSQAEKEIMAL 86 (146)
Q Consensus 9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~--ipv~vMIRP~R~gdF~Ys~~E~~~M~~ 86 (146)
..++||-++|++++..|.+.|||.|=| |-. +.+.++++.+..+ +|+.+. || +=.+
T Consensus 178 ~~~Igvev~t~eea~~A~~~gaDyI~l------d~~--~~e~lk~~v~~~~~~ipi~As-----GG----------I~~~ 234 (265)
T TIGR00078 178 ALKIEVEVESLEEAEEAAEAGADIIML------DNM--KPEEIKEAVQLLKGRVLLEAS-----GG----------ITLD 234 (265)
T ss_pred CCeEEEEeCCHHHHHHHHHcCCCEEEE------CCC--CHHHHHHHHHHhcCCCcEEEE-----CC----------CCHH
Confidence 357999999999999999999998877 223 4477888777653 777664 44 1127
Q ss_pred HHHHHHHcCCCEEEEeeecCCC-CcCH
Q psy7930 87 DCHQFVESGADGFVIGALTGEQ-EIDI 112 (146)
Q Consensus 87 dI~~~~~~GadG~VfG~L~~dg-~iD~ 112 (146)
.+..+.+.|+|++++|.++... .+|.
T Consensus 235 ni~~~a~~Gvd~Isvgait~sa~~~D~ 261 (265)
T TIGR00078 235 NLEEYAETGVDVISSGALTHSVPALDF 261 (265)
T ss_pred HHHHHHHcCCCEEEeCHHHcCCCccce
Confidence 7899999999999999999743 4553
No 8
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.23 E-value=0.0074 Score=45.62 Aligned_cols=105 Identities=19% Similarity=0.224 Sum_probs=71.8
Q ss_pred CHHHHHHHHHcCCCEEEecCCCCCCCCCCC------HHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930 18 SVASALAAVRGGADRLELCAALSEGGLTPT------LGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMALDCH 89 (146)
Q Consensus 18 s~~~a~~A~~~GAdRIELc~~l~~GGlTPS------~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~ 89 (146)
..+.+..|.+.|||=+.+...+ +.-|+ ...++++.+.+ ++|+.+-.+| ..- ++.+++..+ .+
T Consensus 67 ~~~~a~~a~~~Gad~i~v~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p-~~~---~~~~~~~~~---~~ 136 (201)
T cd00945 67 KVAEVEEAIDLGADEIDVVINI---GSLKEGDWEEVLEEIAAVVEAADGGLPLKVILET-RGL---KTADEIAKA---AR 136 (201)
T ss_pred HHHHHHHHHHcCCCEEEEeccH---HHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEEC-CCC---CCHHHHHHH---HH
Confidence 4578899999999999997654 33455 45566666764 8999888888 332 555554443 55
Q ss_pred HHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC-CCCeEEeec
Q psy7930 90 QFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG-DRPITFHRA 132 (146)
Q Consensus 90 ~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~-~~~vtFHRA 132 (146)
.+.+.|+++|-...=...+..|.+.++++++..+ ++++..---
T Consensus 137 ~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg 180 (201)
T cd00945 137 IAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGG 180 (201)
T ss_pred HHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECC
Confidence 5677899999765422234569999999998875 456544433
No 9
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=97.22 E-value=0.0063 Score=51.79 Aligned_cols=105 Identities=23% Similarity=0.234 Sum_probs=74.1
Q ss_pred EEecCHHHHHHHHHcCCCEEEecCCCCCCCC---CCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHH
Q psy7930 14 VCVDSVASALAAVRGGADRLELCAALSEGGL---TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQ 90 (146)
Q Consensus 14 vcv~s~~~a~~A~~~GAdRIELc~~l~~GGl---TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~ 90 (146)
..|.|.+.+..|++.|+|-|-+-.. ..||. +|+..+++++++.+++||.+ -|| . .+ -+|+..
T Consensus 114 ~~v~s~~~a~~a~~~GaD~Ivv~g~-eagGh~g~~~~~~ll~~v~~~~~iPvia-----aGG-I-~~-------~~~~~~ 178 (307)
T TIGR03151 114 PVVASVALAKRMEKAGADAVIAEGM-ESGGHIGELTTMALVPQVVDAVSIPVIA-----AGG-I-AD-------GRGMAA 178 (307)
T ss_pred EEcCCHHHHHHHHHcCCCEEEEECc-ccCCCCCCCcHHHHHHHHHHHhCCCEEE-----ECC-C-CC-------HHHHHH
Confidence 4678999999999999999877544 55554 46789999999988999743 355 2 22 245777
Q ss_pred HHHcCCCEEEEee---ecCCCCcCHHHHHHHHHHhCCCCeEEeeccc
Q psy7930 91 FVESGADGFVIGA---LTGEQEIDIEFIRQLKTIIGDRPITFHRAFD 134 (146)
Q Consensus 91 ~~~~GadG~VfG~---L~~dg~iD~~~~~~Li~~a~~~~vtFHRAFD 134 (146)
+..+|||||++|- ++++..+....-+.|+ .+..-..+.-++|.
T Consensus 179 al~~GA~gV~iGt~f~~t~Es~~~~~~k~~l~-~~~~~dt~~t~~~~ 224 (307)
T TIGR03151 179 AFALGAEAVQMGTRFLCAKECNVHPNYKEKVL-KAKDRDTVVTGAST 224 (307)
T ss_pred HHHcCCCEeecchHHhcccccCCCHHHHHHHH-hCCCCCEEEEecCC
Confidence 7779999999993 4566666666544454 45555555556654
No 10
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.18 E-value=0.0025 Score=53.31 Aligned_cols=81 Identities=27% Similarity=0.392 Sum_probs=60.8
Q ss_pred cceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC----CCcEEEEEccCCCCCcccCHHHHHHH
Q psy7930 9 KTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV----LVPVFVMIRVRAGFDFVFSQAEKEIM 84 (146)
Q Consensus 9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~----~ipv~vMIRP~R~gdF~Ys~~E~~~M 84 (146)
...++|-++|++++..|.+.|||.|=| |-.+| +.++++.+.. ++||.+ -|| = =
T Consensus 181 ~~~I~vev~t~eea~~A~~~gaD~I~l------d~~~~--e~l~~~v~~i~~~~~i~i~a-----sGG-I---------t 237 (269)
T cd01568 181 EKKIEVEVETLEEAEEALEAGADIIML------DNMSP--EELKEAVKLLKGLPRVLLEA-----SGG-I---------T 237 (269)
T ss_pred CCeEEEecCCHHHHHHHHHcCCCEEEE------CCCCH--HHHHHHHHHhccCCCeEEEE-----ECC-C---------C
Confidence 457999999999999999999999977 33333 6667666654 455444 344 1 1
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCC-CcCH
Q psy7930 85 ALDCHQFVESGADGFVIGALTGEQ-EIDI 112 (146)
Q Consensus 85 ~~dI~~~~~~GadG~VfG~L~~dg-~iD~ 112 (146)
.+.|..+.+.|+|++++|.++... .+|.
T Consensus 238 ~~ni~~~a~~Gad~Isvgal~~s~~~~D~ 266 (269)
T cd01568 238 LENIRAYAETGVDVISTGALTHSAPALDI 266 (269)
T ss_pred HHHHHHHHHcCCCEEEEcHHHcCCCccCc
Confidence 377899999999999999999776 5664
No 11
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.12 E-value=0.0054 Score=51.47 Aligned_cols=81 Identities=27% Similarity=0.322 Sum_probs=62.8
Q ss_pred cceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930 9 KTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMAL 86 (146)
Q Consensus 9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~ 86 (146)
..++||-|+|++++..|.+.|||.|=|- ++ ++..++++++.. ++|+.+. || +=.+
T Consensus 182 ~~~Igvev~s~eea~~A~~~gaDyI~ld-~~-------~~e~l~~~~~~~~~~ipi~Ai-----GG----------I~~~ 238 (268)
T cd01572 182 TLKIEVEVETLEQLKEALEAGADIIMLD-NM-------SPEELREAVALLKGRVLLEAS-----GG----------ITLE 238 (268)
T ss_pred CCeEEEEECCHHHHHHHHHcCCCEEEEC-Cc-------CHHHHHHHHHHcCCCCcEEEE-----CC----------CCHH
Confidence 3569999999999999999999999773 22 357888888766 4787664 44 1127
Q ss_pred HHHHHHHcCCCEEEEeeecCC-CCcCH
Q psy7930 87 DCHQFVESGADGFVIGALTGE-QEIDI 112 (146)
Q Consensus 87 dI~~~~~~GadG~VfG~L~~d-g~iD~ 112 (146)
.|..+.+.|+|||++|.|+-+ ..+|.
T Consensus 239 ni~~~a~~Gvd~Iav~sl~~~a~~~D~ 265 (268)
T cd01572 239 NIRAYAETGVDYISVGALTHSAPALDI 265 (268)
T ss_pred HHHHHHHcCCCEEEEEeeecCCCccCc
Confidence 788999999999999999974 34554
No 12
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.10 E-value=0.0052 Score=52.05 Aligned_cols=82 Identities=23% Similarity=0.273 Sum_probs=61.6
Q ss_pred cceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930 9 KTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDC 88 (146)
Q Consensus 9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI 88 (146)
..+++|-+.|.+++..|.+.|||.|=| + .-+...++++++..+.|+. |-. -|| +=.+.+
T Consensus 188 ~~~Igvsv~tleea~~A~~~gaDyI~l-D-------~~~~e~l~~~~~~~~~~i~--i~A-iGG----------It~~ni 246 (277)
T PRK08072 188 MVKIEVETETEEQVREAVAAGADIIMF-D-------NRTPDEIREFVKLVPSAIV--TEA-SGG----------ITLENL 246 (277)
T ss_pred CCEEEEEeCCHHHHHHHHHcCCCEEEE-C-------CCCHHHHHHHHHhcCCCce--EEE-ECC----------CCHHHH
Confidence 357899999999999999999999966 2 2466889988887664432 222 244 123788
Q ss_pred HHHHHcCCCEEEEeeecCC-CCcC
Q psy7930 89 HQFVESGADGFVIGALTGE-QEID 111 (146)
Q Consensus 89 ~~~~~~GadG~VfG~L~~d-g~iD 111 (146)
..+.+.|+|||++|.|+-+ ..+|
T Consensus 247 ~~~a~~Gvd~IAvg~l~~sa~~~D 270 (277)
T PRK08072 247 PAYGGTGVDYISLGFLTHSVKALD 270 (277)
T ss_pred HHHHHcCCCEEEEChhhcCCcccc
Confidence 9999999999999999973 3444
No 13
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.07 E-value=0.0083 Score=46.70 Aligned_cols=95 Identities=23% Similarity=0.321 Sum_probs=64.9
Q ss_pred ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCC----CC--HHHHHHHHhhCC-CcEEEEEccCCCCCcccCHHHHH
Q psy7930 10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLT----PT--LGLYRVIKRLVL-VPVFVMIRVRAGFDFVFSQAEKE 82 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlT----PS--~g~i~~~~~~~~-ipv~vMIRP~R~gdF~Ys~~E~~ 82 (146)
.++-+.+.|.+++..|.+.|||-|-+- ....++.. |. ...++.+++..+ +||.+. ||= |.
T Consensus 105 ~~~g~~~~t~~e~~~a~~~gaD~v~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~-----GGI---~~---- 171 (212)
T PRK00043 105 AIIGLSTHTLEEAAAALAAGADYVGVG-PIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAI-----GGI---TP---- 171 (212)
T ss_pred CEEEEeCCCHHHHHHHhHcCCCEEEEC-CccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEE-----CCc---CH----
Confidence 457788889999999999999999664 33333332 22 678888888776 887653 551 22
Q ss_pred HHHHHHHHHHHcCCCEEEEe-eecCCCCcCHHHHHHHHHH
Q psy7930 83 IMALDCHQFVESGADGFVIG-ALTGEQEIDIEFIRQLKTI 121 (146)
Q Consensus 83 ~M~~dI~~~~~~GadG~VfG-~L~~dg~iD~~~~~~Li~~ 121 (146)
+++..+.++|++||++| .+..... -.+.+++|.+.
T Consensus 172 ---~~i~~~~~~Ga~gv~~gs~i~~~~d-~~~~~~~l~~~ 207 (212)
T PRK00043 172 ---ENAPEVLEAGADGVAVVSAITGAED-PEAAARALLAA 207 (212)
T ss_pred ---HHHHHHHHcCCCEEEEeHHhhcCCC-HHHHHHHHHHH
Confidence 67899999999999985 4443322 13445555543
No 14
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=97.07 E-value=0.0094 Score=47.33 Aligned_cols=86 Identities=20% Similarity=0.269 Sum_probs=63.5
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEE
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGF 99 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~ 99 (146)
+-|...+++||+.|-++.. .+=..-+...++.+++.+++||.++ +|..+.. .++.+++.|+||+
T Consensus 35 ~~A~~~~~~GA~~l~v~~~--~~~~~g~~~~~~~i~~~v~iPi~~~-------~~i~~~~-------~v~~~~~~Gad~v 98 (217)
T cd00331 35 EIAKAYEKAGAAAISVLTE--PKYFQGSLEDLRAVREAVSLPVLRK-------DFIIDPY-------QIYEARAAGADAV 98 (217)
T ss_pred HHHHHHHHcCCCEEEEEeC--ccccCCCHHHHHHHHHhcCCCEEEC-------CeecCHH-------HHHHHHHcCCCEE
Confidence 4578899999999988863 1222236689999999889999753 4666653 3788999999999
Q ss_pred EEeeecCCCCcCHHHHHHHHHHhCCC
Q psy7930 100 VIGALTGEQEIDIEFIRQLKTIIGDR 125 (146)
Q Consensus 100 VfG~L~~dg~iD~~~~~~Li~~a~~~ 125 (146)
++|... ++.+.++++++.+..+
T Consensus 99 ~l~~~~----~~~~~~~~~~~~~~~~ 120 (217)
T cd00331 99 LLIVAA----LDDEQLKELYELAREL 120 (217)
T ss_pred EEeecc----CCHHHHHHHHHHHHHc
Confidence 999754 3347778888777533
No 15
>PRK15452 putative protease; Provisional
Probab=97.06 E-value=0.0077 Score=54.04 Aligned_cols=89 Identities=12% Similarity=0.047 Sum_probs=64.6
Q ss_pred ccceeEEEecCHHHHHHHHHcCCCEEEecC---CCCCCCCCCCHHHHHHHHhh---CCCcEEEEEccCCCCCcccCHHHH
Q psy7930 8 NKTTLEVCVDSVASALAAVRGGADRLELCA---ALSEGGLTPTLGLYRVIKRL---VLVPVFVMIRVRAGFDFVFSQAEK 81 (146)
Q Consensus 8 ~~~~lEvcv~s~~~a~~A~~~GAdRIELc~---~l~~GGlTPS~g~i~~~~~~---~~ipv~vMIRP~R~gdF~Ys~~E~ 81 (146)
+++-|=+-+.|++.+.+|.++|||+|=+=. ++-...-.-+...++++.+. .++.|++.+.- +.+ +.|+
T Consensus 2 ~~peLlapag~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~-----i~~-e~el 75 (443)
T PRK15452 2 FKPELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNI-----APH-NAKL 75 (443)
T ss_pred CccEEEEECCCHHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecC-----cCC-HHHH
Confidence 345555678999999999999999998821 11000111244566666554 37889888764 333 6889
Q ss_pred HHHHHHHHHHHHcCCCEEEEe
Q psy7930 82 EIMALDCHQFVESGADGFVIG 102 (146)
Q Consensus 82 ~~M~~dI~~~~~~GadG~VfG 102 (146)
+.+.+.++.+.++|+|||+++
T Consensus 76 ~~~~~~l~~l~~~gvDgvIV~ 96 (443)
T PRK15452 76 KTFIRDLEPVIAMKPDALIMS 96 (443)
T ss_pred HHHHHHHHHHHhCCCCEEEEc
Confidence 999999999999999999987
No 16
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=96.99 E-value=0.013 Score=44.27 Aligned_cols=79 Identities=28% Similarity=0.358 Sum_probs=58.9
Q ss_pred cceeEEEecCHHHHHHHHHcCCCEEEecCCCC---CCC--CCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHH
Q psy7930 9 KTTLEVCVDSVASALAAVRGGADRLELCAALS---EGG--LTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEI 83 (146)
Q Consensus 9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~---~GG--lTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~ 83 (146)
...+.+-+.|.+++..+.+.|+|.|-+-.-.. -.| ...+...++++++..++||.+. ||- +.
T Consensus 95 ~~~~g~~~~t~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~-----GGi---~~----- 161 (196)
T cd00564 95 DLIIGVSTHSLEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAI-----GGI---TP----- 161 (196)
T ss_pred CCEEEeeCCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEE-----CCC---CH-----
Confidence 45677888899999999999999997743221 113 2345788888888778888775 441 11
Q ss_pred HHHHHHHHHHcCCCEEEEe
Q psy7930 84 MALDCHQFVESGADGFVIG 102 (146)
Q Consensus 84 M~~dI~~~~~~GadG~VfG 102 (146)
+++..++++|++||++|
T Consensus 162 --~~i~~~~~~Ga~~i~~g 178 (196)
T cd00564 162 --ENAAEVLAAGADGVAVI 178 (196)
T ss_pred --HHHHHHHHcCCCEEEEe
Confidence 47888999999999999
No 17
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=96.84 E-value=0.01 Score=50.64 Aligned_cols=110 Identities=25% Similarity=0.286 Sum_probs=72.5
Q ss_pred cceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCC-----CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHH
Q psy7930 9 KTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTP-----TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEI 83 (146)
Q Consensus 9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTP-----S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~ 83 (146)
.+.+=..|.|++.|+.|++.|+|-|=+- ..+.||-+. ...++.++++.+++||.+ -|| . ++.
T Consensus 136 gi~v~~~v~s~~~A~~a~~~G~D~iv~q-G~eAGGH~g~~~~~~~~L~~~v~~~~~iPVia-----AGG-I-~dg----- 202 (330)
T PF03060_consen 136 GIKVIPQVTSVREARKAAKAGADAIVAQ-GPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIA-----AGG-I-ADG----- 202 (330)
T ss_dssp T-EEEEEESSHHHHHHHHHTT-SEEEEE--TTSSEE---SSG-HHHHHHHHHHH-SS-EEE-----ESS----SH-----
T ss_pred CCccccccCCHHHHHHhhhcCCCEEEEe-ccccCCCCCccccceeeHHHHHhhhcCCcEEE-----ecC-c-CCH-----
Confidence 3445568999999999999999997644 556776555 467888888888999864 255 4 333
Q ss_pred HHHHHHHHHHcCCCEEEEe---eecCCCCcCHHHHHHHHHHhCCCCeEEeeccc
Q psy7930 84 MALDCHQFVESGADGFVIG---ALTGEQEIDIEFIRQLKTIIGDRPITFHRAFD 134 (146)
Q Consensus 84 M~~dI~~~~~~GadG~VfG---~L~~dg~iD~~~~~~Li~~a~~~~vtFHRAFD 134 (146)
+++..+..+|||||++| ..|++..+....=+.|++ ++.-..+.-+.|+
T Consensus 203 --~~iaaal~lGA~gV~~GTrFl~t~Es~~~~~~K~~l~~-a~~~dtv~t~~~~ 253 (330)
T PF03060_consen 203 --RGIAAALALGADGVQMGTRFLATEESGASDAYKQALVD-ATEEDTVLTRSFS 253 (330)
T ss_dssp --HHHHHHHHCT-SEEEESHHHHTSTTS-S-HHHHHHHHH-GGTT-EEEESTTT
T ss_pred --HHHHHHHHcCCCEeecCCeEEecccccChHHHHHHHHh-CCCCCEEEEeecc
Confidence 56667788999999999 457777787655555555 6667788888887
No 18
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=96.75 E-value=0.01 Score=49.89 Aligned_cols=82 Identities=32% Similarity=0.332 Sum_probs=55.7
Q ss_pred ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhh-CCCcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930 10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRL-VLVPVFVMIRVRAGFDFVFSQAEKEIMAL 86 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~-~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~ 86 (146)
.++||-|+|++++..|.+.|||.|-|- + ..|+ ...++.+++. .++|+.+ -||= + .+
T Consensus 184 ~~IgVev~t~eea~~A~~~gaD~I~ld-~-----~~p~~l~~~~~~~~~~~~~i~i~A-----sGGI---~-------~~ 242 (272)
T cd01573 184 KKIVVEVDSLEEALAAAEAGADILQLD-K-----FSPEELAELVPKLRSLAPPVLLAA-----AGGI---N-------IE 242 (272)
T ss_pred CeEEEEcCCHHHHHHHHHcCCCEEEEC-C-----CCHHHHHHHHHHHhccCCCceEEE-----ECCC---C-------HH
Confidence 368999999999999999999988664 3 3332 1233333222 1455444 3551 1 26
Q ss_pred HHHHHHHcCCCEEEEeeecCCCCcCH
Q psy7930 87 DCHQFVESGADGFVIGALTGEQEIDI 112 (146)
Q Consensus 87 dI~~~~~~GadG~VfG~L~~dg~iD~ 112 (146)
.+..+.+.|+|+|++|.++.-..+|.
T Consensus 243 ni~~~~~~Gvd~I~vsai~~a~~~D~ 268 (272)
T cd01573 243 NAAAYAAAGADILVTSAPYYAKPADI 268 (272)
T ss_pred HHHHHHHcCCcEEEEChhhcCcccce
Confidence 78889999999999999986555553
No 19
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=96.75 E-value=0.01 Score=48.66 Aligned_cols=91 Identities=22% Similarity=0.300 Sum_probs=59.9
Q ss_pred HHHHHHHHHcCCCEEEec----CCCCCCCCCC---------------CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHH
Q psy7930 19 VASALAAVRGGADRLELC----AALSEGGLTP---------------TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQA 79 (146)
Q Consensus 19 ~~~a~~A~~~GAdRIELc----~~l~~GGlTP---------------S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~ 79 (146)
.+.+...+++|||.|||. +-..-|-.-| ....++++++..++|+++|+-= .--|.|..+
T Consensus 17 ~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~--n~~~~~G~~ 94 (242)
T cd04724 17 LEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYY--NPILQYGLE 94 (242)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEec--CHHHHhCHH
Confidence 356778889999999999 2223333334 2557888887779999999762 012444433
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930 80 EKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 80 E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~ 123 (146)
.+ ++.++++|++|+++-=|. .+...++++.++
T Consensus 95 ~f------i~~~~~aG~~giiipDl~------~ee~~~~~~~~~ 126 (242)
T cd04724 95 RF------LRDAKEAGVDGLIIPDLP------PEEAEEFREAAK 126 (242)
T ss_pred HH------HHHHHHCCCcEEEECCCC------HHHHHHHHHHHH
Confidence 33 667889999999995332 245566666665
No 20
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=96.73 E-value=0.025 Score=43.80 Aligned_cols=79 Identities=19% Similarity=0.285 Sum_probs=59.2
Q ss_pred cceeEEEecCHHHHHHHHHcCCCEEEecCCCCCC---CCCC--CHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHH
Q psy7930 9 KTTLEVCVDSVASALAAVRGGADRLELCAALSEG---GLTP--TLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKE 82 (146)
Q Consensus 9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~G---GlTP--S~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~ 82 (146)
..++.+-+.|.+++..|.+.|+|-|-+..-+..+ +.+| ....++.+++.. ++||.+. ||- +.
T Consensus 96 ~~~ig~s~h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~-----GGI---~~---- 163 (196)
T TIGR00693 96 DKIIGVSTHNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAI-----GGI---TL---- 163 (196)
T ss_pred CCEEEEeCCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEE-----CCc---CH----
Confidence 4678999999999999999999999875433332 3333 578888887765 5887664 551 22
Q ss_pred HHHHHHHHHHHcCCCEEEEe
Q psy7930 83 IMALDCHQFVESGADGFVIG 102 (146)
Q Consensus 83 ~M~~dI~~~~~~GadG~VfG 102 (146)
+++..+++.|++||++|
T Consensus 164 ---~~~~~~~~~G~~gva~~ 180 (196)
T TIGR00693 164 ---ENAAEVLAAGADGVAVV 180 (196)
T ss_pred ---HHHHHHHHcCCCEEEEh
Confidence 67888899999999887
No 21
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.70 E-value=0.013 Score=49.93 Aligned_cols=79 Identities=23% Similarity=0.223 Sum_probs=60.1
Q ss_pred ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-----CCcEEEEEccCCCCCcccCHHHHHHH
Q psy7930 10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-----LVPVFVMIRVRAGFDFVFSQAEKEIM 84 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-----~ipv~vMIRP~R~gdF~Ys~~E~~~M 84 (146)
..+||-++|++++..|.+.|||.|=|- ..|++.++++.+.. ++|+. . -|| +=
T Consensus 197 ~~I~VEv~tleea~eA~~~GaD~I~LD--------n~~~e~l~~av~~~~~~~~~i~le----A-sGG----------It 253 (288)
T PRK07428 197 LTIEVETETLEQVQEALEYGADIIMLD--------NMPVDLMQQAVQLIRQQNPRVKIE----A-SGN----------IT 253 (288)
T ss_pred CEEEEECCCHHHHHHHHHcCCCEEEEC--------CCCHHHHHHHHHHHHhcCCCeEEE----E-ECC----------CC
Confidence 579999999999999999999999776 45668888877643 34433 3 344 11
Q ss_pred HHHHHHHHHcCCCEEEEeeecCC-CCcC
Q psy7930 85 ALDCHQFVESGADGFVIGALTGE-QEID 111 (146)
Q Consensus 85 ~~dI~~~~~~GadG~VfG~L~~d-g~iD 111 (146)
.+.|..+.+.|+|++++|.++-+ ..+|
T Consensus 254 ~~ni~~ya~tGvD~Isvgsl~~sa~~~D 281 (288)
T PRK07428 254 LETIRAVAETGVDYISSSAPITRSPWLD 281 (288)
T ss_pred HHHHHHHHHcCCCEEEEchhhhCCCccc
Confidence 37788999999999999999863 3344
No 22
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=96.62 E-value=0.016 Score=49.40 Aligned_cols=94 Identities=29% Similarity=0.333 Sum_probs=60.1
Q ss_pred ceeEEEecCHH----HHHHHHHcCCCEEEe---cCCCCCC--CCCC---CHHHHHHHHhhCCCcEEEEEccCCCCCcccC
Q psy7930 10 TTLEVCVDSVA----SALAAVRGGADRLEL---CAALSEG--GLTP---TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFS 77 (146)
Q Consensus 10 ~~lEvcv~s~~----~a~~A~~~GAdRIEL---c~~l~~G--GlTP---S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys 77 (146)
++.-|...+.+ -+..+++.|||-||| |..-..+ |.++ ...+++.+++.+++||.|-++| - + +
T Consensus 104 vi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p-~---~--~ 177 (334)
T PRK07565 104 VIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSP-Y---F--S 177 (334)
T ss_pred EEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCC-C---c--h
Confidence 35566566654 355667789999999 4222221 3333 3467788888889999999999 2 1 1
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHH
Q psy7930 78 QAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEF 114 (146)
Q Consensus 78 ~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~ 114 (146)
+ ...-.+.+.+.|+|||++---.....+|.+.
T Consensus 178 --~---~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~ 209 (334)
T PRK07565 178 --N---LANMAKRLDAAGADGLVLFNRFYQPDIDLET 209 (334)
T ss_pred --h---HHHHHHHHHHcCCCeEEEECCcCCCCcChhh
Confidence 1 2333566788999999884323344566544
No 23
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=96.57 E-value=0.02 Score=49.55 Aligned_cols=89 Identities=15% Similarity=0.156 Sum_probs=68.5
Q ss_pred ceeEEEecCHHHHHHHHH------cCCCEEEecCCC--CCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHH
Q psy7930 10 TTLEVCVDSVASALAAVR------GGADRLELCAAL--SEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEK 81 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~------~GAdRIELc~~l--~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~ 81 (146)
..+||=|+|++++..|.+ +|||.|= |+|+ ...-+..|...++++.+..+-. +.|-- .|| =
T Consensus 204 ~kIeVEv~tleea~ea~~~~~~~~agaDiIm-LDnm~~~~~~~~~~~e~l~~av~~~~~~--~~lEa-SGG-I------- 271 (308)
T PLN02716 204 MKIEVETRTLEEVKEVLEYLSDTKTSLTRVM-LDNMVVPLENGDVDVSMLKEAVELINGR--FETEA-SGN-V------- 271 (308)
T ss_pred eeEEEEECCHHHHHHHHHhcccccCCCCEEE-eCCCcccccccCCCHHHHHHHHHhhCCC--ceEEE-ECC-C-------
Confidence 469999999999999999 9999984 5666 7778888999999988765311 22555 455 2
Q ss_pred HHHHHHHHHHHHcCCCEEEEeeecCC-CCcCH
Q psy7930 82 EIMALDCHQFVESGADGFVIGALTGE-QEIDI 112 (146)
Q Consensus 82 ~~M~~dI~~~~~~GadG~VfG~L~~d-g~iD~ 112 (146)
=.+.|..+.+.|+|.++.|.||-+ ..+|.
T Consensus 272 --t~~ni~~yA~tGVD~Is~Galthsa~~~Di 301 (308)
T PLN02716 272 --TLDTVHKIGQTGVTYISSGALTHSVKALDI 301 (308)
T ss_pred --CHHHHHHHHHcCCCEEEeCccccCCCccce
Confidence 246788999999999999999974 34553
No 24
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.53 E-value=0.024 Score=47.97 Aligned_cols=82 Identities=21% Similarity=0.312 Sum_probs=61.7
Q ss_pred ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC--CcEEEEEccCCCCCcccCHHHHHHHHHH
Q psy7930 10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL--VPVFVMIRVRAGFDFVFSQAEKEIMALD 87 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~--ipv~vMIRP~R~gdF~Ys~~E~~~M~~d 87 (146)
.++||=|+|++++..|.+.|||.|=| ++ ||+..++++.+..+ -| ++.|-- -|| . +. +.
T Consensus 183 ~~I~VEv~tleea~~A~~~GaDiI~L-Dn-------~~~e~l~~~v~~~~~~~~-~~~ieA-sGg-I--t~-------~n 242 (273)
T PRK05848 183 AKIEIECESLEEAKNAMNAGADIVMC-DN-------MSVEEIKEVVAYRNANYP-HVLLEA-SGN-I--TL-------EN 242 (273)
T ss_pred ceEEEEeCCHHHHHHHHHcCCCEEEE-CC-------CCHHHHHHHHHHhhccCC-CeEEEE-ECC-C--CH-------HH
Confidence 56899999999999999999998875 43 68999999888532 23 334444 344 4 43 45
Q ss_pred HHHHHHcCCCEEEEeeecCC-CCcC
Q psy7930 88 CHQFVESGADGFVIGALTGE-QEID 111 (146)
Q Consensus 88 I~~~~~~GadG~VfG~L~~d-g~iD 111 (146)
++.+.+.|+|.||+|.++-+ ..+|
T Consensus 243 i~~ya~~GvD~IsvG~l~~sa~~~D 267 (273)
T PRK05848 243 INAYAKSGVDAISSGSLIHQATWID 267 (273)
T ss_pred HHHHHHcCCCEEEeChhhcCCCccc
Confidence 67789999999999999974 3355
No 25
>PRK07695 transcriptional regulator TenI; Provisional
Probab=96.53 E-value=0.031 Score=43.98 Aligned_cols=82 Identities=21% Similarity=0.301 Sum_probs=58.6
Q ss_pred cceeEEEecCHHHHHHHHHcCCCEEEecCCCCC----CCCCC-CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHH
Q psy7930 9 KTTLEVCVDSVASALAAVRGGADRLELCAALSE----GGLTP-TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEI 83 (146)
Q Consensus 9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~----GGlTP-S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~ 83 (146)
..++.+.+.|.+++..|.+.|||-|-+- .... .|.+| ....++++++.+++||.+. ||= +.
T Consensus 95 ~~~ig~s~~s~e~a~~a~~~Gadyi~~g-~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~-----GGI---~~----- 160 (201)
T PRK07695 95 YLHVGYSVHSLEEAIQAEKNGADYVVYG-HVFPTDCKKGVPARGLEELSDIARALSIPVIAI-----GGI---TP----- 160 (201)
T ss_pred CCEEEEeCCCHHHHHHHHHcCCCEEEEC-CCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEE-----cCC---CH-----
Confidence 4568888999999999999999999543 2211 12222 4678888888888998753 662 33
Q ss_pred HHHHHHHHHHcCCCEE-EEeeecC
Q psy7930 84 MALDCHQFVESGADGF-VIGALTG 106 (146)
Q Consensus 84 M~~dI~~~~~~GadG~-VfG~L~~ 106 (146)
+++..+.+.|++|| |.+.+..
T Consensus 161 --~~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 161 --ENTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred --HHHHHHHHcCCCEEEEEHHHhc
Confidence 56777789999999 5556654
No 26
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=96.45 E-value=0.071 Score=42.29 Aligned_cols=94 Identities=29% Similarity=0.291 Sum_probs=63.0
Q ss_pred EecCHHHHHHHHHcCCCEEEecCCCCCCCCC-----CCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930 15 CVDSVASALAAVRGGADRLELCAALSEGGLT-----PTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH 89 (146)
Q Consensus 15 cv~s~~~a~~A~~~GAdRIELc~~l~~GGlT-----PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~ 89 (146)
-+.+.+.+..+.+.|||-|=+-+. ..||.+ +...+++++++..++||.+ -|| ... .+|+.
T Consensus 108 ~v~~~~~~~~~~~~gad~i~~~~~-~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~-----~GG-I~~--------~~~v~ 172 (236)
T cd04730 108 TVTSVEEARKAEAAGADALVAQGA-EAGGHRGTFDIGTFALVPEVRDAVDIPVIA-----AGG-IAD--------GRGIA 172 (236)
T ss_pred eCCCHHHHHHHHHcCCCEEEEeCc-CCCCCCCccccCHHHHHHHHHHHhCCCEEE-----ECC-CCC--------HHHHH
Confidence 356788999999999999876543 445543 4467899888888888764 244 332 35677
Q ss_pred HHHHcCCCEEEEe---eecCCCCcCHHHHHHHHHHhCC
Q psy7930 90 QFVESGADGFVIG---ALTGEQEIDIEFIRQLKTIIGD 124 (146)
Q Consensus 90 ~~~~~GadG~VfG---~L~~dg~iD~~~~~~Li~~a~~ 124 (146)
.+.+.|+|||++| +-+.+-....+. ++++..+.+
T Consensus 173 ~~l~~GadgV~vgS~l~~~~e~~~~~~~-~~~~~~~~~ 209 (236)
T cd04730 173 AALALGADGVQMGTRFLATEESGASPAY-KQALLAATA 209 (236)
T ss_pred HHHHcCCcEEEEchhhhcCcccCCCHHH-HHHHHcCCC
Confidence 7777999999999 333343344444 455554444
No 27
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=96.42 E-value=0.041 Score=45.03 Aligned_cols=85 Identities=26% Similarity=0.259 Sum_probs=55.9
Q ss_pred HHHcCCCEEEec---CCCCCCCCCCC-----------HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHH
Q psy7930 25 AVRGGADRLELC---AALSEGGLTPT-----------LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQ 90 (146)
Q Consensus 25 A~~~GAdRIELc---~~l~~GGlTPS-----------~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~ 90 (146)
.+++ ||-|||. ++...+|.+=. ..+++++++..++|+++|..- .. |+|+.+++ ++.
T Consensus 27 l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~-n~--~~~~~~~~------i~~ 96 (244)
T PRK13125 27 LVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYL-ED--YVDSLDNF------LNM 96 (244)
T ss_pred HHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEec-ch--hhhCHHHH------HHH
Confidence 3455 9999996 55555555411 257888888889999988754 22 77766653 556
Q ss_pred HHHcCCCEEEEeeecCCCCcC-HHHHHHHHHHhC
Q psy7930 91 FVESGADGFVIGALTGEQEID-IEFIRQLKTIIG 123 (146)
Q Consensus 91 ~~~~GadG~VfG~L~~dg~iD-~~~~~~Li~~a~ 123 (146)
+++.|+||+.|=.| .++ .+...++++.++
T Consensus 97 ~~~~Gadgvii~dl----p~e~~~~~~~~~~~~~ 126 (244)
T PRK13125 97 ARDVGADGVLFPDL----LIDYPDDLEKYVEIIK 126 (244)
T ss_pred HHHcCCCEEEECCC----CCCcHHHHHHHHHHHH
Confidence 77899999988322 222 345666777665
No 28
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=96.34 E-value=0.11 Score=40.88 Aligned_cols=110 Identities=22% Similarity=0.353 Sum_probs=69.5
Q ss_pred ceeEEEecCHH----HHHHHHHcCCCEEEecCCC--------CCCCC---CC--CHHHHHHHHhhCCCcEEEEEccCCCC
Q psy7930 10 TTLEVCVDSVA----SALAAVRGGADRLELCAAL--------SEGGL---TP--TLGLYRVIKRLVLVPVFVMIRVRAGF 72 (146)
Q Consensus 10 ~~lEvcv~s~~----~a~~A~~~GAdRIELc~~l--------~~GGl---TP--S~g~i~~~~~~~~ipv~vMIRP~R~g 72 (146)
++..++..+++ .+..++++|+|-|||+.+- .-||. .| ...+++.+++.+++||.|=+|. +.
T Consensus 57 ~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~--~~ 134 (231)
T cd02801 57 LIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRL--GW 134 (231)
T ss_pred EEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEee--cc
Confidence 56788888886 5666777899999997531 01111 22 1356667777777888888876 22
Q ss_pred CcccCHHHHHHHHHHHHHHHHcCCCEEEEeeecC----CCCcCHHHHHHHHHHhCCCCeE
Q psy7930 73 DFVFSQAEKEIMALDCHQFVESGADGFVIGALTG----EQEIDIEFIRQLKTIIGDRPIT 128 (146)
Q Consensus 73 dF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~----dg~iD~~~~~~Li~~a~~~~vt 128 (146)
+ .. +...+-++.+.++|+|.+.+-.-+. .+..|.+.++++.+.. +.|+.
T Consensus 135 ~----~~--~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~-~ipvi 187 (231)
T cd02801 135 D----DE--EETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAV-SIPVI 187 (231)
T ss_pred C----Cc--hHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCC-CCeEE
Confidence 1 11 3455566777888999997644332 2356888887776633 34544
No 29
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=96.34 E-value=0.025 Score=48.51 Aligned_cols=80 Identities=21% Similarity=0.320 Sum_probs=55.2
Q ss_pred ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCC--------------------------------CCCCCHHHHHHHHhh
Q psy7930 10 TTLEVCVDSVASALAAVRGGADRLELCAALSEG--------------------------------GLTPTLGLYRVIKRL 57 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~G--------------------------------GlTPS~g~i~~~~~~ 57 (146)
.++=.=|.|+++++.|.+.|||-|=---.-..| ..-|.+.+++++++.
T Consensus 113 ~l~MAD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~ 192 (283)
T cd04727 113 VPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKL 192 (283)
T ss_pred CcEEccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHh
Confidence 334445789999999999999987543211111 123678899999998
Q ss_pred CCCcEE-EEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930 58 VLVPVF-VMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIG 102 (146)
Q Consensus 58 ~~ipv~-vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG 102 (146)
.++||. +.+ || .+|+ +|+..+.++|++||++|
T Consensus 193 ~~iPVV~iAe----GG--I~Tp-------ena~~v~e~GAdgVaVG 225 (283)
T cd04727 193 GRLPVVNFAA----GG--VATP-------ADAALMMQLGADGVFVG 225 (283)
T ss_pred cCCCeEEEEe----CC--CCCH-------HHHHHHHHcCCCEEEEc
Confidence 899975 232 44 3344 45666678999999988
No 30
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=96.30 E-value=0.033 Score=47.61 Aligned_cols=92 Identities=29% Similarity=0.310 Sum_probs=59.8
Q ss_pred eeEEEecCHHH----HHHHHHcCCCEEEecCC-CC-CCCCC---C---CHHHHHHHHhhCCCcEEEEEccCCCCCcccCH
Q psy7930 11 TLEVCVDSVAS----ALAAVRGGADRLELCAA-LS-EGGLT---P---TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQ 78 (146)
Q Consensus 11 ~lEvcv~s~~~----a~~A~~~GAdRIELc~~-l~-~GGlT---P---S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~ 78 (146)
+.-|...+.++ +..+++.|||=|||+-+ +. ..+.+ + -..+++.+++.+++||.|=++| .- +
T Consensus 103 i~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p-~~-----~- 175 (325)
T cd04739 103 IASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSP-FF-----S- 175 (325)
T ss_pred EEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCC-Cc-----c-
Confidence 45666666654 55567789999999753 11 11222 1 1467788888889999999999 31 1
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHH
Q psy7930 79 AEKEIMALDCHQFVESGADGFVIGALTGEQEIDIE 113 (146)
Q Consensus 79 ~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~ 113 (146)
.+..-++.+.++|+|||++--=.....+|.+
T Consensus 176 ----~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~ 206 (325)
T cd04739 176 ----ALAHMAKQLDAAGADGLVLFNRFYQPDIDLE 206 (325)
T ss_pred ----CHHHHHHHHHHcCCCeEEEEcCcCCCCcccc
Confidence 2445566788999999998543334446653
No 31
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.26 E-value=0.074 Score=44.46 Aligned_cols=102 Identities=23% Similarity=0.276 Sum_probs=62.7
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCC-----CCCC-------------------HHHHHHHHhhC--CCcEEEEEccCCC-C
Q psy7930 20 ASALAAVRGGADRLELCAALSEGG-----LTPT-------------------LGLYRVIKRLV--LVPVFVMIRVRAG-F 72 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GG-----lTPS-------------------~g~i~~~~~~~--~ipv~vMIRP~R~-g 72 (146)
+.|..|+++|+|-|||..+ .|= ++|. ...++.+++.+ ++||.|=|+| .. .
T Consensus 145 ~aA~~a~~aGfDgveih~~--~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~-~~~~ 221 (327)
T cd02803 145 AAARRAKEAGFDGVEIHGA--HGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSA-DDFV 221 (327)
T ss_pred HHHHHHHHcCCCEEEEcch--hhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEech-hccC
Confidence 6778899999999999863 111 1442 56788888887 5666666666 21 1
Q ss_pred CcccCHHHHHHHHHHHHHHHHcCCCEEEEeeecCC------------CCcCHHHHHHHHHHhCCCCeE
Q psy7930 73 DFVFSQAEKEIMALDCHQFVESGADGFVIGALTGE------------QEIDIEFIRQLKTIIGDRPIT 128 (146)
Q Consensus 73 dF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~d------------g~iD~~~~~~Li~~a~~~~vt 128 (146)
+..++.+| +.+=++.+.+.|+|.+.+..-+.. ...+.+.++++.+.. +.|+.
T Consensus 222 ~~g~~~~e---~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi 285 (327)
T cd02803 222 PGGLTLEE---AIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV-KIPVI 285 (327)
T ss_pred CCCCCHHH---HHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC-CCCEE
Confidence 11244444 455566778899999987544322 134556666665554 34443
No 32
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=96.25 E-value=0.056 Score=43.31 Aligned_cols=79 Identities=24% Similarity=0.162 Sum_probs=55.9
Q ss_pred ceeEEEe-----------cCHHH-HHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccC
Q psy7930 10 TTLEVCV-----------DSVAS-ALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFS 77 (146)
Q Consensus 10 ~~lEvcv-----------~s~~~-a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys 77 (146)
+++|+.. +.++. +..|.+.|||-|-+- .|+....++++.+..++|| +.+ ||.=..|
T Consensus 125 ~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~-------~~~~~~~~~~i~~~~~~pv-v~~----GG~~~~~ 192 (235)
T cd00958 125 LIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTK-------YTGDAESFKEVVEGCPVPV-VIA----GGPKKDS 192 (235)
T ss_pred EEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEec-------CCCCHHHHHHHHhcCCCCE-EEe----CCCCCCC
Confidence 5677766 23343 667999999999882 2447888999999889997 332 4422334
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEee
Q psy7930 78 QAEKEIMALDCHQFVESGADGFVIGA 103 (146)
Q Consensus 78 ~~E~~~M~~dI~~~~~~GadG~VfG~ 103 (146)
.++. .+.++.+.++|++|+.+|-
T Consensus 193 ~~~~---l~~~~~~~~~Ga~gv~vg~ 215 (235)
T cd00958 193 EEEF---LKMVYDAMEAGAAGVAVGR 215 (235)
T ss_pred HHHH---HHHHHHHHHcCCcEEEech
Confidence 4443 4667788899999999994
No 33
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=96.24 E-value=0.023 Score=48.73 Aligned_cols=95 Identities=20% Similarity=0.290 Sum_probs=61.9
Q ss_pred EecCHHHHHHHHHcCCCEEEecCCCCCCC---------------------------------CCCCHHHHHHHHhhCCCc
Q psy7930 15 CVDSVASALAAVRGGADRLELCAALSEGG---------------------------------LTPTLGLYRVIKRLVLVP 61 (146)
Q Consensus 15 cv~s~~~a~~A~~~GAdRIELc~~l~~GG---------------------------------lTPS~g~i~~~~~~~~ip 61 (146)
=+.|+++++.|.+.|||-|=--..-..|- +-|++.+++++++..++|
T Consensus 120 d~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~~iP 199 (287)
T TIGR00343 120 GARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLGKLP 199 (287)
T ss_pred cCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhCCCC
Confidence 37899999999999999886552212221 448999999999988999
Q ss_pred EEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEee-ecCCCCcCHHHHHHHHHHh
Q psy7930 62 VFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGA-LTGEQEIDIEFIRQLKTII 122 (146)
Q Consensus 62 v~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~-L~~dg~iD~~~~~~Li~~a 122 (146)
|.- + . -|| ..|+ +|+..+.++|+|||++|= ++.... -...+++++++.
T Consensus 200 VV~-f-A-iGG--I~TP-------edAa~~melGAdGVaVGSaI~ks~d-P~~~akafv~ai 248 (287)
T TIGR00343 200 VVN-F-A-AGG--VATP-------ADAALMMQLGADGVFVGSGIFKSSN-PEKLAKAIVEAT 248 (287)
T ss_pred EEE-e-c-cCC--CCCH-------HHHHHHHHcCCCEEEEhHHhhcCCC-HHHHHHHHHHHH
Confidence 741 1 1 244 2344 456667789999999873 333222 133455555544
No 34
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=96.23 E-value=0.029 Score=46.84 Aligned_cols=81 Identities=21% Similarity=0.282 Sum_probs=54.2
Q ss_pred ceeEEEecCHHHHH----HHHHcC-CCEEEec---CCCCCCCCCC------CHHHHHHHHhhCCCcEEEEEccCCCCCcc
Q psy7930 10 TTLEVCVDSVASAL----AAVRGG-ADRLELC---AALSEGGLTP------TLGLYRVIKRLVLVPVFVMIRVRAGFDFV 75 (146)
Q Consensus 10 ~~lEvcv~s~~~a~----~A~~~G-AdRIELc---~~l~~GGlTP------S~g~i~~~~~~~~ipv~vMIRP~R~gdF~ 75 (146)
+++-|+..+.++.. .+++.| +|-|||+ -+...||... ...+++.+++.+++||.|=|+| ..
T Consensus 94 ~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~-~~---- 168 (301)
T PRK07259 94 IIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTP-NV---- 168 (301)
T ss_pred EEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCC-Cc----
Confidence 45677777776644 455668 9999994 3444344332 3566777777778999888887 21
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCEEEE
Q psy7930 76 FSQAEKEIMALDCHQFVESGADGFVI 101 (146)
Q Consensus 76 Ys~~E~~~M~~dI~~~~~~GadG~Vf 101 (146)
+.+.+-++.+.++|+||+++
T Consensus 169 ------~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 169 ------TDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred ------hhHHHHHHHHHHcCCCEEEE
Confidence 12334456788899999975
No 35
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.21 E-value=0.041 Score=44.86 Aligned_cols=96 Identities=14% Similarity=0.136 Sum_probs=66.9
Q ss_pred ceeEE-EecCHHHHHHHHHcCCCEEEecCCCC--CCCCCC-CHHHHHHHHhhCCCcEEEE--EccCCCCCcccCHHHHHH
Q psy7930 10 TTLEV-CVDSVASALAAVRGGADRLELCAALS--EGGLTP-TLGLYRVIKRLVLVPVFVM--IRVRAGFDFVFSQAEKEI 83 (146)
Q Consensus 10 ~~lEv-cv~s~~~a~~A~~~GAdRIELc~~l~--~GGlTP-S~g~i~~~~~~~~ipv~vM--IRP~R~gdF~Ys~~E~~~ 83 (146)
.++=+ |+.|.+++..|.+.|||-|=+-.-.. -.+..| ..+.++.+++.+++||+.+ |.|
T Consensus 111 ~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~~iPvvAIGGI~~--------------- 175 (221)
T PRK06512 111 MIVGFGNLRDRHGAMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMIEIPCIVQAGSDL--------------- 175 (221)
T ss_pred CEEEecCCCCHHHHHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhCCCCEEEEeCCCH---------------
Confidence 45676 67899999999999999998865321 112222 4678888888889999887 455
Q ss_pred HHHHHHHHHHcCCCEEEE-eeecCCCCcCHHHHHHHHHHhC
Q psy7930 84 MALDCHQFVESGADGFVI-GALTGEQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 84 M~~dI~~~~~~GadG~Vf-G~L~~dg~iD~~~~~~Li~~a~ 123 (146)
+++..+++.||+||.+ +.+..... -..+.++|.+...
T Consensus 176 --~n~~~~~~~GA~giAvisai~~~~d-p~~a~~~~~~~~~ 213 (221)
T PRK06512 176 --ASAVEVAETGAEFVALERAVFDAHD-PPLAVAQANALLD 213 (221)
T ss_pred --HHHHHHHHhCCCEEEEhHHhhCCCC-HHHHHHHHHHHHh
Confidence 7889999999999854 44443221 2345566666554
No 36
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=96.20 E-value=0.052 Score=43.06 Aligned_cols=76 Identities=20% Similarity=0.170 Sum_probs=52.4
Q ss_pred eEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930 12 LEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMALDCH 89 (146)
Q Consensus 12 lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~ 89 (146)
.-+++.+.+++..+.+.|++.+=+. +-...-+-|....++++++.+ ++||.+. || -. | .+|++
T Consensus 124 ~~v~v~~~~e~~~~~~~g~~~i~~t-~~~~~~~~~~~~~~~~l~~~~~~~~pvia~-----gG-I~-s-------~edi~ 188 (217)
T cd00331 124 VLVEVHDEEELERALALGAKIIGIN-NRDLKTFEVDLNTTERLAPLIPKDVILVSE-----SG-IS-T-------PEDVK 188 (217)
T ss_pred EEEEECCHHHHHHHHHcCCCEEEEe-CCCccccCcCHHHHHHHHHhCCCCCEEEEE-----cC-CC-C-------HHHHH
Confidence 3456789999999999999999443 222122335677888888763 5666442 33 11 2 26788
Q ss_pred HHHHcCCCEEEEe
Q psy7930 90 QFVESGADGFVIG 102 (146)
Q Consensus 90 ~~~~~GadG~VfG 102 (146)
.++++|+||+++|
T Consensus 189 ~~~~~Ga~gvivG 201 (217)
T cd00331 189 RLAEAGADAVLIG 201 (217)
T ss_pred HHHHcCCCEEEEC
Confidence 8899999999998
No 37
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=96.17 E-value=0.033 Score=47.85 Aligned_cols=81 Identities=26% Similarity=0.294 Sum_probs=61.9
Q ss_pred ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930 10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH 89 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~ 89 (146)
..+||=|+|++++..|.++|||.|=|- + .|.+.++++.+..+- ++.|-- .|| +=.+.|+
T Consensus 209 ~kIeVEv~sleea~ea~~~gaDiI~LD-n-------~s~e~~~~av~~~~~--~~~iea-SGG----------I~~~ni~ 267 (296)
T PRK09016 209 VPVEVEVENLDELDQALKAGADIIMLD-N-------FTTEQMREAVKRTNG--RALLEV-SGN----------VTLETLR 267 (296)
T ss_pred CCEEEEeCCHHHHHHHHHcCCCEEEeC-C-------CChHHHHHHHHhhcC--CeEEEE-ECC----------CCHHHHH
Confidence 358999999999999999999999664 3 355888888875532 445665 555 2236788
Q ss_pred HHHHcCCCEEEEeeecCCC-CcC
Q psy7930 90 QFVESGADGFVIGALTGEQ-EID 111 (146)
Q Consensus 90 ~~~~~GadG~VfG~L~~dg-~iD 111 (146)
.+.+.|+|.|+.|.|+.+- .+|
T Consensus 268 ~yA~tGVD~Is~galthsa~~lD 290 (296)
T PRK09016 268 EFAETGVDFISVGALTKHVQALD 290 (296)
T ss_pred HHHhcCCCEEEeCccccCCCccc
Confidence 9999999999999999764 244
No 38
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.11 E-value=0.029 Score=47.68 Aligned_cols=83 Identities=28% Similarity=0.344 Sum_probs=61.0
Q ss_pred ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC---CCcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930 10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV---LVPVFVMIRVRAGFDFVFSQAEKEIMAL 86 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~---~ipv~vMIRP~R~gdF~Ys~~E~~~M~~ 86 (146)
..+||=|+|++++..|.++|||.|=| +++ |...++++.+.. +.+-++.|-- .|| - + .+
T Consensus 183 ~kIeVEv~~leea~~a~~agaDiI~L-Dn~-------~~e~l~~~v~~l~~~~~~~~~~lea-SGG-I--~-------~~ 243 (278)
T PRK08385 183 KVVEVEVESLEDALKAAKAGADIIML-DNM-------TPEEIREVIEALKREGLRERVKIEV-SGG-I--T-------PE 243 (278)
T ss_pred CcEEEEeCCHHHHHHHHHcCcCEEEE-CCC-------CHHHHHHHHHHHHhcCcCCCEEEEE-ECC-C--C-------HH
Confidence 45899999999999999999997754 444 677888777754 1122455666 566 2 2 35
Q ss_pred HHHHHHHcCCCEEEEeeecCC-CCcC
Q psy7930 87 DCHQFVESGADGFVIGALTGE-QEID 111 (146)
Q Consensus 87 dI~~~~~~GadG~VfG~L~~d-g~iD 111 (146)
.|+.+.+.|+|.|+.|.|+-+ ..+|
T Consensus 244 ni~~yA~tGvD~Is~galt~sa~~~D 269 (278)
T PRK08385 244 NIEEYAKLDVDVISLGALTHSVRNFD 269 (278)
T ss_pred HHHHHHHcCCCEEEeChhhcCCCccc
Confidence 678899999999999999974 3355
No 39
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=96.10 E-value=0.0045 Score=48.82 Aligned_cols=78 Identities=22% Similarity=0.258 Sum_probs=57.2
Q ss_pred eeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC-CcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930 11 TLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL-VPVFVMIRVRAGFDFVFSQAEKEIMALDCH 89 (146)
Q Consensus 11 ~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~-ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~ 89 (146)
.+||-++|.+++..|.+.|+|.|=|-. +|++.++++.+.+. ++-++.|-- .|| ..- +.|.
T Consensus 82 ~I~VEv~~~ee~~ea~~~g~d~I~lD~--------~~~~~~~~~v~~l~~~~~~v~ie~-SGG-I~~---------~ni~ 142 (169)
T PF01729_consen 82 KIEVEVENLEEAEEALEAGADIIMLDN--------MSPEDLKEAVEELRELNPRVKIEA-SGG-ITL---------ENIA 142 (169)
T ss_dssp EEEEEESSHHHHHHHHHTT-SEEEEES---------CHHHHHHHHHHHHHHTTTSEEEE-ESS-SST---------TTHH
T ss_pred eEEEEcCCHHHHHHHHHhCCCEEEecC--------cCHHHHHHHHHHHhhcCCcEEEEE-ECC-CCH---------HHHH
Confidence 499999999999999999999998763 47788988887431 222255555 444 442 4678
Q ss_pred HHHHcCCCEEEEeeecCC
Q psy7930 90 QFVESGADGFVIGALTGE 107 (146)
Q Consensus 90 ~~~~~GadG~VfG~L~~d 107 (146)
.+.+.|+|.+++|.|+-+
T Consensus 143 ~ya~~gvD~isvg~~~~~ 160 (169)
T PF01729_consen 143 EYAKTGVDVISVGSLTHS 160 (169)
T ss_dssp HHHHTT-SEEEECHHHHS
T ss_pred HHHhcCCCEEEcChhhcC
Confidence 889999999999998654
No 40
>PRK06852 aldolase; Validated
Probab=95.96 E-value=0.057 Score=46.57 Aligned_cols=103 Identities=11% Similarity=-0.022 Sum_probs=70.6
Q ss_pred HHHHHHcC------CCEEEecCCCCCCCCCCCHHHHHHHHh------hCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930 22 ALAAVRGG------ADRLELCAALSEGGLTPTLGLYRVIKR------LVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH 89 (146)
Q Consensus 22 a~~A~~~G------AdRIELc~~l~~GGlTPS~g~i~~~~~------~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~ 89 (146)
+..|.+.| ||=+=.-- ..|+ ......++.+.+ ..++|+.+|+-| ||.... ++.+.+.+..-.+
T Consensus 121 VeeAvrlG~~~~~~AdAV~v~v--~~Gs-~~E~~ml~~l~~v~~ea~~~GlPll~~~yp-rG~~i~-~~~~~~~ia~aaR 195 (304)
T PRK06852 121 VEQVVEFKENSGLNILGVGYTI--YLGS-EYESEMLSEAAQIIYEAHKHGLIAVLWIYP-RGKAVK-DEKDPHLIAGAAG 195 (304)
T ss_pred HHHHHhcCCccCCCceEEEEEE--ecCC-HHHHHHHHHHHHHHHHHHHhCCcEEEEeec-cCcccC-CCccHHHHHHHHH
Confidence 44477777 66655443 3442 122333333322 348999999999 988662 4445567888889
Q ss_pred HHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEE
Q psy7930 90 QFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITF 129 (146)
Q Consensus 90 ~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtF 129 (146)
.+.++|||=|=.-.-+.++.=|.+.++++++.|++.||.|
T Consensus 196 iaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g~vpVvi 235 (304)
T PRK06852 196 VAACLGADFVKVNYPKKEGANPAELFKEAVLAAGRTKVVC 235 (304)
T ss_pred HHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCCCCcEEE
Confidence 9999999987776655555567899999999887777765
No 41
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=95.89 E-value=0.067 Score=44.07 Aligned_cols=83 Identities=28% Similarity=0.310 Sum_probs=54.8
Q ss_pred eeEEEecCHHH----HHHHHHcCCCEEEecCCCC-CCC-----CCC--CHHHHHHHHhhCCCcEEEEEccCCCCCcccCH
Q psy7930 11 TLEVCVDSVAS----ALAAVRGGADRLELCAALS-EGG-----LTP--TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQ 78 (146)
Q Consensus 11 ~lEvcv~s~~~----a~~A~~~GAdRIELc~~l~-~GG-----lTP--S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~ 78 (146)
++=+...+.++ +..+++.|+|-|||+-+-. .++ ..| ...+++.+++.+++||.|=++| - .+.
T Consensus 102 i~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~-~-----~~~ 175 (289)
T cd02810 102 IASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP-Y-----FDL 175 (289)
T ss_pred EEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCC-C-----CCH
Confidence 45565556655 5566677999999974321 111 122 2356777888778998777777 2 233
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930 79 AEKEIMALDCHQFVESGADGFVIG 102 (146)
Q Consensus 79 ~E~~~M~~dI~~~~~~GadG~VfG 102 (146)
+.+.+-++.+.++|+|++++-
T Consensus 176 ---~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 176 ---EDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred ---HHHHHHHHHHHHcCCCEEEEE
Confidence 345667778899999999973
No 42
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=95.89 E-value=0.11 Score=41.32 Aligned_cols=79 Identities=24% Similarity=0.349 Sum_probs=55.8
Q ss_pred ceeEEEecCHHHHHHHHHcCCCEEEecC-CCCC---CCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHH
Q psy7930 10 TTLEVCVDSVASALAAVRGGADRLELCA-ALSE---GGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMA 85 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~-~l~~---GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~ 85 (146)
+.+=+++.|.+++..+.+.|+|-|-... ++.. +...|....++.+++.+++||.+ -|| .. +.
T Consensus 124 ~~iiv~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia-----~GG-I~-~~------- 189 (219)
T cd04729 124 CLLMADISTLEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIA-----EGR-IN-SP------- 189 (219)
T ss_pred CeEEEECCCHHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEE-----eCC-CC-CH-------
Confidence 4445678999999999999999884321 1111 11235678999999888899864 244 21 22
Q ss_pred HHHHHHHHcCCCEEEEe
Q psy7930 86 LDCHQFVESGADGFVIG 102 (146)
Q Consensus 86 ~dI~~~~~~GadG~VfG 102 (146)
+|++.+.++|+||+.+|
T Consensus 190 ~~~~~~l~~GadgV~vG 206 (219)
T cd04729 190 EQAAKALELGADAVVVG 206 (219)
T ss_pred HHHHHHHHCCCCEEEEc
Confidence 67778888999999998
No 43
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=95.87 E-value=0.12 Score=42.47 Aligned_cols=88 Identities=20% Similarity=0.215 Sum_probs=65.3
Q ss_pred HHHHHHHHHcCCCEEEecCCCCCCCC--CCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC-
Q psy7930 19 VASALAAVRGGADRLELCAALSEGGL--TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG- 95 (146)
Q Consensus 19 ~~~a~~A~~~GAdRIELc~~l~~GGl--TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G- 95 (146)
.+-+....+.|++.|.+-+ ....|+ -|.+.+++++++.+++||.+ .||-. |. +|+..+.+.|
T Consensus 158 ~~~~~~l~~~G~~~iivt~-i~~~g~~~g~~~~~~~~i~~~~~ipvia-----~GGi~--s~-------~di~~~~~~g~ 222 (254)
T TIGR00735 158 VEWAKEVEKLGAGEILLTS-MDKDGTKSGYDLELTKAVSEAVKIPVIA-----SGGAG--KP-------EHFYEAFTKGK 222 (254)
T ss_pred HHHHHHHHHcCCCEEEEeC-cCcccCCCCCCHHHHHHHHHhCCCCEEE-----eCCCC--CH-------HHHHHHHHcCC
Confidence 4556778889999999943 344443 35688999999988889754 35533 23 4555666667
Q ss_pred CCEEEEeeecCCCCcCHHHHHHHHHH
Q psy7930 96 ADGFVIGALTGEQEIDIEFIRQLKTI 121 (146)
Q Consensus 96 adG~VfG~L~~dg~iD~~~~~~Li~~ 121 (146)
+||+++|-+--+|.++.+.+++.++.
T Consensus 223 ~dgv~~g~a~~~~~~~~~~~~~~~~~ 248 (254)
T TIGR00735 223 ADAALAASVFHYREITIGEVKEYLAE 248 (254)
T ss_pred cceeeEhHHHhCCCCCHHHHHHHHHH
Confidence 99999999988999999988888774
No 44
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=95.85 E-value=0.31 Score=39.34 Aligned_cols=109 Identities=12% Similarity=0.105 Sum_probs=64.9
Q ss_pred HHHHHHHHcCCCEEEecCCCC---CCCCCC-CHHHHHHHHhhCCCcEEEEEccCCCCCccc----C-H----HHHHHHHH
Q psy7930 20 ASALAAVRGGADRLELCAALS---EGGLTP-TLGLYRVIKRLVLVPVFVMIRVRAGFDFVF----S-Q----AEKEIMAL 86 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~---~GGlTP-S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Y----s-~----~E~~~M~~ 86 (146)
+.+..|.+.|.+.|||-.... .-.+++ ...-+++..+..+++|..+-.. . +.|.| . + .-++.+++
T Consensus 17 ~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~-~-~~~~~~~~~~~~~~r~~~~~~~~~ 94 (275)
T PRK09856 17 HAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPE-T-NGYPYNMMLGDEHMRRESLDMIKL 94 (275)
T ss_pred HHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCc-c-cCcCccccCCCHHHHHHHHHHHHH
Confidence 567778999999999942110 001111 1334455555668888654332 2 22222 2 2 23568888
Q ss_pred HHHHHHHcCCCEEEEeeecCCCCcCH--------HHHHHHHHHhC--CCCeEEe
Q psy7930 87 DCHQFVESGADGFVIGALTGEQEIDI--------EFIRQLKTIIG--DRPITFH 130 (146)
Q Consensus 87 dI~~~~~~GadG~VfG~L~~dg~iD~--------~~~~~Li~~a~--~~~vtFH 130 (146)
-|+.++.+|++-+|+........-+. +.+++|.+.|. |+.+.||
T Consensus 95 ~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 95 AMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 89999999999999976533221122 24777777776 5666665
No 45
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=95.80 E-value=0.071 Score=45.69 Aligned_cols=84 Identities=26% Similarity=0.366 Sum_probs=67.2
Q ss_pred ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930 10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH 89 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~ 89 (146)
.++||=|+|++++..|.++|||-|=| +|+ |...++++.+..+++=++++-- .|| +=.+.|.
T Consensus 189 ~kIEVEvesle~~~eAl~agaDiImL-DNm-------~~e~~~~av~~l~~~~~~~lEa-SGg----------It~~ni~ 249 (280)
T COG0157 189 KKIEVEVESLEEAEEALEAGADIIML-DNM-------SPEELKEAVKLLGLAGRALLEA-SGG----------ITLENIR 249 (280)
T ss_pred ceEEEEcCCHHHHHHHHHcCCCEEEe-cCC-------CHHHHHHHHHHhccCCceEEEE-eCC----------CCHHHHH
Confidence 35899999999999999999998855 554 3477888887766666888888 666 2236789
Q ss_pred HHHHcCCCEEEEeeecCCCC-cCH
Q psy7930 90 QFVESGADGFVIGALTGEQE-IDI 112 (146)
Q Consensus 90 ~~~~~GadG~VfG~L~~dg~-iD~ 112 (146)
.+.+.|+|-|..|+||-.-. +|.
T Consensus 250 ~yA~tGVD~IS~galths~~~lDi 273 (280)
T COG0157 250 EYAETGVDVISVGALTHSAPALDI 273 (280)
T ss_pred HHhhcCCCEEEeCccccCCcccce
Confidence 99999999999999997654 553
No 46
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=95.76 E-value=0.13 Score=41.54 Aligned_cols=91 Identities=22% Similarity=0.223 Sum_probs=64.7
Q ss_pred EecCHHHHHHHHHcCCCEEEecCCCCCCCC--CCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHH
Q psy7930 15 CVDSVASALAAVRGGADRLELCAALSEGGL--TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFV 92 (146)
Q Consensus 15 cv~s~~~a~~A~~~GAdRIELc~~l~~GGl--TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~ 92 (146)
-.+..+-+..+.+.|++.|.+-. ....|+ -+...+++++++..++||.+ -||=+ |. +|+..+.
T Consensus 148 ~~~~~~~~~~l~~~G~d~i~v~~-i~~~g~~~g~~~~~i~~i~~~~~~pvia-----~GGi~--~~-------~di~~~l 212 (243)
T cd04731 148 GLDAVEWAKEVEELGAGEILLTS-MDRDGTKKGYDLELIRAVSSAVNIPVIA-----SGGAG--KP-------EHFVEAF 212 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEec-cCCCCCCCCCCHHHHHHHHhhCCCCEEE-----eCCCC--CH-------HHHHHHH
Confidence 34455677889999999999865 223332 25678899999888899754 35522 23 4566666
Q ss_pred Hc-CCCEEEEeeecCCCCcCHHHHHHHHH
Q psy7930 93 ES-GADGFVIGALTGEQEIDIEFIRQLKT 120 (146)
Q Consensus 93 ~~-GadG~VfG~L~~dg~iD~~~~~~Li~ 120 (146)
+. |+||+++|-.--+|.++...+++++.
T Consensus 213 ~~~g~dgv~vg~al~~~~~~~~~~~~~~~ 241 (243)
T cd04731 213 EEGGADAALAASIFHFGEYTIAELKEYLA 241 (243)
T ss_pred HhCCCCEEEEeHHHHcCCCCHHHHHHHHh
Confidence 65 99999999887789999887666543
No 47
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=95.76 E-value=0.32 Score=38.53 Aligned_cols=104 Identities=13% Similarity=0.139 Sum_probs=68.9
Q ss_pred ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCC-cEEEEEccCCCCCccc------CHHHHHHHHHHH
Q psy7930 16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLV-PVFVMIRVRAGFDFVF------SQAEKEIMALDC 88 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~i-pv~vMIRP~R~gdF~Y------s~~E~~~M~~dI 88 (146)
+.|++++..+.+.|||++=+-+.+. .+..+++++.+..+- +|.+-|-- +.|.+.. ++.+.. +=+
T Consensus 82 I~~~e~~~~~~~~Gad~vvigs~~l-----~dp~~~~~i~~~~g~~~i~~sid~-~~~~~~~~~~~~~~~~~~~---~~~ 152 (234)
T cd04732 82 IRSLEDIERLLDLGVSRVIIGTAAV-----KNPELVKELLKEYGGERIVVGLDA-KDGKVATKGWLETSEVSLE---ELA 152 (234)
T ss_pred cCCHHHHHHHHHcCCCEEEECchHH-----hChHHHHHHHHHcCCceEEEEEEe-eCCEEEECCCeeecCCCHH---HHH
Confidence 4678999999999999997766542 356778888877643 55554433 3322211 111111 225
Q ss_pred HHHHHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeEE
Q psy7930 89 HQFVESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPITF 129 (146)
Q Consensus 89 ~~~~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vtF 129 (146)
+.+.+.|++++++.-++.+|. .|.+.++++.+.. +.|+..
T Consensus 153 ~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~-~ipvi~ 195 (234)
T cd04732 153 KRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAAT-GIPVIA 195 (234)
T ss_pred HHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHhc-CCCEEE
Confidence 667889999999998887753 7899999988765 355543
No 48
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=95.71 E-value=0.057 Score=46.31 Aligned_cols=76 Identities=24% Similarity=0.301 Sum_probs=56.5
Q ss_pred EecCHHHHHHHHHcCCCEEEe-------cC-CCCCCCCCCCHHHHHHHHhhC---CCcEEEEEccCCCCCcccCHHHHHH
Q psy7930 15 CVDSVASALAAVRGGADRLEL-------CA-ALSEGGLTPTLGLYRVIKRLV---LVPVFVMIRVRAGFDFVFSQAEKEI 83 (146)
Q Consensus 15 cv~s~~~a~~A~~~GAdRIEL-------c~-~l~~GGlTPS~g~i~~~~~~~---~ipv~vMIRP~R~gdF~Ys~~E~~~ 83 (146)
.+.|.+.+..+.+.|||-|-. |. ....|+-.|...++..+.+.. ++||. + .|+..+.
T Consensus 142 ~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVI----A--~GGI~~~------ 209 (325)
T cd00381 142 NVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVI----A--DGGIRTS------ 209 (325)
T ss_pred CCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEE----e--cCCCCCH------
Confidence 368889999999999999986 32 233456678888888777654 58864 5 3445544
Q ss_pred HHHHHHHHHHcCCCEEEEeee
Q psy7930 84 MALDCHQFVESGADGFVIGAL 104 (146)
Q Consensus 84 M~~dI~~~~~~GadG~VfG~L 104 (146)
.||..+.++||+++.+|=+
T Consensus 210 --~di~kAla~GA~~VmiGt~ 228 (325)
T cd00381 210 --GDIVKALAAGADAVMLGSL 228 (325)
T ss_pred --HHHHHHHHcCCCEEEecch
Confidence 6888888999999999743
No 49
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=95.67 E-value=0.096 Score=43.43 Aligned_cols=81 Identities=25% Similarity=0.350 Sum_probs=52.8
Q ss_pred ceeEEEecCHHH----HHHHHHcCCCEEEecCC---CCCC----CCCCC--HHHHHHHHhhCCCcEEEEEccCCCCCccc
Q psy7930 10 TTLEVCVDSVAS----ALAAVRGGADRLELCAA---LSEG----GLTPT--LGLYRVIKRLVLVPVFVMIRVRAGFDFVF 76 (146)
Q Consensus 10 ~~lEvcv~s~~~----a~~A~~~GAdRIELc~~---l~~G----GlTPS--~g~i~~~~~~~~ipv~vMIRP~R~gdF~Y 76 (146)
+++-++..+.++ |..+++.|+|-|||+-. ...+ |-+|. ..+++.+++.+++||.|=|+| ..
T Consensus 92 ~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~-~~----- 165 (296)
T cd04740 92 VIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP-NV----- 165 (296)
T ss_pred EEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC-Cc-----
Confidence 456677766655 44556679999999632 1111 22332 246777777779999888888 21
Q ss_pred CHHHHHHHHHHHHHHHHcCCCEEEE
Q psy7930 77 SQAEKEIMALDCHQFVESGADGFVI 101 (146)
Q Consensus 77 s~~E~~~M~~dI~~~~~~GadG~Vf 101 (146)
+.+.+-++.+.++|+|++++
T Consensus 166 -----~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 166 -----TDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred -----hhHHHHHHHHHHcCCCEEEE
Confidence 12444456788999999976
No 50
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=95.64 E-value=0.17 Score=39.23 Aligned_cols=82 Identities=23% Similarity=0.284 Sum_probs=55.4
Q ss_pred ceeE-EEecCHHHHHHHHHcCCCEEEecCCC--CCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930 10 TTLE-VCVDSVASALAAVRGGADRLELCAAL--SEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMAL 86 (146)
Q Consensus 10 ~~lE-vcv~s~~~a~~A~~~GAdRIELc~~l--~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~ 86 (146)
+.++ ....|.+++..+.+.|+|-+=+.-.. ...|...+...++++++..++|+.+ -|| - |. +
T Consensus 106 ~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~-----~GG-I--~~-------~ 170 (202)
T cd04726 106 VQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAV-----AGG-I--TP-------D 170 (202)
T ss_pred EEEEEeCCCCHHHHHHHHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhhcCCCEEE-----ECC-c--CH-------H
Confidence 4455 67789999999999999987773211 1222345677888887765666644 233 1 21 3
Q ss_pred HHHHHHHcCCCEEEEee-ecC
Q psy7930 87 DCHQFVESGADGFVIGA-LTG 106 (146)
Q Consensus 87 dI~~~~~~GadG~VfG~-L~~ 106 (146)
++..+.+.|||++|+|= |..
T Consensus 171 ~i~~~~~~Gad~vvvGsai~~ 191 (202)
T cd04726 171 TLPEFKKAGADIVIVGRAITG 191 (202)
T ss_pred HHHHHHhcCCCEEEEeehhcC
Confidence 68899999999999995 443
No 51
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=95.57 E-value=0.58 Score=37.98 Aligned_cols=112 Identities=13% Similarity=0.014 Sum_probs=66.8
Q ss_pred HHHHHHHHcCCCEEEecCCCCC---C--CCCCC-HHHHHHHHhhCCCcEEEEEccC-CCCCcccC-----HHHHHHHHHH
Q psy7930 20 ASALAAVRGGADRLELCAALSE---G--GLTPT-LGLYRVIKRLVLVPVFVMIRVR-AGFDFVFS-----QAEKEIMALD 87 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~---G--GlTPS-~g~i~~~~~~~~ipv~vMIRP~-R~gdF~Ys-----~~E~~~M~~d 87 (146)
+.+..+.+.|.+-|||...-.. . +.+|. ...++...+..++.|..+.-.. ..-+|.-+ +..++.+++-
T Consensus 25 e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 104 (283)
T PRK13209 25 EKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIMRKA 104 (283)
T ss_pred HHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHHHHHH
Confidence 4566778999999999632100 1 12331 3345555556788887654220 11122222 2346678899
Q ss_pred HHHHHHcCCCEEEEeeecCCCCcC--------HHHHHHHHHHhC--CCCeEEee
Q psy7930 88 CHQFVESGADGFVIGALTGEQEID--------IEFIRQLKTIIG--DRPITFHR 131 (146)
Q Consensus 88 I~~~~~~GadG~VfG~L~~dg~iD--------~~~~~~Li~~a~--~~~vtFHR 131 (146)
|+.++++|++-++++--+..-..+ .+.+++|.+.|+ |+.+.+|-
T Consensus 105 i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~ 158 (283)
T PRK13209 105 IQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEI 158 (283)
T ss_pred HHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEee
Confidence 999999999999886432111122 446677888775 67777764
No 52
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.51 E-value=0.098 Score=44.88 Aligned_cols=82 Identities=27% Similarity=0.255 Sum_probs=61.7
Q ss_pred ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930 10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH 89 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~ 89 (146)
..+||=|+|++++..|.++|||.|=|- |+ |+..++++.+..+- .+.|-- .|| +=.+.|+
T Consensus 198 ~kIeVEv~tleea~~a~~agaDiImLD-nm-------spe~l~~av~~~~~--~~~lea-SGG----------I~~~ni~ 256 (290)
T PRK06559 198 KMVEVEVESLAAAEEAAAAGADIIMLD-NM-------SLEQIEQAITLIAG--RSRIEC-SGN----------IDMTTIS 256 (290)
T ss_pred CeEEEECCCHHHHHHHHHcCCCEEEEC-CC-------CHHHHHHHHHHhcC--ceEEEE-ECC----------CCHHHHH
Confidence 358888899999999999999999664 33 56677777765432 345555 455 2236788
Q ss_pred HHHHcCCCEEEEeeecC-CCCcCH
Q psy7930 90 QFVESGADGFVIGALTG-EQEIDI 112 (146)
Q Consensus 90 ~~~~~GadG~VfG~L~~-dg~iD~ 112 (146)
.+.+.|+|.++.|+|+- -..+|.
T Consensus 257 ~yA~tGVD~Is~galthsa~~~Di 280 (290)
T PRK06559 257 RFRGLAIDYVSSGSLTHSAKSLDF 280 (290)
T ss_pred HHHhcCCCEEEeCccccCCcccce
Confidence 89999999999999997 445665
No 53
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=95.47 E-value=0.17 Score=42.10 Aligned_cols=80 Identities=19% Similarity=0.186 Sum_probs=55.0
Q ss_pred eEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC--CcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930 12 LEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL--VPVFVMIRVRAGFDFVFSQAEKEIMALDCH 89 (146)
Q Consensus 12 lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~--ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~ 89 (146)
.=|++.|.+++..|.+.||+-|=++. -...-..|......++.+... +|+.. = +| . .|. +|++
T Consensus 163 ~lvevh~~~E~~~A~~~gadiIgin~-rdl~~~~~d~~~~~~l~~~~p~~~~vIa---e--gG-I-~t~-------ed~~ 227 (260)
T PRK00278 163 VLVEVHDEEELERALKLGAPLIGINN-RNLKTFEVDLETTERLAPLIPSDRLVVS---E--SG-I-FTP-------EDLK 227 (260)
T ss_pred EEEEeCCHHHHHHHHHcCCCEEEECC-CCcccccCCHHHHHHHHHhCCCCCEEEE---E--eC-C-CCH-------HHHH
Confidence 33567799999999999999988763 334455677888887777542 22222 2 23 1 122 6788
Q ss_pred HHHHcCCCEEEEe-eecC
Q psy7930 90 QFVESGADGFVIG-ALTG 106 (146)
Q Consensus 90 ~~~~~GadG~VfG-~L~~ 106 (146)
.++++|+|||++| .++.
T Consensus 228 ~~~~~Gad~vlVGsaI~~ 245 (260)
T PRK00278 228 RLAKAGADAVLVGESLMR 245 (260)
T ss_pred HHHHcCCCEEEECHHHcC
Confidence 8999999999998 3443
No 54
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=95.44 E-value=0.21 Score=41.49 Aligned_cols=98 Identities=24% Similarity=0.263 Sum_probs=71.5
Q ss_pred ceeEEEecCHH------------HHHHHHHcCCCEEEecCCC-CCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCccc
Q psy7930 10 TTLEVCVDSVA------------SALAAVRGGADRLELCAAL-SEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVF 76 (146)
Q Consensus 10 ~~lEvcv~s~~------------~a~~A~~~GAdRIELc~~l-~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Y 76 (146)
++-|+..-|+. =|...+++||+=|-....- ..|| |+..++.+++.+++||. |. ||.-
T Consensus 52 vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlte~~~f~g---~~~~l~~v~~~v~iPvl---~k----dfi~ 121 (260)
T PRK00278 52 VIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLTDERFFQG---SLEYLRAARAAVSLPVL---RK----DFII 121 (260)
T ss_pred EEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEecccccCCC---CHHHHHHHHHhcCCCEE---ee----eecC
Confidence 46688776654 3677889999999665432 2233 28999999999999986 34 5877
Q ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeE
Q psy7930 77 SQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPIT 128 (146)
Q Consensus 77 s~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vt 128 (146)
++.+ |..++++|||++.+.+=. ++.+.+++|++.|+.+...
T Consensus 122 ~~~q-------i~~a~~~GAD~VlLi~~~----l~~~~l~~li~~a~~lGl~ 162 (260)
T PRK00278 122 DPYQ-------IYEARAAGADAILLIVAA----LDDEQLKELLDYAHSLGLD 162 (260)
T ss_pred CHHH-------HHHHHHcCCCEEEEEecc----CCHHHHHHHHHHHHHcCCe
Confidence 7553 677899999999998633 3457999999999854433
No 55
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=95.43 E-value=0.098 Score=44.64 Aligned_cols=84 Identities=20% Similarity=0.226 Sum_probs=61.7
Q ss_pred ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC-CcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930 10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL-VPVFVMIRVRAGFDFVFSQAEKEIMALDC 88 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~-ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI 88 (146)
..+||=++|++++..|.+.|||.|-| +++ |...++++.+..+ .--++.|-- .|| = =.+.|
T Consensus 190 ~kIeVEv~tleqa~ea~~agaDiI~L-Dn~-------~~e~l~~av~~~~~~~~~~~lea-SGG-I---------~~~ni 250 (284)
T PRK06096 190 KKIVVEADTPKEAIAALRAQPDVLQL-DKF-------SPQQATEIAQIAPSLAPHCTLSL-AGG-I---------NLNTL 250 (284)
T ss_pred CCEEEECCCHHHHHHHHHcCCCEEEE-CCC-------CHHHHHHHHHHhhccCCCeEEEE-ECC-C---------CHHHH
Confidence 35888899999999999999999988 332 5567777766432 111345555 455 2 24778
Q ss_pred HHHHHcCCCEEEEeeecCCCCcCH
Q psy7930 89 HQFVESGADGFVIGALTGEQEIDI 112 (146)
Q Consensus 89 ~~~~~~GadG~VfG~L~~dg~iD~ 112 (146)
+.+.+.|+|.++.|+|+....+|.
T Consensus 251 ~~yA~tGvD~Is~gal~~a~~~Di 274 (284)
T PRK06096 251 KNYADCGIRLFITSAPYYAAPADI 274 (284)
T ss_pred HHHHhcCCCEEEECccccCCCcCe
Confidence 999999999999999987666664
No 56
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=95.37 E-value=0.18 Score=41.54 Aligned_cols=54 Identities=24% Similarity=0.341 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeecCC
Q psy7930 45 TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGE 107 (146)
Q Consensus 45 TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~d 107 (146)
+|...+++...+..++|++...-| |. | ++|++.+. +.+++.|++|+|||.+..+
T Consensus 44 ~~~~~~~~~qA~algiPl~~~~~~---~~--~-e~~~~~l~---~~l~~~gv~~vv~GdI~s~ 97 (222)
T TIGR00289 44 SPNLHLTDLVAEAVGIPLIKLYTS---GE--E-EKEVEDLA---GQLGELDVEALCIGAIESN 97 (222)
T ss_pred cCCHHHHHHHHHHcCCCeEEEEcC---Cc--h-hHHHHHHH---HHHHHcCCCEEEECccccH
Confidence 677889988889999998555444 21 3 55555554 4457789999999999754
No 57
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=95.36 E-value=0.22 Score=39.69 Aligned_cols=75 Identities=23% Similarity=0.296 Sum_probs=52.2
Q ss_pred EEecCHHHHHHHHHcCCCEEEecC-CCCC---CCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930 14 VCVDSVASALAAVRGGADRLELCA-ALSE---GGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH 89 (146)
Q Consensus 14 vcv~s~~~a~~A~~~GAdRIELc~-~l~~---GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~ 89 (146)
+.+.|.+++..+.+.|+|-|-... ++.. .-..+...+++++++.+++||.+. || .. +. +|+.
T Consensus 124 ~~v~t~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~-----GG-I~-t~-------~~~~ 189 (221)
T PRK01130 124 ADCSTLEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAE-----GR-IN-TP-------EQAK 189 (221)
T ss_pred EeCCCHHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEE-----CC-CC-CH-------HHHH
Confidence 456789999999999999874421 1110 112334788999998888997653 33 21 22 6777
Q ss_pred HHHHcCCCEEEEe
Q psy7930 90 QFVESGADGFVIG 102 (146)
Q Consensus 90 ~~~~~GadG~VfG 102 (146)
.+.++|+|||.+|
T Consensus 190 ~~l~~GadgV~iG 202 (221)
T PRK01130 190 KALELGAHAVVVG 202 (221)
T ss_pred HHHHCCCCEEEEc
Confidence 7888999999999
No 58
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.35 E-value=0.11 Score=44.65 Aligned_cols=77 Identities=27% Similarity=0.350 Sum_probs=59.4
Q ss_pred ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930 10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH 89 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~ 89 (146)
..+||=|+|++++..|.++|||.|=|- |+ |+..++++.+..+- ++.|-- .|| =. .+.|.
T Consensus 206 ~kIeVEvetleea~eA~~aGaDiImLD-nm-------spe~l~~av~~~~~--~~~lEa-SGG-It---------~~ni~ 264 (294)
T PRK06978 206 VPVQIEVETLAQLETALAHGAQSVLLD-NF-------TLDMMREAVRVTAG--RAVLEV-SGG-VN---------FDTVR 264 (294)
T ss_pred CcEEEEcCCHHHHHHHHHcCCCEEEEC-CC-------CHHHHHHHHHhhcC--CeEEEE-ECC-CC---------HHHHH
Confidence 469999999999999999999999654 43 55677777765432 445666 455 22 46788
Q ss_pred HHHHcCCCEEEEeeecCC
Q psy7930 90 QFVESGADGFVIGALTGE 107 (146)
Q Consensus 90 ~~~~~GadG~VfG~L~~d 107 (146)
.+.+.|+|.++.|+|+-+
T Consensus 265 ~yA~tGVD~IS~galths 282 (294)
T PRK06978 265 AFAETGVDRISIGALTKD 282 (294)
T ss_pred HHHhcCCCEEEeCccccC
Confidence 999999999999999975
No 59
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=95.32 E-value=0.21 Score=39.72 Aligned_cols=107 Identities=15% Similarity=0.213 Sum_probs=68.4
Q ss_pred ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC-CcEEEEEccCCCCCcccCH-HHH--HHHHHHHHHH
Q psy7930 16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL-VPVFVMIRVRAGFDFVFSQ-AEK--EIMALDCHQF 91 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~-ipv~vMIRP~R~gdF~Ys~-~E~--~~M~~dI~~~ 91 (146)
+.+.+++..+.+.||+++=|-+.+. .+...++++.+..+ -+|.+-|-. |.|...... .+. .--.+=++.+
T Consensus 81 I~~~ed~~~~~~~Ga~~vvlgs~~l-----~d~~~~~~~~~~~g~~~i~~sid~-~~~~v~~~g~~~~~~~~~~~~~~~~ 154 (230)
T TIGR00007 81 IRSLEDVEKLLDLGVDRVIIGTAAV-----ENPDLVKELLKEYGPERIVVSLDA-RGGEVAVKGWLEKSEVSLEELAKRL 154 (230)
T ss_pred cCCHHHHHHHHHcCCCEEEEChHHh-----hCHHHHHHHHHHhCCCcEEEEEEE-ECCEEEEcCCcccCCCCHHHHHHHH
Confidence 4688999999999999996554332 24566777777664 345555555 444211100 000 0011234567
Q ss_pred HHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeEE
Q psy7930 92 VESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPITF 129 (146)
Q Consensus 92 ~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vtF 129 (146)
.++|++++++.-++.+|. .|.+.++++.+.. +.|++.
T Consensus 155 ~~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~-~ipvia 194 (230)
T TIGR00007 155 EELGLEGIIYTDISRDGTLSGPNFELTKELVKAV-NVPVIA 194 (230)
T ss_pred HhCCCCEEEEEeecCCCCcCCCCHHHHHHHHHhC-CCCEEE
Confidence 789999999999988863 8899999988763 455543
No 60
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=95.27 E-value=0.08 Score=43.14 Aligned_cols=74 Identities=22% Similarity=0.308 Sum_probs=48.3
Q ss_pred EEEecCHHHHHHHHHcCCCEEEec-CC---CCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930 13 EVCVDSVASALAAVRGGADRLELC-AA---LSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDC 88 (146)
Q Consensus 13 Evcv~s~~~a~~A~~~GAdRIELc-~~---l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI 88 (146)
=.=|.|++++++|.+.|+|-|--- +. ...| ..|.+.+++++++. ++|| +. .|.+ +|++ +.
T Consensus 96 MADist~ee~~~A~~~G~D~I~TTLsGYT~~t~~-~~pD~~lv~~l~~~-~~pv--Ia----EGri-~tpe-------~a 159 (192)
T PF04131_consen 96 MADISTLEEAINAAELGFDIIGTTLSGYTPYTKG-DGPDFELVRELVQA-DVPV--IA----EGRI-HTPE-------QA 159 (192)
T ss_dssp EEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTSTT-SSHHHHHHHHHHHT-TSEE--EE----ESS---SHH-------HH
T ss_pred eeecCCHHHHHHHHHcCCCEEEcccccCCCCCCC-CCCCHHHHHHHHhC-CCcE--ee----cCCC-CCHH-------HH
Confidence 344689999999999999988543 22 2334 66889999998875 7883 22 2333 3443 45
Q ss_pred HHHHHcCCCEEEEe
Q psy7930 89 HQFVESGADGFVIG 102 (146)
Q Consensus 89 ~~~~~~GadG~VfG 102 (146)
..+.++||..||+|
T Consensus 160 ~~al~~GA~aVVVG 173 (192)
T PF04131_consen 160 AKALELGAHAVVVG 173 (192)
T ss_dssp HHHHHTT-SEEEE-
T ss_pred HHHHhcCCeEEEEC
Confidence 66788999999999
No 61
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=95.26 E-value=0.3 Score=39.11 Aligned_cols=87 Identities=26% Similarity=0.295 Sum_probs=63.4
Q ss_pred HHHHHHHHcCCCEEEecC-CCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930 20 ASALAAVRGGADRLELCA-ALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG 98 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~-~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG 98 (146)
+-+..+.+.|++.+.+-+ +....|.......++.+.+..++|+.+ +|+.. |. +|++.+.++|||+
T Consensus 36 e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~v------~GGi~-~~-------~~~~~~~~~Ga~~ 101 (241)
T PRK13585 36 EVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEAVGVPVQL------GGGIR-SA-------EDAASLLDLGVDR 101 (241)
T ss_pred HHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHHcCCcEEE------cCCcC-CH-------HHHHHHHHcCCCE
Confidence 556677789999998885 334557778889999999988888865 23233 22 5567777899999
Q ss_pred EEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930 99 FVIGALTGEQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 99 ~VfG~L~~dg~iD~~~~~~Li~~a~ 123 (146)
+++|.-... |.+.++++.+..+
T Consensus 102 v~iGs~~~~---~~~~~~~i~~~~g 123 (241)
T PRK13585 102 VILGTAAVE---NPEIVRELSEEFG 123 (241)
T ss_pred EEEChHHhh---ChHHHHHHHHHhC
Confidence 999975532 5567777777764
No 62
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=95.24 E-value=0.3 Score=40.85 Aligned_cols=94 Identities=24% Similarity=0.345 Sum_probs=63.4
Q ss_pred HHHHHHHHcCCCEEEecC---CC--------------CCCCCCC--CHHHHHHHH-hhCCCcEEEEE--ccCCCCCcccC
Q psy7930 20 ASALAAVRGGADRLELCA---AL--------------SEGGLTP--TLGLYRVIK-RLVLVPVFVMI--RVRAGFDFVFS 77 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~---~l--------------~~GGlTP--S~g~i~~~~-~~~~ipv~vMI--RP~R~gdF~Ys 77 (146)
+-+....++|||-|||-= +. -..|+|. .+..+++++ +..++|+.+|- .| =|.|.
T Consensus 30 ~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~----i~~~G 105 (258)
T PRK13111 30 EIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNP----IFQYG 105 (258)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccH----HhhcC
Confidence 345667889999999973 21 1245554 466777777 45689998887 44 25666
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC--CCCeEE
Q psy7930 78 QAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG--DRPITF 129 (146)
Q Consensus 78 ~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~vtF 129 (146)
-+.| ++.++++|+||+.+ +| +-.+..+++++.++ ++..++
T Consensus 106 ~e~f------~~~~~~aGvdGvii----pD--Lp~ee~~~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 106 VERF------AADAAEAGVDGLII----PD--LPPEEAEELRAAAKKHGLDLIF 147 (258)
T ss_pred HHHH------HHHHHHcCCcEEEE----CC--CCHHHHHHHHHHHHHcCCcEEE
Confidence 5544 56788999999998 44 34467777777776 454443
No 63
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.21 E-value=0.13 Score=43.82 Aligned_cols=82 Identities=26% Similarity=0.246 Sum_probs=60.3
Q ss_pred ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930 10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH 89 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~ 89 (146)
..+||=|+|++++..|.+.|||.|=|- | .|...++++.+..+-.. .|-- .|| +=.+.|+
T Consensus 195 ~kIeVEv~tleea~ea~~~gaDiI~LD-n-------~s~e~l~~av~~~~~~~--~lea-SGG----------I~~~ni~ 253 (281)
T PRK06106 195 VKIEVEVDTLDQLEEALELGVDAVLLD-N-------MTPDTLREAVAIVAGRA--ITEA-SGR----------ITPETAP 253 (281)
T ss_pred CcEEEEeCCHHHHHHHHHcCCCEEEeC-C-------CCHHHHHHHHHHhCCCc--eEEE-ECC----------CCHHHHH
Confidence 468999999999999999999999654 4 36688888877553211 1344 344 1236788
Q ss_pred HHHHcCCCEEEEeeecCCC-CcCH
Q psy7930 90 QFVESGADGFVIGALTGEQ-EIDI 112 (146)
Q Consensus 90 ~~~~~GadG~VfG~L~~dg-~iD~ 112 (146)
.+.+.|+|.|+.|.|+-+. .+|.
T Consensus 254 ~yA~tGVD~Is~Galthsa~~~Di 277 (281)
T PRK06106 254 AIAASGVDLISVGWLTHSAPVLDI 277 (281)
T ss_pred HHHhcCCCEEEeChhhcCCCcccc
Confidence 8999999999999999743 3553
No 64
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=95.20 E-value=0.23 Score=38.58 Aligned_cols=76 Identities=29% Similarity=0.392 Sum_probs=58.4
Q ss_pred cceeEEEecCHHHHHHHHHcCCCEEEecCCC---CCCCCCC-CHHHHHHHHhhCCCcEEEE--EccCCCCCcccCHHHHH
Q psy7930 9 KTTLEVCVDSVASALAAVRGGADRLELCAAL---SEGGLTP-TLGLYRVIKRLVLVPVFVM--IRVRAGFDFVFSQAEKE 82 (146)
Q Consensus 9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l---~~GGlTP-S~g~i~~~~~~~~ipv~vM--IRP~R~gdF~Ys~~E~~ 82 (146)
..++=+-+-|.+++..|.+.|+|-+=|--=. +--|.+| ....++++++...+||+++ |.|
T Consensus 95 ~~~ig~S~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI~~-------------- 160 (180)
T PF02581_consen 95 DKIIGASCHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGITP-------------- 160 (180)
T ss_dssp TSEEEEEESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS--T--------------
T ss_pred ceEEEeecCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCCCH--------------
Confidence 4578889999999999999999999876521 2334444 4778888899999999998 444
Q ss_pred HHHHHHHHHHHcCCCEEEE
Q psy7930 83 IMALDCHQFVESGADGFVI 101 (146)
Q Consensus 83 ~M~~dI~~~~~~GadG~Vf 101 (146)
+++..++++|++|+.+
T Consensus 161 ---~~i~~l~~~Ga~gvAv 176 (180)
T PF02581_consen 161 ---ENIPELREAGADGVAV 176 (180)
T ss_dssp ---TTHHHHHHTT-SEEEE
T ss_pred ---HHHHHHHHcCCCEEEE
Confidence 6788899999999975
No 65
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=95.16 E-value=0.17 Score=42.53 Aligned_cols=74 Identities=26% Similarity=0.275 Sum_probs=54.0
Q ss_pred ecCHHHHHHHHHcCCCEEEecCC--CCCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHH
Q psy7930 16 VDSVASALAAVRGGADRLELCAA--LSEGGLTPTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQF 91 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~~--l~~GGlTPS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~ 91 (146)
+.|.+++..|++.|||-|-+..+ -...+-.|+...+.++++.+ ++||.. - || +... .|+..+
T Consensus 180 v~s~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia---~--GG-I~~~--------~d~~ka 245 (299)
T cd02809 180 ILTPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLL---D--GG-IRRG--------TDVLKA 245 (299)
T ss_pred cCCHHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEE---e--CC-CCCH--------HHHHHH
Confidence 38899999999999999998643 12223457788888888876 477643 2 44 4433 677777
Q ss_pred HHcCCCEEEEee
Q psy7930 92 VESGADGFVIGA 103 (146)
Q Consensus 92 ~~~GadG~VfG~ 103 (146)
..+|||+|.+|=
T Consensus 246 l~lGAd~V~ig~ 257 (299)
T cd02809 246 LALGADAVLIGR 257 (299)
T ss_pred HHcCCCEEEEcH
Confidence 789999999994
No 66
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=95.14 E-value=0.13 Score=43.81 Aligned_cols=84 Identities=21% Similarity=0.256 Sum_probs=61.7
Q ss_pred ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC-CcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930 10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL-VPVFVMIRVRAGFDFVFSQAEKEIMALDC 88 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~-ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI 88 (146)
..+||=++|++++..|.+.|||.|-|- .. |...++++.+... ..-.+.|-- -|| +=.+.|
T Consensus 189 ~kIeVEv~tleea~ea~~~GaDiI~lD------n~--~~e~l~~~v~~l~~~~~~~~lea-sGG----------I~~~ni 249 (277)
T TIGR01334 189 RKITVEADTIEQALTVLQASPDILQLD------KF--TPQQLHHLHERLKFFDHIPTLAA-AGG----------INPENI 249 (277)
T ss_pred CCEEEECCCHHHHHHHHHcCcCEEEEC------CC--CHHHHHHHHHHHhccCCCEEEEE-ECC----------CCHHHH
Confidence 458888899999999999999999886 33 4455665555441 222445555 455 223678
Q ss_pred HHHHHcCCCEEEEeeecCCCCcCH
Q psy7930 89 HQFVESGADGFVIGALTGEQEIDI 112 (146)
Q Consensus 89 ~~~~~~GadG~VfG~L~~dg~iD~ 112 (146)
..+.+.|+|.++.|+|+.-...|.
T Consensus 250 ~~ya~~GvD~is~gal~~a~~~Di 273 (277)
T TIGR01334 250 ADYIEAGIDLFITSAPYYAAPCDI 273 (277)
T ss_pred HHHHhcCCCEEEeCcceecCccce
Confidence 889999999999999997777765
No 67
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=95.12 E-value=0.23 Score=40.04 Aligned_cols=104 Identities=22% Similarity=0.292 Sum_probs=68.6
Q ss_pred ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC-----CcEEEEEccCCCCCccc-------CHHHHHH
Q psy7930 16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL-----VPVFVMIRVRAGFDFVF-------SQAEKEI 83 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~-----ipv~vMIRP~R~gdF~Y-------s~~E~~~ 83 (146)
+.|.+++....+.||+++-+.+.+.. +..+++++.+..+ +++-+.+|+ -.+..++ ++.+
T Consensus 80 I~s~~d~~~~l~~G~~~v~ig~~~~~-----~p~~~~~i~~~~~~~~i~~~ld~k~~~-~~~~~v~~~~~~~~~~~~--- 150 (243)
T cd04731 80 IRSLEDARRLLRAGADKVSINSAAVE-----NPELIREIAKRFGSQCVVVSIDAKRRG-DGGYEVYTHGGRKPTGLD--- 150 (243)
T ss_pred CCCHHHHHHHHHcCCceEEECchhhh-----ChHHHHHHHHHcCCCCEEEEEEeeecC-CCceEEEEcCCceecCCC---
Confidence 45789999999999999988865443 4577777776552 333333333 1011222 2222
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeEE
Q psy7930 84 MALDCHQFVESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPITF 129 (146)
Q Consensus 84 M~~dI~~~~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vtF 129 (146)
..+-++.+.++|+|.+++.-.+.+|+ .|.+.++++.+.. ++|+..
T Consensus 151 ~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~-~~pvia 198 (243)
T cd04731 151 AVEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSAV-NIPVIA 198 (243)
T ss_pred HHHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCCEEE
Confidence 23455777899999999988887653 7888888887764 566553
No 68
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=95.10 E-value=0.14 Score=42.96 Aligned_cols=80 Identities=23% Similarity=0.243 Sum_probs=50.8
Q ss_pred eeEEEec-CHHH----HHHHHHcCCCEEEecC---CC---CCCC----CCC--CHHHHHHHHhhCCCcEEEEEccCCCCC
Q psy7930 11 TLEVCVD-SVAS----ALAAVRGGADRLELCA---AL---SEGG----LTP--TLGLYRVIKRLVLVPVFVMIRVRAGFD 73 (146)
Q Consensus 11 ~lEvcv~-s~~~----a~~A~~~GAdRIELc~---~l---~~GG----lTP--S~g~i~~~~~~~~ipv~vMIRP~R~gd 73 (146)
+.-+... +.++ +..+++.|||-|||+- +. ..+| -.| -..+++.+++.+++||.|=||| .
T Consensus 103 i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~-~--- 178 (299)
T cd02940 103 IASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTP-N--- 178 (299)
T ss_pred EEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCC-C---
Confidence 4444444 5544 3445557999999943 32 1111 223 3456677777778999999999 2
Q ss_pred cccCHHHHHHHHHHHHHHHHcCCCEEEE
Q psy7930 74 FVFSQAEKEIMALDCHQFVESGADGFVI 101 (146)
Q Consensus 74 F~Ys~~E~~~M~~dI~~~~~~GadG~Vf 101 (146)
+ ..+.+.++.+.+.|+|||++
T Consensus 179 ~-------~~~~~~a~~~~~~Gadgi~~ 199 (299)
T cd02940 179 I-------TDIREIARAAKEGGADGVSA 199 (299)
T ss_pred c-------hhHHHHHHHHHHcCCCEEEE
Confidence 2 12455567788999999994
No 69
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=95.09 E-value=0.14 Score=46.72 Aligned_cols=75 Identities=17% Similarity=0.104 Sum_probs=52.9
Q ss_pred ecCHHHHHHHHHcCCCEEEec-------CCCCCCC-CCC---CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHH
Q psy7930 16 VDSVASALAAVRGGADRLELC-------AALSEGG-LTP---TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIM 84 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc-------~~l~~GG-lTP---S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M 84 (146)
|.+.+++..|++.|||-|=.. ..-..+| -.| +...+.++.+..++||.. .|++.|+
T Consensus 297 v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIa------dGGI~~~------- 363 (505)
T PLN02274 297 VVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIA------DGGISNS------- 363 (505)
T ss_pred CCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEE------eCCCCCH-------
Confidence 788999999999999998663 2211111 112 333455666666788643 4568877
Q ss_pred HHHHHHHHHcCCCEEEEeee
Q psy7930 85 ALDCHQFVESGADGFVIGAL 104 (146)
Q Consensus 85 ~~dI~~~~~~GadG~VfG~L 104 (146)
.||..+..+||+++++|=+
T Consensus 364 -~di~kAla~GA~~V~vGs~ 382 (505)
T PLN02274 364 -GHIVKALTLGASTVMMGSF 382 (505)
T ss_pred -HHHHHHHHcCCCEEEEchh
Confidence 7899999999999999954
No 70
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=95.05 E-value=0.073 Score=45.86 Aligned_cols=75 Identities=24% Similarity=0.367 Sum_probs=53.7
Q ss_pred EecCHHHHHHHHHcCCCEEEec-------------------------CCCCCC-------CCCCCHHHHHHHHhhCCCcE
Q psy7930 15 CVDSVASALAAVRGGADRLELC-------------------------AALSEG-------GLTPTLGLYRVIKRLVLVPV 62 (146)
Q Consensus 15 cv~s~~~a~~A~~~GAdRIELc-------------------------~~l~~G-------GlTPS~g~i~~~~~~~~ipv 62 (146)
=+.|+++++.|.+.|||-|=-- ++|..- =+-|.+.+++++++..++||
T Consensus 127 d~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPV 206 (293)
T PRK04180 127 GARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPV 206 (293)
T ss_pred cCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCE
Confidence 3789999999999999988654 111110 13478899999999889997
Q ss_pred E-EEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930 63 F-VMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIG 102 (146)
Q Consensus 63 ~-vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG 102 (146)
. +.+ || .+|+ +|+..+.++|++||++|
T Consensus 207 V~~Ae----GG--I~TP-------edaa~vme~GAdgVaVG 234 (293)
T PRK04180 207 VNFAA----GG--IATP-------ADAALMMQLGADGVFVG 234 (293)
T ss_pred EEEEe----CC--CCCH-------HHHHHHHHhCCCEEEEc
Confidence 5 222 44 2344 45666778999999987
No 71
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=95.04 E-value=0.46 Score=40.29 Aligned_cols=93 Identities=14% Similarity=0.204 Sum_probs=69.3
Q ss_pred HHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930 19 VASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG 98 (146)
Q Consensus 19 ~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG 98 (146)
.+-|..=++.||+++.+.+= -||..-...+++++++ +++||.+ ||+.. + ++++.+.++||+-
T Consensus 46 ~~~A~~~~~~Ga~~lHvVDL--dgg~~~n~~~i~~i~~-~~~~vqv------GGGIR-~--------e~i~~~l~~Ga~r 107 (262)
T PLN02446 46 AEFAEMYKRDGLTGGHVIML--GADDASLAAALEALRA-YPGGLQV------GGGVN-S--------ENAMSYLDAGASH 107 (262)
T ss_pred HHHHHHHHHCCCCEEEEEEC--CCCCcccHHHHHHHHh-CCCCEEE------eCCcc-H--------HHHHHHHHcCCCE
Confidence 45666667789999999973 2233334778888888 7778765 66553 1 6788999999999
Q ss_pred EEEeeec-CCCCcCHHHHHHHHHHhCCCCeEE
Q psy7930 99 FVIGALT-GEQEIDIEFIRQLKTIIGDRPITF 129 (146)
Q Consensus 99 ~VfG~L~-~dg~iD~~~~~~Li~~a~~~~vtF 129 (146)
||+|-.- .|+.||.+.++++++.-++=.++.
T Consensus 108 ViigT~Av~~~~~~p~~v~~~~~~~G~~~Ivv 139 (262)
T PLN02446 108 VIVTSYVFRDGQIDLERLKDLVRLVGKQRLVL 139 (262)
T ss_pred EEEchHHHhCCCCCHHHHHHHHHHhCCCCEEE
Confidence 9999432 368999999999999886555544
No 72
>PRK01060 endonuclease IV; Provisional
Probab=95.03 E-value=0.57 Score=38.00 Aligned_cols=82 Identities=9% Similarity=0.083 Sum_probs=49.0
Q ss_pred HHHHHHHHcCCCEEEecCC-C---CCCCCCC-CHHHHHHHHhhCCCcEE--EEEccCCCCCcc-----cCHHHHHHHHHH
Q psy7930 20 ASALAAVRGGADRLELCAA-L---SEGGLTP-TLGLYRVIKRLVLVPVF--VMIRVRAGFDFV-----FSQAEKEIMALD 87 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~-l---~~GGlTP-S~g~i~~~~~~~~ipv~--vMIRP~R~gdF~-----Ys~~E~~~M~~d 87 (146)
+.+..+.+.|.|.+||--. . ..+-.|| ....+++..+..++.+. ++--| -..++. +-+.-++.+++.
T Consensus 16 ~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~-~~~nl~~~d~~~r~~s~~~~~~~ 94 (281)
T PRK01060 16 GAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPEDILVHAP-YLINLGNPNKEILEKSRDFLIQE 94 (281)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCceEEecc-eEecCCCCCHHHHHHHHHHHHHH
Confidence 4457788999999999632 1 1112233 23445555555566631 11123 112222 223447789999
Q ss_pred HHHHHHcCCCEEEEe
Q psy7930 88 CHQFVESGADGFVIG 102 (146)
Q Consensus 88 I~~~~~~GadG~VfG 102 (146)
|+.++++|+..+|+-
T Consensus 95 i~~A~~lga~~vv~h 109 (281)
T PRK01060 95 IERCAALGAKLLVFH 109 (281)
T ss_pred HHHHHHcCCCEEEEc
Confidence 999999999999984
No 73
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=94.98 E-value=0.16 Score=39.78 Aligned_cols=73 Identities=18% Similarity=0.149 Sum_probs=52.7
Q ss_pred EEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHH
Q psy7930 14 VCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFV 92 (146)
Q Consensus 14 vcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~ 92 (146)
+=+.|++++..|.+.|||-|-+=. .... ....++.+++.. ++|+. | -||= +. +++..+.
T Consensus 102 ~gv~t~~e~~~A~~~Gad~i~~~p----~~~~-g~~~~~~l~~~~~~~p~~----a-~GGI---~~-------~n~~~~~ 161 (190)
T cd00452 102 PGVATPTEIMQALELGADIVKLFP----AEAV-GPAYIKALKGPFPQVRFM----P-TGGV---SL-------DNAAEWL 161 (190)
T ss_pred CCcCCHHHHHHHHHCCCCEEEEcC----Cccc-CHHHHHHHHhhCCCCeEE----E-eCCC---CH-------HHHHHHH
Confidence 344499999999999999999831 1222 566788877655 46654 4 5662 22 6788899
Q ss_pred HcCCCEEEEeeecC
Q psy7930 93 ESGADGFVIGALTG 106 (146)
Q Consensus 93 ~~GadG~VfG~L~~ 106 (146)
+.|++++++|-+-.
T Consensus 162 ~~G~~~v~v~s~i~ 175 (190)
T cd00452 162 AAGVVAVGGGSLLP 175 (190)
T ss_pred HCCCEEEEEchhcc
Confidence 99999999997654
No 74
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=94.96 E-value=0.63 Score=39.96 Aligned_cols=115 Identities=24% Similarity=0.290 Sum_probs=72.7
Q ss_pred cceeEEEecCHHHHH----HHHHcCCCEEEecCCC-----CCC--C----CCC--CHHHHHHHHhhCCCcEEEEEccCCC
Q psy7930 9 KTTLEVCVDSVASAL----AAVRGGADRLELCAAL-----SEG--G----LTP--TLGLYRVIKRLVLVPVFVMIRVRAG 71 (146)
Q Consensus 9 ~~~lEvcv~s~~~a~----~A~~~GAdRIELc~~l-----~~G--G----lTP--S~g~i~~~~~~~~ipv~vMIRP~R~ 71 (146)
.+.+-++-.|+++.. .+++.|+|-|||+.+- .-+ | -.| ...+++.+++.+++||-|=||. +
T Consensus 66 p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~--g 143 (333)
T PRK11815 66 PVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRI--G 143 (333)
T ss_pred cEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEe--e
Confidence 467889999987644 4556799999999631 111 1 112 1246777777788999999998 3
Q ss_pred CCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeecC-----C-------CCcCHHHHHHHHHHhCCCCeE
Q psy7930 72 FDFVFSQAEKEIMALDCHQFVESGADGFVIGALTG-----E-------QEIDIEFIRQLKTIIGDRPIT 128 (146)
Q Consensus 72 gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~-----d-------g~iD~~~~~~Li~~a~~~~vt 128 (146)
.+-.-+ .+.+.+=++.+.+.|+|.+.+-.=+. . +..|.+.++++.+.....|+.
T Consensus 144 ~~~~~t---~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI 209 (333)
T PRK11815 144 IDDQDS---YEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIE 209 (333)
T ss_pred eCCCcC---HHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEE
Confidence 221111 22344446778899999998753211 1 237888888887765455554
No 75
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=94.94 E-value=0.82 Score=38.41 Aligned_cols=92 Identities=17% Similarity=0.151 Sum_probs=63.2
Q ss_pred HHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEE
Q psy7930 21 SALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFV 100 (146)
Q Consensus 21 ~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~V 100 (146)
.+..+.+.|++-|+|.-+-...|-+.....++.+++.+++||.+=... + .++.+.+.++|+|+|+
T Consensus 134 ~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~v~--------s-------~~~a~~a~~~G~d~I~ 198 (299)
T cd02809 134 LLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKGIL--------T-------PEDALRAVDAGADGIV 198 (299)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEeecC--------C-------HHHHHHHHHCCCCEEE
Confidence 455567789999999866555555578899999999989998765433 1 3568889999999999
Q ss_pred Eee---ecC-CCCcCHHHHHHHHHHhC-CCCe
Q psy7930 101 IGA---LTG-EQEIDIEFIRQLKTIIG-DRPI 127 (146)
Q Consensus 101 fG~---L~~-dg~iD~~~~~~Li~~a~-~~~v 127 (146)
++- -.. .|..+.+.+.++.+... .+|+
T Consensus 199 v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipv 230 (299)
T cd02809 199 VSNHGGRQLDGAPATIDALPEIVAAVGGRIEV 230 (299)
T ss_pred EcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeE
Confidence 852 111 13345666666666553 3444
No 76
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=94.93 E-value=0.68 Score=37.75 Aligned_cols=111 Identities=14% Similarity=0.042 Sum_probs=67.0
Q ss_pred HHHHHHHHcCCCEEEecCCCCC---CCCCCCHHHHHHH---HhhCCCcEEEEEccCCCCCccc---CH----HHHHHHHH
Q psy7930 20 ASALAAVRGGADRLELCAALSE---GGLTPTLGLYRVI---KRLVLVPVFVMIRVRAGFDFVF---SQ----AEKEIMAL 86 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~---GGlTPS~g~i~~~---~~~~~ipv~vMIRP~R~gdF~Y---s~----~E~~~M~~ 86 (146)
+.+..|.+.|-+-|||--.-.. ..+.-+.+.++++ .+..+++|..|--. -.+.|.. ++ ..++.+++
T Consensus 20 e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~-~~~~~~l~~~~~~~r~~~~~~~~~ 98 (279)
T TIGR00542 20 ERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPSMCLS-AHRRFPLGSKDKAVRQQGLEIMEK 98 (279)
T ss_pred HHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCceeeecC-CCccCcCCCcCHHHHHHHHHHHHH
Confidence 5567889999999999522111 1122234444444 45568888766422 1222322 22 24566889
Q ss_pred HHHHHHHcCCCEEEEeeecC-CCCcCH-------HHHHHHHHHhC--CCCeEEee
Q psy7930 87 DCHQFVESGADGFVIGALTG-EQEIDI-------EFIRQLKTIIG--DRPITFHR 131 (146)
Q Consensus 87 dI~~~~~~GadG~VfG~L~~-dg~iD~-------~~~~~Li~~a~--~~~vtFHR 131 (146)
-|+.++++|++-++|+.-.. .+.-+. +.++++.+.|+ |+.+.+|.
T Consensus 99 ~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 99 AIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 99999999999998874221 122222 56677777776 67777774
No 77
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=94.85 E-value=0.24 Score=38.22 Aligned_cols=47 Identities=17% Similarity=0.352 Sum_probs=31.3
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCCC----HHHHHHHHhhCCCc--EEEEEcc
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTPT----LGLYRVIKRLVLVP--VFVMIRV 68 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS----~g~i~~~~~~~~ip--v~vMIRP 68 (146)
+.+..+.++|++.|+|- ...|...|. ...++++++..+.| +++|+..
T Consensus 16 ~~~~~~~~~G~~~i~l~--~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d 68 (211)
T cd00429 16 EELKRLEEAGADWIHID--VMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVEN 68 (211)
T ss_pred HHHHHHHHcCCCEEEEe--cccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeCC
Confidence 56788999999999995 233444443 36788887765455 4566653
No 78
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=94.80 E-value=0.54 Score=39.69 Aligned_cols=111 Identities=17% Similarity=0.252 Sum_probs=69.3
Q ss_pred ceeEEEecCHHHH----HHHHHcCCCEEEecCCCC------C-CCC----CC--CHHHHHHHHhhCCCcEEEEEccCCCC
Q psy7930 10 TTLEVCVDSVASA----LAAVRGGADRLELCAALS------E-GGL----TP--TLGLYRVIKRLVLVPVFVMIRVRAGF 72 (146)
Q Consensus 10 ~~lEvcv~s~~~a----~~A~~~GAdRIELc~~l~------~-GGl----TP--S~g~i~~~~~~~~ipv~vMIRP~R~g 72 (146)
+++-++..++++. ..+++.|+|-|||+.+-. . ||. .| ...+++.+++.+++||.|=||+ |
T Consensus 65 ~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~--g- 141 (319)
T TIGR00737 65 ISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRI--G- 141 (319)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEc--c-
Confidence 4588888888554 445668999999975421 1 231 22 1345667777778999888876 2
Q ss_pred CcccCHHHHHHHHHHHHHHHHcCCCEEEEeeecCC----CCcCHHHHHHHHHHhCCCCeE
Q psy7930 73 DFVFSQAEKEIMALDCHQFVESGADGFVIGALTGE----QEIDIEFIRQLKTIIGDRPIT 128 (146)
Q Consensus 73 dF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~d----g~iD~~~~~~Li~~a~~~~vt 128 (146)
+.-+..+ ..+-++.+.+.|+|+|++-.-+.. |..|.+.++++.+..+ +|+.
T Consensus 142 -~~~~~~~---~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~-ipvi 196 (319)
T TIGR00737 142 -WDDAHIN---AVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVR-IPVI 196 (319)
T ss_pred -cCCCcch---HHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCC-CcEE
Confidence 2111111 234566788899999987543332 3567888777776553 4443
No 79
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.78 E-value=0.24 Score=42.32 Aligned_cols=77 Identities=25% Similarity=0.263 Sum_probs=57.9
Q ss_pred ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930 10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH 89 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~ 89 (146)
..+||=|+|++++..|.++|||.|=|- |+ |+..++++.+..+- .+.|-- .|| +=.+.|.
T Consensus 194 ~kIeVEv~slee~~ea~~~gaDiImLD-n~-------s~e~l~~av~~~~~--~~~lea-SGg----------I~~~ni~ 252 (281)
T PRK06543 194 THVEVEVDRLDQIEPVLAAGVDTIMLD-NF-------SLDDLREGVELVDG--RAIVEA-SGN----------VNLNTVG 252 (281)
T ss_pred CcEEEEeCCHHHHHHHHhcCCCEEEEC-CC-------CHHHHHHHHHHhCC--CeEEEE-ECC----------CCHHHHH
Confidence 469999999999999999999999664 43 55677777665431 224555 455 2236788
Q ss_pred HHHHcCCCEEEEeeecCC
Q psy7930 90 QFVESGADGFVIGALTGE 107 (146)
Q Consensus 90 ~~~~~GadG~VfG~L~~d 107 (146)
.+.+.|+|.++.|.|+-+
T Consensus 253 ~yA~tGVD~Is~galths 270 (281)
T PRK06543 253 AIASTGVDVISVGALTHS 270 (281)
T ss_pred HHHhcCCCEEEeCccccC
Confidence 899999999999999975
No 80
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.76 E-value=0.17 Score=43.26 Aligned_cols=84 Identities=23% Similarity=0.224 Sum_probs=60.8
Q ss_pred ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930 10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDC 88 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI 88 (146)
..+||=|+|++++..|.+.|||.|=|- |++ +..++++.+.. ...-++.|-- .|| +=.+.|
T Consensus 200 ~kIeVEv~tl~ea~eal~~gaDiI~LD-nm~-------~e~vk~av~~~~~~~~~v~iea-SGG----------I~~~ni 260 (289)
T PRK07896 200 LPCEVEVDSLEQLDEVLAEGAELVLLD-NFP-------VWQTQEAVQRRDARAPTVLLES-SGG----------LTLDTA 260 (289)
T ss_pred CCEEEEcCCHHHHHHHHHcCCCEEEeC-CCC-------HHHHHHHHHHHhccCCCEEEEE-ECC----------CCHHHH
Confidence 358888899999999999999999765 433 66777776543 1233445555 455 123678
Q ss_pred HHHHHcCCCEEEEeeecCC-CCcCH
Q psy7930 89 HQFVESGADGFVIGALTGE-QEIDI 112 (146)
Q Consensus 89 ~~~~~~GadG~VfG~L~~d-g~iD~ 112 (146)
..+.+.|+|.|++|.|+-+ ..+|.
T Consensus 261 ~~yA~tGvD~Is~galt~sa~~~Di 285 (289)
T PRK07896 261 AAYAETGVDYLAVGALTHSVPVLDI 285 (289)
T ss_pred HHHHhcCCCEEEeChhhcCCCcccc
Confidence 8899999999999999974 34554
No 81
>PRK08999 hypothetical protein; Provisional
Probab=94.76 E-value=0.46 Score=39.51 Aligned_cols=75 Identities=19% Similarity=0.166 Sum_probs=58.4
Q ss_pred ceeEEEecCHHHHHHHHHcCCCEEEecCCC----CCCCCCCCHHHHHHHHhhCCCcEEEE--EccCCCCCcccCHHHHHH
Q psy7930 10 TTLEVCVDSVASALAAVRGGADRLELCAAL----SEGGLTPTLGLYRVIKRLVLVPVFVM--IRVRAGFDFVFSQAEKEI 83 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l----~~GGlTPS~g~i~~~~~~~~ipv~vM--IRP~R~gdF~Ys~~E~~~ 83 (146)
.++=+-+-|.+++..|.+.|||.|=+-.-. ..++.......++.+++..++||+++ |.|
T Consensus 227 ~~ig~S~h~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~AiGGI~~--------------- 291 (312)
T PRK08999 227 RWVAASCHDAEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVPLPVYALGGLGP--------------- 291 (312)
T ss_pred CEEEEecCCHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCCH---------------
Confidence 467788899999999999999999876532 22332224677888888889999987 444
Q ss_pred HHHHHHHHHHcCCCEEEE
Q psy7930 84 MALDCHQFVESGADGFVI 101 (146)
Q Consensus 84 M~~dI~~~~~~GadG~Vf 101 (146)
+++..++++|++||.+
T Consensus 292 --~~~~~~~~~g~~gva~ 307 (312)
T PRK08999 292 --GDLEEAREHGAQGIAG 307 (312)
T ss_pred --HHHHHHHHhCCCEEEE
Confidence 7788899999999864
No 82
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=94.76 E-value=0.47 Score=37.97 Aligned_cols=69 Identities=22% Similarity=0.264 Sum_probs=44.5
Q ss_pred HHHHHcCCCEEEecCCCCCCCC---CCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930 23 LAAVRGGADRLELCAALSEGGL---TPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG 98 (146)
Q Consensus 23 ~~A~~~GAdRIELc~~l~~GGl---TPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG 98 (146)
....+.|.+.||+-..-...-. .-....++.+++.. +.++.+|+|+ . .++++.+++.|++.
T Consensus 26 ~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~-~--------------~~~i~~a~~~g~~~ 90 (265)
T cd03174 26 EALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRN-R--------------EKGIERALEAGVDE 90 (265)
T ss_pred HHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccC-c--------------hhhHHHHHhCCcCE
Confidence 3455779999998642111000 11245677777665 6889899988 3 56777888888877
Q ss_pred EEEeeecC
Q psy7930 99 FVIGALTG 106 (146)
Q Consensus 99 ~VfG~L~~ 106 (146)
+-+-.-..
T Consensus 91 i~i~~~~s 98 (265)
T cd03174 91 VRIFDSAS 98 (265)
T ss_pred EEEEEecC
Confidence 76666444
No 83
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=94.67 E-value=0.23 Score=43.76 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=56.5
Q ss_pred eeEEEecCHHHHHHHHHcCCCEEEecCC--CCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930 11 TLEVCVDSVASALAAVRGGADRLELCAA--LSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDC 88 (146)
Q Consensus 11 ~lEvcv~s~~~a~~A~~~GAdRIELc~~--l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI 88 (146)
+++| -+.+++..|.+.|+|-|=+..+ =...+.-|+...+.++++.+++||.+. |++... .||
T Consensus 241 iKgV--~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~~~~vi~d------GGIr~g--------~Dv 304 (361)
T cd04736 241 VKGI--VTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAATYKPVLID------SGIRRG--------SDI 304 (361)
T ss_pred EecC--CCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHhCCeEEEe------CCCCCH--------HHH
Confidence 4665 6999999999999999988753 111222356888888888778776543 334443 688
Q ss_pred HHHHHcCCCEEEEe
Q psy7930 89 HQFVESGADGFVIG 102 (146)
Q Consensus 89 ~~~~~~GadG~VfG 102 (146)
..+..+||+.+.+|
T Consensus 305 ~KALaLGA~aV~iG 318 (361)
T cd04736 305 VKALALGANAVLLG 318 (361)
T ss_pred HHHHHcCCCEEEEC
Confidence 89999999999998
No 84
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=94.62 E-value=0.47 Score=39.93 Aligned_cols=84 Identities=26% Similarity=0.417 Sum_probs=60.7
Q ss_pred HHHH-HHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEE
Q psy7930 22 ALAA-VRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFV 100 (146)
Q Consensus 22 a~~A-~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~V 100 (146)
+..| ++++||=|-+-. ..-|-.|+...++++++.+++||.+ |++=.+ +-|..+.+. |||++
T Consensus 164 ~~~a~~~~~aDaviVtG--~~TG~~~~~~~l~~vr~~~~~PVlv------GSGvt~---------~Ni~~~l~~-ADG~I 225 (254)
T PF03437_consen 164 AKDAVERGGADAVIVTG--KATGEPPDPEKLKRVREAVPVPVLV------GSGVTP---------ENIAEYLSY-ADGAI 225 (254)
T ss_pred HHHHHHhcCCCEEEECC--cccCCCCCHHHHHHHHhcCCCCEEE------ecCCCH---------HHHHHHHHh-CCEEE
Confidence 3344 688999886654 2347789999999999998888854 222222 234444443 99999
Q ss_pred Ee-eecCCCC----cCHHHHHHHHHHhC
Q psy7930 101 IG-ALTGEQE----IDIEFIRQLKTIIG 123 (146)
Q Consensus 101 fG-~L~~dg~----iD~~~~~~Li~~a~ 123 (146)
+| .++.||. ||.++.++|++.++
T Consensus 226 VGS~~K~~G~~~n~VD~~Rv~~fm~~v~ 253 (254)
T PF03437_consen 226 VGSYFKKDGKWENPVDPERVRRFMEAVK 253 (254)
T ss_pred EeeeeeeCCEeCCcCCHHHHHHHHHHhh
Confidence 99 4777775 99999999999875
No 85
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=94.57 E-value=0.38 Score=40.89 Aligned_cols=90 Identities=27% Similarity=0.379 Sum_probs=67.4
Q ss_pred CHHHHHH--HHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930 18 SVASALA--AVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG 95 (146)
Q Consensus 18 s~~~a~~--A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G 95 (146)
|++++.. .++++||-+=+-. .--|.-|+...++.+++..++||.| |-+-++ +.+..+.+.
T Consensus 164 ~~~~~v~dtver~~aDaVI~tG--~~TG~~~d~~el~~a~~~~~~pvlv------GSGv~~---------eN~~~~l~~- 225 (263)
T COG0434 164 SLEEAVKDTVERGLADAVIVTG--SRTGSPPDLEELKLAKEAVDTPVLV------GSGVNP---------ENIEELLKI- 225 (263)
T ss_pred CHHHHHHHHHHccCCCEEEEec--ccCCCCCCHHHHHHHHhccCCCEEE------ecCCCH---------HHHHHHHHH-
Confidence 5555443 6788999876654 3457889999999999999988855 222232 345555666
Q ss_pred CCEEEEe-eecCCC----CcCHHHHHHHHHHhCCC
Q psy7930 96 ADGFVIG-ALTGEQ----EIDIEFIRQLKTIIGDR 125 (146)
Q Consensus 96 adG~VfG-~L~~dg----~iD~~~~~~Li~~a~~~ 125 (146)
+|||++| .|+.+| .||.++.++++++++..
T Consensus 226 adG~IvgT~lK~~G~~~n~VD~~Rv~~~v~~a~~~ 260 (263)
T COG0434 226 ADGVIVGTSLKKGGVTWNPVDLERVRRFVEAARRL 260 (263)
T ss_pred cCceEEEEEEccCCEecCccCHHHHHHHHHHHHHh
Confidence 9999999 588888 89999999999999753
No 86
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.51 E-value=0.34 Score=38.39 Aligned_cols=68 Identities=12% Similarity=0.192 Sum_probs=52.4
Q ss_pred ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930 16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES 94 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~ 94 (146)
+.|++++..|.+.|||-|=+- . ...-.....++.+++.+ ++|+.. -|| +-.+++..+.+.
T Consensus 112 ~~t~~e~~~A~~~Gadyv~~F---p-t~~~~G~~~l~~~~~~~~~ipvva-----iGG----------I~~~n~~~~l~a 172 (187)
T PRK07455 112 ALTPTEIVTAWQAGASCVKVF---P-VQAVGGADYIKSLQGPLGHIPLIP-----TGG----------VTLENAQAFIQA 172 (187)
T ss_pred cCCHHHHHHHHHCCCCEEEEC---c-CCcccCHHHHHHHHhhCCCCcEEE-----eCC----------CCHHHHHHHHHC
Confidence 689999999999999999982 2 12222578899999887 588654 466 112788999999
Q ss_pred CCCEEEEe
Q psy7930 95 GADGFVIG 102 (146)
Q Consensus 95 GadG~VfG 102 (146)
|++|+.+|
T Consensus 173 Ga~~vav~ 180 (187)
T PRK07455 173 GAIAVGLS 180 (187)
T ss_pred CCeEEEEe
Confidence 99999876
No 87
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=94.47 E-value=2.1 Score=34.48 Aligned_cols=111 Identities=13% Similarity=-0.057 Sum_probs=64.2
Q ss_pred HHHHHHHHcCCCEEEecCCC-----CCCCCCCC-HHHHHHHHhhCCCcEEEEEccCCCCCcc---cCH----HHHHHHHH
Q psy7930 20 ASALAAVRGGADRLELCAAL-----SEGGLTPT-LGLYRVIKRLVLVPVFVMIRVRAGFDFV---FSQ----AEKEIMAL 86 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l-----~~GGlTPS-~g~i~~~~~~~~ipv~vMIRP~R~gdF~---Ys~----~E~~~M~~ 86 (146)
+.+..|.+.|.+-|||+-.- ...+.++. ...+++..+..++.|..+-=+ -...|. .+. ..++.+++
T Consensus 20 e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~-~~~~~~~~~~d~~~r~~~~~~~~~ 98 (284)
T PRK13210 20 ERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLS-GHRRFPFGSRDPATRERALEIMKK 98 (284)
T ss_pred HHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecc-cccCcCCCCCCHHHHHHHHHHHHH
Confidence 45667789999999997421 11122221 334444555668888765312 111121 122 24677889
Q ss_pred HHHHHHHcCCCEEEEeeecC----CCCcC----HHHHHHHHHHhC--CCCeEEee
Q psy7930 87 DCHQFVESGADGFVIGALTG----EQEID----IEFIRQLKTIIG--DRPITFHR 131 (146)
Q Consensus 87 dI~~~~~~GadG~VfG~L~~----dg~iD----~~~~~~Li~~a~--~~~vtFHR 131 (146)
-|+.++.+|++-++++.-+. +..-. .+.++++.+.|. |+.+.+|-
T Consensus 99 ~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 99 AIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 99999999999999863221 11111 235677777775 66666654
No 88
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=94.45 E-value=0.48 Score=37.10 Aligned_cols=47 Identities=21% Similarity=0.398 Sum_probs=32.2
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCC----CHHHHHHHHhhCCCc--EEEEEcc
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTP----TLGLYRVIKRLVLVP--VFVMIRV 68 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTP----S~g~i~~~~~~~~ip--v~vMIRP 68 (146)
+.+..+.++|++.|+|- ..-|-..| +...++++++.++.| +++|+..
T Consensus 20 ~~~~~~~~~G~~~i~l~--~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d 72 (220)
T PRK05581 20 EEVKAVEAAGADWIHVD--VMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVEN 72 (220)
T ss_pred HHHHHHHHcCCCEEEEe--CccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeCC
Confidence 66788999999999995 22333344 467777777765544 5677753
No 89
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=94.44 E-value=0.34 Score=40.90 Aligned_cols=78 Identities=23% Similarity=0.191 Sum_probs=53.1
Q ss_pred eeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCC-CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930 11 TLEVCVDSVASALAAVRGGADRLELCAALSEGGLTP-TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH 89 (146)
Q Consensus 11 ~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTP-S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~ 89 (146)
.+=+|.+|+..++..++.|++-|==-.++--.|.-+ ...+++.+++..++||.+ - +| . -++ +|..
T Consensus 126 vlpyc~dd~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~--e---gG-I-~tp-------eda~ 191 (248)
T cd04728 126 VLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIV--D---AG-I-GTP-------SDAA 191 (248)
T ss_pred EEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEE--e---CC-C-CCH-------HHHH
Confidence 455899999999999999999882111221122222 378889888887788643 1 22 2 233 4666
Q ss_pred HHHHcCCCEEEEe
Q psy7930 90 QFVESGADGFVIG 102 (146)
Q Consensus 90 ~~~~~GadG~VfG 102 (146)
.+.++|+||+++|
T Consensus 192 ~AmelGAdgVlV~ 204 (248)
T cd04728 192 QAMELGADAVLLN 204 (248)
T ss_pred HHHHcCCCEEEEC
Confidence 6778999999997
No 90
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.40 E-value=1.1 Score=39.24 Aligned_cols=107 Identities=21% Similarity=0.199 Sum_probs=76.4
Q ss_pred cccceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCC----CCCHHHHHHHHhhC---CCcEEEEEccCCCCCcccCHH
Q psy7930 7 WNKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGL----TPTLGLYRVIKRLV---LVPVFVMIRVRAGFDFVFSQA 79 (146)
Q Consensus 7 ~~~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGl----TPS~g~i~~~~~~~---~ipv~vMIRP~R~gdF~Ys~~ 79 (146)
+.++.+-..+.|+++...|.+.|||.|=+=-. ..|+- .=|..-++++.+.+ +..++|.+.. |.. ++
T Consensus 4 ~~~~ell~pag~l~~l~~ai~~GADaVY~G~~-~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~-----~~~-~~ 76 (347)
T COG0826 4 MGKPELLAPAGNLEDLKAAIAAGADAVYIGEK-EFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNT-----LLH-ND 76 (347)
T ss_pred CCcceeecCCCCHHHHHHHHHcCCCEEEeCCc-ccccccccccCCHHHHHHHHHHHHHcCCeEEEEecc-----ccc-cc
Confidence 56677888999999999999999999965432 22222 23455566666644 7889999987 444 34
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeE
Q psy7930 80 EKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPIT 128 (146)
Q Consensus 80 E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vt 128 (146)
+++...+.++.+.++|+|+|+++ |.-.+.-+.+...++++.
T Consensus 77 ~~~~~~~~l~~l~e~GvDaviv~--------Dpg~i~l~~e~~p~l~ih 117 (347)
T COG0826 77 ELETLERYLDRLVELGVDAVIVA--------DPGLIMLARERGPDLPIH 117 (347)
T ss_pred hhhHHHHHHHHHHHcCCCEEEEc--------CHHHHHHHHHhCCCCcEE
Confidence 56668899999999999999998 444555555555455543
No 91
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=94.39 E-value=0.64 Score=37.06 Aligned_cols=86 Identities=22% Similarity=0.233 Sum_probs=57.9
Q ss_pred cCHHHHHHHHHcCCCEEEecCCCCCC-C----CCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHH
Q psy7930 17 DSVASALAAVRGGADRLELCAALSEG-G----LTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQF 91 (146)
Q Consensus 17 ~s~~~a~~A~~~GAdRIELc~~l~~G-G----lTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~ 91 (146)
||.-.+..|.+.|-+-+-|....... + -++....++...+..+||+.++--| + -++++.+.|.+-++.+
T Consensus 11 DS~~al~~a~~~G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~--~----~~e~~~~~l~~~l~~~ 84 (194)
T cd01994 11 DSCYALYRALEEGHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEIS--G----EEEDEVEDLKELLRKL 84 (194)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCC--C----CchHHHHHHHHHHHHH
Confidence 56667777888884444444322221 1 1346778888778899998755434 1 1356668888888888
Q ss_pred HHcCCCEEEEeeecCCC
Q psy7930 92 VESGADGFVIGALTGEQ 108 (146)
Q Consensus 92 ~~~GadG~VfG~L~~dg 108 (146)
++.|++++|+|.+..|-
T Consensus 85 ~~~g~~~vv~G~i~sd~ 101 (194)
T cd01994 85 KEEGVDAVVFGAILSEY 101 (194)
T ss_pred HHcCCCEEEECccccHH
Confidence 87799999999988763
No 92
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=94.37 E-value=0.28 Score=42.97 Aligned_cols=74 Identities=18% Similarity=0.203 Sum_probs=52.3
Q ss_pred HHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEE--EccCCC----CCccc---CHHHHHHHHHHHHHHHHcCC
Q psy7930 26 VRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVM--IRVRAG----FDFVF---SQAEKEIMALDCHQFVESGA 96 (146)
Q Consensus 26 ~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vM--IRP~R~----gdF~Y---s~~E~~~M~~dI~~~~~~Ga 96 (146)
.++||+=|-| +||..--...++.+. ..+|||+-- +.| +. |+|-- +.++.+.+.+|.+.+.++||
T Consensus 124 ~eaGa~aVKl-----EGg~~~~~~~I~~l~-~~GIPV~gHiGLtP-Qs~~~lGGykvqGr~~~~a~~li~dA~ale~AGA 196 (332)
T PLN02424 124 KEGGMDAVKL-----EGGSPSRVTAAKAIV-EAGIAVMGHVGLTP-QAISVLGGFRPQGRTAESAVKVVETALALQEAGC 196 (332)
T ss_pred HHhCCcEEEE-----CCCcHHHHHHHHHHH-HcCCCEEEeecccc-eeehhhcCccccCCCHHHHHHHHHHHHHHHHcCC
Confidence 4689998887 466433345566555 468887433 678 53 23322 57889999999999999999
Q ss_pred CEEEEeeecC
Q psy7930 97 DGFVIGALTG 106 (146)
Q Consensus 97 dG~VfG~L~~ 106 (146)
+++|+=++.+
T Consensus 197 f~ivLE~Vp~ 206 (332)
T PLN02424 197 FAVVLECVPA 206 (332)
T ss_pred cEEEEcCCcH
Confidence 9999977654
No 93
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=94.35 E-value=0.79 Score=36.45 Aligned_cols=64 Identities=25% Similarity=0.333 Sum_probs=46.4
Q ss_pred HHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCC---CcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930 22 ALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGF---DFVFSQAEKEIMALDCHQFVESGADG 98 (146)
Q Consensus 22 a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~g---dF~Ys~~E~~~M~~dI~~~~~~GadG 98 (146)
+.++.++||.=++.. +...++.+++..++|+..|.|= ... =|.|.. .++++.++++|||-
T Consensus 29 a~a~~~~G~~~~~~~----------~~~~i~~i~~~~~~Pil~~~~~-d~~~~~~~~~~~------~~~v~~a~~aGad~ 91 (221)
T PRK01130 29 ALAAVQGGAVGIRAN----------GVEDIKAIRAVVDVPIIGIIKR-DYPDSEVYITPT------LKEVDALAAAGADI 91 (221)
T ss_pred HHHHHHCCCeEEEcC----------CHHHHHHHHHhCCCCEEEEEec-CCCCCCceECCC------HHHHHHHHHcCCCE
Confidence 455688899888863 3789999999899999999883 311 144431 14578999999996
Q ss_pred EEEe
Q psy7930 99 FVIG 102 (146)
Q Consensus 99 ~VfG 102 (146)
+++.
T Consensus 92 I~~d 95 (221)
T PRK01130 92 IALD 95 (221)
T ss_pred EEEe
Confidence 6654
No 94
>PRK00208 thiG thiazole synthase; Reviewed
Probab=94.34 E-value=0.37 Score=40.77 Aligned_cols=75 Identities=25% Similarity=0.244 Sum_probs=52.3
Q ss_pred eeEEEecCHHHHHHHHHcCCCEE----EecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930 11 TLEVCVDSVASALAAVRGGADRL----ELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMAL 86 (146)
Q Consensus 11 ~lEvcv~s~~~a~~A~~~GAdRI----ELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~ 86 (146)
.+=+|.+|+..+.+.++.|++-| |+... ..|-.+ ...++.+++..++||.+ -+| . .++ +
T Consensus 126 vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIGs-g~gi~~--~~~i~~i~e~~~vpVIv-----eaG-I-~tp-------e 188 (250)
T PRK00208 126 VLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGS-GLGLLN--PYNLRIIIEQADVPVIV-----DAG-I-GTP-------S 188 (250)
T ss_pred EEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCC-CCCCCC--HHHHHHHHHhcCCeEEE-----eCC-C-CCH-------H
Confidence 45589999999999999999988 22321 122224 56699998887788643 123 2 233 4
Q ss_pred HHHHHHHcCCCEEEEe
Q psy7930 87 DCHQFVESGADGFVIG 102 (146)
Q Consensus 87 dI~~~~~~GadG~VfG 102 (146)
|...+.++|+||+++|
T Consensus 189 da~~AmelGAdgVlV~ 204 (250)
T PRK00208 189 DAAQAMELGADAVLLN 204 (250)
T ss_pred HHHHHHHcCCCEEEEC
Confidence 6667778999999997
No 95
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=94.32 E-value=0.21 Score=41.24 Aligned_cols=80 Identities=14% Similarity=0.072 Sum_probs=49.5
Q ss_pred CHHHHHHHHHcCCCEEEecCCC-CCC-----CCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHH
Q psy7930 18 SVASALAAVRGGADRLELCAAL-SEG-----GLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQF 91 (146)
Q Consensus 18 s~~~a~~A~~~GAdRIELc~~l-~~G-----GlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~ 91 (146)
|.-.+..|.+. ..+...-++ ..+ -=||...+++...+..++|++.+ | ..+. .++|.+.+++-+
T Consensus 13 S~~al~~a~~~--~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~--~-~~~~---~e~~~e~l~~~l--- 81 (223)
T TIGR00290 13 SCLALYHALKE--HEVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKL--Y-TEGT---EEDEVEELKGIL--- 81 (223)
T ss_pred HHHHHHHHHHh--CeeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEe--e-cCCC---ccHHHHHHHHHH---
Confidence 34455556665 444433222 222 23677889988888999998542 2 2332 356666665544
Q ss_pred HHcCCCEEEEeeecCCC
Q psy7930 92 VESGADGFVIGALTGEQ 108 (146)
Q Consensus 92 ~~~GadG~VfG~L~~dg 108 (146)
+++|++++|||.+..+.
T Consensus 82 ~~~gv~~vv~GdI~s~~ 98 (223)
T TIGR00290 82 HTLDVEAVVFGAIYSEY 98 (223)
T ss_pred HHcCCCEEEECCcccHH
Confidence 45599999999997653
No 96
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=94.32 E-value=0.41 Score=38.28 Aligned_cols=70 Identities=26% Similarity=0.197 Sum_probs=50.3
Q ss_pred HHHHHHHHHcCCCEEEecCCCCCC-CCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHH-HHHcCC
Q psy7930 19 VASALAAVRGGADRLELCAALSEG-GLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQ-FVESGA 96 (146)
Q Consensus 19 ~~~a~~A~~~GAdRIELc~~l~~G-GlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~-~~~~Ga 96 (146)
.+-+..+.+.|++.|.+-+--..| +--|...+++++++.+++||.+ -||-. |. +|+.. +++.|+
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia-----~GGi~--s~-------~di~~~l~~~ga 221 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIA-----LGGAG--SL-------DDLVEVALEAGA 221 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEE-----ECCCC--CH-------HHHHHHHHHcCC
Confidence 566788889999999977622222 2346799999999999999765 24432 44 44455 667899
Q ss_pred CEEEEe
Q psy7930 97 DGFVIG 102 (146)
Q Consensus 97 dG~VfG 102 (146)
|||++|
T Consensus 222 dgV~vg 227 (232)
T TIGR03572 222 SAVAAA 227 (232)
T ss_pred CEEEEe
Confidence 999998
No 97
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.29 E-value=0.32 Score=42.28 Aligned_cols=75 Identities=19% Similarity=0.144 Sum_probs=55.8
Q ss_pred ecCHHHHHHHHHcCCCEEEec--------CCCCCCCCCCCHH--HHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHH
Q psy7930 16 VDSVASALAAVRGGADRLELC--------AALSEGGLTPTLG--LYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMA 85 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc--------~~l~~GGlTPS~g--~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~ 85 (146)
|.|.+++..+.+.|||-|=.. .+...|+-.|.++ .+..+++..++||.. .|+..+.
T Consensus 148 V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIA------dGGI~~~-------- 213 (326)
T PRK05458 148 VGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIA------DGGIRTH-------- 213 (326)
T ss_pred cCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEE------eCCCCCH--------
Confidence 459999999999999997544 2233455568555 488888888888643 3446655
Q ss_pred HHHHHHHHcCCCEEEEeee
Q psy7930 86 LDCHQFVESGADGFVIGAL 104 (146)
Q Consensus 86 ~dI~~~~~~GadG~VfG~L 104 (146)
.||..+..+||+++.+|-+
T Consensus 214 ~Di~KaLa~GA~aV~vG~~ 232 (326)
T PRK05458 214 GDIAKSIRFGATMVMIGSL 232 (326)
T ss_pred HHHHHHHHhCCCEEEechh
Confidence 6888999999999999954
No 98
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=94.27 E-value=0.59 Score=40.91 Aligned_cols=97 Identities=14% Similarity=0.250 Sum_probs=66.5
Q ss_pred cceeEEEecCHHHHHHHHHcCCCEEEecCCC----CCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHH
Q psy7930 9 KTTLEVCVDSVASALAAVRGGADRLELCAAL----SEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIM 84 (146)
Q Consensus 9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l----~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M 84 (146)
+.++=+-+.|++++..|.+.|||-|=+---. ..|...+....++.+++..++||+.+ || - +.
T Consensus 240 ~~iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~iPv~Ai-----GG-I--~~------ 305 (347)
T PRK02615 240 EKIIGRSTTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAPIPWFAI-----GG-I--DK------ 305 (347)
T ss_pred CCEEEEecCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEE-----CC-C--CH------
Confidence 3567888999999999999999998764322 12333456788999988889998765 55 1 11
Q ss_pred HHHHHHHHHcCCCEEEEe-eecCCCCcCHHHHHHHHHH
Q psy7930 85 ALDCHQFVESGADGFVIG-ALTGEQEIDIEFIRQLKTI 121 (146)
Q Consensus 85 ~~dI~~~~~~GadG~VfG-~L~~dg~iD~~~~~~Li~~ 121 (146)
.++..++++|++||+++ ++..... -..+++++.+.
T Consensus 306 -~ni~~l~~~Ga~gVAvisaI~~a~d-p~~~~~~l~~~ 341 (347)
T PRK02615 306 -SNIPEVLQAGAKRVAVVRAIMGAED-PKQATQELLKQ 341 (347)
T ss_pred -HHHHHHHHcCCcEEEEeHHHhCCCC-HHHHHHHHHHH
Confidence 46788889999999664 4554322 22344444443
No 99
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=94.26 E-value=0.26 Score=37.03 Aligned_cols=110 Identities=17% Similarity=0.024 Sum_probs=68.9
Q ss_pred HHHHHcCCCEEEecCCCCCCCCC--CCHHHHHHHHhhCCCcEEEEEccCCCCCcccC---------HHHHHHHHHHHHHH
Q psy7930 23 LAAVRGGADRLELCAALSEGGLT--PTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFS---------QAEKEIMALDCHQF 91 (146)
Q Consensus 23 ~~A~~~GAdRIELc~~l~~GGlT--PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys---------~~E~~~M~~dI~~~ 91 (146)
..|.+.|.+.|||+-.-...-.. .+..-++...+..++.|..+--+ ........ ..-++.|++-++.+
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a 80 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPP-TNFWSPDEENGSANDEREEALEYLKKAIDLA 80 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEE-ESSSCTGTTSTTSSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecc-cccccccccccCcchhhHHHHHHHHHHHHHH
Confidence 46889999999999632111110 12445555556678887766655 22222111 22288999999999
Q ss_pred HHcCCCEEEEeee--cCCCCcCHH--------HHHHHHHHhC--CCCeEEeecc
Q psy7930 92 VESGADGFVIGAL--TGEQEIDIE--------FIRQLKTIIG--DRPITFHRAF 133 (146)
Q Consensus 92 ~~~GadG~VfG~L--~~dg~iD~~--------~~~~Li~~a~--~~~vtFHRAF 133 (146)
+.+|++-+++..= ......+.+ .+++|.+.|. ++.+.++=--
T Consensus 81 ~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~ 134 (213)
T PF01261_consen 81 KRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHP 134 (213)
T ss_dssp HHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SS
T ss_pred HHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEeccc
Confidence 9999999999954 233334433 6677777775 6767766433
No 100
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=94.20 E-value=0.5 Score=39.13 Aligned_cols=92 Identities=20% Similarity=0.145 Sum_probs=60.3
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCC--CCHHHHHHHHhh---CCCcEEEEEccCCCCCc--ccCHHHHHHHHHHHHHHH
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLT--PTLGLYRVIKRL---VLVPVFVMIRVRAGFDF--VFSQAEKEIMALDCHQFV 92 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlT--PS~g~i~~~~~~---~~ipv~vMIRP~R~gdF--~Ys~~E~~~M~~dI~~~~ 92 (146)
.++..|.+.|||-+-+--+. |.+. .-...++++++. .++|+.|+..| +|.++ +|+++++ ..-.+.+.
T Consensus 97 ~~ve~A~~~Gad~v~~~~~~--g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~-~g~~~e~~~~~~~i---~~a~~~a~ 170 (267)
T PRK07226 97 GTVEEAIKLGADAVSVHVNV--GSETEAEMLEDLGEVAEECEEWGMPLLAMMYP-RGPGIKNEYDPEVV---AHAARVAA 170 (267)
T ss_pred ecHHHHHHcCCCEEEEEEec--CChhHHHHHHHHHHHHHHHHHcCCcEEEEEec-CCCccCCCccHHHH---HHHHHHHH
Confidence 45778999999988777553 2222 233444444443 48999999889 77543 3555443 34457778
Q ss_pred HcCCCEEEEeeecCCCCcCHHHHHHHHHHh
Q psy7930 93 ESGADGFVIGALTGEQEIDIEFIRQLKTII 122 (146)
Q Consensus 93 ~~GadG~VfG~L~~dg~iD~~~~~~Li~~a 122 (146)
++|||-+=.+. .-|.+.++++++.+
T Consensus 171 e~GAD~vKt~~-----~~~~~~l~~~~~~~ 195 (267)
T PRK07226 171 ELGADIVKTNY-----TGDPESFREVVEGC 195 (267)
T ss_pred HHCCCEEeeCC-----CCCHHHHHHHHHhC
Confidence 89999886652 23677888887654
No 101
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=94.20 E-value=1.6 Score=36.13 Aligned_cols=118 Identities=16% Similarity=0.229 Sum_probs=74.6
Q ss_pred eeEEEecCHHH----HHHHHHcCCCEEEecCCCCCCCCCCCHH---HHHHHHhhC-CCcEEEEEccC-CCCCcccCHHHH
Q psy7930 11 TLEVCVDSVAS----ALAAVRGGADRLELCAALSEGGLTPTLG---LYRVIKRLV-LVPVFVMIRVR-AGFDFVFSQAEK 81 (146)
Q Consensus 11 ~lEvcv~s~~~----a~~A~~~GAdRIELc~~l~~GGlTPS~g---~i~~~~~~~-~ipv~vMIRP~-R~gdF~Ys~~E~ 81 (146)
.+-+.-.+.++ +.++.+.|||=|||.-.+-. .+.+... .+.++++.. ++|+.+-+|++ -||.|.+++++.
T Consensus 19 ~v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~-~~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eGG~~~~~~~~~ 97 (253)
T PRK02412 19 IVPIMGKTLEEVLAEALAISKYDADIIEWRADFLE-KISDVESVLAAAPAIREKFAGKPLLFTFRTAKEGGEIALSDEEY 97 (253)
T ss_pred EEEeCCCCHHHHHHHHHHHhhcCCCEEEEEechhh-ccCCHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHHH
Confidence 44444566666 55566789999999977543 2322222 333344443 68999999972 368888887766
Q ss_pred HHHHHHHHHHHHcC-CCEEEEeeecCCCCcCHHHHHHHHHHhC--CCCe--EEeecccCCCC
Q psy7930 82 EIMALDCHQFVESG-ADGFVIGALTGEQEIDIEFIRQLKTIIG--DRPI--TFHRAFDVVRE 138 (146)
Q Consensus 82 ~~M~~dI~~~~~~G-adG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~v--tFHRAFD~~~d 138 (146)
..+ ++.+.++| +|-+-+=. ..+.+.+++++..++ +.++ .+| -|+.+++
T Consensus 98 ~~l---l~~~~~~~~~d~vDiEl-----~~~~~~~~~l~~~~~~~~~kvI~S~H-~f~~tP~ 150 (253)
T PRK02412 98 LAL---IKAVIKSGLPDYIDVEL-----FSGKDVVKEMVAFAHEHGVKVVLSYH-DFEKTPP 150 (253)
T ss_pred HHH---HHHHHhcCCCCEEEEec-----cCChHHHHHHHHHHHHcCCEEEEeeC-CCCCCcC
Confidence 554 35556777 77766532 335577888988865 4554 455 5777664
No 102
>PRK08227 autoinducer 2 aldolase; Validated
Probab=94.14 E-value=0.34 Score=41.01 Aligned_cols=65 Identities=20% Similarity=0.245 Sum_probs=47.6
Q ss_pred HHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEE
Q psy7930 21 SALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFV 100 (146)
Q Consensus 21 ~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~V 100 (146)
.++.|.+.|||-|-..= +-..++++.+...+||.+ .||.=. ++.|+-.|.+| +.+.||.|++
T Consensus 163 aaRiaaELGADiVK~~y---------~~~~f~~vv~a~~vPVvi-----aGG~k~-~~~~~L~~v~~---ai~aGa~Gv~ 224 (264)
T PRK08227 163 ATRIAAEMGAQIIKTYY---------VEEGFERITAGCPVPIVI-----AGGKKL-PERDALEMCYQ---AIDEGASGVD 224 (264)
T ss_pred HHHHHHHHcCCEEecCC---------CHHHHHHHHHcCCCcEEE-----eCCCCC-CHHHHHHHHHH---HHHcCCceee
Confidence 47889999999998542 115788888877777754 466666 77777655554 5569999999
Q ss_pred Eee
Q psy7930 101 IGA 103 (146)
Q Consensus 101 fG~ 103 (146)
+|=
T Consensus 225 ~GR 227 (264)
T PRK08227 225 MGR 227 (264)
T ss_pred ech
Confidence 993
No 103
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=94.11 E-value=2 Score=34.32 Aligned_cols=106 Identities=12% Similarity=-0.002 Sum_probs=66.0
Q ss_pred CHH-HHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCc--------ccCH--HH-HHHHH
Q psy7930 18 SVA-SALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDF--------VFSQ--AE-KEIMA 85 (146)
Q Consensus 18 s~~-~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF--------~Ys~--~E-~~~M~ 85 (146)
+++ .+..+.+.|-+-|||-... ......+++..+..++.|..+--| .+++ +.++ .+ .+.++
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~-----~~~~~~l~~~l~~~gl~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY-----DWDAEALKARLAAAGLEQVLFNLP--AGDWAAGERGIACLPGREEEFREGVA 87 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc-----cCCHHHHHHHHHHcCCeEEEEeCC--CCccccCCCccccCCccHHHHHHHHH
Confidence 444 4455688999999996421 345677777777788887665433 2221 2221 22 46777
Q ss_pred HHHHHHHHcCCCEEEEeeecCCCCcCH--------HHHHHHHHHhC--CCCeEEe
Q psy7930 86 LDCHQFVESGADGFVIGALTGEQEIDI--------EFIRQLKTIIG--DRPITFH 130 (146)
Q Consensus 86 ~dI~~~~~~GadG~VfG~L~~dg~iD~--------~~~~~Li~~a~--~~~vtFH 130 (146)
+-|+.++++|+..+++..-..-+..+. +.++++.+.|. |+.+.++
T Consensus 88 ~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE 142 (254)
T TIGR03234 88 LAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIE 142 (254)
T ss_pred HHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 889999999999877643222122221 34777777775 6666665
No 104
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=94.10 E-value=0.76 Score=37.17 Aligned_cols=85 Identities=22% Similarity=0.294 Sum_probs=57.5
Q ss_pred cCHHHHHHHHHcCCCEEE-ecCCCCC-----CCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHH
Q psy7930 17 DSVASALAAVRGGADRLE-LCAALSE-----GGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQ 90 (146)
Q Consensus 17 ~s~~~a~~A~~~GAdRIE-Lc~~l~~-----GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~ 90 (146)
||.-.+..|.+.|- .+. |..-... .--++....++...+..++|+.++--+ + -++.+.+.|..-+..
T Consensus 9 DS~~al~~a~~~G~-~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~--~----~~~~~~~~l~~~l~~ 81 (218)
T TIGR03679 9 DSNYALYKALEEGH-EVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETS--G----EKEKEVEDLKGALKE 81 (218)
T ss_pred HHHHHHHHHHHcCC-EEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECC--C----CChHHHHHHHHHHHH
Confidence 55666777778784 443 3221111 113456777877778889997654433 1 246777788888888
Q ss_pred HHHcCCCEEEEeeecCCC
Q psy7930 91 FVESGADGFVIGALTGEQ 108 (146)
Q Consensus 91 ~~~~GadG~VfG~L~~dg 108 (146)
+++.|++++|+|.+..+.
T Consensus 82 ~~~~g~~~vv~G~i~sd~ 99 (218)
T TIGR03679 82 LKREGVEGIVTGAIASRY 99 (218)
T ss_pred HHHcCCCEEEECCcccHh
Confidence 888899999999988753
No 105
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=94.09 E-value=1.3 Score=36.64 Aligned_cols=109 Identities=21% Similarity=0.294 Sum_probs=72.5
Q ss_pred cceeEEEecCHHHHHHHHH---cCCCEEEecCCCCC-------CCC----CCC--HHHHHHHHhhCCCcEEEEEccCCCC
Q psy7930 9 KTTLEVCVDSVASALAAVR---GGADRLELCAALSE-------GGL----TPT--LGLYRVIKRLVLVPVFVMIRVRAGF 72 (146)
Q Consensus 9 ~~~lEvcv~s~~~a~~A~~---~GAdRIELc~~l~~-------GGl----TPS--~g~i~~~~~~~~ipv~vMIRP~R~g 72 (146)
.+++-|+-.|+++...+.+ .+++-|||+.+-.. +|. .|. ..+++.++ ..++||.|=||| +.
T Consensus 69 ~vivnv~~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~-~~~~PVsvKiR~--~~ 145 (231)
T TIGR00736 69 LVSVNVRFVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMK-ELNKPIFVKIRG--NC 145 (231)
T ss_pred CEEEEEecCCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHH-cCCCcEEEEeCC--CC
Confidence 3577888888888777644 49999999865422 121 332 33455555 348999999999 32
Q ss_pred CcccCHHHHHHHHHHHHHHHHcCCCEEEEeeecCCCC--cCHHHHHHHHHHhCCCCeE
Q psy7930 73 DFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQE--IDIEFIRQLKTIIGDRPIT 128 (146)
Q Consensus 73 dF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~--iD~~~~~~Li~~a~~~~vt 128 (146)
++.+ ...-.+.+.+.|+|++.+=...+ |. .|.+.++++.+..++.|+.
T Consensus 146 ----~~~~---~~~~a~~l~~aGad~i~Vd~~~~-g~~~a~~~~I~~i~~~~~~ipII 195 (231)
T TIGR00736 146 ----IPLD---ELIDALNLVDDGFDGIHVDAMYP-GKPYADMDLLKILSEEFNDKIII 195 (231)
T ss_pred ----Ccch---HHHHHHHHHHcCCCEEEEeeCCC-CCchhhHHHHHHHHHhcCCCcEE
Confidence 2211 22345567899999998854443 33 7999999998876556543
No 106
>PLN02535 glycolate oxidase
Probab=94.09 E-value=0.27 Score=43.29 Aligned_cols=77 Identities=18% Similarity=0.177 Sum_probs=56.4
Q ss_pred eeEEEecCHHHHHHHHHcCCCEEEecCC--CCCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930 11 TLEVCVDSVASALAAVRGGADRLELCAA--LSEGGLTPTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMAL 86 (146)
Q Consensus 11 ~lEvcv~s~~~a~~A~~~GAdRIELc~~--l~~GGlTPS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~ 86 (146)
++|| -+.+++..|.+.|+|-|-+... -..++..|+...+.++++.+ ++||.+ .|++... .
T Consensus 228 vKgV--~~~~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~------dGGIr~g--------~ 291 (364)
T PLN02535 228 IKGV--LTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLL------DGGVRRG--------T 291 (364)
T ss_pred EecC--CCHHHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEe------eCCCCCH--------H
Confidence 4555 7899999999999999988753 12333445677888887765 578653 3335544 6
Q ss_pred HHHHHHHcCCCEEEEee
Q psy7930 87 DCHQFVESGADGFVIGA 103 (146)
Q Consensus 87 dI~~~~~~GadG~VfG~ 103 (146)
||..+..+||++|.+|-
T Consensus 292 Dv~KALalGA~aV~vGr 308 (364)
T PLN02535 292 DVFKALALGAQAVLVGR 308 (364)
T ss_pred HHHHHHHcCCCEEEECH
Confidence 88899999999999983
No 107
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=94.03 E-value=0.3 Score=43.18 Aligned_cols=74 Identities=22% Similarity=0.281 Sum_probs=56.8
Q ss_pred ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCC-----CCHHHHHHHHhhCC--CcEEEEEccCCCCCcccCHHHHH
Q psy7930 10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLT-----PTLGLYRVIKRLVL--VPVFVMIRVRAGFDFVFSQAEKE 82 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlT-----PS~g~i~~~~~~~~--ipv~vMIRP~R~gdF~Ys~~E~~ 82 (146)
+++|| -+.+++..|.+.|+|-|-+-.+ ||-. |+...+.++++.++ +||.+ .|++.+.
T Consensus 228 ivKgV--~~~~dA~~a~~~Gvd~I~Vsnh---GGrqld~~~~t~~~L~ei~~av~~~~~vi~------dGGIr~G----- 291 (367)
T PLN02493 228 LVKGV--LTGEDARIAIQAGAAGIIVSNH---GARQLDYVPATISALEEVVKATQGRIPVFL------DGGVRRG----- 291 (367)
T ss_pred EeecC--CCHHHHHHHHHcCCCEEEECCC---CCCCCCCchhHHHHHHHHHHHhCCCCeEEE------eCCcCcH-----
Confidence 36787 4899999999999999987654 4444 67888888877653 66543 3446665
Q ss_pred HHHHHHHHHHHcCCCEEEEe
Q psy7930 83 IMALDCHQFVESGADGFVIG 102 (146)
Q Consensus 83 ~M~~dI~~~~~~GadG~VfG 102 (146)
.||..+..+||+++-+|
T Consensus 292 ---~Dv~KALALGA~aV~iG 308 (367)
T PLN02493 292 ---TDVFKALALGASGIFIG 308 (367)
T ss_pred ---HHHHHHHHcCCCEEEEc
Confidence 68888999999999998
No 108
>PLN02591 tryptophan synthase
Probab=93.92 E-value=0.49 Score=39.57 Aligned_cols=90 Identities=17% Similarity=0.190 Sum_probs=59.8
Q ss_pred HHHHHHHHcCCCEEEecC---CC--------------CCCCCCC--CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHH
Q psy7930 20 ASALAAVRGGADRLELCA---AL--------------SEGGLTP--TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAE 80 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~---~l--------------~~GGlTP--S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E 80 (146)
+-+..-.++|||-|||-= +. -..|+|. .+.+++++++..++|+.+|--= .-=|.|.-+.
T Consensus 20 ~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~--N~i~~~G~~~ 97 (250)
T PLN02591 20 EALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYY--NPILKRGIDK 97 (250)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecc--cHHHHhHHHH
Confidence 345567889999999962 22 1234554 4677888887788998888642 1125555444
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930 81 KEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 81 ~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~ 123 (146)
| ++.++++|+||+++= | +-.+...++.+.|+
T Consensus 98 F------~~~~~~aGv~Gviip----D--LP~ee~~~~~~~~~ 128 (250)
T PLN02591 98 F------MATIKEAGVHGLVVP----D--LPLEETEALRAEAA 128 (250)
T ss_pred H------HHHHHHcCCCEEEeC----C--CCHHHHHHHHHHHH
Confidence 4 678899999998764 3 34466677777765
No 109
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=93.88 E-value=0.75 Score=41.84 Aligned_cols=97 Identities=16% Similarity=0.253 Sum_probs=64.8
Q ss_pred cceeEEEec----CHHHHHHHHHcCCCEEEecCCCCCCCCCC-CHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHH
Q psy7930 9 KTTLEVCVD----SVASALAAVRGGADRLELCAALSEGGLTP-TLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKE 82 (146)
Q Consensus 9 ~~~lEvcv~----s~~~a~~A~~~GAdRIELc~~l~~GGlTP-S~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~ 82 (146)
+.++-+++. ..+-+.+..++|+|-|++-.+ .|.|+ ....++++++.. ++||.+ | -+.|.
T Consensus 229 rL~Vgaavg~~~~~~~~~~~l~~ag~d~i~id~a---~G~s~~~~~~i~~ik~~~~~~~v~a-------G-~V~t~---- 293 (495)
T PTZ00314 229 QLLVGAAISTRPEDIERAAALIEAGVDVLVVDSS---QGNSIYQIDMIKKLKSNYPHVDIIA-------G-NVVTA---- 293 (495)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCCEEEEecC---CCCchHHHHHHHHHHhhCCCceEEE-------C-CcCCH----
Confidence 445555553 357788889999999999864 57666 467899988875 455543 2 34443
Q ss_pred HHHHHHHHHHHcCCCEEEEee------ecC----CCCcCHHHHHHHHHHhC
Q psy7930 83 IMALDCHQFVESGADGFVIGA------LTG----EQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 83 ~M~~dI~~~~~~GadG~VfG~------L~~----dg~iD~~~~~~Li~~a~ 123 (146)
++.+.+.++|||+|.+|. .|. -|--...++.++.+.++
T Consensus 294 ---~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~ 341 (495)
T PTZ00314 294 ---DQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYAR 341 (495)
T ss_pred ---HHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHh
Confidence 456677889999999873 232 23334556666666665
No 110
>PLN02979 glycolate oxidase
Probab=93.88 E-value=0.33 Score=42.96 Aligned_cols=74 Identities=22% Similarity=0.281 Sum_probs=55.9
Q ss_pred ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCC-----CCHHHHHHHHhhCC--CcEEEEEccCCCCCcccCHHHHH
Q psy7930 10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLT-----PTLGLYRVIKRLVL--VPVFVMIRVRAGFDFVFSQAEKE 82 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlT-----PS~g~i~~~~~~~~--ipv~vMIRP~R~gdF~Ys~~E~~ 82 (146)
+++|| .+.++|..|.+.|+|-|-+-.+ ||-. |+...+.++++.++ +||.+ .|++.+.
T Consensus 227 ivKgV--~~~~dA~~a~~~Gvd~I~Vsnh---GGrqld~~p~t~~~L~ei~~~~~~~~~Vi~------dGGIr~G----- 290 (366)
T PLN02979 227 LVKGV--LTGEDARIAIQAGAAGIIVSNH---GARQLDYVPATISALEEVVKATQGRIPVFL------DGGVRRG----- 290 (366)
T ss_pred EeecC--CCHHHHHHHHhcCCCEEEECCC---CcCCCCCchhHHHHHHHHHHHhCCCCeEEE------eCCcCcH-----
Confidence 46777 4899999999999999977654 4444 56777777776654 56542 3446666
Q ss_pred HHHHHHHHHHHcCCCEEEEe
Q psy7930 83 IMALDCHQFVESGADGFVIG 102 (146)
Q Consensus 83 ~M~~dI~~~~~~GadG~VfG 102 (146)
.||..+..+|||++-+|
T Consensus 291 ---~Di~KALALGAdaV~iG 307 (366)
T PLN02979 291 ---TDVFKALALGASGIFIG 307 (366)
T ss_pred ---HHHHHHHHcCCCEEEEc
Confidence 68889999999999998
No 111
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=93.83 E-value=1.2 Score=37.62 Aligned_cols=91 Identities=10% Similarity=0.133 Sum_probs=72.0
Q ss_pred HHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930 19 VASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG 98 (146)
Q Consensus 19 ~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG 98 (146)
.+-|..=++.||++|.|.+= |-. ...+++++.+.+++||.+ ||+-. . ++++.+.++||+.
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL----g~~-n~~~i~~i~~~~~~~v~v------GGGIr-------~--e~v~~~l~aGa~r 100 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML----GPN-NDDAAKEALHAYPGGLQV------GGGIN-------D--TNAQEWLDEGASH 100 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC----CCC-cHHHHHHHHHhCCCCEEE------eCCcC-------H--HHHHHHHHcCCCE
Confidence 57888888999999999974 655 999999999998888753 44332 1 6788999999999
Q ss_pred EEEeeec-CCCCcCHHHHHHHHHHhCCCCeEE
Q psy7930 99 FVIGALT-GEQEIDIEFIRQLKTIIGDRPITF 129 (146)
Q Consensus 99 ~VfG~L~-~dg~iD~~~~~~Li~~a~~~~vtF 129 (146)
+++|-.- .+..++.+.++++.+.-++=.++.
T Consensus 101 VvIGS~av~~~~i~~~~~~~i~~~fG~~~Ivv 132 (253)
T TIGR02129 101 VIVTSWLFTKGKFDLKRLKEIVSLVGKDRLIV 132 (253)
T ss_pred EEECcHHHhCCCCCHHHHHHHHHHhCCCCEEE
Confidence 9999532 466789999999999886545544
No 112
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=93.77 E-value=0.34 Score=42.99 Aligned_cols=70 Identities=17% Similarity=0.122 Sum_probs=46.4
Q ss_pred HHHHHHcCCCEEEecCCCCC------C----CCCCC--HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930 22 ALAAVRGGADRLELCAALSE------G----GLTPT--LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH 89 (146)
Q Consensus 22 a~~A~~~GAdRIELc~~l~~------G----GlTPS--~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~ 89 (146)
+...++.|||-|||+=+-.. + |-+|. ..+++.+++..++||.|=|-| .-. .+..=++
T Consensus 133 a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLsP-n~t----------~i~~ia~ 201 (385)
T PLN02495 133 IERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKMTP-NIT----------DITQPAR 201 (385)
T ss_pred HHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEeCC-Chh----------hHHHHHH
Confidence 44667889999999753211 1 23431 234466677778999999999 221 1444556
Q ss_pred HHHHcCCCEEEEe
Q psy7930 90 QFVESGADGFVIG 102 (146)
Q Consensus 90 ~~~~~GadG~VfG 102 (146)
.+.+.|||||+.-
T Consensus 202 aa~~~Gadgi~li 214 (385)
T PLN02495 202 VALKSGCEGVAAI 214 (385)
T ss_pred HHHHhCCCEEEEe
Confidence 6889999999974
No 113
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=93.75 E-value=1.1 Score=36.60 Aligned_cols=89 Identities=22% Similarity=0.271 Sum_probs=63.1
Q ss_pred CH-HHHHHHHHcCCCEEEecCCCCC-CCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930 18 SV-ASALAAVRGGADRLELCAALSE-GGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG 95 (146)
Q Consensus 18 s~-~~a~~A~~~GAdRIELc~~l~~-GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G 95 (146)
++ +=+....+.||++|-+.+--.. .+-.+...+++++++.+++||.+ +|+.. |. +|++.+.+.|
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~~ipv~~------~GGi~-s~-------~~~~~~l~~G 96 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQVFIPLTV------GGGIR-SV-------EDARRLLRAG 96 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHhCCCCEEe------eCCCC-CH-------HHHHHHHHcC
Confidence 45 4556667889999999975433 35578899999999999999865 33333 22 5666677789
Q ss_pred CCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930 96 ADGFVIGALTGEQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 96 adG~VfG~L~~dg~iD~~~~~~Li~~a~ 123 (146)
++++++|--.- -|.+.++++.+..+
T Consensus 97 a~~Viigt~~l---~~p~~~~ei~~~~g 121 (253)
T PRK02083 97 ADKVSINSAAV---ANPELISEAADRFG 121 (253)
T ss_pred CCEEEEChhHh---hCcHHHHHHHHHcC
Confidence 99999995432 25567777777653
No 114
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=93.74 E-value=1.9 Score=32.91 Aligned_cols=110 Identities=14% Similarity=0.095 Sum_probs=63.5
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCC-CCHHHHHHHHhhC-CCcEEE--EEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLT-PTLGLYRVIKRLV-LVPVFV--MIRVRAGFDFVFSQAEKEIMALDCHQFVESG 95 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlT-PS~g~i~~~~~~~-~ipv~v--MIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G 95 (146)
+.+..+.++|..-+.-......++.. .+...+.++.+.. ++-+.. .+.+ +.... .+...+...+.+....+.|
T Consensus 39 ~~~~~~~~~Gvttv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~i~~~~~~~ 115 (275)
T cd01292 39 RALEALLAGGVTTVVDMGSTPPPTTTKAAIEAVAEAARASAGIRVVLGLGIPG-VPAAV--DEDAEALLLELLRRGLELG 115 (275)
T ss_pred HHHHHHHhcCceEEEeeEeecCccccchHHHHHHHHHHHhcCeeeEEeccCCC-Ccccc--chhHHHHHHHHHHHHHhcC
Confidence 45567889998888876543322221 2333333333333 322222 1222 22211 3344556667777777678
Q ss_pred CCEEEEeeecCCCCcCHHHHHHHHHHhC--CCCeEEeec
Q psy7930 96 ADGFVIGALTGEQEIDIEFIRQLKTIIG--DRPITFHRA 132 (146)
Q Consensus 96 adG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~vtFHRA 132 (146)
+.|+=+.........+.+.++++++.|+ ++++++|-.
T Consensus 116 ~~gi~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~H~~ 154 (275)
T cd01292 116 AVGLKLAGPYTATGLSDESLRRVLEEARKLGLPVVIHAG 154 (275)
T ss_pred CeeEeeCCCCCCCCCCcHHHHHHHHHHHHcCCeEEEeeC
Confidence 8888555433333358889999998887 889999964
No 115
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=93.68 E-value=0.61 Score=38.06 Aligned_cols=89 Identities=20% Similarity=0.225 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCCEEEecCCCCCCCCC-CCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930 19 VASALAAVRGGADRLELCAALSEGGLT-PTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD 97 (146)
Q Consensus 19 ~~~a~~A~~~GAdRIELc~~l~~GGlT-PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad 97 (146)
.+=+...++.|++.+=+-+--..|..+ |...+++++++.+++||.+ .||=+ |.+++..+. .+.+.|++
T Consensus 149 ~~~~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~~ipvia-----sGGi~--s~~D~~~l~----~~~~~Gvd 217 (241)
T PRK14024 149 WEVLERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCARTDAPVVA-----SGGVS--SLDDLRALA----ELVPLGVE 217 (241)
T ss_pred HHHHHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhhCCCCEEE-----eCCCC--CHHHHHHHh----hhccCCcc
Confidence 344677889999999888754444332 6889999999999999865 46644 443433321 11246999
Q ss_pred EEEEeeecCCCCcCHHHHHHH
Q psy7930 98 GFVIGALTGEQEIDIEFIRQL 118 (146)
Q Consensus 98 G~VfG~L~~dg~iD~~~~~~L 118 (146)
|+++|=---+|.++.+...+.
T Consensus 218 gV~igra~~~g~~~~~~~~~~ 238 (241)
T PRK14024 218 GAIVGKALYAGAFTLPEALAV 238 (241)
T ss_pred EEEEeHHHHcCCCCHHHHHHH
Confidence 999997777888988865543
No 116
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=93.68 E-value=2.4 Score=33.55 Aligned_cols=101 Identities=13% Similarity=0.205 Sum_probs=66.1
Q ss_pred ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCC-----c----ccCHHHHHHHHH
Q psy7930 16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFD-----F----VFSQAEKEIMAL 86 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gd-----F----~Ys~~E~~~M~~ 86 (146)
+.|.+++..+.+.||+++=|-+.+.. +...++++.+...-.+.+-|=. |.|- + ..+..|
T Consensus 83 I~~~ed~~~~~~~Ga~~vilg~~~l~-----~~~~l~ei~~~~~~~i~vsid~-k~~~v~~~g~~~~~~~~~~e------ 150 (233)
T PRK00748 83 IRSLETVEALLDAGVSRVIIGTAAVK-----NPELVKEACKKFPGKIVVGLDA-RDGKVATDGWLETSGVTAED------ 150 (233)
T ss_pred cCCHHHHHHHHHcCCCEEEECchHHh-----CHHHHHHHHHHhCCCceeeeec-cCCEEEEccCeecCCCCHHH------
Confidence 46789999999999999977665443 4456777766542223233333 2211 1 122223
Q ss_pred HHHHHHHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeEE
Q psy7930 87 DCHQFVESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPITF 129 (146)
Q Consensus 87 dI~~~~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vtF 129 (146)
-++.+.++|++.+++=-.+.+|+ .|.+.++++.+... .|+.-
T Consensus 151 ~~~~~~~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~-ipvia 195 (233)
T PRK00748 151 LAKRFEDAGVKAIIYTDISRDGTLSGPNVEATRELAAAVP-IPVIA 195 (233)
T ss_pred HHHHHHhcCCCEEEEeeecCcCCcCCCCHHHHHHHHHhCC-CCEEE
Confidence 36677889999988777887764 89999999988753 66654
No 117
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=93.60 E-value=0.94 Score=34.03 Aligned_cols=90 Identities=18% Similarity=0.202 Sum_probs=56.8
Q ss_pred HHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC---CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930 22 ALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV---LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG 98 (146)
Q Consensus 22 a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~---~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG 98 (146)
+..+.++|++-|+++. ++++.+++.. ++||.+=+-. ..+. .-.+...+.++.++++|+|+
T Consensus 19 ~~~~~~~gv~gi~~~g-----------~~i~~~~~~~~~~~~~v~~~v~~-~~~~-----~~~~~~~~~a~~a~~~Gad~ 81 (201)
T cd00945 19 CDEAIEYGFAAVCVNP-----------GYVRLAADALAGSDVPVIVVVGF-PTGL-----TTTEVKVAEVEEAIDLGADE 81 (201)
T ss_pred HHHHHHhCCcEEEECH-----------HHHHHHHHHhCCCCCeEEEEecC-CCCC-----CcHHHHHHHHHHHHHcCCCE
Confidence 4456778999999884 7888887765 3777665544 2222 22466678889999999999
Q ss_pred EEEeeecCCCCcC------HHHHHHHHHHh-CCCCeEE
Q psy7930 99 FVIGALTGEQEID------IEFIRQLKTII-GDRPITF 129 (146)
Q Consensus 99 ~VfG~L~~dg~iD------~~~~~~Li~~a-~~~~vtF 129 (146)
+.+-. ......+ .+..+++.+.+ .++|+..
T Consensus 82 i~v~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~i 118 (201)
T cd00945 82 IDVVI-NIGSLKEGDWEEVLEEIAAVVEAADGGLPLKV 118 (201)
T ss_pred EEEec-cHHHHhCCCHHHHHHHHHHHHHHhcCCceEEE
Confidence 98742 1111122 34445566665 4677554
No 118
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=93.59 E-value=0.81 Score=38.15 Aligned_cols=102 Identities=15% Similarity=0.138 Sum_probs=71.1
Q ss_pred HHHHHHcCCCEEEecCCCCC------CCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930 22 ALAAVRGGADRLELCAALSE------GGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES 94 (146)
Q Consensus 22 a~~A~~~GAdRIELc~~l~~------GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~ 94 (146)
+..-.+.|.+.||.-..-.. =+-+| ...++.+++.. +.++.++.|. .. -+.|+....+.++.||+...+.
T Consensus 27 a~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~-~e~i~~~~~~~~~~~l~~~~r~-~~-~~~~~~~p~~~~~~di~~~~~~ 103 (275)
T cd07937 27 AEALDEAGFFSLEVWGGATFDVCMRFLNEDP-WERLRELRKAMPNTPLQMLLRG-QN-LVGYRHYPDDVVELFVEKAAKN 103 (275)
T ss_pred HHHHHHcCCCEEEccCCcchhhhccccCCCH-HHHHHHHHHhCCCCceehhccc-cc-ccCccCCCcHHHHHHHHHHHHc
Confidence 44556789999998741100 03333 45566666543 6789999987 43 3667777888889999999999
Q ss_pred CCCEEEEeeecCCCCcCHHHHHHHHHHhC--CCCeEEe
Q psy7930 95 GADGFVIGALTGEQEIDIEFIRQLKTIIG--DRPITFH 130 (146)
Q Consensus 95 GadG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~vtFH 130 (146)
|++.|-+.+=.. |.+.+.+.++.|+ |+.+.|+
T Consensus 104 g~~~iri~~~~~----~~~~~~~~i~~ak~~G~~v~~~ 137 (275)
T cd07937 104 GIDIFRIFDALN----DVRNLEVAIKAVKKAGKHVEGA 137 (275)
T ss_pred CCCEEEEeecCC----hHHHHHHHHHHHHHCCCeEEEE
Confidence 999987764222 4778888888887 6666654
No 119
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=93.56 E-value=1.1 Score=35.77 Aligned_cols=111 Identities=19% Similarity=0.184 Sum_probs=70.7
Q ss_pred eEEEe----cCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC-CcEEEEEccCCCCCcccCHH---HHHH
Q psy7930 12 LEVCV----DSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL-VPVFVMIRVRAGFDFVFSQA---EKEI 83 (146)
Q Consensus 12 lEvcv----~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~-ipv~vMIRP~R~gdF~Ys~~---E~~~ 83 (146)
+-+.+ .|.+++..+.+.||+++-+-+.+ -++..+++++.+..+ -.+.+-|-. +.|....... .-..
T Consensus 77 ~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~-----~~~~~~~~~i~~~~g~~~i~~sid~-~~~~v~~~g~~~~~~~~ 150 (241)
T PRK13585 77 VPVQLGGGIRSAEDAASLLDLGVDRVILGTAA-----VENPEIVRELSEEFGSERVMVSLDA-KDGEVVIKGWTEKTGYT 150 (241)
T ss_pred CcEEEcCCcCCHHHHHHHHHcCCCEEEEChHH-----hhChHHHHHHHHHhCCCcEEEEEEe-eCCEEEECCCcccCCCC
Confidence 44555 78999999999999999886543 235677888877652 234444443 3322221100 0001
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeEE
Q psy7930 84 MALDCHQFVESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPITF 129 (146)
Q Consensus 84 M~~dI~~~~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vtF 129 (146)
..+-++.+.+.|++.+++--.+.+|. .|.+.++++.+.. ++|++.
T Consensus 151 ~~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~-~iPvia 198 (241)
T PRK13585 151 PVEAAKRFEELGAGSILFTNVDVEGLLEGVNTEPVKELVDSV-DIPVIA 198 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHhC-CCCEEE
Confidence 23445666789999999877777653 7888888888866 466554
No 120
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=93.54 E-value=1.2 Score=36.48 Aligned_cols=107 Identities=8% Similarity=0.067 Sum_probs=76.5
Q ss_pred ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHH----HHHHHHHH
Q psy7930 16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEI----MALDCHQF 91 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~----M~~dI~~~ 91 (146)
+.|++++....+.||+|+=+.+... -++.+++++.+..+=.|.+-|-- +.| .+++..-.+. ..+=++.+
T Consensus 85 Irs~e~v~~~l~~Ga~kvvigt~a~-----~~~~~l~~~~~~fg~~ivvslD~-~~g-~v~~~gw~~~~~~~~~~~~~~~ 157 (234)
T PRK13587 85 IRTKSQIMDYFAAGINYCIVGTKGI-----QDTDWLKEMAHTFPGRIYLSVDA-YGE-DIKVNGWEEDTELNLFSFVRQL 157 (234)
T ss_pred cCCHHHHHHHHHCCCCEEEECchHh-----cCHHHHHHHHHHcCCCEEEEEEe-eCC-EEEecCCcccCCCCHHHHHHHH
Confidence 4689999999999999997665321 26789999988775457777776 655 2222111111 13346677
Q ss_pred HHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeEEe
Q psy7930 92 VESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPITFH 130 (146)
Q Consensus 92 ~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vtFH 130 (146)
.++|+.++++=-++.||+ .|.+.++++.+.. +.|+...
T Consensus 158 ~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~-~ipvi~~ 198 (234)
T PRK13587 158 SDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKAT-TIPVIAS 198 (234)
T ss_pred HHcCCCEEEEecccCcCCCCccCHHHHHHHHHhC-CCCEEEe
Confidence 889999999999999985 7899999998864 5666654
No 121
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=93.54 E-value=1.2 Score=38.77 Aligned_cols=112 Identities=23% Similarity=0.244 Sum_probs=83.5
Q ss_pred cceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCC----CC---HHHHHHHHhhCC-CcEEEEEccCCCCCcccCHHH
Q psy7930 9 KTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLT----PT---LGLYRVIKRLVL-VPVFVMIRVRAGFDFVFSQAE 80 (146)
Q Consensus 9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlT----PS---~g~i~~~~~~~~-ipv~vMIRP~R~gdF~Ys~~E 80 (146)
..++...+-|...+..+++.|+|=|= |...+.||-+ ++ ..++.++++.++ |||.. -|| ....
T Consensus 127 g~~v~~~v~~~~~A~~~~~~G~d~vI-~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViA-----AGG-I~dg--- 196 (336)
T COG2070 127 GIKVIHSVITVREALKAERAGADAVI-AQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIA-----AGG-IADG--- 196 (336)
T ss_pred CCeEEEEeCCHHHHHHHHhCCCCEEE-ecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEE-----ecC-ccCh---
Confidence 46788899999999999999999774 4445566652 23 567888888888 89854 244 5443
Q ss_pred HHHHHHHHHHHHHcCCCEEEEe---eecCCCCcCHHHHHHHHHHhCCCCeEEeecccCC
Q psy7930 81 KEIMALDCHQFVESGADGFVIG---ALTGEQEIDIEFIRQLKTIIGDRPITFHRAFDVV 136 (146)
Q Consensus 81 ~~~M~~dI~~~~~~GadG~VfG---~L~~dg~iD~~~~~~Li~~a~~~~vtFHRAFD~~ 136 (146)
++|..+..+||+||.+| ..|.+.... +.-|+.+-.|..-..+.=++|+-.
T Consensus 197 -----~~i~AAlalGA~gVq~GT~Fl~t~Ea~a~-~~~K~~l~~a~~~Dtv~~~~~~G~ 249 (336)
T COG2070 197 -----RGIAAALALGADGVQMGTRFLATKEADAS-DAYKQALLQATEDDTVLTKSFTGK 249 (336)
T ss_pred -----HHHHHHHHhccHHHHhhhhhhcccccCCC-HHHHHHHhcccccCeEEEcccCCC
Confidence 67778888999999999 346666666 777888888887777776777654
No 122
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=93.53 E-value=1.5 Score=35.82 Aligned_cols=89 Identities=18% Similarity=0.208 Sum_probs=64.2
Q ss_pred cCHHHHHHHHHcCCCEEEecCC-CCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930 17 DSVASALAAVRGGADRLELCAA-LSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG 95 (146)
Q Consensus 17 ~s~~~a~~A~~~GAdRIELc~~-l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G 95 (146)
.++.+.....+..++++=+.+- =...|..|...+++++.+.+++||.+ +|+.. | .+|++.+.++|
T Consensus 30 ~dp~~~a~~~~~~~~~l~ivDldga~~g~~~n~~~i~~i~~~~~~pv~~------gGGIr-s-------~edv~~l~~~G 95 (228)
T PRK04128 30 GDPVEIALRFSEYVDKIHVVDLDGAFEGKPKNLDVVKNIIRETGLKVQV------GGGLR-T-------YESIKDAYEIG 95 (228)
T ss_pred CCHHHHHHHHHHhCCEEEEEECcchhcCCcchHHHHHHHHhhCCCCEEE------cCCCC-C-------HHHHHHHHHCC
Confidence 3666665555444999988542 13458889999999999988899876 33222 2 25777788899
Q ss_pred CCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930 96 ADGFVIGALTGEQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 96 adG~VfG~L~~dg~iD~~~~~~Li~~a~ 123 (146)
++++|+| +.- +|.+.++++.+..+
T Consensus 96 ~~~vivG--taa--~~~~~l~~~~~~~g 119 (228)
T PRK04128 96 VENVIIG--TKA--FDLEFLEKVTSEFE 119 (228)
T ss_pred CCEEEEC--chh--cCHHHHHHHHHHcC
Confidence 9999999 433 38889999988774
No 123
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=93.48 E-value=0.13 Score=39.78 Aligned_cols=90 Identities=19% Similarity=0.247 Sum_probs=53.3
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEE
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGF 99 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~ 99 (146)
+.+..+.++|++=|.|-. .+++. ....+.+++ +..++++ ++..|.+++ +++.+.+.|+|||
T Consensus 17 ~~~~~~~~~g~~~v~lR~----~~~~~-~~~~~~~~~-----l~~~~~~-~~~~l~i~~--------~~~la~~~g~~Gv 77 (196)
T TIGR00693 17 NRVEAALKGGVTLVQLRD----KGSNT-RERLALAEK-----LQELCRR-YGVPFIVND--------RVDLALALGADGV 77 (196)
T ss_pred HHHHHHHhcCCCEEEEec----CCCCH-HHHHHHHHH-----HHHHHHH-hCCeEEEEC--------HHHHHHHcCCCEE
Confidence 456678899999887753 34333 222222222 1224456 666677664 5678899999999
Q ss_pred EEeeecCCCCcCHHHHHHHHHHhCCCCeEEeec
Q psy7930 100 VIGALTGEQEIDIEFIRQLKTIIGDRPITFHRA 132 (146)
Q Consensus 100 VfG~L~~dg~iD~~~~~~Li~~a~~~~vtFHRA 132 (146)
.+| ++.++.+..++++.....+.+++|+.
T Consensus 78 Hl~----~~~~~~~~~r~~~~~~~~ig~s~h~~ 106 (196)
T TIGR00693 78 HLG----QDDLPASEARALLGPDKIIGVSTHNL 106 (196)
T ss_pred ecC----cccCCHHHHHHhcCCCCEEEEeCCCH
Confidence 998 33466666665553333344555544
No 124
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=93.47 E-value=0.66 Score=38.09 Aligned_cols=97 Identities=21% Similarity=0.194 Sum_probs=63.4
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCCCHH---HHHHHHhh---CCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHH
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTPTLG---LYRVIKRL---VLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVE 93 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g---~i~~~~~~---~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~ 93 (146)
.++..|.+.||+-|-+-.+.. . ..... .++++++. .++|+.+++-| +|-...+.+ .+...+..+.+.+
T Consensus 94 ~~v~~al~~Ga~~v~~~~~~g--~-~~~~~~~~~~~~i~~~~~~~g~~liv~~~~-~Gvh~~~~~--~~~~~~~~~~a~~ 167 (258)
T TIGR01949 94 TTVEDAIRMGADAVSIHVNVG--S-DTEWEQIRDLGMIAEICDDWGVPLLAMMYP-RGPHIDDRD--PELVAHAARLGAE 167 (258)
T ss_pred eeHHHHHHCCCCEEEEEEecC--C-chHHHHHHHHHHHHHHHHHcCCCEEEEEec-cCccccccc--HHHHHHHHHHHHH
Confidence 357789999999888876632 2 22223 33333333 48999998778 776555422 2344444678889
Q ss_pred cCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeE
Q psy7930 94 SGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPIT 128 (146)
Q Consensus 94 ~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vt 128 (146)
+|||-+-++. ..|.+.++++++.+ ++|+.
T Consensus 168 ~GADyikt~~-----~~~~~~l~~~~~~~-~iPVv 196 (258)
T TIGR01949 168 LGADIVKTPY-----TGDIDSFRDVVKGC-PAPVV 196 (258)
T ss_pred HCCCEEeccC-----CCCHHHHHHHHHhC-CCcEE
Confidence 9999988863 35888888888754 35553
No 125
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=93.43 E-value=1.2 Score=36.52 Aligned_cols=95 Identities=23% Similarity=0.271 Sum_probs=67.6
Q ss_pred CH-HHHHHHHHcCCCEEEecCCCCCC-CCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930 18 SV-ASALAAVRGGADRLELCAALSEG-GLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG 95 (146)
Q Consensus 18 s~-~~a~~A~~~GAdRIELc~~l~~G-GlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G 95 (146)
++ +-|....+.||+++-+.+--..+ +-.+...+++.+++.+++||.+ -|| . .|. +|++.+.++|
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~-----~GG-i-~s~-------~d~~~~~~~G 96 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAETVFIPLTV-----GGG-I-KSI-------EDVDKLLRAG 96 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEE-----ECC-C-CCH-------HHHHHHHHcC
Confidence 55 55666778899999988744343 6678899999999999999866 233 2 222 5777788889
Q ss_pred CCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEE
Q psy7930 96 ADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITF 129 (146)
Q Consensus 96 adG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtF 129 (146)
++++++|--.-. |.+.++++.+..+.-.+++
T Consensus 97 a~~vivgt~~~~---~p~~~~~~~~~~~~~~iv~ 127 (254)
T TIGR00735 97 ADKVSINTAAVK---NPELIYELADRFGSQCIVV 127 (254)
T ss_pred CCEEEEChhHhh---ChHHHHHHHHHcCCCCEEE
Confidence 999999954432 5778888877764344554
No 126
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=93.38 E-value=0.93 Score=36.23 Aligned_cols=106 Identities=18% Similarity=0.215 Sum_probs=69.8
Q ss_pred ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC---CcEEEEEccCC--CC-CcccCHH----HHHHHH
Q psy7930 16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL---VPVFVMIRVRA--GF-DFVFSQA----EKEIMA 85 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~---ipv~vMIRP~R--~g-dF~Ys~~----E~~~M~ 85 (146)
+.|++++..+.+.|++++=+.+.+. .+..+++++.+..+ +++.+=+|. . ++ ..++++. -.....
T Consensus 83 i~~~~d~~~~~~~G~~~vilg~~~l-----~~~~~~~~~~~~~~~~~i~vsld~~~-~~~~~~~~v~~~~~~~~~~~~~~ 156 (232)
T TIGR03572 83 IRSLEDAKKLLSLGADKVSINTAAL-----ENPDLIEEAARRFGSQCVVVSIDVKK-ELDGSDYKVYSDNGRRATGRDPV 156 (232)
T ss_pred CCCHHHHHHHHHcCCCEEEEChhHh-----cCHHHHHHHHHHcCCceEEEEEEecc-CCCCCcEEEEECCCcccCCCCHH
Confidence 4688999999999999997775433 34678888887654 333333444 2 11 1222211 011123
Q ss_pred HHHHHHHHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeE
Q psy7930 86 LDCHQFVESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPIT 128 (146)
Q Consensus 86 ~dI~~~~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vt 128 (146)
+-++.+.+.|+|.+++--++.+|+ .|.+.++++.+.. ++|+.
T Consensus 157 ~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~-~ipvi 201 (232)
T TIGR03572 157 EWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAV-SIPVI 201 (232)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhC-CCCEE
Confidence 556788899999999988888753 7899999988865 45654
No 127
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=93.37 E-value=3.4 Score=33.07 Aligned_cols=110 Identities=21% Similarity=0.255 Sum_probs=68.0
Q ss_pred CHHHHHHHHHc--CCCEEEecCCCCCC-CCCCCHHHHHHHHhhCCCcEEEEEccC-CCCCcccCHHHHHHHHHHHHHHHH
Q psy7930 18 SVASALAAVRG--GADRLELCAALSEG-GLTPTLGLYRVIKRLVLVPVFVMIRVR-AGFDFVFSQAEKEIMALDCHQFVE 93 (146)
Q Consensus 18 s~~~a~~A~~~--GAdRIELc~~l~~G-GlTPS~g~i~~~~~~~~ipv~vMIRP~-R~gdF~Ys~~E~~~M~~dI~~~~~ 93 (146)
+.+++....+. |||-|||.-.+-.. .+.-....++.+++..++|+.+-+|++ .||.|..++++...+. +.+.+
T Consensus 11 ~~~e~~~~~~~~~~aD~vElR~D~~~~~~~~~~~~~~~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~ll---~~~~~ 87 (225)
T cd00502 11 LLEEALSLLELLLGADAVELRVDLLEDPSIDDVAEQLSLLRELTPLPIIFTVRTKSEGGNFEGSEEEYLELL---EEALK 87 (225)
T ss_pred CHHHHHHHHHHhcCCCEEEEEEeeccccchHHHHHHHHHHHHhCCCCEEEEEcccccCCCcCCCHHHHHHHH---HHHHH
Confidence 44444443332 89999999766332 111134567777777789999999972 3677888877665553 45556
Q ss_pred cCCCEEEEeeecCCCCcCHHHHHHHHHHh--CCCCeEEee-cccCCC
Q psy7930 94 SGADGFVIGALTGEQEIDIEFIRQLKTII--GDRPITFHR-AFDVVR 137 (146)
Q Consensus 94 ~GadG~VfG~L~~dg~iD~~~~~~Li~~a--~~~~vtFHR-AFD~~~ 137 (146)
+|+|-+-+=.-+ +...+++..+ ++.++..+- -|+.++
T Consensus 88 ~~~d~vDiEl~~-------~~~~~~~~~~~~~~~kiI~S~H~f~~tp 127 (225)
T cd00502 88 LGPDYVDIELDS-------ALLEELINSRKKGNTKIIGSYHDFSGTP 127 (225)
T ss_pred HCCCEEEEEecc-------hHHHHHHHHHHhCCCEEEEEeccCCCCc
Confidence 677766653211 4577777775 345543333 566665
No 128
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=93.36 E-value=1.1 Score=37.07 Aligned_cols=106 Identities=13% Similarity=0.188 Sum_probs=70.8
Q ss_pred ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC-CcEEEEEccCCCC----CcccCHH--H-HH-HHHH
Q psy7930 16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL-VPVFVMIRVRAGF----DFVFSQA--E-KE-IMAL 86 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~-ipv~vMIRP~R~g----dF~Ys~~--E-~~-~M~~ 86 (146)
+.|++++....+.|++++-+.+.+ .++..+++++.+..+ -.+.+-|-. |.| -.+|++. | .. ...+
T Consensus 83 i~s~~d~~~l~~~G~~~vvigs~~-----~~~~~~~~~~~~~~~~~~i~vsiD~-k~g~~~~~~v~~~gw~~~~~~~~~e 156 (258)
T PRK01033 83 IKTLEQAKKIFSLGVEKVSINTAA-----LEDPDLITEAAERFGSQSVVVSIDV-KKNLGGKFDVYTHNGTKKLKKDPLE 156 (258)
T ss_pred CCCHHHHHHHHHCCCCEEEEChHH-----hcCHHHHHHHHHHhCCCcEEEEEEE-ecCCCCcEEEEEcCCeecCCCCHHH
Confidence 458899999999999999988643 345678888877652 124445555 433 1333210 0 01 1123
Q ss_pred HHHHHHHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeE
Q psy7930 87 DCHQFVESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPIT 128 (146)
Q Consensus 87 dI~~~~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vt 128 (146)
=++.+.++|++.+++=-.+.+|+ .|.+.++++.+.. +.|++
T Consensus 157 ~~~~~~~~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~-~ipvI 200 (258)
T PRK01033 157 LAKEYEALGAGEILLNSIDRDGTMKGYDLELLKSFRNAL-KIPLI 200 (258)
T ss_pred HHHHHHHcCCCEEEEEccCCCCCcCCCCHHHHHHHHhhC-CCCEE
Confidence 35667799999999988888764 7999999988864 46654
No 129
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.35 E-value=0.5 Score=42.26 Aligned_cols=74 Identities=23% Similarity=0.322 Sum_probs=53.0
Q ss_pred EecCHHHHHHHHHcCCCEEEecCCCCCCC---------C-CCCHHHHHHHHh---hCCCcEEEEEccCCCCCcccCHHHH
Q psy7930 15 CVDSVASALAAVRGGADRLELCAALSEGG---------L-TPTLGLYRVIKR---LVLVPVFVMIRVRAGFDFVFSQAEK 81 (146)
Q Consensus 15 cv~s~~~a~~A~~~GAdRIELc~~l~~GG---------l-TPS~g~i~~~~~---~~~ipv~vMIRP~R~gdF~Ys~~E~ 81 (146)
-|.|+++++.+.+.|||-|=. .+..|+ . .|....+..+.+ ..++||.. .|++.|+
T Consensus 201 ~V~T~e~a~~l~~aGaD~I~v--G~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIA------dGGI~~~---- 268 (404)
T PRK06843 201 NIVTKEAALDLISVGADCLKV--GIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIA------DGGIRFS---- 268 (404)
T ss_pred ecCCHHHHHHHHHcCCCEEEE--CCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEE------eCCCCCH----
Confidence 478899999999999999874 333332 1 365665544444 45777632 4557776
Q ss_pred HHHHHHHHHHHHcCCCEEEEeee
Q psy7930 82 EIMALDCHQFVESGADGFVIGAL 104 (146)
Q Consensus 82 ~~M~~dI~~~~~~GadG~VfG~L 104 (146)
.||..+..+||++|++|=+
T Consensus 269 ----~Di~KALalGA~aVmvGs~ 287 (404)
T PRK06843 269 ----GDVVKAIAAGADSVMIGNL 287 (404)
T ss_pred ----HHHHHHHHcCCCEEEEcce
Confidence 7899999999999999954
No 130
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=93.35 E-value=0.36 Score=42.32 Aligned_cols=79 Identities=24% Similarity=0.209 Sum_probs=49.6
Q ss_pred eeEEEec-CHHH----HHHHHHcCCCEEEecCCCCC----CC------CCC--CHHHHHHHHhhCCCcEEEEEccCCCCC
Q psy7930 11 TLEVCVD-SVAS----ALAAVRGGADRLELCAALSE----GG------LTP--TLGLYRVIKRLVLVPVFVMIRVRAGFD 73 (146)
Q Consensus 11 ~lEvcv~-s~~~----a~~A~~~GAdRIELc~~l~~----GG------lTP--S~g~i~~~~~~~~ipv~vMIRP~R~gd 73 (146)
++-|... +.++ +..+++.|||-|||+-+-.. .| -.| ...+++.+++.+++||.|=||| ...+
T Consensus 103 i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p-~~~~ 181 (420)
T PRK08318 103 IASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTP-NITD 181 (420)
T ss_pred EEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCC-Cccc
Confidence 3444444 4443 44556779999999843221 11 233 2446677777778999999999 3221
Q ss_pred cccCHHHHHHHHHHHHHHHHcCCCEEE
Q psy7930 74 FVFSQAEKEIMALDCHQFVESGADGFV 100 (146)
Q Consensus 74 F~Ys~~E~~~M~~dI~~~~~~GadG~V 100 (146)
+ .+=.+.+.+.|+|||+
T Consensus 182 -------~---~~~a~~~~~~Gadgi~ 198 (420)
T PRK08318 182 -------I---REPARAAKRGGADAVS 198 (420)
T ss_pred -------H---HHHHHHHHHCCCCEEE
Confidence 2 2333567889999999
No 131
>PRK09989 hypothetical protein; Provisional
Probab=93.33 E-value=2.7 Score=33.89 Aligned_cols=103 Identities=10% Similarity=0.064 Sum_probs=63.0
Q ss_pred CHH-HHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCC----CCc--ccC----HHHHHHHHH
Q psy7930 18 SVA-SALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAG----FDF--VFS----QAEKEIMAL 86 (146)
Q Consensus 18 s~~-~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~----gdF--~Ys----~~E~~~M~~ 86 (146)
+++ .+..+.+.|-+-|||.. ..+.+ ..-+++..+..++.+..+=-| -+ +++ ..+ ..-++.+++
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~---~~~~~--~~~~~~~l~~~Gl~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~ 89 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLF---PYDYS--TLQIQKQLEQNHLTLALFNTA-PGDINAGEWGLSALPGREHEARADIDL 89 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECC---cccCC--HHHHHHHHHHcCCcEEEeccC-CCccCCCCCcccCCCccHHHHHHHHHH
Confidence 454 55667899999999975 34555 456777777778887766433 11 111 111 122466778
Q ss_pred HHHHHHHcCCCEEEE--eeecCCCC------cCHHHHHHHHHHhCCCC
Q psy7930 87 DCHQFVESGADGFVI--GALTGEQE------IDIEFIRQLKTIIGDRP 126 (146)
Q Consensus 87 dI~~~~~~GadG~Vf--G~L~~dg~------iD~~~~~~Li~~a~~~~ 126 (146)
-|+.++++|++-+++ |.+..... --.+.++++.+.|....
T Consensus 90 ~i~~A~~lg~~~v~v~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~g 137 (258)
T PRK09989 90 ALEYALALNCEQVHVMAGVVPAGEDAERYRAVFIDNLRYAADRFAPHG 137 (258)
T ss_pred HHHHHHHhCcCEEEECccCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888899999998864 44432211 12366777777775333
No 132
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=93.32 E-value=1.6 Score=34.67 Aligned_cols=87 Identities=25% Similarity=0.298 Sum_probs=61.5
Q ss_pred HHHHHHHHcCCCEEEecCCCCC-CCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930 20 ASALAAVRGGADRLELCAALSE-GGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG 98 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~-GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG 98 (146)
+-|..-.+.||+.+-+.+-=.. .|-.+...+++.+.+.+++|+.+ +| +.-+. +|++.+.+.||+.
T Consensus 32 ~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~~~pi~~------gg-GI~~~-------ed~~~~~~~Ga~~ 97 (230)
T TIGR00007 32 EAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRETGVPVQV------GG-GIRSL-------EDVEKLLDLGVDR 97 (230)
T ss_pred HHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhcCCCEEE------eC-CcCCH-------HHHHHHHHcCCCE
Confidence 4455556789999999763232 46567889999999988888854 33 55554 4566677799999
Q ss_pred EEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930 99 FVIGALTGEQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 99 ~VfG~L~~dg~iD~~~~~~Li~~a~ 123 (146)
+|+|...-. |.+.+.++.+..+
T Consensus 98 vvlgs~~l~---d~~~~~~~~~~~g 119 (230)
T TIGR00007 98 VIIGTAAVE---NPDLVKELLKEYG 119 (230)
T ss_pred EEEChHHhh---CHHHHHHHHHHhC
Confidence 999965433 4567777777765
No 133
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=93.31 E-value=0.93 Score=37.69 Aligned_cols=81 Identities=23% Similarity=0.264 Sum_probs=52.4
Q ss_pred ceeEEEecCHHHHHHHH----Hc--CCCEEEecCC-CCC-C-C----CCC--CHHHHHHHHhhCCCcEEEEEccCCCCCc
Q psy7930 10 TTLEVCVDSVASALAAV----RG--GADRLELCAA-LSE-G-G----LTP--TLGLYRVIKRLVLVPVFVMIRVRAGFDF 74 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~----~~--GAdRIELc~~-l~~-G-G----lTP--S~g~i~~~~~~~~ipv~vMIRP~R~gdF 74 (146)
+++-++..+.++...+. +. +||-|||+-+ ... | | -.| ...+++.+++.+++||.|=||| ..
T Consensus 93 l~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~-~~--- 168 (300)
T TIGR01037 93 LIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSP-NV--- 168 (300)
T ss_pred EEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCC-Ch---
Confidence 46777888877754433 32 4999999742 111 1 1 233 2456777777778999877777 11
Q ss_pred ccCHHHHHHHHHHHHHHHHcCCCEEEE
Q psy7930 75 VFSQAEKEIMALDCHQFVESGADGFVI 101 (146)
Q Consensus 75 ~Ys~~E~~~M~~dI~~~~~~GadG~Vf 101 (146)
+.+.+-.+.+.++|+|++++
T Consensus 169 -------~~~~~~a~~l~~~G~d~i~v 188 (300)
T TIGR01037 169 -------TDITEIAKAAEEAGADGLTL 188 (300)
T ss_pred -------hhHHHHHHHHHHcCCCEEEE
Confidence 12344456788999999997
No 134
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=93.24 E-value=1.6 Score=35.55 Aligned_cols=92 Identities=23% Similarity=0.199 Sum_probs=63.9
Q ss_pred HHHHHHHHHcCCCEEEecCCCCCCC--CCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHH-cC
Q psy7930 19 VASALAAVRGGADRLELCAALSEGG--LTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVE-SG 95 (146)
Q Consensus 19 ~~~a~~A~~~GAdRIELc~~l~~GG--lTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~-~G 95 (146)
.+-+..+.+.|++.+=+- ++...| --|.+.+++++++..++||.+ -|| .. |.+ |+..+.+ .|
T Consensus 156 ~~~~~~~~~~g~~~ii~~-~i~~~g~~~g~d~~~i~~~~~~~~ipvia-----~GG-v~-s~~-------d~~~~~~~~G 220 (253)
T PRK02083 156 VEWAKEVEELGAGEILLT-SMDRDGTKNGYDLELTRAVSDAVNVPVIA-----SGG-AG-NLE-------HFVEAFTEGG 220 (253)
T ss_pred HHHHHHHHHcCCCEEEEc-CCcCCCCCCCcCHHHHHHHHhhCCCCEEE-----ECC-CC-CHH-------HHHHHHHhCC
Confidence 455678889999998663 333222 235788999999988899754 355 22 333 4444454 69
Q ss_pred CCEEEEeeecCCCCcCHHHHHHHHHHhCCCC
Q psy7930 96 ADGFVIGALTGEQEIDIEFIRQLKTIIGDRP 126 (146)
Q Consensus 96 adG~VfG~L~~dg~iD~~~~~~Li~~a~~~~ 126 (146)
++|+++|-+--+|.++.+.+++.+.. .+.+
T Consensus 221 ~~gvivg~al~~~~~~~~~~~~~~~~-~~~~ 250 (253)
T PRK02083 221 ADAALAASIFHFGEITIGELKAYLAE-QGIP 250 (253)
T ss_pred ccEEeEhHHHHcCCCCHHHHHHHHHH-CCCc
Confidence 99999998888899999988777753 3443
No 135
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=93.15 E-value=1.6 Score=36.35 Aligned_cols=109 Identities=16% Similarity=0.038 Sum_probs=70.5
Q ss_pred EEecCHHHHHHHHHcCCCEEEecCCCCC------CCCCCC--HHHHHHHHhh---CCCcEEEEEccCCCCCcccCHHHHH
Q psy7930 14 VCVDSVASALAAVRGGADRLELCAALSE------GGLTPT--LGLYRVIKRL---VLVPVFVMIRVRAGFDFVFSQAEKE 82 (146)
Q Consensus 14 vcv~s~~~a~~A~~~GAdRIELc~~l~~------GGlTPS--~g~i~~~~~~---~~ipv~vMIRP~R~gdF~Ys~~E~~ 82 (146)
.+..+.+++..|.+.|++.|.++-..+. =|.|+. ...+..+.+. .++.|.+- + ...|.++.+++.
T Consensus 69 ~~r~~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~--~--eda~r~~~~~l~ 144 (262)
T cd07948 69 HIRCHMDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFS--S--EDSFRSDLVDLL 144 (262)
T ss_pred EecCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE--E--EeeCCCCHHHHH
Confidence 4577999999999999999999864331 244442 2223222222 24444444 3 234666655544
Q ss_pred HHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC---CCCeEEee
Q psy7930 83 IMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG---DRPITFHR 131 (146)
Q Consensus 83 ~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~---~~~vtFHR 131 (146)
+-++.+.++|++.|.+ -+.-|....+.+.++++..+ +.++.||-
T Consensus 145 ---~~~~~~~~~g~~~i~l--~Dt~G~~~P~~v~~~~~~~~~~~~~~i~~H~ 191 (262)
T cd07948 145 ---RVYRAVDKLGVNRVGI--ADTVGIATPRQVYELVRTLRGVVSCDIEFHG 191 (262)
T ss_pred ---HHHHHHHHcCCCEEEE--CCcCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 5566677889997654 36678888888888887765 47777774
No 136
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=93.12 E-value=1.1 Score=36.80 Aligned_cols=100 Identities=17% Similarity=0.156 Sum_probs=71.6
Q ss_pred ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHH---HHHHHHHHH
Q psy7930 16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKE---IMALDCHQF 91 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~---~M~~dI~~~ 91 (146)
+-|.+++..+.+.||+|+=+.+.. --++.+++++.+.. +-.|.+=|=. |.+.+++++.-.+ ...+=++.+
T Consensus 82 Irs~e~~~~~l~~Ga~kvvigt~a-----~~~p~~~~~~~~~~g~~~ivvslD~-~~~~~v~~~gw~~~~~~~~e~~~~l 155 (232)
T PRK13586 82 IRDIEKAKRLLSLDVNALVFSTIV-----FTNFNLFHDIVREIGSNRVLVSIDY-DNTKRVLIRGWKEKSMEVIDGIKKV 155 (232)
T ss_pred cCCHHHHHHHHHCCCCEEEECchh-----hCCHHHHHHHHHHhCCCCEEEEEEc-CCCCEEEccCCeeCCCCHHHHHHHH
Confidence 478899999999999999776532 13668999888776 3456555655 3233565432111 233557788
Q ss_pred HHcCCCEEEEeeecCCCC---cCHHHHHHHHHH
Q psy7930 92 VESGADGFVIGALTGEQE---IDIEFIRQLKTI 121 (146)
Q Consensus 92 ~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~ 121 (146)
.++|+.+|++=-++.||+ +|.+.++++.+.
T Consensus 156 ~~~g~~~ii~tdI~~dGt~~G~d~el~~~~~~~ 188 (232)
T PRK13586 156 NELELLGIIFTYISNEGTTKGIDYNVKDYARLI 188 (232)
T ss_pred HhcCCCEEEEecccccccCcCcCHHHHHHHHhC
Confidence 899999999999999986 899998888664
No 137
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=93.11 E-value=0.44 Score=39.07 Aligned_cols=70 Identities=24% Similarity=0.294 Sum_probs=46.5
Q ss_pred ecCHHHHHHHHHcCCCEEEecCCC-----CCCCCC--CCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930 16 VDSVASALAAVRGGADRLELCAAL-----SEGGLT--PTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDC 88 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~~l-----~~GGlT--PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI 88 (146)
|.|.++|..|+++||--+=-.... ..||.. +.+.+|+++++.++||| |-.. |=|.|+ +.
T Consensus 21 V~n~eQAkIAE~AGA~AVMaLervPadiR~~GGVaRMsDP~~I~eI~~aVsIPV--MAK~-RIGHfv-----------EA 86 (208)
T PF01680_consen 21 VTNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMSDPKMIKEIMDAVSIPV--MAKV-RIGHFV-----------EA 86 (208)
T ss_dssp ESSHHHHHHHHHHT-SEEEE-SS-HHHHHHTTS---S--HHHHHHHHHH-SSEE--EEEE-ETT-HH-----------HH
T ss_pred ecCHHHHHHHHHhCCeEEEEeccCCHhHHhcCCccccCCHHHHHHHHHheEece--eecc-ccceee-----------hh
Confidence 579999999999999655433322 358875 57889999999999998 6666 668886 34
Q ss_pred HHHHHcCCCEE
Q psy7930 89 HQFVESGADGF 99 (146)
Q Consensus 89 ~~~~~~GadG~ 99 (146)
+.+.++|+|=+
T Consensus 87 qiLealgVD~I 97 (208)
T PF01680_consen 87 QILEALGVDYI 97 (208)
T ss_dssp HHHHHTT-SEE
T ss_pred hhHHHhCCcee
Confidence 56778999844
No 138
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=93.08 E-value=1.1 Score=37.19 Aligned_cols=90 Identities=22% Similarity=0.283 Sum_probs=57.3
Q ss_pred HHHHHHHHcCCCEEEecCCC-----------------CCCCCCC--CHHHHHHHHhh-CCCcEEEEEccCCCCCcccCHH
Q psy7930 20 ASALAAVRGGADRLELCAAL-----------------SEGGLTP--TLGLYRVIKRL-VLVPVFVMIRVRAGFDFVFSQA 79 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l-----------------~~GGlTP--S~g~i~~~~~~-~~ipv~vMIRP~R~gdF~Ys~~ 79 (146)
+-+.+..++|||-|||-=-. -..|+|. .+.+++++++. .++|+..|.-= . -=|.|.-+
T Consensus 28 ~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~-N-pi~~~G~e 105 (256)
T TIGR00262 28 EIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYY-N-LIFRKGVE 105 (256)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEec-c-HHhhhhHH
Confidence 33566788999999997422 1467776 46678888866 78997666532 1 12444433
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930 80 EKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 80 E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~ 123 (146)
. =++.++++|+||+.|=-|.. +...++++.++
T Consensus 106 ~------f~~~~~~aGvdgviipDlp~------ee~~~~~~~~~ 137 (256)
T TIGR00262 106 E------FYAKCKEVGVDGVLVADLPL------EESGDLVEAAK 137 (256)
T ss_pred H------HHHHHHHcCCCEEEECCCCh------HHHHHHHHHHH
Confidence 3 36778899999988754432 34455555554
No 139
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=93.03 E-value=1.6 Score=35.84 Aligned_cols=103 Identities=17% Similarity=0.188 Sum_probs=67.3
Q ss_pred ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930 16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG 95 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G 95 (146)
..+.+++..|.+.|.+.|-++...+.- -.....++.+++ .+..+.+-+-- .+.|+++++..+. +.+.++|
T Consensus 85 ~~~~~~i~~a~~~g~~~iri~~~~s~~--~~~~~~i~~ak~-~G~~v~~~~~~----~~~~~~~~~~~~~---~~~~~~G 154 (263)
T cd07943 85 IGTVDDLKMAADLGVDVVRVATHCTEA--DVSEQHIGAARK-LGMDVVGFLMM----SHMASPEELAEQA---KLMESYG 154 (263)
T ss_pred ccCHHHHHHHHHcCCCEEEEEechhhH--HHHHHHHHHHHH-CCCeEEEEEEe----ccCCCHHHHHHHH---HHHHHcC
Confidence 457899999999999999998654321 112223333333 24444443311 2457887766554 4567889
Q ss_pred CCEEEEeeecCCCCcCHHHHHHHHHHhC---CC-CeEEe
Q psy7930 96 ADGFVIGALTGEQEIDIEFIRQLKTIIG---DR-PITFH 130 (146)
Q Consensus 96 adG~VfG~L~~dg~iD~~~~~~Li~~a~---~~-~vtFH 130 (146)
+|.|.+ -+.-|....+.+.+|++..+ +. ++.||
T Consensus 155 ~d~i~l--~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H 191 (263)
T cd07943 155 ADCVYV--TDSAGAMLPDDVRERVRALREALDPTPVGFH 191 (263)
T ss_pred CCEEEE--cCCCCCcCHHHHHHHHHHHHHhCCCceEEEE
Confidence 997654 47778899999999988775 33 78888
No 140
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=93.03 E-value=1.1 Score=38.50 Aligned_cols=80 Identities=24% Similarity=0.249 Sum_probs=53.7
Q ss_pred HHHHHHHHHcCCCEEEecCCCCCCC-----CCCC-------------------HHHHHHHHhhCCCcEEEEEccCCCCCc
Q psy7930 19 VASALAAVRGGADRLELCAALSEGG-----LTPT-------------------LGLYRVIKRLVLVPVFVMIRVRAGFDF 74 (146)
Q Consensus 19 ~~~a~~A~~~GAdRIELc~~l~~GG-----lTPS-------------------~g~i~~~~~~~~ipv~vMIRP~R~gdF 74 (146)
.+.|..|.++|.|-|||..+ .|- |+|. ..+++.+++.++.++.|.||- ...++
T Consensus 144 ~~AA~ra~~aGfDgVeih~a--hGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl-~~~~~ 220 (343)
T cd04734 144 ADAARRCQAGGLDGVELQAA--HGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRI-SGDED 220 (343)
T ss_pred HHHHHHHHHcCCCEEEEccc--cchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEe-ehhhc
Confidence 36778899999999999973 122 1332 257888888888888888886 44444
Q ss_pred ccCHHHHHHHHHHHHHHHHcC-CCEEEE
Q psy7930 75 VFSQAEKEIMALDCHQFVESG-ADGFVI 101 (146)
Q Consensus 75 ~Ys~~E~~~M~~dI~~~~~~G-adG~Vf 101 (146)
.-...+.+.+.+=++.+.+.| +|-+.+
T Consensus 221 ~~~G~~~~e~~~~~~~l~~~G~vd~i~v 248 (343)
T cd04734 221 TEGGLSPDEALEIAARLAAEGLIDYVNV 248 (343)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCCEEEe
Confidence 322122333445577778888 898877
No 141
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=93.02 E-value=1.8 Score=36.07 Aligned_cols=93 Identities=15% Similarity=0.002 Sum_probs=57.0
Q ss_pred HHHHHHcCCCEEEecC--CCC-C-CC--CCCCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHH
Q psy7930 22 ALAAVRGGADRLELCA--ALS-E-GG--LTPTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVE 93 (146)
Q Consensus 22 a~~A~~~GAdRIELc~--~l~-~-GG--lTPS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~ 93 (146)
+....+.|.+.||.=- ... . .| ..++...++.+.+.. +.++.+|.|| +. ....|+..+.+
T Consensus 26 a~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~-----------~~~~~l~~a~~ 93 (266)
T cd07944 26 YRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDY-GN-----------DDIDLLEPASG 93 (266)
T ss_pred HHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECC-CC-----------CCHHHHHHHhc
Confidence 3445678999999852 110 0 01 112367777777654 6899999999 43 23456666777
Q ss_pred cCCCEEEEeeecCCCCcCHHHHHHHHHHhC--CCCeEEe
Q psy7930 94 SGADGFVIGALTGEQEIDIEFIRQLKTIIG--DRPITFH 130 (146)
Q Consensus 94 ~GadG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~vtFH 130 (146)
.|++.+-+.+-.. +.+.+.+.++.|+ |+.+.|.
T Consensus 94 ~gv~~iri~~~~~----~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 94 SVVDMIRVAFHKH----EFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred CCcCEEEEecccc----cHHHHHHHHHHHHHCCCeEEEE
Confidence 7777766654221 5666666666665 5555555
No 142
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=93.01 E-value=0.72 Score=37.60 Aligned_cols=67 Identities=28% Similarity=0.264 Sum_probs=47.6
Q ss_pred HHHHHHHHcCCCEEEecCCCCCC-CCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930 20 ASALAAVRGGADRLELCAALSEG-GLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG 98 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~G-GlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG 98 (146)
+-+.+|+..|+++|=|-.. .| +..-+..+++.+++.+++|+.+ ||+- -|. ++++.+.+.|||+
T Consensus 138 ~~a~aa~~~G~~~i~Le~~--sGa~~~v~~e~i~~Vk~~~~~Pv~v------GGGI-rs~-------e~a~~l~~~GAD~ 201 (205)
T TIGR01769 138 AYCLAAKYFGMKWVYLEAG--SGASYPVNPETISLVKKASGIPLIV------GGGI-RSP-------EIAYEIVLAGADA 201 (205)
T ss_pred HHHHHHHHcCCCEEEEEcC--CCCCCCCCHHHHHHHHHhhCCCEEE------eCCC-CCH-------HHHHHHHHcCCCE
Confidence 3466788899999988542 11 2225799999999999999876 2222 122 4556677889999
Q ss_pred EEEe
Q psy7930 99 FVIG 102 (146)
Q Consensus 99 ~VfG 102 (146)
+|+|
T Consensus 202 VVVG 205 (205)
T TIGR01769 202 IVTG 205 (205)
T ss_pred EEeC
Confidence 9998
No 143
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=92.99 E-value=1.8 Score=36.06 Aligned_cols=100 Identities=14% Similarity=0.060 Sum_probs=65.4
Q ss_pred CHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCC
Q psy7930 18 SVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGA 96 (146)
Q Consensus 18 s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Ga 96 (146)
+.+++..|.+.|.+.|-++.... ....+..+.+.. +.-..|.+-+ .-.|.|+++++..+ ++.+.++|+
T Consensus 84 ~~~~l~~a~~~gv~~iri~~~~~------~~~~~~~~i~~ak~~G~~v~~~~--~~a~~~~~~~~~~~---~~~~~~~g~ 152 (266)
T cd07944 84 DIDLLEPASGSVVDMIRVAFHKH------EFDEALPLIKAIKEKGYEVFFNL--MAISGYSDEELLEL---LELVNEIKP 152 (266)
T ss_pred CHHHHHHHhcCCcCEEEEecccc------cHHHHHHHHHHHHHCCCeEEEEE--EeecCCCHHHHHHH---HHHHHhCCC
Confidence 46888999999999988886433 333333333322 1122344444 22355887777655 455667899
Q ss_pred CEEEEeeecCCCCcCHHHHHHHHHHhC---C--CCeEEe
Q psy7930 97 DGFVIGALTGEQEIDIEFIRQLKTIIG---D--RPITFH 130 (146)
Q Consensus 97 dG~VfG~L~~dg~iD~~~~~~Li~~a~---~--~~vtFH 130 (146)
+.|.+ -+.-|....+.+.+++...+ + .++-||
T Consensus 153 ~~i~l--~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H 189 (266)
T cd07944 153 DVFYI--VDSFGSMYPEDIKRIISLLRSNLDKDIKLGFH 189 (266)
T ss_pred CEEEE--ecCCCCCCHHHHHHHHHHHHHhcCCCceEEEE
Confidence 98755 47778889899999988874 3 778888
No 144
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=92.98 E-value=0.19 Score=40.59 Aligned_cols=88 Identities=27% Similarity=0.209 Sum_probs=64.9
Q ss_pred cceeEEEecCHHH-------------HHHHHHcCCCEEEecCCCCCCCCCC-CHHHHHHHHhhCCCcEEEEEccCCCCCc
Q psy7930 9 KTTLEVCVDSVAS-------------ALAAVRGGADRLELCAALSEGGLTP-TLGLYRVIKRLVLVPVFVMIRVRAGFDF 74 (146)
Q Consensus 9 ~~~lEvcv~s~~~-------------a~~A~~~GAdRIELc~~l~~GGlTP-S~g~i~~~~~~~~ipv~vMIRP~R~gdF 74 (146)
++++| +.-+-++ ++.|.+.|||-|=....-. .|.|+ ....++++.+...+|=.+-|-. .||-
T Consensus 127 ~vIlE-~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~-~~~t~~~~~~~~~~~~~~~~p~~~~Vk~-sGGi- 202 (236)
T PF01791_consen 127 KVILE-PYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKP-VGATPEDVELMRKAVEAAPVPGKVGVKA-SGGI- 202 (236)
T ss_dssp EEEEE-ECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS-SCSHHHHHHHHHHHHHTHSSTTTSEEEE-ESSS-
T ss_pred EEEEE-EecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCcc-ccccHHHHHHHHHHHHhcCCCcceEEEE-eCCC-
Confidence 45778 6555544 6678899999999998755 66664 6778888888778882222223 5675
Q ss_pred ccCHHHHHHHHHHHHHHHHcCC--CEEEEe
Q psy7930 75 VFSQAEKEIMALDCHQFVESGA--DGFVIG 102 (146)
Q Consensus 75 ~Ys~~E~~~M~~dI~~~~~~Ga--dG~VfG 102 (146)
+..++....++...+.++|| -|+.+|
T Consensus 203 --~~~~~~~~l~~a~~~i~aGa~~~G~~~G 230 (236)
T PF01791_consen 203 --DAEDFLRTLEDALEFIEAGADRIGTSSG 230 (236)
T ss_dssp --SHHHHHHSHHHHHHHHHTTHSEEEEEEH
T ss_pred --ChHHHHHHHHHHHHHHHcCChhHHHHHH
Confidence 88999999999999999999 899887
No 145
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=92.98 E-value=0.53 Score=40.47 Aligned_cols=70 Identities=21% Similarity=0.323 Sum_probs=57.4
Q ss_pred ecCHHHHHHHHHcCCCEEEecCCC-----CCCCC--CCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930 16 VDSVASALAAVRGGADRLELCAAL-----SEGGL--TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDC 88 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~~l-----~~GGl--TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI 88 (146)
|.|+++|..|+++||=-+=....+ ..||. ..++..|+++++.+++||.-.+|= + | ..++
T Consensus 15 v~~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~V~iPVIGi~K~--~--~----------~~Ea 80 (283)
T cd04727 15 VTNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDAVSIPVMAKVRI--G--H----------FVEA 80 (283)
T ss_pred eCCHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHhCCCCeEEeeeh--h--H----------HHHH
Confidence 578999999999999766553332 45776 578999999999999999999986 2 2 6788
Q ss_pred HHHHHcCCCEE
Q psy7930 89 HQFVESGADGF 99 (146)
Q Consensus 89 ~~~~~~GadG~ 99 (146)
+.+.++|+|=|
T Consensus 81 ~~L~eaGvDiI 91 (283)
T cd04727 81 QILEALGVDMI 91 (283)
T ss_pred HHHHHcCCCEE
Confidence 99999999977
No 146
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=92.96 E-value=2.2 Score=35.21 Aligned_cols=106 Identities=13% Similarity=-0.015 Sum_probs=72.5
Q ss_pred ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCC-CCC--cccC-HH-H-HHHHHHHHH
Q psy7930 16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRA-GFD--FVFS-QA-E-KEIMALDCH 89 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R-~gd--F~Ys-~~-E-~~~M~~dI~ 89 (146)
+-|.+++....+.||+|+=+.+... ....+++++.+..+=.|.+-|=- + .|+ ++.. .. | -....+=++
T Consensus 83 Irs~e~~~~~l~~Ga~~vvigT~a~-----~~p~~~~~~~~~~g~~ivvslD~-k~~g~~~~v~~~Gw~~~~~~~~~~~~ 156 (243)
T TIGR01919 83 RRDDSSLRAALTGGRARVNGGTAAL-----ENPWWAAAVIRYGGDIVAVGLDV-LEDGEWHTLGNRGWSDGGGDLEVLER 156 (243)
T ss_pred CCCHHHHHHHHHcCCCEEEECchhh-----CCHHHHHHHHHHccccEEEEEEE-ecCCceEEEECCCeecCCCcHHHHHH
Confidence 5689999999999999997765322 26678888877653234555544 3 442 2211 11 1 112334577
Q ss_pred HHHHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeE
Q psy7930 90 QFVESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPIT 128 (146)
Q Consensus 90 ~~~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vt 128 (146)
.+.+.|+..|++=-++.||+ +|.+.++++.+.. +.|+.
T Consensus 157 ~~~~~g~~~ii~tdI~~dGt~~G~d~~l~~~l~~~~-~~pvi 197 (243)
T TIGR01919 157 LLDSGGCSRVVVTDSKKDGLSGGPNELLLEVVAART-DAIVA 197 (243)
T ss_pred HHHhCCCCEEEEEecCCcccCCCcCHHHHHHHHhhC-CCCEE
Confidence 88899999999999999986 8999999998875 44543
No 147
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=92.86 E-value=1.6 Score=35.78 Aligned_cols=99 Identities=24% Similarity=0.302 Sum_probs=68.7
Q ss_pred ccceeEEEecCHHHHHHHHHcCCCEEEecC----CCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHH
Q psy7930 8 NKTTLEVCVDSVASALAAVRGGADRLELCA----ALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEI 83 (146)
Q Consensus 8 ~~~~lEvcv~s~~~a~~A~~~GAdRIELc~----~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~ 83 (146)
.+.++=+-+.|.+++..|++.|||-|=+=. .-..+.-......++.+++..++|++++ || +
T Consensus 103 ~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAI-----GG----------i 167 (211)
T COG0352 103 PGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAI-----GG----------I 167 (211)
T ss_pred CCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEE-----cC----------C
Confidence 445788889999999999999999997754 2223443335778888888888998887 44 1
Q ss_pred HHHHHHHHHHcCCCEEEE-eeecCCCCcCHHHHHHHHHHh
Q psy7930 84 MALDCHQFVESGADGFVI-GALTGEQEIDIEFIRQLKTII 122 (146)
Q Consensus 84 M~~dI~~~~~~GadG~Vf-G~L~~dg~iD~~~~~~Li~~a 122 (146)
-.+.+..+.+.|++||.+ =+++.. .=...+.++|.+..
T Consensus 168 ~~~nv~~v~~~Ga~gVAvvsai~~a-~d~~~a~~~~~~~~ 206 (211)
T COG0352 168 NLENVPEVLEAGADGVAVVSAITSA-ADPAAAAKALRNAL 206 (211)
T ss_pred CHHHHHHHHHhCCCeEEehhHhhcC-CCHHHHHHHHHHHH
Confidence 237788999999999854 334432 22344555555544
No 148
>PRK06852 aldolase; Validated
Probab=92.77 E-value=0.86 Score=39.37 Aligned_cols=73 Identities=23% Similarity=0.123 Sum_probs=50.6
Q ss_pred HHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEE
Q psy7930 21 SALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGF 99 (146)
Q Consensus 21 ~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~ 99 (146)
-++.|.+.|||-|-..=--..|+ -+...++++.+.+ .+||.+ .||.=. ++.|+-.|.++.- +..|+.|+
T Consensus 193 aaRiaaELGADIVKv~y~~~~~~--g~~e~f~~vv~~~g~vpVvi-----aGG~k~-~~~e~L~~v~~ai--~~aGa~Gv 262 (304)
T PRK06852 193 AAGVAACLGADFVKVNYPKKEGA--NPAELFKEAVLAAGRTKVVC-----AGGSST-DPEEFLKQLYEQI--HISGASGN 262 (304)
T ss_pred HHHHHHHHcCCEEEecCCCcCCC--CCHHHHHHHHHhCCCCcEEE-----eCCCCC-CHHHHHHHHHHHH--HHcCCcee
Confidence 46889999999998763212222 2457788888877 677654 577667 7777766655543 33899999
Q ss_pred EEee
Q psy7930 100 VIGA 103 (146)
Q Consensus 100 VfG~ 103 (146)
++|=
T Consensus 263 ~~GR 266 (304)
T PRK06852 263 ATGR 266 (304)
T ss_pred eech
Confidence 9994
No 149
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=92.72 E-value=2.4 Score=33.65 Aligned_cols=89 Identities=24% Similarity=0.262 Sum_probs=60.4
Q ss_pred cCHHH-HHHHHHcCCCEEEecCC-CCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930 17 DSVAS-ALAAVRGGADRLELCAA-LSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES 94 (146)
Q Consensus 17 ~s~~~-a~~A~~~GAdRIELc~~-l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~ 94 (146)
.++.+ +..-.+.|++.+.+.+- -...|--|...+++++++.+++||.+ +| +.=|. +|++.+.+.
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~~~pv~~------~G-GI~~~-------ed~~~~~~~ 95 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKAVDIPVQV------GG-GIRSL-------ETVEALLDA 95 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHHCCCCEEE------cC-CcCCH-------HHHHHHHHc
Confidence 45555 44445679999999872 11124458899999999988888754 33 33333 456677778
Q ss_pred CCCEEEEeeecCCCCcCHHHHHHHHHHh
Q psy7930 95 GADGFVIGALTGEQEIDIEFIRQLKTII 122 (146)
Q Consensus 95 GadG~VfG~L~~dg~iD~~~~~~Li~~a 122 (146)
||+++++|.-.-+ |.+.++++.+..
T Consensus 96 Ga~~vilg~~~l~---~~~~l~ei~~~~ 120 (233)
T PRK00748 96 GVSRVIIGTAAVK---NPELVKEACKKF 120 (233)
T ss_pred CCCEEEECchHHh---CHHHHHHHHHHh
Confidence 9999999986644 345667776664
No 150
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=92.69 E-value=2.1 Score=34.92 Aligned_cols=104 Identities=16% Similarity=0.159 Sum_probs=68.8
Q ss_pred ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCC-----CcccCHHHHHHHHHHHHH
Q psy7930 16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGF-----DFVFSQAEKEIMALDCHQ 90 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~g-----dF~Ys~~E~~~M~~dI~~ 90 (146)
+.|++++..+...||+|+=+-+.+- -...+++++.+...=.+.+-|-- |.+ +|.-+ .....+=++.
T Consensus 84 irs~edv~~~l~~Ga~kvviGs~~l-----~~p~l~~~i~~~~~~~i~vsld~-~~~~v~~~Gw~~~---~~~~~~~~~~ 154 (241)
T PRK14024 84 IRDDESLEAALATGCARVNIGTAAL-----ENPEWCARVIAEHGDRVAVGLDV-RGHTLAARGWTRD---GGDLWEVLER 154 (241)
T ss_pred CCCHHHHHHHHHCCCCEEEECchHh-----CCHHHHHHHHHHhhhhEEEEEEE-eccEeccCCeeec---CccHHHHHHH
Confidence 5789999999999999987665432 25677777765542112221111 111 23311 1233455677
Q ss_pred HHHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeEE
Q psy7930 91 FVESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPITF 129 (146)
Q Consensus 91 ~~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vtF 129 (146)
+.+.|++.+++=-.+.+|. .|.+.++++.+.. ++|+.-
T Consensus 155 l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~-~ipvia 195 (241)
T PRK14024 155 LDSAGCSRYVVTDVTKDGTLTGPNLELLREVCART-DAPVVA 195 (241)
T ss_pred HHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhhC-CCCEEE
Confidence 8899999999999988864 7999999998875 566654
No 151
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=92.68 E-value=4.7 Score=34.65 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=76.5
Q ss_pred ceeEEEecCHHHHHH----HHHcCCCEEEecCCC-----CCCC------CCC--CHHHHHHHHhhCCCcEEEEEccCCCC
Q psy7930 10 TTLEVCVDSVASALA----AVRGGADRLELCAAL-----SEGG------LTP--TLGLYRVIKRLVLVPVFVMIRVRAGF 72 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~----A~~~GAdRIELc~~l-----~~GG------lTP--S~g~i~~~~~~~~ipv~vMIRP~R~g 72 (146)
+.+-++..++++... +++.|+|-|+|+-+- .-+| -.| -..+++.+++.+++||.|=||+ -.-
T Consensus 57 ~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~-g~~ 135 (318)
T TIGR00742 57 VALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRI-GID 135 (318)
T ss_pred EEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEec-CCC
Confidence 578888888877544 445799999998642 1111 122 2456777777789999999998 221
Q ss_pred CcccCHHHHHHHHHHHHHHHHcCCCEEEEeeecC--C----------CCcCHHHHHHHHHHhCCCCeEE
Q psy7930 73 DFVFSQAEKEIMALDCHQFVESGADGFVIGALTG--E----------QEIDIEFIRQLKTIIGDRPITF 129 (146)
Q Consensus 73 dF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~--d----------g~iD~~~~~~Li~~a~~~~vtF 129 (146)
..++.+...+=++.+.+.|++.+.+=.=|. + +..|.+...++.+....+|++-
T Consensus 136 ----~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~ 200 (318)
T TIGR00742 136 ----PLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEI 200 (318)
T ss_pred ----CcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEE
Confidence 123344455667788899999987765542 1 1248888888888775677653
No 152
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=92.66 E-value=2 Score=36.98 Aligned_cols=108 Identities=15% Similarity=0.170 Sum_probs=65.8
Q ss_pred HHHHHHHHcCCCEEEecCC--------C---------CCCCCCC------CHHHHHHHHhhCC----CcEEEEEccCCCC
Q psy7930 20 ASALAAVRGGADRLELCAA--------L---------SEGGLTP------TLGLYRVIKRLVL----VPVFVMIRVRAGF 72 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~--------l---------~~GGlTP------S~g~i~~~~~~~~----ipv~vMIRP~R~g 72 (146)
+.|..|+++|+|-|||..+ | .-||- . ...+++.+++.++ .++.|.+|= -+.
T Consensus 148 ~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGs-lenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~-s~~ 225 (353)
T cd04735 148 EATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGS-LENRMRFPLAVVKAVQEVIDKHADKDFILGYRF-SPE 225 (353)
T ss_pred HHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCc-HHHHHHHHHHHHHHHHHHhccccCCCceEEEEE-Ccc
Confidence 6788999999999999742 1 11442 2 2357888888876 677888886 444
Q ss_pred CcccCHHHHHHHHHHHHHHHHcCCCEEEEeee--cCC----CCcCHHHHHHHHHHhC-CCCeEE
Q psy7930 73 DFVFSQAEKEIMALDCHQFVESGADGFVIGAL--TGE----QEIDIEFIRQLKTIIG-DRPITF 129 (146)
Q Consensus 73 dF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L--~~d----g~iD~~~~~~Li~~a~-~~~vtF 129 (146)
+|.......+.+.+=++.+.+.|+|-+-++.= +.. ...+.+..+.+.+..+ ++|+.-
T Consensus 226 ~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~ 289 (353)
T cd04735 226 EPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIA 289 (353)
T ss_pred cccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEE
Confidence 44333223344556667788899998877542 221 1113444455555443 456553
No 153
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=92.63 E-value=1.7 Score=39.31 Aligned_cols=102 Identities=17% Similarity=0.059 Sum_probs=68.2
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEE
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGF 99 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~ 99 (146)
+++..|.++|.|.+-++..+..--- ....++.++ ..+..+.+.|.. -.+.+ |+.+-+.. -++.+.++|+|.|
T Consensus 100 ~~v~~A~~~Gvd~irif~~lnd~~n--~~~~v~~ak-~~G~~v~~~i~~-t~~p~-~~~~~~~~---~a~~l~~~Gad~I 171 (448)
T PRK12331 100 SFVQKSVENGIDIIRIFDALNDVRN--LETAVKATK-KAGGHAQVAISY-TTSPV-HTIDYFVK---LAKEMQEMGADSI 171 (448)
T ss_pred HHHHHHHHCCCCEEEEEEecCcHHH--HHHHHHHHH-HcCCeEEEEEEe-ecCCC-CCHHHHHH---HHHHHHHcCCCEE
Confidence 5668899999999999976644210 111233332 246677777776 44443 55555544 4555678899976
Q ss_pred EEeeecCCCCcCHHHHHHHHHHhC---CCCeEEee
Q psy7930 100 VIGALTGEQEIDIEFIRQLKTIIG---DRPITFHR 131 (146)
Q Consensus 100 VfG~L~~dg~iD~~~~~~Li~~a~---~~~vtFHR 131 (146)
.+ -+.-|......+.+|+++.+ ++++-||-
T Consensus 172 ~i--~Dt~G~l~P~~v~~lv~alk~~~~~pi~~H~ 204 (448)
T PRK12331 172 CI--KDMAGILTPYVAYELVKRIKEAVTVPLEVHT 204 (448)
T ss_pred EE--cCCCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 55 37778888889999988875 57788884
No 154
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=92.61 E-value=0.73 Score=40.33 Aligned_cols=73 Identities=22% Similarity=0.236 Sum_probs=52.4
Q ss_pred cCHHHHHHHHHcCCCEEEecCC--CCCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHH
Q psy7930 17 DSVASALAAVRGGADRLELCAA--LSEGGLTPTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFV 92 (146)
Q Consensus 17 ~s~~~a~~A~~~GAdRIELc~~--l~~GGlTPS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~ 92 (146)
.+.+++..|++.|+|=|=+..+ -...|..++...+.++++.+ ++||.+ .|++... .||..+.
T Consensus 230 ~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~------dGGIr~g--------~Di~kaL 295 (351)
T cd04737 230 QSPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIF------DSGVRRG--------EHVFKAL 295 (351)
T ss_pred CCHHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEE------ECCCCCH--------HHHHHHH
Confidence 6899999999999999999753 12222334567888887776 477654 2334433 6788888
Q ss_pred HcCCCEEEEee
Q psy7930 93 ESGADGFVIGA 103 (146)
Q Consensus 93 ~~GadG~VfG~ 103 (146)
.+|||+|-+|=
T Consensus 296 alGA~~V~iGr 306 (351)
T cd04737 296 ASGADAVAVGR 306 (351)
T ss_pred HcCCCEEEECH
Confidence 89999999983
No 155
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=92.61 E-value=0.79 Score=40.68 Aligned_cols=76 Identities=20% Similarity=0.168 Sum_probs=56.2
Q ss_pred eeEEEecCHHHHHHHHHcCCCEEEecCC--CCCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930 11 TLEVCVDSVASALAAVRGGADRLELCAA--LSEGGLTPTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMAL 86 (146)
Q Consensus 11 ~lEvcv~s~~~a~~A~~~GAdRIELc~~--l~~GGlTPS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~ 86 (146)
+++| -|.++|..|.+.|+|-|=+-.+ =...+.-|+...+.++++.+ ++||.+ .|++.+. .
T Consensus 258 vKgV--~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~------dGGIr~G--------~ 321 (383)
T cd03332 258 LKGI--LHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLF------DSGVRTG--------A 321 (383)
T ss_pred EecC--CCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEE------eCCcCcH--------H
Confidence 3444 7899999999999999887642 11223456788888888766 477643 3446655 6
Q ss_pred HHHHHHHcCCCEEEEe
Q psy7930 87 DCHQFVESGADGFVIG 102 (146)
Q Consensus 87 dI~~~~~~GadG~VfG 102 (146)
||..+..+|||++-+|
T Consensus 322 Dv~KALaLGA~~v~iG 337 (383)
T cd03332 322 DIMKALALGAKAVLIG 337 (383)
T ss_pred HHHHHHHcCCCEEEEc
Confidence 8999999999999998
No 156
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=92.60 E-value=0.94 Score=37.18 Aligned_cols=67 Identities=22% Similarity=0.229 Sum_probs=49.0
Q ss_pred HHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEE
Q psy7930 22 ALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVI 101 (146)
Q Consensus 22 a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~Vf 101 (146)
+..|.+.|||-|-.- ..++...++++.+...+||.+ | ||-=. +..+...+.+..+.++|++|+.+
T Consensus 162 ~~~a~~~GADyikt~-------~~~~~~~l~~~~~~~~iPVva-~----GGi~~---~~~~~~~~~i~~~~~aGa~Gia~ 226 (258)
T TIGR01949 162 ARLGAELGADIVKTP-------YTGDIDSFRDVVKGCPAPVVV-A----GGPKT---NSDREFLQMIKDAMEAGAAGVAV 226 (258)
T ss_pred HHHHHHHCCCEEecc-------CCCCHHHHHHHHHhCCCcEEE-e----cCCCC---CCHHHHHHHHHHHHHcCCcEEeh
Confidence 578889999999862 235788999999888999944 3 44211 12345567777888999999999
Q ss_pred ee
Q psy7930 102 GA 103 (146)
Q Consensus 102 G~ 103 (146)
|-
T Consensus 227 g~ 228 (258)
T TIGR01949 227 GR 228 (258)
T ss_pred hh
Confidence 94
No 157
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=92.56 E-value=1.1 Score=37.72 Aligned_cols=77 Identities=16% Similarity=0.251 Sum_probs=52.8
Q ss_pred HHHHHHHHcCCCEEEecC---CC--------------CCCCCCC--CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHH
Q psy7930 20 ASALAAVRGGADRLELCA---AL--------------SEGGLTP--TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAE 80 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~---~l--------------~~GGlTP--S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E 80 (146)
+-+.+.+++|||-|||-= +. -..|+|. .+.+++++++..++|+.+|--= .-=|.|.-+.
T Consensus 33 ~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~--N~i~~~G~e~ 110 (263)
T CHL00200 33 KALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYY--NPVLHYGINK 110 (263)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecc--cHHHHhCHHH
Confidence 345667889999999962 21 1456665 3678888887789998888642 1125555444
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeee
Q psy7930 81 KEIMALDCHQFVESGADGFVIGAL 104 (146)
Q Consensus 81 ~~~M~~dI~~~~~~GadG~VfG~L 104 (146)
+ ++.++++|+||+.+=-|
T Consensus 111 F------~~~~~~aGvdgviipDL 128 (263)
T CHL00200 111 F------IKKISQAGVKGLIIPDL 128 (263)
T ss_pred H------HHHHHHcCCeEEEecCC
Confidence 3 67889999999887544
No 158
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=92.43 E-value=0.87 Score=38.89 Aligned_cols=70 Identities=21% Similarity=0.248 Sum_probs=48.6
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCC--CCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGL--TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD 97 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGl--TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad 97 (146)
+=+..+++.|++-|.+-..-..+.. ++....++++++.+++||.. -|| +.|.++.+.|.+ ..|+|
T Consensus 153 ~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~-----nGg--I~s~~da~~~l~------~~gad 219 (321)
T PRK10415 153 EIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIA-----NGD--ITDPLKARAVLD------YTGAD 219 (321)
T ss_pred HHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEE-----eCC--CCCHHHHHHHHh------ccCCC
Confidence 4455688999999988654333322 46788999999999999754 355 345555554432 36999
Q ss_pred EEEEe
Q psy7930 98 GFVIG 102 (146)
Q Consensus 98 G~VfG 102 (146)
||.+|
T Consensus 220 gVmiG 224 (321)
T PRK10415 220 ALMIG 224 (321)
T ss_pred EEEEC
Confidence 99999
No 159
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=92.40 E-value=0.19 Score=40.81 Aligned_cols=106 Identities=15% Similarity=0.198 Sum_probs=71.6
Q ss_pred ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCC-cEEEEEccCCCC-CcccCHHHH---HHHHHHHHH
Q psy7930 16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLV-PVFVMIRVRAGF-DFVFSQAEK---EIMALDCHQ 90 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~i-pv~vMIRP~R~g-dF~Ys~~E~---~~M~~dI~~ 90 (146)
+-|.+++....+.||+|+=+.+.. -.+..+++++.+..+- .|.+-|-- |.| ....+.... -...+-++.
T Consensus 82 Irs~ed~~~ll~~Ga~~Vvigt~~-----~~~~~~l~~~~~~~g~~~ivvslD~-~~g~~v~~~gw~~~~~~~~~~~~~~ 155 (229)
T PF00977_consen 82 IRSIEDAERLLDAGADRVVIGTEA-----LEDPELLEELAERYGSQRIVVSLDA-RDGYKVATNGWQESSGIDLEEFAKR 155 (229)
T ss_dssp E-SHHHHHHHHHTT-SEEEESHHH-----HHCCHHHHHHHHHHGGGGEEEEEEE-EETEEEEETTTTEEEEEEHHHHHHH
T ss_pred cCcHHHHHHHHHhCCCEEEeChHH-----hhchhHHHHHHHHcCcccEEEEEEe-eeceEEEecCccccCCcCHHHHHHH
Confidence 468999999999999999998741 2345678887776543 56666666 444 122111111 124455778
Q ss_pred HHHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeE
Q psy7930 91 FVESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPIT 128 (146)
Q Consensus 91 ~~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vt 128 (146)
+.+.|+..|++=-++.||+ +|.+.++++.+.. +.|++
T Consensus 156 ~~~~g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~-~~~vi 195 (229)
T PF00977_consen 156 LEELGAGEIILTDIDRDGTMQGPDLELLKQLAEAV-NIPVI 195 (229)
T ss_dssp HHHTT-SEEEEEETTTTTTSSS--HHHHHHHHHHH-SSEEE
T ss_pred HHhcCCcEEEEeeccccCCcCCCCHHHHHHHHHHc-CCCEE
Confidence 8999999999999999985 8999999999888 66654
No 160
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=92.34 E-value=0.84 Score=39.21 Aligned_cols=82 Identities=20% Similarity=0.204 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCCEEEecCC-----------C------CCCCC-----CCCHHHHHHHHhhCCCcEEEEEccCCCCCccc
Q psy7930 19 VASALAAVRGGADRLELCAA-----------L------SEGGL-----TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVF 76 (146)
Q Consensus 19 ~~~a~~A~~~GAdRIELc~~-----------l------~~GGl-----TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Y 76 (146)
.+.|..|.++|.|-|||..+ . .-||. --....++.+++.++.++.|.||- ..-|+..
T Consensus 140 ~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi-~~~D~~~ 218 (353)
T cd02930 140 ARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRL-SMLDLVE 218 (353)
T ss_pred HHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEe-cccccCC
Confidence 36778899999999999762 0 11331 112367888888887777788887 5445543
Q ss_pred CHHHHHHHHHHHHHHHHcCCCEEEE
Q psy7930 77 SQAEKEIMALDCHQFVESGADGFVI 101 (146)
Q Consensus 77 s~~E~~~M~~dI~~~~~~GadG~Vf 101 (146)
...+.+.+.+=++.+.++|+|-+-+
T Consensus 219 ~g~~~~e~~~i~~~Le~~G~d~i~v 243 (353)
T cd02930 219 GGSTWEEVVALAKALEAAGADILNT 243 (353)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 2233444555566777889998877
No 161
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=92.27 E-value=0.24 Score=42.69 Aligned_cols=70 Identities=21% Similarity=0.259 Sum_probs=57.2
Q ss_pred ecCHHHHHHHHHcCCCEEEecCC-----CCCCCC--CCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930 16 VDSVASALAAVRGGADRLELCAA-----LSEGGL--TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDC 88 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~~-----l~~GGl--TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI 88 (146)
|.|++.|..|++.|++-|=|+-. -..||. .-++..++++++.+++||.+.+|- +. ..++
T Consensus 24 v~~~~~a~iae~~g~~~v~~~~~~psd~~~~gg~~Rm~~p~~I~aIk~~V~iPVigk~Ri--gh------------~~Ea 89 (293)
T PRK04180 24 VVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIEEIMDAVSIPVMAKARI--GH------------FVEA 89 (293)
T ss_pred eCCHHHHHHHHHhChHHHHHccCCCchHhhcCCeeecCCHHHHHHHHHhCCCCeEEeehh--hH------------HHHH
Confidence 56899999999999998877532 245664 568899999999999999998886 22 5788
Q ss_pred HHHHHcCCCEE
Q psy7930 89 HQFVESGADGF 99 (146)
Q Consensus 89 ~~~~~~GadG~ 99 (146)
+.+.++|+|=|
T Consensus 90 ~~L~~~GvDiI 100 (293)
T PRK04180 90 QILEALGVDYI 100 (293)
T ss_pred HHHHHcCCCEE
Confidence 88999999977
No 162
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=92.27 E-value=0.71 Score=40.64 Aligned_cols=95 Identities=21% Similarity=0.352 Sum_probs=56.9
Q ss_pred HHHHHHHHHcCCCEEEecCCCCCCCC-CCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930 19 VASALAAVRGGADRLELCAALSEGGL-TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD 97 (146)
Q Consensus 19 ~~~a~~A~~~GAdRIELc~~l~~GGl-TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad 97 (146)
.+.+..|.+.|+|.|-+.......-. ......++++++..++||.+. ||= +. +.+..+.+.|++
T Consensus 121 ~e~~~~a~~~GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~~~iPI~a~-----GGI---~~-------~n~~~~l~aGAd 185 (430)
T PRK07028 121 VKRAVELEELGVDYINVHVGIDQQMLGKDPLELLKEVSEEVSIPIAVA-----GGL---DA-------ETAAKAVAAGAD 185 (430)
T ss_pred HHHHHHHHhcCCCEEEEEeccchhhcCCChHHHHHHHHhhCCCcEEEE-----CCC---CH-------HHHHHHHHcCCC
Confidence 56678889999999966532110000 112468888888778888663 331 22 557888999999
Q ss_pred EEEEee-ecCCCCcCHHHHHHHHHHhC-CCCeEE
Q psy7930 98 GFVIGA-LTGEQEIDIEFIRQLKTIIG-DRPITF 129 (146)
Q Consensus 98 G~VfG~-L~~dg~iD~~~~~~Li~~a~-~~~vtF 129 (146)
||++|= +...... .+..+++.+..+ .++.-.
T Consensus 186 gv~vGsaI~~~~d~-~~~~~~l~~~i~~~~~~~~ 218 (430)
T PRK07028 186 IVIVGGNIIKSADV-TEAARKIREAIDSGKPVKI 218 (430)
T ss_pred EEEEChHHcCCCCH-HHHHHHHHHHHhccCCccc
Confidence 999983 3332211 344555555444 344333
No 163
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=92.21 E-value=1.3 Score=36.63 Aligned_cols=87 Identities=22% Similarity=0.186 Sum_probs=55.5
Q ss_pred HHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEE
Q psy7930 22 ALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVI 101 (146)
Q Consensus 22 a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~Vf 101 (146)
+..|.+.|||-|-.- .+++...++++.+...+||.+. ||-=.-|.+++ .+.+..+.++||+|+.+
T Consensus 166 ~~~a~e~GAD~vKt~-------~~~~~~~l~~~~~~~~ipV~a~-----GGi~~~~~~~~---l~~v~~~~~aGA~Gis~ 230 (267)
T PRK07226 166 ARVAAELGADIVKTN-------YTGDPESFREVVEGCPVPVVIA-----GGPKTDTDREF---LEMVRDAMEAGAAGVAV 230 (267)
T ss_pred HHHHHHHCCCEEeeC-------CCCCHHHHHHHHHhCCCCEEEE-----eCCCCCCHHHH---HHHHHHHHHcCCcEEeh
Confidence 688889999999664 2346788999888778998543 44222233444 45566668899999999
Q ss_pred eeecCCCCcCHHHHHHHHHHhC
Q psy7930 102 GALTGEQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 102 G~L~~dg~iD~~~~~~Li~~a~ 123 (146)
|---=...=-...++.|....+
T Consensus 231 gr~i~~~~~p~~~~~~l~~~v~ 252 (267)
T PRK07226 231 GRNVFQHEDPEAITRAISAVVH 252 (267)
T ss_pred hhhhhcCCCHHHHHHHHHHHHh
Confidence 8532221113445555555443
No 164
>PRK04302 triosephosphate isomerase; Provisional
Probab=92.19 E-value=0.72 Score=37.07 Aligned_cols=73 Identities=14% Similarity=0.053 Sum_probs=48.3
Q ss_pred CCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHh
Q psy7930 43 GLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTII 122 (146)
Q Consensus 43 GlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a 122 (146)
++.|++..++.+++.+++|+..+=-. ....=.|+.+.. ++.++++|+||+.+|--. .....+.+.++++.|
T Consensus 40 ~~~p~~~~l~~v~~~~~i~v~aq~~~-~~~~G~~tg~~~------~~~l~~~G~~~vii~~se--r~~~~~e~~~~v~~a 110 (223)
T PRK04302 40 AVAPQALDIRRVAEEVDIPVYAQHVD-PVEPGSHTGHIL------PEAVKDAGAVGTLINHSE--RRLTLADIEAVVERA 110 (223)
T ss_pred EEECCHHHHHHHHHhcCCeEEeccCC-CCCCCCchhhhH------HHHHHHcCCCEEEEeccc--cccCHHHHHHHHHHH
Confidence 47799999999998888888764221 111011444433 788889999999999632 224445577777777
Q ss_pred CC
Q psy7930 123 GD 124 (146)
Q Consensus 123 ~~ 124 (146)
..
T Consensus 111 ~~ 112 (223)
T PRK04302 111 KK 112 (223)
T ss_pred HH
Confidence 63
No 165
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=92.09 E-value=2.1 Score=35.35 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=72.7
Q ss_pred ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHH----HHHHHHHH
Q psy7930 16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEI----MALDCHQF 91 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~----M~~dI~~~ 91 (146)
+-|.+++....+.||+|+=|.+.. -....+++++.+ .+-.+.+-|=- |.| -++++.-.+. ..+=++.+
T Consensus 82 Irs~e~~~~~l~~Ga~rvvigT~a-----~~~p~~l~~~~~-~~~~ivvslD~-k~g-~v~~~gw~~~~~~~~~e~~~~~ 153 (241)
T PRK14114 82 IRSLDYAEKLRKLGYRRQIVSSKV-----LEDPSFLKFLKE-IDVEPVFSLDT-RGG-KVAFKGWLAEEEIDPVSLLKRL 153 (241)
T ss_pred CCCHHHHHHHHHCCCCEEEECchh-----hCCHHHHHHHHH-hCCCEEEEEEc-cCC-EEeeCCCeecCCCCHHHHHHHH
Confidence 468899999999999999776532 246778888854 33235555555 444 2333221111 23346788
Q ss_pred HHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeE
Q psy7930 92 VESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPIT 128 (146)
Q Consensus 92 ~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vt 128 (146)
.++|+..|++=-++.||+ +|.+.++++.+.. +.|++
T Consensus 154 ~~~g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~-~~pvi 192 (241)
T PRK14114 154 KEYGLEEIVHTEIEKDGTLQEHDFSLTRKIAIEA-EVKVF 192 (241)
T ss_pred HhcCCCEEEEEeechhhcCCCcCHHHHHHHHHHC-CCCEE
Confidence 899999999999999986 8999999998875 45554
No 166
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=92.07 E-value=1 Score=39.79 Aligned_cols=105 Identities=16% Similarity=0.066 Sum_probs=64.8
Q ss_pred HHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHh------hCCCcEEEEEccCCCCCcccCHH---HHHHHHHHHHHH
Q psy7930 21 SALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKR------LVLVPVFVMIRVRAGFDFVFSQA---EKEIMALDCHQF 91 (146)
Q Consensus 21 ~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~------~~~ipv~vMIRP~R~gdF~Ys~~---E~~~M~~dI~~~ 91 (146)
++..|.+.|||=|=.--+ .|+ ......++.+.+ ..++|+.+|+-| ||+.+.=..+ +.+....-.+.+
T Consensus 151 sVedAlrLGAdAV~~tvy--~Gs-~~E~~ml~~l~~i~~ea~~~GlPlv~~~Yp-RG~~i~~~~d~~~~~d~Ia~AaRia 226 (348)
T PRK09250 151 SVEDALRLGAVAVGATIY--FGS-EESRRQIEEISEAFEEAHELGLATVLWSYL-RNSAFKKDGDYHTAADLTGQANHLA 226 (348)
T ss_pred cHHHHHHCCCCEEEEEEe--cCC-HHHHHHHHHHHHHHHHHHHhCCCEEEEecc-cCcccCCcccccccHHHHHHHHHHH
Confidence 355589999996655433 442 122333433332 348999999999 9987642211 256778889999
Q ss_pred HHcCCCEEEEeeecCCCC--------------------cCHHHHHHHHHHh--CCCCeEE
Q psy7930 92 VESGADGFVIGALTGEQE--------------------IDIEFIRQLKTII--GDRPITF 129 (146)
Q Consensus 92 ~~~GadG~VfG~L~~dg~--------------------iD~~~~~~Li~~a--~~~~vtF 129 (146)
.++|||=|=.-.-++... =..++++..++.| ++.||.|
T Consensus 227 aELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVvi 286 (348)
T PRK09250 227 ATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLIN 286 (348)
T ss_pred HHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEE
Confidence 999999665554332222 1334566667775 3667665
No 167
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=92.04 E-value=3.4 Score=32.67 Aligned_cols=85 Identities=14% Similarity=0.206 Sum_probs=53.7
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEE
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGF 99 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~ 99 (146)
+.+..+.+.|+|.|.|... ++..+++.+++ .++|+.+.+.+ . ++++.+.+.|+|+|
T Consensus 71 ~~~~~~~~~g~d~v~l~~~-------~~~~~~~~~~~-~~i~~i~~v~~---------~-------~~~~~~~~~gad~i 126 (236)
T cd04730 71 ALLEVALEEGVPVVSFSFG-------PPAEVVERLKA-AGIKVIPTVTS---------V-------EEARKAEAAGADAL 126 (236)
T ss_pred HHHHHHHhCCCCEEEEcCC-------CCHHHHHHHHH-cCCEEEEeCCC---------H-------HHHHHHHHcCCCEE
Confidence 4678888999999998432 66777777765 46777665544 2 44566777899999
Q ss_pred EEeeecCCCC------cCHHHHHHHHHHhCCCCeEE
Q psy7930 100 VIGALTGEQE------IDIEFIRQLKTIIGDRPITF 129 (146)
Q Consensus 100 VfG~L~~dg~------iD~~~~~~Li~~a~~~~vtF 129 (146)
.+......|. .+.+.++++.+.. +.|+..
T Consensus 127 ~~~~~~~~G~~~~~~~~~~~~i~~i~~~~-~~Pvi~ 161 (236)
T cd04730 127 VAQGAEAGGHRGTFDIGTFALVPEVRDAV-DIPVIA 161 (236)
T ss_pred EEeCcCCCCCCCccccCHHHHHHHHHHHh-CCCEEE
Confidence 8833333332 2345566555433 455554
No 168
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=92.02 E-value=2.6 Score=34.01 Aligned_cols=96 Identities=16% Similarity=0.110 Sum_probs=64.4
Q ss_pred ceeEEEecCHHHHHHHHHcCCCEEEecCCCC----CCCCCC-CHHHHHHHHhh-CCCcEEEEEccCCCCCcccCHHHHHH
Q psy7930 10 TTLEVCVDSVASALAAVRGGADRLELCAALS----EGGLTP-TLGLYRVIKRL-VLVPVFVMIRVRAGFDFVFSQAEKEI 83 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~----~GGlTP-S~g~i~~~~~~-~~ipv~vMIRP~R~gdF~Ys~~E~~~ 83 (146)
.++=+-+.|.+++..|.+.|||-+=|-.=.. .|..+| ....++.+.+. .++||+.+ || +
T Consensus 103 ~~iG~S~H~~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~~~~PV~Ai-----GG----------I 167 (211)
T PRK03512 103 LRLGVSTHDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERLADYPTVAI-----GG----------I 167 (211)
T ss_pred CEEEEeCCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEE-----CC----------C
Confidence 4677788999999999999999998875332 233332 44567777666 48999886 44 1
Q ss_pred HHHHHHHHHHcCCCEE-EEeeecCCCCcCHHHHHHHHHH
Q psy7930 84 MALDCHQFVESGADGF-VIGALTGEQEIDIEFIRQLKTI 121 (146)
Q Consensus 84 M~~dI~~~~~~GadG~-VfG~L~~dg~iD~~~~~~Li~~ 121 (146)
=.+++..+++.|++|| |++++-.... =.+++++|++.
T Consensus 168 ~~~ni~~l~~~Ga~GiAvisai~~~~d-~~~~~~~l~~~ 205 (211)
T PRK03512 168 SLERAPAVLATGVGSIAVVSAITQAAD-WRAATAQLLEL 205 (211)
T ss_pred CHHHHHHHHHcCCCEEEEhhHhhCCCC-HHHHHHHHHHH
Confidence 1267888889999998 4566654332 23344455553
No 169
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=92.02 E-value=1.8 Score=35.13 Aligned_cols=86 Identities=14% Similarity=0.047 Sum_probs=61.5
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEE
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGF 99 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~ 99 (146)
+-|..-.+.||+++-+.+==..-|..+...+++.+.+.+.+|+.+ ||+..= .+|++.+.+.||+-+
T Consensus 39 ~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~~~~v~v------gGGir~--------~edv~~~l~~Ga~~v 104 (233)
T cd04723 39 DVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAAWPLGLWV------DGGIRS--------LENAQEWLKRGASRV 104 (233)
T ss_pred HHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHhCCCCEEE------ecCcCC--------HHHHHHHHHcCCCeE
Confidence 445555667999999986212237889999999999988888754 444432 578899999999999
Q ss_pred EEeeecCCCCcCHHHHHHHHHHhC
Q psy7930 100 VIGALTGEQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 100 VfG~L~~dg~iD~~~~~~Li~~a~ 123 (146)
|+|-.+-+ | +.++++++.-+
T Consensus 105 iigt~~~~---~-~~~~~~~~~~~ 124 (233)
T cd04723 105 IVGTETLP---S-DDDEDRLAALG 124 (233)
T ss_pred EEcceecc---c-hHHHHHHHhcC
Confidence 99987754 2 34445444443
No 170
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=92.01 E-value=3.6 Score=35.59 Aligned_cols=86 Identities=13% Similarity=0.052 Sum_probs=50.8
Q ss_pred HHHHHHcCCCEEEecCCCCCC------CC--CCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHH
Q psy7930 22 ALAAVRGGADRLELCAALSEG------GL--TPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFV 92 (146)
Q Consensus 22 a~~A~~~GAdRIELc~~l~~G------Gl--TPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~ 92 (146)
+....+.|.+.||.--.-..| |. .|+...++.+++.. +..+.+|++| --++ .+|++.+.
T Consensus 31 ~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~p-g~~~-----------~~dl~~a~ 98 (337)
T PRK08195 31 ARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLP-GIGT-----------VDDLKMAY 98 (337)
T ss_pred HHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEecc-Cccc-----------HHHHHHHH
Confidence 445667899999994211112 32 34567777776554 5788899999 3221 25566777
Q ss_pred HcCCCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930 93 ESGADGFVIGALTGEQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 93 ~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~ 123 (146)
+.|+|.|-+..- ... .+.+.+.++.|+
T Consensus 99 ~~gvd~iri~~~--~~e--~~~~~~~i~~ak 125 (337)
T PRK08195 99 DAGVRVVRVATH--CTE--ADVSEQHIGLAR 125 (337)
T ss_pred HcCCCEEEEEEe--cch--HHHHHHHHHHHH
Confidence 777776655531 112 234566666665
No 171
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=91.93 E-value=0.92 Score=39.29 Aligned_cols=81 Identities=31% Similarity=0.345 Sum_probs=53.1
Q ss_pred HHHHHHcC-CCEEEecC-CCCCCCCCCCHH--------HHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHH
Q psy7930 22 ALAAVRGG-ADRLELCA-ALSEGGLTPTLG--------LYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQF 91 (146)
Q Consensus 22 a~~A~~~G-AdRIELc~-~l~~GGlTPS~g--------~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~ 91 (146)
+...++.| ||-+||+= ....-| -++++ +++.+++..++||.|=|-| .++.|.+=.+.+
T Consensus 115 ~~~~~~~~~ad~ielNiScPnt~g-~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P-----------~~~di~~iA~~~ 182 (310)
T COG0167 115 ARLLEEAGDADAIELNISCPNTPG-GRALGQDPELLEKLLEAVKAATKVPVFVKLAP-----------NITDIDEIAKAA 182 (310)
T ss_pred HHHHHhcCCCCEEEEEccCCCCCC-hhhhccCHHHHHHHHHHHHhcccCceEEEeCC-----------CHHHHHHHHHHH
Confidence 34456677 99999984 333222 22222 5556667779999999999 333444456788
Q ss_pred HHcCCCEEEEeeecCCCC-cCHHH
Q psy7930 92 VESGADGFVIGALTGEQE-IDIEF 114 (146)
Q Consensus 92 ~~~GadG~VfG~L~~dg~-iD~~~ 114 (146)
.+.|+||++.===+-++. +|.+.
T Consensus 183 ~~~g~Dgl~~~NT~~~~~~id~~~ 206 (310)
T COG0167 183 EEAGADGLIAINTTKSGMKIDLET 206 (310)
T ss_pred HHcCCcEEEEEeeccccccccccc
Confidence 899999999754344454 66654
No 172
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=91.89 E-value=3.3 Score=35.36 Aligned_cols=110 Identities=19% Similarity=0.241 Sum_probs=69.0
Q ss_pred eeEEEecCHHHH----HHHHHcCCCEEEecCCCC------CCC---C--CC--CHHHHHHHHhhCCCcEEEEEccCCCCC
Q psy7930 11 TLEVCVDSVASA----LAAVRGGADRLELCAALS------EGG---L--TP--TLGLYRVIKRLVLVPVFVMIRVRAGFD 73 (146)
Q Consensus 11 ~lEvcv~s~~~a----~~A~~~GAdRIELc~~l~------~GG---l--TP--S~g~i~~~~~~~~ipv~vMIRP~R~gd 73 (146)
.+-++-.|+++. ..+++.|+|-|||+-+=. .|+ + .| ...+++.+++.+++||.|-||- |
T Consensus 68 ~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~--G-- 143 (321)
T PRK10415 68 TVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRT--G-- 143 (321)
T ss_pred EEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEc--c--
Confidence 467788788774 345567999999997521 111 1 12 2345556666678999988886 2
Q ss_pred cccCHHHHHHHHHHHHHHHHcCCCEEEEeeecCC----CCcCHHHHHHHHHHhCCCCeE
Q psy7930 74 FVFSQAEKEIMALDCHQFVESGADGFVIGALTGE----QEIDIEFIRQLKTIIGDRPIT 128 (146)
Q Consensus 74 F~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~d----g~iD~~~~~~Li~~a~~~~vt 128 (146)
|.-+.. ...+=++.+.+.|+|.+.+-.-+.+ |..|.+.++++.+..+ .||.
T Consensus 144 ~~~~~~---~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~-iPVI 198 (321)
T PRK10415 144 WAPEHR---NCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVS-IPVI 198 (321)
T ss_pred ccCCcc---hHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcC-CcEE
Confidence 222221 2223344578899999987665543 5688888888877553 4543
No 173
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=91.86 E-value=0.73 Score=40.22 Aligned_cols=74 Identities=30% Similarity=0.379 Sum_probs=53.4
Q ss_pred ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCC-----CCCHHHHHHHHhhCC--CcEEEEEccCCCCCcccCHHHHH
Q psy7930 10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGL-----TPTLGLYRVIKRLVL--VPVFVMIRVRAGFDFVFSQAEKE 82 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGl-----TPS~g~i~~~~~~~~--ipv~vMIRP~R~gdF~Ys~~E~~ 82 (146)
+++|| -|.+++..|.+.|++-|=+-.+ ||+ -|+...+.++++.++ +||.+ -|| ...-
T Consensus 229 ivKgv--~~~~da~~~~~~G~~~i~vs~h---GGr~~d~~~~~~~~L~~i~~~~~~~~~i~~-----dgG-ir~g----- 292 (356)
T PF01070_consen 229 IVKGV--LSPEDAKRAVDAGVDGIDVSNH---GGRQLDWGPPTIDALPEIRAAVGDDIPIIA-----DGG-IRRG----- 292 (356)
T ss_dssp EEEEE---SHHHHHHHHHTT-SEEEEESG---TGTSSTTS-BHHHHHHHHHHHHTTSSEEEE-----ESS---SH-----
T ss_pred EEEec--ccHHHHHHHHhcCCCEEEecCC---CcccCccccccccccHHHHhhhcCCeeEEE-----eCC-CCCH-----
Confidence 46888 8999999999999999988753 665 788888888888764 66643 122 3222
Q ss_pred HHHHHHHHHHHcCCCEEEEe
Q psy7930 83 IMALDCHQFVESGADGFVIG 102 (146)
Q Consensus 83 ~M~~dI~~~~~~GadG~VfG 102 (146)
.||..+..+||+.+-+|
T Consensus 293 ---~Dv~kalaLGA~~v~ig 309 (356)
T PF01070_consen 293 ---LDVAKALALGADAVGIG 309 (356)
T ss_dssp ---HHHHHHHHTT-SEEEES
T ss_pred ---HHHHHHHHcCCCeEEEc
Confidence 68899999999999887
No 174
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=91.84 E-value=0.96 Score=38.98 Aligned_cols=70 Identities=21% Similarity=0.288 Sum_probs=55.8
Q ss_pred ecCHHHHHHHHHcCCCEEEecC----C-CCCCCCC--CCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930 16 VDSVASALAAVRGGADRLELCA----A-LSEGGLT--PTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDC 88 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~----~-l~~GGlT--PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI 88 (146)
|.|+++|..|+++||--+=-.. . -..||.. .++..|+++++.++|||.-.+|= +. ..++
T Consensus 17 v~~~eqa~iae~aga~avm~le~~p~d~r~~ggv~R~~~p~~I~~I~~~V~iPVig~~ki--gh------------~~Ea 82 (287)
T TIGR00343 17 VVNPEQAKIAEEAGAVAVMALERVPADIRASGGVARMSDPKMIKEIMDAVSIPVMAKVRI--GH------------FVEA 82 (287)
T ss_pred eCCHHHHHHHHHcCceEEEeeccCchhhHhcCCeeecCCHHHHHHHHHhCCCCEEEEeec--cH------------HHHH
Confidence 5689999999999995443221 1 1568874 58999999999999999999986 22 5788
Q ss_pred HHHHHcCCCEE
Q psy7930 89 HQFVESGADGF 99 (146)
Q Consensus 89 ~~~~~~GadG~ 99 (146)
+.+.++|+|=+
T Consensus 83 ~~L~~~GvDiI 93 (287)
T TIGR00343 83 QILEALGVDYI 93 (287)
T ss_pred HHHHHcCCCEE
Confidence 88999999977
No 175
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=91.73 E-value=2.6 Score=36.92 Aligned_cols=114 Identities=13% Similarity=0.065 Sum_probs=71.1
Q ss_pred EEEecCHHHHHHHHHcCCCEEEecCCCC------CCCCCCC--HHHHHHHHhh---CCCcEEEEEccCCCCCcccCHHHH
Q psy7930 13 EVCVDSVASALAAVRGGADRLELCAALS------EGGLTPT--LGLYRVIKRL---VLVPVFVMIRVRAGFDFVFSQAEK 81 (146)
Q Consensus 13 Evcv~s~~~a~~A~~~GAdRIELc~~l~------~GGlTPS--~g~i~~~~~~---~~ipv~vMIRP~R~gdF~Ys~~E~ 81 (146)
.+| -+.+++..|.++|+++|.+.-.-+ -=+.|+. ...++.+.++ .++.|.+-|-- -.|.-.++..+.
T Consensus 119 ~l~-~n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~-~fg~p~~~r~~~ 196 (347)
T PLN02746 119 VLT-PNLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSC-VVGCPIEGPVPP 196 (347)
T ss_pred EEc-CCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEe-eecCCccCCCCH
Confidence 444 499999999999999999883211 1234553 2222233322 35666543422 222122223456
Q ss_pred HHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC---C-CCeEEe
Q psy7930 82 EIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG---D-RPITFH 130 (146)
Q Consensus 82 ~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~---~-~~vtFH 130 (146)
+.+.+=++.+.++|+|.|.+. +--|..+...+.+|++..+ + .++.||
T Consensus 197 ~~l~~~~~~~~~~Gad~I~l~--DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H 247 (347)
T PLN02746 197 SKVAYVAKELYDMGCYEISLG--DTIGVGTPGTVVPMLEAVMAVVPVDKLAVH 247 (347)
T ss_pred HHHHHHHHHHHHcCCCEEEec--CCcCCcCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 677777888899999987664 6678888888888888774 2 356666
No 176
>KOG0538|consensus
Probab=91.72 E-value=1.1 Score=39.41 Aligned_cols=84 Identities=20% Similarity=0.179 Sum_probs=60.4
Q ss_pred EecCHHHHHHHHHcCCCEEEecCC--CCCCCCCCCHHHHHHHHhhCCCcEEEEEc--cCCCCCcccCHHHHHHHHHHHHH
Q psy7930 15 CVDSVASALAAVRGGADRLELCAA--LSEGGLTPTLGLYRVIKRLVLVPVFVMIR--VRAGFDFVFSQAEKEIMALDCHQ 90 (146)
Q Consensus 15 cv~s~~~a~~A~~~GAdRIELc~~--l~~GGlTPS~g~i~~~~~~~~ipv~vMIR--P~R~gdF~Ys~~E~~~M~~dI~~ 90 (146)
=+-+.+||+.|++.|++-|=+-.+ =.+.+.-.|...+.++.+.++-.|-|++- - |-| .||..
T Consensus 230 Gilt~eDA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGV-R~G-------------~DVlK 295 (363)
T KOG0538|consen 230 GVLTGEDARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGV-RRG-------------TDVLK 295 (363)
T ss_pred eecccHHHHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEecCc-ccc-------------hHHHH
Confidence 455789999999999999977653 34556667899999999988533444442 3 344 68999
Q ss_pred HHHcCCCEEEEe-----eecCCCCcCH
Q psy7930 91 FVESGADGFVIG-----ALTGEQEIDI 112 (146)
Q Consensus 91 ~~~~GadG~VfG-----~L~~dg~iD~ 112 (146)
+..+||.||-+| -|--+|+=-+
T Consensus 296 ALALGAk~VfiGRP~v~gLA~~Ge~GV 322 (363)
T KOG0538|consen 296 ALALGAKGVFIGRPIVWGLAAKGEAGV 322 (363)
T ss_pred HHhcccceEEecCchheeeccccchhH
Confidence 999999999877 2444554333
No 177
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=91.70 E-value=1.1 Score=39.62 Aligned_cols=77 Identities=17% Similarity=0.140 Sum_probs=53.8
Q ss_pred eeEEEecCHHHHHHHHHcCCCEEEecCCC--CCCCCCCCHHHHHHHHhhCC--CcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930 11 TLEVCVDSVASALAAVRGGADRLELCAAL--SEGGLTPTLGLYRVIKRLVL--VPVFVMIRVRAGFDFVFSQAEKEIMAL 86 (146)
Q Consensus 11 ~lEvcv~s~~~a~~A~~~GAdRIELc~~l--~~GGlTPS~g~i~~~~~~~~--ipv~vMIRP~R~gdF~Ys~~E~~~M~~ 86 (146)
+++ +.+.+++..|++.|++-|-+..+= ...+..++...+.++++.++ +||.+ .|+..+. .
T Consensus 233 vKG--v~~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~------dGGIr~g--------~ 296 (367)
T TIGR02708 233 VKG--PQCPEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVF------DSGVRRG--------Q 296 (367)
T ss_pred EeC--CCCHHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEe------eCCcCCH--------H
Confidence 455 557999999999999999877631 11122234688888887763 67543 3445444 6
Q ss_pred HHHHHHHcCCCEEEEee
Q psy7930 87 DCHQFVESGADGFVIGA 103 (146)
Q Consensus 87 dI~~~~~~GadG~VfG~ 103 (146)
||..+..+|||++-+|=
T Consensus 297 Dv~KaLalGAd~V~igR 313 (367)
T TIGR02708 297 HVFKALASGADLVALGR 313 (367)
T ss_pred HHHHHHHcCCCEEEEcH
Confidence 77778889999999984
No 178
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=91.66 E-value=5 Score=31.85 Aligned_cols=68 Identities=28% Similarity=0.324 Sum_probs=46.4
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCC-cccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFD-FVFSQAEKEIMALDCHQFVESGADG 98 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gd-F~Ys~~E~~~M~~dI~~~~~~GadG 98 (146)
+-+.++.++|+.=++. .++..++.+++..++|+....|. ...+ -++-.. -.++++.++++|+|.
T Consensus 31 ~~a~~~~~~G~~~~~~----------~~~~~~~~i~~~~~iPil~~~~~-~~~~~~~~ig~----~~~~~~~a~~aGad~ 95 (219)
T cd04729 31 AMALAAVQGGAVGIRA----------NGVEDIRAIRARVDLPIIGLIKR-DYPDSEVYITP----TIEEVDALAAAGADI 95 (219)
T ss_pred HHHHHHHHCCCeEEEc----------CCHHHHHHHHHhCCCCEEEEEec-CCCCCCceeCC----CHHHHHHHHHcCCCE
Confidence 4466678899987773 66789999988889999664554 2211 111111 124789999999998
Q ss_pred EEEe
Q psy7930 99 FVIG 102 (146)
Q Consensus 99 ~VfG 102 (146)
+++.
T Consensus 96 I~~~ 99 (219)
T cd04729 96 IALD 99 (219)
T ss_pred EEEe
Confidence 8775
No 179
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=91.63 E-value=4.3 Score=34.74 Aligned_cols=110 Identities=24% Similarity=0.312 Sum_probs=70.2
Q ss_pred ceeEEEecCHHH----HHHHHHcCCCEEEecCCC------CCC-C--C--CC--CHHHHHHHHhhC--CCcEEEEEccCC
Q psy7930 10 TTLEVCVDSVAS----ALAAVRGGADRLELCAAL------SEG-G--L--TP--TLGLYRVIKRLV--LVPVFVMIRVRA 70 (146)
Q Consensus 10 ~~lEvcv~s~~~----a~~A~~~GAdRIELc~~l------~~G-G--l--TP--S~g~i~~~~~~~--~ipv~vMIRP~R 70 (146)
+.+-+.-.+++. |..+++.|+|-|||+-+= .-| | | .| ...+++.+++.+ ++||.|=||+
T Consensus 65 ~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~-- 142 (312)
T PRK10550 65 VRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRL-- 142 (312)
T ss_pred EEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEEC--
Confidence 568888888754 556778899999999543 123 2 2 33 234555566666 4898888887
Q ss_pred CCCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeecCC----CC-cCHHHHHHHHHHhCCCCeE
Q psy7930 71 GFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGE----QE-IDIEFIRQLKTIIGDRPIT 128 (146)
Q Consensus 71 ~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~d----g~-iD~~~~~~Li~~a~~~~vt 128 (146)
| |. +.+|. .+=++.+.+.|+|.+.+-.=|.. |. +|.+.++++.+.. ++||.
T Consensus 143 g--~~-~~~~~---~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~-~iPVi 198 (312)
T PRK10550 143 G--WD-SGERK---FEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRL-TIPVI 198 (312)
T ss_pred C--CC-CchHH---HHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhc-CCcEE
Confidence 3 21 22232 34456678899999999543432 22 5888888888765 35554
No 180
>PLN02803 beta-amylase
Probab=91.62 E-value=0.6 Score=43.37 Aligned_cols=74 Identities=20% Similarity=0.292 Sum_probs=54.5
Q ss_pred CCCcEEEEEccCCCCCcccCHHHH---HHHHHHHHHHHHcCCCEEEE----eeecC--CCCcCHHHHHHHHHHhC--CCC
Q psy7930 58 VLVPVFVMIRVRAGFDFVFSQAEK---EIMALDCHQFVESGADGFVI----GALTG--EQEIDIEFIRQLKTIIG--DRP 126 (146)
Q Consensus 58 ~~ipv~vMIRP~R~gdF~Ys~~E~---~~M~~dI~~~~~~GadG~Vf----G~L~~--dg~iD~~~~~~Li~~a~--~~~ 126 (146)
..+||+||.=- |-+=++..+ +.|..+++.+|++|+|||.+ |+.-. .++.|...=++|.+.++ |++
T Consensus 84 ~~vpvyVMlPL----d~V~~~~~~~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLK 159 (548)
T PLN02803 84 SGVPVFVMLPL----DTVTMGGNLNKPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLK 159 (548)
T ss_pred CceeEEEEeec----ceeccCCcccCHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCe
Confidence 46999999854 222222334 78999999999999999987 66654 67899999999999998 566
Q ss_pred eEEeecccC
Q psy7930 127 ITFHRAFDV 135 (146)
Q Consensus 127 vtFHRAFD~ 135 (146)
+--=+.|-+
T Consensus 160 lq~vmSFHq 168 (548)
T PLN02803 160 LQVVMSFHQ 168 (548)
T ss_pred EEEEEEecc
Confidence 544444443
No 181
>PLN02591 tryptophan synthase
Probab=91.53 E-value=1.2 Score=37.20 Aligned_cols=69 Identities=23% Similarity=0.269 Sum_probs=48.7
Q ss_pred HHHHHHHcCCCEEEecCCCCCCCCC----CC-HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930 21 SALAAVRGGADRLELCAALSEGGLT----PT-LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG 95 (146)
Q Consensus 21 ~a~~A~~~GAdRIELc~~l~~GGlT----PS-~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G 95 (146)
-+....+..-.-|.+.+.....|.+ +. ...++.+++..++||.|= |--+. .+|++.+.++|
T Consensus 146 ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vG--------FGI~~------~e~v~~~~~~G 211 (250)
T PLN02591 146 RMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVG--------FGISK------PEHAKQIAGWG 211 (250)
T ss_pred HHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEe--------CCCCC------HHHHHHHHhcC
Confidence 3666777778899998877666652 33 334888888888998651 22221 25778889999
Q ss_pred CCEEEEee
Q psy7930 96 ADGFVIGA 103 (146)
Q Consensus 96 adG~VfG~ 103 (146)
|||+|+|=
T Consensus 212 ADGvIVGS 219 (250)
T PLN02591 212 ADGVIVGS 219 (250)
T ss_pred CCEEEECH
Confidence 99999993
No 182
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=91.52 E-value=3.1 Score=33.51 Aligned_cols=80 Identities=16% Similarity=0.095 Sum_probs=54.7
Q ss_pred HHHHHHHHcCCCEEEecCCCCCC--CCCCCHHHHHHHHh---hCCCcEEEEEccCCCCCcccCH-----HHHHHHHHHHH
Q psy7930 20 ASALAAVRGGADRLELCAALSEG--GLTPTLGLYRVIKR---LVLVPVFVMIRVRAGFDFVFSQ-----AEKEIMALDCH 89 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~G--GlTPS~g~i~~~~~---~~~ipv~vMIRP~R~gdF~Ys~-----~E~~~M~~dI~ 89 (146)
.+...+.+.|.+-+||-..-..- +...+...++++++ ..++++.+ .-| ...+++-.+ ..++.|++-|+
T Consensus 14 ~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls~-h~p-~~~nl~s~d~~~r~~~~~~l~~~i~ 91 (273)
T smart00518 14 KAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSV-HAP-YLINLASPDKEKVEKSIERLIDEIK 91 (273)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEE-ECC-ceecCCCCCHHHHHHHHHHHHHHHH
Confidence 56788999999999998654322 33345555555554 45788644 346 545555432 23456999999
Q ss_pred HHHHcCCCEEEE
Q psy7930 90 QFVESGADGFVI 101 (146)
Q Consensus 90 ~~~~~GadG~Vf 101 (146)
.++++|++.+|+
T Consensus 92 ~A~~lGa~~vv~ 103 (273)
T smart00518 92 RCEELGIKALVF 103 (273)
T ss_pred HHHHcCCCEEEE
Confidence 999999999887
No 183
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=91.46 E-value=6.4 Score=31.71 Aligned_cols=107 Identities=10% Similarity=0.009 Sum_probs=63.2
Q ss_pred CHH-HHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCC----Cccc-----C-HHHHHHHHH
Q psy7930 18 SVA-SALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGF----DFVF-----S-QAEKEIMAL 86 (146)
Q Consensus 18 s~~-~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~g----dF~Y-----s-~~E~~~M~~ 86 (146)
+++ .+..|.+.|-+-|||.... +. ...-+++..+..++.+..+-=| .++ .+.+ + +.-.+.+++
T Consensus 16 ~l~~~l~~~a~~Gf~~VEl~~~~---~~--~~~~~~~~l~~~gl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (258)
T PRK09997 16 DFLARFEKAAQCGFRGVEFMFPY---DY--DIEELKQVLASNKLEHTLHNLP-AGDWAAGERGIACIPGREEEFRDGVAA 89 (258)
T ss_pred CHHHHHHHHHHhCCCEEEEcCCC---CC--CHHHHHHHHHHcCCcEEEEcCC-CCccccCcCccccCCCcHHHHHHHHHH
Confidence 555 5677889999999996521 12 3566666667778777543224 222 1111 1 222566888
Q ss_pred HHHHHHHcCCCEEEE--eeecCCCCcC------HHHHHHHHHHhC--CCCeEEe
Q psy7930 87 DCHQFVESGADGFVI--GALTGEQEID------IEFIRQLKTIIG--DRPITFH 130 (146)
Q Consensus 87 dI~~~~~~GadG~Vf--G~L~~dg~iD------~~~~~~Li~~a~--~~~vtFH 130 (146)
-|+.++++|++-|++ |...++..-+ .+.++++.+.|. |+.+.+|
T Consensus 90 ~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE 143 (258)
T PRK09997 90 AIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIE 143 (258)
T ss_pred HHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 899999999997654 3332221111 133455555543 7888886
No 184
>PRK04302 triosephosphate isomerase; Provisional
Probab=91.43 E-value=1.5 Score=35.17 Aligned_cols=75 Identities=25% Similarity=0.369 Sum_probs=47.4
Q ss_pred EEecCHHHHHHHHHcCCCEEEecCCCCCC-CCC---CCHHHHHH----HHhhC-CCcEEEEEccCCCCCcccCHHHHHHH
Q psy7930 14 VCVDSVASALAAVRGGADRLELCAALSEG-GLT---PTLGLYRV----IKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIM 84 (146)
Q Consensus 14 vcv~s~~~a~~A~~~GAdRIELc~~l~~G-GlT---PS~g~i~~----~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M 84 (146)
+|+.+.+.+..+.+.|.+-|.+...-..| |++ +....+++ +++.. ++||.+ ||+ +-++
T Consensus 119 ~~v~~~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~------Ggg-I~~~------ 185 (223)
T PRK04302 119 VCVNNPETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLC------GAG-ISTG------ 185 (223)
T ss_pred EEcCCHHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEE------ECC-CCCH------
Confidence 79999999999999999999987631122 111 33333433 44422 456532 222 2233
Q ss_pred HHHHHHHHHcCCCEEEEe
Q psy7930 85 ALDCHQFVESGADGFVIG 102 (146)
Q Consensus 85 ~~dI~~~~~~GadG~VfG 102 (146)
++++.+.+.|+|||++|
T Consensus 186 -e~~~~~~~~gadGvlVG 202 (223)
T PRK04302 186 -EDVKAALELGADGVLLA 202 (223)
T ss_pred -HHHHHHHcCCCCEEEEe
Confidence 45666788999999999
No 185
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=91.36 E-value=3.2 Score=35.87 Aligned_cols=101 Identities=12% Similarity=0.091 Sum_probs=68.7
Q ss_pred CHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930 18 SVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD 97 (146)
Q Consensus 18 s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad 97 (146)
+.+++..|.+.|++.|-++.....-- .+...++.+++ .+..+. +-+ --.|.|+++++..+ ++.+.+.|++
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~e~d--~~~~~i~~ak~-~G~~v~--~~l--~~s~~~~~e~l~~~---a~~~~~~Ga~ 158 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCTEAD--VSEQHIGMARE-LGMDTV--GFL--MMSHMTPPEKLAEQ---AKLMESYGAD 158 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccchHH--HHHHHHHHHHH-cCCeEE--EEE--EcccCCCHHHHHHH---HHHHHhcCCC
Confidence 78999999999999999987543321 23444555544 243332 222 12256777766554 4556788999
Q ss_pred EEEEeeecCCCCcCHHHHHHHHHHhC-----CCCeEEe
Q psy7930 98 GFVIGALTGEQEIDIEFIRQLKTIIG-----DRPITFH 130 (146)
Q Consensus 98 G~VfG~L~~dg~iD~~~~~~Li~~a~-----~~~vtFH 130 (146)
.| .+-+.-|....+.+.+++.+.+ +.++-||
T Consensus 159 ~i--~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H 194 (333)
T TIGR03217 159 CV--YIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFH 194 (333)
T ss_pred EE--EEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEE
Confidence 65 5668889999999999888875 2678888
No 186
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=91.27 E-value=2.4 Score=37.07 Aligned_cols=110 Identities=16% Similarity=-0.010 Sum_probs=67.4
Q ss_pred eEEEecC---HHHHHHHHHcCCCEEEecCCCCCC------CCCCC--HHHHHHHHhh---CCCcEEEEEccCCCCCcccC
Q psy7930 12 LEVCVDS---VASALAAVRGGADRLELCAALSEG------GLTPT--LGLYRVIKRL---VLVPVFVMIRVRAGFDFVFS 77 (146)
Q Consensus 12 lEvcv~s---~~~a~~A~~~GAdRIELc~~l~~G------GlTPS--~g~i~~~~~~---~~ipv~vMIRP~R~gdF~Ys 77 (146)
..+++.+ .+++..|.+.|+++|.++...+.- |.|+. ...+..+.+. .+.. |.+-+ .-.+.++
T Consensus 68 ~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~--v~~~~--ed~~r~~ 143 (378)
T PRK11858 68 ASILALNRAVKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLY--VSFSA--EDASRTD 143 (378)
T ss_pred eEEEEEcccCHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe--EEEEe--ccCCCCC
Confidence 4556655 889999999999999998643221 23331 1222222222 2443 34444 2223445
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC---CCCeEEe
Q psy7930 78 QAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG---DRPITFH 130 (146)
Q Consensus 78 ~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~---~~~vtFH 130 (146)
.+.+. +=++.+.++|++.|.+- +.-|......+.+++...+ +.++-||
T Consensus 144 ~~~l~---~~~~~~~~~Ga~~I~l~--DT~G~~~P~~v~~lv~~l~~~~~~~l~~H 194 (378)
T PRK11858 144 LDFLI---EFAKAAEEAGADRVRFC--DTVGILDPFTMYELVKELVEAVDIPIEVH 194 (378)
T ss_pred HHHHH---HHHHHHHhCCCCEEEEe--ccCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 54444 45556778899987664 6678888888888887764 4677777
No 187
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=91.20 E-value=3.2 Score=30.44 Aligned_cols=96 Identities=23% Similarity=0.253 Sum_probs=59.3
Q ss_pred CHHHHHHHHHcCCCEEEecCCC-CCCCC-CCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930 18 SVASALAAVRGGADRLELCAAL-SEGGL-TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG 95 (146)
Q Consensus 18 s~~~a~~A~~~GAdRIELc~~l-~~GGl-TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G 95 (146)
..+.+..+.++|++-+++-... ..-+. +.....++.+++..++|+.+.+.-....++.. .-.+.++++|
T Consensus 14 ~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~a~~~~~~g 84 (200)
T cd04722 14 PVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVD---------IAAAAARAAG 84 (200)
T ss_pred HHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhh---------HHHHHHHHcC
Confidence 3677888899999999988632 22222 22224577777778899888776511121111 1157889999
Q ss_pred CCEEEEeeecCCC-CcCHHHHHHHHHHh
Q psy7930 96 ADGFVIGALTGEQ-EIDIEFIRQLKTII 122 (146)
Q Consensus 96 adG~VfG~L~~dg-~iD~~~~~~Li~~a 122 (146)
+|++.++.-.... ....+.++.+.+..
T Consensus 85 ~d~v~l~~~~~~~~~~~~~~~~~i~~~~ 112 (200)
T cd04722 85 ADGVEIHGAVGYLAREDLELIRELREAV 112 (200)
T ss_pred CCEEEEeccCCcHHHHHHHHHHHHHHhc
Confidence 9999988655432 12455566666554
No 188
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=91.17 E-value=3.5 Score=34.84 Aligned_cols=111 Identities=14% Similarity=0.012 Sum_probs=67.5
Q ss_pred eEEEecCHHHHHHHHHcCCCEEEecCCCCC------CCCCCC--HHHHHHHHhh---CCCcEEE--E--E-ccCCCCCcc
Q psy7930 12 LEVCVDSVASALAAVRGGADRLELCAALSE------GGLTPT--LGLYRVIKRL---VLVPVFV--M--I-RVRAGFDFV 75 (146)
Q Consensus 12 lEvcv~s~~~a~~A~~~GAdRIELc~~l~~------GGlTPS--~g~i~~~~~~---~~ipv~v--M--I-RP~R~gdF~ 75 (146)
+-..+-+.++...|.+.|.+.|-+....+. =|.|+. ...++.+.++ .++.|.+ + . -| -.| .
T Consensus 75 ~~~l~~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~-~~~--~ 151 (287)
T PRK05692 75 YAALTPNLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCP-YEG--E 151 (287)
T ss_pred EEEEecCHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCC-CCC--C
Confidence 334456999999999999999999964431 234442 2223333322 2444432 1 2 24 222 3
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC----CCCeEEe
Q psy7930 76 FSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG----DRPITFH 130 (146)
Q Consensus 76 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~----~~~vtFH 130 (146)
++.+ .+.+=++.+.++|+|.|.+ -+.-|......+.++++..+ +.++-||
T Consensus 152 ~~~~---~~~~~~~~~~~~G~d~i~l--~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H 205 (287)
T PRK05692 152 VPPE---AVADVAERLFALGCYEISL--GDTIGVGTPGQVRAVLEAVLAEFPAERLAGH 205 (287)
T ss_pred CCHH---HHHHHHHHHHHcCCcEEEe--ccccCccCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 4444 4445566677889996544 46778888888888877654 3667777
No 189
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=91.15 E-value=3.5 Score=35.65 Aligned_cols=102 Identities=11% Similarity=0.074 Sum_probs=67.6
Q ss_pred cCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCC
Q psy7930 17 DSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGA 96 (146)
Q Consensus 17 ~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Ga 96 (146)
.+.+++..|.+.|++.|-++.....- -.+...++.+++ .+..|.+ -+ --.+.|+++++..+ ++.+.++|+
T Consensus 89 ~~~~dl~~a~~~gvd~iri~~~~~e~--~~~~~~i~~ak~-~G~~v~~--~l--~~a~~~~~e~l~~~---a~~~~~~Ga 158 (337)
T PRK08195 89 GTVDDLKMAYDAGVRVVRVATHCTEA--DVSEQHIGLARE-LGMDTVG--FL--MMSHMAPPEKLAEQ---AKLMESYGA 158 (337)
T ss_pred ccHHHHHHHHHcCCCEEEEEEecchH--HHHHHHHHHHHH-CCCeEEE--EE--EeccCCCHHHHHHH---HHHHHhCCC
Confidence 37899999999999999988644331 123444444444 2333322 22 11245677776655 666778899
Q ss_pred CEEEEeeecCCCCcCHHHHHHHHHHhC-----CCCeEEe
Q psy7930 97 DGFVIGALTGEQEIDIEFIRQLKTIIG-----DRPITFH 130 (146)
Q Consensus 97 dG~VfG~L~~dg~iD~~~~~~Li~~a~-----~~~vtFH 130 (146)
+.| .+-+.-|....+.+.+++.+.+ +.++-||
T Consensus 159 ~~i--~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H 195 (337)
T PRK08195 159 QCV--YVVDSAGALLPEDVRDRVRALRAALKPDTQVGFH 195 (337)
T ss_pred CEE--EeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 975 5557788888888888888774 4678888
No 190
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=91.15 E-value=5.4 Score=31.50 Aligned_cols=89 Identities=26% Similarity=0.300 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCCEEEecCC-CCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930 19 VASALAAVRGGADRLELCAA-LSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD 97 (146)
Q Consensus 19 ~~~a~~A~~~GAdRIELc~~-l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad 97 (146)
.+-|..-.+.|++.+-+-+- -..+|......+++.+++.+++|+.+ +| ..-+. +|++.+.+.|||
T Consensus 32 ~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~~------~G-gI~~~-------e~~~~~~~~Gad 97 (234)
T cd04732 32 VEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQV------GG-GIRSL-------EDIERLLDLGVS 97 (234)
T ss_pred HHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEEE------eC-CcCCH-------HHHHHHHHcCCC
Confidence 34555566789999999842 12234556788999999988888754 33 34453 455556668999
Q ss_pred EEEEeeecCCCCcCHHHHHHHHHHhCC
Q psy7930 98 GFVIGALTGEQEIDIEFIRQLKTIIGD 124 (146)
Q Consensus 98 G~VfG~L~~dg~iD~~~~~~Li~~a~~ 124 (146)
.+++|-..-. |.+.++++.+..+.
T Consensus 98 ~vvigs~~l~---dp~~~~~i~~~~g~ 121 (234)
T cd04732 98 RVIIGTAAVK---NPELVKELLKEYGG 121 (234)
T ss_pred EEEECchHHh---ChHHHHHHHHHcCC
Confidence 9999876532 46667777776543
No 191
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=91.11 E-value=1.2 Score=37.40 Aligned_cols=64 Identities=16% Similarity=-0.024 Sum_probs=41.2
Q ss_pred CCCEEEecCC-CCCCCC-----CC--CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc--CCCE
Q psy7930 29 GADRLELCAA-LSEGGL-----TP--TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES--GADG 98 (146)
Q Consensus 29 GAdRIELc~~-l~~GGl-----TP--S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~--GadG 98 (146)
|||-|||+-+ ....|. .| -..+++.+++.+++||.|=||| - + +..++.. =.+.+.+. |+||
T Consensus 119 ~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p-~---~--~~~~~~~---~a~~l~~~~~G~~g 189 (294)
T cd04741 119 FPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVKTPP-Y---T--DPAQFDT---LAEALNAFACPISF 189 (294)
T ss_pred cccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCC-C---C--CHHHHHH---HHHHHhccccCCcE
Confidence 7999999743 222222 22 2345666667779999999999 2 2 4445443 33445667 9999
Q ss_pred EEE
Q psy7930 99 FVI 101 (146)
Q Consensus 99 ~Vf 101 (146)
|+.
T Consensus 190 i~~ 192 (294)
T cd04741 190 ITA 192 (294)
T ss_pred EEE
Confidence 995
No 192
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=91.08 E-value=2.1 Score=35.05 Aligned_cols=104 Identities=19% Similarity=0.098 Sum_probs=65.7
Q ss_pred cCHHHHHHHHHcCCCEEEecCCCCC------CCCCCCH------HHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHH
Q psy7930 17 DSVASALAAVRGGADRLELCAALSE------GGLTPTL------GLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIM 84 (146)
Q Consensus 17 ~s~~~a~~A~~~GAdRIELc~~l~~------GGlTPS~------g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M 84 (146)
-+.+++..|.+.|.++|-++...+. =|.|+.. ..++.+++ .++ .|.+-+ .-.+.++.+++..
T Consensus 70 ~~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~-~G~--~v~~~~--~~~~~~~~~~~~~- 143 (259)
T cd07939 70 AVKEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKD-RGL--FVSVGA--EDASRADPDFLIE- 143 (259)
T ss_pred CCHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-CCC--eEEEee--ccCCCCCHHHHHH-
Confidence 5788999999999999999853211 1233332 12222222 244 344554 2233455555544
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC---CCCeEEe
Q psy7930 85 ALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG---DRPITFH 130 (146)
Q Consensus 85 ~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~---~~~vtFH 130 (146)
=++.+.++|++.|.+ -+.-|....+.+.+++...+ +.++-||
T Consensus 144 --~~~~~~~~G~~~i~l--~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H 188 (259)
T cd07939 144 --FAEVAQEAGADRLRF--ADTVGILDPFTTYELIRRLRAATDLPLEFH 188 (259)
T ss_pred --HHHHHHHCCCCEEEe--CCCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 455667889998655 37778888899999888765 4677777
No 193
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=90.96 E-value=5.7 Score=31.55 Aligned_cols=101 Identities=19% Similarity=0.153 Sum_probs=66.5
Q ss_pred cCHH-HHHHHHHcCCCEEEecCCCCCCCCCCC----HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHH-----HHHHHH
Q psy7930 17 DSVA-SALAAVRGGADRLELCAALSEGGLTPT----LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAE-----KEIMAL 86 (146)
Q Consensus 17 ~s~~-~a~~A~~~GAdRIELc~~l~~GGlTPS----~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E-----~~~M~~ 86 (146)
.+++ -...+.+.|-+-+||.. ++.-|. ...++.+.+..++.+...... ... |.=.+++ ++.+++
T Consensus 15 ~~l~~~l~~~~~~G~~gvEi~~----~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~-~~~-~~~~~~~~~~~~~~~~~~ 88 (274)
T COG1082 15 LPLEEILRKAAELGFDGVELSP----GDLFPADYKELAELKELLADYGLEITSLAPF-SNN-LLSPDEEEREEALEELKR 88 (274)
T ss_pred CCHHHHHHHHHHhCCCeEecCC----cccCCchhhhHHHHHHHHHHcCcEEEeeccc-CCC-cCCCchhhHHHHHHHHHH
Confidence 4444 44678888999999986 444443 577777777778887665544 222 3333332 888999
Q ss_pred HHHHHHHcCCCEEEEee--ecCCCC-----cC----HHHHHHHHHHhC
Q psy7930 87 DCHQFVESGADGFVIGA--LTGEQE-----ID----IEFIRQLKTIIG 123 (146)
Q Consensus 87 dI~~~~~~GadG~VfG~--L~~dg~-----iD----~~~~~~Li~~a~ 123 (146)
-|+.++++|++.+|+-. ...... .+ .+.+.+|.+.|+
T Consensus 89 ~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~ 136 (274)
T COG1082 89 AIELAKELGAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAE 136 (274)
T ss_pred HHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHH
Confidence 88899999999988444 333322 12 566777777765
No 194
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=90.95 E-value=2.1 Score=34.53 Aligned_cols=71 Identities=30% Similarity=0.433 Sum_probs=52.4
Q ss_pred ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHH
Q psy7930 16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVE 93 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~ 93 (146)
+.|++++..|.+.|||-|=+= ..+ ..+...++.+++.. ++|+. | -||= -.+++..+.+
T Consensus 111 ~~t~~E~~~A~~~Gad~vk~F---pa~--~~G~~~l~~l~~~~~~~ipvv----a-iGGI----------~~~n~~~~~~ 170 (206)
T PRK09140 111 VATPTEAFAALRAGAQALKLF---PAS--QLGPAGIKALRAVLPPDVPVF----A-VGGV----------TPENLAPYLA 170 (206)
T ss_pred cCCHHHHHHHHHcCCCEEEEC---CCC--CCCHHHHHHHHhhcCCCCeEE----E-ECCC----------CHHHHHHHHH
Confidence 788999999999999999872 222 23477888888877 37764 4 5661 2278899999
Q ss_pred cCCCEEEEe-eecC
Q psy7930 94 SGADGFVIG-ALTG 106 (146)
Q Consensus 94 ~GadG~VfG-~L~~ 106 (146)
+|++++.+| .|..
T Consensus 171 aGa~~vav~s~l~~ 184 (206)
T PRK09140 171 AGAAGFGLGSALYR 184 (206)
T ss_pred CCCeEEEEehHhcc
Confidence 999999854 4543
No 195
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=90.85 E-value=2.7 Score=34.61 Aligned_cols=100 Identities=18% Similarity=0.252 Sum_probs=66.5
Q ss_pred HHHHHHcCCCEEEe--------cCCCCCCCCCCCHHHHHH---HHhhCC--CcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930 22 ALAAVRGGADRLEL--------CAALSEGGLTPTLGLYRV---IKRLVL--VPVFVMIRVRAGFDFVFSQAEKEIMALDC 88 (146)
Q Consensus 22 a~~A~~~GAdRIEL--------c~~l~~GGlTPS~g~i~~---~~~~~~--ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI 88 (146)
+....+.|++=|-+ |.++..-.+-|.-..++. +++..+ .++.|+-|- -.|.-...-++.-.+-.
T Consensus 90 v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiART---Da~~~~~~~~~eai~Ra 166 (243)
T cd00377 90 VRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIART---DALLAGEEGLDEAIERA 166 (243)
T ss_pred HHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEc---CchhccCCCHHHHHHHH
Confidence 44556789999999 888755556555444444 444443 367777773 11221122356667778
Q ss_pred HHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEEe
Q psy7930 89 HQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFH 130 (146)
Q Consensus 89 ~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtFH 130 (146)
+.++++|||++.+=.++ |.+.++++.+.. +.|+.+.
T Consensus 167 ~ay~~AGAD~v~v~~~~-----~~~~~~~~~~~~-~~Pl~~~ 202 (243)
T cd00377 167 KAYAEAGADGIFVEGLK-----DPEEIRAFAEAP-DVPLNVN 202 (243)
T ss_pred HHHHHcCCCEEEeCCCC-----CHHHHHHHHhcC-CCCEEEE
Confidence 89999999998875554 788899988874 5677665
No 196
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=90.85 E-value=1.3 Score=36.59 Aligned_cols=71 Identities=17% Similarity=0.204 Sum_probs=48.7
Q ss_pred cCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC-CcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930 17 DSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL-VPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG 95 (146)
Q Consensus 17 ~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~-ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G 95 (146)
+.++=+..++++|||-|-+- ....|+-.+....++++++.++ +||.. -||=| |.++ +..+.+.|
T Consensus 149 ~~~~~a~~l~~aGad~i~Vd-~~~~g~~~a~~~~I~~i~~~~~~ipIIg-----NGgI~--s~ed-------a~e~l~~G 213 (231)
T TIGR00736 149 DELIDALNLVDDGFDGIHVD-AMYPGKPYADMDLLKILSEEFNDKIIIG-----NNSID--DIES-------AKEMLKAG 213 (231)
T ss_pred hHHHHHHHHHHcCCCEEEEe-eCCCCCchhhHHHHHHHHHhcCCCcEEE-----ECCcC--CHHH-------HHHHHHhC
Confidence 44577888999999999884 3333432257889999999885 88643 36644 4444 44444469
Q ss_pred CCEEEEe
Q psy7930 96 ADGFVIG 102 (146)
Q Consensus 96 adG~VfG 102 (146)
||||-+|
T Consensus 214 Ad~Vmvg 220 (231)
T TIGR00736 214 ADFVSVA 220 (231)
T ss_pred CCeEEEc
Confidence 9999987
No 197
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=90.83 E-value=2.5 Score=36.73 Aligned_cols=105 Identities=16% Similarity=0.030 Sum_probs=65.5
Q ss_pred ecCHHHHHHHHHcCCCEEEecCCCCCC------CCCCC--HH----HHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHH
Q psy7930 16 VDSVASALAAVRGGADRLELCAALSEG------GLTPT--LG----LYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEI 83 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~~l~~G------GlTPS--~g----~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~ 83 (146)
--+.+++..|.+.|+++|.++...+.- |.|+. .. .++.+++ .+..| -+-+ ...+.++.+.+..
T Consensus 71 r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~-~G~~v--~~~~--eda~r~~~~~l~~ 145 (363)
T TIGR02090 71 RALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKE-HGLIV--EFSA--EDATRTDIDFLIK 145 (363)
T ss_pred ccCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-cCCEE--EEEE--eecCCCCHHHHHH
Confidence 347899999999999999997543211 33431 22 2222222 24433 3333 1123445555554
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC---CCCeEEe
Q psy7930 84 MALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG---DRPITFH 130 (146)
Q Consensus 84 M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~---~~~vtFH 130 (146)
+ ++.+.++|++.|.+- +.-|....+.+.++++..+ +.++-||
T Consensus 146 ~---~~~~~~~g~~~i~l~--DT~G~~~P~~v~~li~~l~~~~~~~l~~H 190 (363)
T TIGR02090 146 V---FKRAEEAGADRINIA--DTVGVLTPQKMEELIKKLKENVKLPISVH 190 (363)
T ss_pred H---HHHHHhCCCCEEEEe--CCCCccCHHHHHHHHHHHhcccCceEEEE
Confidence 4 566778999986553 6678888889999988875 4667777
No 198
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=90.76 E-value=2.2 Score=33.99 Aligned_cols=108 Identities=19% Similarity=0.217 Sum_probs=61.3
Q ss_pred HHHHHHHcCCCEEEecCCCCCCCCCCCH----HHHHHHHhhCCCcEEEEEccC-CCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930 21 SALAAVRGGADRLELCAALSEGGLTPTL----GLYRVIKRLVLVPVFVMIRVR-AGFDFVFSQAEKEIMALDCHQFVESG 95 (146)
Q Consensus 21 ~a~~A~~~GAdRIELc~~l~~GGlTPS~----g~i~~~~~~~~ipv~vMIRP~-R~gdF~Ys~~E~~~M~~dI~~~~~~G 95 (146)
++..+...|||=|||.-.+-.+ .+. ..++.+++..++|+.+-+|++ -||.|..++++.-.+ ++.+.+.|
T Consensus 15 ~~~~~~~~~~D~vElRlD~l~~---~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~l---l~~~~~~~ 88 (224)
T PF01487_consen 15 ELEEAESSGADAVELRLDYLEN---DSAEDISEQLAELRRSLDLPIIFTVRTKEEGGRFQGSEEEYLEL---LERAIRLG 88 (224)
T ss_dssp HHHHHHHTTTSEEEEEGGGSTT---TSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSSBSS-HHHHHHH---HHHHHHHT
T ss_pred HHHHHHhcCCCEEEEEeccccc---cChHHHHHHHHHHHHhCCCCEEEEecccccCCCCcCCHHHHHHH---HHHHHHcC
Confidence 3444555599999999876655 443 455666666799999999972 256676666555544 45566677
Q ss_pred CCEEEEeeecCCCCcCHHHHHHHHHHhCCCC--eEEeecccCCCCc
Q psy7930 96 ADGFVIGALTGEQEIDIEFIRQLKTIIGDRP--ITFHRAFDVVREP 139 (146)
Q Consensus 96 adG~VfG~L~~dg~iD~~~~~~Li~~a~~~~--vtFHRAFD~~~d~ 139 (146)
++.+-+=.= ..+......+...-++.+ +.+| =|+.+++.
T Consensus 89 ~d~iDiE~~----~~~~~~~~~~~~~~~~~~iI~S~H-~f~~tp~~ 129 (224)
T PF01487_consen 89 PDYIDIELD----LFPDDLKSRLAARKGGTKIILSYH-DFEKTPSW 129 (224)
T ss_dssp SSEEEEEGG----CCHHHHHHHHHHHHTTSEEEEEEE-ESS---TH
T ss_pred CCEEEEEcc----cchhHHHHHHHHhhCCCeEEEEec-cCCCCCCH
Confidence 888877321 122222223344445555 4555 57777654
No 199
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=90.65 E-value=3.1 Score=37.36 Aligned_cols=77 Identities=22% Similarity=0.251 Sum_probs=57.4
Q ss_pred ceeEEEecCHHHHHHHHHcCCCEEEecCCC----CCCCCCC-CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHH
Q psy7930 10 TTLEVCVDSVASALAAVRGGADRLELCAAL----SEGGLTP-TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIM 84 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l----~~GGlTP-S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M 84 (146)
.++=+-+-|.+++..|.+.|||.|-+-.-. ..+ .+| ....++.+.+..++||+.+ || -.
T Consensus 391 ~~iG~S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~-~~~~g~~~~~~~~~~~~~Pv~ai-----GG-I~--------- 454 (502)
T PLN02898 391 KIIGVSCKTPEQAEQAWKDGADYIGCGGVFPTNTKAN-NKTIGLDGLREVCEASKLPVVAI-----GG-IS--------- 454 (502)
T ss_pred CEEEEeCCCHHHHHHHhhcCCCEEEECCeecCCCCCC-CCCCCHHHHHHHHHcCCCCEEEE-----CC-CC---------
Confidence 467788899999999999999999875322 122 223 5788888888889998876 44 11
Q ss_pred HHHHHHHHHcCCC---EEEEe
Q psy7930 85 ALDCHQFVESGAD---GFVIG 102 (146)
Q Consensus 85 ~~dI~~~~~~Gad---G~VfG 102 (146)
.+++..++++|++ ||.++
T Consensus 455 ~~~~~~~~~~G~~~~~gvav~ 475 (502)
T PLN02898 455 ASNAASVMESGAPNLKGVAVV 475 (502)
T ss_pred HHHHHHHHHcCCCcCceEEEE
Confidence 1567889999999 98665
No 200
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=90.42 E-value=1.4 Score=41.05 Aligned_cols=66 Identities=24% Similarity=0.183 Sum_probs=48.7
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD 97 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad 97 (146)
+-+..+.+.|||+|=||+ ..|+++|. ..+++.+++.+++||++.--- ..|--+ .-...+.++|||
T Consensus 158 ~~a~~l~~~Gad~I~i~D--t~G~~~P~~~~~lv~~lk~~~~~pi~~H~Hn-t~Gla~----------An~laAv~aGad 224 (592)
T PRK09282 158 ELAKELEEMGCDSICIKD--MAGLLTPYAAYELVKALKEEVDLPVQLHSHC-TSGLAP----------MTYLKAVEAGVD 224 (592)
T ss_pred HHHHHHHHcCCCEEEECC--cCCCcCHHHHHHHHHHHHHhCCCeEEEEEcC-CCCcHH----------HHHHHHHHhCCC
Confidence 457788899999999999 47999994 678999998888898887665 444211 234455677876
Q ss_pred E
Q psy7930 98 G 98 (146)
Q Consensus 98 G 98 (146)
-
T Consensus 225 ~ 225 (592)
T PRK09282 225 I 225 (592)
T ss_pred E
Confidence 3
No 201
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=90.41 E-value=2.5 Score=36.16 Aligned_cols=73 Identities=21% Similarity=0.205 Sum_probs=49.4
Q ss_pred CHHHHHHHHH-cCCCEEEecCCC-----CCCCCCCCH----HHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHH
Q psy7930 18 SVASALAAVR-GGADRLELCAAL-----SEGGLTPTL----GLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALD 87 (146)
Q Consensus 18 s~~~a~~A~~-~GAdRIELc~~l-----~~GGlTPS~----g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~d 87 (146)
+.+.+..+.+ .+||-+||.-+. ...|-+ ++ ..++.+++.+++||.+=+.+ |..| .++
T Consensus 128 ~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~-df~~~~~~i~~l~~~~~vPVivK~~g-----~g~s-------~~~ 194 (326)
T cd02811 128 GVEEARRAVEMIEADALAIHLNPLQEAVQPEGDR-DFRGWLERIEELVKALSVPVIVKEVG-----FGIS-------RET 194 (326)
T ss_pred CHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCc-CHHHHHHHHHHHHHhcCCCEEEEecC-----CCCC-------HHH
Confidence 5666665555 689999996432 112322 24 56777888889998865555 3334 477
Q ss_pred HHHHHHcCCCEEEEee
Q psy7930 88 CHQFVESGADGFVIGA 103 (146)
Q Consensus 88 I~~~~~~GadG~VfG~ 103 (146)
++.+.+.|+|+|+++-
T Consensus 195 a~~l~~~Gvd~I~vsG 210 (326)
T cd02811 195 AKRLADAGVKAIDVAG 210 (326)
T ss_pred HHHHHHcCCCEEEECC
Confidence 8888999999999754
No 202
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=90.40 E-value=1.5 Score=38.63 Aligned_cols=92 Identities=17% Similarity=0.082 Sum_probs=57.5
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCC------------------CCCCHHHHHHHHhhC---CCcEEEEEccCCCCCcccCH
Q psy7930 20 ASALAAVRGGADRLELCAALSEGG------------------LTPTLGLYRVIKRLV---LVPVFVMIRVRAGFDFVFSQ 78 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GG------------------lTPS~g~i~~~~~~~---~ipv~vMIRP~R~gdF~Ys~ 78 (146)
..+..|.+.|||=|-..=-=..++ +..+...++.+.+.+ .+||. | .||.=. ++
T Consensus 221 ~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVv--i---AGG~k~-~~ 294 (348)
T PRK09250 221 QANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLI--N---SGGASK-GE 294 (348)
T ss_pred HHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEE--E---eCCCCC-CH
Confidence 347889999999998763111111 224455666667766 56654 4 466566 77
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHH
Q psy7930 79 AEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQL 118 (146)
Q Consensus 79 ~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~L 118 (146)
.|+-.|.+++-.=.+.|+.|+++|= |-=+.=|.++++-|
T Consensus 295 ~e~L~~v~~a~~~i~aGa~Gv~iGR-NIfQ~~~~ea~~~~ 333 (348)
T PRK09250 295 DDLLDAVRTAVINKRAGGMGLIIGR-KAFQRPMAEGVKLL 333 (348)
T ss_pred HHHHHHHHHHHHhhhcCCcchhhch-hhhcCCcHHHHHHH
Confidence 7877776666444779999999994 22223466666433
No 203
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=90.35 E-value=1.7 Score=36.03 Aligned_cols=69 Identities=32% Similarity=0.436 Sum_probs=47.0
Q ss_pred HHHHHHHHcCCCEEEecCCC----------------CCCCCCCC------HHHHHHHHhhCCCcEEEEEccCCCCCcccC
Q psy7930 20 ASALAAVRGGADRLELCAAL----------------SEGGLTPT------LGLYRVIKRLVLVPVFVMIRVRAGFDFVFS 77 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l----------------~~GGlTPS------~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys 77 (146)
+-+..++++|||-|.+...+ ..||++++ ...++++++.+++||.. -|| .+|
T Consensus 170 ~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~-----~GG--I~~ 242 (296)
T cd04740 170 EIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIG-----VGG--IAS 242 (296)
T ss_pred HHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEE-----ECC--CCC
Confidence 34667899999999885321 12566543 47888888888888754 244 233
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930 78 QAEKEIMALDCHQFVESGADGFVIG 102 (146)
Q Consensus 78 ~~E~~~M~~dI~~~~~~GadG~VfG 102 (146)
. +|+..+.++|||+|-+|
T Consensus 243 ~-------~da~~~l~~GAd~V~ig 260 (296)
T cd04740 243 G-------EDALEFLMAGASAVQVG 260 (296)
T ss_pred H-------HHHHHHHHcCCCEEEEc
Confidence 3 45555667899999988
No 204
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=90.32 E-value=1.3 Score=39.83 Aligned_cols=77 Identities=19% Similarity=0.280 Sum_probs=52.8
Q ss_pred EEecCHHHHHHHHHcCCCEEEecC-------CCCCCCC-CCCHHHHHHHHhhC---CCcEEEEEccCCCCCcccCHHHHH
Q psy7930 14 VCVDSVASALAAVRGGADRLELCA-------ALSEGGL-TPTLGLYRVIKRLV---LVPVFVMIRVRAGFDFVFSQAEKE 82 (146)
Q Consensus 14 vcv~s~~~a~~A~~~GAdRIELc~-------~l~~GGl-TPS~g~i~~~~~~~---~ipv~vMIRP~R~gdF~Ys~~E~~ 82 (146)
=.+.|.+++..+.+.|||-|-..- .=..-|. .|....+.++.+.. ++||. + .|+..++
T Consensus 275 g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~vi----a--dGGi~~~----- 343 (486)
T PRK05567 275 GNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVI----A--DGGIRYS----- 343 (486)
T ss_pred eccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEE----E--cCCCCCH-----
Confidence 456778999999999999997521 1111121 46677777666643 56643 3 3446655
Q ss_pred HHHHHHHHHHHcCCCEEEEeee
Q psy7930 83 IMALDCHQFVESGADGFVIGAL 104 (146)
Q Consensus 83 ~M~~dI~~~~~~GadG~VfG~L 104 (146)
.||..+..+|||.+++|-+
T Consensus 344 ---~di~kAla~GA~~v~~G~~ 362 (486)
T PRK05567 344 ---GDIAKALAAGASAVMLGSM 362 (486)
T ss_pred ---HHHHHHHHhCCCEEEECcc
Confidence 7889999999999999965
No 205
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=90.30 E-value=1.9 Score=36.99 Aligned_cols=66 Identities=21% Similarity=0.248 Sum_probs=45.7
Q ss_pred HHHHHHcCCCEEEecCCCC-CCCCCCC---------HHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHH
Q psy7930 22 ALAAVRGGADRLELCAALS-EGGLTPT---------LGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQ 90 (146)
Q Consensus 22 a~~A~~~GAdRIELc~~l~-~GGlTPS---------~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~ 90 (146)
+..++++|++-|.+=..-. ..|.+|+ +..++++++.+ ++||.. -|| +.|.++++.+.+
T Consensus 157 ~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~-----nGg--I~s~eda~~~l~---- 225 (333)
T PRK11815 157 VDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEI-----NGG--IKTLEEAKEHLQ---- 225 (333)
T ss_pred HHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEE-----ECC--cCCHHHHHHHHh----
Confidence 4567789999998764322 3466643 77888888875 888743 255 456666666553
Q ss_pred HHHcCCCEEEEe
Q psy7930 91 FVESGADGFVIG 102 (146)
Q Consensus 91 ~~~~GadG~VfG 102 (146)
|+|||.+|
T Consensus 226 ----~aDgVmIG 233 (333)
T PRK11815 226 ----HVDGVMIG 233 (333)
T ss_pred ----cCCEEEEc
Confidence 69999998
No 206
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=90.29 E-value=1.7 Score=38.62 Aligned_cols=74 Identities=23% Similarity=0.284 Sum_probs=55.0
Q ss_pred ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCC-----CCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHH
Q psy7930 10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLT-----PTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKE 82 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlT-----PS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~ 82 (146)
+++|| -|.+++..|.+.|+|-|-+-. .||.. |+...+.++.+.+ ++||.+ .|++...
T Consensus 249 ivKgV--~s~~dA~~a~~~Gvd~I~Vs~---hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~------dGGIr~g----- 312 (381)
T PRK11197 249 VIKGI--LDPEDARDAVRFGADGIVVSN---HGGRQLDGVLSSARALPAIADAVKGDITILA------DSGIRNG----- 312 (381)
T ss_pred EEEec--CCHHHHHHHHhCCCCEEEECC---CCCCCCCCcccHHHHHHHHHHHhcCCCeEEe------eCCcCcH-----
Confidence 35666 899999999999999998654 36643 4566666666655 477654 3446554
Q ss_pred HHHHHHHHHHHcCCCEEEEe
Q psy7930 83 IMALDCHQFVESGADGFVIG 102 (146)
Q Consensus 83 ~M~~dI~~~~~~GadG~VfG 102 (146)
.||..+..+||+++-+|
T Consensus 313 ---~Di~KALaLGA~~V~iG 329 (381)
T PRK11197 313 ---LDVVRMIALGADTVLLG 329 (381)
T ss_pred ---HHHHHHHHcCcCceeEh
Confidence 68899999999999998
No 207
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=90.26 E-value=7.3 Score=33.69 Aligned_cols=89 Identities=16% Similarity=0.130 Sum_probs=54.8
Q ss_pred HHHHHcCCCEEEec-------CCCCCC-CCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHH
Q psy7930 23 LAAVRGGADRLELC-------AALSEG-GLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVE 93 (146)
Q Consensus 23 ~~A~~~GAdRIELc-------~~l~~G-GlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~ 93 (146)
....+.|.+.||.- +.+..| ...|....++.+++.. +..+.+|++| --+ + .+|++.+.+
T Consensus 31 ~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~p-g~~----~-------~~dl~~a~~ 98 (333)
T TIGR03217 31 AALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLP-GIG----T-------VHDLKAAYD 98 (333)
T ss_pred HHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEecc-Ccc----C-------HHHHHHHHH
Confidence 44567799999994 223222 1235667777777655 5778889999 222 1 356777778
Q ss_pred cCCCEEEEeeecCCCCcCHHHHHHHHHHhC--CCCe
Q psy7930 94 SGADGFVIGALTGEQEIDIEFIRQLKTIIG--DRPI 127 (146)
Q Consensus 94 ~GadG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~v 127 (146)
.|+|.|-+.. ..... +..++.++.++ |+.+
T Consensus 99 ~gvd~iri~~--~~~e~--d~~~~~i~~ak~~G~~v 130 (333)
T TIGR03217 99 AGARTVRVAT--HCTEA--DVSEQHIGMARELGMDT 130 (333)
T ss_pred CCCCEEEEEe--ccchH--HHHHHHHHHHHHcCCeE
Confidence 8888766554 22222 34567777776 4443
No 208
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=90.25 E-value=1.5 Score=36.53 Aligned_cols=87 Identities=29% Similarity=0.340 Sum_probs=54.6
Q ss_pred HHHHHHHHcCCCEEEecCCC----------------CCCCCCCC------HHHHHHHHhhCCCcEEEEEccCCCCCcccC
Q psy7930 20 ASALAAVRGGADRLELCAAL----------------SEGGLTPT------LGLYRVIKRLVLVPVFVMIRVRAGFDFVFS 77 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l----------------~~GGlTPS------~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys 77 (146)
+-+..++++|+|-|.+-..+ ..||++++ ...+.++++.+++||.. -|| +.|
T Consensus 173 ~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~-----~GG--I~s 245 (300)
T TIGR01037 173 EIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIG-----VGG--ITS 245 (300)
T ss_pred HHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEE-----ECC--CCC
Confidence 44667889999999985321 23677743 36778888888888754 255 333
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEe-eecCCCCcCHHHHHHHHH
Q psy7930 78 QAEKEIMALDCHQFVESGADGFVIG-ALTGEQEIDIEFIRQLKT 120 (146)
Q Consensus 78 ~~E~~~M~~dI~~~~~~GadG~VfG-~L~~dg~iD~~~~~~Li~ 120 (146)
.+ |+..+.+.|||+|.+| .+-.++.+=....+.|.+
T Consensus 246 ~~-------da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~ 282 (300)
T TIGR01037 246 FE-------DALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIA 282 (300)
T ss_pred HH-------HHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHH
Confidence 43 3444556899999998 333455443444444433
No 209
>PRK12677 xylose isomerase; Provisional
Probab=90.22 E-value=3.7 Score=36.17 Aligned_cols=104 Identities=15% Similarity=0.110 Sum_probs=64.9
Q ss_pred HHHHHHHHcCCCEEEecCC-CCCCCCCCC-----HHHHHHHHhhCCCcEEEEE-c----c-CCCCCcccCHHH-----HH
Q psy7930 20 ASALAAVRGGADRLELCAA-LSEGGLTPT-----LGLYRVIKRLVLVPVFVMI-R----V-RAGFDFVFSQAE-----KE 82 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~-l~~GGlTPS-----~g~i~~~~~~~~ipv~vMI-R----P-~R~gdF~Ys~~E-----~~ 82 (146)
+.+..+.+.|++-|||... +..=+.++. ..-+++..+..++.|..+- + | -..|+|+-.+.+ ++
T Consensus 35 E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~lts~d~~~R~~Ai~ 114 (384)
T PRK12677 35 EAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDGAFTSNDRDVRRYALR 114 (384)
T ss_pred HHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCCcCCCCCHHHHHHHHH
Confidence 4556677889999999742 322344443 4456666666788765432 1 1 123568876553 66
Q ss_pred HHHHHHHHHHHcCCCEEEE--eeecC--CCCcCH--------HHHHHHHHHhC
Q psy7930 83 IMALDCHQFVESGADGFVI--GALTG--EQEIDI--------EFIRQLKTIIG 123 (146)
Q Consensus 83 ~M~~dI~~~~~~GadG~Vf--G~L~~--dg~iD~--------~~~~~Li~~a~ 123 (146)
.+++-|+.++++|++-||+ |.... +++.|. +.+++|.+.|.
T Consensus 115 ~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~ 167 (384)
T PRK12677 115 KVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVK 167 (384)
T ss_pred HHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999886 32211 233442 44556677774
No 210
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=90.16 E-value=1.5 Score=39.86 Aligned_cols=74 Identities=26% Similarity=0.280 Sum_probs=51.1
Q ss_pred EecCHHHHHHHHHcCCCEEEecCCCCCC--CCC--------CCHHHHHHHHhh---CCCcEEEEEccCCCCCcccCHHHH
Q psy7930 15 CVDSVASALAAVRGGADRLELCAALSEG--GLT--------PTLGLYRVIKRL---VLVPVFVMIRVRAGFDFVFSQAEK 81 (146)
Q Consensus 15 cv~s~~~a~~A~~~GAdRIELc~~l~~G--GlT--------PS~g~i~~~~~~---~~ipv~vMIRP~R~gdF~Ys~~E~ 81 (146)
.+.|.+++..+.++|||-|-..- ..| ++| |....+..+.+. .++||. | .|+..++
T Consensus 289 ~V~t~~~a~~~~~aGad~I~vg~--g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vI----a--dGGi~~~---- 356 (495)
T PTZ00314 289 NVVTADQAKNLIDAGADGLRIGM--GSGSICITQEVCAVGRPQASAVYHVARYARERGVPCI----A--DGGIKNS---- 356 (495)
T ss_pred CcCCHHHHHHHHHcCCCEEEECC--cCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEE----e--cCCCCCH----
Confidence 46778999999999999887632 222 244 655565555443 466753 3 3335544
Q ss_pred HHHHHHHHHHHHcCCCEEEEeee
Q psy7930 82 EIMALDCHQFVESGADGFVIGAL 104 (146)
Q Consensus 82 ~~M~~dI~~~~~~GadG~VfG~L 104 (146)
.||..+..+||+++++|=+
T Consensus 357 ----~di~kAla~GA~~Vm~G~~ 375 (495)
T PTZ00314 357 ----GDICKALALGADCVMLGSL 375 (495)
T ss_pred ----HHHHHHHHcCCCEEEECch
Confidence 6888999999999999965
No 211
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=90.13 E-value=1.1 Score=37.21 Aligned_cols=80 Identities=28% Similarity=0.371 Sum_probs=46.4
Q ss_pred eeEEEecC---HHHHH---HHHHcCCCEEEecC---CCCCCCCCCC------HHHHHHHHhhCCCcEEEEEccCCCCCcc
Q psy7930 11 TLEVCVDS---VASAL---AAVRGGADRLELCA---ALSEGGLTPT------LGLYRVIKRLVLVPVFVMIRVRAGFDFV 75 (146)
Q Consensus 11 ~lEvcv~s---~~~a~---~A~~~GAdRIELc~---~l~~GGlTPS------~g~i~~~~~~~~ipv~vMIRP~R~gdF~ 75 (146)
++=+...+ .++.. ...+.|||=|||+= |.. |+-++. ..+++.+++..++||.|=+-| +.
T Consensus 100 i~Si~~~~~~~~~d~~~~a~~~~~~ad~lElN~ScPn~~-~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL~p-----~~ 173 (295)
T PF01180_consen 100 IASINGDSEEEIEDWAELAKRLEAGADALELNLSCPNVP-GGRPFGQDPELVAEIVRAVREAVDIPVFVKLSP-----NF 173 (295)
T ss_dssp EEEE-TSSSGHHHHHHHHHHHHHHHCSEEEEESTSTTST-TSGGGGGHHHHHHHHHHHHHHHHSSEEEEEE-S-----TS
T ss_pred EEEeecCCchhHHHHHHHHHHhcCcCCceEEEeeccCCC-CccccccCHHHHHHHHHHHHhccCCCEEEEecC-----CC
Confidence 44455555 33322 23348999999973 333 444433 234555556679999999999 33
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCEEE
Q psy7930 76 FSQAEKEIMALDCHQFVESGADGFV 100 (146)
Q Consensus 76 Ys~~E~~~M~~dI~~~~~~GadG~V 100 (146)
.+...+.. +..+.+.|++||+
T Consensus 174 ~~~~~~~~----~~~~~~~g~~gi~ 194 (295)
T PF01180_consen 174 TDIEPFAI----AAELAADGADGIV 194 (295)
T ss_dssp SCHHHHHH----HHHHHTHTECEEE
T ss_pred CchHHHHH----HHHhhccceeEEE
Confidence 33333333 2334478999999
No 212
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=90.08 E-value=1.8 Score=37.66 Aligned_cols=74 Identities=24% Similarity=0.311 Sum_probs=52.2
Q ss_pred ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCC-----CCHHHHHHHHhh---C--CCcEEEEEccCCCCCcccCHH
Q psy7930 10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLT-----PTLGLYRVIKRL---V--LVPVFVMIRVRAGFDFVFSQA 79 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlT-----PS~g~i~~~~~~---~--~ipv~vMIRP~R~gdF~Ys~~ 79 (146)
++++| .+.+++..|.+.|+|-|-+-.+ ||+. |+...+.++++. + ++||.+. | +..+.
T Consensus 217 ivKgv--~~~~dA~~a~~~G~d~I~vsnh---gG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~-----G-GIr~G-- 283 (344)
T cd02922 217 VLKGV--QTVEDAVLAAEYGVDGIVLSNH---GGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVD-----G-GVRRG-- 283 (344)
T ss_pred EEEcC--CCHHHHHHHHHcCCCEEEEECC---CcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEe-----C-CCCCH--
Confidence 35666 6899999999999999999753 4443 455556666552 2 3665432 2 24333
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEe
Q psy7930 80 EKEIMALDCHQFVESGADGFVIG 102 (146)
Q Consensus 80 E~~~M~~dI~~~~~~GadG~VfG 102 (146)
.||..+..+||+.+-+|
T Consensus 284 ------~Dv~kalaLGA~aV~iG 300 (344)
T cd02922 284 ------TDVLKALCLGAKAVGLG 300 (344)
T ss_pred ------HHHHHHHHcCCCEEEEC
Confidence 78999999999999998
No 213
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=90.04 E-value=2.1 Score=36.68 Aligned_cols=76 Identities=21% Similarity=0.255 Sum_probs=53.1
Q ss_pred eeEEEe-cCHHHHHHHHHcCCCEEEecCCCCCCCC-------------------------CCCHHHHHHHHhhC-CCcEE
Q psy7930 11 TLEVCV-DSVASALAAVRGGADRLELCAALSEGGL-------------------------TPTLGLYRVIKRLV-LVPVF 63 (146)
Q Consensus 11 ~lEvcv-~s~~~a~~A~~~GAdRIELc~~l~~GGl-------------------------TPS~g~i~~~~~~~-~ipv~ 63 (146)
++|+.. .+.+.+...++.|+|-|.+- + .||+ .|+...+.++++.. ++||.
T Consensus 183 vK~~g~g~s~~~a~~l~~~Gvd~I~vs-G--~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIi 259 (326)
T cd02811 183 VKEVGFGISRETAKRLADAGVKAIDVA-G--AGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLI 259 (326)
T ss_pred EEecCCCCCHHHHHHHHHcCCCEEEEC-C--CCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEE
Confidence 445433 68899999999999999984 3 2663 23345666666666 77765
Q ss_pred EEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEee
Q psy7930 64 VMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGA 103 (146)
Q Consensus 64 vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~ 103 (146)
+ -|| +... .|+..+..+|||+|-+|-
T Consensus 260 a-----sGG-Ir~~--------~dv~kal~lGAd~V~i~~ 285 (326)
T cd02811 260 A-----SGG-IRNG--------LDIAKALALGADLVGMAG 285 (326)
T ss_pred E-----ECC-CCCH--------HHHHHHHHhCCCEEEEcH
Confidence 4 244 5533 677788889999999984
No 214
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=89.84 E-value=1.3 Score=36.40 Aligned_cols=65 Identities=22% Similarity=0.196 Sum_probs=48.7
Q ss_pred HHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930 19 VASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG 98 (146)
Q Consensus 19 ~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG 98 (146)
++-+.+++++|||=+=+-.- + +...++.+.+..+.|++++..| ++. .-+++.++++|++-
T Consensus 163 i~Ra~ay~~AGAD~v~v~~~------~-~~~~~~~~~~~~~~Pl~~~~~~--~~~-----------~~~~~~l~~lG~~~ 222 (243)
T cd00377 163 IERAKAYAEAGADGIFVEGL------K-DPEEIRAFAEAPDVPLNVNMTP--GGN-----------LLTVAELAELGVRR 222 (243)
T ss_pred HHHHHHHHHcCCCEEEeCCC------C-CHHHHHHHHhcCCCCEEEEecC--CCC-----------CCCHHHHHHCCCeE
Confidence 45567789999998866432 2 6788999989899999999888 332 23455566779999
Q ss_pred EEEee
Q psy7930 99 FVIGA 103 (146)
Q Consensus 99 ~VfG~ 103 (146)
+.+|.
T Consensus 223 v~~~~ 227 (243)
T cd00377 223 VSYGL 227 (243)
T ss_pred EEECh
Confidence 99985
No 215
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=89.75 E-value=3 Score=35.06 Aligned_cols=89 Identities=17% Similarity=0.233 Sum_probs=63.5
Q ss_pred HHHHHHHcCCCEEEecCCC-CCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEE
Q psy7930 21 SALAAVRGGADRLELCAAL-SEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGF 99 (146)
Q Consensus 21 ~a~~A~~~GAdRIELc~~l-~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~ 99 (146)
=|..-+++||.=|-....- ..|| |...++.+++.+++|| +|= ||..++.+ |...+.+|||.|
T Consensus 66 ~A~~y~~~GA~aISVlTe~~~F~G---s~~~l~~v~~~v~~Pv---L~K----DFIid~~Q-------I~ea~~~GADav 128 (247)
T PRK13957 66 IAKTYETLGASAISVLTDQSYFGG---SLEDLKSVSSELKIPV---LRK----DFILDEIQ-------IREARAFGASAI 128 (247)
T ss_pred HHHHHHHCCCcEEEEEcCCCcCCC---CHHHHHHHHHhcCCCE---Eec----cccCCHHH-------HHHHHHcCCCEE
Confidence 3555688899988655432 2333 7899999999999987 444 79988765 455778999999
Q ss_pred EEeeecCCCCcCHHHHHHHHHHhC--CCC--eEEe
Q psy7930 100 VIGALTGEQEIDIEFIRQLKTIIG--DRP--ITFH 130 (146)
Q Consensus 100 VfG~L~~dg~iD~~~~~~Li~~a~--~~~--vtFH 130 (146)
.+= -.-++.+.+++|++.|. ||+ |-.|
T Consensus 129 LLI----~~~L~~~~l~~l~~~a~~lGle~LVEVh 159 (247)
T PRK13957 129 LLI----VRILTPSQIKSFLKHASSLGMDVLVEVH 159 (247)
T ss_pred EeE----HhhCCHHHHHHHHHHHHHcCCceEEEEC
Confidence 432 23467779999999998 554 3445
No 216
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=89.66 E-value=1.3 Score=38.25 Aligned_cols=65 Identities=28% Similarity=0.345 Sum_probs=41.4
Q ss_pred CCCEEEec-CCCCCCCCCCC------HHHHHHHHhhCC-------CcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930 29 GADRLELC-AALSEGGLTPT------LGLYRVIKRLVL-------VPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES 94 (146)
Q Consensus 29 GAdRIELc-~~l~~GGlTPS------~g~i~~~~~~~~-------ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~ 94 (146)
.||-|||+ |.....|+.+. ..+++.+++..+ +||.|=+-| . ++.+++..| ++.+.+.
T Consensus 166 ~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP-~-----~~~~~i~~i---a~~~~~~ 236 (335)
T TIGR01036 166 LADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAP-D-----LTESDLEDI---ADSLVEL 236 (335)
T ss_pred hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCC-C-----CCHHHHHHH---HHHHHHh
Confidence 49999996 32222343322 345666666555 999999999 2 234444443 4556789
Q ss_pred CCCEEEEe
Q psy7930 95 GADGFVIG 102 (146)
Q Consensus 95 GadG~VfG 102 (146)
|+||++.-
T Consensus 237 GadGi~l~ 244 (335)
T TIGR01036 237 GIDGVIAT 244 (335)
T ss_pred CCcEEEEE
Confidence 99999974
No 217
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=89.61 E-value=2.9 Score=35.76 Aligned_cols=71 Identities=21% Similarity=0.305 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCCCEEEecCCCCCCCCCC---CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930 19 VASALAAVRGGADRLELCAALSEGGLTP---TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG 95 (146)
Q Consensus 19 ~~~a~~A~~~GAdRIELc~~l~~GGlTP---S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G 95 (146)
.+=+..+++.|++-|.+=..-..+|.++ -...++++++.+++||.. -|+ +.|.++.+.|. .+.|
T Consensus 151 ~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~-----nGd--I~t~~da~~~l------~~~g 217 (312)
T PRK10550 151 FEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIA-----NGE--IWDWQSAQQCM------AITG 217 (312)
T ss_pred HHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEE-----eCC--cCCHHHHHHHH------hccC
Confidence 3455678899999999976655666654 367899999999999743 244 55666666554 3479
Q ss_pred CCEEEEe
Q psy7930 96 ADGFVIG 102 (146)
Q Consensus 96 adG~VfG 102 (146)
+|||-+|
T Consensus 218 ~DgVmiG 224 (312)
T PRK10550 218 CDAVMIG 224 (312)
T ss_pred CCEEEEc
Confidence 9999998
No 218
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=89.59 E-value=2.7 Score=36.61 Aligned_cols=93 Identities=18% Similarity=0.168 Sum_probs=63.9
Q ss_pred EEecCHHHHHHHHHcCCCEEEecCCCCCCCCCC---CHHHHHHHHhhC----------CCcEEEEEccCCCCCcccCHHH
Q psy7930 14 VCVDSVASALAAVRGGADRLELCAALSEGGLTP---TLGLYRVIKRLV----------LVPVFVMIRVRAGFDFVFSQAE 80 (146)
Q Consensus 14 vcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTP---S~g~i~~~~~~~----------~ipv~vMIRP~R~gdF~Ys~~E 80 (146)
..|.|+..++.+++.|||.|=+= ..+.||-+. |+-++.++.+.+ ++||.. -|| .. +.
T Consensus 108 ~~v~s~~~A~~a~~~GaD~vVaq-G~EAGGH~G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViA-----AGG-I~-dg-- 177 (320)
T cd04743 108 LHVPSPGLLKQFLENGARKFIFE-GRECGGHVGPRSSFVLWESAIDALLAANGPDKAGKIHLLF-----AGG-IH-DE-- 177 (320)
T ss_pred EEeCCHHHHHHHHHcCCCEEEEe-cCcCcCCCCCCCchhhHHHHHHHHHHhhcccccCCccEEE-----EcC-CC-CH--
Confidence 56889999999999999998654 456777665 777777776544 577643 355 32 22
Q ss_pred HHHHHHHHHHHHHcCC--------CEEEEee---ecCCCC----cCHHHHHHHHHH
Q psy7930 81 KEIMALDCHQFVESGA--------DGFVIGA---LTGEQE----IDIEFIRQLKTI 121 (146)
Q Consensus 81 ~~~M~~dI~~~~~~Ga--------dG~VfG~---L~~dg~----iD~~~~~~Li~~ 121 (146)
+.+..+..+|| +|+.+|= ++++-. +....=++++++
T Consensus 178 -----r~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~Es~~~~~~~~~~k~~~l~a 228 (320)
T cd04743 178 -----RSAAMVSALAAPLAERGAKVGVLMGTAYLFTEEAVSAGAILPTFQDQAIAA 228 (320)
T ss_pred -----HHHHHHHHcCCcccccccccEEEEccHHhcchhhcCcccccHHHHHHHHhC
Confidence 55667778887 7999993 344443 666666667764
No 219
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=89.54 E-value=1.7 Score=41.13 Aligned_cols=79 Identities=28% Similarity=0.313 Sum_probs=52.6
Q ss_pred HHHHHHHHcCCCEEEecCC--------------C---CCCCC-----CCCHHHHHHHHhhCC--CcEEEEEccCCCCCcc
Q psy7930 20 ASALAAVRGGADRLELCAA--------------L---SEGGL-----TPTLGLYRVIKRLVL--VPVFVMIRVRAGFDFV 75 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~--------------l---~~GGl-----TPS~g~i~~~~~~~~--ipv~vMIRP~R~gdF~ 75 (146)
+.|..|.++|+|-|||..+ - .-||- --...+++.+++.++ .||.+=|+| .+|.
T Consensus 555 ~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~---~~~~ 631 (765)
T PRK08255 555 AAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISA---HDWV 631 (765)
T ss_pred HHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEcc---cccc
Confidence 6678899999999999653 0 11441 112367788888764 567655555 3454
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCEEEE
Q psy7930 76 FSQAEKEIMALDCHQFVESGADGFVI 101 (146)
Q Consensus 76 Ys~~E~~~M~~dI~~~~~~GadG~Vf 101 (146)
....+++.+.+=++.+.+.|+|-+-+
T Consensus 632 ~~g~~~~~~~~~~~~l~~~g~d~i~v 657 (765)
T PRK08255 632 EGGNTPDDAVEIARAFKAAGADLIDV 657 (765)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcEEEe
Confidence 44445556666677888899998877
No 220
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=89.53 E-value=6.3 Score=32.23 Aligned_cols=99 Identities=25% Similarity=0.298 Sum_probs=61.8
Q ss_pred ceeEEEecCHHHHHHHHH---cCCCEEEecCCCCCC-----C--C----CC--CHHHHHHHHhhCCCcEEEEEccCCCCC
Q psy7930 10 TTLEVCVDSVASALAAVR---GGADRLELCAALSEG-----G--L----TP--TLGLYRVIKRLVLVPVFVMIRVRAGFD 73 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~---~GAdRIELc~~l~~G-----G--l----TP--S~g~i~~~~~~~~ipv~vMIRP~R~gd 73 (146)
+.+-++-.+++....|.+ .+++-|||+-+=... | - .| ...+++.+++ .++||.|=||+ +
T Consensus 75 ~~vqi~g~~~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~--g-- 149 (233)
T cd02911 75 VGVNVRSSSLEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRA--G-- 149 (233)
T ss_pred EEEEecCCCHHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcC--C--
Confidence 466777788877654442 256999998753221 2 1 23 2455666665 58999999988 3
Q ss_pred cccCHHHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHH
Q psy7930 74 FVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLK 119 (146)
Q Consensus 74 F~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li 119 (146)
++ .+ ..+=.+.+.+.|+|++.+=.-.+.+.+|.+.++++.
T Consensus 150 --~~-~~---~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~ 189 (233)
T cd02911 150 --VD-VD---DEELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS 189 (233)
T ss_pred --cC-cC---HHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc
Confidence 22 22 222346677899998766433333478888877764
No 221
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=89.50 E-value=9.4 Score=30.45 Aligned_cols=104 Identities=16% Similarity=0.085 Sum_probs=67.7
Q ss_pred HHHHHHHHHcCCCEEEecCCCCC------CCCCC--CHHHHHHHHh---hCCCcEEEEEccCCCCCc--ccCHHHHHHHH
Q psy7930 19 VASALAAVRGGADRLELCAALSE------GGLTP--TLGLYRVIKR---LVLVPVFVMIRVRAGFDF--VFSQAEKEIMA 85 (146)
Q Consensus 19 ~~~a~~A~~~GAdRIELc~~l~~------GGlTP--S~g~i~~~~~---~~~ipv~vMIRP~R~gdF--~Ys~~E~~~M~ 85 (146)
.+.+..|.+.|+++|-+....+. -+.++ .+..+....+ ..++++.+-+=. -| .|+.+++..
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~----~~~~~~~~~~l~~-- 150 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLED----AFGCKTDPEYVLE-- 150 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe----ecCCCCCHHHHHH--
Confidence 88999999999999999865331 01222 2333333332 236776666643 13 377777654
Q ss_pred HHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC----CCCeEEee
Q psy7930 86 LDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG----DRPITFHR 131 (146)
Q Consensus 86 ~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~----~~~vtFHR 131 (146)
-++.+.++|++.|.+- +..|....+.+.++++..+ +.++-||-
T Consensus 151 -~~~~~~~~g~~~i~l~--Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~ 197 (265)
T cd03174 151 -VAKALEEAGADEISLK--DTVGLATPEEVAELVKALREALPDVPLGLHT 197 (265)
T ss_pred -HHHHHHHcCCCEEEec--hhcCCcCHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 4566778999988753 5567777778888877764 37788884
No 222
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=89.45 E-value=3.4 Score=35.79 Aligned_cols=85 Identities=22% Similarity=0.194 Sum_probs=53.7
Q ss_pred HHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE-
Q psy7930 22 ALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG- 98 (146)
Q Consensus 22 a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG- 98 (146)
+..+.+.||++|-||+ ..|.+||. ..+++.+++..++|+-+.--- .-| +.. .-...+.++||+-
T Consensus 148 ~~~~~~~Ga~~i~l~D--T~G~~~P~~v~~lv~~l~~~~~v~l~~H~HN-d~G--------lA~--ANalaA~~aGa~~v 214 (365)
T TIGR02660 148 AEVAAEAGADRFRFAD--TVGILDPFSTYELVRALRQAVDLPLEMHAHN-DLG--------MAT--ANTLAAVRAGATHV 214 (365)
T ss_pred HHHHHHcCcCEEEEcc--cCCCCCHHHHHHHHHHHHHhcCCeEEEEecC-CCC--------hHH--HHHHHHHHhCCCEE
Confidence 4567889999999999 47999994 678888888877777665444 222 222 3445556889863
Q ss_pred --EEEeeecCCCCcCHHHHHHHH
Q psy7930 99 --FVIGALTGEQEIDIEFIRQLK 119 (146)
Q Consensus 99 --~VfG~L~~dg~iD~~~~~~Li 119 (146)
=+.|.=..-|..+++.+-..+
T Consensus 215 d~tl~GiGeraGN~~lE~lv~~L 237 (365)
T TIGR02660 215 NTTVNGLGERAGNAALEEVAMAL 237 (365)
T ss_pred EEEeeccccccccCCHHHHHHHH
Confidence 344443333444444443333
No 223
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=89.45 E-value=3.5 Score=35.41 Aligned_cols=94 Identities=21% Similarity=0.290 Sum_probs=58.7
Q ss_pred cCHHHHHHHHHcCCCEEEecCCCCCCCCCC-CHHHHHHHHhhCC-CcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930 17 DSVASALAAVRGGADRLELCAALSEGGLTP-TLGLYRVIKRLVL-VPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES 94 (146)
Q Consensus 17 ~s~~~a~~A~~~GAdRIELc~~l~~GGlTP-S~g~i~~~~~~~~-ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~ 94 (146)
+..+.+....++|++-|++..+ .|-++ ....++.+++... +||.+ . .+-|.+ +.+.+.++
T Consensus 94 ~~~~~~~~l~eagv~~I~vd~~---~G~~~~~~~~i~~ik~~~p~v~Vi~---G-----~v~t~~-------~A~~l~~a 155 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDSA---HGHSVYVIEMIKFIKKKYPNVDVIA---G-----NVVTAE-------AARDLIDA 155 (325)
T ss_pred hHHHHHHHHHhcCCCEEEEECC---CCCcHHHHHHHHHHHHHCCCceEEE---C-----CCCCHH-------HHHHHHhc
Confidence 3457788888999999999753 23332 3567777777652 45433 2 444443 44556679
Q ss_pred CCCEEEEee------ecC----CCCcCHHHHHHHHHHhC--CCCeE
Q psy7930 95 GADGFVIGA------LTG----EQEIDIEFIRQLKTIIG--DRPIT 128 (146)
Q Consensus 95 GadG~VfG~------L~~----dg~iD~~~~~~Li~~a~--~~~vt 128 (146)
|+|++++|. .+. -|.-+...+.++.++++ +.|+.
T Consensus 156 GaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVI 201 (325)
T cd00381 156 GADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVI 201 (325)
T ss_pred CCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEE
Confidence 999999862 222 23345666777777665 35543
No 224
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=89.21 E-value=1.6 Score=33.71 Aligned_cols=75 Identities=24% Similarity=0.274 Sum_probs=43.2
Q ss_pred EEecCHHHHHHHHHcCCCEEEecCC-CCCCCCC--C-CHHHHHHHHhhCC-----CcEEEEEccCCCCCcccCHHHHHHH
Q psy7930 14 VCVDSVASALAAVRGGADRLELCAA-LSEGGLT--P-TLGLYRVIKRLVL-----VPVFVMIRVRAGFDFVFSQAEKEIM 84 (146)
Q Consensus 14 vcv~s~~~a~~A~~~GAdRIELc~~-l~~GGlT--P-S~g~i~~~~~~~~-----ipv~vMIRP~R~gdF~Ys~~E~~~M 84 (146)
+...+..+...+...++|.+-+-+- ...+|-+ | ....++++++..+ +||.+- || +.
T Consensus 111 ~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~-----GG--------I~-- 175 (210)
T TIGR01163 111 LNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVD-----GG--------VN-- 175 (210)
T ss_pred ECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEE-----CC--------cC--
Confidence 4455667777777788999765331 1222322 2 2234445554432 565332 22 11
Q ss_pred HHHHHHHHHcCCCEEEEee
Q psy7930 85 ALDCHQFVESGADGFVIGA 103 (146)
Q Consensus 85 ~~dI~~~~~~GadG~VfG~ 103 (146)
.++++.+.+.|+||+|+|-
T Consensus 176 ~env~~l~~~gad~iivgs 194 (210)
T TIGR01163 176 DDNARELAEAGADILVAGS 194 (210)
T ss_pred HHHHHHHHHcCCCEEEECh
Confidence 1568888899999999983
No 225
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=89.21 E-value=2.3 Score=38.00 Aligned_cols=74 Identities=26% Similarity=0.359 Sum_probs=52.9
Q ss_pred EecCHHHHHHHHHcCCCEEEecCCCCCC--CCC--------CCHHHHHHHHhh---CCCcEEEEEccCCCCCcccCHHHH
Q psy7930 15 CVDSVASALAAVRGGADRLELCAALSEG--GLT--------PTLGLYRVIKRL---VLVPVFVMIRVRAGFDFVFSQAEK 81 (146)
Q Consensus 15 cv~s~~~a~~A~~~GAdRIELc~~l~~G--GlT--------PS~g~i~~~~~~---~~ipv~vMIRP~R~gdF~Ys~~E~ 81 (146)
.+.|.+++..+.++|||-|=.. +..| .+| |....+.++.+. .++||. + .|+..|+
T Consensus 272 ~v~t~~~a~~l~~aGad~i~vg--~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpvi----a--dGGi~~~---- 339 (450)
T TIGR01302 272 NVATAEQAKALIDAGADGLRVG--IGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVI----A--DGGIRYS---- 339 (450)
T ss_pred eCCCHHHHHHHHHhCCCEEEEC--CCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEE----E--eCCCCCH----
Confidence 4788999999999999998763 1122 134 556666666543 467743 3 3446666
Q ss_pred HHHHHHHHHHHHcCCCEEEEeee
Q psy7930 82 EIMALDCHQFVESGADGFVIGAL 104 (146)
Q Consensus 82 ~~M~~dI~~~~~~GadG~VfG~L 104 (146)
.||..+.++||+.+.+|=+
T Consensus 340 ----~di~kAla~GA~~V~~G~~ 358 (450)
T TIGR01302 340 ----GDIVKALAAGADAVMLGSL 358 (450)
T ss_pred ----HHHHHHHHcCCCEEEECch
Confidence 7899999999999999955
No 226
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=89.11 E-value=3.7 Score=36.62 Aligned_cols=91 Identities=19% Similarity=0.254 Sum_probs=61.3
Q ss_pred cCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930 17 DSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG 95 (146)
Q Consensus 17 ~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G 95 (146)
.+..+.......|.|-|.|-.....|+.-|+..-++++++.. +++| .+= || +. .+++..+.++|
T Consensus 287 ~tp~e~i~~l~~~vD~Vllht~vdp~~~~~~~~kI~~ikk~~~~~~I--~Vd---GG--------I~--~eti~~l~~aG 351 (391)
T PRK13307 287 EDPVKLLESLKVKPDVVELHRGIDEEGTEHAWGNIKEIKKAGGKILV--AVA---GG--------VR--VENVEEALKAG 351 (391)
T ss_pred CCHHHHHHHhhCCCCEEEEccccCCCcccchHHHHHHHHHhCCCCcE--EEE---CC--------cC--HHHHHHHHHcC
Confidence 456566666688999999998888888788888888888752 3333 332 33 11 25588999999
Q ss_pred CCEEEEee-ecCCCCcCHHHHHHHHHHhC
Q psy7930 96 ADGFVIGA-LTGEQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 96 adG~VfG~-L~~dg~iD~~~~~~Li~~a~ 123 (146)
+|.||+|= ++.... =.++++++.+..+
T Consensus 352 ADivVVGsaIf~a~D-p~~aak~l~~~i~ 379 (391)
T PRK13307 352 ADILVVGRAITKSKD-VRRAAEDFLNKLK 379 (391)
T ss_pred CCEEEEeHHHhCCCC-HHHHHHHHHHhhc
Confidence 99999983 332211 2456666666554
No 227
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=89.02 E-value=1.7 Score=37.00 Aligned_cols=79 Identities=25% Similarity=0.252 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCCEEEecCCC---CCCCCCCC-------------------HHHHHHHHhhCCCcEEEEEccCCCCCcc-
Q psy7930 19 VASALAAVRGGADRLELCAAL---SEGGLTPT-------------------LGLYRVIKRLVLVPVFVMIRVRAGFDFV- 75 (146)
Q Consensus 19 ~~~a~~A~~~GAdRIELc~~l---~~GGlTPS-------------------~g~i~~~~~~~~ipv~vMIRP~R~gdF~- 75 (146)
.+.|..|.++|.|-|||..+- -.-=|+|. ...++++++.++-.+.|++|- ...+|.
T Consensus 152 ~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vri-s~~~~~~ 230 (338)
T cd04733 152 AHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKL-NSADFQR 230 (338)
T ss_pred HHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEE-cHHHcCC
Confidence 367888999999999997431 00003332 358888888875333345554 321111
Q ss_pred --cCHHHHHHHHHHHHHHHHcCCCEEEE
Q psy7930 76 --FSQAEKEIMALDCHQFVESGADGFVI 101 (146)
Q Consensus 76 --Ys~~E~~~M~~dI~~~~~~GadG~Vf 101 (146)
++.+ .+.+=++.+.++|+|-|-+
T Consensus 231 ~g~~~e---ea~~ia~~Le~~Gvd~iev 255 (338)
T cd04733 231 GGFTEE---DALEVVEALEEAGVDLVEL 255 (338)
T ss_pred CCCCHH---HHHHHHHHHHHcCCCEEEe
Confidence 3443 4555566777889987764
No 228
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=88.93 E-value=4.2 Score=29.83 Aligned_cols=80 Identities=26% Similarity=0.297 Sum_probs=47.5
Q ss_pred cceeEEEecCHHHHHH--HHHcCCCEEEecCCCCCCC-CCCCH---HHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHH
Q psy7930 9 KTTLEVCVDSVASALA--AVRGGADRLELCAALSEGG-LTPTL---GLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKE 82 (146)
Q Consensus 9 ~~~lEvcv~s~~~a~~--A~~~GAdRIELc~~l~~GG-lTPS~---g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~ 82 (146)
++.+-+.+....+... +.+.|+|-|-+......++ ..+.. ..++.+++..++||.+ - || .. +
T Consensus 114 ~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~---~--GG-i~-~----- 181 (200)
T cd04722 114 DVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIA---G--GG-IN-D----- 181 (200)
T ss_pred CceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEE---E--CC-CC-C-----
Confidence 3445555554444444 4888999998876544332 22222 4455555666788754 2 44 32 1
Q ss_pred HHHHHHHHHHHcCCCEEEEe
Q psy7930 83 IMALDCHQFVESGADGFVIG 102 (146)
Q Consensus 83 ~M~~dI~~~~~~GadG~VfG 102 (146)
-+++..+.+.|||+|++|
T Consensus 182 --~~~~~~~~~~Gad~v~vg 199 (200)
T cd04722 182 --PEDAAEALALGADGVIVG 199 (200)
T ss_pred --HHHHHHHHHhCCCEEEec
Confidence 256666777799999998
No 229
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=88.92 E-value=11 Score=31.81 Aligned_cols=103 Identities=12% Similarity=0.187 Sum_probs=78.5
Q ss_pred ecCHHHHHHHHHcCCCEEEecCCCCCCCCCC--CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHH---HHHHHHHH
Q psy7930 16 VDSVASALAAVRGGADRLELCAALSEGGLTP--TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKE---IMALDCHQ 90 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTP--S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~---~M~~dI~~ 90 (146)
+-|.+++....+.|++|+=+= +++ .+.+++++.+..+-.|.|=|=- |.|.=.-+...-. ...+.++.
T Consensus 84 IRs~~~v~~ll~~G~~rViiG-------t~av~~p~~v~~~~~~~g~rivv~lD~-r~g~vav~GW~e~s~~~~~~l~~~ 155 (241)
T COG0106 84 IRSLEDVEALLDAGVARVIIG-------TAAVKNPDLVKELCEEYGDRIVVALDA-RDGKVAVSGWQEDSGVELEELAKR 155 (241)
T ss_pred cCCHHHHHHHHHCCCCEEEEe-------cceecCHHHHHHHHHHcCCcEEEEEEc-cCCccccccccccccCCHHHHHHH
Confidence 468899999999999999874 333 5788898888888778888888 7653333222111 23566888
Q ss_pred HHHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCe
Q psy7930 91 FVESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPI 127 (146)
Q Consensus 91 ~~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~v 127 (146)
+.+.|+.+|++=-.+.||+ +|.+.+++|.++. ..|+
T Consensus 156 ~~~~g~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~-~ipv 194 (241)
T COG0106 156 LEEVGLAHILYTDISRDGTLSGPNVDLVKELAEAV-DIPV 194 (241)
T ss_pred HHhcCCCeEEEEecccccccCCCCHHHHHHHHHHh-CcCE
Confidence 9999999999999999996 7999999999887 3443
No 230
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=88.91 E-value=4.6 Score=32.24 Aligned_cols=95 Identities=19% Similarity=0.067 Sum_probs=57.3
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCCCHH---HHHHHHh---hCCCcEEEEEccCCCCCcc--cCHHHHHHHHHHHHHH
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTPTLG---LYRVIKR---LVLVPVFVMIRVRAGFDFV--FSQAEKEIMALDCHQF 91 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g---~i~~~~~---~~~ipv~vMIRP~R~gdF~--Ys~~E~~~M~~dI~~~ 91 (146)
.++..|.+.||+-+-+--+ .|.+. ... .++++++ ..++|+.+-..+ +|-..- .+.++++ +-.+.+
T Consensus 80 ~~v~~a~~~Ga~~v~~~~~--~~~~~-~~~~~~~i~~v~~~~~~~g~~~iie~~~-~g~~~~~~~~~~~i~---~~~~~a 152 (235)
T cd00958 80 ASVEDAVRLGADAVGVTVY--VGSEE-EREMLEELARVAAEAHKYGLPLIAWMYP-RGPAVKNEKDPDLIA---YAARIG 152 (235)
T ss_pred cCHHHHHHCCCCEEEEEEe--cCCch-HHHHHHHHHHHHHHHHHcCCCEEEEEec-cCCcccCccCHHHHH---HHHHHH
Confidence 4577899999998744332 33332 222 3333333 357898776666 543222 2333333 336668
Q ss_pred HHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCe
Q psy7930 92 VESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPI 127 (146)
Q Consensus 92 ~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~v 127 (146)
.++|+|-+-+.. +.|.+.++++++.. +.|+
T Consensus 153 ~~~GaD~Ik~~~-----~~~~~~~~~i~~~~-~~pv 182 (235)
T cd00958 153 AELGADIVKTKY-----TGDAESFKEVVEGC-PVPV 182 (235)
T ss_pred HHHCCCEEEecC-----CCCHHHHHHHHhcC-CCCE
Confidence 889999888752 34788899888755 4554
No 231
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=88.88 E-value=4.2 Score=31.88 Aligned_cols=91 Identities=23% Similarity=0.196 Sum_probs=57.1
Q ss_pred EEecCHHHH--HHHHHcCCCEEEecCCCCC---C--CCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930 14 VCVDSVASA--LAAVRGGADRLELCAALSE---G--GLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMAL 86 (146)
Q Consensus 14 vcv~s~~~a--~~A~~~GAdRIELc~~l~~---G--GlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~ 86 (146)
+.+.+..+. ..+...|||.+ |...-.- | |.+....+++.++ .++|+.+. || - |. +
T Consensus 103 i~~~~~~~~~~~~~~~~~aD~i-l~dt~~~~~~Gg~g~~~~~~~l~~~~--~~~Pvila-----GG-I--~~-------~ 164 (203)
T cd00405 103 IRVKDEEDLEKAAAYAGEVDAI-LLDSKSGGGGGGTGKTFDWSLLRGLA--SRKPVILA-----GG-L--TP-------D 164 (203)
T ss_pred EecCChhhHHHhhhccccCCEE-EEcCCCCCCCCCCcceEChHHhhccc--cCCCEEEE-----CC-C--Ch-------H
Confidence 344444333 35667899999 5554322 2 4555666776654 56787543 33 1 22 4
Q ss_pred HHHHHHHcC-CCEEEEe--eecCCCCcCHHHHHHHHHHh
Q psy7930 87 DCHQFVESG-ADGFVIG--ALTGEQEIDIEFIRQLKTII 122 (146)
Q Consensus 87 dI~~~~~~G-adG~VfG--~L~~dg~iD~~~~~~Li~~a 122 (146)
.+..+.+.| ++|+-++ +-+..|.-|.+.++++++.+
T Consensus 165 Nv~~~i~~~~~~gvdv~S~ie~~pg~kd~~ki~~~~~~~ 203 (203)
T cd00405 165 NVAEAIRLVRPYGVDVSSGVETSPGIKDPEKIRAFIEAA 203 (203)
T ss_pred HHHHHHHhcCCCEEEcCCcccCCCCCcCHHHHHHHHHhC
Confidence 566666777 9998764 34445999999999999863
No 232
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=88.84 E-value=6.2 Score=33.02 Aligned_cols=106 Identities=16% Similarity=0.109 Sum_probs=65.3
Q ss_pred ecCHHHHHHHHHcCCCEEEecCCCCC------CCCCCC------HHHHHHHHhhCCCcEEEEEc-----cCCCCCcccCH
Q psy7930 16 VDSVASALAAVRGGADRLELCAALSE------GGLTPT------LGLYRVIKRLVLVPVFVMIR-----VRAGFDFVFSQ 78 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~~l~~------GGlTPS------~g~i~~~~~~~~ipv~vMIR-----P~R~gdF~Ys~ 78 (146)
+.+..++..|.+.|++.|-+....+. =+.|+. ...++.+++ .+.-+.+-|- | -++ .++
T Consensus 73 ~~~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~-~G~~v~~~i~~~f~~~-~~~--~~~- 147 (274)
T cd07938 73 VPNLRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKA-AGLRVRGYVSTAFGCP-YEG--EVP- 147 (274)
T ss_pred CCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHH-CCCeEEEEEEeEecCC-CCC--CCC-
Confidence 36899999999999999999864432 133331 112333333 2444433222 3 222 123
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC----CCCeEEe
Q psy7930 79 AEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG----DRPITFH 130 (146)
Q Consensus 79 ~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~----~~~vtFH 130 (146)
.+.+.+=++.+.++|+|.|.+ -+.-|......+.++++..+ +.++-||
T Consensus 148 --~~~~~~~~~~~~~~Ga~~i~l--~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H 199 (274)
T cd07938 148 --PERVAEVAERLLDLGCDEISL--GDTIGVATPAQVRRLLEAVLERFPDEKLALH 199 (274)
T ss_pred --HHHHHHHHHHHHHcCCCEEEE--CCCCCccCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 445555666777899997554 46678888888888887764 3677777
No 233
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=88.78 E-value=1.9 Score=36.75 Aligned_cols=69 Identities=26% Similarity=0.193 Sum_probs=54.0
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEE
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGF 99 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~ 99 (146)
.-++.|.+-|||-|--. .|=+...++.+.+.+.+||.+ +||.=.=++.|+.+|..++-.. ||.|+
T Consensus 170 ~aaRlaaelGADIiK~~-------ytg~~e~F~~vv~~~~vpVvi-----aGG~k~~~~~~~l~~~~~ai~a---Ga~G~ 234 (265)
T COG1830 170 YAARLAAELGADIIKTK-------YTGDPESFRRVVAACGVPVVI-----AGGPKTETEREFLEMVTAAIEA---GAMGV 234 (265)
T ss_pred HHHHHHHHhcCCeEeec-------CCCChHHHHHHHHhCCCCEEE-----eCCCCCCChHHHHHHHHHHHHc---cCcch
Confidence 34568889999988754 455668999999999888854 5665556899999999886544 99999
Q ss_pred EEee
Q psy7930 100 VIGA 103 (146)
Q Consensus 100 VfG~ 103 (146)
++|=
T Consensus 235 ~~GR 238 (265)
T COG1830 235 AVGR 238 (265)
T ss_pred hhhh
Confidence 9994
No 234
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=88.78 E-value=2 Score=37.86 Aligned_cols=73 Identities=22% Similarity=0.266 Sum_probs=48.2
Q ss_pred ecCHHHHHHHHHcCCCEEEecCCCCCCC--CC--------CCHHHHHHHHhh-------C---CCcEEEEEccCCCCCcc
Q psy7930 16 VDSVASALAAVRGGADRLELCAALSEGG--LT--------PTLGLYRVIKRL-------V---LVPVFVMIRVRAGFDFV 75 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~~l~~GG--lT--------PS~g~i~~~~~~-------~---~ipv~vMIRP~R~gdF~ 75 (146)
+.|.++++.+.+.|||-| ... ...|. +| |-...+..+.+. . ++||.. .|++.
T Consensus 195 V~t~e~A~~l~~aGAD~V-~VG-~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIA------dGGI~ 266 (368)
T PRK08649 195 CVTYTTALHLMRTGAAGV-LVG-IGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIA------DGGIG 266 (368)
T ss_pred CCCHHHHHHHHHcCCCEE-EEC-CCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEE------eCCCC
Confidence 688999999999999999 333 22221 22 333333333221 1 466532 46688
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCEEEEeee
Q psy7930 76 FSQAEKEIMALDCHQFVESGADGFVIGAL 104 (146)
Q Consensus 76 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L 104 (146)
|+ .||..+..+|||++.+|-+
T Consensus 267 ~~--------~diakAlalGAd~Vm~Gs~ 287 (368)
T PRK08649 267 TS--------GDIAKAIACGADAVMLGSP 287 (368)
T ss_pred CH--------HHHHHHHHcCCCeecccch
Confidence 87 7899999999999999954
No 235
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=88.77 E-value=0.81 Score=42.56 Aligned_cols=47 Identities=23% Similarity=0.261 Sum_probs=38.9
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhCCCcEEEEEcc
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLVLVPVFVMIRV 68 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~~ipv~vMIRP 68 (146)
+-+..+.+.|||+|-||+ ..|.+||. +.+++.+++.+++||++.---
T Consensus 153 ~~~~~~~~~Gad~I~i~D--t~G~~~P~~v~~lv~~lk~~~~~pi~~H~Hn 201 (582)
T TIGR01108 153 DLAEELLEMGVDSICIKD--MAGILTPKAAYELVSALKKRFGLPVHLHSHA 201 (582)
T ss_pred HHHHHHHHcCCCEEEECC--CCCCcCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 346778899999999999 47999995 778999998888898876554
No 236
>PRK07094 biotin synthase; Provisional
Probab=88.77 E-value=9.7 Score=31.82 Aligned_cols=93 Identities=17% Similarity=0.128 Sum_probs=53.4
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCCC--HH----HHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHH
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTPT--LG----LYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVE 93 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS--~g----~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~ 93 (146)
+.+..+.+.|++++-|. ||..|. .. +++.+++..++++. +.+ |. -+ .+.++.+++
T Consensus 77 ~~~~~~~~~g~~~i~l~-----gG~~~~~~~~~l~~l~~~i~~~~~l~i~--~~~---g~--~~-------~e~l~~Lk~ 137 (323)
T PRK07094 77 ECAKKAYELGYRTIVLQ-----SGEDPYYTDEKIADIIKEIKKELDVAIT--LSL---GE--RS-------YEEYKAWKE 137 (323)
T ss_pred HHHHHHHHCCCCEEEEe-----cCCCCCCCHHHHHHHHHHHHccCCceEE--Eec---CC--CC-------HHHHHHHHH
Confidence 34555677899999886 555554 22 44444443344443 334 21 12 356778889
Q ss_pred cCCCEEEEeeecCC--------CCcCHHHHHHHHHHhC--CCCeEEee
Q psy7930 94 SGADGFVIGALTGE--------QEIDIEFIRQLKTIIG--DRPITFHR 131 (146)
Q Consensus 94 ~GadG~VfG~L~~d--------g~iD~~~~~~Li~~a~--~~~vtFHR 131 (146)
+|++.+-+|+=+.+ ...+.+...+.++.++ |+++..|-
T Consensus 138 aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~ 185 (323)
T PRK07094 138 AGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGF 185 (323)
T ss_pred cCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceE
Confidence 99999999875543 2345555555555554 45544443
No 237
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=88.57 E-value=3.7 Score=32.64 Aligned_cols=108 Identities=17% Similarity=0.145 Sum_probs=63.7
Q ss_pred EecCHHHHHHHHH----cCCCEEEecCCCCC------CCCCCC--HHHHHHHHhh---CCCcEEEEEccCCCCCcccCHH
Q psy7930 15 CVDSVASALAAVR----GGADRLELCAALSE------GGLTPT--LGLYRVIKRL---VLVPVFVMIRVRAGFDFVFSQA 79 (146)
Q Consensus 15 cv~s~~~a~~A~~----~GAdRIELc~~l~~------GGlTPS--~g~i~~~~~~---~~ipv~vMIRP~R~gdF~Ys~~ 79 (146)
|--..++...+.+ .|++++.++...+. =+.|+. ...+..+.+. .+..+ -+-+ ...+.|+++
T Consensus 62 ~~~~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v--~~~~--~~~~~~~~~ 137 (237)
T PF00682_consen 62 CRANEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV--AFGC--EDASRTDPE 137 (237)
T ss_dssp EESCHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE--EEEE--TTTGGSSHH
T ss_pred eeehHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce--EeCc--cccccccHH
Confidence 3344555555444 99999999975432 112211 2222222221 24444 4444 334678887
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC---C-CCeEEee
Q psy7930 80 EKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG---D-RPITFHR 131 (146)
Q Consensus 80 E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~---~-~~vtFHR 131 (146)
++..+ ++.+.++|+|.|.+ -+..|....+.+.++++..+ + .++-||-
T Consensus 138 ~~~~~---~~~~~~~g~~~i~l--~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~ 188 (237)
T PF00682_consen 138 ELLEL---AEALAEAGADIIYL--ADTVGIMTPEDVAELVRALREALPDIPLGFHA 188 (237)
T ss_dssp HHHHH---HHHHHHHT-SEEEE--EETTS-S-HHHHHHHHHHHHHHSTTSEEEEEE
T ss_pred HHHHH---HHHHHHcCCeEEEe--eCccCCcCHHHHHHHHHHHHHhccCCeEEEEe
Confidence 77665 56667779999754 47788888889988888775 3 7888884
No 238
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=88.38 E-value=2.3 Score=38.66 Aligned_cols=79 Identities=18% Similarity=0.232 Sum_probs=57.0
Q ss_pred eEEEe---cCHHHHHHHHHcCCCEEE-------ecC-CCCCCCCCCCHHHHHHHHh---hCCCcEEEEEccCCCCCcccC
Q psy7930 12 LEVCV---DSVASALAAVRGGADRLE-------LCA-ALSEGGLTPTLGLYRVIKR---LVLVPVFVMIRVRAGFDFVFS 77 (146)
Q Consensus 12 lEvcv---~s~~~a~~A~~~GAdRIE-------Lc~-~l~~GGlTPS~g~i~~~~~---~~~ipv~vMIRP~R~gdF~Ys 77 (146)
++|.+ .+.+.+..+.++|||-|- .|. ....|-..|-+..+.++.+ ..++||. -.|+-.|+
T Consensus 269 ~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~vi------a~ggi~~~ 342 (479)
T PRK07807 269 VPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVW------ADGGVRHP 342 (479)
T ss_pred CeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEE------ecCCCCCH
Confidence 55555 677999999999999997 343 2223333477777777776 3467764 24557777
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeee
Q psy7930 78 QAEKEIMALDCHQFVESGADGFVIGAL 104 (146)
Q Consensus 78 ~~E~~~M~~dI~~~~~~GadG~VfG~L 104 (146)
.|+..+..+||+.+++|-+
T Consensus 343 --------~~~~~al~~ga~~v~~g~~ 361 (479)
T PRK07807 343 --------RDVALALAAGASNVMIGSW 361 (479)
T ss_pred --------HHHHHHHHcCCCeeeccHh
Confidence 7889999999999999965
No 239
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=88.35 E-value=3 Score=35.87 Aligned_cols=66 Identities=23% Similarity=0.192 Sum_probs=43.3
Q ss_pred cCCCEEEecC-CCCC-CC---CCC--CHHHHHHHHhhCC-----CcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930 28 GGADRLELCA-ALSE-GG---LTP--TLGLYRVIKRLVL-----VPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG 95 (146)
Q Consensus 28 ~GAdRIELc~-~l~~-GG---lTP--S~g~i~~~~~~~~-----ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G 95 (146)
.+||-|||+- .... |+ -.| -..+++.+++.++ +||.|=|+| . .+.+|+. +=++.+.+.|
T Consensus 168 ~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp-~-----~~~~~~~---~ia~~l~~~G 238 (344)
T PRK05286 168 PYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAP-D-----LSDEELD---DIADLALEHG 238 (344)
T ss_pred hhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCC-C-----CCHHHHH---HHHHHHHHhC
Confidence 3599999973 2212 21 122 2457777777776 999999998 3 3444543 4455678899
Q ss_pred CCEEEEe
Q psy7930 96 ADGFVIG 102 (146)
Q Consensus 96 adG~VfG 102 (146)
+||+++-
T Consensus 239 adgi~~~ 245 (344)
T PRK05286 239 IDGVIAT 245 (344)
T ss_pred CcEEEEe
Confidence 9999985
No 240
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=88.34 E-value=3.4 Score=35.07 Aligned_cols=86 Identities=17% Similarity=0.240 Sum_probs=54.9
Q ss_pred HHHHHH-cCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEE-------EEEccCCCCCccc---CHHHHHHHHHHHHH
Q psy7930 22 ALAAVR-GGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVF-------VMIRVRAGFDFVF---SQAEKEIMALDCHQ 90 (146)
Q Consensus 22 a~~A~~-~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~-------vMIRP~R~gdF~Y---s~~E~~~M~~dI~~ 90 (146)
+....+ +||+=|-|= || .--...++.+ ...+|||. .-+|- -|+|.- ++++.+.+.+|.+.
T Consensus 98 a~rl~~eaGa~aVkiE-----gg-~~~~~~i~~l-~~~gIpV~gHiGltPq~a~~--~ggy~~qgrt~~~a~~~i~~A~a 168 (263)
T TIGR00222 98 AARVMQETGANAVKLE-----GG-EWLVETVQML-TERGVPVVGHLGLTPQSVNI--LGGYKVQGKDEEAAKKLLEDALA 168 (263)
T ss_pred HHHHHHHhCCeEEEEc-----Cc-HhHHHHHHHH-HHCCCCEEEecCCCceeEee--cCCeeecCCCHHHHHHHHHHHHH
Confidence 333344 899888764 44 1122334322 23578875 22454 455654 57889999999999
Q ss_pred HHHcCCCEEEEeeecCCCCcCHHHHHHHHHHh
Q psy7930 91 FVESGADGFVIGALTGEQEIDIEFIRQLKTII 122 (146)
Q Consensus 91 ~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a 122 (146)
+.++||+++|+=++.+ +..+++.+..
T Consensus 169 ~e~AGA~~ivlE~vp~------~~a~~It~~l 194 (263)
T TIGR00222 169 LEEAGAQLLVLECVPV------ELAAKITEAL 194 (263)
T ss_pred HHHcCCCEEEEcCCcH------HHHHHHHHhC
Confidence 9999999999977652 4555555544
No 241
>PLN02705 beta-amylase
Probab=88.29 E-value=1.7 Score=41.19 Aligned_cols=72 Identities=26% Similarity=0.373 Sum_probs=52.9
Q ss_pred CCcEEEEEccCCCCCcccC---HHHHHHHHHHHHHHHHcCCCEEEE----eeecC--CCCcCHHHHHHHHHHhC--CCCe
Q psy7930 59 LVPVFVMIRVRAGFDFVFS---QAEKEIMALDCHQFVESGADGFVI----GALTG--EQEIDIEFIRQLKTIIG--DRPI 127 (146)
Q Consensus 59 ~ipv~vMIRP~R~gdF~Ys---~~E~~~M~~dI~~~~~~GadG~Vf----G~L~~--dg~iD~~~~~~Li~~a~--~~~v 127 (146)
.+||+||.=- |-+-+ =..-+.|..+++.+|++|+|||.+ |+.-. .++.|...=++|.+.++ ++++
T Consensus 246 ~VpVyVMLPL----d~V~~~~~l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKl 321 (681)
T PLN02705 246 YVPVYVMLAV----GIINNFCQLVDPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSGYRELFNIIREFKLKL 321 (681)
T ss_pred ceeEEEEeec----ceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHHHHHHHHHHHHcCCeE
Confidence 3999999854 12211 124578899999999999999987 66664 67899999999999997 5554
Q ss_pred EEeeccc
Q psy7930 128 TFHRAFD 134 (146)
Q Consensus 128 tFHRAFD 134 (146)
.-=+.|-
T Consensus 322 qvVmSFH 328 (681)
T PLN02705 322 QVVMAFH 328 (681)
T ss_pred EEEEEee
Confidence 4334444
No 242
>PLN02334 ribulose-phosphate 3-epimerase
Probab=88.22 E-value=4.5 Score=32.51 Aligned_cols=93 Identities=20% Similarity=0.262 Sum_probs=50.7
Q ss_pred ceeEEEec--CHHHHHHHH-HcC-CCEEEecC-CCCCCCC-CC--CHHHHHHHHhh-CCCcEEEE--EccCCCCCcccCH
Q psy7930 10 TTLEVCVD--SVASALAAV-RGG-ADRLELCA-ALSEGGL-TP--TLGLYRVIKRL-VLVPVFVM--IRVRAGFDFVFSQ 78 (146)
Q Consensus 10 ~~lEvcv~--s~~~a~~A~-~~G-AdRIELc~-~l~~GGl-TP--S~g~i~~~~~~-~~ipv~vM--IRP~R~gdF~Ys~ 78 (146)
.++-+.+. +..+...+. +.| +|.|=+-. .-..+|- .| ....++++++. .++||.+- |++
T Consensus 116 ~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a~GGI~~---------- 185 (229)
T PLN02334 116 MKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEVDGGVGP---------- 185 (229)
T ss_pred CeEEEEECCCCCHHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCCcEEEeCCCCH----------
Confidence 34455553 444444444 443 99985532 1122232 22 23456666665 35676653 344
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEee-ecCCCCcC-HHHHHHHHHH
Q psy7930 79 AEKEIMALDCHQFVESGADGFVIGA-LTGEQEID-IEFIRQLKTI 121 (146)
Q Consensus 79 ~E~~~M~~dI~~~~~~GadG~VfG~-L~~dg~iD-~~~~~~Li~~ 121 (146)
+.+..+.+.|+||||+|- +...- | .++++++.+.
T Consensus 186 -------e~i~~l~~aGad~vvvgsai~~~~--d~~~~~~~l~~~ 221 (229)
T PLN02334 186 -------STIDKAAEAGANVIVAGSAVFGAP--DYAEVISGLRAS 221 (229)
T ss_pred -------HHHHHHHHcCCCEEEEChHHhCCC--CHHHHHHHHHHH
Confidence 488999999999999983 33221 3 3445555543
No 243
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=88.21 E-value=6.6 Score=33.48 Aligned_cols=103 Identities=18% Similarity=0.260 Sum_probs=71.7
Q ss_pred CHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhh------CCCcEEEEEccCCCC--Cc-----ccCHHHHHHH
Q psy7930 18 SVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRL------VLVPVFVMIRVRAGF--DF-----VFSQAEKEIM 84 (146)
Q Consensus 18 s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~------~~ipv~vMIRP~R~g--dF-----~Ys~~E~~~M 84 (146)
+++.+..|.++|.+-|=+=.. --|.-..++.+++. .++|+-.-|-- -+| |. +|++-
T Consensus 88 ~~~~i~~ai~~GftSVm~d~S-----~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~-i~g~ed~~~g~s~~t~p----- 156 (293)
T PRK07315 88 HYEDALECIEVGYTSIMFDGS-----HLPVEENLKLAKEVVEKAHAKGISVEAEVGT-IGGEEDGIIGKGELAPI----- 156 (293)
T ss_pred CHHHHHHHHHcCCCEEEEcCC-----CCCHHHHHHHHHHHHHHHHHcCCEEEEecCc-ccCcCccccCccCCCCH-----
Confidence 688999999999988887642 34666666666653 37888777765 443 21 23322
Q ss_pred HHHHHHHHHcCCCEEEEe--ee-----cCCCCcCHHHHHHHHHHhCCCCeEEeec
Q psy7930 85 ALDCHQFVESGADGFVIG--AL-----TGEQEIDIEFIRQLKTIIGDRPITFHRA 132 (146)
Q Consensus 85 ~~dI~~~~~~GadG~VfG--~L-----~~dg~iD~~~~~~Li~~a~~~~vtFHRA 132 (146)
++...+.+.|+|-+.+| -. ++.-.||.+.++++.+...+.|+++|=.
T Consensus 157 -eea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGG 210 (293)
T PRK07315 157 -EDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGG 210 (293)
T ss_pred -HHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECC
Confidence 22344557899988888 33 3223699999999999987799999965
No 244
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=88.13 E-value=1.8 Score=37.65 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=46.9
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCEEEEeeecCC-CCcCHHHHHHHHHHhC--CCCeEEeeccc
Q psy7930 76 FSQAEKEIMALDCHQFVESGADGFVIGALTGE-QEIDIEFIRQLKTIIG--DRPITFHRAFD 134 (146)
Q Consensus 76 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~d-g~iD~~~~~~Li~~a~--~~~vtFHRAFD 134 (146)
.++.|++.|.+-++.+.+.||.||-+|..-.. -..|.+.+.++.+.|+ +.++.+|=-.+
T Consensus 161 ~~~~~~~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~ 222 (415)
T cd01297 161 ATEEELAKMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYE 222 (415)
T ss_pred CCHHHHHHHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECcc
Confidence 46789999999999999999999998853222 2578999999998887 67788886544
No 245
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=88.11 E-value=9.2 Score=34.85 Aligned_cols=100 Identities=16% Similarity=0.093 Sum_probs=61.8
Q ss_pred HHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEE
Q psy7930 22 ALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVI 101 (146)
Q Consensus 22 a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~Vf 101 (146)
+..|.++|.|.+-++..++. +--....++.+++ .+..+.+-|-= -.+ -.|+.+- ..+-++.+.++|+|.|.+
T Consensus 101 v~~A~~~Gvd~irif~~lnd--~~n~~~~i~~ak~-~G~~v~~~i~~-t~~-p~~t~e~---~~~~a~~l~~~Gad~I~i 172 (467)
T PRK14041 101 VKKVAEYGLDIIRIFDALND--IRNLEKSIEVAKK-HGAHVQGAISY-TVS-PVHTLEY---YLEFARELVDMGVDSICI 172 (467)
T ss_pred HHHHHHCCcCEEEEEEeCCH--HHHHHHHHHHHHH-CCCEEEEEEEe-ccC-CCCCHHH---HHHHHHHHHHcCCCEEEE
Confidence 67889999999999976654 1001112222222 34555544432 111 1445444 444455677889997665
Q ss_pred eeecCCCCcCHHHHHHHHHHhC---CCCeEEee
Q psy7930 102 GALTGEQEIDIEFIRQLKTIIG---DRPITFHR 131 (146)
Q Consensus 102 G~L~~dg~iD~~~~~~Li~~a~---~~~vtFHR 131 (146)
. +.-|......+.+|+.+.+ ++++-||-
T Consensus 173 ~--Dt~G~l~P~~v~~Lv~~lk~~~~vpI~~H~ 203 (467)
T PRK14041 173 K--DMAGLLTPKRAYELVKALKKKFGVPVEVHS 203 (467)
T ss_pred C--CccCCcCHHHHHHHHHHHHHhcCCceEEEe
Confidence 3 6678888889999988875 57788884
No 246
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=88.09 E-value=13 Score=30.20 Aligned_cols=109 Identities=12% Similarity=-0.010 Sum_probs=63.0
Q ss_pred HHHHHHHcCCCEEEecCCCCCCCCCC--CHHHHHHHHhhC----CCcEEEEEccCCCCCcccC-----HHHHHHHHHHHH
Q psy7930 21 SALAAVRGGADRLELCAALSEGGLTP--TLGLYRVIKRLV----LVPVFVMIRVRAGFDFVFS-----QAEKEIMALDCH 89 (146)
Q Consensus 21 ~a~~A~~~GAdRIELc~~l~~GGlTP--S~g~i~~~~~~~----~ipv~vMIRP~R~gdF~Ys-----~~E~~~M~~dI~ 89 (146)
....|.+.|.+-|||--.-..+-..| |...++++++.+ ++.+. +..| -..+|.-. ..-++.+++-|+
T Consensus 15 ~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~-~~~~-~~~~~~~~~~~~r~~~~~~~~~~i~ 92 (279)
T cd00019 15 ALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLS-VHAP-YLINLASPDKEKREKSIERLKDEIE 92 (279)
T ss_pred HHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEE-EEcC-ceeccCCCCHHHHHHHHHHHHHHHH
Confidence 44568899999999853211111111 345555555433 33433 3345 33444322 335778899999
Q ss_pred HHHHcCCCEEEEeeecCCC-C------cCHHHHHHHHHHhC--CCCeEEee
Q psy7930 90 QFVESGADGFVIGALTGEQ-E------IDIEFIRQLKTIIG--DRPITFHR 131 (146)
Q Consensus 90 ~~~~~GadG~VfG~L~~dg-~------iD~~~~~~Li~~a~--~~~vtFHR 131 (146)
.++++|++-+|+-.-...+ . .=.+.+++|.+.|+ ++.+.++-
T Consensus 93 ~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn 143 (279)
T cd00019 93 RCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALET 143 (279)
T ss_pred HHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 9999999998883222211 1 11356777788765 55666554
No 247
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=88.06 E-value=2.1 Score=34.99 Aligned_cols=85 Identities=25% Similarity=0.237 Sum_probs=57.0
Q ss_pred HHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEE
Q psy7930 22 ALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVI 101 (146)
Q Consensus 22 a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~Vf 101 (146)
|++|+.+||.-|-.+ +..-++++++.+++||.=+|.-..+++=+| +.--.+|++.+.+.|+|=+-+
T Consensus 5 A~Aa~~gGA~giR~~----------~~~dI~aik~~v~lPIIGi~K~~y~~~~V~----ITPT~~ev~~l~~aGadIIAl 70 (192)
T PF04131_consen 5 AKAAEEGGAVGIRAN----------GVEDIRAIKKAVDLPIIGIIKRDYPDSDVY----ITPTLKEVDALAEAGADIIAL 70 (192)
T ss_dssp HHHHHHCT-SEEEEE----------SHHHHHHHHTTB-S-EEEE-B-SBTTSS------BS-SHHHHHHHHHCT-SEEEE
T ss_pred HHHHHHCCceEEEcC----------CHHHHHHHHHhcCCCEEEEEeccCCCCCeE----ECCCHHHHHHHHHcCCCEEEE
Confidence 788999999988877 578999999999999999995313343344 233457888999999999988
Q ss_pred eeecCCCCcCHHHHHHHHHHhC
Q psy7930 102 GALTGEQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 102 G~L~~dg~iD~~~~~~Li~~a~ 123 (146)
=+=+.... +.+.+|+...+
T Consensus 71 DaT~R~Rp---~~l~~li~~i~ 89 (192)
T PF04131_consen 71 DATDRPRP---ETLEELIREIK 89 (192)
T ss_dssp E-SSSS-S---S-HHHHHHHHH
T ss_pred ecCCCCCC---cCHHHHHHHHH
Confidence 87555544 77788888776
No 248
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=88.06 E-value=1.9 Score=36.10 Aligned_cols=83 Identities=18% Similarity=0.186 Sum_probs=55.7
Q ss_pred ceeEEEecCHHHHHHHHHcCCCEEEec-CCCCCCCCC---CCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHH
Q psy7930 10 TTLEVCVDSVASALAAVRGGADRLELC-AALSEGGLT---PTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMA 85 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~~GAdRIELc-~~l~~GGlT---PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~ 85 (146)
.++=.=|.|+++++.|.+.|+|-|=-- +.+..-+-+ |-+.+++++.+ .+.+| |- .|.|...
T Consensus 128 ~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~-~~~~v--IA----EGr~~tP-------- 192 (229)
T COG3010 128 QLAMADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD-AGCRV--IA----EGRYNTP-------- 192 (229)
T ss_pred cEEEeccCCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHh-CCCeE--Ee----eCCCCCH--------
Confidence 445556789999999999999998644 333332334 45777777766 55555 32 4555544
Q ss_pred HHHHHHHHcCCCEEEEe-eecCC
Q psy7930 86 LDCHQFVESGADGFVIG-ALTGE 107 (146)
Q Consensus 86 ~dI~~~~~~GadG~VfG-~L~~d 107 (146)
+..+.+.++||+++|+| ++|.=
T Consensus 193 ~~Ak~a~~~Ga~aVvVGsAITRp 215 (229)
T COG3010 193 EQAKKAIEIGADAVVVGSAITRP 215 (229)
T ss_pred HHHHHHHHhCCeEEEECcccCCH
Confidence 34567788999999997 55543
No 249
>PLN02334 ribulose-phosphate 3-epimerase
Probab=87.93 E-value=4.1 Score=32.76 Aligned_cols=46 Identities=22% Similarity=0.459 Sum_probs=34.4
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCCCH----HHHHHHHhhCCCc--EEEEEc
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTPTL----GLYRVIKRLVLVP--VFVMIR 67 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~----g~i~~~~~~~~ip--v~vMIR 67 (146)
+.+..+.++|++.|-| ...-|-..|.. .+++.+++..+.| ++.||.
T Consensus 24 ~~l~~~~~~g~~~ihl--d~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~ 75 (229)
T PLN02334 24 EEAKRVLDAGADWLHV--DVMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVT 75 (229)
T ss_pred HHHHHHHHcCCCEEEE--ecccCCcCCccccCHHHHHHHHhcCCCcEEEEeccC
Confidence 4678889999999999 34456566654 4788888877655 788884
No 250
>PRK09061 D-glutamate deacylase; Validated
Probab=87.87 E-value=1.8 Score=39.18 Aligned_cols=58 Identities=19% Similarity=0.086 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC--CCCeEEeecccC
Q psy7930 77 SQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG--DRPITFHRAFDV 135 (146)
Q Consensus 77 s~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~vtFHRAFD~ 135 (146)
|.+|++.|.+-++.+.+.||.||-.| +.....++.+.+.++.+.|+ +.++++|---..
T Consensus 164 t~~el~~m~~ll~~al~~Ga~gis~~-~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~ 223 (509)
T PRK09061 164 TPAELAEILELLEQGLDEGALGIGIG-AGYAPGTGHKEYLELARLAARAGVPTYTHVRYLS 223 (509)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEecC-CccCCCCCHHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 47899999999999999999999876 33333579999999999887 688888875543
No 251
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=87.86 E-value=5.1 Score=34.05 Aligned_cols=77 Identities=30% Similarity=0.331 Sum_probs=48.1
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCC-----CCC-----------C--------HHHHHHHHhhC--CCcEEEEEccCCCCC
Q psy7930 20 ASALAAVRGGADRLELCAALSEGG-----LTP-----------T--------LGLYRVIKRLV--LVPVFVMIRVRAGFD 73 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GG-----lTP-----------S--------~g~i~~~~~~~--~ipv~vMIRP~R~gd 73 (146)
+.|..|.++|.|-|||..+ .|. |+| | ...++.+++.+ ++||.+=|+| .+
T Consensus 158 ~aA~~a~~aGfDgVei~~~--~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~---~~ 232 (336)
T cd02932 158 AAARRAVEAGFDVIEIHAA--HGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISA---TD 232 (336)
T ss_pred HHHHHHHHcCCCEEEEccc--cccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcc---cc
Confidence 6778899999999999742 111 122 1 57888888888 4565444444 22
Q ss_pred cccCHHHHHHHHHHHHHHHHcCCCEEEE
Q psy7930 74 FVFSQAEKEIMALDCHQFVESGADGFVI 101 (146)
Q Consensus 74 F~Ys~~E~~~M~~dI~~~~~~GadG~Vf 101 (146)
|.-...+.+.+.+=++.+.+.|+|-|-+
T Consensus 233 ~~~~g~~~~e~~~ia~~Le~~gvd~iev 260 (336)
T cd02932 233 WVEGGWDLEDSVELAKALKELGVDLIDV 260 (336)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 2222222444555566677889987765
No 252
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=87.80 E-value=3.9 Score=33.68 Aligned_cols=77 Identities=27% Similarity=0.308 Sum_probs=50.9
Q ss_pred HHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEE
Q psy7930 21 SALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGF 99 (146)
Q Consensus 21 ~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~ 99 (146)
-|++|+.-|-+=+=| +-.|..+...+++++++.+ ++|+.+ ||+-. |. ++++.+.++|||+|
T Consensus 140 yA~aae~~g~~ivyL----e~SG~~~~~e~I~~v~~~~~~~pl~v------GGGIr-s~-------e~a~~l~~aGAD~V 201 (219)
T cd02812 140 YALAAEYLGMPIVYL----EYSGAYGPPEVVRAVKKVLGDTPLIV------GGGIR-SG-------EQAKEMAEAGADTI 201 (219)
T ss_pred HHHHHHHcCCeEEEe----CCCCCcCCHHHHHHHHHhcCCCCEEE------eCCCC-CH-------HHHHHHHHcCCCEE
Confidence 356677888332222 2346668999999999998 889865 33322 32 45677888999999
Q ss_pred EEeeecCCCCcCHHHHHHH
Q psy7930 100 VIGALTGEQEIDIEFIRQL 118 (146)
Q Consensus 100 VfG~L~~dg~iD~~~~~~L 118 (146)
|+|=.-.+ |.+.++++
T Consensus 202 VVGsai~~---~p~~~~~~ 217 (219)
T cd02812 202 VVGNIVEE---DPNAALET 217 (219)
T ss_pred EECchhhC---CHHHHHHH
Confidence 99965443 24554444
No 253
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=87.74 E-value=3.2 Score=34.48 Aligned_cols=68 Identities=22% Similarity=0.304 Sum_probs=39.8
Q ss_pred HHHHHHHcCCCEEEecCCCCCCCCC-----CCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930 21 SALAAVRGGADRLELCAALSEGGLT-----PTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG 95 (146)
Q Consensus 21 ~a~~A~~~GAdRIELc~~l~~GGlT-----PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G 95 (146)
.+....+....-|-+.+.....|.+ +....++.+++..+.||.| +|-.+. .++++.+.++|
T Consensus 155 ri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~v--------gfGI~~------~e~~~~~~~~G 220 (256)
T TIGR00262 155 RLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLV--------GFGISK------PEQVKQAIDAG 220 (256)
T ss_pred HHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEE--------eCCCCC------HHHHHHHHHcC
Confidence 3333333333356555544445543 2356777777776777533 233331 14677789999
Q ss_pred CCEEEEe
Q psy7930 96 ADGFVIG 102 (146)
Q Consensus 96 adG~VfG 102 (146)
|||+|+|
T Consensus 221 ADgvVvG 227 (256)
T TIGR00262 221 ADGVIVG 227 (256)
T ss_pred CCEEEEC
Confidence 9999999
No 254
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=87.71 E-value=15 Score=30.59 Aligned_cols=104 Identities=16% Similarity=0.089 Sum_probs=64.0
Q ss_pred CHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930 18 SVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD 97 (146)
Q Consensus 18 s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad 97 (146)
+.++...+.+.|.+.|-++..+.. +.-....++.+++ .+..+.+-|-- ..+..|+++.+..+ ++.+.++|+|
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~--~~~~~~~i~~ak~-~G~~v~~~i~~--~~~~~~~~~~~~~~---~~~~~~~Ga~ 164 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND--VRNLEVAIKAVKK-AGKHVEGAICY--TGSPVHTLEYYVKL---AKELEDMGAD 164 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh--HHHHHHHHHHHHH-CCCeEEEEEEe--cCCCCCCHHHHHHH---HHHHHHcCCC
Confidence 456778899999999999865443 1111222333322 24444332321 11234566655544 5556788999
Q ss_pred EEEEeeecCCCCcCHHHHHHHHHHhC---CCCeEEee
Q psy7930 98 GFVIGALTGEQEIDIEFIRQLKTIIG---DRPITFHR 131 (146)
Q Consensus 98 G~VfG~L~~dg~iD~~~~~~Li~~a~---~~~vtFHR 131 (146)
.|-+. +.-|....+.+.+++...+ +.++-||-
T Consensus 165 ~i~l~--DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~ 199 (275)
T cd07937 165 SICIK--DMAGLLTPYAAYELVKALKKEVGLPIHLHT 199 (275)
T ss_pred EEEEc--CCCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 87654 7788899999999888875 46677773
No 255
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=87.54 E-value=1.4 Score=36.53 Aligned_cols=62 Identities=18% Similarity=0.377 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHhhCCC-cEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeec-CCCCcCHHHHHHHHH
Q psy7930 43 GLTPTLGLYRVIKRLVLV-PVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALT-GEQEIDIEFIRQLKT 120 (146)
Q Consensus 43 GlTPS~g~i~~~~~~~~i-pv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~-~dg~iD~~~~~~Li~ 120 (146)
|-.|+..+++.+++.+++ |+.+ ||+-. |. ++++.+.+.||||+|+|=.- +|.. +.++++.+
T Consensus 167 g~~~~~e~I~~v~~~~~~~pviv------GGGIr-s~-------e~a~~~l~~GAD~VVVGSai~~d~~---~~~~~~~~ 229 (232)
T PRK04169 167 GDPVPPEMVKAVKKALDITPLIY------GGGIR-SP-------EQARELMAAGADTIVVGNIIEEDPK---KTVKAIKK 229 (232)
T ss_pred CCCCCHHHHHHHHHhcCCCcEEE------ECCCC-CH-------HHHHHHHHhCCCEEEEChHHhhCHH---HHHHHHHh
Confidence 455669999999999888 8764 34333 22 45677778999999999543 3332 45555544
Q ss_pred H
Q psy7930 121 I 121 (146)
Q Consensus 121 ~ 121 (146)
.
T Consensus 230 ~ 230 (232)
T PRK04169 230 A 230 (232)
T ss_pred h
Confidence 3
No 256
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=87.53 E-value=8.2 Score=30.65 Aligned_cols=96 Identities=26% Similarity=0.271 Sum_probs=62.7
Q ss_pred eeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHH---------HHHHHHhhCCCcEEEEEccCCCCCcccCHHHH
Q psy7930 11 TLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLG---------LYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEK 81 (146)
Q Consensus 11 ~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g---------~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~ 81 (146)
.+=+-..|..-+..|...|+|-|=|-- +.|..|+-. ++..+...-..+..++||. .+.+-
T Consensus 3 ~l~vp~~~~~~~~~a~~~g~D~vilDl---Ed~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRv-n~~~~------- 71 (221)
T PF03328_consen 3 GLFVPANSPKMLEKAAASGADFVILDL---EDGVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRV-NSLDS------- 71 (221)
T ss_dssp EEEEESTSHHHHHHHHTTCSSEEEEES---STTSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE--SSTTC-------
T ss_pred EEEEeCCCHHHHHHHHhcCCCEEEEeC---cccCCcccchhhHHHHHHHHHhhcccccccccceecC-CCCCc-------
Confidence 344667889999999999999999853 456655532 2222222234667889998 55432
Q ss_pred HHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930 82 EIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 82 ~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~ 123 (146)
..+++|++ +.+.|++||++=-.+. .+..+++++.++
T Consensus 72 ~~~~~Dl~-~l~~g~~gI~lP~ves-----~~~~~~~~~~~~ 107 (221)
T PF03328_consen 72 PHIERDLE-ALDAGADGIVLPKVES-----AEDARQAVAALR 107 (221)
T ss_dssp HHHHHHHH-HHHTTSSEEEETT--S-----HHHHHHHHHHHS
T ss_pred chhhhhhh-hcccCCCeeeccccCc-----HHHHHHHHHHHh
Confidence 23667888 9999999998865432 456666666665
No 257
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=87.53 E-value=4.4 Score=35.19 Aligned_cols=76 Identities=24% Similarity=0.265 Sum_probs=52.8
Q ss_pred eeEE-EecCHHHHHHHHHcCCCEEEecCCCCCCCC-----------------------CCCHHHHHHHHhh-CCCcEEEE
Q psy7930 11 TLEV-CVDSVASALAAVRGGADRLELCAALSEGGL-----------------------TPTLGLYRVIKRL-VLVPVFVM 65 (146)
Q Consensus 11 ~lEv-cv~s~~~a~~A~~~GAdRIELc~~l~~GGl-----------------------TPS~g~i~~~~~~-~~ipv~vM 65 (146)
++|+ +..+.+.|..+++.|+|-|.+ ++ .||+ .|+...+.++++. .++||.+
T Consensus 191 vK~~g~g~s~~~a~~l~~~Gvd~I~V-sg--~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia- 266 (352)
T PRK05437 191 VKEVGFGISKETAKRLADAGVKAIDV-AG--AGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIA- 266 (352)
T ss_pred EEeCCCCCcHHHHHHHHHcCCCEEEE-CC--CCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEE-
Confidence 3444 346799999999999999999 43 2553 2445566666666 4777654
Q ss_pred EccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEee
Q psy7930 66 IRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGA 103 (146)
Q Consensus 66 IRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~ 103 (146)
-|| +... .|+..+..+|||+|-+|-
T Consensus 267 ----~GG-I~~~--------~dv~k~l~~GAd~v~ig~ 291 (352)
T PRK05437 267 ----SGG-IRNG--------LDIAKALALGADAVGMAG 291 (352)
T ss_pred ----ECC-CCCH--------HHHHHHHHcCCCEEEEhH
Confidence 244 3322 678888889999999884
No 258
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=87.52 E-value=6.5 Score=32.15 Aligned_cols=100 Identities=12% Similarity=0.206 Sum_probs=70.3
Q ss_pred cCH-HHHHHHHH-cCCCEEEecC-CCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHH
Q psy7930 17 DSV-ASALAAVR-GGADRLELCA-ALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVE 93 (146)
Q Consensus 17 ~s~-~~a~~A~~-~GAdRIELc~-~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~ 93 (146)
.|+ +-|..-.+ .||+++-+.+ +=...|-.+...+++++.+.+++||.+ ||+.. | .+|++.+.+
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi~v------GGGIr-s-------~e~v~~~l~ 96 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEV------GGGIR-T-------KSQIMDYFA 96 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhcCCeEEE------cCCcC-C-------HHHHHHHHH
Confidence 455 55555666 6999999997 223467778899999999988999765 44333 2 256778888
Q ss_pred cCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEEeecccCC
Q psy7930 94 SGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHRAFDVV 136 (146)
Q Consensus 94 ~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtFHRAFD~~ 136 (146)
+|++-+|+|-.+-. |.+.++++.+.-++ ++++ ++|.-
T Consensus 97 ~Ga~kvvigt~a~~---~~~~l~~~~~~fg~-~ivv--slD~~ 133 (234)
T PRK13587 97 AGINYCIVGTKGIQ---DTDWLKEMAHTFPG-RIYL--SVDAY 133 (234)
T ss_pred CCCCEEEECchHhc---CHHHHHHHHHHcCC-CEEE--EEEee
Confidence 99999999965532 67788888776643 3443 36653
No 259
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=87.49 E-value=1.1 Score=41.93 Aligned_cols=66 Identities=26% Similarity=0.226 Sum_probs=48.1
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD 97 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad 97 (146)
+-+..+.+.|||+|=||+ ..|.+||. ..+++.+++.+++||++.--- ..| +.. .-...+.++|||
T Consensus 159 ~~a~~l~~~Gad~i~i~D--t~G~l~P~~~~~lv~~lk~~~~~pi~~H~Hn-t~G--------lA~--An~laAieAGa~ 225 (593)
T PRK14040 159 DLAKQLEDMGVDSLCIKD--MAGLLKPYAAYELVSRIKKRVDVPLHLHCHA-TTG--------LST--ATLLKAIEAGID 225 (593)
T ss_pred HHHHHHHHcCCCEEEECC--CCCCcCHHHHHHHHHHHHHhcCCeEEEEECC-CCc--------hHH--HHHHHHHHcCCC
Confidence 446778899999999999 47999995 779999999889998876554 333 222 233445677876
Q ss_pred E
Q psy7930 98 G 98 (146)
Q Consensus 98 G 98 (146)
-
T Consensus 226 ~ 226 (593)
T PRK14040 226 G 226 (593)
T ss_pred E
Confidence 3
No 260
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=87.46 E-value=8.2 Score=32.99 Aligned_cols=100 Identities=21% Similarity=0.186 Sum_probs=64.4
Q ss_pred EEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHh------hCCCcEEEEEccCCCCCc----ccCHHHHH
Q psy7930 13 EVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKR------LVLVPVFVMIRVRAGFDF----VFSQAEKE 82 (146)
Q Consensus 13 Evcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~------~~~ipv~vMIRP~R~gdF----~Ys~~E~~ 82 (146)
++-+.++++ |.+.|||=+--- ...| --++...++.+.+ ..++|+..|+-| |+-+| .++.+.+.
T Consensus 97 ~~~~~~ve~---ai~lgadAV~~~--Vy~G-se~e~~~i~~~~~v~~~a~~~Gmp~v~~~Yp-Rg~~~~~~~~~d~~~v~ 169 (265)
T COG1830 97 QVLVATVED---AIRLGADAVGAT--VYVG-SETEREMIENISQVVEDAHELGMPLVAWAYP-RGPAIKDEYHRDADLVG 169 (265)
T ss_pred ceeeeeHHH---HHhCCCcEEEEE--EecC-CcchHHHHHHHHHHHHHHHHcCCceEEEEec-cCCcccccccccHHHHH
Confidence 344444555 568899876433 3334 3445555555543 348999999999 99988 55555444
Q ss_pred HHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeE
Q psy7930 83 IMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPIT 128 (146)
Q Consensus 83 ~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vt 128 (146)
.-.+...++|||=+ +-+-.=|.+..+++++.|. .||.
T Consensus 170 ---~aaRlaaelGADIi-----K~~ytg~~e~F~~vv~~~~-vpVv 206 (265)
T COG1830 170 ---YAARLAAELGADII-----KTKYTGDPESFRRVVAACG-VPVV 206 (265)
T ss_pred ---HHHHHHHHhcCCeE-----eecCCCChHHHHHHHHhCC-CCEE
Confidence 34567889999944 4444445577777777777 6654
No 261
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=87.42 E-value=7.3 Score=35.45 Aligned_cols=104 Identities=15% Similarity=0.192 Sum_probs=69.8
Q ss_pred cceeEEEecCHHHHHHHHHcCCCEEEecCCCCC----CCCCC-CHHHHHHHHhhC---------CCcEEEEEccCCCCCc
Q psy7930 9 KTTLEVCVDSVASALAAVRGGADRLELCAALSE----GGLTP-TLGLYRVIKRLV---------LVPVFVMIRVRAGFDF 74 (146)
Q Consensus 9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~----GGlTP-S~g~i~~~~~~~---------~ipv~vMIRP~R~gdF 74 (146)
..++=+-+-|++++..|.+.|||-|=+-.=... .+..| ....++.+++.. ++||+.+ ||
T Consensus 300 ~~iIGvStHs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAI-----GG-- 372 (437)
T PRK12290 300 GIRLGLSTHGYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAI-----GG-- 372 (437)
T ss_pred CCEEEEecCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEE-----CC--
Confidence 357888999999999999999999988653322 23333 455666655543 6899886 33
Q ss_pred ccCHHHHHHHHHHHHHHHHcCCCEE-EEeeecCCCCcCHHHHHHHHHHhCCCCeE
Q psy7930 75 VFSQAEKEIMALDCHQFVESGADGF-VIGALTGEQEIDIEFIRQLKTIIGDRPIT 128 (146)
Q Consensus 75 ~Ys~~E~~~M~~dI~~~~~~GadG~-VfG~L~~dg~iD~~~~~~Li~~a~~~~vt 128 (146)
+-.+++..+++.|++|| |+++++.... =.++.++|.+.-..-+.+
T Consensus 373 --------I~~~Ni~~vl~aGa~GVAVVSAI~~A~D-P~aa~~~l~~~~~~~~~~ 418 (437)
T PRK12290 373 --------IDQSNAEQVWQCGVSSLAVVRAITLAED-PQLVIEFFDQVMAENQLL 418 (437)
T ss_pred --------cCHHHHHHHHHcCCCEEEEehHhhcCCC-HHHHHHHHHHHHhhcCCC
Confidence 12278899999999998 5677765432 234556666665544443
No 262
>PRK08227 autoinducer 2 aldolase; Validated
Probab=87.35 E-value=4.6 Score=34.17 Aligned_cols=97 Identities=20% Similarity=0.117 Sum_probs=56.4
Q ss_pred EEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHH---H---hhCCCcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930 13 EVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVI---K---RLVLVPVFVMIRVRAGFDFVFSQAEKEIMAL 86 (146)
Q Consensus 13 Evcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~---~---~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~ 86 (146)
..-+.|++ .|.+.|||=+=.-- ..|+- .....++.+ . +..++|+.+ +-| ||.+.. + +.+....
T Consensus 94 ~~l~~sVe---eAvrlGAdAV~~~v--~~Gs~-~E~~~l~~l~~v~~ea~~~G~Plla-~~p-rG~~~~-~--~~~~ia~ 162 (264)
T PRK08227 94 EAVAVDME---DAVRLNACAVAAQV--FIGSE-YEHQSIKNIIQLVDAGLRYGMPVMA-VTA-VGKDMV-R--DARYFSL 162 (264)
T ss_pred ccceecHH---HHHHCCCCEEEEEE--ecCCH-HHHHHHHHHHHHHHHHHHhCCcEEE-Eec-CCCCcC-c--hHHHHHH
Confidence 34444444 47899999665443 34522 112233222 2 234899988 459 988653 3 4447888
Q ss_pred HHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeE
Q psy7930 87 DCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPIT 128 (146)
Q Consensus 87 dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vt 128 (146)
-.+...++|||=+=.-. + + +.++++++++ +.||.
T Consensus 163 aaRiaaELGADiVK~~y-~--~----~~f~~vv~a~-~vPVv 196 (264)
T PRK08227 163 ATRIAAEMGAQIIKTYY-V--E----EGFERITAGC-PVPIV 196 (264)
T ss_pred HHHHHHHHcCCEEecCC-C--H----HHHHHHHHcC-CCcEE
Confidence 89999999999554332 1 1 4556666633 34443
No 263
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=87.33 E-value=3.7 Score=34.19 Aligned_cols=69 Identities=30% Similarity=0.453 Sum_probs=47.1
Q ss_pred HHHHHHHHcCCCEEEecCC-------C---------CCCCCCC------CHHHHHHHHhhCCCcEEEEEccCCCCCcccC
Q psy7930 20 ASALAAVRGGADRLELCAA-------L---------SEGGLTP------TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFS 77 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~-------l---------~~GGlTP------S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys 77 (146)
+-+..+++.|+|=|.+... + ..||+++ +...++++++.+++||... || +.|
T Consensus 173 ~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~-----GG--I~~ 245 (301)
T PRK07259 173 EIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGM-----GG--ISS 245 (301)
T ss_pred HHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEE-----CC--CCC
Confidence 3467788999999987421 1 2366665 4678899988889997652 44 334
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930 78 QAEKEIMALDCHQFVESGADGFVIG 102 (146)
Q Consensus 78 ~~E~~~M~~dI~~~~~~GadG~VfG 102 (146)
.++ +..+...|||.|.+|
T Consensus 246 ~~d-------a~~~l~aGAd~V~ig 263 (301)
T PRK07259 246 AED-------AIEFIMAGASAVQVG 263 (301)
T ss_pred HHH-------HHHHHHcCCCceeEc
Confidence 444 444456899999887
No 264
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=87.33 E-value=2.4 Score=36.59 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=36.2
Q ss_pred hhCCCcEEEEEccCCCCCcccC-HHHHHHHHHHHHHHHHcCCCEEEEeeecCC
Q psy7930 56 RLVLVPVFVMIRVRAGFDFVFS-QAEKEIMALDCHQFVESGADGFVIGALTGE 107 (146)
Q Consensus 56 ~~~~ipv~vMIRP~R~gdF~Ys-~~E~~~M~~dI~~~~~~GadG~VfG~L~~d 107 (146)
+..+|-....|.| |.+|+|| +++++.++.=+..+.++|++.|. +|-+|
T Consensus 66 ~~~~V~Fv~aisP--g~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fa--ilfDD 114 (306)
T PF07555_consen 66 KANGVDFVYAISP--GLDICYSSEEDFEALKAKFDQLYDLGVRSFA--ILFDD 114 (306)
T ss_dssp HHTT-EEEEEEBG--TTT--TSHHHHHHHHHHHHHHHHCTT--EEE--EE-TS
T ss_pred HHcCCEEEEEECc--ccccccCcHHHHHHHHHHHHHHHhcCCCEEE--EeecC
Confidence 3458999999999 9999998 88999999999999999999764 45555
No 265
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=87.30 E-value=1.7 Score=38.46 Aligned_cols=60 Identities=13% Similarity=0.196 Sum_probs=45.0
Q ss_pred cccCHHHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEEeecccCCC
Q psy7930 74 FVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHRAFDVVR 137 (146)
Q Consensus 74 F~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtFHRAFD~~~ 137 (146)
+.|+.+ ..+.||+.+++.|.|||++=+...|. --.+++..+.++|..+.+-+-=-||...
T Consensus 12 ~~yt~~---dw~~di~~A~~~GIDgFaLNig~~d~-~~~~~l~~a~~AA~~~gFKlf~SfD~~~ 71 (386)
T PF03659_consen 12 YNYTQE---DWEADIRLAQAAGIDGFALNIGSSDS-WQPDQLADAYQAAEAVGFKLFFSFDMNS 71 (386)
T ss_pred CCCCHH---HHHHHHHHHHHcCCCEEEEecccCCc-ccHHHHHHHHHHHHhcCCEEEEEecccC
Confidence 445544 45689999999999999999986664 4468889999999866644444677753
No 266
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=87.24 E-value=4.9 Score=34.06 Aligned_cols=97 Identities=25% Similarity=0.293 Sum_probs=53.7
Q ss_pred HHHHHHcCCCEEEecCCCCCCCCCCC------HHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHH--------HH
Q psy7930 22 ALAAVRGGADRLELCAALSEGGLTPT------LGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIM--------AL 86 (146)
Q Consensus 22 a~~A~~~GAdRIELc~~l~~GGlTPS------~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M--------~~ 86 (146)
+..+.+.|++++-|. ||..|. ..+++.+++.. ++.++. +|..|+..+ .+
T Consensus 81 ~~~~~~~G~~~i~l~-----gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~-----------~s~~ei~~~~~~~g~~~~e 144 (340)
T TIGR03699 81 IEELVAYGGTQILLQ-----GGVNPDLGLDYYEDLFRAIKARFPHIHIHS-----------FSPVEIVYIAKKEGLSLRE 144 (340)
T ss_pred HHHHHHcCCcEEEEe-----cCCCCCCCHHHHHHHHHHHHHHCCCcCCCC-----------CCHHHHHHHhccCCCCHHH
Confidence 444567899999885 666664 23566665543 333322 345555433 57
Q ss_pred HHHHHHHcCCCEEEE-ee--ecCC-------CCcCHHHHHHHHHHhC--CCCeEEeeccc
Q psy7930 87 DCHQFVESGADGFVI-GA--LTGE-------QEIDIEFIRQLKTIIG--DRPITFHRAFD 134 (146)
Q Consensus 87 dI~~~~~~GadG~Vf-G~--L~~d-------g~iD~~~~~~Li~~a~--~~~vtFHRAFD 134 (146)
.++.++++|++.+-. |+ ++++ +..+.+..-+.++.++ |++++.|.-|=
T Consensus 145 ~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiG 204 (340)
T TIGR03699 145 VLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFG 204 (340)
T ss_pred HHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEee
Confidence 788889999886642 21 1110 1234444445555554 56666665544
No 267
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=87.18 E-value=4.1 Score=34.37 Aligned_cols=70 Identities=27% Similarity=0.395 Sum_probs=46.7
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCC--CCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLT--PTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD 97 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlT--PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad 97 (146)
+-+..+++.|+|-|.+-.....+|.. +....++++++.+++||.. -||=+ |.++++.+. +..|+|
T Consensus 151 ~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~-----nGgI~--~~~da~~~l------~~~gad 217 (319)
T TIGR00737 151 EAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIG-----NGDIF--SPEDAKAML------ETTGCD 217 (319)
T ss_pred HHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEE-----eCCCC--CHHHHHHHH------HhhCCC
Confidence 44567888999999886544445543 3577888888888888754 35522 333333332 246999
Q ss_pred EEEEe
Q psy7930 98 GFVIG 102 (146)
Q Consensus 98 G~VfG 102 (146)
||.+|
T Consensus 218 ~Vmig 222 (319)
T TIGR00737 218 GVMIG 222 (319)
T ss_pred EEEEC
Confidence 99998
No 268
>PLN02905 beta-amylase
Probab=87.13 E-value=2.4 Score=40.37 Aligned_cols=73 Identities=18% Similarity=0.291 Sum_probs=52.9
Q ss_pred CCcEEEEEcc---CCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEE----eeecC--CCCcCHHHHHHHHHHhC--CCCe
Q psy7930 59 LVPVFVMIRV---RAGFDFVFSQAEKEIMALDCHQFVESGADGFVI----GALTG--EQEIDIEFIRQLKTIIG--DRPI 127 (146)
Q Consensus 59 ~ipv~vMIRP---~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~Vf----G~L~~--dg~iD~~~~~~Li~~a~--~~~v 127 (146)
.+||+||.=- ...+. -..-+.|...++.+|++|+|||.+ |+.-. .++.|...=++|.+.++ ++++
T Consensus 264 ~VpVyVMLPLd~V~~~~~----l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsgY~~L~~mvr~~GLKl 339 (702)
T PLN02905 264 YVPVYVMLPLGVINMKCE----LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKL 339 (702)
T ss_pred ceeEEEEeecceecCCCc----ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeE
Confidence 4999999854 01222 124567899999999999999987 66653 57899999999999997 5654
Q ss_pred EEeecccC
Q psy7930 128 TFHRAFDV 135 (146)
Q Consensus 128 tFHRAFD~ 135 (146)
--=+.|-+
T Consensus 340 qvVMSFHq 347 (702)
T PLN02905 340 QVVMSFHE 347 (702)
T ss_pred EEEEEecc
Confidence 43344443
No 269
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=87.12 E-value=10 Score=32.22 Aligned_cols=114 Identities=20% Similarity=0.272 Sum_probs=70.2
Q ss_pred cceeEEEecCHHHHHHHHH----cCCCEEEecCCC--------CCC-CCCCCH----HHHHHHHhhCCCcEEEEEccCCC
Q psy7930 9 KTTLEVCVDSVASALAAVR----GGADRLELCAAL--------SEG-GLTPTL----GLYRVIKRLVLVPVFVMIRVRAG 71 (146)
Q Consensus 9 ~~~lEvcv~s~~~a~~A~~----~GAdRIELc~~l--------~~G-GlTPS~----g~i~~~~~~~~ipv~vMIRP~R~ 71 (146)
.+.+.++..+++.+..|.+ .|++-|.|+-+= ..| +|--.. .+++.+++.+++||.|=||- |
T Consensus 55 p~~~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~--g 132 (309)
T PF01207_consen 55 PLIVQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRL--G 132 (309)
T ss_dssp TEEEEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEES--E
T ss_pred ceeEEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEeccc--c
Confidence 4789999999988887754 489999998631 111 233333 35666667789999999998 2
Q ss_pred CCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeecC----CCCcCHHHHHHHHHHhCCCCeEEe
Q psy7930 72 FDFVFSQAEKEIMALDCHQFVESGADGFVIGALTG----EQEIDIEFIRQLKTIIGDRPITFH 130 (146)
Q Consensus 72 gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~----dg~iD~~~~~~Li~~a~~~~vtFH 130 (146)
-+ .+. +...+=++.+.+.|++.+.+=+=|+ .|..|.+.++++.+... +|++-+
T Consensus 133 ~~--~~~---~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~-ipvi~N 189 (309)
T PF01207_consen 133 WD--DSP---EETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALP-IPVIAN 189 (309)
T ss_dssp CT----C---HHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-T-SEEEEE
T ss_pred cc--cch---hHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhccc-ceeEEc
Confidence 22 222 2334456788999999999887554 35799999999988877 676654
No 270
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=87.08 E-value=4 Score=34.32 Aligned_cols=108 Identities=14% Similarity=-0.005 Sum_probs=65.4
Q ss_pred ecCHHHHHHHHHcCCCEEEecCCC------CCCCCCCCHH--HHHHHHhh---CCCcEEEEEccCCCCCcc-cCHHHHHH
Q psy7930 16 VDSVASALAAVRGGADRLELCAAL------SEGGLTPTLG--LYRVIKRL---VLVPVFVMIRVRAGFDFV-FSQAEKEI 83 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~~l------~~GGlTPS~g--~i~~~~~~---~~ipv~vMIRP~R~gdF~-Ys~~E~~~ 83 (146)
+.+..++..|.++|+++|.++-.- ..=+.|+... .++.+.++ .+..| .+-+ - ||- ....+.+.
T Consensus 74 ~~~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v--~~~~-~--d~~~~~r~~~~~ 148 (280)
T cd07945 74 VDGDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEV--NIYL-E--DWSNGMRDSPDY 148 (280)
T ss_pred cCcHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEE--EEEE-E--eCCCCCcCCHHH
Confidence 577888999999999999998521 1123455322 22222222 24433 3333 1 122 10223455
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC----CCCeEEe
Q psy7930 84 MALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG----DRPITFH 130 (146)
Q Consensus 84 M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~----~~~vtFH 130 (146)
+.+=++.+.++|++.|.+. +.-|..+...+.++++..+ ++++.||
T Consensus 149 ~~~~~~~~~~~G~~~i~l~--DT~G~~~P~~v~~l~~~l~~~~~~~~i~~H 197 (280)
T cd07945 149 VFQLVDFLSDLPIKRIMLP--DTLGILSPFETYTYISDMVKRYPNLHFDFH 197 (280)
T ss_pred HHHHHHHHHHcCCCEEEec--CCCCCCCHHHHHHHHHHHHhhCCCCeEEEE
Confidence 5566777888999976553 6778888888888877654 3667777
No 271
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=86.98 E-value=3.9 Score=33.25 Aligned_cols=84 Identities=24% Similarity=0.326 Sum_probs=57.0
Q ss_pred ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC-CcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930 16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL-VPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES 94 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~-ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~ 94 (146)
+.|++++..|.+.|||-|=|= . .+. -+...++.++.... +|+ | | -||= | .+++..+.++
T Consensus 116 ~~T~~E~~~A~~~Gad~vklF---P-a~~-~G~~~ik~l~~~~p~ip~--~--a-tGGI---~-------~~N~~~~l~a 175 (213)
T PRK06552 116 CMTVTEIVTALEAGSEIVKLF---P-GST-LGPSFIKAIKGPLPQVNV--M--V-TGGV---N-------LDNVKDWFAA 175 (213)
T ss_pred cCCHHHHHHHHHcCCCEEEEC---C-ccc-CCHHHHHHHhhhCCCCEE--E--E-ECCC---C-------HHHHHHHHHC
Confidence 468999999999999999982 1 111 23566887777653 553 3 8 7871 1 3789999999
Q ss_pred CCCEEEEe-eecCC-CCcCHHHHHHHH
Q psy7930 95 GADGFVIG-ALTGE-QEIDIEFIRQLK 119 (146)
Q Consensus 95 GadG~VfG-~L~~d-g~iD~~~~~~Li 119 (146)
|++++.+| .|... -.=|.+.+++..
T Consensus 176 Ga~~vavgs~l~~~~~~~~~~~i~~~a 202 (213)
T PRK06552 176 GADAVGIGGELNKLASQGDFDLITEKA 202 (213)
T ss_pred CCcEEEEchHHhCccccCCHHHHHHHH
Confidence 99999999 55432 122445554443
No 272
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=86.89 E-value=5.9 Score=32.94 Aligned_cols=106 Identities=13% Similarity=0.004 Sum_probs=56.8
Q ss_pred HHHHHHHHcCCCEEEecCCC---CCCCCCCC------HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHH
Q psy7930 20 ASALAAVRGGADRLELCAAL---SEGGLTPT------LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQ 90 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l---~~GGlTPS------~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~ 90 (146)
..+..+.+.|...+|+.-+. ...|+|+. ...+.++++..++-+...+=.-|. ++++..+ +-++.
T Consensus 77 ~~~~e~~~~Gvt~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~~~----~~~~~~~---~~~~~ 149 (325)
T cd01320 77 EYLEDAAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGLRH----LSPESAQ---ETLEL 149 (325)
T ss_pred HHHHHHHHcCCEEEEEEeCchhhccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEecCC----CCHHHHH---HHHHH
Confidence 44566788899999987443 13355553 223344444444433322211011 1233333 33444
Q ss_pred HHHcCCCEEEEee-e-cCCCCcCHHHHHHHHHHhC--CCCeEEeecc
Q psy7930 91 FVESGADGFVIGA-L-TGEQEIDIEFIRQLKTIIG--DRPITFHRAF 133 (146)
Q Consensus 91 ~~~~GadG~VfG~-L-~~dg~iD~~~~~~Li~~a~--~~~vtFHRAF 133 (146)
+.+.+.+++ .|+ | -.+...+.+.++.+.+.|+ ++++++|=+-
T Consensus 150 ~~~~~~~~v-vg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~~E 195 (325)
T cd01320 150 ALKYRDKGV-VGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAHAGE 195 (325)
T ss_pred HHhccCCCE-EEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEeCCC
Confidence 444455543 332 2 2333457788889988887 8999999653
No 273
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=86.82 E-value=1.6 Score=36.19 Aligned_cols=54 Identities=28% Similarity=0.410 Sum_probs=38.4
Q ss_pred CCCCCCCC---HHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeecCC
Q psy7930 40 SEGGLTPT---LGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGE 107 (146)
Q Consensus 40 ~~GGlTPS---~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~d 107 (146)
+-||.-+. ..+++.+++.+ ++|+.+ -|| .-|. ++++.+.++|||+||+|=+=.+
T Consensus 156 E~gs~~g~~v~~e~i~~v~~~~~~~pl~v-----GGG--Irs~-------e~a~~l~~aGAD~VVVGs~~~~ 213 (223)
T TIGR01768 156 EAGSGAPEPVPPELVAEVKKVLDKARLFV-----GGG--IRSV-------EKAREMAEAGADTIVTGNVIEE 213 (223)
T ss_pred EecCCCCCCcCHHHHHHHHHHcCCCCEEE-----ecC--CCCH-------HHHHHHHHcCCCEEEECcHHhh
Confidence 44666666 88999999988 888866 233 3333 4566677889999999965443
No 274
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=86.73 E-value=3.5 Score=34.55 Aligned_cols=41 Identities=27% Similarity=0.275 Sum_probs=30.5
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEc
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIR 67 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIR 67 (146)
..|..-+++|||-|-||.| |+ .-++..+.+.++||+.=||.
T Consensus 66 ~~a~~Le~~GAd~i~l~~N------T~-H~~~d~iq~~~~iPllhIid 106 (230)
T COG1794 66 DAAKKLERAGADFIVLPTN------TM-HKVADDIQKAVGIPLLHIID 106 (230)
T ss_pred HHHHHHHhcCCCEEEEeCC------cH-HHHHHHHHHhcCCCeehHHH
Confidence 4566678899999999987 33 34666777778888777774
No 275
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=86.73 E-value=2 Score=36.75 Aligned_cols=83 Identities=18% Similarity=0.159 Sum_probs=52.4
Q ss_pred CHHHHHHHHHcCCCEEEe---------cCCCCCCCCCCCH-HHHHHHHh--hCCCcEEEEEccCCCCCcccCHHHHHHHH
Q psy7930 18 SVASALAAVRGGADRLEL---------CAALSEGGLTPTL-GLYRVIKR--LVLVPVFVMIRVRAGFDFVFSQAEKEIMA 85 (146)
Q Consensus 18 s~~~a~~A~~~GAdRIEL---------c~~l~~GGlTPS~-g~i~~~~~--~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~ 85 (146)
+++-...+...+.-+|-+ +..++-+ |||. +=++.+++ ..+||+.++|.| ==-.. ++ +.+.
T Consensus 131 Dld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~--apsp~~Ri~al~~l~eaGi~~~v~v~P-IiP~~--~d---~e~e 202 (297)
T COG1533 131 DLDLLLELAERGKVRVAVSITTLDEELAKILEPR--APSPEERLEALKELSEAGIPVGLFVAP-IIPGL--ND---EELE 202 (297)
T ss_pred hHHHHHhhhhccceEEEEEeecCcHHHHHhcCCC--CcCHHHHHHHHHHHHHCCCeEEEEEec-ccCCC--Ch---HHHH
Confidence 345566666666555543 3334443 3443 33444433 248999999999 32211 33 6677
Q ss_pred HHHHHHHHcCCCEEEEeeecCCC
Q psy7930 86 LDCHQFVESGADGFVIGALTGEQ 108 (146)
Q Consensus 86 ~dI~~~~~~GadG~VfG~L~~dg 108 (146)
+-+..+.+.|+..++.+.|+-.+
T Consensus 203 ~~l~~~~~ag~~~v~~~~l~~~~ 225 (297)
T COG1533 203 RILEAAAEAGARVVVYGTLRLRL 225 (297)
T ss_pred HHHHHHHHcCCCeeEeeeeeccH
Confidence 78888999999999999997654
No 276
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=86.70 E-value=2.8 Score=37.04 Aligned_cols=70 Identities=26% Similarity=0.286 Sum_probs=46.7
Q ss_pred ecCHHHHHHHHHcCCCEEEecCCCCCCCC----------CCCHHHHHHHHh-------hCC---CcEEEEEccCCCCCcc
Q psy7930 16 VDSVASALAAVRGGADRLELCAALSEGGL----------TPTLGLYRVIKR-------LVL---VPVFVMIRVRAGFDFV 75 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~~l~~GGl----------TPS~g~i~~~~~-------~~~---ipv~vMIRP~R~gdF~ 75 (146)
+.|.++++.+.+.|||=|-. ..||. .|....+..+.+ ..+ +||.. .|++.
T Consensus 196 V~t~e~A~~~~~aGaDgV~~----G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIA------dGGI~ 265 (369)
T TIGR01304 196 VNDYTTALHLMRTGAAGVIV----GPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIA------DGGIE 265 (369)
T ss_pred CCCHHHHHHHHHcCCCEEEE----CCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEE------eCCCC
Confidence 68899999999999999872 22331 232333333322 122 55432 45577
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCEEEEee
Q psy7930 76 FSQAEKEIMALDCHQFVESGADGFVIGA 103 (146)
Q Consensus 76 Ys~~E~~~M~~dI~~~~~~GadG~VfG~ 103 (146)
++ .||..+..+|||++.+|-
T Consensus 266 tg--------~di~kAlAlGAdaV~iGt 285 (369)
T TIGR01304 266 TS--------GDLVKAIACGADAVVLGS 285 (369)
T ss_pred CH--------HHHHHHHHcCCCEeeeHH
Confidence 66 789999999999999993
No 277
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=86.59 E-value=4.7 Score=35.03 Aligned_cols=74 Identities=20% Similarity=0.152 Sum_probs=48.1
Q ss_pred cCHHHHHHH-HHcCCCEEEecCCC-----CCCCCCCCH----HHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930 17 DSVASALAA-VRGGADRLELCAAL-----SEGGLTPTL----GLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMAL 86 (146)
Q Consensus 17 ~s~~~a~~A-~~~GAdRIELc~~l-----~~GGlTPS~----g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~ 86 (146)
.+.+.+..+ ...+||-+||.-+. ..+|-+. + ..++.+++.+++||.|=+.+ |..+ .+
T Consensus 135 ~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~-f~~~le~i~~i~~~~~vPVivK~~g-----~g~s-------~~ 201 (352)
T PRK05437 135 YGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRD-FRGWLDNIAEIVSALPVPVIVKEVG-----FGIS-------KE 201 (352)
T ss_pred CCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCccc-HHHHHHHHHHHHHhhCCCEEEEeCC-----CCCc-------HH
Confidence 345555544 34589999986433 2233332 3 56777888888998754444 3334 46
Q ss_pred HHHHHHHcCCCEEEEee
Q psy7930 87 DCHQFVESGADGFVIGA 103 (146)
Q Consensus 87 dI~~~~~~GadG~VfG~ 103 (146)
+++.+.+.|+|+|+++-
T Consensus 202 ~a~~l~~~Gvd~I~Vsg 218 (352)
T PRK05437 202 TAKRLADAGVKAIDVAG 218 (352)
T ss_pred HHHHHHHcCCCEEEECC
Confidence 77788889999999865
No 278
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=86.58 E-value=12 Score=31.73 Aligned_cols=88 Identities=22% Similarity=0.315 Sum_probs=60.4
Q ss_pred CHH-HHHHHHHcC-CCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930 18 SVA-SALAAVRGG-ADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES 94 (146)
Q Consensus 18 s~~-~a~~A~~~G-AdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~ 94 (146)
|++ .+..++..| ||-|=+-. ..-|.+|+...++.+++.. ++|+ +|- +| = +. +.+..+.+.
T Consensus 158 ~~~e~a~~~~~~~~aDavivtG--~~TG~~~d~~~l~~vr~~~~~~Pv--llg---gG-v--t~-------eNv~e~l~~ 220 (257)
T TIGR00259 158 DLESIALDTVERGLADAVILSG--KTTGTEVDLELLKLAKETVKDTPV--LAG---SG-V--NL-------ENVEELLSI 220 (257)
T ss_pred CHHHHHHHHHHhcCCCEEEECc--CCCCCCCCHHHHHHHHhccCCCeE--EEE---CC-C--CH-------HHHHHHHhh
Confidence 444 456556555 88775543 3458999999999998855 6786 332 22 1 22 233444444
Q ss_pred CCCEEEEee-ecCCC----CcCHHHHHHHHHHhC
Q psy7930 95 GADGFVIGA-LTGEQ----EIDIEFIRQLKTIIG 123 (146)
Q Consensus 95 GadG~VfG~-L~~dg----~iD~~~~~~Li~~a~ 123 (146)
+||+.+|= +.++| .+|.+++++|+++++
T Consensus 221 -adGviVgS~~K~~G~~~n~~D~~rV~~Fm~~v~ 253 (257)
T TIGR00259 221 -ADGVIVATTIKKDGVFNNFVDQARVSQFVEKVA 253 (257)
T ss_pred -CCEEEECCCcccCCccCCCcCHHHHHHHHHHHH
Confidence 99999984 66778 799999999999886
No 279
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=86.58 E-value=7.5 Score=33.00 Aligned_cols=105 Identities=18% Similarity=0.270 Sum_probs=71.4
Q ss_pred HHHHHHHHcCCCEEEecCCCC-CCCCCCCHHHHHHHHhhCC-CcEEEEEccCC--CCC-cccCHHHHH----HHHHHHHH
Q psy7930 20 ASALAAVRGGADRLELCAALS-EGGLTPTLGLYRVIKRLVL-VPVFVMIRVRA--GFD-FVFSQAEKE----IMALDCHQ 90 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~-~GGlTPS~g~i~~~~~~~~-ipv~vMIRP~R--~gd-F~Ys~~E~~----~M~~dI~~ 90 (146)
+++....+.||+|+=|.+..- .|++- +.+++++.+..+ =.|.+=|=- | .|. .+|+..=.+ ...+-+..
T Consensus 95 e~i~~~l~~Ga~rViigT~Av~~~~~~--p~~v~~~~~~~G~~~IvvsiD~-k~~~g~~~Va~~GW~~~t~~~~~e~~~~ 171 (262)
T PLN02446 95 ENAMSYLDAGASHVIVTSYVFRDGQID--LERLKDLVRLVGKQRLVLDLSC-RKKDGRYYVVTDRWQKFSDLAVDEETLE 171 (262)
T ss_pred HHHHHHHHcCCCEEEEchHHHhCCCCC--HHHHHHHHHHhCCCCEEEEEEE-EecCCCEEEEECCCcccCCCCHHHHHHH
Confidence 899999999999999987433 23322 568888887762 345555555 4 443 344322211 11223577
Q ss_pred HHHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeE
Q psy7930 91 FVESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPIT 128 (146)
Q Consensus 91 ~~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vt 128 (146)
+.+.|+..|++=-.+.||+ +|.+.++++.+.. ++|++
T Consensus 172 ~~~~g~~eii~TdI~rDGtl~G~d~el~~~l~~~~-~ipVI 211 (262)
T PLN02446 172 FLAAYCDEFLVHGVDVEGKRLGIDEELVALLGEHS-PIPVT 211 (262)
T ss_pred HHHhCCCEEEEEEEcCCCcccCCCHHHHHHHHhhC-CCCEE
Confidence 7888999999999999986 7999999998874 34443
No 280
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=86.52 E-value=4.1 Score=33.23 Aligned_cols=94 Identities=19% Similarity=0.299 Sum_probs=63.2
Q ss_pred HHHHHHHHcCCCEEEecCCCC---CCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930 20 ASALAAVRGGADRLELCAALS---EGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG 95 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~---~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G 95 (146)
.++..|.+.|||-|.++-++. .|-..--...++++++.+ ++|+.|++ + .+ + -+++|+. .=.+.+.++|
T Consensus 74 ~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIl-E-~~--~-L~~~ei~---~a~~ia~eaG 145 (211)
T TIGR00126 74 YETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVII-E-TG--L-LTDEEIR---KACEICIDAG 145 (211)
T ss_pred HHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEE-e-cC--C-CCHHHHH---HHHHHHHHhC
Confidence 677889999999999998765 566666777888888766 68888844 3 22 3 4666554 5566889999
Q ss_pred CCEEEEe--eecCCCCcCHHHHHHHHHHhC
Q psy7930 96 ADGFVIG--ALTGEQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 96 adG~VfG--~L~~dg~iD~~~~~~Li~~a~ 123 (146)
||-+-.. +-. +.-..+..+.|.+..+
T Consensus 146 ADfvKTsTGf~~--~gat~~dv~~m~~~v~ 173 (211)
T TIGR00126 146 ADFVKTSTGFGA--GGATVEDVRLMRNTVG 173 (211)
T ss_pred CCEEEeCCCCCC--CCCCHHHHHHHHHHhc
Confidence 9976543 422 2244444444444443
No 281
>PLN02826 dihydroorotate dehydrogenase
Probab=86.49 E-value=3.1 Score=37.19 Aligned_cols=78 Identities=21% Similarity=0.243 Sum_probs=48.9
Q ss_pred ecCHHHHHHHHHcCCCEEEec-CCCCCCCCCCC------HHHHHHHHhh---------CCCcEEEEEccCCCCCcccCHH
Q psy7930 16 VDSVASALAAVRGGADRLELC-AALSEGGLTPT------LGLYRVIKRL---------VLVPVFVMIRVRAGFDFVFSQA 79 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc-~~l~~GGlTPS------~g~i~~~~~~---------~~ipv~vMIRP~R~gdF~Ys~~ 79 (146)
++++..........||-|||+ |....-|+..- ..+++.+++. .++||.|=|-| - .+++
T Consensus 203 ~~Dy~~~~~~~~~~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaP-d-----l~~~ 276 (409)
T PLN02826 203 AADYVQGVRALSQYADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAP-D-----LSKE 276 (409)
T ss_pred HHHHHHHHHHHhhhCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCC-C-----CCHH
Confidence 344544444444569999999 43433444322 3556655432 36899999988 2 2455
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEe
Q psy7930 80 EKEIMALDCHQFVESGADGFVIG 102 (146)
Q Consensus 80 E~~~M~~dI~~~~~~GadG~VfG 102 (146)
++..+ ++.+.+.|+||||.-
T Consensus 277 di~~i---a~~a~~~G~dGIi~~ 296 (409)
T PLN02826 277 DLEDI---AAVALALGIDGLIIS 296 (409)
T ss_pred HHHHH---HHHHHHcCCCEEEEE
Confidence 55444 456789999999875
No 282
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=86.46 E-value=3.2 Score=35.40 Aligned_cols=75 Identities=29% Similarity=0.345 Sum_probs=50.4
Q ss_pred HHHHHHHHcCCCEEEecC---CC--------------CCCCCCC--CHHHHHHHHhh-CCCcEEEEEccCCCCCcccCHH
Q psy7930 20 ASALAAVRGGADRLELCA---AL--------------SEGGLTP--TLGLYRVIKRL-VLVPVFVMIRVRAGFDFVFSQA 79 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~---~l--------------~~GGlTP--S~g~i~~~~~~-~~ipv~vMIRP~R~gdF~Ys~~ 79 (146)
+-+....++|||=|||== +. -.+|.|+ .+.+++++++. .++|+..|--= .--|.|.-+
T Consensus 35 e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~--Npi~~~Gie 112 (265)
T COG0159 35 EIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYY--NPIFNYGIE 112 (265)
T ss_pred HHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEec--cHHHHhhHH
Confidence 334445789999999952 11 1247777 46788888854 78999999753 113555554
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEe
Q psy7930 80 EKEIMALDCHQFVESGADGFVIG 102 (146)
Q Consensus 80 E~~~M~~dI~~~~~~GadG~VfG 102 (146)
.| ++.+++.|+||+++=
T Consensus 113 ~F------~~~~~~~GvdGlivp 129 (265)
T COG0159 113 KF------LRRAKEAGVDGLLVP 129 (265)
T ss_pred HH------HHHHHHcCCCEEEeC
Confidence 43 567888999988663
No 283
>PLN00197 beta-amylase; Provisional
Probab=86.46 E-value=1.8 Score=40.44 Aligned_cols=72 Identities=18% Similarity=0.272 Sum_probs=52.4
Q ss_pred CCcEEEEEccCCCCCcccCH---HHHHHHHHHHHHHHHcCCCEEEE----eeecC--CCCcCHHHHHHHHHHhC--CCCe
Q psy7930 59 LVPVFVMIRVRAGFDFVFSQ---AEKEIMALDCHQFVESGADGFVI----GALTG--EQEIDIEFIRQLKTIIG--DRPI 127 (146)
Q Consensus 59 ~ipv~vMIRP~R~gdF~Ys~---~E~~~M~~dI~~~~~~GadG~Vf----G~L~~--dg~iD~~~~~~Li~~a~--~~~v 127 (146)
.+||+||.=- |-+=+. ..-+.|..+++.+|++|+|||.+ |+.-. .++.|...=++|.+.++ |+++
T Consensus 105 ~vpvyVMLPL----d~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~~GLKl 180 (573)
T PLN00197 105 GVPVYVMMPL----DSVTMGNTVNRRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKRHGLKV 180 (573)
T ss_pred CeeEEEEeec----ceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeE
Confidence 5999999854 122111 23457899999999999999987 66653 57899999999999997 5654
Q ss_pred EEeeccc
Q psy7930 128 TFHRAFD 134 (146)
Q Consensus 128 tFHRAFD 134 (146)
--=+.|-
T Consensus 181 q~VmSFH 187 (573)
T PLN00197 181 QAVMSFH 187 (573)
T ss_pred EEEEEec
Confidence 4334444
No 284
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=86.35 E-value=3.6 Score=31.66 Aligned_cols=70 Identities=20% Similarity=0.219 Sum_probs=38.7
Q ss_pred CHHHHHHHHHcCCCEEEecCCCCCC--CCCCCH---HHHHHHHhhC-----CCcEEEEEccCCCCCcccCHHHHHHHHHH
Q psy7930 18 SVASALAAVRGGADRLELCAALSEG--GLTPTL---GLYRVIKRLV-----LVPVFVMIRVRAGFDFVFSQAEKEIMALD 87 (146)
Q Consensus 18 s~~~a~~A~~~GAdRIELc~~l~~G--GlTPS~---g~i~~~~~~~-----~ipv~vMIRP~R~gdF~Ys~~E~~~M~~d 87 (146)
+..+...+...++|.+=+-+ +..| |-+-.. ..++++++.. ++|+.+- || +.. ++
T Consensus 116 ~~~~~~~~~~~~~d~i~~~~-~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~-----GG--------I~~--en 179 (211)
T cd00429 116 TPVEVLEPYLDEVDLVLVMS-VNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVD-----GG--------INL--ET 179 (211)
T ss_pred CCHHHHHHHHhhCCEEEEEE-ECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEE-----CC--------CCH--HH
Confidence 34444455555688776533 2223 322222 3444554444 3676442 22 111 56
Q ss_pred HHHHHHcCCCEEEEee
Q psy7930 88 CHQFVESGADGFVIGA 103 (146)
Q Consensus 88 I~~~~~~GadG~VfG~ 103 (146)
+..+.+.|+||||+|-
T Consensus 180 v~~~~~~gad~iivgs 195 (211)
T cd00429 180 IPLLAEAGADVLVAGS 195 (211)
T ss_pred HHHHHHcCCCEEEECH
Confidence 8889999999999994
No 285
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=86.21 E-value=4.1 Score=33.00 Aligned_cols=67 Identities=16% Similarity=0.147 Sum_probs=46.7
Q ss_pred HHcCCCEEEecCCCCCCCC--CCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEee
Q psy7930 26 VRGGADRLELCAALSEGGL--TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGA 103 (146)
Q Consensus 26 ~~~GAdRIELc~~l~~GGl--TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~ 103 (146)
.+.|+ + +|+.+.+..|+ -|...+++++.+.+++||.+ -|| .. |. +|++.+.+.|++|+++|=
T Consensus 151 ~~~g~-~-ii~tdI~~dGt~~G~d~eli~~i~~~~~~pvia-----~GG-i~-s~-------ed~~~l~~~Ga~~vivgs 214 (221)
T TIGR00734 151 NSFDY-G-LIVLDIHSVGTMKGPNLELLTKTLELSEHPVML-----GGG-IS-GV-------EDLELLKEMGVSAVLVAT 214 (221)
T ss_pred HhcCC-E-EEEEECCccccCCCCCHHHHHHHHhhCCCCEEE-----eCC-CC-CH-------HHHHHHHHCCCCEEEEhH
Confidence 45677 5 77777777654 36789999999998999754 244 32 33 456667778999999984
Q ss_pred ecCCC
Q psy7930 104 LTGEQ 108 (146)
Q Consensus 104 L~~dg 108 (146)
.=-+|
T Consensus 215 al~~g 219 (221)
T TIGR00734 215 AVHKG 219 (221)
T ss_pred HhhCC
Confidence 43333
No 286
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=86.20 E-value=7.1 Score=36.15 Aligned_cols=108 Identities=18% Similarity=0.193 Sum_probs=74.8
Q ss_pred CHHHHHHHHHcCCCEEEecCCCCC-------CCCCCCHHHHHHHHhhCCCc-EEEEEccCCCCC---c------------
Q psy7930 18 SVASALAAVRGGADRLELCAALSE-------GGLTPTLGLYRVIKRLVLVP-VFVMIRVRAGFD---F------------ 74 (146)
Q Consensus 18 s~~~a~~A~~~GAdRIELc~~l~~-------GGlTPS~g~i~~~~~~~~ip-v~vMIRP~R~gd---F------------ 74 (146)
.++++....+.|||||=|.+..-. -|---...+++++.+..+-- |.|-|=+ |.+- .
T Consensus 336 ~~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~-k~~~~~~~~~~~~~~~~~~~ 414 (538)
T PLN02617 336 SLEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDP-RRVYVKDPSDVPFKTVKVTN 414 (538)
T ss_pred hHHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEec-CcCcccCccccccccccccc
Confidence 358899999999999999983211 12222578999998887544 8888888 4330 0
Q ss_pred ------------ccCHH-----HHHHHHHHHHHHHHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeE
Q psy7930 75 ------------VFSQA-----EKEIMALDCHQFVESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPIT 128 (146)
Q Consensus 75 ------------~Ys~~-----E~~~M~~dI~~~~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vt 128 (146)
+|+.. ++. ..+=++.+.++||..+++=-.+.||+ .|.+.++++.++. +.|++
T Consensus 415 ~~~~~~~~~~~~v~~~gg~~~~~~~-~~~~~~~~~~~Gageil~t~id~DGt~~G~d~~l~~~v~~~~-~ipvi 486 (538)
T PLN02617 415 PGPNGEEYAWYQCTVKGGREGRPIG-AYELAKAVEELGAGEILLNCIDCDGQGKGFDIELVKLVSDAV-TIPVI 486 (538)
T ss_pred cCcCcccceEEEEEEecCcccCCCC-HHHHHHHHHhcCCCEEEEeeccccccccCcCHHHHHHHHhhC-CCCEE
Confidence 22211 111 12346777889999999999999986 7999998888764 45554
No 287
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=86.17 E-value=4.6 Score=34.13 Aligned_cols=88 Identities=16% Similarity=0.231 Sum_probs=55.7
Q ss_pred HHHHHH-cCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEE--EEEccCCC---CCccc---CHHHHHHHHHHHHHHH
Q psy7930 22 ALAAVR-GGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVF--VMIRVRAG---FDFVF---SQAEKEIMALDCHQFV 92 (146)
Q Consensus 22 a~~A~~-~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~--vMIRP~R~---gdF~Y---s~~E~~~M~~dI~~~~ 92 (146)
+....+ +||+=|-|=+ |. -....++.++ ..+|||+ +=+.|++- |+|.- ++++.+.+.++.+.+.
T Consensus 99 a~r~~~~aGa~aVkiEd-----g~-~~~~~I~al~-~agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~ 171 (264)
T PRK00311 99 AGRLMKEAGAHAVKLEG-----GE-EVAETIKRLV-ERGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALE 171 (264)
T ss_pred HHHHHHHhCCeEEEEcC-----cH-HHHHHHHHHH-HCCCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHH
Confidence 344445 8998887743 31 1123344333 2488873 33678322 34432 6788999999999999
Q ss_pred HcCCCEEEEeeecCCCCcCHHHHHHHHHHh
Q psy7930 93 ESGADGFVIGALTGEQEIDIEFIRQLKTII 122 (146)
Q Consensus 93 ~~GadG~VfG~L~~dg~iD~~~~~~Li~~a 122 (146)
++||+++|+=++.+ +..+++.+..
T Consensus 172 eAGA~~i~lE~v~~------~~~~~i~~~l 195 (264)
T PRK00311 172 EAGAFALVLECVPA------ELAKEITEAL 195 (264)
T ss_pred HCCCCEEEEcCCCH------HHHHHHHHhC
Confidence 99999999976632 4555555544
No 288
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=85.97 E-value=4.3 Score=35.58 Aligned_cols=82 Identities=22% Similarity=0.249 Sum_probs=51.0
Q ss_pred HHHHHHHHcCCCEEEecCCC-----------------CCCCCCC-----CHHHHHHHHhhCC--CcEEEEEccCCCCCcc
Q psy7930 20 ASALAAVRGGADRLELCAAL-----------------SEGGLTP-----TLGLYRVIKRLVL--VPVFVMIRVRAGFDFV 75 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l-----------------~~GGlTP-----S~g~i~~~~~~~~--ipv~vMIRP~R~gdF~ 75 (146)
+.|..|+++|+|-|||-.+- .-||--- ...+++.+++.++ .||-|=|+|-.+.+|.
T Consensus 148 ~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~ 227 (361)
T cd04747 148 RAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYT 227 (361)
T ss_pred HHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccc
Confidence 67888999999999998632 0133110 1357778888774 6676655551124554
Q ss_pred cC-HHHHHHHHHHHHHHHHcCCCEEEE
Q psy7930 76 FS-QAEKEIMALDCHQFVESGADGFVI 101 (146)
Q Consensus 76 Ys-~~E~~~M~~dI~~~~~~GadG~Vf 101 (146)
+. ..+.+.|.+=++.+.++|+|-|-+
T Consensus 228 ~~~g~~~~e~~~~~~~l~~~gvd~i~v 254 (361)
T cd04747 228 ARLADTPDELEALLAPLVDAGVDIFHC 254 (361)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 32 133445566667778889998755
No 289
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=85.96 E-value=4.5 Score=33.95 Aligned_cols=85 Identities=20% Similarity=0.341 Sum_probs=56.4
Q ss_pred HHHHHH-cCCCEEEecCCCCCCCCCCCHHHHHHHHh--hCCCcEE--EEEccCCCC----Cccc---CHHHHHHHHHHHH
Q psy7930 22 ALAAVR-GGADRLELCAALSEGGLTPTLGLYRVIKR--LVLVPVF--VMIRVRAGF----DFVF---SQAEKEIMALDCH 89 (146)
Q Consensus 22 a~~A~~-~GAdRIELc~~l~~GGlTPS~g~i~~~~~--~~~ipv~--vMIRP~R~g----dF~Y---s~~E~~~M~~dI~ 89 (146)
+....+ .||+=|-|=+ | ....+.++. ..+|||. +-+-| |.- +|.= ++++.+.+.++.+
T Consensus 96 a~r~~~~aGa~aVkiEd-----~----~~~~~~I~al~~agipV~gHiGL~p-q~~~~~gg~~~~grt~~~a~~~i~ra~ 165 (254)
T cd06557 96 AARLMKEAGADAVKLEG-----G----AEVAETIRALVDAGIPVMGHIGLTP-QSVNQLGGYKVQGKTEEEAERLLEDAL 165 (254)
T ss_pred HHHHHHHhCCeEEEEcC-----c----HHHHHHHHHHHHcCCCeeccccccc-eeeeccCCceeccCCHHHHHHHHHHHH
Confidence 344555 8999887743 3 233333333 2478865 45778 543 3322 6888999999999
Q ss_pred HHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHh
Q psy7930 90 QFVESGADGFVIGALTGEQEIDIEFIRQLKTII 122 (146)
Q Consensus 90 ~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a 122 (146)
.+.++||+++++=++. .+..+++.+..
T Consensus 166 a~~~AGA~~i~lE~v~------~~~~~~i~~~v 192 (254)
T cd06557 166 ALEEAGAFALVLECVP------AELAKEITEAL 192 (254)
T ss_pred HHHHCCCCEEEEcCCC------HHHHHHHHHhC
Confidence 9999999999997763 24556666554
No 290
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=85.83 E-value=15 Score=30.19 Aligned_cols=89 Identities=13% Similarity=0.145 Sum_probs=61.5
Q ss_pred CHHH-HHHHHHcCCCEEEecCCCCCC-CCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930 18 SVAS-ALAAVRGGADRLELCAALSEG-GLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG 95 (146)
Q Consensus 18 s~~~-a~~A~~~GAdRIELc~~l~~G-GlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G 95 (146)
++.+ |..-.+.||++|-+.+==..| |--|...+++++.+..++||.+ +|+.. |. +|++.+.++|
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~------gGGi~-s~-------~d~~~l~~~G 96 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASECFMPLCY------GGGIK-TL-------EQAKKIFSLG 96 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHhCCCCEEE------CCCCC-CH-------HHHHHHHHCC
Confidence 5544 455567799999877633333 5678999999999988899744 23221 11 5677778899
Q ss_pred CCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930 96 ADGFVIGALTGEQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 96 adG~VfG~L~~dg~iD~~~~~~Li~~a~ 123 (146)
++++++|.-. --|.+.++++.+..+
T Consensus 97 ~~~vvigs~~---~~~~~~~~~~~~~~~ 121 (258)
T PRK01033 97 VEKVSINTAA---LEDPDLITEAAERFG 121 (258)
T ss_pred CCEEEEChHH---hcCHHHHHHHHHHhC
Confidence 9999999532 124677888887764
No 291
>PRK09061 D-glutamate deacylase; Validated
Probab=85.83 E-value=20 Score=32.54 Aligned_cols=101 Identities=18% Similarity=0.125 Sum_probs=67.5
Q ss_pred HHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHh---hCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930 22 ALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKR---LVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG 98 (146)
Q Consensus 22 a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~---~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG 98 (146)
...|.+.||.-+-....+. .+. +.+.+..+.+ ..+.||.+.++- .+..-...|.+.+.+.++.+++.|+.
T Consensus 175 l~~al~~Ga~gis~~~~y~-p~~--~~~eL~~l~~~A~~~g~~v~~H~e~---~~~~~~~~e~~av~~~i~lA~~~G~r- 247 (509)
T PRK09061 175 LEQGLDEGALGIGIGAGYA-PGT--GHKEYLELARLAARAGVPTYTHVRY---LSNVDPRSSVDAYQELIAAAAETGAH- 247 (509)
T ss_pred HHHHHHCCCCEEecCCccC-CCC--CHHHHHHHHHHHHHcCCEEEEEecC---cccCCchhHHHHHHHHHHHHHHhCCC-
Confidence 3445578999988743322 233 3333333333 247888776664 22222467889999999999999987
Q ss_pred EEEeeecCCCCcCHHHHHHHHHHhC--CCCeEE
Q psy7930 99 FVIGALTGEQEIDIEFIRQLKTIIG--DRPITF 129 (146)
Q Consensus 99 ~VfG~L~~dg~iD~~~~~~Li~~a~--~~~vtF 129 (146)
+.+.=++..+.-+.+...++++.|+ ++++|+
T Consensus 248 v~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~ 280 (509)
T PRK09061 248 MHICHVNSTSLRDIDRCLALVEKAQAQGLDVTT 280 (509)
T ss_pred EEEEeeccCCcccHHHHHHHHHHHHHcCCcEEE
Confidence 7777888887778787778888775 666653
No 292
>KOG1606|consensus
Probab=85.77 E-value=1.4 Score=37.37 Aligned_cols=57 Identities=28% Similarity=0.307 Sum_probs=43.6
Q ss_pred ecCHHHHHHHHHcCCCEEEecCC-----CCCCCCC--CCHHHHHHHHhhCCCcEEEEEccCCCCCcc
Q psy7930 16 VDSVASALAAVRGGADRLELCAA-----LSEGGLT--PTLGLYRVIKRLVLVPVFVMIRVRAGFDFV 75 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~~-----l~~GGlT--PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~ 75 (146)
+-|.++|+.|+++||=-+=-... -+.||.. |...+|+++++.++||| |-+- |-|.|+
T Consensus 28 Vv~~eQA~iAE~aGACaVmalervPadiR~~GgV~RMsDP~mIKei~~aVsiPV--MAk~-RiGHFV 91 (296)
T KOG1606|consen 28 VVNAEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPRMIKEIKNAVSIPV--MAKV-RIGHFV 91 (296)
T ss_pred ecCHHHHHHHHhcCcceEeeeccCCHhHHhcCCeeecCCHHHHHHHHHhccchh--hhhh-hhhhhh
Confidence 46899999999999944322221 1467764 67889999999999998 7777 778897
No 293
>PRK02227 hypothetical protein; Provisional
Probab=85.63 E-value=20 Score=30.20 Aligned_cols=83 Identities=27% Similarity=0.238 Sum_probs=57.4
Q ss_pred eEEEecCHHHHHHHHHcCCCEEEecC--CCCCCCCCCCHHHHHHHHhhCC--CcEEEEEccCCCCCcccCHHHHHHHHHH
Q psy7930 12 LEVCVDSVASALAAVRGGADRLELCA--ALSEGGLTPTLGLYRVIKRLVL--VPVFVMIRVRAGFDFVFSQAEKEIMALD 87 (146)
Q Consensus 12 lEvcv~s~~~a~~A~~~GAdRIELc~--~l~~GGlTPS~g~i~~~~~~~~--ipv~vMIRP~R~gdF~Ys~~E~~~M~~d 87 (146)
|=|-+-|.++|..|.++|||=|-+-. .=++|++. ..+++++++.++ .||.. --|||-|.+.++.. -
T Consensus 3 lLvSvr~~eEA~~Al~~GaDiIDvK~P~~GaLGA~~--p~vir~Iv~~~~~~~pvSA-----tiGD~p~~p~~~~~---a 72 (238)
T PRK02227 3 LLVSVRNLEEALEALAGGADIIDVKNPKEGSLGANF--PWVIREIVAAVPGRKPVSA-----TIGDVPYKPGTISL---A 72 (238)
T ss_pred eeeccCCHHHHHHHHhcCCCEEEccCCCCCCCCCCC--HHHHHHHHHHhCCCCCcee-----eccCCCCCchHHHH---H
Confidence 33668899999999999999999875 23455554 467888888764 45443 35788888765554 3
Q ss_pred HHHHHHcCCCEEEEeee
Q psy7930 88 CHQFVESGADGFVIGAL 104 (146)
Q Consensus 88 I~~~~~~GadG~VfG~L 104 (146)
+..+...|+|=|=+|.-
T Consensus 73 a~~~a~~GvDyVKvGl~ 89 (238)
T PRK02227 73 ALGAAATGADYVKVGLY 89 (238)
T ss_pred HHHHHhhCCCEEEEcCC
Confidence 44455667776666654
No 294
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=85.57 E-value=13 Score=31.28 Aligned_cols=84 Identities=26% Similarity=0.242 Sum_probs=57.8
Q ss_pred eeEEEecCHHHHHHHHHcCCCEEEecC--CCCCCCCCCCHHHHHHHHhhCC--CcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930 11 TLEVCVDSVASALAAVRGGADRLELCA--ALSEGGLTPTLGLYRVIKRLVL--VPVFVMIRVRAGFDFVFSQAEKEIMAL 86 (146)
Q Consensus 11 ~lEvcv~s~~~a~~A~~~GAdRIELc~--~l~~GGlTPS~g~i~~~~~~~~--ipv~vMIRP~R~gdF~Ys~~E~~~M~~ 86 (146)
+|=+-+-|.++|..|.++|||=|-|-. .=++|.+ +..+++++++.++ .||..- -||+.|.+..+..
T Consensus 2 ~lLvSv~~~~EA~~a~~~gaDiID~K~P~~GaLGA~--~~~vi~~i~~~~~~~~pvSAt-----iGDlp~~p~~~~~--- 71 (235)
T PF04476_consen 2 KLLVSVRNVEEAEEALAGGADIIDLKNPAEGALGAL--FPWVIREIVAAVPGRKPVSAT-----IGDLPMKPGTASL--- 71 (235)
T ss_pred ceeecCCCHHHHHHHHhCCCCEEEccCCCCCCCCCC--CHHHHHHHHHHcCCCCceEEE-----ecCCCCCchHHHH---
Confidence 344678899999999999999999985 3355654 5778899988764 555543 4677777655442
Q ss_pred HHHHHHHcCCCEEEEeee
Q psy7930 87 DCHQFVESGADGFVIGAL 104 (146)
Q Consensus 87 dI~~~~~~GadG~VfG~L 104 (146)
-.......|+|=|=+|.-
T Consensus 72 aa~~~a~~GvdyvKvGl~ 89 (235)
T PF04476_consen 72 AALGAAATGVDYVKVGLF 89 (235)
T ss_pred HHHHHHhcCCCEEEEecC
Confidence 222233457777777754
No 295
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=85.56 E-value=7.3 Score=32.64 Aligned_cols=87 Identities=25% Similarity=0.266 Sum_probs=62.4
Q ss_pred HHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEE
Q psy7930 21 SALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFV 100 (146)
Q Consensus 21 ~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~V 100 (146)
=|++|+++||--|-.. +..-++++++.+++||.=+|.- |+-=|+-=+.--..|++.+.+.|++=+.
T Consensus 38 mA~Aa~~gGAvgiR~~----------gv~dIkai~~~v~vPIIGIiKr----d~~~s~v~ITptlkeVd~L~~~Ga~IIA 103 (229)
T COG3010 38 MALAAEQGGAVGIRIE----------GVEDIKAIRAVVDVPIIGIIKR----DYPDSPVRITPTLKEVDALAEAGADIIA 103 (229)
T ss_pred HHHHHHhCCcceEeec----------chhhHHHHHhhCCCCeEEEEec----CCCCCCceecccHHHHHHHHHCCCcEEE
Confidence 4788999999655433 5778999999999999988864 2323333345567899999999999999
Q ss_pred EeeecCCCCcCHHHHHHHHHHhC
Q psy7930 101 IGALTGEQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 101 fG~L~~dg~iD~~~~~~Li~~a~ 123 (146)
|=+-...- -|- .+++|++..+
T Consensus 104 ~DaT~R~R-P~~-~~~~~i~~~k 124 (229)
T COG3010 104 FDATDRPR-PDG-DLEELIARIK 124 (229)
T ss_pred eecccCCC-Ccc-hHHHHHHHhh
Confidence 98755432 332 5567777654
No 296
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=85.50 E-value=6.7 Score=35.06 Aligned_cols=93 Identities=18% Similarity=0.239 Sum_probs=61.0
Q ss_pred cCHHHHHHHHHcCCCEEEecCCCCCCCCCCC-HHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930 17 DSVASALAAVRGGADRLELCAALSEGGLTPT-LGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES 94 (146)
Q Consensus 17 ~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS-~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~ 94 (146)
++++.+.+..++|+|-|++-.+ .|-++. ...++.+++.. ++||.+ +.+-|. ++.+.+.++
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a---~g~~~~~~~~i~~i~~~~~~~~vi~--------G~v~t~-------~~a~~l~~a 285 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSS---HGHSIYVIDSIKEIKKTYPDLDIIA--------GNVATA-------EQAKALIDA 285 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECC---CCcHhHHHHHHHHHHHhCCCCCEEE--------EeCCCH-------HHHHHHHHh
Confidence 4578899999999999999764 245553 34677777663 677654 244454 456677889
Q ss_pred CCCEEEEee------ecC----CCCcCHHHHHHHHHHhC--CCCe
Q psy7930 95 GADGFVIGA------LTG----EQEIDIEFIRQLKTIIG--DRPI 127 (146)
Q Consensus 95 GadG~VfG~------L~~----dg~iD~~~~~~Li~~a~--~~~v 127 (146)
|||+|.+|. .|. -|--...++.++.++++ +.|+
T Consensus 286 Gad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpv 330 (450)
T TIGR01302 286 GADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPV 330 (450)
T ss_pred CCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeE
Confidence 999998884 332 13334566666776664 4444
No 297
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=85.46 E-value=5.2 Score=31.68 Aligned_cols=93 Identities=19% Similarity=0.304 Sum_probs=59.6
Q ss_pred HHHHHHHHcCCCEEEecCCCC---CCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930 20 ASALAAVRGGADRLELCAALS---EGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG 95 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~---~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G 95 (146)
.++..|.+.|||=|+.+-+.. .|-..-....+.++++.. ++|+.|++-. +.. ++++ +..=.+.+.++|
T Consensus 73 ~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~--~~l---~~~~---i~~a~ria~e~G 144 (203)
T cd00959 73 AEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILET--GLL---TDEE---IIKACEIAIEAG 144 (203)
T ss_pred HHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEec--CCC---CHHH---HHHHHHHHHHhC
Confidence 568889999999999998764 344444566777777765 5888885443 332 4444 445567899999
Q ss_pred CCEEEEe--eecCCCCcCHHHHHHHHHHh
Q psy7930 96 ADGFVIG--ALTGEQEIDIEFIRQLKTII 122 (146)
Q Consensus 96 adG~VfG--~L~~dg~iD~~~~~~Li~~a 122 (146)
||-|=.. ... +.-..+..+.+.+.+
T Consensus 145 aD~IKTsTG~~~--~~at~~~v~~~~~~~ 171 (203)
T cd00959 145 ADFIKTSTGFGP--GGATVEDVKLMKEAV 171 (203)
T ss_pred CCEEEcCCCCCC--CCCCHHHHHHHHHHh
Confidence 9977665 432 223444444444444
No 298
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=85.46 E-value=19 Score=29.48 Aligned_cols=99 Identities=14% Similarity=0.093 Sum_probs=54.3
Q ss_pred HHHHHHHHHcCCCEEEecCCCCCCCCCCCH----HHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHH
Q psy7930 19 VASALAAVRGGADRLELCAALSEGGLTPTL----GLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVE 93 (146)
Q Consensus 19 ~~~a~~A~~~GAdRIELc~~l~~GGlTPS~----g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~ 93 (146)
++.+..+.+.|++|+-+.+ +|..|.. ..++.+++.. +..+.+.+.+ | +. + .+.++.+++
T Consensus 68 ~~~~~~~~~~g~~~~~l~~----~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~---g-~~-~-------~e~l~~Lk~ 131 (296)
T TIGR00433 68 LEEARKAKAAGATRFCLVA----SGRGPKDREFMEYVEAMVQIVEEMGLKTCATL---G-LL-D-------PEQAKRLKD 131 (296)
T ss_pred HHHHHHHHHCCCCEEEEEE----ecCCCChHHHHHHHHHHHHHHHhCCCeEEecC---C-CC-C-------HHHHHHHHH
Confidence 3444455678999988765 4555553 3444444321 2334445554 3 22 2 356778899
Q ss_pred cCCCEEEEeeecCC-------CCcCHHHHHHHHHHhC--CCCeEEeecc
Q psy7930 94 SGADGFVIGALTGE-------QEIDIEFIRQLKTIIG--DRPITFHRAF 133 (146)
Q Consensus 94 ~GadG~VfG~L~~d-------g~iD~~~~~~Li~~a~--~~~vtFHRAF 133 (146)
+|++.+-+|+=..+ +.-+.+...+.++.++ |+++..|--|
T Consensus 132 aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~ 180 (296)
T TIGR00433 132 AGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIF 180 (296)
T ss_pred cCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEE
Confidence 99999999954211 1123333333333333 6777777655
No 299
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=85.39 E-value=5.8 Score=34.78 Aligned_cols=91 Identities=21% Similarity=0.227 Sum_probs=59.5
Q ss_pred eEEEecCHHHHHHHHHcCCCEEEecCCC-CCC-CCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930 12 LEVCVDSVASALAAVRGGADRLELCAAL-SEG-GLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH 89 (146)
Q Consensus 12 lEvcv~s~~~a~~A~~~GAdRIELc~~l-~~G-GlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~ 89 (146)
+=+|.+|+..+++.++.|+-=+|=-.++ ..| |++ ....++.+++..++|| ++=- | .=++ .|..
T Consensus 201 ~~yc~~d~~~a~~l~~~g~~avmPl~~pIGsg~gv~-~p~~i~~~~e~~~vpV--ivdA---G--Ig~~-------sda~ 265 (326)
T PRK11840 201 MVYCSDDPIAAKRLEDAGAVAVMPLGAPIGSGLGIQ-NPYTIRLIVEGATVPV--LVDA---G--VGTA-------SDAA 265 (326)
T ss_pred EEEeCCCHHHHHHHHhcCCEEEeeccccccCCCCCC-CHHHHHHHHHcCCCcE--EEeC---C--CCCH-------HHHH
Confidence 4679999999999999999666653333 322 444 6788888888877675 4422 2 1111 6788
Q ss_pred HHHHcCCCEEEE--eeecCCCCcCHHHHHHHHH
Q psy7930 90 QFVESGADGFVI--GALTGEQEIDIEFIRQLKT 120 (146)
Q Consensus 90 ~~~~~GadG~Vf--G~L~~dg~iD~~~~~~Li~ 120 (146)
.+-++|+||+-+ |+.+. =|...|.+-..
T Consensus 266 ~AmelGadgVL~nSaIa~a---~dPv~Ma~A~~ 295 (326)
T PRK11840 266 VAMELGCDGVLMNTAIAEA---KNPVLMARAMK 295 (326)
T ss_pred HHHHcCCCEEEEcceeccC---CCHHHHHHHHH
Confidence 899999999754 34333 35555554443
No 300
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=85.23 E-value=1.5 Score=37.03 Aligned_cols=88 Identities=14% Similarity=-0.015 Sum_probs=55.0
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhCC-CcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCC
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLVL-VPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGA 96 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~~-ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Ga 96 (146)
+-+..+.+.|||||-||+. .|-+||. +.+++.+++..+ +|+.+---- .-| +. ..-...+.++|+
T Consensus 159 ~~~~~~~~~G~d~i~l~DT--~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn-~~G--------la--~AN~laA~~aG~ 225 (287)
T PRK05692 159 DVAERLFALGCYEISLGDT--IGVGTPGQVRAVLEAVLAEFPAERLAGHFHD-TYG--------QA--LANIYASLEEGI 225 (287)
T ss_pred HHHHHHHHcCCcEEEeccc--cCccCHHHHHHHHHHHHHhCCCCeEEEEecC-CCC--------cH--HHHHHHHHHhCC
Confidence 3456788899999999994 7888994 778888888775 777665544 222 11 123344567788
Q ss_pred CEE---EEeeec------CCCCcCHHHHHHHHH
Q psy7930 97 DGF---VIGALT------GEQEIDIEFIRQLKT 120 (146)
Q Consensus 97 dG~---VfG~L~------~dg~iD~~~~~~Li~ 120 (146)
+-| +-|.=- .-|..+.+.+-..++
T Consensus 226 ~~id~s~~GlGecpfa~g~aGN~~~E~lv~~L~ 258 (287)
T PRK05692 226 TVFDASVGGLGGCPYAPGASGNVATEDVLYMLH 258 (287)
T ss_pred CEEEEEccccCCCCCCCCccccccHHHHHHHHH
Confidence 754 222101 245666665555554
No 301
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=84.95 E-value=4.8 Score=36.87 Aligned_cols=80 Identities=15% Similarity=0.114 Sum_probs=56.7
Q ss_pred eEEE---ecCHHHHHHHHHcCCCEEEecCC--------CCCCCCCCCHHHHHHHHhhC-------C--CcEEEEEccCCC
Q psy7930 12 LEVC---VDSVASALAAVRGGADRLELCAA--------LSEGGLTPTLGLYRVIKRLV-------L--VPVFVMIRVRAG 71 (146)
Q Consensus 12 lEvc---v~s~~~a~~A~~~GAdRIELc~~--------l~~GGlTPS~g~i~~~~~~~-------~--ipv~vMIRP~R~ 71 (146)
+.|. |.+.+++..+.++|||-|-..-. ...|.-.|....+..+.+.. + +||. ..
T Consensus 285 ~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~vi------ad 358 (502)
T PRK07107 285 VKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPIC------SD 358 (502)
T ss_pred ceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEE------Ec
Confidence 4454 46678899999999999977432 23444456666666665532 4 6643 24
Q ss_pred CCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeec
Q psy7930 72 FDFVFSQAEKEIMALDCHQFVESGADGFVIGALT 105 (146)
Q Consensus 72 gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~ 105 (146)
|++.|+ .||..+..+|||.+-+|=+=
T Consensus 359 gGir~~--------gdi~KAla~GA~~vm~G~~~ 384 (502)
T PRK07107 359 GGIVYD--------YHMTLALAMGADFIMLGRYF 384 (502)
T ss_pred CCCCch--------hHHHHHHHcCCCeeeeChhh
Confidence 668888 78999999999999999663
No 302
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=84.92 E-value=11 Score=31.42 Aligned_cols=97 Identities=16% Similarity=0.158 Sum_probs=57.4
Q ss_pred HHHHHHcCCCEEEecCCCCCCCCCCC-HHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930 22 ALAAVRGGADRLELCAALSEGGLTPT-LGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG 98 (146)
Q Consensus 22 a~~A~~~GAdRIELc~~l~~GGlTPS-~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG 98 (146)
+..-.+.|.+.||+=. ++..|. ...++.+++.. +.++.++.|+ +.-++. .+. ..+++.+++.|++.
T Consensus 26 ~~~L~~~Gv~~IE~G~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~-~~~-----~~~~~~a~~~g~~~ 94 (273)
T cd07941 26 ARKLDELGVDYIEGGW----PGSNPKDTEFFARAKKLKLKHAKLAAFGST-RRAGVK-AEE-----DPNLQALLEAGTPV 94 (273)
T ss_pred HHHHHHcCCCEEEecC----CcCCHHHHHHHHHHHHcCCCCcEEEEEecc-cccCCC-ccc-----hHHHHHHHhCCCCE
Confidence 3445678999999922 233443 33455554432 5788888888 554443 111 15677788889998
Q ss_pred EEEeeecCCC----------CcCHHHHHHHHHHhC--CCCeEE
Q psy7930 99 FVIGALTGEQ----------EIDIEFIRQLKTIIG--DRPITF 129 (146)
Q Consensus 99 ~VfG~L~~dg----------~iD~~~~~~Li~~a~--~~~vtF 129 (146)
+.+-.=..|. +=+.+.+.++++.|+ |+.+.|
T Consensus 95 i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~ 137 (273)
T cd07941 95 VTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIF 137 (273)
T ss_pred EEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 7765433322 113445566677665 666665
No 303
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=84.89 E-value=22 Score=30.04 Aligned_cols=108 Identities=19% Similarity=0.157 Sum_probs=63.9
Q ss_pred cceeEEEecCHHHHHHHHHcCCCEEEecC-CCC---CC---CCCCCHH-HH---HHHHhhCCCc-EEEEEccCCCCCccc
Q psy7930 9 KTTLEVCVDSVASALAAVRGGADRLELCA-ALS---EG---GLTPTLG-LY---RVIKRLVLVP-VFVMIRVRAGFDFVF 76 (146)
Q Consensus 9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~-~l~---~G---GlTPS~g-~i---~~~~~~~~ip-v~vMIRP~R~gdF~Y 76 (146)
.++.=..+.+..+|+.++++|.|=| |.. ++. .| +..-|.. ++ +.+.+.++.| |.+=+ | .|+|.-
T Consensus 15 ~~i~~~tayD~~sArl~e~aG~d~i-~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~-p--fg~y~~ 90 (264)
T PRK00311 15 EKIVMLTAYDYPFAKLFDEAGVDVI-LVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADM-P--FGSYQA 90 (264)
T ss_pred CCEEEEeCCCHHHHHHHHHcCCCEE-EECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeC-C--CCCccC
Confidence 3566678899999999999999999 554 221 22 1222333 33 3334445665 44412 6 455544
Q ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeE
Q psy7930 77 SQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPIT 128 (146)
Q Consensus 77 s~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vt 128 (146)
|. -+...+-++.+++.||+|+=+ +||.--.+.++.+++ .+.||.
T Consensus 91 ~~--~~av~~a~r~~~~aGa~aVki----Edg~~~~~~I~al~~--agIpV~ 134 (264)
T PRK00311 91 SP--EQALRNAGRLMKEAGAHAVKL----EGGEEVAETIKRLVE--RGIPVM 134 (264)
T ss_pred CH--HHHHHHHHHHHHHhCCeEEEE----cCcHHHHHHHHHHHH--CCCCEe
Confidence 43 345667788888899999876 344322344444443 266664
No 304
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=84.76 E-value=5 Score=35.44 Aligned_cols=80 Identities=15% Similarity=0.151 Sum_probs=60.2
Q ss_pred eEEEec---CHHHHHHHHHcCCCEEE-------ecCCCCC-CCCCCCHHHHHHHHhhC---CCcEEEEEccCCCCCcccC
Q psy7930 12 LEVCVD---SVASALAAVRGGADRLE-------LCAALSE-GGLTPTLGLYRVIKRLV---LVPVFVMIRVRAGFDFVFS 77 (146)
Q Consensus 12 lEvcv~---s~~~a~~A~~~GAdRIE-------Lc~~l~~-GGlTPS~g~i~~~~~~~---~ipv~vMIRP~R~gdF~Ys 77 (146)
++|++. +.+++..+.++|||-|- .|..=.. |--.|....+..+.+.. ++||. ..|++.|+
T Consensus 151 ~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VI------aDGGIr~~ 224 (343)
T TIGR01305 151 HTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHII------SDGGCTCP 224 (343)
T ss_pred CeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEE------EcCCcCch
Confidence 566655 67999999999999887 5654344 44449888888887765 45553 24568888
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeeec
Q psy7930 78 QAEKEIMALDCHQFVESGADGFVIGALT 105 (146)
Q Consensus 78 ~~E~~~M~~dI~~~~~~GadG~VfG~L~ 105 (146)
.||..+..+|||.+-+|-|-
T Consensus 225 --------gDI~KALA~GAd~VMlG~ll 244 (343)
T TIGR01305 225 --------GDVAKAFGAGADFVMLGGMF 244 (343)
T ss_pred --------hHHHHHHHcCCCEEEECHhh
Confidence 78999999999999999664
No 305
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=84.69 E-value=23 Score=29.91 Aligned_cols=88 Identities=22% Similarity=0.248 Sum_probs=67.4
Q ss_pred HHHHHHHHHcCCCEEEecC-CCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930 19 VASALAAVRGGADRLELCA-ALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD 97 (146)
Q Consensus 19 ~~~a~~A~~~GAdRIELc~-~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad 97 (146)
.+.|..=++.||.++.|.+ +=+..|-.-....++++.+.+++||.| ||+-.= .++++.+.++|++
T Consensus 34 ~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i~~~~~~~vQv------GGGIRs--------~~~v~~ll~~G~~ 99 (241)
T COG0106 34 LEVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEILEATDVPVQV------GGGIRS--------LEDVEALLDAGVA 99 (241)
T ss_pred HHHHHHHHHcCCcEEEEeeccccccCCcccHHHHHHHHHhCCCCEEe------eCCcCC--------HHHHHHHHHCCCC
Confidence 4666677789999999997 323445566779999999999999876 443321 2678889999999
Q ss_pred EEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930 98 GFVIGALTGEQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 98 G~VfG~L~~dg~iD~~~~~~Li~~a~ 123 (146)
-+++|-.. --|.+.++++++.-+
T Consensus 100 rViiGt~a---v~~p~~v~~~~~~~g 122 (241)
T COG0106 100 RVIIGTAA---VKNPDLVKELCEEYG 122 (241)
T ss_pred EEEEecce---ecCHHHHHHHHHHcC
Confidence 99999655 568888888888776
No 306
>TIGR00035 asp_race aspartate racemase.
Probab=84.57 E-value=1.4 Score=35.52 Aligned_cols=68 Identities=19% Similarity=0.206 Sum_probs=49.1
Q ss_pred CCCCCC--CHHHHHHHHhhC-------CCcEEEEEccCCCCCc---cc--C-HHHHHHHHHHHHHHHHcCCCEEEEeeec
Q psy7930 41 EGGLTP--TLGLYRVIKRLV-------LVPVFVMIRVRAGFDF---VF--S-QAEKEIMALDCHQFVESGADGFVIGALT 105 (146)
Q Consensus 41 ~GGlTP--S~g~i~~~~~~~-------~ipv~vMIRP~R~gdF---~Y--s-~~E~~~M~~dI~~~~~~GadG~VfG~L~ 105 (146)
.||+.| +..+++.+.+.+ .+|+.++-.| .-.|. .. + ++=...|.+.++.+.+.|+|-+|++|-|
T Consensus 7 iGGmgp~at~~~~~~i~~~~~a~~d~~~~~~i~~~~~-~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g~d~iviaCNT 85 (229)
T TIGR00035 7 LGGMGPLATAELFRRINEKTKAKRDQEHPAEVLFNNP-NIPDRTAYILGRGEDRPRPILIDIAVKLENAGADFIIMPCNT 85 (229)
T ss_pred ecCcCHHHHHHHHHHHHHHhHHhcCCCCCceeeeeCC-CHHHHHHHHhcCCcchHHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 489999 456677666543 4788888887 44332 12 1 2356678899999999999999999999
Q ss_pred CCCC
Q psy7930 106 GEQE 109 (146)
Q Consensus 106 ~dg~ 109 (146)
....
T Consensus 86 ah~~ 89 (229)
T TIGR00035 86 AHKF 89 (229)
T ss_pred HHHH
Confidence 7654
No 307
>PRK06256 biotin synthase; Validated
Probab=84.53 E-value=11 Score=31.74 Aligned_cols=66 Identities=20% Similarity=0.238 Sum_probs=39.0
Q ss_pred HHHHHHcCCCEEEecCCCCCCCCCCCHH-------HHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930 22 ALAAVRGGADRLELCAALSEGGLTPTLG-------LYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES 94 (146)
Q Consensus 22 a~~A~~~GAdRIELc~~l~~GGlTPS~g-------~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~ 94 (146)
+..+.+.|+.|+-|.+ ||..|+.. +++.+++. ..+.+.+.. | . -++ +.++.++++
T Consensus 100 ~~~~~~~g~~~~~l~~----~g~~p~~~~~~~~~e~i~~i~~~--~~i~~~~~~---g-~-l~~-------e~l~~Lkea 161 (336)
T PRK06256 100 AKEAIEEGAGTFCIVA----SGRGPSGKEVDQVVEAVKAIKEE--TDLEICACL---G-L-LTE-------EQAERLKEA 161 (336)
T ss_pred HHHHHHCCCCEEEEEe----cCCCCCchHHHHHHHHHHHHHhc--CCCcEEecC---C-c-CCH-------HHHHHHHHh
Confidence 4445667999988875 56666542 33333333 334444444 2 1 222 445678889
Q ss_pred CCCEEEEeeec
Q psy7930 95 GADGFVIGALT 105 (146)
Q Consensus 95 GadG~VfG~L~ 105 (146)
|++.+.+|+=+
T Consensus 162 G~~~v~~~lEt 172 (336)
T PRK06256 162 GVDRYNHNLET 172 (336)
T ss_pred CCCEEecCCcc
Confidence 99999887543
No 308
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=84.33 E-value=25 Score=30.04 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=67.3
Q ss_pred cCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhh------CCCcEEEEEccCCCCC--------cccC-HHHH
Q psy7930 17 DSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRL------VLVPVFVMIRVRAGFD--------FVFS-QAEK 81 (146)
Q Consensus 17 ~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~------~~ipv~vMIRP~R~gd--------F~Ys-~~E~ 81 (146)
.+++.+..|.+.|.+-|=.= |-.-|=-.-++..++. .++||-.-|-- -+|. =.|| ++|.
T Consensus 85 ~~~e~i~~Ai~~GftSVM~D-----gS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~-vgg~ed~~~~~~~~~T~pe~a 158 (283)
T PRK07998 85 KTFEDVKQAVRAGFTSVMID-----GAALPFEENIAFTKEAVDFAKSYGVPVEAELGA-ILGKEDDHVSEADCKTEPEKV 158 (283)
T ss_pred CCHHHHHHHHHcCCCEEEEe-----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecc-CCCccccccccccccCCHHHH
Confidence 47899999999999888762 2222322344444432 48888777754 3321 1243 3333
Q ss_pred HHHHHHHHHHHHcCCCEEEEeeecCCC-----CcCHHHHHHHHHHhCCCCeEEeec
Q psy7930 82 EIMALDCHQFVESGADGFVIGALTGEQ-----EIDIEFIRQLKTIIGDRPITFHRA 132 (146)
Q Consensus 82 ~~M~~dI~~~~~~GadG~VfG~L~~dg-----~iD~~~~~~Li~~a~~~~vtFHRA 132 (146)
.+.+++.|+|-+-+.+=|..| .||.++++++.+.. +.|+++|=.
T Consensus 159 ------~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~-~vPLVlHGg 207 (283)
T PRK07998 159 ------KDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVS-PVPLVIHGG 207 (283)
T ss_pred ------HHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhC-CCCEEEeCC
Confidence 445567899977776655444 58999999997765 899999954
No 309
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=84.06 E-value=9.4 Score=33.35 Aligned_cols=64 Identities=28% Similarity=0.325 Sum_probs=43.8
Q ss_pred HHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930 22 ALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG 98 (146)
Q Consensus 22 a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG 98 (146)
+..+.+.||+||-||+. .|.+||. ..+++.+++..++|+-+.--- .- .+.. .-...+.++||+-
T Consensus 151 ~~~~~~~Ga~~I~l~DT--~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hn-d~--------GlA~--AN~laAv~aGa~~ 216 (378)
T PRK11858 151 AKAAEEAGADRVRFCDT--VGILDPFTMYELVKELVEAVDIPIEVHCHN-DF--------GMAT--ANALAGIEAGAKQ 216 (378)
T ss_pred HHHHHhCCCCEEEEecc--CCCCCHHHHHHHHHHHHHhcCCeEEEEecC-Cc--------CHHH--HHHHHHHHcCCCE
Confidence 45678899999999995 5999994 678888888777777655443 21 2222 3344455688863
No 310
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=83.96 E-value=11 Score=33.96 Aligned_cols=89 Identities=18% Similarity=0.191 Sum_probs=54.8
Q ss_pred CHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCC
Q psy7930 18 SVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGA 96 (146)
Q Consensus 18 s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Ga 96 (146)
+.+.+....++|+|-|-+=+. .|--..-..+++.+++.. +++|.+ . .+-|. ++.+.+.++|+
T Consensus 154 ~~~~v~~lv~aGvDvI~iD~a--~g~~~~~~~~v~~ik~~~p~~~vi~---g-----~V~T~-------e~a~~l~~aGa 216 (404)
T PRK06843 154 TIERVEELVKAHVDILVIDSA--HGHSTRIIELVKKIKTKYPNLDLIA---G-----NIVTK-------EAALDLISVGA 216 (404)
T ss_pred HHHHHHHHHhcCCCEEEEECC--CCCChhHHHHHHHHHhhCCCCcEEE---E-----ecCCH-------HHHHHHHHcCC
Confidence 347889999999999988443 232233456788888765 555432 1 12222 45666778999
Q ss_pred CEEEEeeec----------CCCCcCHHHHHHHHHHhC
Q psy7930 97 DGFVIGALT----------GEQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 97 dG~VfG~L~----------~dg~iD~~~~~~Li~~a~ 123 (146)
|+|.+|.=- .-|.-+..++..+.+.++
T Consensus 217 D~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~ 253 (404)
T PRK06843 217 DCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCK 253 (404)
T ss_pred CEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHh
Confidence 999998521 112235566656666554
No 311
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=83.82 E-value=3.3 Score=35.73 Aligned_cols=103 Identities=18% Similarity=0.213 Sum_probs=61.8
Q ss_pred HHHHHHHHcCCCEEEecCCC-----------------CCCCCCC------CHHHHHHHHhhCCCcEEEEEccCCCCCccc
Q psy7930 20 ASALAAVRGGADRLELCAAL-----------------SEGGLTP------TLGLYRVIKRLVLVPVFVMIRVRAGFDFVF 76 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l-----------------~~GGlTP------S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Y 76 (146)
+.|..|+++|.|=|||..+- .-||- + ...+++.+++.++.||.+=|+| .+|..
T Consensus 146 ~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGs-lenR~Rf~~eii~~ir~~~~~~v~vRis~---~d~~~ 221 (337)
T PRK13523 146 QAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGS-PENRYRFLREIIDAVKEVWDGPLFVRISA---SDYHP 221 (337)
T ss_pred HHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCC-HHHHHHHHHHHHHHHHHhcCCCeEEEecc---cccCC
Confidence 67888999999999998641 11441 1 1347788888777776554444 45554
Q ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEeeec-----CC--CCcCHHHHHHHHHHhCCCCe
Q psy7930 77 SQAEKEIMALDCHQFVESGADGFVIGALT-----GE--QEIDIEFIRQLKTIIGDRPI 127 (146)
Q Consensus 77 s~~E~~~M~~dI~~~~~~GadG~VfG~L~-----~d--g~iD~~~~~~Li~~a~~~~v 127 (146)
...+.+.+.+=++.+.+.|+|-|-+-.=+ .+ ...+.+..+++.+.. +.||
T Consensus 222 ~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~-~ipV 278 (337)
T PRK13523 222 GGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHA-NIAT 278 (337)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhc-CCcE
Confidence 33345556666677778899988764311 01 112556666655543 3454
No 312
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=83.81 E-value=14 Score=32.61 Aligned_cols=85 Identities=15% Similarity=0.092 Sum_probs=56.9
Q ss_pred cCHHHHHHHHHcCCCEEEecCC-CCCCCCCCC-----HHHHHHHHhhCCCcEEE-EEc----c-CCCCCcccCHH-----
Q psy7930 17 DSVASALAAVRGGADRLELCAA-LSEGGLTPT-----LGLYRVIKRLVLVPVFV-MIR----V-RAGFDFVFSQA----- 79 (146)
Q Consensus 17 ~s~~~a~~A~~~GAdRIELc~~-l~~GGlTPS-----~g~i~~~~~~~~ipv~v-MIR----P-~R~gdF~Ys~~----- 79 (146)
+-.+.+..+.+.|++-||+-.. +-.-+.+++ ..-+++..+..++.|.. .++ | -..|+|.-.+.
T Consensus 33 ~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g~las~d~~vR~~ 112 (382)
T TIGR02631 33 DPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDGGFTSNDRSVRRY 112 (382)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCccccCCCCCCCCHHHHHH
Confidence 4456677799999999999742 333455443 34667777777877543 222 1 02356766544
Q ss_pred HHHHHHHHHHHHHHcCCCEEEE
Q psy7930 80 EKEIMALDCHQFVESGADGFVI 101 (146)
Q Consensus 80 E~~~M~~dI~~~~~~GadG~Vf 101 (146)
.++.+++-|+.++++|++-||+
T Consensus 113 ai~~~kraId~A~eLGa~~v~v 134 (382)
T TIGR02631 113 ALRKVLRNMDLGAELGAETYVV 134 (382)
T ss_pred HHHHHHHHHHHHHHhCCCEEEE
Confidence 3677899999999999997765
No 313
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=83.67 E-value=16 Score=30.63 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=15.3
Q ss_pred HHHHHHHHcCCCEEEEee
Q psy7930 86 LDCHQFVESGADGFVIGA 103 (146)
Q Consensus 86 ~dI~~~~~~GadG~VfG~ 103 (146)
++++.+.+.||||||+|-
T Consensus 215 e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 215 EQIKQIKGWNINGIVIGS 232 (263)
T ss_pred HHHHHHHhcCCCEEEECH
Confidence 467778889999999994
No 314
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=83.52 E-value=16 Score=29.98 Aligned_cols=105 Identities=17% Similarity=-0.011 Sum_probs=64.7
Q ss_pred cCHHHHHHHHHcC----CCEEEecCCCCCC------CCCCC--HHHHHHHHhh---CCCcEEEEEccCCCCCcccCHHHH
Q psy7930 17 DSVASALAAVRGG----ADRLELCAALSEG------GLTPT--LGLYRVIKRL---VLVPVFVMIRVRAGFDFVFSQAEK 81 (146)
Q Consensus 17 ~s~~~a~~A~~~G----AdRIELc~~l~~G------GlTPS--~g~i~~~~~~---~~ipv~vMIRP~R~gdF~Ys~~E~ 81 (146)
.+.+++..|.+.| +++|-++..++.- |.|+. ...+..+.+. .+..|. +-| .-.+.++.+.+
T Consensus 70 ~~~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~--~~~~~~~~~~~ 145 (268)
T cd07940 70 AVKKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE--FSA--EDATRTDLDFL 145 (268)
T ss_pred CCHhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE--Eee--ecCCCCCHHHH
Confidence 5688899999999 9999998643211 33433 2323332222 244433 443 12233556555
Q ss_pred HHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC---C---CCeEEe
Q psy7930 82 EIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG---D---RPITFH 130 (146)
Q Consensus 82 ~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~---~---~~vtFH 130 (146)
..+ ++.+.++|++.|.+. +.-|....+.+.++++..+ + .++-||
T Consensus 146 ~~~---~~~~~~~G~~~i~l~--DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H 195 (268)
T cd07940 146 IEV---VEAAIEAGATTINIP--DTVGYLTPEEFGELIKKLKENVPNIKVPISVH 195 (268)
T ss_pred HHH---HHHHHHcCCCEEEEC--CCCCCCCHHHHHHHHHHHHHhCCCCceeEEEE
Confidence 555 455567899987554 7778888888888887764 2 677777
No 315
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=83.49 E-value=12 Score=32.07 Aligned_cols=99 Identities=19% Similarity=0.190 Sum_probs=55.5
Q ss_pred HHHHHHHcCCCEEEecCCCCCCCCCCC------HHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHH--------HH
Q psy7930 21 SALAAVRGGADRLELCAALSEGGLTPT------LGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEI--------MA 85 (146)
Q Consensus 21 ~a~~A~~~GAdRIELc~~l~~GGlTPS------~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~--------M~ 85 (146)
.+..+.+.|++|+=|. ||..|. ..+++.+++.. ++.+..| +..|+.. -.
T Consensus 87 ~a~~~~~~G~~~v~l~-----~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~~-----------~~~ei~~~~~~~g~~~~ 150 (351)
T TIGR03700 87 RVKEAYAPGATEVHIV-----GGLHPNLPFEWYLDMIRTLKEAYPDLHVKAF-----------TAVEIHHFSKISGLPTE 150 (351)
T ss_pred HHHHHHHCCCcEEEEe-----cCCCCCCCHHHHHHHHHHHHHHCCCceEEeC-----------CHHHHHHHHHHcCCCHH
Confidence 3666777899999886 566675 24666666554 3444443 2334331 12
Q ss_pred HHHHHHHHcCCCEEE-EeeecC---------CCCcCHHHHHHHHHHhC--CCCeEEeecccC
Q psy7930 86 LDCHQFVESGADGFV-IGALTG---------EQEIDIEFIRQLKTIIG--DRPITFHRAFDV 135 (146)
Q Consensus 86 ~dI~~~~~~GadG~V-fG~L~~---------dg~iD~~~~~~Li~~a~--~~~vtFHRAFD~ 135 (146)
+.++.++++|+|.+- .|+=+- .+....+..-+.++.|+ |++++-+.-|-.
T Consensus 151 e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~Gl 212 (351)
T TIGR03700 151 EVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLYGH 212 (351)
T ss_pred HHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEeeC
Confidence 347888888888665 233110 12344444334444444 677777766654
No 316
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=83.49 E-value=6.9 Score=33.60 Aligned_cols=66 Identities=15% Similarity=0.167 Sum_probs=45.3
Q ss_pred HHHHHHcCCCEEEecCCCC-CCCCCCC---------HHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHH
Q psy7930 22 ALAAVRGGADRLELCAALS-EGGLTPT---------LGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQ 90 (146)
Q Consensus 22 a~~A~~~GAdRIELc~~l~-~GGlTPS---------~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~ 90 (146)
+..++++|++-|.+=..-. ..|++|. +..+.++++.+ +|||.. -||= .|.++...|.
T Consensus 147 ~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~-----NGdI--~s~~da~~~l----- 214 (318)
T TIGR00742 147 VEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEI-----NGGI--KNSEQIKQHL----- 214 (318)
T ss_pred HHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEE-----ECCc--CCHHHHHHHH-----
Confidence 6778899999998876543 4566653 45677788877 788753 3664 4445555443
Q ss_pred HHHcCCCEEEEe
Q psy7930 91 FVESGADGFVIG 102 (146)
Q Consensus 91 ~~~~GadG~VfG 102 (146)
+ |+|||-+|
T Consensus 215 --~-g~dgVMig 223 (318)
T TIGR00742 215 --S-HVDGVMVG 223 (318)
T ss_pred --h-CCCEEEEC
Confidence 2 89999997
No 317
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=83.47 E-value=4.4 Score=34.73 Aligned_cols=69 Identities=23% Similarity=0.236 Sum_probs=50.0
Q ss_pred ecCHHHHHHHHHcCCCEEEecCCC-----CCCCCCC--CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930 16 VDSVASALAAVRGGADRLELCAAL-----SEGGLTP--TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDC 88 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~~l-----~~GGlTP--S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI 88 (146)
|.|.|+|..|+++||--+=-.... ..||..- .+..++++.+.++|||+.= . |=|.|+ +.
T Consensus 27 V~n~EQA~IAE~aGAvAVMaLervPaDiR~aGGVaRMaDp~~i~eim~aVsIPVMAK--v-RIGH~~-----------EA 92 (296)
T COG0214 27 VVNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIEEIMDAVSIPVMAK--V-RIGHFV-----------EA 92 (296)
T ss_pred ecCHHHHHHHHhcCceeEeehhhCcHHHHhccCccccCCHHHHHHHHHhcccceeee--e-ecchhH-----------HH
Confidence 578999999999999655333222 5688764 6789999999999998554 4 557675 34
Q ss_pred HHHHHcCCCE
Q psy7930 89 HQFVESGADG 98 (146)
Q Consensus 89 ~~~~~~GadG 98 (146)
+.+.++|+|=
T Consensus 93 ~iLealgVD~ 102 (296)
T COG0214 93 QILEALGVDM 102 (296)
T ss_pred HHHHHhCCCc
Confidence 5567788873
No 318
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=83.38 E-value=13 Score=27.98 Aligned_cols=81 Identities=19% Similarity=0.191 Sum_probs=51.6
Q ss_pred CCCCCCCCCCHHHHHHHHhhC-----CCcEEEEEc---cCCCCCcccCHH-HHHHHHHHHHHHHHcCCCEEEEeeecCCC
Q psy7930 38 ALSEGGLTPTLGLYRVIKRLV-----LVPVFVMIR---VRAGFDFVFSQA-EKEIMALDCHQFVESGADGFVIGALTGEQ 108 (146)
Q Consensus 38 ~l~~GGlTPS~g~i~~~~~~~-----~ipv~vMIR---P~R~gdF~Ys~~-E~~~M~~dI~~~~~~GadG~VfG~L~~dg 108 (146)
.+..||.||-..-++.+.+.+ .-++.++|- | ..++...... ..+.+.+.++.+++.|+.=+++|+=++--
T Consensus 77 ~~~~~g~T~~~~al~~a~~~l~~~~~~~~~iiliTDG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~igig~~~~ 155 (174)
T cd01454 77 ALSPGGNTRDGAAIRHAAERLLARPEKRKILLVISDGEP-NDLDYYEGNVFATEDALRAVIEARKLGIEVFGITIDRDAT 155 (174)
T ss_pred ccCCCCCCcHHHHHHHHHHHHhcCCCcCcEEEEEeCCCc-CcccccCcchhHHHHHHHHHHHHHhCCcEEEEEEecCccc
Confidence 455688899888887776654 345666663 4 3332221222 34555666888899999999999866544
Q ss_pred CcCHHHHHHHH
Q psy7930 109 EIDIEFIRQLK 119 (146)
Q Consensus 109 ~iD~~~~~~Li 119 (146)
..|.+.++++.
T Consensus 156 ~~~~~~~~~~~ 166 (174)
T cd01454 156 TVDKEYLKNIF 166 (174)
T ss_pred cchHHHHHHhh
Confidence 46666666553
No 319
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=83.34 E-value=5.1 Score=36.87 Aligned_cols=101 Identities=13% Similarity=0.144 Sum_probs=64.6
Q ss_pred HHHHHHHHcCCCEEEecCCCCC-CCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930 20 ASALAAVRGGADRLELCAALSE-GGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG 98 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~-GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG 98 (146)
..+..|.++|.|.+-+...|.. --+.++...++.+......-|..++-| .|+.+.+..+ ++.+.++|+|.
T Consensus 101 ~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp------~~t~e~~~~~---a~~l~~~Gad~ 171 (499)
T PRK12330 101 RFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSP------IHTVEGFVEQ---AKRLLDMGADS 171 (499)
T ss_pred HHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCC------CCCHHHHHHH---HHHHHHcCCCE
Confidence 4688899999999999876643 333334333333333222334445555 3555555544 45567789997
Q ss_pred EEEeeecCCCCcCHHHHHHHHHHhC-----CCCeEEee
Q psy7930 99 FVIGALTGEQEIDIEFIRQLKTIIG-----DRPITFHR 131 (146)
Q Consensus 99 ~VfG~L~~dg~iD~~~~~~Li~~a~-----~~~vtFHR 131 (146)
|-+- +--|.+......+|+++.+ ++++-||-
T Consensus 172 I~Ik--DtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~ 207 (499)
T PRK12330 172 ICIK--DMAALLKPQPAYDIVKGIKEACGEDTRINLHC 207 (499)
T ss_pred EEeC--CCccCCCHHHHHHHHHHHHHhCCCCCeEEEEe
Confidence 7553 6668888888888888764 47777774
No 320
>PLN02801 beta-amylase
Probab=83.12 E-value=4.6 Score=37.44 Aligned_cols=74 Identities=23% Similarity=0.374 Sum_probs=52.9
Q ss_pred hCCCcEEEEEcc---CCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEE----eeecC--CCCcCHHHHHHHHHHhC--CC
Q psy7930 57 LVLVPVFVMIRV---RAGFDFVFSQAEKEIMALDCHQFVESGADGFVI----GALTG--EQEIDIEFIRQLKTIIG--DR 125 (146)
Q Consensus 57 ~~~ipv~vMIRP---~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~Vf----G~L~~--dg~iD~~~~~~Li~~a~--~~ 125 (146)
...+||+||.=- ...+.+ ..-+.+..+++.+|++|+|||.+ |+.-. .++.|...=++|.+.++ |+
T Consensus 13 ~~~vpvyVMlPLd~V~~~~~l----~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GL 88 (517)
T PLN02801 13 ANYVPVYVMLPLGVVTADNVL----EDEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSFGL 88 (517)
T ss_pred CCceeEEEeeecceecCCCcc----CCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHcCC
Confidence 346999999854 012221 23457889999999999999987 66653 67899999999999987 56
Q ss_pred CeEEeeccc
Q psy7930 126 PITFHRAFD 134 (146)
Q Consensus 126 ~vtFHRAFD 134 (146)
++--=+.|-
T Consensus 89 Klq~vmSFH 97 (517)
T PLN02801 89 KIQAIMSFH 97 (517)
T ss_pred eEEEEEEec
Confidence 653333343
No 321
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=83.00 E-value=5 Score=37.67 Aligned_cols=100 Identities=16% Similarity=0.144 Sum_probs=66.9
Q ss_pred HHHHHHHcCCCEEEecCCCC-CCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEE
Q psy7930 21 SALAAVRGGADRLELCAALS-EGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGF 99 (146)
Q Consensus 21 ~a~~A~~~GAdRIELc~~l~-~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~ 99 (146)
-+..|.+.|.|.+=..++|- .--+.++...+++.-..+..-|.-|+- -.||.+.+..+.+. +.++|+|.|
T Consensus 101 ~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~s------p~~t~e~~~~~ak~---l~~~Gad~I 171 (596)
T PRK14042 101 FVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTS------PVHTLDNFLELGKK---LAEMGCDSI 171 (596)
T ss_pred HHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCC------CCCCHHHHHHHHHH---HHHcCCCEE
Confidence 56779999999999998763 334445444443322222222333443 48888888776655 556899966
Q ss_pred EEeeecCCCCcCHHHHHHHHHHhC---CCCeEEee
Q psy7930 100 VIGALTGEQEIDIEFIRQLKTIIG---DRPITFHR 131 (146)
Q Consensus 100 VfG~L~~dg~iD~~~~~~Li~~a~---~~~vtFHR 131 (146)
.+ =+.-|.....+..+|+.+.+ ++++-||-
T Consensus 172 ~I--kDtaG~l~P~~v~~lv~alk~~~~ipi~~H~ 204 (596)
T PRK14042 172 AI--KDMAGLLTPTVTVELYAGLKQATGLPVHLHS 204 (596)
T ss_pred Ee--CCcccCCCHHHHHHHHHHHHhhcCCEEEEEe
Confidence 54 46678888889999988876 57888884
No 322
>PRK07360 FO synthase subunit 2; Reviewed
Probab=82.98 E-value=13 Score=32.34 Aligned_cols=65 Identities=25% Similarity=0.336 Sum_probs=40.4
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCCCHH-------HHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHH--------
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTPTLG-------LYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEI-------- 83 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g-------~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~-------- 83 (146)
+.|..|.+.|+.|+-|. ||..|+.. +++.+++.. ++.++ .+|..|+..
T Consensus 98 ~~a~~a~~~G~~~i~l~-----~G~~p~~~~~e~~~~~i~~ik~~~~~i~i~-----------a~s~~ei~~~~~~~G~~ 161 (371)
T PRK07360 98 EKAAEAVKRGATEVCIQ-----GGLHPAADSLEFYLEILEAIKEEFPDIHLH-----------AFSPMEVYFAAREDGLS 161 (371)
T ss_pred HHHHHHHhCCCCEEEEc-----cCCCCCCCcHHHHHHHHHHHHHhCCCccee-----------eCCHHHHHHHHhhcCCC
Confidence 44567888899999998 46666543 444444422 22222 234545432
Q ss_pred HHHHHHHHHHcCCCEEE
Q psy7930 84 MALDCHQFVESGADGFV 100 (146)
Q Consensus 84 M~~dI~~~~~~GadG~V 100 (146)
.++.++.++++|+|.+-
T Consensus 162 ~~e~l~~LkeAGld~~~ 178 (371)
T PRK07360 162 YEEVLKALKDAGLDSMP 178 (371)
T ss_pred HHHHHHHHHHcCCCcCC
Confidence 23568999999999984
No 323
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=82.90 E-value=3.2 Score=32.88 Aligned_cols=52 Identities=23% Similarity=0.228 Sum_probs=37.3
Q ss_pred ceeEEEecCHHH----HHHHHHcCCCEEEecCCCCCCCCCCC-HHHHHHHHhhCCCcE
Q psy7930 10 TTLEVCVDSVAS----ALAAVRGGADRLELCAALSEGGLTPT-LGLYRVIKRLVLVPV 62 (146)
Q Consensus 10 ~~lEvcv~s~~~----a~~A~~~GAdRIELc~~l~~GGlTPS-~g~i~~~~~~~~ipv 62 (146)
+++|.+-.+.+. ++.|.+.|||-|-...+...+|.||. ...|.++.+ .++||
T Consensus 121 vI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~-~~v~i 177 (203)
T cd00959 121 VILETGLLTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG-GRVGV 177 (203)
T ss_pred EEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC-CCceE
Confidence 478888887544 67788999999999988887887774 355555544 33444
No 324
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=82.80 E-value=6.9 Score=30.69 Aligned_cols=69 Identities=29% Similarity=0.365 Sum_probs=44.0
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCC--CCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc-CC
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLT--PTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES-GA 96 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlT--PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~-Ga 96 (146)
+-+....+.|++-|.+-..-..++.. +....++.+++..++||.+ -|| .. |.+ |+..+.+. |+
T Consensus 142 ~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~-----~Gg-i~-~~~-------d~~~~l~~~ga 207 (231)
T cd02801 142 ELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIA-----NGD-IF-SLE-------DALRCLEQTGV 207 (231)
T ss_pred HHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEE-----eCC-CC-CHH-------HHHHHHHhcCC
Confidence 33456677899999886543222222 4677888888888888765 233 22 333 34444444 89
Q ss_pred CEEEEe
Q psy7930 97 DGFVIG 102 (146)
Q Consensus 97 dG~VfG 102 (146)
|+|.+|
T Consensus 208 d~V~ig 213 (231)
T cd02801 208 DGVMIG 213 (231)
T ss_pred CEEEEc
Confidence 999999
No 325
>PRK13576 3-dehydroquinate dehydratase; Provisional
Probab=82.63 E-value=25 Score=28.76 Aligned_cols=109 Identities=9% Similarity=-0.023 Sum_probs=67.3
Q ss_pred ceeEEEecCHHHHHHHHHc-CCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCC-CCCcccCHHHHHHHHHH
Q psy7930 10 TTLEVCVDSVASALAAVRG-GADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRA-GFDFVFSQAEKEIMALD 87 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~~-GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R-~gdF~Ys~~E~~~M~~d 87 (146)
+..-+...+.+++.+..+. |||=||+--.+-..-. +. ..+ +.+....|+.+=+||+. ||.|..+++|...+...
T Consensus 5 i~vpi~~~~~e~i~~~~~~~~aD~vE~RlD~l~~~~-~~--~~~-~l~~~~~plI~T~R~~~EGG~~~~~~~~r~~ll~~ 80 (216)
T PRK13576 5 IVASLPIKKIEDLKLIGNFLDADLIELRLDYLKDRE-VS--VIE-FLDKYKDKLIVTLRDKAEGGINELDDELKISLLKE 80 (216)
T ss_pred EEEEeCCCCHHHHHHHHhcCCCCEEEEEeccccccc-hh--HHH-HHHhcCCCEEEEeCChHHCCCCcCCHHHHHHHHHH
Confidence 4455666778888888888 9999999876554322 21 233 33445679999999833 56788888877666543
Q ss_pred HHH-----------HHHcCCC--EEEEeeecCCCCcCHHHHHHHHHHh
Q psy7930 88 CHQ-----------FVESGAD--GFVIGALTGEQEIDIEFIRQLKTII 122 (146)
Q Consensus 88 I~~-----------~~~~Gad--G~VfG~L~~dg~iD~~~~~~Li~~a 122 (146)
+.. +.+.+.. .+++-.=+=+++-+.+.+.++++..
T Consensus 81 ~~~~~~~vDiE~~~a~~~~~~~~~vI~S~HdF~~TP~~~eL~~~l~~m 128 (216)
T PRK13576 81 LYDKQFLYDVEASFLQKYNVPYDNKIVSIHYFDYLPTSEEVKEIVSKF 128 (216)
T ss_pred HHHhCCeEEEEcchhhhcCCCCCeEEEEECCCCCCcCHHHHHHHHHHH
Confidence 322 2222222 2444444445666776666666554
No 326
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=82.56 E-value=24 Score=28.55 Aligned_cols=104 Identities=12% Similarity=0.109 Sum_probs=72.7
Q ss_pred ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCC-cEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930 16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLV-PVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES 94 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~i-pv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~ 94 (146)
+-|++++....+.||+|+=|.+.. -.+ .+++++.+..+- .+.+-|=. +.|... ......-..+=++.+.+.
T Consensus 87 ir~~edv~~~l~~Ga~~viigt~~-----~~~-~~~~~~~~~~~~~~iivslD~-~~~~~~-~~~~~~~~~~~~~~~~~~ 158 (233)
T cd04723 87 IRSLENAQEWLKRGASRVIVGTET-----LPS-DDDEDRLAALGEQRLVLSLDF-RGGQLL-KPTDFIGPEELLRRLAKW 158 (233)
T ss_pred cCCHHHHHHHHHcCCCeEEEccee-----ccc-hHHHHHHHhcCCCCeEEEEec-cCCeec-cccCcCCHHHHHHHHHHh
Confidence 568899999999999999876531 124 788888887754 67788877 666332 111111123336677788
Q ss_pred CCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeEE
Q psy7930 95 GADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPITF 129 (146)
Q Consensus 95 GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vtF 129 (146)
++.+++=-++.+|+ .|.+.++++.+.. ++|++.
T Consensus 159 -~~~li~~di~~~G~~~g~~~~~~~~i~~~~-~ipvi~ 194 (233)
T cd04723 159 -PEELIVLDIDRVGSGQGPDLELLERLAARA-DIPVIA 194 (233)
T ss_pred -CCeEEEEEcCccccCCCcCHHHHHHHHHhc-CCCEEE
Confidence 99999999988874 7899998888864 455554
No 327
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=82.48 E-value=2.5 Score=38.58 Aligned_cols=66 Identities=27% Similarity=0.264 Sum_probs=48.4
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD 97 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad 97 (146)
+-+..+++.|||+|=||+ ..|.+||. ..+++.+++..++||.+.--- ..| +.. .-...+.++|||
T Consensus 167 ~~a~~l~~~Gad~I~IkD--taG~l~P~~v~~Lv~alk~~~~~pi~~H~Hn-t~G--------lA~--An~laAieAGad 233 (468)
T PRK12581 167 SLVKELVEMGADSICIKD--MAGILTPKAAKELVSGIKAMTNLPLIVHTHA-TSG--------ISQ--MTYLAAVEAGAD 233 (468)
T ss_pred HHHHHHHHcCCCEEEECC--CCCCcCHHHHHHHHHHHHhccCCeEEEEeCC-CCc--------cHH--HHHHHHHHcCCC
Confidence 447778899999999999 47999994 778999988778898876555 333 111 334455678887
Q ss_pred E
Q psy7930 98 G 98 (146)
Q Consensus 98 G 98 (146)
.
T Consensus 234 ~ 234 (468)
T PRK12581 234 R 234 (468)
T ss_pred E
Confidence 4
No 328
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=82.47 E-value=29 Score=29.39 Aligned_cols=102 Identities=16% Similarity=0.224 Sum_probs=66.3
Q ss_pred cCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhh------CCCcEEEEEccCCC---------CCcccCHHHH
Q psy7930 17 DSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRL------VLVPVFVMIRVRAG---------FDFVFSQAEK 81 (146)
Q Consensus 17 ~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~------~~ipv~vMIRP~R~---------gdF~Ys~~E~ 81 (146)
.+++.+..|.++|.+-|-+=.. ..|....++.+++. .++||-.=+=. =| |..+++.+|.
T Consensus 85 ~~~e~i~~Al~~G~tsVm~d~s-----~~~~~eni~~t~~v~~~a~~~gv~veaE~gh-lG~~d~~~~~~g~s~t~~eea 158 (281)
T PRK06806 85 MTFEKIKEALEIGFTSVMFDGS-----HLPLEENIQKTKEIVELAKQYGATVEAEIGR-VGGSEDGSEDIEMLLTSTTEA 158 (281)
T ss_pred CCHHHHHHHHHcCCCEEEEcCC-----CCCHHHHHHHHHHHHHHHHHcCCeEEEEeee-ECCccCCcccccceeCCHHHH
Confidence 4789999999999999988743 12555666555542 36776543322 22 3334455554
Q ss_pred HHHHHHHHHHHHcCCCEEEE--eeecC----CCCcCHHHHHHHHHHhCCCCeEEee
Q psy7930 82 EIMALDCHQFVESGADGFVI--GALTG----EQEIDIEFIRQLKTIIGDRPITFHR 131 (146)
Q Consensus 82 ~~M~~dI~~~~~~GadG~Vf--G~L~~----dg~iD~~~~~~Li~~a~~~~vtFHR 131 (146)
..-. ++.|+|-+-| |-... .-.+|.+.++++.+.. ++|++.|=
T Consensus 159 ~~f~------~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~-~iPlV~hG 207 (281)
T PRK06806 159 KRFA------EETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVV-HIPLVLHG 207 (281)
T ss_pred HHHH------HhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhc-CCCEEEEC
Confidence 3322 3469996666 55532 2359999999999876 69999995
No 329
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=82.40 E-value=10 Score=33.06 Aligned_cols=73 Identities=19% Similarity=0.187 Sum_probs=52.5
Q ss_pred cCHHHHHHHHHcCCCEEEecCCCCCCCC----------CC--CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHH
Q psy7930 17 DSVASALAAVRGGADRLELCAALSEGGL----------TP--TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIM 84 (146)
Q Consensus 17 ~s~~~a~~A~~~GAdRIELc~~l~~GGl----------TP--S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M 84 (146)
.+.++|..+.+.|||-|-..- ..|+. .| ....+.++++..++||.. .|+..|+
T Consensus 146 ~t~e~a~~l~~aGad~I~V~~--G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~~~pVIa------dGGIr~~------- 210 (321)
T TIGR01306 146 GTPEAVRELENAGADATKVGI--GPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIA------DGGIRTH------- 210 (321)
T ss_pred CCHHHHHHHHHcCcCEEEECC--CCCccccceeeeccCCCchHHHHHHHHHHhcCCeEEE------ECCcCcH-------
Confidence 489999999999999987541 11221 23 445677777777877543 3446666
Q ss_pred HHHHHHHHHcCCCEEEEeeec
Q psy7930 85 ALDCHQFVESGADGFVIGALT 105 (146)
Q Consensus 85 ~~dI~~~~~~GadG~VfG~L~ 105 (146)
.||..+..+|||.+-+|-+=
T Consensus 211 -~Di~KALa~GAd~Vmig~~~ 230 (321)
T TIGR01306 211 -GDIAKSIRFGASMVMIGSLF 230 (321)
T ss_pred -HHHHHHHHcCCCEEeechhh
Confidence 78899999999999999663
No 330
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=82.17 E-value=17 Score=28.17 Aligned_cols=86 Identities=24% Similarity=0.249 Sum_probs=51.2
Q ss_pred HHHHHHHHHcCCCEEEecCCCCCCCCC-CCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930 19 VASALAAVRGGADRLELCAALSEGGLT-PTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD 97 (146)
Q Consensus 19 ~~~a~~A~~~GAdRIELc~~l~~GGlT-PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad 97 (146)
.+.+..+.+.|+|-+-+-......... ++...++++++....+ -|-+ -||- +. +.+..+.+.|++
T Consensus 116 ~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~~---~i~v-~GGI---~~-------~n~~~~~~~Ga~ 181 (206)
T TIGR03128 116 VKRAKELKELGADYIGVHTGLDEQAKGQNPFEDLQTILKLVKEA---RVAV-AGGI---NL-------DTIPDVIKLGPD 181 (206)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCcccCCCCCHHHHHHHHHhcCCC---cEEE-ECCc---CH-------HHHHHHHHcCCC
Confidence 588899999999999664322111111 3566777777766543 2344 4553 32 446678899999
Q ss_pred EEEEe-eecCCCCcCHHHHHHHH
Q psy7930 98 GFVIG-ALTGEQEIDIEFIRQLK 119 (146)
Q Consensus 98 G~VfG-~L~~dg~iD~~~~~~Li 119 (146)
+|++| .|..... =.+.+++|.
T Consensus 182 ~v~vGsai~~~~d-~~~~~~~l~ 203 (206)
T TIGR03128 182 IVIVGGAITKAAD-PAEAARQIR 203 (206)
T ss_pred EEEEeehhcCCCC-HHHHHHHHH
Confidence 99995 4444322 134444443
No 331
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=82.04 E-value=14 Score=30.22 Aligned_cols=41 Identities=12% Similarity=0.213 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCC
Q psy7930 82 EIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGD 124 (146)
Q Consensus 82 ~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~ 124 (146)
+.+++-++.+++.|. -+.|++ ...+..|.+.+.++++.+..
T Consensus 110 ~~~~~~i~~a~~~G~-~v~~~~-~~~~~~~~~~~~~~~~~~~~ 150 (259)
T cd07939 110 DQLRRLVGRAKDRGL-FVSVGA-EDASRADPDFLIEFAEVAQE 150 (259)
T ss_pred HHHHHHHHHHHHCCC-eEEEee-ccCCCCCHHHHHHHHHHHHH
Confidence 455566667777775 356665 33445777777777766543
No 332
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=81.90 E-value=5.8 Score=33.86 Aligned_cols=100 Identities=13% Similarity=0.092 Sum_probs=67.7
Q ss_pred EEecCHHHHHH----HHHcCCCEEEecCC--CCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHH
Q psy7930 14 VCVDSVASALA----AVRGGADRLELCAA--LSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALD 87 (146)
Q Consensus 14 vcv~s~~~a~~----A~~~GAdRIELc~~--l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~d 87 (146)
+-+.|++.+++ |++.++-=|=-.+. +...|+.+-..+++.+.+..++||.+.+=- +.+| +.
T Consensus 23 fN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHLDH--g~~~-----------e~ 89 (284)
T PRK09195 23 FNIHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLDH--HEKF-----------DD 89 (284)
T ss_pred EEeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEECCC--CCCH-----------HH
Confidence 44566666654 55556665544432 233555555666777777789998877755 6655 56
Q ss_pred HHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCC
Q psy7930 88 CHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRP 126 (146)
Q Consensus 88 I~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~ 126 (146)
|..+.++|.+.|-|=.=.-+.+=+...++++++.|+...
T Consensus 90 i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~g 128 (284)
T PRK09195 90 IAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFD 128 (284)
T ss_pred HHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 888889999999886544445567888999999998544
No 333
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=81.84 E-value=9.6 Score=31.71 Aligned_cols=91 Identities=29% Similarity=0.231 Sum_probs=65.2
Q ss_pred EecCHHHHHHHHH-cCCCEEEecCCCCCC--CCCCCHHHHHHHHhhCC--CcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930 15 CVDSVASALAAVR-GGADRLELCAALSEG--GLTPTLGLYRVIKRLVL--VPVFVMIRVRAGFDFVFSQAEKEIMALDCH 89 (146)
Q Consensus 15 cv~s~~~a~~A~~-~GAdRIELc~~l~~G--GlTPS~g~i~~~~~~~~--ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~ 89 (146)
++.++++...=.+ .|.|-+.+=.+...- |.+||.+.+..+++..+ ++|-| -|| - =.+++.
T Consensus 115 ~~~~~~~~~~~l~~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAV-----aGG-I---------~~~~i~ 179 (217)
T COG0269 115 GVWDPEQRAKWLKELGVDQVILHRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAV-----AGG-I---------TPEDIP 179 (217)
T ss_pred cCCCHHHHHHHHHHhCCCEEEEEecccHhhcCCCccHHHHHHHHHhhccCceEEE-----ecC-C---------CHHHHH
Confidence 4566777777666 999999999887666 99999999999988765 34433 233 1 127899
Q ss_pred HHHHcCCCEEEEe-eecCCCCcC-HHHHHHHHHHh
Q psy7930 90 QFVESGADGFVIG-ALTGEQEID-IEFIRQLKTII 122 (146)
Q Consensus 90 ~~~~~GadG~VfG-~L~~dg~iD-~~~~~~Li~~a 122 (146)
.++..|++-||+| ++|. .=| .++.+++.+..
T Consensus 180 ~~~~~~~~ivIvGraIt~--a~dp~~~a~~~~~~i 212 (217)
T COG0269 180 LFKGIGADIVIVGRAITG--AKDPAEAARKFKEEI 212 (217)
T ss_pred HHhcCCCCEEEECchhcC--CCCHHHHHHHHHHHH
Confidence 9999999999998 3443 345 44555555544
No 334
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=81.71 E-value=15 Score=30.31 Aligned_cols=81 Identities=11% Similarity=-0.024 Sum_probs=49.8
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCC--CHHHHHHHHh---hCCCcEE-EEE-ccCCCCCcccCHHH-----HHHHHHH
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTP--TLGLYRVIKR---LVLVPVF-VMI-RVRAGFDFVFSQAE-----KEIMALD 87 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTP--S~g~i~~~~~---~~~ipv~-vMI-RP~R~gdF~Ys~~E-----~~~M~~d 87 (146)
..+..|.+.|++-+||-..=..+-..| +....+..++ ..++.+. +.+ -| -.=+..-.+.+ ++.|++.
T Consensus 15 ~a~~~~~~~G~~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hap-y~iNlas~~~~~r~~sv~~~~~~ 93 (274)
T TIGR00587 15 AAYNRAAEIGATAFMFFLKSPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAP-YLINLASPDEEKEEKSLDVLDEE 93 (274)
T ss_pred HHHHHHHHhCCCEEEEEecCccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCC-eeeecCCCCHHHHHHHHHHHHHH
Confidence 346778999999999987655555555 3444444443 4444421 111 12 00111111333 7889999
Q ss_pred HHHHHHcCCCEEEE
Q psy7930 88 CHQFVESGADGFVI 101 (146)
Q Consensus 88 I~~~~~~GadG~Vf 101 (146)
|+.++++||+.+|+
T Consensus 94 i~~A~~lga~~vv~ 107 (274)
T TIGR00587 94 LKRCELLGIMLYNF 107 (274)
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999999887
No 335
>PRK09389 (R)-citramalate synthase; Provisional
Probab=81.70 E-value=14 Score=33.67 Aligned_cols=64 Identities=28% Similarity=0.421 Sum_probs=43.4
Q ss_pred HHHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930 21 SALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD 97 (146)
Q Consensus 21 ~a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad 97 (146)
-+..+.+.||+||-||+ ..|.+||. ..+++.+++..++|+-+---- +-.+.. .-...+.++||+
T Consensus 148 ~~~~~~~~Ga~~i~l~D--TvG~~~P~~~~~lv~~l~~~~~v~l~~H~HN---------D~GlAv--ANalaAv~aGa~ 213 (488)
T PRK09389 148 LYKAGIEAGADRICFCD--TVGILTPEKTYELFKRLSELVKGPVSIHCHN---------DFGLAV--ANTLAALAAGAD 213 (488)
T ss_pred HHHHHHhCCCCEEEEec--CCCCcCHHHHHHHHHHHHhhcCCeEEEEecC---------CccHHH--HHHHHHHHcCCC
Confidence 34667889999999999 47999995 667888877777666443322 223332 344555678886
No 336
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=81.70 E-value=7.7 Score=34.18 Aligned_cols=71 Identities=17% Similarity=0.179 Sum_probs=47.0
Q ss_pred CHHHHHHHHHcCCCEEEecCCC---CCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930 18 SVASALAAVRGGADRLELCAAL---SEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES 94 (146)
Q Consensus 18 s~~~a~~A~~~GAdRIELc~~l---~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~ 94 (146)
..+-+..+++.|+|-|.+-..- .-++-.+....+.+.++..++||.+ |+ +.|.+ +.+.+.+.
T Consensus 143 ~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIa-------G~-V~t~e-------~A~~l~~a 207 (368)
T PRK08649 143 AQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIV-------GG-CVTYT-------TALHLMRT 207 (368)
T ss_pred HHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEE-------eC-CCCHH-------HHHHHHHc
Confidence 4577888999999999996421 2233333445566666667889843 32 56654 44555568
Q ss_pred CCCEEEEee
Q psy7930 95 GADGFVIGA 103 (146)
Q Consensus 95 GadG~VfG~ 103 (146)
|||+|.+|.
T Consensus 208 GAD~V~VG~ 216 (368)
T PRK08649 208 GAAGVLVGI 216 (368)
T ss_pred CCCEEEECC
Confidence 999999993
No 337
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=81.55 E-value=9.1 Score=33.86 Aligned_cols=68 Identities=22% Similarity=0.209 Sum_probs=44.6
Q ss_pred HHHHHHHHHcCCCEEEecCCC----CCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930 19 VASALAAVRGGADRLELCAAL----SEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES 94 (146)
Q Consensus 19 ~~~a~~A~~~GAdRIELc~~l----~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~ 94 (146)
.+-+..++++|||-|.+-... ...|- .....+.+.++..++||.+ |+ +.|.++ +..+.+.
T Consensus 145 ~e~a~~l~eAGad~I~ihgrt~~q~~~sg~-~~p~~l~~~i~~~~IPVI~-------G~-V~t~e~-------A~~~~~a 208 (369)
T TIGR01304 145 REIAPIVVKAGADLLVIQGTLVSAEHVSTS-GEPLNLKEFIGELDVPVIA-------GG-VNDYTT-------ALHLMRT 208 (369)
T ss_pred HHHHHHHHHCCCCEEEEeccchhhhccCCC-CCHHHHHHHHHHCCCCEEE-------eC-CCCHHH-------HHHHHHc
Confidence 466788999999999986322 22232 2244566667778899853 22 666544 4455568
Q ss_pred CCCEEEEe
Q psy7930 95 GADGFVIG 102 (146)
Q Consensus 95 GadG~VfG 102 (146)
|+|+|++|
T Consensus 209 GaDgV~~G 216 (369)
T TIGR01304 209 GAAGVIVG 216 (369)
T ss_pred CCCEEEEC
Confidence 99999977
No 338
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=81.52 E-value=28 Score=28.52 Aligned_cols=95 Identities=11% Similarity=0.165 Sum_probs=65.4
Q ss_pred cCHHHHHHH-HHcCCCEEEecC-CCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930 17 DSVASALAA-VRGGADRLELCA-ALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES 94 (146)
Q Consensus 17 ~s~~~a~~A-~~~GAdRIELc~-~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~ 94 (146)
.++.+.... .+.||+++-+.+ +-.. |-.|...+++++.+....|+.+ ||+.. | .+|++.+.+.
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a~-~~~~n~~~i~~i~~~~~~~v~v------GGGIr-s-------~e~~~~~l~~ 94 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAAE-GVGNNEMYIKEISKIGFDWIQV------GGGIR-D-------IEKAKRLLSL 94 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcC-CCcchHHHHHHHHhhCCCCEEE------eCCcC-C-------HHHHHHHHHC
Confidence 466555444 457999999886 2123 6778889999998844347654 33322 1 1678888899
Q ss_pred CCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEE
Q psy7930 95 GADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITF 129 (146)
Q Consensus 95 GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtF 129 (146)
|++-+|+|-.+- -|.+.++++.+.-++-.+++
T Consensus 95 Ga~kvvigt~a~---~~p~~~~~~~~~~g~~~ivv 126 (232)
T PRK13586 95 DVNALVFSTIVF---TNFNLFHDIVREIGSNRVLV 126 (232)
T ss_pred CCCEEEECchhh---CCHHHHHHHHHHhCCCCEEE
Confidence 999999986553 36788888888876555554
No 339
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=81.50 E-value=5.6 Score=36.35 Aligned_cols=97 Identities=18% Similarity=0.192 Sum_probs=60.5
Q ss_pred HHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHh---hCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930 22 ALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKR---LVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG 98 (146)
Q Consensus 22 a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~---~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG 98 (146)
+..|.+.|.|.+=..+.|-. .--....++.+++ .+..-+..++-| .|+ ++-..+-++.+.++|+|.
T Consensus 111 v~~a~~~Gidi~Rifd~lnd--~~n~~~ai~~ak~~G~~~~~~i~yt~sp------~~t---~~y~~~~a~~l~~~Gad~ 179 (468)
T PRK12581 111 ISLSAQNGIDVFRIFDALND--PRNIQQALRAVKKTGKEAQLCIAYTTSP------VHT---LNYYLSLVKELVEMGADS 179 (468)
T ss_pred HHHHHHCCCCEEEEcccCCC--HHHHHHHHHHHHHcCCEEEEEEEEEeCC------cCc---HHHHHHHHHHHHHcCCCE
Confidence 77789999999999886541 1111223333333 122334444445 233 333444556667899997
Q ss_pred EEEeeecCCCCcCHHHHHHHHHHhC---CCCeEEee
Q psy7930 99 FVIGALTGEQEIDIEFIRQLKTIIG---DRPITFHR 131 (146)
Q Consensus 99 ~VfG~L~~dg~iD~~~~~~Li~~a~---~~~vtFHR 131 (146)
|.+- +.-|.+....+.+|+++.+ ++++-||-
T Consensus 180 I~Ik--DtaG~l~P~~v~~Lv~alk~~~~~pi~~H~ 213 (468)
T PRK12581 180 ICIK--DMAGILTPKAAKELVSGIKAMTNLPLIVHT 213 (468)
T ss_pred EEEC--CCCCCcCHHHHHHHHHHHHhccCCeEEEEe
Confidence 6653 6678888889999988876 47788883
No 340
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=81.44 E-value=24 Score=33.01 Aligned_cols=96 Identities=21% Similarity=0.147 Sum_probs=65.5
Q ss_pred HHHHHHcCCCEEEecCCCCCCCCCCC----------HHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHH
Q psy7930 22 ALAAVRGGADRLELCAALSEGGLTPT----------LGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQ 90 (146)
Q Consensus 22 a~~A~~~GAdRIELc~~l~~GGlTPS----------~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~ 90 (146)
+....+.|.+.||.- ||.|-. ...++.+++.. ++++..+.|. ..-.-|....-++++.+++.
T Consensus 27 a~~L~~~Gv~~IE~~-----GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg--~N~~G~~~ypddvv~~~v~~ 99 (582)
T TIGR01108 27 AEKLDDVGYWSLEVW-----GGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRG--QNLLGYRHYADDVVERFVKK 99 (582)
T ss_pred HHHHHHcCCCEEEec-----CCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEcc--ccccccccCchhhHHHHHHH
Confidence 344566799999995 343321 44677777644 6899999985 22234666677788899999
Q ss_pred HHHcCCCEEEEe-eecCCCCcCHHHHHHHHHHhC--CCCeEE
Q psy7930 91 FVESGADGFVIG-ALTGEQEIDIEFIRQLKTIIG--DRPITF 129 (146)
Q Consensus 91 ~~~~GadG~VfG-~L~~dg~iD~~~~~~Li~~a~--~~~vtF 129 (146)
+.+.|+|-|-+- .++ |...++..++.|+ |+.+.+
T Consensus 100 a~~~Gvd~irif~~ln-----d~~n~~~~i~~ak~~G~~v~~ 136 (582)
T TIGR01108 100 AVENGMDVFRIFDALN-----DPRNLQAAIQAAKKHGAHAQG 136 (582)
T ss_pred HHHCCCCEEEEEEecC-----cHHHHHHHHHHHHHcCCEEEE
Confidence 999999976554 333 2467888888887 554443
No 341
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=81.44 E-value=12 Score=31.81 Aligned_cols=77 Identities=19% Similarity=0.303 Sum_probs=53.5
Q ss_pred eEEEecCHHHHHHHHH-cCCCEEEecCCCCCCCCC---C--CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHH
Q psy7930 12 LEVCVDSVASALAAVR-GGADRLELCAALSEGGLT---P--TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMA 85 (146)
Q Consensus 12 lEvcv~s~~~a~~A~~-~GAdRIELc~~l~~GGlT---P--S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~ 85 (146)
+..-+.|++++..+.+ .|+|-+-+--.-..| +. | .+..++++++.+++|+ |+| ||+= -+ .
T Consensus 148 ~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg-~~~~~~~l~~~~L~~i~~~~~iPl-V~h----G~SG-I~-------~ 213 (281)
T PRK06806 148 IEMLLTSTTEAKRFAEETDVDALAVAIGNAHG-MYNGDPNLRFDRLQEINDVVHIPL-VLH----GGSG-IS-------P 213 (281)
T ss_pred ccceeCCHHHHHHHHHhhCCCEEEEccCCCCC-CCCCCCccCHHHHHHHHHhcCCCE-EEE----CCCC-CC-------H
Confidence 3556789999999875 599999883221122 22 2 5778999999999997 444 4220 11 2
Q ss_pred HHHHHHHHcCCCEEEEe
Q psy7930 86 LDCHQFVESGADGFVIG 102 (146)
Q Consensus 86 ~dI~~~~~~GadG~VfG 102 (146)
+++..+.+.|+++|-++
T Consensus 214 e~~~~~i~~G~~kinv~ 230 (281)
T PRK06806 214 EDFKKCIQHGIRKINVA 230 (281)
T ss_pred HHHHHHHHcCCcEEEEh
Confidence 66788899999999765
No 342
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=81.41 E-value=1.2 Score=38.33 Aligned_cols=55 Identities=20% Similarity=0.337 Sum_probs=37.2
Q ss_pred ccCHHHHHHHHHHHHHHHHcCCCEEEEee--ecCCCCcCHHHHHHHHHHhC-CCCeEEe
Q psy7930 75 VFSQAEKEIMALDCHQFVESGADGFVIGA--LTGEQEIDIEFIRQLKTIIG-DRPITFH 130 (146)
Q Consensus 75 ~Ys~~E~~~M~~dI~~~~~~GadG~VfG~--L~~dg~iD~~~~~~Li~~a~-~~~vtFH 130 (146)
.|+..+-++|+..+++++++|++||+|=- -+...-++.. ++.+++.-+ +++..|-
T Consensus 51 yYdl~~p~v~~~Q~~lA~~~GI~gF~~~~Ywf~gk~lLe~p-~~~~l~~~~~d~pFcl~ 108 (345)
T PF14307_consen 51 YYDLRDPEVMEKQAELAKEYGIDGFCFYHYWFNGKRLLEKP-LENLLASKEPDFPFCLC 108 (345)
T ss_pred cccCCCHHHHHHHHHHHHHhCCCEEEEEeeecCCchHHHHH-HHHHHhcCCCCCcEEEE
Confidence 46778999999999999999999999962 2222234433 355663222 5666663
No 343
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=81.32 E-value=33 Score=29.39 Aligned_cols=98 Identities=19% Similarity=0.310 Sum_probs=62.5
Q ss_pred HHHHHHcCCCEEEe--------cCCCCCCCCCCCHHHHHHHHhhC----CCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930 22 ALAAVRGGADRLEL--------CAALSEGGLTPTLGLYRVIKRLV----LVPVFVMIRVRAGFDFVFSQAEKEIMALDCH 89 (146)
Q Consensus 22 a~~A~~~GAdRIEL--------c~~l~~GGlTPS~g~i~~~~~~~----~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~ 89 (146)
+...++.||-=|-+ |..+.-..+-|.-..+++++... +.+..++-|- -. |. ...++.-.+=.+
T Consensus 99 V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART-Da--~~--~~g~deAI~Ra~ 173 (292)
T PRK11320 99 VKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMART-DA--LA--VEGLDAAIERAQ 173 (292)
T ss_pred HHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEec-Cc--cc--ccCHHHHHHHHH
Confidence 56678889977766 44444334566666666655432 5677777775 11 21 122444445588
Q ss_pred HHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEEe
Q psy7930 90 QFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFH 130 (146)
Q Consensus 90 ~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtFH 130 (146)
.++++|||++-+-.++ +.+.++++.+..+ .|+.+.
T Consensus 174 aY~eAGAD~ifi~~~~-----~~~~i~~~~~~~~-~Pl~~n 208 (292)
T PRK11320 174 AYVEAGADMIFPEAMT-----ELEMYRRFADAVK-VPILAN 208 (292)
T ss_pred HHHHcCCCEEEecCCC-----CHHHHHHHHHhcC-CCEEEE
Confidence 8999999999886554 6888888888663 565443
No 344
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=81.08 E-value=27 Score=28.09 Aligned_cols=117 Identities=21% Similarity=0.191 Sum_probs=67.5
Q ss_pred EEecCHHHHHHHH---HcCCCEEEecCCCCCCCCCCC--HHHHHHHHhh-CCCcEEEEEccC-CCCCcccCHHHHHHHHH
Q psy7930 14 VCVDSVASALAAV---RGGADRLELCAALSEGGLTPT--LGLYRVIKRL-VLVPVFVMIRVR-AGFDFVFSQAEKEIMAL 86 (146)
Q Consensus 14 vcv~s~~~a~~A~---~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~-~~ipv~vMIRP~-R~gdF~Ys~~E~~~M~~ 86 (146)
+.-.+.+++.... ..|||=|||.-.+-..-..+. ..+.+++... .++|+.+-+|++ .||.|..++++.-.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~~~~~~~~~piI~T~R~~~eGG~~~~~~~~~~~ll- 84 (228)
T TIGR01093 6 LTAPDLEEALATAEKICKGADIVELRVDLLKDPSSNNDVDALIEQLSQLRPDKPLIFTIRTISEGGKFPGNEEEYLEEL- 84 (228)
T ss_pred ccCCCHHHHHHHHHHhccCCCEEEEEechhcccCcHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHHHHHHH-
Confidence 3345555544333 479999999976632211111 1233333321 378999999972 4678888877654443
Q ss_pred HHHHH-HHcCCCEEEEeeecCCCCcCHHHHHHHHHHh--CCCCeEEee-cccCCCC
Q psy7930 87 DCHQF-VESGADGFVIGALTGEQEIDIEFIRQLKTII--GDRPITFHR-AFDVVRE 138 (146)
Q Consensus 87 dI~~~-~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a--~~~~vtFHR-AFD~~~d 138 (146)
..+ ...|+|-+-+=. ..+.+.+++|++.+ ++..+..+. =|+.+++
T Consensus 85 --~~~~~~~~~d~vDiEl-----~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tp~ 133 (228)
T TIGR01093 85 --KRAADSPGPDFVDIEL-----FLPDDAVKELINIAKKGGTKIIMSYHDFQKTPS 133 (228)
T ss_pred --HHHHHhCCCCEEEEEc-----cCCHHHHHHHHHHHHHCCCEEEEeccCCCCCCC
Confidence 333 556777776653 34566788888844 355544333 4555543
No 345
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=81.03 E-value=18 Score=32.74 Aligned_cols=90 Identities=16% Similarity=0.148 Sum_probs=58.8
Q ss_pred HHHHHcCCCEEEecCCCCCCCC---------CC-CHHHHHHHHhh-CCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHH
Q psy7930 23 LAAVRGGADRLELCAALSEGGL---------TP-TLGLYRVIKRL-VLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQF 91 (146)
Q Consensus 23 ~~A~~~GAdRIELc~~l~~GGl---------TP-S~g~i~~~~~~-~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~ 91 (146)
..-.+.|.++||.- ||. .| ....++.+++. .++++..+.|. . .-.-|+..-=+.++.||+.+
T Consensus 33 ~~Ld~~Gv~~IE~~-----ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~-~-N~~G~~~~pddvv~~~v~~A 105 (448)
T PRK12331 33 EKLDNAGYHSLEMW-----GGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRG-Q-NLLGYRNYADDVVESFVQKS 105 (448)
T ss_pred HHHHHcCCCEEEec-----CCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEecc-c-cccccccCchhhHHHHHHHH
Confidence 34566799999994 443 22 24567777766 36888888986 2 22334444445677899999
Q ss_pred HHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930 92 VESGADGFVIGALTGEQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 92 ~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~ 123 (146)
.+.|+|-|-+-. +=+ |...+++.++.|+
T Consensus 106 ~~~Gvd~irif~--~ln--d~~n~~~~v~~ak 133 (448)
T PRK12331 106 VENGIDIIRIFD--ALN--DVRNLETAVKATK 133 (448)
T ss_pred HHCCCCEEEEEE--ecC--cHHHHHHHHHHHH
Confidence 999999654443 222 2236888888887
No 346
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=81.02 E-value=16 Score=31.75 Aligned_cols=45 Identities=31% Similarity=0.387 Sum_probs=34.2
Q ss_pred HHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhCCCcEEEEEcc
Q psy7930 22 ALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLVLVPVFVMIRV 68 (146)
Q Consensus 22 a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~~ipv~vMIRP 68 (146)
+..+.+.|++||-||+. .|.+||. ..+++.+++..++|+.+----
T Consensus 147 ~~~~~~~g~~~i~l~DT--~G~~~P~~v~~li~~l~~~~~~~l~~H~Hn 193 (363)
T TIGR02090 147 FKRAEEAGADRINIADT--VGVLTPQKMEELIKKLKENVKLPISVHCHN 193 (363)
T ss_pred HHHHHhCCCCEEEEeCC--CCccCHHHHHHHHHHHhcccCceEEEEecC
Confidence 45678899999999995 6999995 677888887776666554433
No 347
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=81.02 E-value=11 Score=30.76 Aligned_cols=69 Identities=20% Similarity=0.187 Sum_probs=44.1
Q ss_pred cCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCC
Q psy7930 17 DSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGA 96 (146)
Q Consensus 17 ~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Ga 96 (146)
++.+=+..+++.|+|-|-.- +...| ....+..+++++ .++||.. -|| +.|.+ |+..+.+.|+
T Consensus 153 ~~~~la~~l~~aG~d~ihv~-~~~~g-~~ad~~~I~~i~--~~ipVIg-----nGg--I~s~e-------da~~~l~~Ga 214 (233)
T cd02911 153 DDEELARLIEKAGADIIHVD-AMDPG-NHADLKKIRDIS--TELFIIG-----NNS--VTTIE-------SAKEMFSYGA 214 (233)
T ss_pred CHHHHHHHHHHhCCCEEEEC-cCCCC-CCCcHHHHHHhc--CCCEEEE-----ECC--cCCHH-------HHHHHHHcCC
Confidence 45666788899999987663 32333 345677777765 5677632 255 33443 4444445699
Q ss_pred CEEEEee
Q psy7930 97 DGFVIGA 103 (146)
Q Consensus 97 dG~VfG~ 103 (146)
|||-+|=
T Consensus 215 D~VmiGR 221 (233)
T cd02911 215 DMVSVAR 221 (233)
T ss_pred CEEEEcC
Confidence 9999993
No 348
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=81.01 E-value=17 Score=33.20 Aligned_cols=118 Identities=14% Similarity=0.099 Sum_probs=70.5
Q ss_pred cceeEEEecCHHH----HHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCC-CCCcccCHHHHHH
Q psy7930 9 KTTLEVCVDSVAS----ALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRA-GFDFVFSQAEKEI 83 (146)
Q Consensus 9 ~~~lEvcv~s~~~----a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R-~gdF~Ys~~E~~~ 83 (146)
++.+.+.-.+.++ +..+...|+|=|||.-.+-..- . ....+..+.+..++|+.+=+|+++ ||.|..++++...
T Consensus 24 ~icv~i~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~-~-~~~~~~~~~~~~~~plI~T~R~~~eGG~~~~~~~~~~~ 101 (529)
T PLN02520 24 LICVPIMADSVDKMLIEMAKAKELGADLVEIRLDFLKNF-N-PREDLKTLIKQSPLPTLVTYRPKWEGGQYEGDENKRQD 101 (529)
T ss_pred EEEEEeCCCCHHHHHHHHHHhhhcCCCEEEEEecccccc-C-CHHHHHHHHhcCCCcEEEEeccHHHCCCCCCCHHHHHH
Confidence 3444555455555 4455567999999998765432 2 234455556667899999999833 6778888877554
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC--CCC--eEEeecccCCCC
Q psy7930 84 MALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG--DRP--ITFHRAFDVVRE 138 (146)
Q Consensus 84 M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~--vtFHRAFD~~~d 138 (146)
+ ++.+.+.|+|-+=+= -..+. .+.+++..++ +.+ +.+|- |+.+++
T Consensus 102 l---l~~~~~~~~d~iDiE-----l~~~~-~~~~~~~~~~~~~~~vI~S~H~-f~~tP~ 150 (529)
T PLN02520 102 A---LRLAMELGADYVDVE-----LKVAH-EFINSISGKKPEKCKVIVSSHN-YENTPS 150 (529)
T ss_pred H---HHHHHHhCCCEEEEE-----cCCch-hHHHHHHhhhhcCCEEEEEecC-CCCCCC
Confidence 4 344556676654442 11222 4456666665 333 45664 666654
No 349
>PLN02161 beta-amylase
Probab=80.85 E-value=6.7 Score=36.51 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=53.2
Q ss_pred CCcEEEEEccC---CCCCcccCHHHHHHHHHHHHHHHHcCCCEEEE----eeecC--CCCcCHHHHHHHHHHhC--CCCe
Q psy7930 59 LVPVFVMIRVR---AGFDFVFSQAEKEIMALDCHQFVESGADGFVI----GALTG--EQEIDIEFIRQLKTIIG--DRPI 127 (146)
Q Consensus 59 ~ipv~vMIRP~---R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~Vf----G~L~~--dg~iD~~~~~~Li~~a~--~~~v 127 (146)
.+||+||.=-- .+++=+=.=...+.|..+++.+|++|+|||.+ |+.-. .++.|...=++|.+.++ ++++
T Consensus 91 ~vpvyVMlPLD~V~~~~~~~~~v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKl 170 (531)
T PLN02161 91 RVPVFVMMPVDTFGIDASGCPKIKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRLISEAGLKL 170 (531)
T ss_pred CeeEEEEeecceeccCcccccccCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeE
Confidence 69999998540 11100001145678999999999999999987 66653 57899999999999997 5554
Q ss_pred EEeecccC
Q psy7930 128 TFHRAFDV 135 (146)
Q Consensus 128 tFHRAFD~ 135 (146)
.-=+.|-+
T Consensus 171 q~vmSFHq 178 (531)
T PLN02161 171 HVALCFHS 178 (531)
T ss_pred EEEEEecc
Confidence 43334433
No 350
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=80.82 E-value=31 Score=28.60 Aligned_cols=95 Identities=19% Similarity=0.245 Sum_probs=59.2
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCC-------CCC--cccCHHHHHHHHHHHHH
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRA-------GFD--FVFSQAEKEIMALDCHQ 90 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R-------~gd--F~Ys~~E~~~M~~dI~~ 90 (146)
..+...++.||+=|-|=+. .. -...++.+++. .+||..-+-- . +|+ |-=+..+++.+.++.+.
T Consensus 93 ~~~~~l~~aGa~gv~iED~-----~~-~~~~i~ai~~a-~i~ViaRtd~-~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~a 164 (240)
T cd06556 93 ELAKTFMRAGAAGVKIEGG-----EW-HIETLQMLTAA-AVPVIAHTGL-TPQSVNTSGGDEGQYRGDEAGEQLIADALA 164 (240)
T ss_pred HHHHHHHHcCCcEEEEcCc-----HH-HHHHHHHHHHc-CCeEEEEeCC-chhhhhccCCceeeccCHHHHHHHHHHHHH
Confidence 3466677889988877542 10 12234444433 4554433221 1 111 22246789999999999
Q ss_pred HHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEE
Q psy7930 91 FVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITF 129 (146)
Q Consensus 91 ~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtF 129 (146)
+.++|||++++= +. |.+..+++.+.. +.|+.+
T Consensus 165 y~~AGAd~i~~e-----~~-~~e~~~~i~~~~-~~P~~~ 196 (240)
T cd06556 165 YAPAGADLIVME-----CV-PVELAKQITEAL-AIPLAG 196 (240)
T ss_pred HHHcCCCEEEEc-----CC-CHHHHHHHHHhC-CCCEEE
Confidence 999999999983 33 888888888864 355544
No 351
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=80.65 E-value=33 Score=28.88 Aligned_cols=107 Identities=20% Similarity=0.239 Sum_probs=71.3
Q ss_pred cCHHHHHHHHHcCCCEEEecC---C-C-CCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930 17 DSVASALAAVRGGADRLELCA---A-L-SEGGLTPTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMALDCH 89 (146)
Q Consensus 17 ~s~~~a~~A~~~GAdRIELc~---~-l-~~GGlTPS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~ 89 (146)
++.++.-.|...||+.|-.+. . + .+|=++|..+-+-..|+.+ ++.|..=|++ ..+... .+..++...+|
T Consensus 91 d~~aalaiA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ilaDV~~-kh~~~l-~~~~~~~~~~~-- 166 (254)
T PF03437_consen 91 DPKAALAIAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGADVKILADVHV-KHSSPL-ATRDLEEAAKD-- 166 (254)
T ss_pred CCHHHHHHHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCCCeEEEeeech-hhcccC-CCCCHHHHHHH--
Confidence 556778889999999988553 2 2 2344566666666666655 4677777889 444333 33345543333
Q ss_pred HHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeE
Q psy7930 90 QFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPIT 128 (146)
Q Consensus 90 ~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vt 128 (146)
.+...++||+++.=-.-....|.+.+++..+.+. +|+-
T Consensus 167 a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~-~PVl 204 (254)
T PF03437_consen 167 AVERGGADAVIVTGKATGEPPDPEKLKRVREAVP-VPVL 204 (254)
T ss_pred HHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCC-CCEE
Confidence 2255799999886655566789999999888887 6654
No 352
>PRK05985 cytosine deaminase; Provisional
Probab=80.63 E-value=9.8 Score=32.54 Aligned_cols=103 Identities=17% Similarity=0.111 Sum_probs=57.8
Q ss_pred HHHHHHHHcCCCEE-EecCCCCCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCC
Q psy7930 20 ASALAAVRGGADRL-ELCAALSEGGLTPTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGA 96 (146)
Q Consensus 20 ~~a~~A~~~GAdRI-ELc~~l~~GGlTPS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Ga 96 (146)
..+..+.++|..-+ +-+.-...-|++- .+-+.++++.. .+.+.++-.| ..|-|.+...+ +.++...+.|+
T Consensus 102 ~~~~~~l~~G~t~vr~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~-~~g~~~~~~~~-----~ll~~~l~~g~ 174 (391)
T PRK05985 102 ALARAAAAAGTTAMRSHVDVDPDAGLRH-LEAVLAARETLRGLIDIQIVAFP-QSGVLSRPGTA-----ELLDAALRAGA 174 (391)
T ss_pred HHHHHHHhcCcceEEeeEccCCCcccch-HHHHHHHHHHhhCcccEEEEecc-CccccCCcCHH-----HHHHHHHHcCC
Confidence 33555666676553 1111111112222 33344445444 5778888788 66666554433 44667777888
Q ss_pred CEEEEeeecCCC--CcCHHHHHHHHHHhC--CCCeEEee
Q psy7930 97 DGFVIGALTGEQ--EIDIEFIRQLKTIIG--DRPITFHR 131 (146)
Q Consensus 97 dG~VfG~L~~dg--~iD~~~~~~Li~~a~--~~~vtFHR 131 (146)
+ ++|.+.+.. ....+.++++++.|+ ++++.+|-
T Consensus 175 ~--~~gg~~p~~~~~~~~~~l~~~~~~A~~~g~~i~~Hv 211 (391)
T PRK05985 175 D--VVGGLDPAGIDGDPEGQLDIVFGLAERHGVGIDIHL 211 (391)
T ss_pred C--EEeCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEee
Confidence 5 445564422 233477888888876 78899994
No 353
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=80.60 E-value=4.3 Score=36.88 Aligned_cols=104 Identities=23% Similarity=0.205 Sum_probs=66.9
Q ss_pred CHHHHHHHHHcC-CCEEEecCCCCCCCCCC---CHHHHHHHH---hhC------CCcEEEEEccCCCCCcccCHHHHHHH
Q psy7930 18 SVASALAAVRGG-ADRLELCAALSEGGLTP---TLGLYRVIK---RLV------LVPVFVMIRVRAGFDFVFSQAEKEIM 84 (146)
Q Consensus 18 s~~~a~~A~~~G-AdRIELc~~l~~GGlTP---S~g~i~~~~---~~~------~ipv~vMIRP~R~gdF~Ys~~E~~~M 84 (146)
|.++|..|++.| ||=| |...+.||-|. ...++..+. +.+ ..||.|.. -|| ..|.
T Consensus 170 t~eEA~~a~~~g~aD~I--vve~EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViA---AGG--I~t~------ 236 (444)
T TIGR02814 170 TREEAELARRVPVADDI--CVEADSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGA---AGG--IGTP------ 236 (444)
T ss_pred CHHHHHHHHhCCCCcEE--EEeccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEE---eCC--CCCH------
Confidence 778888899999 6888 54578888876 455565554 222 23544332 244 3333
Q ss_pred HHHHHHHHHcCCCEEEEeeec---CCCCcCHHHHHHHHHHhCCCCeEEeecccCC
Q psy7930 85 ALDCHQFVESGADGFVIGALT---GEQEIDIEFIRQLKTIIGDRPITFHRAFDVV 136 (146)
Q Consensus 85 ~~dI~~~~~~GadG~VfG~L~---~dg~iD~~~~~~Li~~a~~~~vtFHRAFD~~ 136 (146)
+++..+..+|||||+.|=.. .+-... +..++++..+..-+.++--|-|+.
T Consensus 237 -~~vaAAlaLGAdgV~~GT~flat~Esgas-~~~K~~L~~a~~~DT~~ap~~dmf 289 (444)
T TIGR02814 237 -EAAAAAFMLGADFIVTGSVNQCTVEAGTS-DNVKKLLAKADVQDTAYAPAGDMF 289 (444)
T ss_pred -HHHHHHHHcCCcEEEeccHHHhCccccCC-HHHHHHHHhCCCcCeEEecCcccc
Confidence 56777889999999999542 222222 345677767777777777776664
No 354
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=80.37 E-value=8.4 Score=33.70 Aligned_cols=83 Identities=24% Similarity=0.211 Sum_probs=50.7
Q ss_pred HHHHHHHHHcCCCEEEecC-C---C--------------CCCCC-----CCCHHHHHHHHhhC--CCcEEEEEccCCC--
Q psy7930 19 VASALAAVRGGADRLELCA-A---L--------------SEGGL-----TPTLGLYRVIKRLV--LVPVFVMIRVRAG-- 71 (146)
Q Consensus 19 ~~~a~~A~~~GAdRIELc~-~---l--------------~~GGl-----TPS~g~i~~~~~~~--~ipv~vMIRP~R~-- 71 (146)
.+.|..|+++|.|-|||-. + | .-||. --...+++.+++.+ +.||-+=|+| ..
T Consensus 153 ~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~-~~~~ 231 (382)
T cd02931 153 GESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSV-KSYI 231 (382)
T ss_pred HHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEec-hhhc
Confidence 3678889999999999975 2 2 11441 11245788888877 4567666665 21
Q ss_pred ----------CCcccCHHHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930 72 ----------FDFVFSQAEKEIMALDCHQFVESGADGFVIG 102 (146)
Q Consensus 72 ----------gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG 102 (146)
.+|......++.+.+=++.+.+.|+|-+-+-
T Consensus 232 ~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs 272 (382)
T cd02931 232 KDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVD 272 (382)
T ss_pred cccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 0122222234445555677778899988663
No 355
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=80.36 E-value=23 Score=29.40 Aligned_cols=106 Identities=17% Similarity=0.072 Sum_probs=62.2
Q ss_pred CHHHHHHHHHcCCCEEEecCCCC------CCCCCCC--HHHHHHHHhh---CCCcEEEEEccCCCCCc-ccCHHHHHHHH
Q psy7930 18 SVASALAAVRGGADRLELCAALS------EGGLTPT--LGLYRVIKRL---VLVPVFVMIRVRAGFDF-VFSQAEKEIMA 85 (146)
Q Consensus 18 s~~~a~~A~~~GAdRIELc~~l~------~GGlTPS--~g~i~~~~~~---~~ipv~vMIRP~R~gdF-~Ys~~E~~~M~ 85 (146)
+...+..|.+.|.+.|.++..-+ .=|.|+. ...++.+.+. .+..|.+- + - +| ..+..+.+...
T Consensus 80 ~~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~--~-~--~~~d~~~~~~~~~~ 154 (273)
T cd07941 80 EDPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFD--A-E--HFFDGYKANPEYAL 154 (273)
T ss_pred chHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEe--E-E--eccccCCCCHHHHH
Confidence 34567778999999998874321 1233331 2222222222 25555442 3 1 12 11223455556
Q ss_pred HHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC---C-CCeEEe
Q psy7930 86 LDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG---D-RPITFH 130 (146)
Q Consensus 86 ~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~---~-~~vtFH 130 (146)
+=++.+.++|++.|. +-+.-|....+.+.+|++..+ + .++-||
T Consensus 155 ~~~~~~~~~g~~~i~--l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H 201 (273)
T cd07941 155 ATLKAAAEAGADWLV--LCDTNGGTLPHEIAEIVKEVRERLPGVPLGIH 201 (273)
T ss_pred HHHHHHHhCCCCEEE--EecCCCCCCHHHHHHHHHHHHHhCCCCeeEEE
Confidence 666777889999765 457788888888888887764 3 667776
No 356
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=80.18 E-value=20 Score=30.52 Aligned_cols=76 Identities=21% Similarity=0.273 Sum_probs=50.8
Q ss_pred HHHH-cCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEE--ccCC---CCCcc---cCHHHHHHHHHHHHHHHHc
Q psy7930 24 AAVR-GGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMI--RVRA---GFDFV---FSQAEKEIMALDCHQFVES 94 (146)
Q Consensus 24 ~A~~-~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMI--RP~R---~gdF~---Ys~~E~~~M~~dI~~~~~~ 94 (146)
...+ +|||-+-|= ||. -...+++.+.+ .+|||.--| .|.+ -|+|. =+.++-+.+.+|.+.+.++
T Consensus 102 rl~ke~GadaVKlE-----Gg~-~~~~~i~~l~~-~GIPV~gHiGLtPQ~~~~~GGyr~qGk~~~~a~~l~~~A~ale~A 174 (261)
T PF02548_consen 102 RLMKEAGADAVKLE-----GGA-EIAETIKALVD-AGIPVMGHIGLTPQSVHQLGGYRVQGKTAEEAEKLLEDAKALEEA 174 (261)
T ss_dssp HHHHTTT-SEEEEE-----BSG-GGHHHHHHHHH-TT--EEEEEES-GGGHHHHTSS--CSTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEec-----cch-hHHHHHHHHHH-CCCcEEEEecCchhheeccCCceEEecCHHHHHHHHHHHHHHHHc
Confidence 3444 899998874 554 45666666544 589998888 3411 13444 3689999999999999999
Q ss_pred CCCEEEEeeecC
Q psy7930 95 GADGFVIGALTG 106 (146)
Q Consensus 95 GadG~VfG~L~~ 106 (146)
|+-++|+=+..+
T Consensus 175 Gaf~ivlE~vp~ 186 (261)
T PF02548_consen 175 GAFAIVLECVPA 186 (261)
T ss_dssp T-SEEEEESBBH
T ss_pred CccEEeeecCHH
Confidence 999999987553
No 357
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=80.14 E-value=2.4 Score=36.38 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEeeec------CCCCcCHHHHHHHHHHhC--CCCeEE
Q psy7930 82 EIMALDCHQFVESGADGFVIGALT------GEQEIDIEFIRQLKTIIG--DRPITF 129 (146)
Q Consensus 82 ~~M~~dI~~~~~~GadG~VfG~L~------~dg~iD~~~~~~Li~~a~--~~~vtF 129 (146)
+.+++|++.++++|++-|-+|.+. +.|..|.+.+.++++.++ |+.|.+
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL 65 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVIL 65 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEE
Confidence 678999999999999999998763 469999999999999997 666665
No 358
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=80.13 E-value=9.3 Score=32.22 Aligned_cols=89 Identities=17% Similarity=0.078 Sum_probs=63.1
Q ss_pred EEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHH-HHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHH
Q psy7930 14 VCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYR-VIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFV 92 (146)
Q Consensus 14 vcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~-~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~ 92 (146)
+...|+.-+..+...|-|-+-+-. +.|-+ +...+. .++......+-+|+|+ ..+++ ..|+.+.
T Consensus 24 ~~~~sp~~~E~~a~~GfD~v~iD~--EHg~~--~~~~l~~~i~a~~~~g~~~lVRv-p~~~~-----------~~i~r~L 87 (267)
T PRK10128 24 LSSTTSYMAEIAATSGYDWLLIDG--EHAPN--TIQDLYHQLQAIAPYASQPVIRP-VEGSK-----------PLIKQVL 87 (267)
T ss_pred ecCCCcHHHHHHHHcCCCEEEEcc--ccCCC--CHHHHHHHHHHHHhcCCCeEEEC-CCCCH-----------HHHHHHh
Confidence 345677888888899999998864 34433 333333 2322223456679998 77763 5678899
Q ss_pred HcCCCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930 93 ESGADGFVIGALTGEQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 93 ~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~ 123 (146)
++||+||++=-.+ ..+..++++++++
T Consensus 88 D~GA~GIivP~V~-----saeeA~~~V~a~r 113 (267)
T PRK10128 88 DIGAQTLLIPMVD-----TAEQARQVVSATR 113 (267)
T ss_pred CCCCCeeEecCcC-----CHHHHHHHHHhcC
Confidence 9999999997655 3678899999997
No 359
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=80.09 E-value=19 Score=34.38 Aligned_cols=95 Identities=14% Similarity=0.252 Sum_probs=63.1
Q ss_pred cceeEEEecCHHHHHHHHH----c---CCCEEEecCCCC---CCCCCC--CHHHHHHHHhhCC---CcEEEE--EccCCC
Q psy7930 9 KTTLEVCVDSVASALAAVR----G---GADRLELCAALS---EGGLTP--TLGLYRVIKRLVL---VPVFVM--IRVRAG 71 (146)
Q Consensus 9 ~~~lEvcv~s~~~a~~A~~----~---GAdRIELc~~l~---~GGlTP--S~g~i~~~~~~~~---ipv~vM--IRP~R~ 71 (146)
+.++=+-+-|.+++..|.+ . |||-|=+-.-.. --|.+| ....++++++.++ +||+++ |.|
T Consensus 101 ~~~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI~~--- 177 (755)
T PRK09517 101 HLELGLTIETLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGVGL--- 177 (755)
T ss_pred CCEEEEeCCCHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCCCH---
Confidence 3567888899998766432 2 599998875332 224444 5678888888887 999987 444
Q ss_pred CCcccCHHHHHHHHHHHHHHHHcCCCEEEE-eeecCCCCcCH-HHHHHHHHHh
Q psy7930 72 FDFVFSQAEKEIMALDCHQFVESGADGFVI-GALTGEQEIDI-EFIRQLKTII 122 (146)
Q Consensus 72 gdF~Ys~~E~~~M~~dI~~~~~~GadG~Vf-G~L~~dg~iD~-~~~~~Li~~a 122 (146)
+++..+++.|++||.+ +++.. .-|. +++++|.++.
T Consensus 178 --------------~~~~~~~~~Ga~giAvisai~~--a~d~~~a~~~l~~~~ 214 (755)
T PRK09517 178 --------------RNAAELAATGIDGLCVVSAIMA--AANPAAAARELRTAF 214 (755)
T ss_pred --------------HHHHHHHHcCCCEEEEehHhhC--CCCHHHHHHHHHHHH
Confidence 7899999999999854 44442 2232 3444455433
No 360
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=79.93 E-value=5.8 Score=33.73 Aligned_cols=80 Identities=11% Similarity=-0.042 Sum_probs=47.2
Q ss_pred EEEecCHHH----HHHHHHcC-CCEEEecCC-CC-CCC----CCC--CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHH
Q psy7930 13 EVCVDSVAS----ALAAVRGG-ADRLELCAA-LS-EGG----LTP--TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQA 79 (146)
Q Consensus 13 Evcv~s~~~----a~~A~~~G-AdRIELc~~-l~-~GG----lTP--S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~ 79 (146)
=|...|.++ +..+++.| ||-|||+-+ .. .|| ..| ...+++.+++.+++||.|=|.| +. +..
T Consensus 98 Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKlsp-----~~-~~~ 171 (310)
T PRK02506 98 SVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYFTKPLGVKLPP-----YF-DIV 171 (310)
T ss_pred EEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhcCCccEEecCC-----CC-CHH
Confidence 344445433 44455667 999999743 11 222 122 2456777777889999999999 22 444
Q ss_pred HHHHHHHHHHHHHHcCCCEEEE
Q psy7930 80 EKEIMALDCHQFVESGADGFVI 101 (146)
Q Consensus 80 E~~~M~~dI~~~~~~GadG~Vf 101 (146)
++... ...+.+.|++|++.
T Consensus 172 ~~a~~---~~~~~~~g~~~i~~ 190 (310)
T PRK02506 172 HFDQA---AAIFNKFPLAFVNC 190 (310)
T ss_pred HHHHH---HHHhCcCceEEEEE
Confidence 55442 23445667777654
No 361
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=79.91 E-value=4.4 Score=34.31 Aligned_cols=94 Identities=18% Similarity=0.097 Sum_probs=59.9
Q ss_pred cccceeEEEecCHHH-----HHHHHHcCCCEEEecCCCCCCCCCC-CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHH
Q psy7930 7 WNKTTLEVCVDSVAS-----ALAAVRGGADRLELCAALSEGGLTP-TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAE 80 (146)
Q Consensus 7 ~~~~~lEvcv~s~~~-----a~~A~~~GAdRIELc~~l~~GGlTP-S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E 80 (146)
.-+++||.|.-+-++ +..|.++|||-|--++....+|.|| ...+|+++.+..+.+-.|=|-+ -|| .=|-++
T Consensus 133 ~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~~~vgIKA-sGG--Irt~~~ 209 (257)
T PRK05283 133 LLKVIIETGELKDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVAKTVGFKP-AGG--VRTAED 209 (257)
T ss_pred eEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEc-cCC--CCCHHH
Confidence 346789999777654 3468899999999999998899888 4566666654444555667788 777 223344
Q ss_pred HHHHHHHHHHHHH---cCCCEEEEee
Q psy7930 81 KEIMALDCHQFVE---SGADGFVIGA 103 (146)
Q Consensus 81 ~~~M~~dI~~~~~---~GadG~VfG~ 103 (146)
...|.+-.+...- +-.+-|=||+
T Consensus 210 A~~~i~ag~~~lg~~~~~~~~fR~G~ 235 (257)
T PRK05283 210 AAQYLALADEILGADWADARHFRFGA 235 (257)
T ss_pred HHHHHHHHHHHhChhhcCcccEeeeh
Confidence 4444444333211 1234555554
No 362
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=79.75 E-value=8.4 Score=38.80 Aligned_cols=66 Identities=21% Similarity=0.189 Sum_probs=48.9
Q ss_pred HHHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930 21 SALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG 98 (146)
Q Consensus 21 ~a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG 98 (146)
-+..+++.|||+|-|++- .|-+||. +.+++.+++.+++||++.--- ..|--. .-...+.++|||.
T Consensus 694 ~ak~l~~~Gad~I~ikDt--~Gll~P~~~~~Lv~~lk~~~~~pi~~H~Hd-t~Gla~----------an~laA~eaGad~ 760 (1143)
T TIGR01235 694 LAVELEKAGAHILGIKDM--AGLLKPAAAKLLIKALREKTDLPIHFHTHD-TSGIAV----------ASMLAAVEAGVDV 760 (1143)
T ss_pred HHHHHHHcCCCEEEECCC--cCCcCHHHHHHHHHHHHHhcCCeEEEEECC-CCCcHH----------HHHHHHHHhCCCE
Confidence 477789999999999994 7999995 679999999889999987765 444221 2234456777764
Q ss_pred E
Q psy7930 99 F 99 (146)
Q Consensus 99 ~ 99 (146)
|
T Consensus 761 v 761 (1143)
T TIGR01235 761 V 761 (1143)
T ss_pred E
Confidence 3
No 363
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=79.68 E-value=8.1 Score=33.16 Aligned_cols=69 Identities=20% Similarity=0.285 Sum_probs=45.1
Q ss_pred cCHHHHHHHHHcCCCEEEecCCCCCCCCC-----------------------CCHHHHHHHHh-hCCCcEEEEEccCCCC
Q psy7930 17 DSVASALAAVRGGADRLELCAALSEGGLT-----------------------PTLGLYRVIKR-LVLVPVFVMIRVRAGF 72 (146)
Q Consensus 17 ~s~~~a~~A~~~GAdRIELc~~l~~GGlT-----------------------PS~g~i~~~~~-~~~ipv~vMIRP~R~g 72 (146)
.+.+.+...++.|+|-|++-. .||++ |+...+.++++ ..++||.+ -||
T Consensus 191 ~~~~~a~~L~~aGvd~I~Vsg---~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIa-----sGG 262 (333)
T TIGR02151 191 ISKEVAKLLADAGVSAIDVAG---AGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIA-----SGG 262 (333)
T ss_pred CCHHHHHHHHHcCCCEEEECC---CCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEE-----ECC
Confidence 578999999999999999964 35643 11223444444 34566433 233
Q ss_pred CcccCHHHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930 73 DFVFSQAEKEIMALDCHQFVESGADGFVIG 102 (146)
Q Consensus 73 dF~Ys~~E~~~M~~dI~~~~~~GadG~VfG 102 (146)
+... .|+..+..+|||+|-+|
T Consensus 263 -I~~~--------~di~kaLalGAd~V~ig 283 (333)
T TIGR02151 263 -LRTG--------LDVAKAIALGADAVGMA 283 (333)
T ss_pred -CCCH--------HHHHHHHHhCCCeehhh
Confidence 3322 57777888999999886
No 364
>KOG3008|consensus
Probab=79.62 E-value=4 Score=34.87 Aligned_cols=53 Identities=26% Similarity=0.350 Sum_probs=42.7
Q ss_pred ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEcc
Q psy7930 10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRV 68 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP 68 (146)
+.+||-+.|.+++..|.+.|||||=| +|+..-|+.|....++ .+-|+++..-.
T Consensus 198 ~kvEVEc~sl~Ea~Ea~Eagad~IML-DNfk~~~l~~~a~vlk-----~K~~~e~~~e~ 250 (300)
T KOG3008|consen 198 LKVEVECSSLQEAVEAAEAGADLIML-DNFKPEELHPTATVLK-----AKFPSEVAVEA 250 (300)
T ss_pred eEEEEEeccHHHHHHHHHhcccEEee-ccccCcccccchHHHh-----hcccHHHHhhc
Confidence 57899999999999999999999987 6788889999888775 23455555544
No 365
>PRK08005 epimerase; Validated
Probab=79.61 E-value=13 Score=30.44 Aligned_cols=86 Identities=15% Similarity=0.118 Sum_probs=55.5
Q ss_pred HHHHHHHHcCCCEEEec--CCCCCCCCCCCHHHHHHHHhhCCCc--EEEEEc-c--------CCCCCcccCHHH-HHHHH
Q psy7930 20 ASALAAVRGGADRLELC--AALSEGGLTPTLGLYRVIKRLVLVP--VFVMIR-V--------RAGFDFVFSQAE-KEIMA 85 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc--~~l~~GGlTPS~g~i~~~~~~~~ip--v~vMIR-P--------~R~gdF~Ys~~E-~~~M~ 85 (146)
+++....+.|+|.+-+= ++--+-.+|=+..+++.+++..++| ||.|+. | ..|.|...=..| -....
T Consensus 17 ~el~~l~~~g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~gad~It~H~Ea~~~~~ 96 (210)
T PRK08005 17 EALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPGWIFIHAESVQNPS 96 (210)
T ss_pred HHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhCCCEEEEcccCccCHH
Confidence 56777888899998763 2223333444567899999877654 899996 5 124454444444 23466
Q ss_pred HHHHHHHHcCCC-EEEEeeec
Q psy7930 86 LDCHQFVESGAD-GFVIGALT 105 (146)
Q Consensus 86 ~dI~~~~~~Gad-G~VfG~L~ 105 (146)
+-|+.+|++|.. |+++..-|
T Consensus 97 ~~l~~Ik~~G~k~GlAlnP~T 117 (210)
T PRK08005 97 EILADIRAIGAKAGLALNPAT 117 (210)
T ss_pred HHHHHHHHcCCcEEEEECCCC
Confidence 788889999985 66654433
No 366
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=79.58 E-value=37 Score=28.72 Aligned_cols=115 Identities=16% Similarity=0.160 Sum_probs=69.2
Q ss_pred EecCHHHHHHH----HHcCCCEEEecCC------CCCCCCCCC---------HHHHHHHHhhC---CCcEEEEEccCCC-
Q psy7930 15 CVDSVASALAA----VRGGADRLELCAA------LSEGGLTPT---------LGLYRVIKRLV---LVPVFVMIRVRAG- 71 (146)
Q Consensus 15 cv~s~~~a~~A----~~~GAdRIELc~~------l~~GGlTPS---------~g~i~~~~~~~---~ipv~vMIRP~R~- 71 (146)
-+++++-+.++ .++|||=|+-++- |..-|+++. ..+.++++... ++=|.-=|=| .|
T Consensus 41 l~~~Pe~V~~vH~~yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~VaGsiGP-~g~ 119 (304)
T PRK09485 41 LLENPELIYQVHLDYFRAGADCAITASYQATFQGFAARGLSEAEAEELIRRSVELAKEARDEFWAEKPLVAGSVGP-YGA 119 (304)
T ss_pred hccChHHHHHHHHHHHHhCCCEEEeeccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEecCC-ccc
Confidence 35677777777 6789999999873 334465532 22333333222 1223344456 44
Q ss_pred ---------CCcccCHHHHHHHHHH-HHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC----CCCeEEeecccC
Q psy7930 72 ---------FDFVFSQAEKEIMALD-CHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG----DRPITFHRAFDV 135 (146)
Q Consensus 72 ---------gdF~Ys~~E~~~M~~d-I~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~----~~~vtFHRAFD~ 135 (146)
|++..+.+|+.....+ ++.+.+.|+|.|+|--+. +.+-++..+++++ ++|+.....|+.
T Consensus 120 ~l~~~~~y~g~~~~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~~-----~~~E~~~~~~~~~~~~~~~pv~is~~~~~ 192 (304)
T PRK09485 120 YLADGSEYRGDYGLSEEELQDFHRPRIEALAEAGADLLACETIP-----NLDEAEALVELLKEEFPGVPAWLSFTLRD 192 (304)
T ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEeccC-----CHHHHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence 2334577888777655 667779999999998554 2333344444444 678877777763
No 367
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=79.41 E-value=14 Score=33.67 Aligned_cols=80 Identities=15% Similarity=0.214 Sum_probs=53.2
Q ss_pred eEEEec---CHHHHHHHHHcCCCEEEe-------cC-CCCCCCCCCCHHHHHHHH---hhCCCcEEEEEccCCCCCcccC
Q psy7930 12 LEVCVD---SVASALAAVRGGADRLEL-------CA-ALSEGGLTPTLGLYRVIK---RLVLVPVFVMIRVRAGFDFVFS 77 (146)
Q Consensus 12 lEvcv~---s~~~a~~A~~~GAdRIEL-------c~-~l~~GGlTPS~g~i~~~~---~~~~ipv~vMIRP~R~gdF~Ys 77 (146)
++|.++ +.+++..+.+.|||-|-. |. ..-.|--.|...-+..+. +..++||.. .|++.|+
T Consensus 267 ~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~via------dGgi~~~ 340 (475)
T TIGR01303 267 VPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWA------DGGVRHP 340 (475)
T ss_pred CeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEE------eCCCCCH
Confidence 566655 679999999999999983 32 223332223333333332 223777642 5668888
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeeec
Q psy7930 78 QAEKEIMALDCHQFVESGADGFVIGALT 105 (146)
Q Consensus 78 ~~E~~~M~~dI~~~~~~GadG~VfG~L~ 105 (146)
.||..+..+||+.+.+|-+=
T Consensus 341 --------~di~kala~GA~~vm~g~~~ 360 (475)
T TIGR01303 341 --------RDVALALAAGASNVMVGSWF 360 (475)
T ss_pred --------HHHHHHHHcCCCEEeechhh
Confidence 78999999999999999763
No 368
>PRK00915 2-isopropylmalate synthase; Validated
Probab=79.37 E-value=14 Score=33.71 Aligned_cols=68 Identities=22% Similarity=0.233 Sum_probs=43.8
Q ss_pred HHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhCC----CcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930 22 ALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLVL----VPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG 95 (146)
Q Consensus 22 a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~~----ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G 95 (146)
+..+.+.||++|-||+ ..|++||. ..+++.+++.++ +|+-+.--- +-.+.. .-...+.++|
T Consensus 155 ~~~~~~~Ga~~i~l~D--TvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HN---------D~GlAv--ANslaAv~aG 221 (513)
T PRK00915 155 VEAAIDAGATTINIPD--TVGYTTPEEFGELIKTLRERVPNIDKAIISVHCHN---------DLGLAV--ANSLAAVEAG 221 (513)
T ss_pred HHHHHHcCCCEEEEcc--CCCCCCHHHHHHHHHHHHHhCCCcccceEEEEecC---------CCCHHH--HHHHHHHHhC
Confidence 4567888999999999 48999995 667888877664 555443322 222332 3344455688
Q ss_pred CC---EEEEe
Q psy7930 96 AD---GFVIG 102 (146)
Q Consensus 96 ad---G~VfG 102 (146)
|+ |=+.|
T Consensus 222 a~~Vd~Tv~G 231 (513)
T PRK00915 222 ARQVECTING 231 (513)
T ss_pred CCEEEEEeec
Confidence 86 44555
No 369
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=79.23 E-value=6.8 Score=29.42 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=29.7
Q ss_pred HHHHcCCCEEEEe-eecCCCCcCH------HHHHHHHHHhCCCCeEEe
Q psy7930 90 QFVESGADGFVIG-ALTGEQEIDI------EFIRQLKTIIGDRPITFH 130 (146)
Q Consensus 90 ~~~~~GadG~VfG-~L~~dg~iD~------~~~~~Li~~a~~~~vtFH 130 (146)
.+++.++++||+| -++.||+... +..++|...- ++|+.|+
T Consensus 43 ~i~~~~~~~iVvGlP~~~dG~~~~~a~~v~~f~~~L~~~~-~~~v~~~ 89 (130)
T TIGR00250 43 LLKEWTPDKIVVGLPLNMDGTEGPLTERAQKFANRLEGRF-GVPVVLW 89 (130)
T ss_pred HHHHcCCCEEEEeccCCCCcCcCHHHHHHHHHHHHHHHHh-CCCEEEE
Confidence 5677899999999 5778998877 5555554433 7888775
No 370
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=79.00 E-value=14 Score=31.43 Aligned_cols=74 Identities=18% Similarity=0.158 Sum_probs=53.2
Q ss_pred ecCHHHHHHHHHcCCCEEEec--CC--CCCCCCCC--CHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930 16 VDSVASALAAVRGGADRLELC--AA--LSEGGLTP--TLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDC 88 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc--~~--l~~GGlTP--S~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI 88 (146)
-.|+++|..+.+-|+|-|-+- .. +..++ || .+..++++++.+ ++|+ |+ +||+ -+=.+++
T Consensus 153 ~t~peea~~f~~tgvD~LAv~iG~vHG~y~t~-~k~l~~e~L~~i~~~~~~iPl-Vl----hGGS--------Gi~~e~~ 218 (293)
T PRK07315 153 LAPIEDAKAMVETGIDFLAAGIGNIHGPYPEN-WEGLDLDHLEKLTEAVPGFPI-VL----HGGS--------GIPDDQI 218 (293)
T ss_pred CCCHHHHHHHHHcCCCEEeeccccccccCCCC-CCcCCHHHHHHHHHhccCCCE-EE----ECCC--------CCCHHHH
Confidence 479999999999999998776 22 01111 34 577899999998 5997 44 4653 1112678
Q ss_pred HHHHHcCCCEEEEee
Q psy7930 89 HQFVESGADGFVIGA 103 (146)
Q Consensus 89 ~~~~~~GadG~VfG~ 103 (146)
+.+.+.|+++|-++-
T Consensus 219 ~~~i~~Gi~KiNv~T 233 (293)
T PRK07315 219 QEAIKLGVAKVNVNT 233 (293)
T ss_pred HHHHHcCCCEEEEcc
Confidence 888999999998763
No 371
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=78.94 E-value=5.8 Score=32.83 Aligned_cols=63 Identities=22% Similarity=0.163 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930 19 VASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG 98 (146)
Q Consensus 19 ~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG 98 (146)
++-+.+-.++|||=|=... + .+...++++.+.++.|++++..| +. -+++.++++|+.-
T Consensus 158 I~R~~aY~eAGAD~ifi~~------~-~~~~~i~~~~~~~~~Pl~v~~~~---~~------------~~~~eL~~lGv~~ 215 (238)
T PF13714_consen 158 IERAKAYAEAGADMIFIPG------L-QSEEEIERIVKAVDGPLNVNPGP---GT------------LSAEELAELGVKR 215 (238)
T ss_dssp HHHHHHHHHTT-SEEEETT------S-SSHHHHHHHHHHHSSEEEEETTS---SS------------S-HHHHHHTTESE
T ss_pred HHHHHHHHHcCCCEEEeCC------C-CCHHHHHHHHHhcCCCEEEEcCC---CC------------CCHHHHHHCCCcE
Confidence 3456677889999876543 2 45566888888889999888866 22 4566778899999
Q ss_pred EEEee
Q psy7930 99 FVIGA 103 (146)
Q Consensus 99 ~VfG~ 103 (146)
+.+|.
T Consensus 216 v~~~~ 220 (238)
T PF13714_consen 216 VSYGN 220 (238)
T ss_dssp EEETS
T ss_pred EEEcH
Confidence 98885
No 372
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=78.45 E-value=3.9 Score=38.36 Aligned_cols=66 Identities=21% Similarity=0.214 Sum_probs=47.7
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD 97 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad 97 (146)
+-+..+.+.|||+|=|++ ..|-+||. +.+++.+++.+++||++.--- ..| +.. .-...+.++|||
T Consensus 158 ~~ak~l~~~Gad~I~IkD--taG~l~P~~v~~lv~alk~~~~ipi~~H~Hn-t~G--------la~--an~laAieaGad 224 (596)
T PRK14042 158 ELGKKLAEMGCDSIAIKD--MAGLLTPTVTVELYAGLKQATGLPVHLHSHS-TSG--------LAS--ICHYEAVLAGCN 224 (596)
T ss_pred HHHHHHHHcCCCEEEeCC--cccCCCHHHHHHHHHHHHhhcCCEEEEEeCC-CCC--------cHH--HHHHHHHHhCCC
Confidence 346677889999999999 47999994 779999999889998887655 444 111 223345677876
Q ss_pred E
Q psy7930 98 G 98 (146)
Q Consensus 98 G 98 (146)
-
T Consensus 225 ~ 225 (596)
T PRK14042 225 H 225 (596)
T ss_pred E
Confidence 4
No 373
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=78.34 E-value=15 Score=31.75 Aligned_cols=94 Identities=18% Similarity=0.166 Sum_probs=47.6
Q ss_pred HHHHHcCCCEEEecCCCCCCCCCCC-HHHHHHHHhh-CCCcEEEEEccCCCC--------------------------Cc
Q psy7930 23 LAAVRGGADRLELCAALSEGGLTPT-LGLYRVIKRL-VLVPVFVMIRVRAGF--------------------------DF 74 (146)
Q Consensus 23 ~~A~~~GAdRIELc~~l~~GGlTPS-~g~i~~~~~~-~~ipv~vMIRP~R~g--------------------------dF 74 (146)
..-.+.|.+.||..- -...|+ ...++.+.+. .+..+.+..|+ +.. .|
T Consensus 30 ~~L~~~Gv~~IEvG~----p~~~~~~~e~i~~i~~~~~~~~i~~~~r~-~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~ 104 (365)
T TIGR02660 30 RALDEAGVDELEVGI----PAMGEEERAVIRAIVALGLPARLMAWCRA-RDADIEAAARCGVDAVHISIPVSDLQIEAKL 104 (365)
T ss_pred HHHHHcCCCEEEEeC----CCCCHHHHHHHHHHHHcCCCcEEEEEcCC-CHHHHHHHHcCCcCEEEEEEccCHHHHHHHh
Confidence 334566888888841 122333 3556666554 23456666666 310 01
Q ss_pred ccCHHH-HHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930 75 VFSQAE-KEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 75 ~Ys~~E-~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~ 123 (146)
.-|.+| ++.+.+-|+.+++.|.. +.|++- ..+..|.+.+.++++.+.
T Consensus 105 ~~s~~e~l~~~~~~i~~ak~~g~~-v~~~~e-d~~r~~~~~l~~~~~~~~ 152 (365)
T TIGR02660 105 RKDRAWVLERLARLVSFARDRGLF-VSVGGE-DASRADPDFLVELAEVAA 152 (365)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCE-EEEeec-CCCCCCHHHHHHHHHHHH
Confidence 122233 34444556666666643 555532 234566666666665554
No 374
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=78.15 E-value=3.8 Score=36.13 Aligned_cols=82 Identities=22% Similarity=0.150 Sum_probs=62.8
Q ss_pred cccceeEEEecCHHHHHHHHHcCCCEEEecC--CCCCCCCCCCHHHHHHHHhhCC--CcEEEEEccCCCCCcccCHHHHH
Q psy7930 7 WNKTTLEVCVDSVASALAAVRGGADRLELCA--ALSEGGLTPTLGLYRVIKRLVL--VPVFVMIRVRAGFDFVFSQAEKE 82 (146)
Q Consensus 7 ~~~~~lEvcv~s~~~a~~A~~~GAdRIELc~--~l~~GGlTPS~g~i~~~~~~~~--ipv~vMIRP~R~gdF~Ys~~E~~ 82 (146)
|...+...=+.+++|+..|..-|++-||.-. +....|--||...+.++++.++ +||.+ .|++..-
T Consensus 217 ~~~~lv~kGV~~~~D~~~a~~tg~~~I~vsnhggrqlD~g~st~~~L~ei~~av~~~~~vi~------dGGiR~G----- 285 (360)
T COG1304 217 WAGPLVLKGILAPEDAAGAGGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDRIEVIA------DGGIRSG----- 285 (360)
T ss_pred cCCcHHHhCCCCHHHHHhhccCCceEEEEEcCCCccccCCCChHHHHHHHHHHhCCCeEEEe------cCCCCCH-----
Confidence 5555666668889999999999999999986 3455566788888888888876 55543 2335443
Q ss_pred HHHHHHHHHHHcCCCEEEEe
Q psy7930 83 IMALDCHQFVESGADGFVIG 102 (146)
Q Consensus 83 ~M~~dI~~~~~~GadG~VfG 102 (146)
.|+..+..+|||.+-+|
T Consensus 286 ---~Dv~KAlALGA~~v~ig 302 (360)
T COG1304 286 ---LDVAKALALGADAVGIG 302 (360)
T ss_pred ---HHHHHHHHhCCchhhhh
Confidence 68999999999998877
No 375
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=78.03 E-value=19 Score=30.46 Aligned_cols=77 Identities=17% Similarity=0.172 Sum_probs=53.6
Q ss_pred EEecCHHHHHHHHH-cCCCEEEec-CC---CCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930 14 VCVDSVASALAAVR-GGADRLELC-AA---LSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDC 88 (146)
Q Consensus 14 vcv~s~~~a~~A~~-~GAdRIELc-~~---l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI 88 (146)
....|++++..+++ .|+|-|-.- .+ ...+.-.-.+..++++++.+++|++ + +||+=.= .+++
T Consensus 150 ~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv-~----hGgSGi~--------~e~i 216 (282)
T TIGR01859 150 AELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLV-L----HGASGIP--------EEQI 216 (282)
T ss_pred cccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEE-E----ECCCCCC--------HHHH
Confidence 44679999999997 899987752 22 1112111147789999999999984 3 4644221 3678
Q ss_pred HHHHHcCCCEEEEee
Q psy7930 89 HQFVESGADGFVIGA 103 (146)
Q Consensus 89 ~~~~~~GadG~VfG~ 103 (146)
+.+.++|+++|-+|-
T Consensus 217 ~~~i~~Gi~kiNv~T 231 (282)
T TIGR01859 217 KKAIKLGIAKINIDT 231 (282)
T ss_pred HHHHHcCCCEEEECc
Confidence 888999999998873
No 376
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=77.98 E-value=5.1 Score=33.54 Aligned_cols=87 Identities=15% Similarity=0.068 Sum_probs=56.4
Q ss_pred HHHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930 21 SALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD 97 (146)
Q Consensus 21 ~a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad 97 (146)
-+..+.+.||++|-||+. .|-+||. +.+++.+++.. ++|+.+-..- .-| +. ..-...+.++|++
T Consensus 154 ~~~~~~~~Ga~~i~l~DT--~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn-d~G--------lA--~AN~laA~~aGa~ 220 (274)
T cd07938 154 VAERLLDLGCDEISLGDT--IGVATPAQVRRLLEAVLERFPDEKLALHFHD-TRG--------QA--LANILAALEAGVR 220 (274)
T ss_pred HHHHHHHcCCCEEEECCC--CCccCHHHHHHHHHHHHHHCCCCeEEEEECC-CCC--------hH--HHHHHHHHHhCCC
Confidence 356678899999999994 7889994 67888888876 4788776665 333 11 1334456678887
Q ss_pred EEE---Eeee------cCCCCcCHHHHHHHHH
Q psy7930 98 GFV---IGAL------TGEQEIDIEFIRQLKT 120 (146)
Q Consensus 98 G~V---fG~L------~~dg~iD~~~~~~Li~ 120 (146)
.|= -|.= -.-|..+.+.+-..++
T Consensus 221 ~id~t~~GlGgcpfa~eraGN~~~E~lv~~L~ 252 (274)
T cd07938 221 RFDSSVGGLGGCPFAPGATGNVATEDLVYMLE 252 (274)
T ss_pred EEEEeccccCCCCCCCCccCCcCHHHHHHHHH
Confidence 443 2210 1356777775554443
No 377
>PRK06801 hypothetical protein; Provisional
Probab=77.91 E-value=14 Score=31.45 Aligned_cols=75 Identities=21% Similarity=0.168 Sum_probs=55.2
Q ss_pred EEecCHHHHHHHH-HcCCCEEEecCCCCCCCCC-----CCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHH
Q psy7930 14 VCVDSVASALAAV-RGGADRLELCAALSEGGLT-----PTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALD 87 (146)
Q Consensus 14 vcv~s~~~a~~A~-~~GAdRIELc~~l~~GGlT-----PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~d 87 (146)
.+-.+++++.... +-|+|-+-+ +--...|.. ..+..++++++.+++|+ || +||+=. + .++
T Consensus 153 ~~~T~pe~a~~f~~~tgvD~LAv-aiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PL-Vl----HGGSgi-~-------~e~ 218 (286)
T PRK06801 153 AKFTDPQLARDFVDRTGIDALAV-AIGNAHGKYKGEPKLDFARLAAIHQQTGLPL-VL----HGGSGI-S-------DAD 218 (286)
T ss_pred ccCCCHHHHHHHHHHHCcCEEEe-ccCCCCCCCCCCCCCCHHHHHHHHHhcCCCE-EE----ECCCCC-C-------HHH
Confidence 4556779999988 789999998 544444433 37889999999999997 44 466411 1 267
Q ss_pred HHHHHHcCCCEEEEe
Q psy7930 88 CHQFVESGADGFVIG 102 (146)
Q Consensus 88 I~~~~~~GadG~VfG 102 (146)
++.+.++|+++|-++
T Consensus 219 ~~~~i~~Gi~KINv~ 233 (286)
T PRK06801 219 FRRAIELGIHKINFY 233 (286)
T ss_pred HHHHHHcCCcEEEeh
Confidence 788899999999775
No 378
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=77.87 E-value=0.92 Score=37.17 Aligned_cols=78 Identities=14% Similarity=0.133 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCCEEEecCCC-CCC-----CCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHH
Q psy7930 19 VASALAAVRGGADRLELCAAL-SEG-----GLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFV 92 (146)
Q Consensus 19 ~~~a~~A~~~GAdRIELc~~l-~~G-----GlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~ 92 (146)
.-++..|.+. ..|...-++ ..+ -=+|...+++...+..+||+...=-+ |+ .++|.+.+. ..++
T Consensus 14 ~lAl~~a~~~--~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~---g~---~~~~~~~l~---~~l~ 82 (218)
T PF01902_consen 14 CLALYRALRQ--HEVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTS---GD---EEDYVEDLK---EALK 82 (218)
T ss_dssp HHHHHHHHHT---EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE---------CCCHHHHHH---HHHC
T ss_pred HHHHHHHHHh--CCccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEcc---Cc---cchhhHHHH---HHHH
Confidence 3344556666 555433322 122 22466778888888899997543323 32 344555554 3457
Q ss_pred HcCCCEEEEeeecCC
Q psy7930 93 ESGADGFVIGALTGE 107 (146)
Q Consensus 93 ~~GadG~VfG~L~~d 107 (146)
++|++++|||.+..+
T Consensus 83 ~~~v~~vv~GdI~~~ 97 (218)
T PF01902_consen 83 ELKVEAVVFGDIDSE 97 (218)
T ss_dssp TC--SEEE--TTS-H
T ss_pred HcCCCEEEECcCCcH
Confidence 788999999998654
No 379
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=77.81 E-value=18 Score=30.78 Aligned_cols=103 Identities=18% Similarity=0.215 Sum_probs=73.3
Q ss_pred ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCC-cEEEEEccCC--CC------CcccCHHHHH--HH
Q psy7930 16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLV-PVFVMIRVRA--GF------DFVFSQAEKE--IM 84 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~i-pv~vMIRP~R--~g------dF~Ys~~E~~--~M 84 (146)
+-|++++....++|||-|-++++- --.+.+|+++.+..+. -|.|-|-++| +| =|+|+..|-. .-
T Consensus 83 I~s~eD~~~ll~aGADKVSINsaA-----v~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~ 157 (256)
T COG0107 83 IRSVEDARKLLRAGADKVSINSAA-----VKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDA 157 (256)
T ss_pred cCCHHHHHHHHHcCCCeeeeChhH-----hcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCH
Confidence 358999999999999999999731 1235689888887754 4667776644 22 2344443331 11
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhC
Q psy7930 85 ALDCHQFVESGADGFVIGALTGEQE---IDIEFIRQLKTIIG 123 (146)
Q Consensus 85 ~~dI~~~~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~ 123 (146)
.+=.+.+.++||--+++=..+.||+ .|.+.++.+.++.+
T Consensus 158 ~~Wa~~~e~~GAGEIlLtsmD~DGtk~GyDl~l~~~v~~~v~ 199 (256)
T COG0107 158 VEWAKEVEELGAGEILLTSMDRDGTKAGYDLELTRAVREAVN 199 (256)
T ss_pred HHHHHHHHHcCCceEEEeeecccccccCcCHHHHHHHHHhCC
Confidence 2335667789999999999999985 89999988877764
No 380
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=77.80 E-value=18 Score=29.80 Aligned_cols=84 Identities=20% Similarity=0.221 Sum_probs=59.9
Q ss_pred HHHHHHHHHcCCCEEEecCCCCCCCC-C-CCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc--
Q psy7930 19 VASALAAVRGGADRLELCAALSEGGL-T-PTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES-- 94 (146)
Q Consensus 19 ~~~a~~A~~~GAdRIELc~~l~~GGl-T-PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~-- 94 (146)
.+-+...++.|+.+|=+.+ +...|+ + |...+++.+.+..++||.+ -|| - =|- +|+..++++
T Consensus 147 ~e~~~~~~~~g~~~ii~td-I~rdGt~~G~d~el~~~l~~~~~~pvia-----sGG-v-~s~-------~Dl~~l~~~~~ 211 (241)
T PRK14114 147 VSLLKRLKEYGLEEIVHTE-IEKDGTLQEHDFSLTRKIAIEAEVKVFA-----AGG-I-SSE-------NSLKTAQRVHR 211 (241)
T ss_pred HHHHHHHHhcCCCEEEEEe-echhhcCCCcCHHHHHHHHHHCCCCEEE-----ECC-C-CCH-------HHHHHHHhccc
Confidence 3446778888999986554 444443 4 9999999999988889865 355 2 222 566677776
Q ss_pred ---C-CCEEEEeeecCCCCcCHHHHHH
Q psy7930 95 ---G-ADGFVIGALTGEQEIDIEFIRQ 117 (146)
Q Consensus 95 ---G-adG~VfG~L~~dg~iD~~~~~~ 117 (146)
| ++|+++|=-=-+|.|+.+.+.+
T Consensus 212 ~~~g~v~gvivg~Al~~g~i~~~e~~~ 238 (241)
T PRK14114 212 ETNGLLKGVIVGRAFLEGILTVEVMKR 238 (241)
T ss_pred ccCCcEEEEEEehHHHCCCCCHHHHHH
Confidence 6 9999999655688999876543
No 381
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=77.62 E-value=7.1 Score=33.30 Aligned_cols=65 Identities=26% Similarity=0.256 Sum_probs=41.4
Q ss_pred cCCCEEEecCC-CCC-C---CCCC--CHHHHHHHHhhCC-----CcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930 28 GGADRLELCAA-LSE-G---GLTP--TLGLYRVIKRLVL-----VPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG 95 (146)
Q Consensus 28 ~GAdRIELc~~-l~~-G---GlTP--S~g~i~~~~~~~~-----ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G 95 (146)
.+||-|||+-+ ... | +..| -..+++.+++.++ +||.|=|+| . ++.+|+..+ ++.+.++|
T Consensus 159 ~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~-~-----~~~~~~~~i---a~~l~~aG 229 (327)
T cd04738 159 PYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAP-D-----LSDEELEDI---ADVALEHG 229 (327)
T ss_pred hhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCC-C-----CCHHHHHHH---HHHHHHcC
Confidence 35999999742 111 2 1222 1356677777665 999988888 3 344555443 45678899
Q ss_pred CCEEEE
Q psy7930 96 ADGFVI 101 (146)
Q Consensus 96 adG~Vf 101 (146)
+|||++
T Consensus 230 ad~I~~ 235 (327)
T cd04738 230 VDGIIA 235 (327)
T ss_pred CcEEEE
Confidence 999995
No 382
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=77.53 E-value=19 Score=33.12 Aligned_cols=45 Identities=27% Similarity=0.380 Sum_probs=35.8
Q ss_pred HHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhCCCcEEEEEcc
Q psy7930 22 ALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLVLVPVFVMIRV 68 (146)
Q Consensus 22 a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~~ipv~vMIRP 68 (146)
+..+.+.||+||-||+. .|.+||. ..+++.+++.+++||.+.---
T Consensus 164 ~~~~~~~Gad~i~l~DT--vG~~~P~~v~~li~~l~~~~~v~i~~H~HN 210 (524)
T PRK12344 164 LKAAAEAGADWVVLCDT--NGGTLPHEVAEIVAEVRAAPGVPLGIHAHN 210 (524)
T ss_pred HHHHHhCCCCeEEEccC--CCCcCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 45678899999999995 7999995 678888888888887654433
No 383
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=77.50 E-value=11 Score=31.05 Aligned_cols=88 Identities=15% Similarity=0.048 Sum_probs=63.1
Q ss_pred EecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHH
Q psy7930 15 CVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVE 93 (146)
Q Consensus 15 cv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~ 93 (146)
...|+.-+..+...|+|-|-|=- +.|-. +...+..+.... ..+.-+++|+ ...+.. +|+.+.+
T Consensus 19 ~~~~p~~~e~~~~~g~D~v~iDl--EH~~~--~~~~~~~~~~a~~~~g~~~~VRv-~~~~~~-----------~i~~~Ld 82 (249)
T TIGR02311 19 GLADPYAAEICAGAGFDWLLIDG--EHAPN--DVRTILSQLQALAPYPSSPVVRP-AIGDPV-----------LIKQLLD 82 (249)
T ss_pred eCCCcHHHHHHHhcCCCEEEEec--cCCCC--CHHHHHHHHHHHHhcCCCcEEEC-CCCCHH-----------HHHHHhC
Confidence 45677888889999999988753 34433 544444444443 3455779998 566532 8999999
Q ss_pred cCCCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930 94 SGADGFVIGALTGEQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 94 ~GadG~VfG~L~~dg~iD~~~~~~Li~~a~ 123 (146)
.|++||++=-.+ ..+..++++++++
T Consensus 83 ~Ga~gIivP~v~-----s~e~a~~~v~~~~ 107 (249)
T TIGR02311 83 IGAQTLLVPMIE-----TAEQAEAAVAATR 107 (249)
T ss_pred CCCCEEEecCcC-----CHHHHHHHHHHcC
Confidence 999999998665 3567889999987
No 384
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=77.33 E-value=23 Score=30.36 Aligned_cols=64 Identities=17% Similarity=0.127 Sum_probs=42.8
Q ss_pred HcCCCEEEecCCC-----CCCCCCCCH----HHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930 27 RGGADRLELCAAL-----SEGGLTPTL----GLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD 97 (146)
Q Consensus 27 ~~GAdRIELc~~l-----~~GGlTPS~----g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad 97 (146)
..+||-+||.=+. ..+|-+ ++ ..++.+++.+++||.|=+.+ |.. ..++++.+.++|+|
T Consensus 139 ~i~adal~i~ln~~q~~~~p~g~~-~f~~~le~i~~i~~~~~vPVivK~~g-----~g~-------~~~~a~~L~~aGvd 205 (333)
T TIGR02151 139 MIEADALAIHLNVLQELVQPEGDR-NFKGWLEKIAEICSQLSVPVIVKEVG-----FGI-------SKEVAKLLADAGVS 205 (333)
T ss_pred HhcCCCEEEcCcccccccCCCCCc-CHHHHHHHHHHHHHhcCCCEEEEecC-----CCC-------CHHHHHHHHHcCCC
Confidence 3477777775431 223443 34 56888888889998765444 222 25778889999999
Q ss_pred EEEEee
Q psy7930 98 GFVIGA 103 (146)
Q Consensus 98 G~VfG~ 103 (146)
+|+++-
T Consensus 206 ~I~Vsg 211 (333)
T TIGR02151 206 AIDVAG 211 (333)
T ss_pred EEEECC
Confidence 999975
No 385
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=77.27 E-value=26 Score=29.18 Aligned_cols=100 Identities=15% Similarity=0.079 Sum_probs=55.1
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCCC-----HHHHHHHHhhCC--CcEEEEEccCCCCCcccCHHHHHHHHHHHHHHH
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTPT-----LGLYRVIKRLVL--VPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFV 92 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS-----~g~i~~~~~~~~--ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~ 92 (146)
..+..+.+.|..-++-.. +.+|. ...+..+++..+ +-+..+..| +.+. |+. +.+++-++.+.
T Consensus 100 ~~~~~~l~~GvTtv~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~---~~~~~~v~~~~ 168 (398)
T cd01293 100 RALELAIAHGTTAIRTHV-----DVDPAAGLKALEALLELREEWADLIDLQIVAFP-QHGL--LST---PGGEELMREAL 168 (398)
T ss_pred HHHHHHHHcChhheeeee-----cccccccchHHHHHHHHHHHhhccceEEEEecc-Cccc--cCC---CCHHHHHHHHH
Confidence 345667788888875322 22332 233444444333 222233345 4442 333 33445566677
Q ss_pred HcCCCEEEEeeecCC--CCcCHHHHHHHHHHhC--CCCeEEeec
Q psy7930 93 ESGADGFVIGALTGE--QEIDIEFIRQLKTIIG--DRPITFHRA 132 (146)
Q Consensus 93 ~~GadG~VfG~L~~d--g~iD~~~~~~Li~~a~--~~~vtFHRA 132 (146)
+.|++ ++.| +... .....+.++++++.|+ ++++++|-.
T Consensus 169 ~~g~~-~~~~-~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~ 210 (398)
T cd01293 169 KMGAD-VVGG-IPPAEIDEDGEESLDTLFELAQEHGLDIDLHLD 210 (398)
T ss_pred HhCCC-EEeC-CCCCcCCccHHHHHHHHHHHHHHhCCCCEEEeC
Confidence 77774 4433 3333 2456788888888886 899999964
No 386
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=77.21 E-value=45 Score=28.44 Aligned_cols=99 Identities=17% Similarity=0.163 Sum_probs=60.8
Q ss_pred HHHHHHHcCCCEEEecC--------CCCCCCCCCCHHHHHHHHhh---C-CCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930 21 SALAAVRGGADRLELCA--------ALSEGGLTPTLGLYRVIKRL---V-LVPVFVMIRVRAGFDFVFSQAEKEIMALDC 88 (146)
Q Consensus 21 ~a~~A~~~GAdRIELc~--------~l~~GGlTPS~g~i~~~~~~---~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI 88 (146)
-+...++.|+.=|-|=+ .+.-..+.|.-..+.+++.. . +.+..++-|- .. | ....++.-.+=.
T Consensus 93 tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART--Da-~--~~~g~deAI~Ra 167 (285)
T TIGR02317 93 TVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIART--DA-R--AVEGLDAAIERA 167 (285)
T ss_pred HHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEc--Cc-c--cccCHHHHHHHH
Confidence 36677888998777744 33222355655555555432 2 5667777775 11 1 111244444558
Q ss_pred HHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEEe
Q psy7930 89 HQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFH 130 (146)
Q Consensus 89 ~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtFH 130 (146)
+.++++|||++-+=.+ -+.+.++++.+... .|+.+.
T Consensus 168 ~ay~~AGAD~vfi~g~-----~~~e~i~~~~~~i~-~Pl~~n 203 (285)
T TIGR02317 168 KAYVEAGADMIFPEAL-----TSLEEFRQFAKAVK-VPLLAN 203 (285)
T ss_pred HHHHHcCCCEEEeCCC-----CCHHHHHHHHHhcC-CCEEEE
Confidence 8899999999888443 46788888888764 565443
No 387
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed
Probab=77.17 E-value=1.5 Score=36.87 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=49.1
Q ss_pred CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEE----eeecCCCCc-CHHHHHHHHHHhCCCCeEEe
Q psy7930 59 LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVI----GALTGEQEI-DIEFIRQLKTIIGDRPITFH 130 (146)
Q Consensus 59 ~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~Vf----G~L~~dg~i-D~~~~~~Li~~a~~~~vtFH 130 (146)
+.||.+|-|- |-...|...++. ...-|+.++++|++-++. |.|+++-.. |.-..+..+...+.-+.||.
T Consensus 50 g~~v~~l~Rh--Gr~H~y~~~~i~-~~a~i~aLk~LGvk~iI~tnavGsl~~~~~pGDlVv~~D~I~~tg~~p~t~~ 123 (267)
T PRK08564 50 GVEVAFLPRH--GRGHRIPPHKIN-YRANIWALKELGVEWVIAVSAVGSLREDYKPGDFVIPDQFIDMTKKREYTFY 123 (267)
T ss_pred CEEEEEEeCC--CCCcccCCccCc-chHHHHHHHHCCCcEEEEeccccccCCCCCCCCEEeehhhhccCCCCCcccC
Confidence 6677777654 545567777877 578899999999999987 999988432 33344555666666667765
No 388
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=76.95 E-value=14 Score=31.08 Aligned_cols=85 Identities=21% Similarity=0.255 Sum_probs=56.6
Q ss_pred HHHHHHHcCCCEEEecCCC-CCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEE
Q psy7930 21 SALAAVRGGADRLELCAAL-SEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGF 99 (146)
Q Consensus 21 ~a~~A~~~GAdRIELc~~l-~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~ 99 (146)
=|..-+++||+=|-.+..- ..|| |+..++.+++.+++||-. -||..++.+ |...+.+|||+|
T Consensus 73 ~a~~y~~~GA~aiSVlTe~~~F~G---s~~dL~~v~~~~~~PvL~-------KDFIid~~Q-------I~eA~~~GADaV 135 (254)
T PF00218_consen 73 IAKAYEEAGAAAISVLTEPKFFGG---SLEDLRAVRKAVDLPVLR-------KDFIIDPYQ-------IYEARAAGADAV 135 (254)
T ss_dssp HHHHHHHTT-SEEEEE--SCCCHH---HHHHHHHHHHHSSS-EEE-------ES---SHHH-------HHHHHHTT-SEE
T ss_pred HHHHHHhcCCCEEEEECCCCCCCC---CHHHHHHHHHHhCCCccc-------ccCCCCHHH-------HHHHHHcCCCEe
Confidence 3455677899999988753 3444 788999999999999843 589988765 566899999998
Q ss_pred EEeeecCCCCcCHHHHHHHHHHhC--CCC
Q psy7930 100 VIGALTGEQEIDIEFIRQLKTIIG--DRP 126 (146)
Q Consensus 100 VfG~L~~dg~iD~~~~~~Li~~a~--~~~ 126 (146)
.+=+ .-++.+.+++|++.|+ ||.
T Consensus 136 LLI~----~~L~~~~l~~l~~~a~~lGle 160 (254)
T PF00218_consen 136 LLIA----AILSDDQLEELLELAHSLGLE 160 (254)
T ss_dssp EEEG----GGSGHHHHHHHHHHHHHTT-E
T ss_pred ehhH----HhCCHHHHHHHHHHHHHcCCC
Confidence 6522 2466678999999998 444
No 389
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=76.84 E-value=9.1 Score=29.02 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=29.0
Q ss_pred HHHHHcCCCEEEEe-eecCCCCcCH------HHHHHHHHHhCCCCeEEe
Q psy7930 89 HQFVESGADGFVIG-ALTGEQEIDI------EFIRQLKTIIGDRPITFH 130 (146)
Q Consensus 89 ~~~~~~GadG~VfG-~L~~dg~iD~------~~~~~Li~~a~~~~vtFH 130 (146)
+.+++.++++||+| -++.||+... +..++|.+.. ++++.|+
T Consensus 48 ~~i~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~-~~~v~~~ 95 (138)
T PRK00109 48 KLIKEWQPDGLVVGLPLNMDGTEGPRTERARKFANRLEGRF-GLPVVLV 95 (138)
T ss_pred HHHHHhCCCEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHh-CCCEEEE
Confidence 35677899999999 5777998866 4444444433 6788774
No 390
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=76.69 E-value=26 Score=28.89 Aligned_cols=81 Identities=20% Similarity=0.114 Sum_probs=57.7
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCC--CCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHH---Hc
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGL--TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFV---ES 94 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGl--TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~---~~ 94 (146)
+=+....+.|+.+|=+.+ ....|+ =|...+++++++..++||.+ -|| .. |. +|++.++ +.
T Consensus 153 ~~~~~~~~~g~~~ii~td-I~~dGt~~G~d~~l~~~l~~~~~~pvia-----sGG-v~-s~-------eDl~~l~~l~~~ 217 (243)
T TIGR01919 153 VLERLLDSGGCSRVVVTD-SKKDGLSGGPNELLLEVVAARTDAIVAA-----SGG-SS-LL-------DDLRAIKYLDEG 217 (243)
T ss_pred HHHHHHHhCCCCEEEEEe-cCCcccCCCcCHHHHHHHHhhCCCCEEE-----ECC-cC-CH-------HHHHHHHhhccC
Confidence 445667888999996554 444443 48999999999988899865 354 22 33 3444444 56
Q ss_pred CCCEEEEeeecCCCCcCHHHH
Q psy7930 95 GADGFVIGALTGEQEIDIEFI 115 (146)
Q Consensus 95 GadG~VfG~L~~dg~iD~~~~ 115 (146)
|++|+++|-.=-+|.|+.+..
T Consensus 218 Gv~gvivg~Al~~g~i~~~~~ 238 (243)
T TIGR01919 218 GVSVAIGGKLLYARFFTLEAA 238 (243)
T ss_pred CeeEEEEhHHHHcCCCCHHHH
Confidence 999999998767899998854
No 391
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=76.65 E-value=27 Score=29.34 Aligned_cols=95 Identities=22% Similarity=0.346 Sum_probs=61.6
Q ss_pred CHHHHHHHH----HcCCCEEEecCCCCCCCC-CCCH-------HHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHH
Q psy7930 18 SVASALAAV----RGGADRLELCAALSEGGL-TPTL-------GLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMA 85 (146)
Q Consensus 18 s~~~a~~A~----~~GAdRIELc~~l~~GGl-TPS~-------g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~ 85 (146)
|+++...|. ..|-..+-||-. |+- +|++ ..+...++..++| |++-|.++.+ ..| ...
T Consensus 146 s~~e~~~A~e~i~~~Gn~~i~L~~r---G~~t~~~Y~~~~vdl~~i~~lk~~~~~p--V~~D~sHs~G----~~~--~v~ 214 (266)
T PRK13398 146 TLEEWLYAAEYIMSEGNENVVLCER---GIRTFETYTRNTLDLAAVAVIKELSHLP--IIVDPSHATG----RRE--LVI 214 (266)
T ss_pred CHHHHHHHHHHHHhcCCCeEEEEEC---CCCCCCCCCHHHHHHHHHHHHHhccCCC--EEEeCCCccc----chh--hHH
Confidence 555555554 458889999853 663 3333 3555556666788 5787733321 111 344
Q ss_pred HHHHHHHHcCCCEEEEee-ecC-----C--CCcCHHHHHHHHHHhC
Q psy7930 86 LDCHQFVESGADGFVIGA-LTG-----E--QEIDIEFIRQLKTIIG 123 (146)
Q Consensus 86 ~dI~~~~~~GadG~VfG~-L~~-----d--g~iD~~~~~~Li~~a~ 123 (146)
.....+..+||||+++=. .|+ | .++|.+.+++|++..+
T Consensus 215 ~~~~aAva~Ga~Gl~iE~H~~pd~a~~D~~~sl~p~~l~~l~~~i~ 260 (266)
T PRK13398 215 PMAKAAIAAGADGLMIEVHPEPEKALSDARQTLNFEEMKELVDELK 260 (266)
T ss_pred HHHHHHHHcCCCEEEEeccCCccccCCchhhcCCHHHHHHHHHHHH
Confidence 568888999999999873 232 3 3699999999998765
No 392
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=76.63 E-value=19 Score=31.44 Aligned_cols=76 Identities=16% Similarity=0.095 Sum_probs=48.2
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCC------CHHHHHHHHh---hCCCcEEEE--EccCCCCC----cccCHHHHHHH
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTP------TLGLYRVIKR---LVLVPVFVM--IRVRAGFD----FVFSQAEKEIM 84 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTP------S~g~i~~~~~---~~~ipv~vM--IRP~R~gd----F~Ys~~E~~~M 84 (146)
.++..|.+.|||=+-+--.+. .--| ....++.+.+ ..++|+.+| +.| ++++ ..|....-+.+
T Consensus 110 ~sve~a~~~GAdAVk~lv~~~--~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~-~~~~~~~~~~~a~~~p~~V 186 (340)
T PRK12858 110 WSVRRIKEAGADAVKLLLYYR--PDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYD-GKGSDKKAEEFAKVKPEKV 186 (340)
T ss_pred ccHHHHHHcCCCEEEEEEEeC--CCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccC-CCccccccccccccCHHHH
Confidence 346778999999887766544 2212 1223444333 348999998 567 6653 23433444577
Q ss_pred HHHHHHHHH--cCCCE
Q psy7930 85 ALDCHQFVE--SGADG 98 (146)
Q Consensus 85 ~~dI~~~~~--~GadG 98 (146)
..-++.+.+ +|+|=
T Consensus 187 ~~a~r~~~~~elGaDv 202 (340)
T PRK12858 187 IKTMEEFSKPRYGVDV 202 (340)
T ss_pred HHHHHHHhhhccCCeE
Confidence 788888885 99973
No 393
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=76.58 E-value=16 Score=30.57 Aligned_cols=75 Identities=16% Similarity=0.167 Sum_probs=44.2
Q ss_pred EEecCH--HHHHHHHHcCCCEEEecCCCCCCCCC----CC-HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930 14 VCVDSV--ASALAAVRGGADRLELCAALSEGGLT----PT-LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMAL 86 (146)
Q Consensus 14 vcv~s~--~~a~~A~~~GAdRIELc~~l~~GGlT----PS-~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~ 86 (146)
.|..+. +.+....+..-+-|=+.+.....|.+ +. ...++.+++..++||.|- |--+. .+
T Consensus 148 lvap~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vG--------fGI~~------~e 213 (258)
T PRK13111 148 LVAPTTTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVG--------FGIST------PE 213 (258)
T ss_pred EeCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEE--------cccCC------HH
Confidence 344444 44555555555666555555544543 22 347888888778888652 22321 14
Q ss_pred HHHHHHHcCCCEEEEee
Q psy7930 87 DCHQFVESGADGFVIGA 103 (146)
Q Consensus 87 dI~~~~~~GadG~VfG~ 103 (146)
|++.+.+. |||+|+|=
T Consensus 214 ~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 214 QAAAIAAV-ADGVIVGS 229 (258)
T ss_pred HHHHHHHh-CCEEEEcH
Confidence 56666665 99999993
No 394
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=76.42 E-value=6.3 Score=32.34 Aligned_cols=87 Identities=20% Similarity=0.187 Sum_probs=56.5
Q ss_pred HHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhCCC-cEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC-
Q psy7930 22 ALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLVLV-PVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD- 97 (146)
Q Consensus 22 a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~~i-pv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad- 97 (146)
+..+.+.|||+|-||+. .|-+||. ..+++.+++..+. |+.+.--- +-.+.. .-...+.++|++
T Consensus 147 ~~~~~~~G~d~i~l~DT--~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn---------~~GlA~--AN~laAi~aGa~~ 213 (263)
T cd07943 147 AKLMESYGADCVYVTDS--AGAMLPDDVRERVRALREALDPTPVGFHGHN---------NLGLAV--ANSLAAVEAGATR 213 (263)
T ss_pred HHHHHHcCCCEEEEcCC--CCCcCHHHHHHHHHHHHHhCCCceEEEEecC---------CcchHH--HHHHHHHHhCCCE
Confidence 45667789999999994 7999995 6788888887765 65544333 222222 223334467985
Q ss_pred --EEEEeeecCCCCcCHHHHHHHHHH
Q psy7930 98 --GFVIGALTGEQEIDIEFIRQLKTI 121 (146)
Q Consensus 98 --G~VfG~L~~dg~iD~~~~~~Li~~ 121 (146)
+=+.|.=..-|..+.+.+-..++.
T Consensus 214 vd~s~~GlG~~aGN~~~E~lv~~L~~ 239 (263)
T cd07943 214 IDGSLAGLGAGAGNTPLEVLVAVLER 239 (263)
T ss_pred EEeecccccCCcCCccHHHHHHHHHh
Confidence 445565555677888877666543
No 395
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=76.30 E-value=34 Score=28.70 Aligned_cols=98 Identities=23% Similarity=0.304 Sum_probs=55.9
Q ss_pred HHHHHHcCCCEEEecCCCCCCCCCC--CH----HHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHH--------HHH
Q psy7930 22 ALAAVRGGADRLELCAALSEGGLTP--TL----GLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEI--------MAL 86 (146)
Q Consensus 22 a~~A~~~GAdRIELc~~l~~GGlTP--S~----g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~--------M~~ 86 (146)
+..+.+.|+++|-|. ||..| .. .+++.+++.. ++.+..+ |..|+.. ..+
T Consensus 45 ~~~~~~~G~~~i~l~-----gg~~~~~~~~~~~~i~~~Ik~~~~~i~~~~~-----------s~~e~~~~~~~~g~~~~e 108 (309)
T TIGR00423 45 VKEAVAKGATEVCIQ-----GGLNPQLDIEYYEELFRAIKQEFPDVHIHAF-----------SPMEVYFLAKNEGLSIEE 108 (309)
T ss_pred HHHHHHCCCCEEEEe-----cCCCCCCCHHHHHHHHHHHHHHCCCceEEec-----------CHHHHHHHHHHcCCCHHH
Confidence 555667899999996 55555 33 3455555442 3344333 3334431 246
Q ss_pred HHHHHHHcCCCEEE-Eee--ecC-------CCCcCHHHHHHHHHHhC--CCCeEEeecccC
Q psy7930 87 DCHQFVESGADGFV-IGA--LTG-------EQEIDIEFIRQLKTIIG--DRPITFHRAFDV 135 (146)
Q Consensus 87 dI~~~~~~GadG~V-fG~--L~~-------dg~iD~~~~~~Li~~a~--~~~vtFHRAFD~ 135 (146)
.++.++++|++.+- .|+ +++ .+.+..+.-.+.++.|+ |++++.+.-|-.
T Consensus 109 ~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~iiG~ 169 (309)
T TIGR00423 109 VLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTATMMFGH 169 (309)
T ss_pred HHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEecC
Confidence 68888899998775 342 211 12345555455556555 677777766654
No 396
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=76.20 E-value=2.9 Score=35.22 Aligned_cols=76 Identities=24% Similarity=0.363 Sum_probs=0.0
Q ss_pred CHHHHHHHHHcCCCEEEecCCCCC-----------------CCCCC--CHHHHHHHH-hhCCCcEEEEEccCCCCCcccC
Q psy7930 18 SVASALAAVRGGADRLELCAALSE-----------------GGLTP--TLGLYRVIK-RLVLVPVFVMIRVRAGFDFVFS 77 (146)
Q Consensus 18 s~~~a~~A~~~GAdRIELc~~l~~-----------------GGlTP--S~g~i~~~~-~~~~ipv~vMIRP~R~gdF~Ys 77 (146)
+.+-+....++|||-|||-=-.+- .|+|. -+.+++.++ +..++|+.+|--= .-=|.|.
T Consensus 26 ~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~--N~i~~~G 103 (259)
T PF00290_consen 26 TLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYY--NPIFQYG 103 (259)
T ss_dssp HHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-H--HHHHHH-
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeec--cHHhccc
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEE
Q psy7930 78 QAEKEIMALDCHQFVESGADGFVI 101 (146)
Q Consensus 78 ~~E~~~M~~dI~~~~~~GadG~Vf 101 (146)
-+.| ++.++++|+||+++
T Consensus 104 ~e~F------~~~~~~aGvdGlIi 121 (259)
T PF00290_consen 104 IERF------FKEAKEAGVDGLII 121 (259)
T ss_dssp HHHH------HHHHHHHTEEEEEE
T ss_pred hHHH------HHHHHHcCCCEEEE
No 397
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=76.11 E-value=18 Score=29.69 Aligned_cols=86 Identities=19% Similarity=0.254 Sum_probs=54.8
Q ss_pred HHHHHHHHcCCCEEEec--CCCCCCCCCCCHHHHHHHHhh-CCCc--EEEEEc-c--------CCCCCcccCHHH-HHHH
Q psy7930 20 ASALAAVRGGADRLELC--AALSEGGLTPTLGLYRVIKRL-VLVP--VFVMIR-V--------RAGFDFVFSQAE-KEIM 84 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc--~~l~~GGlTPS~g~i~~~~~~-~~ip--v~vMIR-P--------~R~gdF~Ys~~E-~~~M 84 (146)
+++....++|+|.+-+= ++--+--+|=+..+++.+++. .++| ||.|+. | ..|.|...=..| -...
T Consensus 20 ~~i~~l~~~g~d~lHiDimDG~FVPN~tfg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~~H~Ea~~~~ 99 (223)
T PRK08745 20 EEVDNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGATTISFHPEASRHV 99 (223)
T ss_pred HHHHHHHHcCCCEEEEecccCccCCCcccCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccH
Confidence 56777788899998763 222333345567789999987 4655 899995 3 124444443344 2345
Q ss_pred HHHHHHHHHcCCC-EEEEeeec
Q psy7930 85 ALDCHQFVESGAD-GFVIGALT 105 (146)
Q Consensus 85 ~~dI~~~~~~Gad-G~VfG~L~ 105 (146)
.+-|+.+|++|+. |+++..-|
T Consensus 100 ~~~l~~Ir~~g~k~GlalnP~T 121 (223)
T PRK08745 100 HRTIQLIKSHGCQAGLVLNPAT 121 (223)
T ss_pred HHHHHHHHHCCCceeEEeCCCC
Confidence 6778888999975 66654433
No 398
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=76.07 E-value=24 Score=31.63 Aligned_cols=84 Identities=27% Similarity=0.298 Sum_probs=52.4
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhCC--CcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLVL--VPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG 95 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~~--ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G 95 (146)
+-+.+|..+||+||=||+. .|++||. ...++.+++.+. +|+-+. + +++-- .-..-...+.+.|
T Consensus 150 ~~~~~~~~~ga~~i~l~DT--vG~~~P~~~~~~i~~l~~~v~~~~~l~~H--~-------HnD~G--~AvANslaAv~aG 216 (409)
T COG0119 150 EVVKAAIEAGADRINLPDT--VGVATPNEVADIIEALKANVPNKVILSVH--C-------HNDLG--MAVANSLAAVEAG 216 (409)
T ss_pred HHHHHHHHcCCcEEEECCC--cCccCHHHHHHHHHHHHHhCCCCCeEEEE--e-------cCCcc--hHHHHHHHHHHcC
Confidence 4566778889999999994 8999995 678888888764 555432 2 22222 2335556667788
Q ss_pred CC---EEEEeeecCCCCcCHHHHH
Q psy7930 96 AD---GFVIGALTGEQEIDIEFIR 116 (146)
Q Consensus 96 ad---G~VfG~L~~dg~iD~~~~~ 116 (146)
|+ |=|+|.=-.-|.-+.+.+.
T Consensus 217 a~~v~~TvnGiGERaGna~l~~v~ 240 (409)
T COG0119 217 ADQVEGTVNGIGERAGNAALEEVV 240 (409)
T ss_pred CcEEEEecccceeccccccHHHHH
Confidence 85 4455543334434443333
No 399
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=75.88 E-value=43 Score=30.21 Aligned_cols=88 Identities=24% Similarity=0.195 Sum_probs=57.0
Q ss_pred CHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCC
Q psy7930 18 SVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGA 96 (146)
Q Consensus 18 s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Ga 96 (146)
+++.+....++|++-|=+-++ .|-..--...++.+++.. ++||.+ ..+-|. ++.+.+.++|+
T Consensus 229 ~~e~a~~L~~agvdvivvD~a--~g~~~~vl~~i~~i~~~~p~~~vi~--------g~v~t~-------e~a~~l~~aGa 291 (486)
T PRK05567 229 NEERAEALVEAGVDVLVVDTA--HGHSEGVLDRVREIKAKYPDVQIIA--------GNVATA-------EAARALIEAGA 291 (486)
T ss_pred hHHHHHHHHHhCCCEEEEECC--CCcchhHHHHHHHHHhhCCCCCEEE--------eccCCH-------HHHHHHHHcCC
Confidence 467888888899997744332 233333455667776665 667654 245554 45666778999
Q ss_pred CEEEEeeecCC-----------CCcCHHHHHHHHHHhC
Q psy7930 97 DGFVIGALTGE-----------QEIDIEFIRQLKTIIG 123 (146)
Q Consensus 97 dG~VfG~L~~d-----------g~iD~~~~~~Li~~a~ 123 (146)
|+|.+|. ++. |.-+..++.++.++++
T Consensus 292 d~i~vg~-g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~ 328 (486)
T PRK05567 292 DAVKVGI-GPGSICTTRIVAGVGVPQITAIADAAEAAK 328 (486)
T ss_pred CEEEECC-CCCccccceeecCCCcCHHHHHHHHHHHhc
Confidence 9999986 543 2345667777777765
No 400
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=75.82 E-value=51 Score=28.36 Aligned_cols=115 Identities=23% Similarity=0.323 Sum_probs=76.0
Q ss_pred ccceeEEEecCH----HHHHHHHHcCCCEEEecCCC-----CCC----CC--CCC--HHHHHHHHhhCC-CcEEEEEccC
Q psy7930 8 NKTTLEVCVDSV----ASALAAVRGGADRLELCAAL-----SEG----GL--TPT--LGLYRVIKRLVL-VPVFVMIRVR 69 (146)
Q Consensus 8 ~~~~lEvcv~s~----~~a~~A~~~GAdRIELc~~l-----~~G----Gl--TPS--~g~i~~~~~~~~-ipv~vMIRP~ 69 (146)
..+.+-++-.++ +.|..+++.|+|-|+||.+= .-+ +| +|. ...++++++.++ +||.|=||-
T Consensus 67 ~p~~vQl~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRl- 145 (323)
T COG0042 67 RPVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRL- 145 (323)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEec-
Confidence 335778888888 44556677899999998742 111 22 232 345666667774 999999997
Q ss_pred CCCCccc-CHHHHHHHHHHHHHHHHcCCCEEEEeeecC----CCCcCHHHHHHHHHHhCCCCeEEe
Q psy7930 70 AGFDFVF-SQAEKEIMALDCHQFVESGADGFVIGALTG----EQEIDIEFIRQLKTIIGDRPITFH 130 (146)
Q Consensus 70 R~gdF~Y-s~~E~~~M~~dI~~~~~~GadG~VfG~L~~----dg~iD~~~~~~Li~~a~~~~vtFH 130 (146)
|-|-.. ...|+ .+.+.+.|++-+.+=+=|. .|..|.+.++++.+..++.|+.-.
T Consensus 146 -G~d~~~~~~~~i------a~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~N 204 (323)
T COG0042 146 -GWDDDDILALEI------ARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIAN 204 (323)
T ss_pred -ccCcccccHHHH------HHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeC
Confidence 332221 12222 3455668899998866554 356899999999999987766543
No 401
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=75.43 E-value=32 Score=28.91 Aligned_cols=96 Identities=19% Similarity=0.097 Sum_probs=61.1
Q ss_pred eeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCH-HH----HHHHHhhCC-CcEEEEEccCCCCCcccCHHHHHHH
Q psy7930 11 TLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTL-GL----YRVIKRLVL-VPVFVMIRVRAGFDFVFSQAEKEIM 84 (146)
Q Consensus 11 ~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~-g~----i~~~~~~~~-ipv~vMIRP~R~gdF~Ys~~E~~~M 84 (146)
+|=|-.++.+-...|...|||-|=|+- +.|..|.- .. +........ -+..++||+ ++.+.-| .
T Consensus 6 ~LfvP~~~~~~~~ka~~~gaD~vilDL---EDav~~~~k~~AR~~v~~~l~~~~~~~~~~~VRI-n~~~~~~-------~ 74 (288)
T TIGR01588 6 MMFVPGNNPAMISDAFIYGADSVMFDL---EDAVSLAEKDSARLLVYEALQTPDYGDTETVVRI-NGLDTPF-------G 74 (288)
T ss_pred eeecCCCCHHHHHhhhhcCCCEEEEec---ccCCCcchHHHHHHHHHHHHhccCCCCCEEEEEE-CCCCChh-------H
Confidence 344556677888889999999999994 56777643 22 333333332 345678888 6654333 4
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHH
Q psy7930 85 ALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLK 119 (146)
Q Consensus 85 ~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li 119 (146)
..||..+...|++||++==.+. .=|...+..++
T Consensus 75 ~~di~~~l~~g~~givlPKv~s--~~~v~~~~~~l 107 (288)
T TIGR01588 75 LADIKAVVKAGVDVVRLPKTDT--AEDIHELEKLI 107 (288)
T ss_pred HHHHHHHHhcCCCEEEeCCCCC--HHHHHHHHHHH
Confidence 4678888899999998865443 23444444443
No 402
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=75.35 E-value=31 Score=25.68 Aligned_cols=101 Identities=23% Similarity=0.278 Sum_probs=57.6
Q ss_pred HHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEcc------CCCCCcccCH------HHHHHH-
Q psy7930 19 VASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRV------RAGFDFVFSQ------AEKEIM- 84 (146)
Q Consensus 19 ~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP------~R~gdF~Ys~------~E~~~M- 84 (146)
.+.+..+.++|++.|+|-.. .+...|...+++.+++.. ...+++|+.- +.|.|+++.+ .++...
T Consensus 15 ~~~l~~l~~~g~~~i~lr~~--~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~a~~~g~~~vh~~~~~~~~~~~~~~~ 92 (196)
T cd00564 15 LEVVEAALKGGVTLVQLREK--DLSARELLELARALRELCRKYGVPLIINDRVDLALAVGADGVHLGQDDLPVAEARALL 92 (196)
T ss_pred HHHHHHHHhcCCCEEEEeCC--CCCHHHHHHHHHHHHHHHHHhCCeEEEeChHHHHHHcCCCEEecCcccCCHHHHHHHc
Confidence 35577788899999988642 112223445566665543 2345566633 1233444322 222222
Q ss_pred ------------HHHHHHHHHcCCCEEEEeeecCC-------CCcCHHHHHHHHHH
Q psy7930 85 ------------ALDCHQFVESGADGFVIGALTGE-------QEIDIEFIRQLKTI 121 (146)
Q Consensus 85 ------------~~dI~~~~~~GadG~VfG~L~~d-------g~iD~~~~~~Li~~ 121 (146)
..++..+.+.|+|.+.||.+.+. ...+.+.++++.+.
T Consensus 93 ~~~~~~g~~~~t~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (196)
T cd00564 93 GPDLIIGVSTHSLEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL 148 (196)
T ss_pred CCCCEEEeeCCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh
Confidence 24777888889999999876432 34566677666554
No 403
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=75.26 E-value=2.8 Score=35.71 Aligned_cols=106 Identities=13% Similarity=0.105 Sum_probs=67.4
Q ss_pred HHHcCCCEEEecCCCCCCC-------CCCC-HHHHHHHHhh---CCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHH
Q psy7930 25 AVRGGADRLELCAALSEGG-------LTPT-LGLYRVIKRL---VLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVE 93 (146)
Q Consensus 25 A~~~GAdRIELc~~l~~GG-------lTPS-~g~i~~~~~~---~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~ 93 (146)
|.+.|-.-+-+-..-...+ +||. -.-|+++.++ -+|.|.+-..-+-+++... -|-+ |.+-...+++
T Consensus 41 Aa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~--~~~~-~~~~f~~~~~ 117 (273)
T PF10566_consen 41 AAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVAN--LEKQ-LDEAFKLYAK 117 (273)
T ss_dssp HHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHH--HHCC-HHHHHHHHHH
T ss_pred HHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHh--HHHH-HHHHHHHHHH
Confidence 8888999998865443211 1221 2234444433 3677777666522455544 3333 5788899999
Q ss_pred cCCCEEEEeeecCCCCcCHHHHHHHHHHhC--CCCeEEeecc
Q psy7930 94 SGADGFVIGALTGEQEIDIEFIRQLKTIIG--DRPITFHRAF 133 (146)
Q Consensus 94 ~GadG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~vtFHRAF 133 (146)
.|+.||=+|+.+.|++--+....++++.|- .+=|-||=++
T Consensus 118 ~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~~LmvnfHg~~ 159 (273)
T PF10566_consen 118 WGVKGVKIDFMDRDDQEMVNWYEDILEDAAEYKLMVNFHGAT 159 (273)
T ss_dssp CTEEEEEEE--SSTSHHHHHHHHHHHHHHHHTT-EEEETTS-
T ss_pred cCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHcCcEEEecCCc
Confidence 999999999999999988888899988774 7889999764
No 404
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=75.26 E-value=16 Score=29.59 Aligned_cols=70 Identities=24% Similarity=0.392 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCCCEEEecCCCCCCCC-C-CCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCC
Q psy7930 19 VASALAAVRGGADRLELCAALSEGGL-T-PTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGA 96 (146)
Q Consensus 19 ~~~a~~A~~~GAdRIELc~~l~~GGl-T-PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Ga 96 (146)
.+-+....+.|+.++ |+.++.-.|+ + |...+++.+++..++|+.+ -|| -. | .+|++.+++.|+
T Consensus 150 ~~~~~~~~~~g~~~i-i~tdi~~dGt~~G~d~~~~~~l~~~~~~~via-----sGG-v~-~-------~~Dl~~l~~~G~ 214 (229)
T PF00977_consen 150 EEFAKRLEELGAGEI-ILTDIDRDGTMQGPDLELLKQLAEAVNIPVIA-----SGG-VR-S-------LEDLRELKKAGI 214 (229)
T ss_dssp HHHHHHHHHTT-SEE-EEEETTTTTTSSS--HHHHHHHHHHHSSEEEE-----ESS----S-------HHHHHHHHHTTE
T ss_pred HHHHHHHHhcCCcEE-EEeeccccCCcCCCCHHHHHHHHHHcCCCEEE-----ecC-CC-C-------HHHHHHHHHCCC
Confidence 345667889999999 5555544433 3 8999999999888999865 255 21 1 367888889999
Q ss_pred CEEEEee
Q psy7930 97 DGFVIGA 103 (146)
Q Consensus 97 dG~VfG~ 103 (146)
+|+++|=
T Consensus 215 ~gvivg~ 221 (229)
T PF00977_consen 215 DGVIVGS 221 (229)
T ss_dssp CEEEESH
T ss_pred cEEEEeh
Confidence 9999984
No 405
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=74.62 E-value=8 Score=32.24 Aligned_cols=86 Identities=16% Similarity=0.075 Sum_probs=56.3
Q ss_pred HHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC--
Q psy7930 22 ALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD-- 97 (146)
Q Consensus 22 a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad-- 97 (146)
+..+.+.|++||-||+. .|.+||. ..+++.+++..++|+.+..-- .-| +. ..-...+.++|++
T Consensus 147 ~~~~~~~g~~~i~l~Dt--~G~~~P~~v~~~~~~~~~~~~~~i~~H~Hn-~~G--------la--~an~~~a~~aG~~~v 213 (262)
T cd07948 147 YRAVDKLGVNRVGIADT--VGIATPRQVYELVRTLRGVVSCDIEFHGHN-DTG--------CA--IANAYAALEAGATHI 213 (262)
T ss_pred HHHHHHcCCCEEEECCc--CCCCCHHHHHHHHHHHHHhcCCeEEEEECC-CCC--------hH--HHHHHHHHHhCCCEE
Confidence 34677889999999994 7899994 678888888878887666554 222 11 2334445578885
Q ss_pred -EEEEeeecCCCCcCHHHHHHHHH
Q psy7930 98 -GFVIGALTGEQEIDIEFIRQLKT 120 (146)
Q Consensus 98 -G~VfG~L~~dg~iD~~~~~~Li~ 120 (146)
+=+.|.=..-|..+.+.+-..+.
T Consensus 214 d~s~~GlGeraGn~~~e~~~~~l~ 237 (262)
T cd07948 214 DTTVLGIGERNGITPLGGLIARMY 237 (262)
T ss_pred EEeccccccccCCccHHHHHHHHH
Confidence 44555544456666665555443
No 406
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=74.49 E-value=14 Score=31.48 Aligned_cols=101 Identities=15% Similarity=0.173 Sum_probs=64.1
Q ss_pred EEecCHHHHHH----HHHcCCCEEEecCC--CCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHH
Q psy7930 14 VCVDSVASALA----AVRGGADRLELCAA--LSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALD 87 (146)
Q Consensus 14 vcv~s~~~a~~----A~~~GAdRIELc~~--l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~d 87 (146)
+-+.|++.+.+ |++.++.=|=-.+. +...|+..-..+++...+..++||.+.+=- +.+| ++
T Consensus 23 fNv~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHLDH--~~~~-----------e~ 89 (284)
T PRK12857 23 FNCNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALHLDH--GTDF-----------EQ 89 (284)
T ss_pred EEeCCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEEECCC--CCCH-----------HH
Confidence 34556666544 45556655544432 122333333344555666778999887765 5554 35
Q ss_pred HHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCe
Q psy7930 88 CHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPI 127 (146)
Q Consensus 88 I~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~v 127 (146)
|..+.++|.+.|-|=.=.-+.+=+.+.++++++.|++..+
T Consensus 90 i~~ai~~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv 129 (284)
T PRK12857 90 VMKCIRNGFTSVMIDGSKLPLEENIALTKKVVEIAHAVGV 129 (284)
T ss_pred HHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 7888889999998865555556678899999999975443
No 407
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=74.28 E-value=25 Score=30.11 Aligned_cols=103 Identities=8% Similarity=0.035 Sum_probs=67.8
Q ss_pred eEEEecCHHHHHH----HHHcCCCEEEecCC--CCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHH
Q psy7930 12 LEVCVDSVASALA----AVRGGADRLELCAA--LSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMA 85 (146)
Q Consensus 12 lEvcv~s~~~a~~----A~~~GAdRIELc~~--l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~ 85 (146)
.=+.+.|++.+++ |++.++.=|=-.+. +...|+..-..+++...+..++||.+.+=- +.+ .
T Consensus 21 ~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDH--g~~-----------~ 87 (286)
T PRK12738 21 PAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDH--HES-----------L 87 (286)
T ss_pred EEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCC--CCC-----------H
Confidence 3355677777654 55567766655442 222333334456666667779999887765 554 3
Q ss_pred HHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCe
Q psy7930 86 LDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPI 127 (146)
Q Consensus 86 ~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~v 127 (146)
+.|..+.++|.+.|-|=.=.-+.+=+...++++++.|+.+.+
T Consensus 88 e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv 129 (286)
T PRK12738 88 DDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDC 129 (286)
T ss_pred HHHHHHHHcCCCeEeecCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 567778888999998865555556678889999999985433
No 408
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=74.25 E-value=24 Score=29.45 Aligned_cols=96 Identities=26% Similarity=0.339 Sum_probs=63.1
Q ss_pred cCHHHHHHHHHcCCCEEEecCCCCCCC-----CCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHH
Q psy7930 17 DSVASALAAVRGGADRLELCAALSEGG-----LTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQF 91 (146)
Q Consensus 17 ~s~~~a~~A~~~GAdRIELc~~l~~GG-----lTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~ 91 (146)
||.-.+..|.+.|-+=.=|..-....+ -||...+.+..-+..++|+ +-.+. ++ =-+.|++.+.+- +
T Consensus 12 DS~~Al~~a~~~G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l-~~~~~-~g----~~e~eve~L~~~---l 82 (223)
T COG2102 12 DSFYALYLALEEGHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPL-VTFDT-SG----EEEREVEELKEA---L 82 (223)
T ss_pred HHHHHHHHHHHcCCeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCce-EEEec-Cc----cchhhHHHHHHH---H
Confidence 456667778888877777766444444 5788888888888889994 33444 33 113466655544 4
Q ss_pred HHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930 92 VESGADGFVIGALTGEQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 92 ~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~ 123 (146)
+.+++||+|.|++-.+- -+.++++|.+..+
T Consensus 83 ~~l~~d~iv~GaI~s~y--qk~rve~lc~~lG 112 (223)
T COG2102 83 RRLKVDGIVAGAIASEY--QKERVERLCEELG 112 (223)
T ss_pred HhCcccEEEEchhhhHH--HHHHHHHHHHHhC
Confidence 45569999999987653 3455666665554
No 409
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=74.17 E-value=52 Score=27.63 Aligned_cols=110 Identities=17% Similarity=0.109 Sum_probs=64.5
Q ss_pred cceeEEEecCHHHHHHHHHcCCCEEEecC-CC-------CCCCCCCCHHHHHH---HHhhCCCc-EEEEEccCCCCCccc
Q psy7930 9 KTTLEVCVDSVASALAAVRGGADRLELCA-AL-------SEGGLTPTLGLYRV---IKRLVLVP-VFVMIRVRAGFDFVF 76 (146)
Q Consensus 9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~-~l-------~~GGlTPS~g~i~~---~~~~~~ip-v~vMIRP~R~gdF~Y 76 (146)
.++.=..+.+..+|+.++++|.|=| |.. ++ .-+|..+--.++.. +.+.++.| |.+=+ | .|+|.=
T Consensus 12 ~~l~~~~ayD~~sA~l~e~aG~d~i-~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~-~--fg~y~~ 87 (254)
T cd06557 12 EKIVMLTAYDYPTAKLADEAGVDVI-LVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADM-P--FGSYQT 87 (254)
T ss_pred CcEEEEeCCCHHHHHHHHHcCCCEE-EECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeC-C--CCcccC
Confidence 4566688899999999999999999 554 22 22222222233333 34455778 43312 6 455554
Q ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEEe
Q psy7930 77 SQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFH 130 (146)
Q Consensus 77 s~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtFH 130 (146)
|.+ +...+-.+.+++.|++|+-+ +||.--.+.++.+++ .+.||.-|
T Consensus 88 ~~~--~av~~a~r~~~~aGa~aVki----Ed~~~~~~~I~al~~--agipV~gH 133 (254)
T cd06557 88 SPE--QALRNAARLMKEAGADAVKL----EGGAEVAETIRALVD--AGIPVMGH 133 (254)
T ss_pred CHH--HHHHHHHHHHHHhCCeEEEE----cCcHHHHHHHHHHHH--cCCCeecc
Confidence 444 44567788888999999876 344322333333332 25565544
No 410
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=74.15 E-value=49 Score=30.20 Aligned_cols=89 Identities=19% Similarity=0.205 Sum_probs=57.0
Q ss_pred HHHHHcCCCEEEecCCCCCCCCC---------CC-HHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHH
Q psy7930 23 LAAVRGGADRLELCAALSEGGLT---------PT-LGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQF 91 (146)
Q Consensus 23 ~~A~~~GAdRIELc~~l~~GGlT---------PS-~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~ 91 (146)
....+.|.+.||.= ||-| |. ...++.+++.. ++++..+.|.... .-|....=++++..++.+
T Consensus 32 ~~Ld~~Gv~~IE~~-----ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~--~G~~~~~dDvv~~fv~~A 104 (467)
T PRK14041 32 EAFDRMGFYSMEVW-----GGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNL--VGYRHYADDVVELFVKKV 104 (467)
T ss_pred HHHHHcCCCEEEec-----CCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccc--cCcccccchhhHHHHHHH
Confidence 34556799999993 6654 21 45677776663 6889888886122 223333344566678888
Q ss_pred HHcCCCEEEEee-ecCCCCcCHHHHHHHHHHhC
Q psy7930 92 VESGADGFVIGA-LTGEQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 92 ~~~GadG~VfG~-L~~dg~iD~~~~~~Li~~a~ 123 (146)
.+.|+|-|-+-. ++ |.+.+.+.++.|+
T Consensus 105 ~~~Gvd~irif~~ln-----d~~n~~~~i~~ak 132 (467)
T PRK14041 105 AEYGLDIIRIFDALN-----DIRNLEKSIEVAK 132 (467)
T ss_pred HHCCcCEEEEEEeCC-----HHHHHHHHHHHHH
Confidence 888888654442 33 3667777777776
No 411
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=73.63 E-value=8.2 Score=32.73 Aligned_cols=71 Identities=24% Similarity=0.317 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCCCEEEecCCCCCCCC--CCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCC
Q psy7930 19 VASALAAVRGGADRLELCAALSEGGL--TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGA 96 (146)
Q Consensus 19 ~~~a~~A~~~GAdRIELc~~l~~GGl--TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Ga 96 (146)
.+=+...++.|++-|-+=..-..-+. ++.+..++.+++.++|||.. -|+=| |.++.+.+. +..|+
T Consensus 141 ~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~-----NGdI~--s~~d~~~~~------~~tg~ 207 (309)
T PF01207_consen 141 IEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIA-----NGDIF--SPEDAERML------EQTGA 207 (309)
T ss_dssp HHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEE-----ESS----SHHHHHHHC------CCH-S
T ss_pred HHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEE-----cCccC--CHHHHHHHH------HhcCC
Confidence 45677788899998887653222211 78899999999999988754 35533 444444332 23499
Q ss_pred CEEEEe
Q psy7930 97 DGFVIG 102 (146)
Q Consensus 97 dG~VfG 102 (146)
|||.+|
T Consensus 208 dgvMig 213 (309)
T PF01207_consen 208 DGVMIG 213 (309)
T ss_dssp SEEEES
T ss_pred cEEEEc
Confidence 999998
No 412
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=73.60 E-value=29 Score=29.30 Aligned_cols=103 Identities=23% Similarity=0.190 Sum_probs=70.3
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhC-CCcEEEEEccCC---CCC-cccCHH-----HHHHHHHH
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLV-LVPVFVMIRVRA---GFD-FVFSQA-----EKEIMALD 87 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~-~ipv~vMIRP~R---~gd-F~Ys~~-----E~~~M~~d 87 (146)
+++....+.||+|+=|.+.+-. .|. .++++++.+.. +=.|.+-|=- | .|+ .+|+.. ++....+=
T Consensus 88 e~v~~~l~aGa~rVvIGS~av~---~~~i~~~~~~~i~~~fG~~~IvvsiD~-k~~~~g~~~V~~~GW~~~t~~~~~~e~ 163 (253)
T TIGR02129 88 TNAQEWLDEGASHVIVTSWLFT---KGKFDLKRLKEIVSLVGKDRLIVDLSC-RKTQDGRWIVAMNKWQTITDLELNAET 163 (253)
T ss_pred HHHHHHHHcCCCEEEECcHHHh---CCCCCHHHHHHHHHHhCCCCEEEEEEE-EEcCCCcEEEEECCCcccCCCChHHHH
Confidence 9999999999999999774322 233 67888888876 3345555544 3 332 444332 22221144
Q ss_pred HHHHHHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeE
Q psy7930 88 CHQFVESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPIT 128 (146)
Q Consensus 88 I~~~~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vt 128 (146)
++.+.+. +..|++=-.+.||+ +|.+.++++.+.. +.|++
T Consensus 164 ~~~~~~~-~~~il~TdI~rDGtl~G~dlel~~~l~~~~-~ipVI 205 (253)
T TIGR02129 164 LEELSKY-CDEFLIHAADVEGLCKGIDEELVSKLGEWS-PIPIT 205 (253)
T ss_pred HHHHHhh-CCEEEEeeecccCccccCCHHHHHHHHhhC-CCCEE
Confidence 5666777 99999999999996 7999999998874 45554
No 413
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=73.57 E-value=20 Score=29.16 Aligned_cols=69 Identities=16% Similarity=0.185 Sum_probs=51.2
Q ss_pred ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930 16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES 94 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~ 94 (146)
+.++.++..|.+.||+-+-|-=+=..|| ...++.++.-+ ++|+ | | .||= | .+++..+.++
T Consensus 108 ~~TptEi~~A~~~Ga~~vKlFPA~~~GG----~~yikal~~plp~i~~--~--p-tGGV---~-------~~N~~~~l~a 168 (204)
T TIGR01182 108 VATPSEIMLALELGITALKLFPAEVSGG----VKMLKALAGPFPQVRF--C--P-TGGI---N-------LANVRDYLAA 168 (204)
T ss_pred CCCHHHHHHHHHCCCCEEEECCchhcCC----HHHHHHHhccCCCCcE--E--e-cCCC---C-------HHHHHHHHhC
Confidence 4689999999999999999875323333 56777777654 3443 4 8 8882 1 1688999999
Q ss_pred CCCEEEEee
Q psy7930 95 GADGFVIGA 103 (146)
Q Consensus 95 GadG~VfG~ 103 (146)
|+.++++|=
T Consensus 169 Ga~~vg~Gs 177 (204)
T TIGR01182 169 PNVACGGGS 177 (204)
T ss_pred CCEEEEECh
Confidence 999999983
No 414
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=73.07 E-value=5.4 Score=36.66 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=28.7
Q ss_pred HHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhC
Q psy7930 22 ALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLV 58 (146)
Q Consensus 22 a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~ 58 (146)
+..|.+.||+||-||+. .|.+||. ..+++.+++.+
T Consensus 245 ~~~a~~~Gad~I~l~DT--vG~~tP~~v~~lV~~l~~~~ 281 (503)
T PLN03228 245 LGEAIKAGATSVGIADT--VGINMPHEFGELVTYVKANT 281 (503)
T ss_pred HHHHHhcCCCEEEEecC--CCCCCHHHHHHHHHHHHHHh
Confidence 45788899999999994 8999994 66788887765
No 415
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=72.95 E-value=57 Score=27.58 Aligned_cols=107 Identities=24% Similarity=0.305 Sum_probs=72.8
Q ss_pred cCHHHHHHHHHcCCCEEEecC---C-C-CCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930 17 DSVASALAAVRGGADRLELCA---A-L-SEGGLTPTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMALDCH 89 (146)
Q Consensus 17 ~s~~~a~~A~~~GAdRIELc~---~-l-~~GGlTPS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~ 89 (146)
+..++.-.|...||+-|-.+. . . .+|=++|..+.+-..++.+ ++.|..=|++ ..+. .-++..++. .++
T Consensus 90 d~~aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~-kh~~-~l~~~~~~e---~a~ 164 (257)
T TIGR00259 90 DAVAALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILADIVV-KHAV-HLGNRDLES---IAL 164 (257)
T ss_pred CCHHHHHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcCCCcEEEeceee-cccC-cCCCCCHHH---HHH
Confidence 566788889999999887743 2 2 3455567777776667664 5777777899 5554 333444443 344
Q ss_pred HHHHcC-CCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeE
Q psy7930 90 QFVESG-ADGFVIGALTGEQEIDIEFIRQLKTIIGDRPIT 128 (146)
Q Consensus 90 ~~~~~G-adG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vt 128 (146)
.....| +||+++.=.......|.+.++++.+...+.|+-
T Consensus 165 ~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~~~~~~Pvl 204 (257)
T TIGR00259 165 DTVERGLADAVILSGKTTGTEVDLELLKLAKETVKDTPVL 204 (257)
T ss_pred HHHHhcCCCEEEECcCCCCCCCCHHHHHHHHhccCCCeEE
Confidence 444445 999988766666689999999888766666653
No 416
>PRK12999 pyruvate carboxylase; Reviewed
Probab=72.76 E-value=6.5 Score=39.51 Aligned_cols=67 Identities=21% Similarity=0.210 Sum_probs=49.3
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCC--CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTP--TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD 97 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTP--S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad 97 (146)
+-+..+++.|||+|=|++. .|-+|| .+.+++.+++.+++||++.--- ..| +.. .-...+.++|||
T Consensus 695 ~~a~~l~~~Ga~~i~ikDt--~G~l~P~~~~~lv~~lk~~~~ipi~~H~Hn-t~G--------la~--an~laA~~aGad 761 (1146)
T PRK12999 695 DLAKELEKAGAHILAIKDM--AGLLKPAAAYELVSALKEEVDLPIHLHTHD-TSG--------NGL--ATYLAAAEAGVD 761 (1146)
T ss_pred HHHHHHHHcCCCEEEECCc--cCCCCHHHHHHHHHHHHHHcCCeEEEEeCC-CCc--------hHH--HHHHHHHHhCCC
Confidence 4477889999999999994 799999 4779999999889999887665 444 111 234455677776
Q ss_pred EE
Q psy7930 98 GF 99 (146)
Q Consensus 98 G~ 99 (146)
.|
T Consensus 762 ~v 763 (1146)
T PRK12999 762 IV 763 (1146)
T ss_pred EE
Confidence 43
No 417
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=72.70 E-value=12 Score=34.21 Aligned_cols=69 Identities=26% Similarity=0.103 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930 19 VASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG 98 (146)
Q Consensus 19 ~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG 98 (146)
.+-+.+..++|+|-||+= .+.|--.=-...++.+++..+.++.|+ +| =+.|. ++.+.+.++|||+
T Consensus 244 ~~ra~~Lv~aGvd~i~vd--~a~g~~~~~~~~i~~ir~~~~~~~~V~-----aG-nV~t~-------e~a~~li~aGAd~ 308 (502)
T PRK07107 244 AERVPALVEAGADVLCID--SSEGYSEWQKRTLDWIREKYGDSVKVG-----AG-NVVDR-------EGFRYLAEAGADF 308 (502)
T ss_pred HHHHHHHHHhCCCeEeec--CcccccHHHHHHHHHHHHhCCCCceEE-----ec-cccCH-------HHHHHHHHcCCCE
Confidence 466777888999999974 223322222567777777664333222 22 23333 5667777899999
Q ss_pred EEEe
Q psy7930 99 FVIG 102 (146)
Q Consensus 99 ~VfG 102 (146)
+.+|
T Consensus 309 I~vg 312 (502)
T PRK07107 309 VKVG 312 (502)
T ss_pred EEEC
Confidence 9995
No 418
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=72.64 E-value=44 Score=28.79 Aligned_cols=104 Identities=18% Similarity=0.249 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCCEEEecCCC-----------------CCCCC-----CCCHHHHHHHHhhCCCcEEEEEccCCCCCcc-
Q psy7930 19 VASALAAVRGGADRLELCAAL-----------------SEGGL-----TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFV- 75 (146)
Q Consensus 19 ~~~a~~A~~~GAdRIELc~~l-----------------~~GGl-----TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~- 75 (146)
.+.|..|+++|.|-|||..+- .-||- --...+++.+++.++.. .|.+|= +..++.
T Consensus 155 ~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d-~v~vRi-s~~~~~~ 232 (338)
T cd02933 155 RQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGAD-RVGIRL-SPFGTFN 232 (338)
T ss_pred HHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCC-ceEEEE-CccccCC
Confidence 367888999999999997431 11331 11235778888877542 266666 544432
Q ss_pred -----cCHHHHHHHHHHHHHHHHcCCCEEEE--eeecCC-CCcCHHHHHHHHHHhCCCCeE
Q psy7930 76 -----FSQAEKEIMALDCHQFVESGADGFVI--GALTGE-QEIDIEFIRQLKTIIGDRPIT 128 (146)
Q Consensus 76 -----Ys~~E~~~M~~dI~~~~~~GadG~Vf--G~L~~d-g~iD~~~~~~Li~~a~~~~vt 128 (146)
++.+ .+.+=++.+.+.|+|-+-+ |...++ ...+.+..+++.+.. +.||.
T Consensus 233 ~~~~~~~~e---e~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~-~ipvi 289 (338)
T cd02933 233 DMGDSDPEA---TFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAF-KGPLI 289 (338)
T ss_pred CCCCCCCHH---HHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHc-CCCEE
Confidence 3434 4445566777789998877 432221 234555555555543 34443
No 419
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=72.59 E-value=32 Score=29.91 Aligned_cols=67 Identities=22% Similarity=0.233 Sum_probs=40.8
Q ss_pred HHHHHHHcCCCEEEecCCCCCCCCCCC---HH----HHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHH
Q psy7930 21 SALAAVRGGADRLELCAALSEGGLTPT---LG----LYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVE 93 (146)
Q Consensus 21 ~a~~A~~~GAdRIELc~~l~~GGlTPS---~g----~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~ 93 (146)
.+..+.+.|++++-|. ||-+|+ .. .++.+++. .| .+-|.+ | .-+.++ ++.+++
T Consensus 112 ~a~~~~~~Gv~~i~lv-----gGe~p~~~~~e~l~~~i~~Ik~~--~p-~i~i~~---g--~lt~e~-------l~~Lk~ 171 (371)
T PRK09240 112 EMAAIKKLGFEHILLL-----TGEHEAKVGVDYIRRALPIAREY--FS-SVSIEV---Q--PLSEEE-------YAELVE 171 (371)
T ss_pred HHHHHHhCCCCEEEEe-----eCCCCCCCCHHHHHHHHHHHHHh--CC-Cceecc---C--CCCHHH-------HHHHHH
Confidence 4456677899999886 566665 23 33333332 22 122233 1 124333 488999
Q ss_pred cCCCEEEEeeecCC
Q psy7930 94 SGADGFVIGALTGE 107 (146)
Q Consensus 94 ~GadG~VfG~L~~d 107 (146)
+|++++-++.=|.+
T Consensus 172 aGv~r~~i~lET~~ 185 (371)
T PRK09240 172 LGLDGVTVYQETYN 185 (371)
T ss_pred cCCCEEEEEEecCC
Confidence 99999999987754
No 420
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=72.50 E-value=16 Score=31.24 Aligned_cols=100 Identities=10% Similarity=0.082 Sum_probs=64.9
Q ss_pred EEecCHHHHHH----HHHcCCCEEEecCCCC--CCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHH
Q psy7930 14 VCVDSVASALA----AVRGGADRLELCAALS--EGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALD 87 (146)
Q Consensus 14 vcv~s~~~a~~----A~~~GAdRIELc~~l~--~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~d 87 (146)
+-+.|++.+.+ |++.++-=|=-++.-. ..|+..-..+++.+.+..++||.+.+=- +.+| ++
T Consensus 21 fN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDH--g~~~-----------e~ 87 (282)
T TIGR01858 21 FNIHNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLALHLDH--HESL-----------DD 87 (282)
T ss_pred EEeCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCC--CCCH-----------HH
Confidence 44556666654 5555776665554211 1222223345555666778999887765 6654 56
Q ss_pred HHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCC
Q psy7930 88 CHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRP 126 (146)
Q Consensus 88 I~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~ 126 (146)
|..+.++|.+.|-|=.=.-+.+=+.+.++++++.|+...
T Consensus 88 i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~g 126 (282)
T TIGR01858 88 IRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQD 126 (282)
T ss_pred HHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 888999999999886555455567888999999998433
No 421
>PRK07823 5'-methylthioadenosine phosphorylase; Validated
Probab=72.32 E-value=3.3 Score=34.96 Aligned_cols=67 Identities=21% Similarity=0.180 Sum_probs=47.8
Q ss_pred CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEE----eeecCC---CCcCHHHHHHHHHHhCCCCeEEe
Q psy7930 59 LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVI----GALTGE---QEIDIEFIRQLKTIIGDRPITFH 130 (146)
Q Consensus 59 ~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~Vf----G~L~~d---g~iD~~~~~~Li~~a~~~~vtFH 130 (146)
+.||.+|-|- |-.-.|....+. .+.-|..+|++|++-++. |.|+++ |.|=. ...++...++-+.||+
T Consensus 47 g~~v~~l~Rh--Gr~H~ye~~~i~-~rani~alk~lGv~~ii~tnA~Gsln~~~~pGdlvi--~dd~id~t~~~p~t~~ 120 (264)
T PRK07823 47 GRRVAFLPRH--GRDHEFSPHTVP-YRANMWALRALGVRRVFAPCAVGSLRPELGPGTVVV--PDQLVDRTSGRAQTYF 120 (264)
T ss_pred CEEEEEEeCC--CCCCCcCCCCcc-chHHHHHHHHcCCCEEEEecccccCCCCCCCCCEEE--cchhhhccCCCCCCcc
Confidence 6788888665 444456777777 888999999999999885 888887 43322 4556666666667775
No 422
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=72.24 E-value=58 Score=27.36 Aligned_cols=99 Identities=14% Similarity=0.072 Sum_probs=52.8
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhCCCcEEEE----EccCCCCCcccCHHHHHHHHHHHHHHHH
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLVLVPVFVM----IRVRAGFDFVFSQAEKEIMALDCHQFVE 93 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~~ipv~vM----IRP~R~gdF~Ys~~E~~~M~~dI~~~~~ 93 (146)
....+|.++| ..+=.--+-.-...+++ ...++.+.+... |+.+. +-| ..++ +. ++++.+.+
T Consensus 21 ~~~~aa~~gG-Ttvv~mpnt~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~-~~~~---~~-------~el~~~~~ 87 (335)
T cd01294 21 LVLPYTARGF-SRAIVMPNLKPPVTTTADALAYRERILAADP-GPNFTPLMTLYL-TENT---TP-------EELREAKK 87 (335)
T ss_pred HHHHHHHhCC-CEEEECCCCCCCCCCHHHHHHHHHHHHhcCC-CCcEEEEEEEec-cCCC---CH-------HHHHHHHH
Confidence 4567888899 88877655433444433 112222222221 33322 223 2221 12 34444555
Q ss_pred c-CCCEEEEee----ecCCCC-cCHHHHHHHHHHhC--CCCeEEee
Q psy7930 94 S-GADGFVIGA----LTGEQE-IDIEFIRQLKTIIG--DRPITFHR 131 (146)
Q Consensus 94 ~-GadG~VfG~----L~~dg~-iD~~~~~~Li~~a~--~~~vtFHR 131 (146)
. |+.||-+=- ...+.. .|.+.+.++.+.+. ++++.||-
T Consensus 88 ~~G~~g~Klf~~~~~~~~~~~~~d~~~l~~~~e~~~~~g~~V~vHa 133 (335)
T cd01294 88 KGGIRGVKLYPAGATTNSQGGVTDLEKIYPVLEAMQKLGMPLLVHG 133 (335)
T ss_pred hCCceEEEEecCCCccCCCCCcCCHHHHHHHHHHHHHcCCeEEEec
Confidence 4 999986420 112222 35678888888886 78899995
No 423
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=72.15 E-value=19 Score=29.55 Aligned_cols=90 Identities=26% Similarity=0.319 Sum_probs=58.2
Q ss_pred ceeEEEecCHHHHHHHHHcC-CCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHH
Q psy7930 10 TTLEVCVDSVASALAAVRGG-ADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALD 87 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~~G-AdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~d 87 (146)
.++|+-+++++++..|.+.| +|.|=|-+ .....+.|....++.....- ..|-++.|=- .|+.. . +.
T Consensus 185 ~~idve~~~~~~~~~~~~~~~~d~irlDs-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--Sggi~--~-------~~ 252 (281)
T cd00516 185 ALIDVEVDTLEEALEAAKAGGADGIRLDS-GSPEELDPAVLILKARAHLDGKGLPRVKIEA--SGGLD--E-------EN 252 (281)
T ss_pred EEEEEEeCCHHHHHHHHhcCCCCEEEeCC-CChHHHHHHHHHHHHHHhhhhcCCCceEEEE--eCCCC--H-------HH
Confidence 57899999999999999999 99887654 34444455555444322110 1223334444 34343 2 45
Q ss_pred HHHHHHcCCCEEEEeeecCCC-CcC
Q psy7930 88 CHQFVESGADGFVIGALTGEQ-EID 111 (146)
Q Consensus 88 I~~~~~~GadG~VfG~L~~dg-~iD 111 (146)
|+.+.+.|+|.|++|.++-+. .+|
T Consensus 253 i~~~~~~gvd~~gvG~~~~~~~~~d 277 (281)
T cd00516 253 IRAYAETGVDVFGVGTLLHSAPPLD 277 (281)
T ss_pred HHHHHHcCCCEEEeCcccccCcccC
Confidence 666788999999999998765 444
No 424
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=71.99 E-value=23 Score=29.37 Aligned_cols=88 Identities=10% Similarity=-0.006 Sum_probs=63.4
Q ss_pred EecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHH
Q psy7930 15 CVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVE 93 (146)
Q Consensus 15 cv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~ 93 (146)
...|+.-+..+...|-|-+-+-. +.|.+ +...+..+.... ...+.+|+|+ ...| ...|+.+.+
T Consensus 19 ~~~sp~~~e~~a~~G~D~v~iD~--EHg~~--~~~~~~~~~~a~~~~g~~~~VRv-p~~~-----------~~~i~r~LD 82 (249)
T TIGR03239 19 ALGNPITTEVLGLAGFDWLLLDG--EHAPN--DVLTFIPQLMALKGSASAPVVRP-PWNE-----------PVIIKRLLD 82 (249)
T ss_pred cCCCcHHHHHHHhcCCCEEEEec--ccCCC--CHHHHHHHHHHHhhcCCCcEEEC-CCCC-----------HHHHHHHhc
Confidence 46677888888899999998874 34444 444454444433 4567779998 6664 245777889
Q ss_pred cCCCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930 94 SGADGFVIGALTGEQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 94 ~GadG~VfG~L~~dg~iD~~~~~~Li~~a~ 123 (146)
.|++||++=..+ +.+..++++++++
T Consensus 83 ~Ga~gIivP~v~-----taeea~~~v~a~k 107 (249)
T TIGR03239 83 IGFYNFLIPFVE-----SAEEAERAVAATR 107 (249)
T ss_pred CCCCEEEecCcC-----CHHHHHHHHHHcC
Confidence 999999987665 4678889999987
No 425
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=71.93 E-value=45 Score=28.67 Aligned_cols=69 Identities=28% Similarity=0.341 Sum_probs=50.0
Q ss_pred cCCCEEEecCCCCCCCCCCCHHHHHHHHhh--CCCcEEEEEc--cC---CCCCccc---CHHHHHHHHHHHHHHHHcCCC
Q psy7930 28 GGADRLELCAALSEGGLTPTLGLYRVIKRL--VLVPVFVMIR--VR---AGFDFVF---SQAEKEIMALDCHQFVESGAD 97 (146)
Q Consensus 28 ~GAdRIELc~~l~~GGlTPS~g~i~~~~~~--~~ipv~vMIR--P~---R~gdF~Y---s~~E~~~M~~dI~~~~~~Gad 97 (146)
.|||-+-|= || ..+.+.++.. .+|||.-.|= |. +-|+|-- ++++-+++.+|.+.+.++||-
T Consensus 106 ~gA~aVKlE-----GG----~~~~~~i~~L~~~gIPV~gHiGLtPQ~v~~~GGykvqGr~~~~a~~l~~dA~ale~AGaf 176 (268)
T COG0413 106 AGADAVKLE-----GG----EEMAETIKRLTERGIPVMGHIGLTPQSVNWLGGYKVQGRTEESAEKLLEDAKALEEAGAF 176 (268)
T ss_pred hCCCEEEEc-----CC----HHHHHHHHHHHHcCCceEEEecCChhhhhccCCeeeecCCHHHHHHHHHHHHHHHhcCce
Confidence 889988774 55 3444444433 3899988773 51 2355654 679999999999999999999
Q ss_pred EEEEeeec
Q psy7930 98 GFVIGALT 105 (146)
Q Consensus 98 G~VfG~L~ 105 (146)
.+|+=+.-
T Consensus 177 ~ivlE~Vp 184 (268)
T COG0413 177 ALVLECVP 184 (268)
T ss_pred EEEEeccH
Confidence 99987654
No 426
>PF01630 Glyco_hydro_56: Hyaluronidase; InterPro: IPR018155 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 56 GH56 from CAZY comprises enzymes with only one known activity; hyaluronidase 3.2.1.35 from EC. The venom of Apis mellifera (Honeybee) contains several biologically-active peptides and two enzymes, one of which is a hyaluronidase []. The amino acid sequence of bee venom hyaluronidase contains 349 amino acids, and includes four cysteines and a number of potential glycosylation sites []. The sequence shows a high degree of similarity to PH-20, a membrane protein of mammalian sperm involved in sperm-egg adhesion, supporting the view that hyaluronidases play a role in fertilisation []. PH-20 is required for sperm adhesion to the egg zona pellucida; it is located on both the sperm plasma membrane and acrosomal membrane []. The amino acid sequence of the mature protein contains 468 amino acids, and includes six potential N-linked glycosylation sites and twelve cysteines, eight of which are tightly clustered near the C terminus [].; GO: 0004415 hyalurononglucosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 1FCQ_A 1FCV_A 1FCU_A 2J88_A 2PE4_A 2ATM_A.
Probab=71.84 E-value=3.8 Score=35.99 Aligned_cols=56 Identities=27% Similarity=0.326 Sum_probs=33.9
Q ss_pred CcEEEEEccCCCC---CcccCHHHHHHHHHHHHHHHHcCCCEEEE-eeecCCCCcCHHHHHHHHHH
Q psy7930 60 VPVFVMIRVRAGF---DFVFSQAEKEIMALDCHQFVESGADGFVI-GALTGEQEIDIEFIRQLKTI 121 (146)
Q Consensus 60 ipv~vMIRP~R~g---dF~Ys~~E~~~M~~dI~~~~~~GadG~Vf-G~L~~dg~iD~~~~~~Li~~ 121 (146)
+||++-+|+ ... +--+|.+++ ...|....++||+|||+ |-.+ ..=..+.|..|-+-
T Consensus 261 ~pV~~Y~r~-~~~~~~~~fLs~~DL---~~TigesaalGa~GvViWG~s~--~~~s~~~C~~l~~Y 320 (337)
T PF01630_consen 261 LPVFPYTRY-VYYDSTDEFLSQEDL---VNTIGESAALGAAGVVIWGSSN--DVNSKESCQKLRNY 320 (337)
T ss_dssp -EEEEEEES-EETTEEEEE--HHHH---HHHHHHHHHTT-SEEEEE--GG--GSSSHHHHHHHHHH
T ss_pred cceeeeeec-ccccCccccchhhHH---HHHHHHHHHcCCCeEEEeeccc--cccChHHHHHHHHH
Confidence 899999995 332 233566554 46788889999999998 4332 22356777777553
No 427
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=71.72 E-value=64 Score=27.67 Aligned_cols=73 Identities=19% Similarity=0.185 Sum_probs=47.3
Q ss_pred CCCCCCCCCH-------HHHHHHHhhCCC----cEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeecCC
Q psy7930 39 LSEGGLTPTL-------GLYRVIKRLVLV----PVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGE 107 (146)
Q Consensus 39 l~~GGlTPS~-------g~i~~~~~~~~i----pv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~d 107 (146)
+..||=|||. .+++.+++..++ .+.+-.|| . .+ ++ +.++.++++|++.+-+|+-+-+
T Consensus 55 i~~gGGtpt~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p-~--~l--~~-------e~l~~l~~~G~~rvsiGvqS~~ 122 (377)
T PRK08599 55 IYIGGGTPTALSAEQLERLLTAIHRNLPLSGLEEFTFEANP-G--DL--TK-------EKLQVLKDSGVNRISLGVQTFN 122 (377)
T ss_pred EEeCCCCcccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCC-C--CC--CH-------HHHHHHHHcCCCEEEEecccCC
Confidence 5678889983 345555554433 57777788 2 22 32 4567788899999999998765
Q ss_pred C--------CcCHHHHHHHHHHhC
Q psy7930 108 Q--------EIDIEFIRQLKTIIG 123 (146)
Q Consensus 108 g--------~iD~~~~~~Li~~a~ 123 (146)
- .-+.+...+.++.++
T Consensus 123 ~~~l~~l~r~~~~~~~~~~i~~l~ 146 (377)
T PRK08599 123 DELLKKIGRTHNEEDVYEAIANAK 146 (377)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHH
Confidence 2 345555666666665
No 428
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=71.63 E-value=61 Score=27.38 Aligned_cols=100 Identities=26% Similarity=0.393 Sum_probs=64.2
Q ss_pred CHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhh------CCCcEEEEEccCCCC--C------ccc-CHHHHH
Q psy7930 18 SVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRL------VLVPVFVMIRVRAGF--D------FVF-SQAEKE 82 (146)
Q Consensus 18 s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~------~~ipv~vMIRP~R~g--d------F~Y-s~~E~~ 82 (146)
+++.+..|.++|.+-|=+=.. --|--..++.+++. .+++|..-|-- -|| | -.| +.+|.
T Consensus 86 ~~e~i~~ai~~Gf~sVmid~s-----~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~-~gg~ed~~~g~~~~~t~~eea- 158 (282)
T TIGR01859 86 SYESCIKAIKAGFSSVMIDGS-----HLPFEENLALTKKVVEIAHAKGVSVEAELGT-LGGIEDGVDEKEAELADPDEA- 158 (282)
T ss_pred CHHHHHHHHHcCCCEEEECCC-----CCCHHHHHHHHHHHHHHHHHcCCEEEEeeCC-CcCccccccccccccCCHHHH-
Confidence 789999999999888766532 11434455555442 36777766654 333 1 223 33333
Q ss_pred HHHHHHHHHH-HcCCCEEE--Eee----ecCCCCcCHHHHHHHHHHhCCCCeEEee
Q psy7930 83 IMALDCHQFV-ESGADGFV--IGA----LTGEQEIDIEFIRQLKTIIGDRPITFHR 131 (146)
Q Consensus 83 ~M~~dI~~~~-~~GadG~V--fG~----L~~dg~iD~~~~~~Li~~a~~~~vtFHR 131 (146)
..+. +.|+|-+. ||- -+....+|.++++++.+.. +.|++.|=
T Consensus 159 ------~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~-~iPlv~hG 207 (282)
T TIGR01859 159 ------EQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELT-NIPLVLHG 207 (282)
T ss_pred ------HHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHh-CCCEEEEC
Confidence 3444 37999888 443 3344679999999998876 59999996
No 429
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=71.40 E-value=18 Score=30.88 Aligned_cols=99 Identities=13% Similarity=0.097 Sum_probs=62.7
Q ss_pred EecCHHHHHH----HHHcCCCEEEecCCC--CCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930 15 CVDSVASALA----AVRGGADRLELCAAL--SEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDC 88 (146)
Q Consensus 15 cv~s~~~a~~----A~~~GAdRIELc~~l--~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI 88 (146)
-+.|++.+.+ |++.++.=|=-.+.- ..-|+..-...++.+.+..++||.+.+=- +.|| ++|
T Consensus 24 N~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VPValHLDH--~~~~-----------e~i 90 (284)
T PRK12737 24 NIHNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNIPLALHLDH--HEDL-----------DDI 90 (284)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCC--CCCH-----------HHH
Confidence 3455565544 555566655444321 11232222344555566678998877755 5554 578
Q ss_pred HHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCC
Q psy7930 89 HQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRP 126 (146)
Q Consensus 89 ~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~ 126 (146)
..+.++|.+.|-|=.=+-+.+=+...++++++.|+...
T Consensus 91 ~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~g 128 (284)
T PRK12737 91 KKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYD 128 (284)
T ss_pred HHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 88899999999886555555567888999999998543
No 430
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=71.37 E-value=25 Score=28.68 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=14.0
Q ss_pred HHHHHHHHcCCCEEEEe
Q psy7930 86 LDCHQFVESGADGFVIG 102 (146)
Q Consensus 86 ~dI~~~~~~GadG~VfG 102 (146)
++++.+.++ |||+|+|
T Consensus 200 e~~~~~~~~-ADgvVvG 215 (242)
T cd04724 200 EQAAEVAKY-ADGVIVG 215 (242)
T ss_pred HHHHHHHcc-CCEEEEC
Confidence 478888899 9999999
No 431
>PRK10200 putative racemase; Provisional
Probab=71.10 E-value=25 Score=28.54 Aligned_cols=40 Identities=25% Similarity=0.350 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEE
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMI 66 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMI 66 (146)
+++..-++.||+-|=++.| |+++- +..+++.+++|+.=|+
T Consensus 66 ~~~~~L~~~g~~~iviaCN------Tah~~-~~~l~~~~~iPii~ii 105 (230)
T PRK10200 66 EAALGLQRAGAEGIVLCTN------TMHKV-ADAIESRCSLPFLHIA 105 (230)
T ss_pred HHHHHHHHcCCCEEEECCc------hHHHH-HHHHHHhCCCCEeehH
Confidence 4455556788888888876 77665 5777777778877666
No 432
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=70.83 E-value=30 Score=28.12 Aligned_cols=83 Identities=20% Similarity=0.318 Sum_probs=52.4
Q ss_pred HHHHHHHHcCCCEEEec--CCCCCCCCCCCHHHHHHHHhh-CCCc--EEEEEc-c--------CCCCCcccCHHH-HHHH
Q psy7930 20 ASALAAVRGGADRLELC--AALSEGGLTPTLGLYRVIKRL-VLVP--VFVMIR-V--------RAGFDFVFSQAE-KEIM 84 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc--~~l~~GGlTPS~g~i~~~~~~-~~ip--v~vMIR-P--------~R~gdF~Ys~~E-~~~M 84 (146)
+++....++|+|.+-+= ++--+--+|=+..+++.+++. .++| ||.|+. | ..|-|...=..| -...
T Consensus 16 ~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~H~Ea~~~~ 95 (220)
T PRK08883 16 EDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHVEASEHV 95 (220)
T ss_pred HHHHHHHHcCCCEEEEecccCcccCccccCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccH
Confidence 45667778899998763 222333345567789999987 4554 899995 4 123444443344 3446
Q ss_pred HHHHHHHHHcCCC-EEEEe
Q psy7930 85 ALDCHQFVESGAD-GFVIG 102 (146)
Q Consensus 85 ~~dI~~~~~~Gad-G~VfG 102 (146)
.+-+..+|++|+. |+++.
T Consensus 96 ~~~l~~ik~~g~k~Glaln 114 (220)
T PRK08883 96 DRTLQLIKEHGCQAGVVLN 114 (220)
T ss_pred HHHHHHHHHcCCcEEEEeC
Confidence 6778888999975 44443
No 433
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=70.80 E-value=20 Score=30.51 Aligned_cols=100 Identities=12% Similarity=0.129 Sum_probs=63.7
Q ss_pred EEecCHHHHHH----HHHcCCCEEEecCC--CCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHH
Q psy7930 14 VCVDSVASALA----AVRGGADRLELCAA--LSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALD 87 (146)
Q Consensus 14 vcv~s~~~a~~----A~~~GAdRIELc~~--l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~d 87 (146)
+.+.|++.+.+ |++.++.=|=-.+. +...|+..-...++.+.+..++||.+.+=- +.|| ++
T Consensus 18 fN~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHLDH--~~~~-----------~~ 84 (276)
T cd00947 18 FNINNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERASVPVALHLDH--GSSF-----------EL 84 (276)
T ss_pred EeeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCC--CCCH-----------HH
Confidence 45566766654 45556655544332 111222222334455555678999888765 5543 66
Q ss_pred HHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCC
Q psy7930 88 CHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRP 126 (146)
Q Consensus 88 I~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~ 126 (146)
|..+.++|.+.|-|=.=.-+.+=+...++++++.|+...
T Consensus 85 i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~g 123 (276)
T cd00947 85 IKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYG 123 (276)
T ss_pred HHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 777889999999987655556678889999999998543
No 434
>PRK10200 putative racemase; Provisional
Probab=70.75 E-value=10 Score=30.88 Aligned_cols=68 Identities=21% Similarity=0.253 Sum_probs=47.9
Q ss_pred CCCCCC--CHHHHHHHHhhC-------CCcEEEEEccCCCCC---ccc---CHHHHHHHHHHHHHHHHcCCCEEEEeeec
Q psy7930 41 EGGLTP--TLGLYRVIKRLV-------LVPVFVMIRVRAGFD---FVF---SQAEKEIMALDCHQFVESGADGFVIGALT 105 (146)
Q Consensus 41 ~GGlTP--S~g~i~~~~~~~-------~ipv~vMIRP~R~gd---F~Y---s~~E~~~M~~dI~~~~~~GadG~VfG~L~ 105 (146)
.||+.| +..+++.+.+.+ ..|..++--| .-.| +.. .+.-...|.++++.+.+.|+|-+|+.|-|
T Consensus 7 lGGmGp~aT~~~~~~i~~~t~a~~d~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g~~~iviaCNT 85 (230)
T PRK10200 7 LGGMSWESTIPYYRLINEGIKQRLGGLHSAQLLLHSV-DFHEIEECQRRGEWDKTGDILAEAALGLQRAGAEGIVLCTNT 85 (230)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCC-ChHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCEEEECCch
Confidence 499999 455666665433 3666666655 2222 112 14567899999999999999999999999
Q ss_pred CCCC
Q psy7930 106 GEQE 109 (146)
Q Consensus 106 ~dg~ 109 (146)
..-.
T Consensus 86 ah~~ 89 (230)
T PRK10200 86 MHKV 89 (230)
T ss_pred HHHH
Confidence 8754
No 435
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=70.52 E-value=16 Score=31.20 Aligned_cols=68 Identities=22% Similarity=0.268 Sum_probs=45.0
Q ss_pred HHHHHHHcCCCEEEecCCCC-------------CCCCCCC------HHHHHHHHhhC--CCcEEEEEccCCCCCcccCHH
Q psy7930 21 SALAAVRGGADRLELCAALS-------------EGGLTPT------LGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQA 79 (146)
Q Consensus 21 ~a~~A~~~GAdRIELc~~l~-------------~GGlTPS------~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~ 79 (146)
=+.+++++|||-|.+..... .||++.. ...++.+++.+ ++||.. -|| ++|.+
T Consensus 221 ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~-----~GG--I~t~~ 293 (327)
T cd04738 221 IADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIG-----VGG--ISSGE 293 (327)
T ss_pred HHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEE-----ECC--CCCHH
Confidence 34567889999999876321 4566532 57788888877 688754 266 33443
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEe
Q psy7930 80 EKEIMALDCHQFVESGADGFVIG 102 (146)
Q Consensus 80 E~~~M~~dI~~~~~~GadG~VfG 102 (146)
|+..+...|||.|-+|
T Consensus 294 -------da~e~l~aGAd~V~vg 309 (327)
T cd04738 294 -------DAYEKIRAGASLVQLY 309 (327)
T ss_pred -------HHHHHHHcCCCHHhcc
Confidence 3444445799988877
No 436
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=70.21 E-value=29 Score=30.43 Aligned_cols=67 Identities=18% Similarity=0.269 Sum_probs=42.2
Q ss_pred CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEe---eec-CCCCcCHHHHHHHHHHh
Q psy7930 47 TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIG---ALT-GEQEIDIEFIRQLKTII 122 (146)
Q Consensus 47 S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG---~L~-~dg~iD~~~~~~Li~~a 122 (146)
+...++.+++..++||.|=. +-+ .+|.+.+.++|+|||++. --. ..+....+.+.++.++.
T Consensus 209 ~~~~l~~lr~~~~~PvivKg--------v~~-------~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~ 273 (351)
T cd04737 209 SPADIEFIAKISGLPVIVKG--------IQS-------PEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAV 273 (351)
T ss_pred CHHHHHHHHHHhCCcEEEec--------CCC-------HHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHh
Confidence 55677788887888876651 111 168889999999999993 111 12333456677776655
Q ss_pred C-CCCeE
Q psy7930 123 G-DRPIT 128 (146)
Q Consensus 123 ~-~~~vt 128 (146)
+ .+++.
T Consensus 274 ~~~i~vi 280 (351)
T cd04737 274 NHRVPII 280 (351)
T ss_pred CCCCeEE
Confidence 4 35544
No 437
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=70.18 E-value=24 Score=31.83 Aligned_cols=103 Identities=23% Similarity=0.189 Sum_probs=67.2
Q ss_pred CHHHHHHHHHcC-CCEEEecCCCCCCCCCC---CHHHHHHHHh---hC--------CCcEEEEEccCCCCCcccCHHHHH
Q psy7930 18 SVASALAAVRGG-ADRLELCAALSEGGLTP---TLGLYRVIKR---LV--------LVPVFVMIRVRAGFDFVFSQAEKE 82 (146)
Q Consensus 18 s~~~a~~A~~~G-AdRIELc~~l~~GGlTP---S~g~i~~~~~---~~--------~ipv~vMIRP~R~gdF~Ys~~E~~ 82 (146)
|.++|..|++.| ||=|=.- .+.||-|. +..++..+.+ .+ +|||.. -|| .. |.
T Consensus 165 t~~eA~~A~~~g~aD~Ivvq--~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViA-----AGG-I~-tg---- 231 (418)
T cd04742 165 TEEQAELARRVPVADDITVE--ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGA-----AGG-IG-TP---- 231 (418)
T ss_pred CHHHHHHHHhCCCCCEEEEc--ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEE-----ECC-CC-CH----
Confidence 789999999999 5876554 57777654 5566665554 22 355422 244 32 33
Q ss_pred HHHHHHHHHHHcCCCEEEEeeec---CCCCcCHHHHHHHHHHhCCCCeEEeecccCCC
Q psy7930 83 IMALDCHQFVESGADGFVIGALT---GEQEIDIEFIRQLKTIIGDRPITFHRAFDVVR 137 (146)
Q Consensus 83 ~M~~dI~~~~~~GadG~VfG~L~---~dg~iD~~~~~~Li~~a~~~~vtFHRAFD~~~ 137 (146)
+++..+..+|||||+.|=.. .+-... +..|+++..++.-..+.=-|+|...
T Consensus 232 ---~~vaAA~alGAd~V~~GT~flat~Ea~~s-~~~K~~L~~a~~~DT~~tp~~dmfe 285 (418)
T cd04742 232 ---EAAAAAFALGADFIVTGSINQCTVEAGTS-DAVKDLLQKAGVQDTAYAPAADMFE 285 (418)
T ss_pred ---HHHHHHHHcCCcEEeeccHHHhCccccCC-HHHHHHHHhCCCCCeEEeccccccc
Confidence 56778889999999999542 222222 3557777777777777777777743
No 438
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=70.16 E-value=40 Score=26.45 Aligned_cols=73 Identities=22% Similarity=0.139 Sum_probs=43.6
Q ss_pred HHHHHcCCCEEEecCCCCCCCCCCCH-HHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEE
Q psy7930 23 LAAVRGGADRLELCAALSEGGLTPTL-GLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVI 101 (146)
Q Consensus 23 ~~A~~~GAdRIELc~~l~~GGlTPS~-g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~Vf 101 (146)
..+.+.|||.+-+-.. .|. .+. .+++.++ ..++++.+.+-|...+...+-..+ ...=..+..+.|.+|++|
T Consensus 74 ~~~~~~gad~vtvh~e--~g~--~~l~~~i~~~~-~~g~~~~v~~~~~~~~~~~~~~~~---~~~v~~m~~e~G~~g~~~ 145 (215)
T PRK13813 74 EAVFEAGAWGIIVHGF--TGR--DSLKAVVEAAA-ESGGKVFVVVEMSHPGALEFIQPH---ADKLAKLAQEAGAFGVVA 145 (215)
T ss_pred HHHHhCCCCEEEEcCc--CCH--HHHHHHHHHHH-hcCCeEEEEEeCCCCCCCCCHHHH---HHHHHHHHHHhCCCeEEE
Confidence 5678899999887763 231 222 2334333 357899888877222222222222 333356778899999998
Q ss_pred ee
Q psy7930 102 GA 103 (146)
Q Consensus 102 G~ 103 (146)
+.
T Consensus 146 ~~ 147 (215)
T PRK13813 146 PA 147 (215)
T ss_pred CC
Confidence 75
No 439
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=70.14 E-value=22 Score=27.35 Aligned_cols=103 Identities=24% Similarity=0.321 Sum_probs=55.1
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCCCHHH---HHHHHhhC-CCcEEEEEcc------CCCCCcccCHH------HHHH
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTPTLGL---YRVIKRLV-LVPVFVMIRV------RAGFDFVFSQA------EKEI 83 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~---i~~~~~~~-~ipv~vMIRP------~R~gdF~Ys~~------E~~~ 83 (146)
+.+..+.++|++-|+|-.. +++ .... ++.+++.. +..+++|+.- +-|-||+..+. ++..
T Consensus 25 ~~~~~~~~~gv~~v~lr~~----~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~gad~vh~~~~~~~~~~~~~ 99 (212)
T PRK00043 25 EVVEAALEGGVTLVQLREK----GLD-TRERLELARALKELCRRYGVPLIVNDRVDLALAVGADGVHLGQDDLPVADARA 99 (212)
T ss_pred HHHHHHHhcCCCEEEEeCC----CCC-HHHHHHHHHHHHHHHHHhCCeEEEeChHHHHHHcCCCEEecCcccCCHHHHHH
Confidence 4567888999999988632 222 2333 33333221 2234456521 02445443321 1111
Q ss_pred HH-------------HHHHHHHHcCCCEEEEeeecCCC-------CcCHHHHHHHHHHhCCCCe
Q psy7930 84 MA-------------LDCHQFVESGADGFVIGALTGEQ-------EIDIEFIRQLKTIIGDRPI 127 (146)
Q Consensus 84 M~-------------~dI~~~~~~GadG~VfG~L~~dg-------~iD~~~~~~Li~~a~~~~v 127 (146)
.+ .++..+.+.|+|-+.||.+.+.+ ....+.++++.+..++.++
T Consensus 100 ~~~~~~~~g~~~~t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v 163 (212)
T PRK00043 100 LLGPDAIIGLSTHTLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPI 163 (212)
T ss_pred HcCCCCEEEEeCCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCE
Confidence 11 36667777888988888766543 2336777777766543443
No 440
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=69.87 E-value=29 Score=32.40 Aligned_cols=91 Identities=16% Similarity=0.123 Sum_probs=55.9
Q ss_pred HHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCC-cEEEEEccCC-CCCcccCHHHHHHHHHHHHHHHHcCCCEEEE
Q psy7930 24 AAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLV-PVFVMIRVRA-GFDFVFSQAEKEIMALDCHQFVESGADGFVI 101 (146)
Q Consensus 24 ~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~i-pv~vMIRP~R-~gdF~Ys~~E~~~M~~dI~~~~~~GadG~Vf 101 (146)
.|.+.+ .+|-++..+.+.|+|-+ .++....+..+. .+...|-- | ..+|-.|..-++.+. +.|++=++
T Consensus 64 ~ai~~~-e~I~I~gDyD~DGitst-ail~~~L~~~g~~~~~~~IP~-R~~eGYGl~~~~i~~~~-------~~~~~LiI- 132 (575)
T PRK11070 64 NALREG-TRIIVVGDFDADGATST-ALSVLALRSLGCSNVDYLVPN-RFEDGYGLSPEVVDQAH-------ARGAQLIV- 132 (575)
T ss_pred HHHHCC-CEEEEEEecCccHHHHH-HHHHHHHHHcCCCceEEEeCC-CCcCCCCCCHHHHHHHH-------hcCCCEEE-
Confidence 355555 79999999999999977 555555667788 47777755 6 455777776666543 33554222
Q ss_pred eeecCCCCcCHHHHHHHHHHhCCCCeEE
Q psy7930 102 GALTGEQEIDIEFIRQLKTIIGDRPITF 129 (146)
Q Consensus 102 G~L~~dg~iD~~~~~~Li~~a~~~~vtF 129 (146)
.-+.|.=+.+.++.+.+ .|+.+..
T Consensus 133 --tvD~Gi~~~e~i~~a~~--~gidvIV 156 (575)
T PRK11070 133 --TVDNGISSHAGVAHAHA--LGIPVLV 156 (575)
T ss_pred --EEcCCcCCHHHHHHHHH--CCCCEEE
Confidence 22345555555544443 2444433
No 441
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=69.83 E-value=15 Score=26.74 Aligned_cols=61 Identities=11% Similarity=0.316 Sum_probs=44.7
Q ss_pred CcEEEEEccCCCCCcccCHHHH--HHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCC
Q psy7930 60 VPVFVMIRVRAGFDFVFSQAEK--EIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGD 124 (146)
Q Consensus 60 ipv~vMIRP~R~gdF~Ys~~E~--~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~ 124 (146)
-|+.+.|.+ .|.+.+++.++ +.+...++..++..-+.-|+ +..|..+....+.++++.++.
T Consensus 48 ~~~~i~I~~--~g~~~~~~~~v~~~~L~~~l~~~~~~~~~~~v~--I~aD~~~~~~~vv~v~d~~~~ 110 (122)
T TIGR02803 48 KPVYVSVKA--DLSLFVGNDPVARETLGTALDALTEGDKDTTIF--FRADKTVDYGDLMKVMNLLRQ 110 (122)
T ss_pred CCEEEEEeC--CCCEEECCccCCHHHHHHHHHHHHhcCCCceEE--EEcCCCCCHHHHHHHHHHHHH
Confidence 478888887 66677765553 55666666666544555555 889999999999999999974
No 442
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=69.78 E-value=74 Score=27.60 Aligned_cols=106 Identities=25% Similarity=0.224 Sum_probs=75.0
Q ss_pred ceeEEEecCHHHHHHHHHcCCCEEEecC-------CCCCCCCCCCHHHHHHHHh---hCCCcEEEEEccCCCCCcccCHH
Q psy7930 10 TTLEVCVDSVASALAAVRGGADRLELCA-------ALSEGGLTPTLGLYRVIKR---LVLVPVFVMIRVRAGFDFVFSQA 79 (146)
Q Consensus 10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~-------~l~~GGlTPS~g~i~~~~~---~~~ipv~vMIRP~R~gdF~Ys~~ 79 (146)
++.=.-+-|.-+|+.|++.|.+=|=|-+ +|.-+|.++--.++..+++ .+++||.|=+-- -.| +
T Consensus 19 ~~~~pg~~d~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dt-GfG-----~- 91 (289)
T COG2513 19 PLVLPGAWDAGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDT-GFG-----E- 91 (289)
T ss_pred CEEecCCcCHHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEeccC-CCC-----c-
Confidence 4444456788999999999999999876 4566788887666666654 568999887765 334 2
Q ss_pred HHHHHHHHHHHHHHcCCCEEEE---------eeecCCCCcCHHHHHHHHHHhC
Q psy7930 80 EKEIMALDCHQFVESGADGFVI---------GALTGEQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 80 E~~~M~~dI~~~~~~GadG~Vf---------G~L~~dg~iD~~~~~~Li~~a~ 123 (146)
...-.+-|+.+.++|+.|+=+ |-|....-+|.+.+-.=|.+|.
T Consensus 92 -~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~ 143 (289)
T COG2513 92 -ALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAV 143 (289)
T ss_pred -HHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHH
Confidence 444557899999999998754 4454444567766655555553
No 443
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=69.66 E-value=36 Score=30.99 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=28.8
Q ss_pred HHHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhC
Q psy7930 21 SALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLV 58 (146)
Q Consensus 21 ~a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~ 58 (146)
=+.+|.+.||+||-||+ ..|.+||. ..+++.+++.+
T Consensus 151 ~~~~~~~~Ga~~i~l~D--TvG~~~P~~~~~~i~~l~~~~ 188 (494)
T TIGR00973 151 IVEAAINAGATTINIPD--TVGYALPAEYGNLIKGLRENV 188 (494)
T ss_pred HHHHHHHcCCCEEEeCC--CCCCCCHHHHHHHHHHHHHhh
Confidence 34567888999999999 48999994 56777777765
No 444
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=69.65 E-value=67 Score=27.01 Aligned_cols=107 Identities=19% Similarity=0.164 Sum_probs=56.0
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhh---CCCcEEE--EEc-cCCCCCcccCHHH-HHHHHH-HHH
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRL---VLVPVFV--MIR-VRAGFDFVFSQAE-KEIMAL-DCH 89 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~---~~ipv~v--MIR-P~R~gdF~Ys~~E-~~~M~~-dI~ 89 (146)
..+..+.+.|..-+|... ..|++|. .+.++.+++. .++-+.. +.+ . ....|.-..++ ++...+ -++
T Consensus 99 ~~~~e~l~~Gvt~ve~~~---~~g~~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 174 (377)
T TIGR01224 99 FRLKSMLRSGTTTAEVKS---GYGLDLETELKMLRAAKALHEEQPVDVVTTFLGAHA-VPPEFQGRPDDYVDGICEELIP 174 (377)
T ss_pred HHHHHHHHCCceEEEecc---cCCCCHHHHHHHHHHHHHHHhhCCCceEeeeeeccc-CCccccCCHHHHHHHHHHHHHH
Confidence 445667889999998874 3466653 2344444432 3344332 222 2 22121122111 222222 122
Q ss_pred HHHHcC-CCEEEEeeecCCCCcCHHHHHHHHHHhC--CCCeEEeec
Q psy7930 90 QFVESG-ADGFVIGALTGEQEIDIEFIRQLKTIIG--DRPITFHRA 132 (146)
Q Consensus 90 ~~~~~G-adG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~vtFHRA 132 (146)
...+.| ++++ +..-+.+....+.++++++.|+ +++++.|=.
T Consensus 175 ~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~~ 218 (377)
T TIGR01224 175 QVAEEGLASFA--DVFCEAGVFSVEQSRRILQAAQEAGLPVKLHAE 218 (377)
T ss_pred HHHHhCCCCee--EEEecCCCcCHHHHHHHHHHHHHCCCCEEEEec
Confidence 233333 4443 2233456677889999999887 889999964
No 445
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=69.57 E-value=47 Score=27.37 Aligned_cols=80 Identities=14% Similarity=0.076 Sum_probs=60.5
Q ss_pred HHHHHHH-HcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930 20 ASALAAV-RGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG 98 (146)
Q Consensus 20 ~~a~~A~-~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG 98 (146)
+.+..-+ +.|+|-|=+..| |++.-.++.+++..++||.=||.| -++.+ .+.+..+
T Consensus 51 ~~~~~L~~~~g~d~ivIaCN------TA~a~~~~~l~~~~~iPii~iie~-----------~v~~a-------~~~~~~~ 106 (251)
T TIGR00067 51 ELLTFLKERHNIKLLVVACN------TASALALEDLQRNFDFPVVGVIEP-----------AIKAA-------IRLTANG 106 (251)
T ss_pred HHHHHHHHhCCCCEEEEeCc------hHHHHHHHHHHHHCCCCEEeecHH-----------HHHHH-------HHhCCCC
Confidence 4445555 889999988776 888777999999999999999999 22222 2223323
Q ss_pred EEEeeecCCCCcCHHHHHHHHHHhCC
Q psy7930 99 FVIGALTGEQEIDIEFIRQLKTIIGD 124 (146)
Q Consensus 99 ~VfG~L~~dg~iD~~~~~~Li~~a~~ 124 (146)
.+|+|--.|++....-+++++..+.
T Consensus 107 -~IgvLAT~~Ti~s~~y~~~i~~~~~ 131 (251)
T TIGR00067 107 -RVLVIATNATIKSNAYHEALKEIAN 131 (251)
T ss_pred -eEEEEeCHHHHhhhHHHHHHHHhCC
Confidence 7899999999999999999987654
No 446
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=69.42 E-value=15 Score=32.06 Aligned_cols=69 Identities=17% Similarity=0.222 Sum_probs=48.1
Q ss_pred cCHHHHHHHHHcCC--CEEEecCCCCCCCCCCCHHHHHHHHhhCC-CcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHH
Q psy7930 17 DSVASALAAVRGGA--DRLELCAALSEGGLTPTLGLYRVIKRLVL-VPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVE 93 (146)
Q Consensus 17 ~s~~~a~~A~~~GA--dRIELc~~l~~GGlTPS~g~i~~~~~~~~-ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~ 93 (146)
+..+.+..-.++|+ |-|.|=... |....-..+++++++... +|| |.=. -+ |. ++.+.+.+
T Consensus 97 ~~~~~~~~Lv~ag~~~d~i~iD~a~--gh~~~~~e~I~~ir~~~p~~~v--i~g~-V~-----t~-------e~a~~l~~ 159 (326)
T PRK05458 97 DEYDFVDQLAAEGLTPEYITIDIAH--GHSDSVINMIQHIKKHLPETFV--IAGN-VG-----TP-------EAVRELEN 159 (326)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCC--CchHHHHHHHHHHHhhCCCCeE--EEEe-cC-----CH-------HHHHHHHH
Confidence 44577888888855 999984432 777777888999988763 554 4432 11 22 45677788
Q ss_pred cCCCEEEEe
Q psy7930 94 SGADGFVIG 102 (146)
Q Consensus 94 ~GadG~VfG 102 (146)
+|+|++.+|
T Consensus 160 aGad~i~vg 168 (326)
T PRK05458 160 AGADATKVG 168 (326)
T ss_pred cCcCEEEEC
Confidence 999999988
No 447
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=69.18 E-value=37 Score=29.42 Aligned_cols=85 Identities=14% Similarity=0.187 Sum_probs=52.8
Q ss_pred CCCCCCCCCCCH-------HHHHHHHhhCC----CcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeec
Q psy7930 37 AALSEGGLTPTL-------GLYRVIKRLVL----VPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALT 105 (146)
Q Consensus 37 ~~l~~GGlTPS~-------g~i~~~~~~~~----ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~ 105 (146)
..+..||=|||. .+++.+++... ..|.+=.+| . + .+. +.++.++++|++-+-+|+-+
T Consensus 57 ~tiy~GGGTPs~l~~~~L~~ll~~i~~~f~~~~~~eit~E~~P-~--~--i~~-------e~L~~l~~~GvnrislGvQS 124 (380)
T PRK09057 57 TSIFFGGGTPSLMQPETVAALLDAIARLWPVADDIEITLEANP-T--S--VEA-------GRFRGYRAAGVNRVSLGVQA 124 (380)
T ss_pred CeEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCccEEEEECc-C--c--CCH-------HHHHHHHHcCCCEEEEeccc
Confidence 467889999983 34555555443 246777888 2 2 233 66777889999999999987
Q ss_pred CCCC--------cCHHHHHHHHHHhC--CCCeEEeecc
Q psy7930 106 GEQE--------IDIEFIRQLKTIIG--DRPITFHRAF 133 (146)
Q Consensus 106 ~dg~--------iD~~~~~~Li~~a~--~~~vtFHRAF 133 (146)
-|-+ -+.+...+.++.++ ...+.++--|
T Consensus 125 ~~d~vL~~l~R~~~~~~~~~ai~~~~~~~~~v~~dli~ 162 (380)
T PRK09057 125 LNDADLRFLGRLHSVAEALAAIDLAREIFPRVSFDLIY 162 (380)
T ss_pred CCHHHHHHcCCCCCHHHHHHHHHHHHHhCccEEEEeec
Confidence 6532 24444444444443 3445554443
No 448
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=68.91 E-value=10 Score=29.41 Aligned_cols=45 Identities=18% Similarity=0.340 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEE
Q psy7930 81 KEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITF 129 (146)
Q Consensus 81 ~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtF 129 (146)
.+.+.+.++.+.+.|+|||++...+++..- +.++++.+ .++|+++
T Consensus 41 ~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~--~~l~~~~~--~gIpvv~ 85 (257)
T PF13407_consen 41 PEEQIEQIEQAISQGVDGIIVSPVDPDSLA--PFLEKAKA--AGIPVVT 85 (257)
T ss_dssp HHHHHHHHHHHHHTTESEEEEESSSTTTTH--HHHHHHHH--TTSEEEE
T ss_pred HHHHHHHHHHHHHhcCCEEEecCCCHHHHH--HHHHHHhh--cCceEEE
Confidence 366668889999999999999988775432 44444333 4788776
No 449
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=68.80 E-value=30 Score=28.81 Aligned_cols=88 Identities=13% Similarity=0.055 Sum_probs=64.3
Q ss_pred EecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHH
Q psy7930 15 CVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVE 93 (146)
Q Consensus 15 cv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~ 93 (146)
...|+.-+..+...|-|-+-+-. +.|.+ +...+....... ..++.+|+|+ ...| ...|+.+.+
T Consensus 26 ~~~sp~~~e~~a~~G~D~v~iD~--EHg~~--~~~~~~~~i~a~~~~g~~~lVRv-p~~~-----------~~~i~r~LD 89 (256)
T PRK10558 26 ALANPITTEVLGLAGFDWLVLDG--EHAPN--DVSTFIPQLMALKGSASAPVVRV-PTNE-----------PVIIKRLLD 89 (256)
T ss_pred cCCCcHHHHHHHhcCCCEEEEcc--ccCCC--CHHHHHHHHHHHhhcCCCcEEEC-CCCC-----------HHHHHHHhC
Confidence 35677888888999999998864 44444 444555444433 4677889998 6665 246777889
Q ss_pred cCCCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930 94 SGADGFVIGALTGEQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 94 ~GadG~VfG~L~~dg~iD~~~~~~Li~~a~ 123 (146)
.|++||++=.++ +.+..++++++++
T Consensus 90 ~Ga~giivP~v~-----tae~a~~~v~a~k 114 (256)
T PRK10558 90 IGFYNFLIPFVE-----TAEEARRAVASTR 114 (256)
T ss_pred CCCCeeeecCcC-----CHHHHHHHHHHcC
Confidence 999999987665 4678899999997
No 450
>PRK06801 hypothetical protein; Provisional
Probab=68.71 E-value=74 Score=27.14 Aligned_cols=103 Identities=14% Similarity=0.142 Sum_probs=67.7
Q ss_pred cCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhh------CCCcEEEEEccCCCC-----------CcccCH-
Q psy7930 17 DSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRL------VLVPVFVMIRVRAGF-----------DFVFSQ- 78 (146)
Q Consensus 17 ~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~------~~ipv~vMIRP~R~g-----------dF~Ys~- 78 (146)
.+++.+..|.++|++-|=+=.+ .-|--.-++.+++. .+++|-.-+-. =|| .=+||+
T Consensus 85 ~~~e~i~~Ai~~GftSVm~D~S-----~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~-vgg~e~~v~~~~~~~~~~T~p 158 (286)
T PRK06801 85 LHFEAVVRALRLGFSSVMFDGS-----TLEYEENVRQTREVVKMCHAVGVSVEAELGA-VGGDEGGALYGEADSAKFTDP 158 (286)
T ss_pred CCHHHHHHHHHhCCcEEEEcCC-----CCCHHHHHHHHHHHHHHHHHcCCeEEeecCc-ccCCCCCcccCCcccccCCCH
Confidence 4789999999999999988432 12434455554432 37777666654 332 123543
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEeeecCCC------CcCHHHHHHHHHHhCCCCeEEeec
Q psy7930 79 AEKEIMALDCHQFVESGADGFVIGALTGEQ------EIDIEFIRQLKTIIGDRPITFHRA 132 (146)
Q Consensus 79 ~E~~~M~~dI~~~~~~GadG~VfG~L~~dg------~iD~~~~~~Li~~a~~~~vtFHRA 132 (146)
+|.. +..++.|+|-+.+.+=|..| .+|.++++++.+.. ++|++.|=.
T Consensus 159 e~a~------~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~-~~PLVlHGG 211 (286)
T PRK06801 159 QLAR------DFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQT-GLPLVLHGG 211 (286)
T ss_pred HHHH------HHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhc-CCCEEEECC
Confidence 2222 23336899988886655554 59999999997765 699999965
No 451
>PRK14847 hypothetical protein; Provisional
Probab=68.67 E-value=47 Score=29.16 Aligned_cols=77 Identities=13% Similarity=-0.019 Sum_probs=49.4
Q ss_pred eeEEEecCHHH---------HHHHHHc------CCCEEEecCCCCCCCCCCC--HHHHHHHHhhC----CCcEEEEEccC
Q psy7930 11 TLEVCVDSVAS---------ALAAVRG------GADRLELCAALSEGGLTPT--LGLYRVIKRLV----LVPVFVMIRVR 69 (146)
Q Consensus 11 ~lEvcv~s~~~---------a~~A~~~------GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~----~ipv~vMIRP~ 69 (146)
.+|+..++..- +.+|.+. ||+||-|++ .+|-+||. +..++.+++.+ ++|+-+..-.
T Consensus 173 ~V~~~~EDasRad~dfL~~~~~~a~~~~ga~r~~a~~i~l~D--TVG~~~P~~~~~~i~~l~~~~~~~~~v~i~~H~Hn- 249 (333)
T PRK14847 173 IYEYSPETFSLAELDFAREVCDAVSAIWGPTPQRKMIINLPA--TVESSTANVYADQIEWMHRSLARRDCIVLSVHPHN- 249 (333)
T ss_pred EEEEeeecCCCCCHHHHHHHHHHHHHHhCCCccCCcEEEeCC--ccccCCHHHHHHHHHHHHHhcCCCCCcEEEEEeCC-
Confidence 47777776531 2333333 577799998 48999995 57888887766 5777666555
Q ss_pred CCCCcccCHHHHHHHHHHHHHHHHcCCCEEE
Q psy7930 70 AGFDFVFSQAEKEIMALDCHQFVESGADGFV 100 (146)
Q Consensus 70 R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~V 100 (146)
.-| .-..-...+.+.||+.|=
T Consensus 250 D~G----------lA~ANslaA~~aGa~~i~ 270 (333)
T PRK14847 250 DRG----------TAVAAAELAVLAGAERIE 270 (333)
T ss_pred CCc----------hHHHHHHHHHHhCCCEEE
Confidence 333 222445566788987653
No 452
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=68.66 E-value=11 Score=29.76 Aligned_cols=80 Identities=11% Similarity=0.100 Sum_probs=51.9
Q ss_pred ccceeEEEecCHHHH----HHHHHcCCCEEEecCCCCCCCCCC-CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHH
Q psy7930 8 NKTTLEVCVDSVASA----LAAVRGGADRLELCAALSEGGLTP-TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKE 82 (146)
Q Consensus 8 ~~~~lEvcv~s~~~a----~~A~~~GAdRIELc~~l~~GGlTP-S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~ 82 (146)
++++--+-..+.+++ .++.++|++-|||-.. || +..+++.+++... .++. ..| -+.+.
T Consensus 12 ~~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k------~~~~~e~~~~~~~~~~-----~~~~-g~g-tvl~~---- 74 (187)
T PRK07455 12 HRAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWN------SDQPAELISQLREKLP-----ECII-GTG-TILTL---- 74 (187)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCC------CCCHHHHHHHHHHhCC-----CcEE-eEE-EEEcH----
Confidence 344555666666664 4577789999999863 33 3567777766443 2333 233 34443
Q ss_pred HHHHHHHHHHHcCCCEEEEeeecCC
Q psy7930 83 IMALDCHQFVESGADGFVIGALTGE 107 (146)
Q Consensus 83 ~M~~dI~~~~~~GadG~VfG~L~~d 107 (146)
++++.+.++||||++.|.++++
T Consensus 75 ---d~~~~A~~~gAdgv~~p~~~~~ 96 (187)
T PRK07455 75 ---EDLEEAIAAGAQFCFTPHVDPE 96 (187)
T ss_pred ---HHHHHHHHcCCCEEECCCCCHH
Confidence 3667788999999999987753
No 453
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=68.66 E-value=11 Score=33.16 Aligned_cols=45 Identities=18% Similarity=0.118 Sum_probs=34.5
Q ss_pred HHHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhCC-CcEEEEEc
Q psy7930 21 SALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLVL-VPVFVMIR 67 (146)
Q Consensus 21 ~a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~~-ipv~vMIR 67 (146)
-+..+.+.|||||-||+- .|-+||. ..+++.+++.++ +||.+-.-
T Consensus 202 ~~~~~~~~Gad~I~l~DT--~G~a~P~~v~~lv~~l~~~~~~~~i~~H~H 249 (347)
T PLN02746 202 VAKELYDMGCYEISLGDT--IGVGTPGTVVPMLEAVMAVVPVDKLAVHFH 249 (347)
T ss_pred HHHHHHHcCCCEEEecCC--cCCcCHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 357789999999999994 7999994 678888887765 35555443
No 454
>KOG3379|consensus
Probab=68.56 E-value=6 Score=31.12 Aligned_cols=19 Identities=42% Similarity=0.382 Sum_probs=16.1
Q ss_pred Cc-EEEEEccCCCCCcccCH
Q psy7930 60 VP-VFVMIRVRAGFDFVFSQ 78 (146)
Q Consensus 60 ip-v~vMIRP~R~gdF~Ys~ 78 (146)
+| |||-|=||+.|||.=|+
T Consensus 96 VpHvHvHIlPR~~gDf~~Nd 115 (150)
T KOG3379|consen 96 VPHVHVHILPRKAGDFGDND 115 (150)
T ss_pred cceeEEEEccccccccccch
Confidence 55 89999999999998773
No 455
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=68.49 E-value=54 Score=28.86 Aligned_cols=27 Identities=41% Similarity=0.564 Sum_probs=16.9
Q ss_pred cceeEEEecC--H----HHHHHHHHcCCCEEEe
Q psy7930 9 KTTLEVCVDS--V----ASALAAVRGGADRLEL 35 (146)
Q Consensus 9 ~~~lEvcv~s--~----~~a~~A~~~GAdRIEL 35 (146)
++.|.+..+- + +-+..+.++|.+-||.
T Consensus 3 ~~~l~~alD~~~~~~~~~~~~~~~~~Gv~~ie~ 35 (430)
T PRK07028 3 RPILQVALDLLELDRAVEIAKEAVAGGADWIEA 35 (430)
T ss_pred CceEEEEeccCCHHHHHHHHHHHHhcCCcEEEe
Confidence 4455665543 3 3344556689999996
No 456
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=68.37 E-value=69 Score=26.69 Aligned_cols=98 Identities=19% Similarity=0.267 Sum_probs=61.5
Q ss_pred CHHHHHHHH----HcCCCEEEecCC-CC----CCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930 18 SVASALAAV----RGGADRLELCAA-LS----EGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDC 88 (146)
Q Consensus 18 s~~~a~~A~----~~GAdRIELc~~-l~----~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI 88 (146)
|+++...|. +.|.+.|-||-. .+ ..=.++....+...++..++|| ++-|.+.++. .|+ ...-.
T Consensus 144 t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV--~~ds~Hs~G~----r~~--~~~~~ 215 (260)
T TIGR01361 144 TIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPI--IVDPSHAAGR----RDL--VIPLA 215 (260)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCE--EEcCCCCCCc----cch--HHHHH
Confidence 566666554 468889999853 21 1123445778888888778886 5655343321 111 11235
Q ss_pred HHHHHcCCCEEEEee-ecCC-------CCcCHHHHHHHHHHhC
Q psy7930 89 HQFVESGADGFVIGA-LTGE-------QEIDIEFIRQLKTIIG 123 (146)
Q Consensus 89 ~~~~~~GadG~VfG~-L~~d-------g~iD~~~~~~Li~~a~ 123 (146)
..+..+||+|+++=. .|+| .+++.+.+++|++..+
T Consensus 216 ~aAva~Ga~gl~iE~H~t~d~a~~D~~~sl~p~~l~~lv~~i~ 258 (260)
T TIGR01361 216 KAAIAAGADGLMIEVHPDPEKALSDSKQQLTPEEFKRLVKELR 258 (260)
T ss_pred HHHHHcCCCEEEEEeCCCccccCCcchhcCCHHHHHHHHHHHh
Confidence 567899999988763 2333 3689999999988765
No 457
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=68.02 E-value=23 Score=29.90 Aligned_cols=80 Identities=21% Similarity=0.293 Sum_probs=51.4
Q ss_pred eeEEEecC--HHHHHHHHHcCCCEEEecC--CCCCCCCCCCHHHHH----HHHhhC-CCcEEEEEccCCCCCcccCHHHH
Q psy7930 11 TLEVCVDS--VASALAAVRGGADRLELCA--ALSEGGLTPTLGLYR----VIKRLV-LVPVFVMIRVRAGFDFVFSQAEK 81 (146)
Q Consensus 11 ~lEvcv~s--~~~a~~A~~~GAdRIELc~--~l~~GGlTPS~g~i~----~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~ 81 (146)
-+=|||.+ ++....|+++|||=||+=. .+..-|..=+..-+- +.|+.+ ++|+.|-| | +...-+|.
T Consensus 61 ~lPICVSaVep~~f~~aV~AGAdliEIGNfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTV-P-----HiL~ld~Q 134 (242)
T PF04481_consen 61 NLPICVSAVEPELFVAAVKAGADLIEIGNFDSFYAQGRRFSAEEVLALTRETRSLLPDITLSVTV-P-----HILPLDQQ 134 (242)
T ss_pred CCCeEeecCCHHHHHHHHHhCCCEEEecchHHHHhcCCeecHHHHHHHHHHHHHhCCCCceEEec-C-----ccccHHHH
Confidence 46678875 5889999999999999974 455556665544333 333333 67777766 4 23333333
Q ss_pred HHHHHHHHHHHHcCCCEE
Q psy7930 82 EIMALDCHQFVESGADGF 99 (146)
Q Consensus 82 ~~M~~dI~~~~~~GadG~ 99 (146)
. +-...+.++|+|=+
T Consensus 135 v---~LA~~L~~~GaDiI 149 (242)
T PF04481_consen 135 V---QLAEDLVKAGADII 149 (242)
T ss_pred H---HHHHHHHHhCCcEE
Confidence 3 34455678899865
No 458
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=67.72 E-value=26 Score=27.79 Aligned_cols=88 Identities=20% Similarity=0.181 Sum_probs=56.8
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhCC-CcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCC
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLVL-VPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGA 96 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~~-ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Ga 96 (146)
+-+..+.+.|+++|-||+. .|-++|. ..+++.+++..+ +|+.+-..- .-| +- ..-...+.++|+
T Consensus 141 ~~~~~~~~~g~~~i~l~Dt--~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hn-d~G-la---------~An~laA~~aGa 207 (237)
T PF00682_consen 141 ELAEALAEAGADIIYLADT--VGIMTPEDVAELVRALREALPDIPLGFHAHN-DLG-LA---------VANALAALEAGA 207 (237)
T ss_dssp HHHHHHHHHT-SEEEEEET--TS-S-HHHHHHHHHHHHHHSTTSEEEEEEBB-TTS--H---------HHHHHHHHHTT-
T ss_pred HHHHHHHHcCCeEEEeeCc--cCCcCHHHHHHHHHHHHHhccCCeEEEEecC-Ccc-ch---------hHHHHHHHHcCC
Confidence 3456677779999999984 7999994 678899998886 888887766 444 11 233455677899
Q ss_pred CEE---EEeeecCCCCcCHHHHHHHHH
Q psy7930 97 DGF---VIGALTGEQEIDIEFIRQLKT 120 (146)
Q Consensus 97 dG~---VfG~L~~dg~iD~~~~~~Li~ 120 (146)
+-| +.|.=..-|..+++.+-..++
T Consensus 208 ~~id~t~~GlG~~~Gn~~le~lv~~L~ 234 (237)
T PF00682_consen 208 DRIDGTLGGLGERAGNAPLEELVAALE 234 (237)
T ss_dssp SEEEEBGGGGSSTTSB-BHHHHHHHHH
T ss_pred CEEEccCccCCCCCCCccHHHHHHHHh
Confidence 865 334335577888887665554
No 459
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=67.64 E-value=22 Score=25.91 Aligned_cols=62 Identities=6% Similarity=0.173 Sum_probs=44.5
Q ss_pred CcEEEEEccCCCCCcccCHHH--------HHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCC
Q psy7930 60 VPVFVMIRVRAGFDFVFSQAE--------KEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDR 125 (146)
Q Consensus 60 ipv~vMIRP~R~gdF~Ys~~E--------~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~ 125 (146)
-++.+.|.+ .|.+.++... ++.+...++..++...+.-|+ |..|+.+....+-+++++++..
T Consensus 50 ~~~~i~i~~--~g~~~~~~~~~~~~~~~~~~~L~~~L~~~~~~~~~~~v~--i~aD~~~~~~~vv~vmd~~~~~ 119 (129)
T TIGR02801 50 KPITVSVDA--DGKIYLNDNKIDKDEQLDADELLAEIAAALAANPDTPVL--IRADKTVPYGEVIKVMALLKQA 119 (129)
T ss_pred CCEEEEEeC--CCcEEEcccccchhhhcCHHHHHHHHHHHHhhCCCceEE--EEcCCCCCHHHHHHHHHHHHHc
Confidence 467788877 6777776543 344556666665555555554 8999999999999999999843
No 460
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=67.44 E-value=68 Score=26.29 Aligned_cols=89 Identities=22% Similarity=0.140 Sum_probs=57.8
Q ss_pred HHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhCC---CcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCC
Q psy7930 22 ALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLVL---VPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGA 96 (146)
Q Consensus 22 a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~~---ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Ga 96 (146)
+..+.+.|+++|-||+. .|-+||. ..+++.+++..+ +|+.+---- .-| +. ..-...+.++|+
T Consensus 149 ~~~~~~~G~~~i~l~DT--~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn-~~G--------lA--~An~laAi~aG~ 215 (268)
T cd07940 149 VEAAIEAGATTINIPDT--VGYLTPEEFGELIKKLKENVPNIKVPISVHCHN-DLG--------LA--VANSLAAVEAGA 215 (268)
T ss_pred HHHHHHcCCCEEEECCC--CCCCCHHHHHHHHHHHHHhCCCCceeEEEEecC-Ccc--------hH--HHHHHHHHHhCC
Confidence 34567789999999994 7889994 678888888765 665554433 222 22 233344456798
Q ss_pred C---EEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930 97 D---GFVIGALTGEQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 97 d---G~VfG~L~~dg~iD~~~~~~Li~~a~ 123 (146)
+ +=+.|.=..-|.+..+.+-..++.-+
T Consensus 216 ~~iD~s~~GlG~~aGN~~tE~lv~~L~~~~ 245 (268)
T cd07940 216 RQVECTINGIGERAGNAALEEVVMALKTRY 245 (268)
T ss_pred CEEEEEeeccccccccccHHHHHHHHHhcc
Confidence 6 33445434567888887777666554
No 461
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=67.34 E-value=73 Score=27.37 Aligned_cols=85 Identities=11% Similarity=0.053 Sum_probs=50.8
Q ss_pred CCCCCCCCCCCH-------HHHHHHHhhCC----CcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeec
Q psy7930 37 AALSEGGLTPTL-------GLYRVIKRLVL----VPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALT 105 (146)
Q Consensus 37 ~~l~~GGlTPS~-------g~i~~~~~~~~----ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~ 105 (146)
..+..||=|||. .+++.+++..+ ..+.+-.+| . . .+++ .++.++++|++.|-+|+-+
T Consensus 61 ~~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~e~~p-~--~--i~~e-------~l~~l~~~G~~rvslGvQS 128 (375)
T PRK05628 61 STVFVGGGTPSLLGAEGLARVLDAVRDTFGLAPGAEVTTEANP-E--S--TSPE-------FFAALRAAGFTRVSLGMQS 128 (375)
T ss_pred eEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCC-C--C--CCHH-------HHHHHHHcCCCEEEEeccc
Confidence 356789999993 34444444433 345666677 2 2 2443 3456677899999999977
Q ss_pred CCC--------CcCHHHHHHHHHHhC--CCC-eEEeecc
Q psy7930 106 GEQ--------EIDIEFIRQLKTIIG--DRP-ITFHRAF 133 (146)
Q Consensus 106 ~dg--------~iD~~~~~~Li~~a~--~~~-vtFHRAF 133 (146)
-+- ..+.+...+.++.++ +++ +.++--+
T Consensus 129 ~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~ 167 (375)
T PRK05628 129 AAPHVLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIY 167 (375)
T ss_pred CCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 652 234555555555554 455 5444433
No 462
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=67.27 E-value=11 Score=34.70 Aligned_cols=65 Identities=28% Similarity=0.420 Sum_probs=42.1
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhCCCc-EEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCC
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLVLVP-VFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGA 96 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~~ip-v~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Ga 96 (146)
+-+.+|.+.||+||=||+ ..|++||. ..+++.+++.++.| +-+. + .|+-.+.. .-...+.++||
T Consensus 158 ~~~~~a~~aGad~i~i~D--TvG~~~P~~v~~li~~l~~~~~~~~i~vH--~-------HND~GlAv--ANslaAv~AGA 224 (526)
T TIGR00977 158 ATLATAQQAGADWLVLCD--TNGGTLPHEISEITTKVKRSLKQPQLGIH--A-------HNDSGTAV--ANSLLAVEAGA 224 (526)
T ss_pred HHHHHHHhCCCCeEEEec--CCCCcCHHHHHHHHHHHHHhCCCCEEEEE--E-------CCCCChHH--HHHHHHHHhCC
Confidence 345667889999999998 48999995 67888888776533 3222 2 22223333 34455567787
Q ss_pred C
Q psy7930 97 D 97 (146)
Q Consensus 97 d 97 (146)
+
T Consensus 225 ~ 225 (526)
T TIGR00977 225 T 225 (526)
T ss_pred C
Confidence 6
No 463
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=67.14 E-value=23 Score=28.64 Aligned_cols=70 Identities=20% Similarity=0.220 Sum_probs=51.0
Q ss_pred ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930 16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG 95 (146)
Q Consensus 16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G 95 (146)
+.|+.++..|.+.|++-+-|==+=..|| ...++.++.-.. .+..| | .||= -..++..+.++|
T Consensus 108 ~~TptEi~~A~~~G~~~vK~FPA~~~GG----~~~ik~l~~p~p-~~~~~--p-tGGV----------~~~N~~~~l~ag 169 (196)
T PF01081_consen 108 VMTPTEIMQALEAGADIVKLFPAGALGG----PSYIKALRGPFP-DLPFM--P-TGGV----------NPDNLAEYLKAG 169 (196)
T ss_dssp ESSHHHHHHHHHTT-SEEEETTTTTTTH----HHHHHHHHTTTT-T-EEE--E-BSS------------TTTHHHHHTST
T ss_pred cCCHHHHHHHHHCCCCEEEEecchhcCc----HHHHHHHhccCC-CCeEE--E-cCCC----------CHHHHHHHHhCC
Confidence 6789999999999999999985544554 578887776442 24444 8 8882 125788999999
Q ss_pred CCEEEEee
Q psy7930 96 ADGFVIGA 103 (146)
Q Consensus 96 adG~VfG~ 103 (146)
+.+++.|=
T Consensus 170 ~~~vg~Gs 177 (196)
T PF01081_consen 170 AVAVGGGS 177 (196)
T ss_dssp TBSEEEES
T ss_pred CEEEEECc
Confidence 99999983
No 464
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=67.07 E-value=13 Score=28.94 Aligned_cols=62 Identities=11% Similarity=0.200 Sum_probs=35.5
Q ss_pred cEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeE-Eeeccc
Q psy7930 61 PVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPIT-FHRAFD 134 (146)
Q Consensus 61 pv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vt-FHRAFD 134 (146)
.+.+++.. -.+ +.+.+.+-++.+.+.++||+++...+.+ .+.+.++++. ..+.|++ +++..+
T Consensus 30 ~~~~~~~~-~~~-------~~~~~~~~i~~l~~~~vdgiii~~~~~~--~~~~~~~~l~--~~~iPvv~~~~~~~ 92 (272)
T cd06301 30 GVELQFED-AKN-------DVATQLSQVENFIAQGVDAIIVVPVDTA--ATAPIVKAAN--AAGIPLVYVNRRPE 92 (272)
T ss_pred CcEEEEeC-CCC-------CHHHHHHHHHHHHHcCCCEEEEecCchh--hhHHHHHHHH--HCCCeEEEecCCCC
Confidence 56667766 222 2244556677888899999998765532 2223333332 2466754 555443
No 465
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=66.79 E-value=6.2 Score=33.58 Aligned_cols=78 Identities=26% Similarity=0.290 Sum_probs=49.8
Q ss_pred EEecCHHHHHHHHHcCCCEEEecCCCCCCCC---CCC------HHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHH
Q psy7930 14 VCVDSVASALAAVRGGADRLELCAALSEGGL---TPT------LGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEI 83 (146)
Q Consensus 14 vcv~s~~~a~~A~~~GAdRIELc~~l~~GGl---TPS------~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~ 83 (146)
--|+|+++|.++.++|||-|-+.-.+..||+ +|. ..+++.+-+.. ++.--|++-. +||--.-.+
T Consensus 161 ~yV~s~~eAqa~~~aGadiiv~hmg~ttgG~Igar~~~Sl~~~vel~~~~~~aar~v~kd~i~l~-~GGPi~~p~----- 234 (276)
T COG5564 161 PYVFSFEEAQAMTKAGADIIVAHMGLTTGGLIGARSALSLADCVELIELAAEAARGVRKDVIPLC-HGGPISMPE----- 234 (276)
T ss_pred ceecCHHHHHHHHHcCcceeeecccccccceeccccccCHHHHHHHHHHHHHHHhhhhhceeeec-cCCCcCCch-----
Confidence 3589999999999999999999988888875 333 23444443332 4444445556 677555332
Q ss_pred HHHHHHHHH--HcCCCEEE
Q psy7930 84 MALDCHQFV--ESGADGFV 100 (146)
Q Consensus 84 M~~dI~~~~--~~GadG~V 100 (146)
|.+... --|+|||.
T Consensus 235 ---da~yi~d~c~~~~gfy 250 (276)
T COG5564 235 ---DARYILDRCPGCDGFY 250 (276)
T ss_pred ---hhHHHHhhCCCCCccc
Confidence 222222 24788874
No 466
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=66.68 E-value=63 Score=30.28 Aligned_cols=91 Identities=19% Similarity=0.137 Sum_probs=59.5
Q ss_pred HHHHHHcCCCEEEecCCCCCCCCCC---------C-HHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHH
Q psy7930 22 ALAAVRGGADRLELCAALSEGGLTP---------T-LGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQ 90 (146)
Q Consensus 22 a~~A~~~GAdRIELc~~l~~GGlTP---------S-~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~ 90 (146)
+....+.|.+.||.- ||.|- + ..-++.+++.. ++++..+.|. . .-.-|++.-=+.++.+++.
T Consensus 32 a~~l~~~G~~~iE~~-----ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg-~-N~~gy~~ypd~vv~~~v~~ 104 (592)
T PRK09282 32 AEKLDKVGFWSLEVW-----GGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRG-Q-NLVGYRHYPDDVVEKFVEK 104 (592)
T ss_pred HHHHHHcCCCEEEec-----CCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEecc-c-cccccccccchhhHHHHHH
Confidence 334566799999994 66551 1 23455555553 6899999986 2 2244555555677889999
Q ss_pred HHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930 91 FVESGADGFVIGALTGEQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 91 ~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~ 123 (146)
+.+.|+|-|-+-. += =|...+.+.++.++
T Consensus 105 A~~~Gvd~irif~--~l--nd~~n~~~~i~~ak 133 (592)
T PRK09282 105 AAENGIDIFRIFD--AL--NDVRNMEVAIKAAK 133 (592)
T ss_pred HHHCCCCEEEEEE--ec--ChHHHHHHHHHHHH
Confidence 9999999654432 21 13467777888776
No 467
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=66.58 E-value=77 Score=29.80 Aligned_cols=89 Identities=17% Similarity=0.139 Sum_probs=60.9
Q ss_pred HHHHcCCCEEEecCCCCCCCCCCC----------HHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHH
Q psy7930 24 AAVRGGADRLELCAALSEGGLTPT----------LGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFV 92 (146)
Q Consensus 24 ~A~~~GAdRIELc~~l~~GGlTPS----------~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~ 92 (146)
...+.|.+-||.- ||-|-. ..-++.+++.. +.|+..+.|- . .-..|+..-=+.+..|++.+.
T Consensus 35 ~ld~~G~~siE~~-----GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg-~-n~vg~~~ypddvv~~~v~~a~ 107 (593)
T PRK14040 35 KLDKVGYWSLESW-----GGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRG-Q-NLLGYRHYADDVVERFVERAV 107 (593)
T ss_pred HHHHcCCCEEEec-----CCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecC-c-ceeccccCcHHHHHHHHHHHH
Confidence 3456799999983 442221 45667777655 6889888864 2 224455544456788999999
Q ss_pred HcCCCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930 93 ESGADGFVIGALTGEQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 93 ~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~ 123 (146)
+.|+|.|-+. |.-=|.+.++..++.|+
T Consensus 108 ~~Gid~~rif----d~lnd~~~~~~ai~~ak 134 (593)
T PRK14040 108 KNGMDVFRVF----DAMNDPRNLETALKAVR 134 (593)
T ss_pred hcCCCEEEEe----eeCCcHHHHHHHHHHHH
Confidence 9999988776 23344678888888887
No 468
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=66.48 E-value=68 Score=28.38 Aligned_cols=99 Identities=19% Similarity=0.253 Sum_probs=66.6
Q ss_pred CHHHHHHHH----HcCCCEEEecCC----CC--CCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHH
Q psy7930 18 SVASALAAV----RGGADRLELCAA----LS--EGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALD 87 (146)
Q Consensus 18 s~~~a~~A~----~~GAdRIELc~~----l~--~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~d 87 (146)
++++...|. +.|-+.|=||-. .. --=.|+....+...++..++|| ++-|+++.+| ++--. .=
T Consensus 220 t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~~lPV--i~DpsH~~G~--sd~~~----~~ 291 (352)
T PRK13396 220 TIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLTHLPI--MIDPSHGTGK--SEYVP----SM 291 (352)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhhCCCE--EECCcccCCc--HHHHH----HH
Confidence 555555554 458899999954 11 1146778888998888888896 7788555432 22211 33
Q ss_pred HHHHHHcCCCEEEEeee-cC-----C--CCcCHHHHHHHHHHhCC
Q psy7930 88 CHQFVESGADGFVIGAL-TG-----E--QEIDIEFIRQLKTIIGD 124 (146)
Q Consensus 88 I~~~~~~GadG~VfG~L-~~-----d--g~iD~~~~~~Li~~a~~ 124 (146)
...+..+||||+++=.= |+ | .+++.+.+++|++..+.
T Consensus 292 a~AAva~GAdGliIE~H~~pd~AlsD~~qsl~p~~~~~l~~~i~~ 336 (352)
T PRK13396 292 AMAAIAAGTDSLMIEVHPNPAKALSDGPQSLTPDRFDRLMQELAV 336 (352)
T ss_pred HHHHHhhCCCeEEEEecCCcccCCChhhhcCCHHHHHHHHHHHHH
Confidence 46677899999998641 22 2 36999999999887763
No 469
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=66.38 E-value=16 Score=29.71 Aligned_cols=69 Identities=17% Similarity=0.209 Sum_probs=44.3
Q ss_pred cceeEEEecCHHH----HHHHHHcCCCEEEecCCCCCCCCCCC-HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHH
Q psy7930 9 KTTLEVCVDSVAS----ALAAVRGGADRLELCAALSEGGLTPT-LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEI 83 (146)
Q Consensus 9 ~~~lEvcv~s~~~----a~~A~~~GAdRIELc~~l~~GGlTPS-~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~ 83 (146)
++++|.|--+-+. +..|.++|||-|-.......+|.||. ..+|+++... ++| |-+ .|| -. |.++...
T Consensus 121 KvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~~-~v~----IKa-aGG-ir-t~~~a~~ 192 (211)
T TIGR00126 121 KVIIETGLLTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVGD-TIG----VKA-SGG-VR-TAEDAIA 192 (211)
T ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhcc-CCe----EEE-eCC-CC-CHHHHHH
Confidence 4578888766444 45678889999999999988998875 3566555442 333 344 455 33 4444444
Q ss_pred HH
Q psy7930 84 MA 85 (146)
Q Consensus 84 M~ 85 (146)
|.
T Consensus 193 ~i 194 (211)
T TIGR00126 193 MI 194 (211)
T ss_pred HH
Confidence 43
No 470
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=66.38 E-value=34 Score=30.16 Aligned_cols=77 Identities=22% Similarity=0.155 Sum_probs=46.0
Q ss_pred eEEEecCHHHHHHHHHcC-CCEEEecCCCCCCCC----------CCCHHHHHHHHhhC-------CCcEEEEEccCCCCC
Q psy7930 12 LEVCVDSVASALAAVRGG-ADRLELCAALSEGGL----------TPTLGLYRVIKRLV-------LVPVFVMIRVRAGFD 73 (146)
Q Consensus 12 lEvcv~s~~~a~~A~~~G-AdRIELc~~l~~GGl----------TPS~g~i~~~~~~~-------~ipv~vMIRP~R~gd 73 (146)
+++...+.+++..+.+.| +|-|-+-..-.-+|. .|+.-.+..+.+.+ ++||.+ -||
T Consensus 220 K~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~via-----sGG- 293 (392)
T cd02808 220 KLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIA-----SGG- 293 (392)
T ss_pred EECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEE-----ECC-
Confidence 444443777777776665 999996654211111 35555555555433 456543 233
Q ss_pred cccCHHHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930 74 FVFSQAEKEIMALDCHQFVESGADGFVIG 102 (146)
Q Consensus 74 F~Ys~~E~~~M~~dI~~~~~~GadG~VfG 102 (146)
+.-. .|+..+..+|||+|-+|
T Consensus 294 I~~g--------~Dv~kalaLGAd~V~ig 314 (392)
T cd02808 294 LRTG--------ADVAKALALGADAVGIG 314 (392)
T ss_pred CCCH--------HHHHHHHHcCCCeeeec
Confidence 4332 58888999999999876
No 471
>PRK09358 adenosine deaminase; Provisional
Probab=65.94 E-value=80 Score=26.52 Aligned_cols=105 Identities=17% Similarity=0.108 Sum_probs=54.1
Q ss_pred HHHHHHHHcCCCEEEecCCCC---CCCCCCCH------HHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHH
Q psy7930 20 ASALAAVRGGADRLELCAALS---EGGLTPTL------GLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQ 90 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~---~GGlTPS~------g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~ 90 (146)
..+..+.+.|..-+|+..+.. ..|+|..- ..++++.+..+|-+....-.-|. .+.++. .+.+..
T Consensus 85 ~~~~e~~~~Gvty~E~~~~p~~~~~~gl~~~~~~~a~~~~~~~a~~~~gi~~~li~~~~r~----~~~~~~---~~~~~~ 157 (340)
T PRK09358 85 EYLEDAAADGVVYAEIRFDPQLHTERGLPLEEVVEAVLDGLRAAEAEFGISVRLILCFMRH----FGEEAA---ARELEA 157 (340)
T ss_pred HHHHHHHHcCCEEEEEEeChhhhhhcCCCHHHHHHHHHHHHHHHHHhcCceEEEEEEecCC----CCHHHH---HHHHHH
Confidence 445668889999999885432 23665431 12233333334443332221021 223332 223333
Q ss_pred HHHc-CCCEEEEee-e-cCCCCcCHHHHHHHHHHhC--CCCeEEeec
Q psy7930 91 FVES-GADGFVIGA-L-TGEQEIDIEFIRQLKTIIG--DRPITFHRA 132 (146)
Q Consensus 91 ~~~~-GadG~VfG~-L-~~dg~iD~~~~~~Li~~a~--~~~vtFHRA 132 (146)
+.+. .-++ |+|+ | -++.....+.+++..+.|+ |+++|+|-+
T Consensus 158 ~~~~~~~~~-vvg~~l~g~e~~~~~~~~~~~~~~A~~~g~~~~~H~~ 203 (340)
T PRK09358 158 LAARYRDDG-VVGFDLAGDELGFPPSKFARAFDRARDAGLRLTAHAG 203 (340)
T ss_pred HHHHhcCCc-EEEEeCCCcCCCCCHHHHHHHHHHHHHCCCCeEEcCC
Confidence 3331 2234 3332 2 2333456678888888886 899999976
No 472
>PLN02303 urease
Probab=65.91 E-value=42 Score=33.11 Aligned_cols=72 Identities=15% Similarity=0.200 Sum_probs=46.3
Q ss_pred CCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC-
Q psy7930 46 PTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG- 123 (146)
Q Consensus 46 PS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~- 123 (146)
|+...++...+.. +.|+.+-+-- .+.. .+.+|+ ..+.+.|+.||-.- .+..++.+.+.+.++.|+
T Consensus 442 ~g~e~I~~~L~aa~~~pvn~Gf~g-kG~~--s~l~eL-------~elieaGa~GfK~h---~d~gvTpelL~raLe~Ake 508 (837)
T PLN02303 442 PAPSHMKLMLQSTDDLPLNFGFTG-KGNT--AKPEGL-------HEIIKAGAMGLKLH---EDWGTTPAAIDNCLDVAEE 508 (837)
T ss_pred CCHHHHHHHHHhcccCCCcEEEEc-cCcc--cCHHHH-------HHHHHcCcEEEEEC---CCCCCCHHHHHHHHHHHHH
Confidence 4566676665544 4566655544 2211 333333 34566798887633 456788999999999996
Q ss_pred -CCCeEEe
Q psy7930 124 -DRPITFH 130 (146)
Q Consensus 124 -~~~vtFH 130 (146)
+.++.+|
T Consensus 509 lGVpVaIH 516 (837)
T PLN02303 509 YDIQVTIH 516 (837)
T ss_pred cCCEEEEe
Confidence 7788888
No 473
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=65.61 E-value=75 Score=27.47 Aligned_cols=85 Identities=14% Similarity=0.118 Sum_probs=52.5
Q ss_pred CCCCCCCCCCCH---HH----HHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeecCC
Q psy7930 37 AALSEGGLTPTL---GL----YRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGE 107 (146)
Q Consensus 37 ~~l~~GGlTPS~---g~----i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~d 107 (146)
..+..||=|||. .. ++.+++.. ...+.+-.+| .++ ++ +.++.++++|+..|-+|+-+-+
T Consensus 58 ~tiy~GGGTPs~L~~~~l~~ll~~i~~~~~~~~eitiE~nP---~~l--t~-------e~l~~lk~~G~nrisiGvQS~~ 125 (353)
T PRK05904 58 KTIYLGGGTPNCLNDQLLDILLSTIKPYVDNNCEFTIECNP---ELI--TQ-------SQINLLKKNKVNRISLGVQSMN 125 (353)
T ss_pred EEEEECCCccccCCHHHHHHHHHHHHHhcCCCCeEEEEecc---CcC--CH-------HHHHHHHHcCCCEEEEecccCC
Confidence 456889999984 43 44444443 2346666777 222 33 5567778899999999987765
Q ss_pred C--------CcCHHHHHHHHHHhC--CCC-eEEeecc
Q psy7930 108 Q--------EIDIEFIRQLKTIIG--DRP-ITFHRAF 133 (146)
Q Consensus 108 g--------~iD~~~~~~Li~~a~--~~~-vtFHRAF 133 (146)
- .-+.+...+.++.++ |+. +.+.--|
T Consensus 126 d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~ 162 (353)
T PRK05904 126 NNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLY 162 (353)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEee
Confidence 2 345666666666665 333 5444433
No 474
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=65.37 E-value=2.1 Score=34.21 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEEe
Q psy7930 82 EIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFH 130 (146)
Q Consensus 82 ~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtFH 130 (146)
.-+..|++.+|+.|+..||. |-++++++.-.+..|.++++...++.|
T Consensus 58 RdL~~DL~~Lk~~G~~~Vvt--l~~~~EL~~l~Vp~L~~~~~~~Gi~~~ 104 (168)
T PF05706_consen 58 RDLQADLERLKDWGAQDVVT--LLTDHELARLGVPDLGEAAQARGIAWH 104 (168)
T ss_dssp B-HHHHHHHHHHTT--EEEE---S-HHHHHHTT-TTHHHHHHHTT-EEE
T ss_pred chHHHHHHHHHHCCCCEEEE--eCcHHHHHHcCCccHHHHHHHcCCEEE
Confidence 45788999999999999887 566778877777777777764334444
No 475
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=65.24 E-value=21 Score=30.74 Aligned_cols=71 Identities=30% Similarity=0.416 Sum_probs=49.3
Q ss_pred HHHHHHHHHcCCCEEEecCCC-CCCCCCC-CHHHHHHHHhhCC-CcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930 19 VASALAAVRGGADRLELCAAL-SEGGLTP-TLGLYRVIKRLVL-VPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG 95 (146)
Q Consensus 19 ~~~a~~A~~~GAdRIELc~~l-~~GGlTP-S~g~i~~~~~~~~-ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G 95 (146)
.+=+..++++|++-+-+=..- .+++.-| .+..|+++++.++ +||.. -|+ +.|.++...| +...|
T Consensus 155 ~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~-----NGd--I~s~~~a~~~------l~~tg 221 (323)
T COG0042 155 LEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIA-----NGD--IKSLEDAKEM------LEYTG 221 (323)
T ss_pred HHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEe-----CCC--cCCHHHHHHH------HHhhC
Confidence 456788999999998886643 3455554 7899999999887 77632 233 4445444443 44568
Q ss_pred CCEEEEe
Q psy7930 96 ADGFVIG 102 (146)
Q Consensus 96 adG~VfG 102 (146)
+|||.+|
T Consensus 222 ~DgVMig 228 (323)
T COG0042 222 ADGVMIG 228 (323)
T ss_pred CCEEEEc
Confidence 9999998
No 476
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=65.22 E-value=51 Score=27.22 Aligned_cols=86 Identities=21% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCEEEec--CCCCCCCCCCCHHHHHHHHhhCCCc--EEEEEcc---------CCCCCcccCHHH--HHHH
Q psy7930 20 ASALAAVRGGADRLELC--AALSEGGLTPTLGLYRVIKRLVLVP--VFVMIRV---------RAGFDFVFSQAE--KEIM 84 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc--~~l~~GGlTPS~g~i~~~~~~~~ip--v~vMIRP---------~R~gdF~Ys~~E--~~~M 84 (146)
+++....+ |+|.+-+= ++--+--+|=+..+++.+++..++| ||.|+.. .-|.|+..=..| ....
T Consensus 19 ~el~~l~~-g~d~lH~DiMDG~FVPN~tfg~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~aGad~it~H~Ea~~~~~ 97 (229)
T PRK09722 19 EQIEFLNS-KADYFHIDIMDGHFVPNLTLSPFFVSQVKKLASKPLDVHLMVTDPQDYIDQLADAGADFITLHPETINGQA 97 (229)
T ss_pred HHHHHHHh-CCCEEEEecccCccCCCcccCHHHHHHHHhcCCCCeEEEEEecCHHHHHHHHHHcCCCEEEECccCCcchH
Q ss_pred HHHHHHHHHcCCC-EEEEeeecC
Q psy7930 85 ALDCHQFVESGAD-GFVIGALTG 106 (146)
Q Consensus 85 ~~dI~~~~~~Gad-G~VfG~L~~ 106 (146)
.+-|+.+|++|+. |+++..-|+
T Consensus 98 ~~~i~~Ik~~G~kaGlalnP~T~ 120 (229)
T PRK09722 98 FRLIDEIRRAGMKVGLVLNPETP 120 (229)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC
No 477
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=65.04 E-value=67 Score=28.28 Aligned_cols=102 Identities=21% Similarity=0.121 Sum_probs=65.0
Q ss_pred HHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhh-------CCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHH
Q psy7930 21 SALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRL-------VLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVE 93 (146)
Q Consensus 21 ~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~-------~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~ 93 (146)
-+.....+|.|-|---.++...-..|-..=++.+.+. ++-.+..+..- .+ +.+.|++-.+.+++
T Consensus 146 ~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~Ni--ta-------~~~em~~ra~~a~~ 216 (364)
T cd08210 146 LAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAPNV--TG-------PPTQLLERARFAKE 216 (364)
T ss_pred HHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEEec--CC-------CHHHHHHHHHHHHH
Confidence 3556677899999555556666777765544444332 22223223332 12 24588999999999
Q ss_pred cCCCEEEEeeecCCCCcCHHHHHHHHHHhCC-CCeEEeecccCC
Q psy7930 94 SGADGFVIGALTGEQEIDIEFIRQLKTIIGD-RPITFHRAFDVV 136 (146)
Q Consensus 94 ~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~-~~vtFHRAFD~~ 136 (146)
+|++++.+-.+.--. ..++.|.+. .+ +++-.|||+=-.
T Consensus 217 ~Ga~~vMv~~~~~G~----~~~~~l~~~-~~~l~i~aHra~~ga 255 (364)
T cd08210 217 AGAGGVLIAPGLTGL----DTFRELAED-FDFLPILAHPAFAGA 255 (364)
T ss_pred cCCCEEEeecccchH----HHHHHHHhc-CCCcEEEEccccccc
Confidence 999999988776432 256666553 35 899999988543
No 478
>smart00642 Aamy Alpha-amylase domain.
Probab=64.97 E-value=36 Score=26.33 Aligned_cols=58 Identities=7% Similarity=0.102 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeeecCCCC---------------c-----CHHHHHHHHHHhC--CCCeEEeecccCCCC
Q psy7930 81 KEIMALDCHQFVESGADGFVIGALTGEQE---------------I-----DIEFIRQLKTIIG--DRPITFHRAFDVVRE 138 (146)
Q Consensus 81 ~~~M~~dI~~~~~~GadG~VfG~L~~dg~---------------i-----D~~~~~~Li~~a~--~~~vtFHRAFD~~~d 138 (146)
++-+.+-+..++++|+++|-+..+.+... + +.+.+++|+++|+ ++.|.+--.|.++.+
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 56666777799999999999888755442 3 3478999999997 788887666666543
No 479
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=64.75 E-value=30 Score=28.25 Aligned_cols=90 Identities=16% Similarity=0.208 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCCEEEecCCCCCCCCCCCHH---HHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930 19 VASALAAVRGGADRLELCAALSEGGLTPTLG---LYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG 95 (146)
Q Consensus 19 ~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g---~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G 95 (146)
.+-+..|++.|||-+-+..-...- .|+ -+ .++.+.+..++||.+-=.| -..++.++.+.+..+.+
T Consensus 82 i~~a~~a~~~Gad~v~v~pP~y~~-~~~-~~~~~~~~~ia~~~~~pi~iYn~P-~~tg~~l~~~~~~~L~~--------- 149 (281)
T cd00408 82 IELARHAEEAGADGVLVVPPYYNK-PSQ-EGIVAHFKAVADASDLPVILYNIP-GRTGVDLSPETIARLAE--------- 149 (281)
T ss_pred HHHHHHHHHcCCCEEEECCCcCCC-CCH-HHHHHHHHHHHhcCCCCEEEEECc-cccCCCCCHHHHHHHhc---------
Confidence 355667899999999997643222 222 33 3444555678999888889 54558888887776542
Q ss_pred CCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930 96 ADGFVIGALTGEQEIDIEFIRQLKTIIG 123 (146)
Q Consensus 96 adG~VfG~L~~dg~iD~~~~~~Li~~a~ 123 (146)
..-|.|+ + +..-|...+.+++...+
T Consensus 150 -~~~v~gi-K-~s~~d~~~~~~~~~~~~ 174 (281)
T cd00408 150 -HPNIVGI-K-DSSGDLDRLTRLIALLG 174 (281)
T ss_pred -CCCEEEE-E-eCCCCHHHHHHHHHhcC
Confidence 1244554 2 22357777777776653
No 480
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=64.64 E-value=14 Score=29.23 Aligned_cols=65 Identities=14% Similarity=0.119 Sum_probs=43.1
Q ss_pred HHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHH
Q psy7930 24 AAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQF 91 (146)
Q Consensus 24 ~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~ 91 (146)
.|++.+++-|-|-=| +-||+.-+...|-...+..++||.+.+.| +| +...|..=+-.|-.|...+
T Consensus 24 ~A~~~~~~~i~l~in-SPGG~v~~~~~I~~~i~~~~~pvv~~v~p-~g-~~AaSag~~I~~a~~~i~m 88 (172)
T cd07015 24 IAEQDNAEAIIIELD-TPGGRADAAGNIVQRIQQSKIPVIIYVYP-PG-ASAASAGTYIALGSHLIAM 88 (172)
T ss_pred HHhcCCCCeEEEEEE-CCCCCHHHHHHHHHHHHhcCcCEEEEEec-CC-CeehhHHHHHHHhcCceEE
Confidence 366667765544433 34776555444444455678999999999 54 4888888887777777433
No 481
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=64.62 E-value=85 Score=26.37 Aligned_cols=85 Identities=12% Similarity=-0.011 Sum_probs=52.7
Q ss_pred HHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930 22 ALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG 98 (146)
Q Consensus 22 a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG 98 (146)
+..+.+.|+++|-||+. .|-+||. +.+++.+++.. ++|+.+..-. .-| .=..-...+.++|++-
T Consensus 153 ~~~~~~~G~~~i~l~DT--~G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hn-d~G----------la~AN~laA~~aGa~~ 219 (280)
T cd07945 153 VDFLSDLPIKRIMLPDT--LGILSPFETYTYISDMVKRYPNLHFDFHAHN-DYD----------LAVANVLAAVKAGIKG 219 (280)
T ss_pred HHHHHHcCCCEEEecCC--CCCCCHHHHHHHHHHHHhhCCCCeEEEEeCC-CCC----------HHHHHHHHHHHhCCCE
Confidence 55678889999999994 7999995 66777777755 4676655444 222 2224455667788864
Q ss_pred E---EEeeecCCCCcCHHHHHHHH
Q psy7930 99 F---VIGALTGEQEIDIEFIRQLK 119 (146)
Q Consensus 99 ~---VfG~L~~dg~iD~~~~~~Li 119 (146)
| +.|.=..-|..+.+.+-..+
T Consensus 220 vd~s~~GlGe~aGN~~~E~~v~~L 243 (280)
T cd07945 220 LHTTVNGLGERAGNAPLASVIAVL 243 (280)
T ss_pred EEEecccccccccCccHHHHHHHH
Confidence 3 33322334455555544444
No 482
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=64.46 E-value=27 Score=26.54 Aligned_cols=78 Identities=15% Similarity=0.118 Sum_probs=48.7
Q ss_pred eeEEEecCHHHHHHHHHcCC--CEEEecCCC----------CCCCCCCC---HHHHHHHHhh-----CCCcEEEEEccCC
Q psy7930 11 TLEVCVDSVASALAAVRGGA--DRLELCAAL----------SEGGLTPT---LGLYRVIKRL-----VLVPVFVMIRVRA 70 (146)
Q Consensus 11 ~lEvcv~s~~~a~~A~~~GA--dRIELc~~l----------~~GGlTPS---~g~i~~~~~~-----~~ipv~vMIRP~R 70 (146)
...+++.|.+++..+.+.|. ++|=++... ..|+.++. ...++.+.+. ..++|++.|.| .
T Consensus 38 ~~~~~v~s~~E~~~~~~~g~~~~~I~~~~~~~~~~~l~~~~~~~~~~~~ids~~~l~~l~~~~~~~~~~~~v~lrv~~-g 116 (211)
T cd06808 38 GTGFDVASLGEALLLRAAGIPPEPILFLGPCKQVSELEDAAEQGVIVVTVDSLEELEKLEEAALKAGPPARVLLRIDT-G 116 (211)
T ss_pred CCcEEEcCHHHHHHHHHcCCCHHHEEEcCCCCCHHHHHHHHHcCCCEEEeCCHHHHHHHHHHHHHhCCCceEEEEEcC-C
Confidence 45789999999999999997 677777533 22567763 4444443322 23566777767 4
Q ss_pred --CCCcccCHHHHHHHHHHHH
Q psy7930 71 --GFDFVFSQAEKEIMALDCH 89 (146)
Q Consensus 71 --~gdF~Ys~~E~~~M~~dI~ 89 (146)
.+-|=.+.+|+....+.+.
T Consensus 117 ~~~~R~G~~~~e~~~~~~~i~ 137 (211)
T cd06808 117 DENGKFGVRPEELKALLERAK 137 (211)
T ss_pred CCCCCCCCCHHHHHHHHHHHH
Confidence 4455556666655544443
No 483
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=64.27 E-value=91 Score=26.60 Aligned_cols=86 Identities=20% Similarity=0.195 Sum_probs=61.3
Q ss_pred ccceeEEEecCHHHHHHHHHcCCCEEEecC-------CCCCCCCCCCHHHHHHHH---hhCCCcEEEEEccCCCCCcccC
Q psy7930 8 NKTTLEVCVDSVASALAAVRGGADRLELCA-------ALSEGGLTPTLGLYRVIK---RLVLVPVFVMIRVRAGFDFVFS 77 (146)
Q Consensus 8 ~~~~lEvcv~s~~~a~~A~~~GAdRIELc~-------~l~~GGlTPS~g~i~~~~---~~~~ipv~vMIRP~R~gdF~Ys 77 (146)
+.+++=.++.+.-||+.+++.|.+=|=+-+ .+.-+|+.|--.++..++ +.+++||.+=+-- | |.
T Consensus 12 ~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d~---G---yG 85 (285)
T TIGR02317 12 EDILQIPGAINAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTDLPLLVDADT---G---FG 85 (285)
T ss_pred CCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCC---C---CC
Confidence 346677788999999999999999887765 334456666555555554 4568998665544 2 33
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEE
Q psy7930 78 QAEKEIMALDCHQFVESGADGFVI 101 (146)
Q Consensus 78 ~~E~~~M~~dI~~~~~~GadG~Vf 101 (146)
+ .....+-++.+.++|+.|+-+
T Consensus 86 ~--~~~v~~tv~~~~~aG~agi~I 107 (285)
T TIGR02317 86 E--AFNVARTVREMEDAGAAAVHI 107 (285)
T ss_pred C--HHHHHHHHHHHHHcCCeEEEE
Confidence 3 344457899999999999987
No 484
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=64.21 E-value=82 Score=26.03 Aligned_cols=87 Identities=25% Similarity=0.290 Sum_probs=59.0
Q ss_pred cceeEEEecCHHHHHHHHHcCCCEEEecC-------CCCCCCCCCCHHHHHHHH---hhCCCcEEEEEccCCCCCcccCH
Q psy7930 9 KTTLEVCVDSVASALAAVRGGADRLELCA-------ALSEGGLTPTLGLYRVIK---RLVLVPVFVMIRVRAGFDFVFSQ 78 (146)
Q Consensus 9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~-------~l~~GGlTPS~g~i~~~~---~~~~ipv~vMIRP~R~gdF~Ys~ 78 (146)
++++=-++.+.-||+.+++.|.+=+=+-+ ++.-+|+.|--.++..++ +.+++||.|=+.- -.|+
T Consensus 9 ~~l~~p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~~iPv~vD~d~-GyG~----- 82 (238)
T PF13714_consen 9 KPLVLPNVWDALSARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAVSIPVIVDADT-GYGN----- 82 (238)
T ss_dssp SSEEEEEESSHHHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHSSSEEEEE-TT-TSSS-----
T ss_pred CcEEeCCCcCHHHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhcCcEEEEccc-ccCc-----
Confidence 56777899999999999999999887653 445556666555555444 5679999876665 2232
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930 79 AEKEIMALDCHQFVESGADGFVIG 102 (146)
Q Consensus 79 ~E~~~M~~dI~~~~~~GadG~VfG 102 (146)
+.....+-++.+.++|+.|+.+=
T Consensus 83 -~~~~v~~tv~~~~~aG~agi~IE 105 (238)
T PF13714_consen 83 -DPENVARTVRELERAGAAGINIE 105 (238)
T ss_dssp -SHHHHHHHHHHHHHCT-SEEEEE
T ss_pred -hhHHHHHHHHHHHHcCCcEEEee
Confidence 24455677899999999999874
No 485
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=63.93 E-value=35 Score=29.63 Aligned_cols=101 Identities=13% Similarity=0.185 Sum_probs=68.4
Q ss_pred EEecCHHHHHH----HHHcCCCEEEecCC--CCCCCCCCCHHHHHHHHhhCC-CcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930 14 VCVDSVASALA----AVRGGADRLELCAA--LSEGGLTPTLGLYRVIKRLVL-VPVFVMIRVRAGFDFVFSQAEKEIMAL 86 (146)
Q Consensus 14 vcv~s~~~a~~----A~~~GAdRIELc~~--l~~GGlTPS~g~i~~~~~~~~-ipv~vMIRP~R~gdF~Ys~~E~~~M~~ 86 (146)
+-+.|++.+.+ |++.++.=|=-++. +.-.|+.+-..+++...+... +||.+-+-- +.| .+
T Consensus 22 fN~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDH--g~~-----------~e 88 (307)
T PRK05835 22 FNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDH--GTT-----------FE 88 (307)
T ss_pred EEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEEECCC--CCC-----------HH
Confidence 44566666654 55556666655542 233456666677777777775 999887765 555 34
Q ss_pred HHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCe
Q psy7930 87 DCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPI 127 (146)
Q Consensus 87 dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~v 127 (146)
+|..+.++|.+.|-|=.=.-+.+=+.+.++++++.|+...+
T Consensus 89 ~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv 129 (307)
T PRK05835 89 SCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGV 129 (307)
T ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 57788999999998865544555678889999999984433
No 486
>PRK12999 pyruvate carboxylase; Reviewed
Probab=63.83 E-value=56 Score=33.06 Aligned_cols=100 Identities=14% Similarity=0.064 Sum_probs=62.3
Q ss_pred HHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCc------ccCHHHHHHHHHHHHHHHHcC
Q psy7930 22 ALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDF------VFSQAEKEIMALDCHQFVESG 95 (146)
Q Consensus 22 a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF------~Ys~~E~~~M~~dI~~~~~~G 95 (146)
+..|.++|.|.+-+..+|.. +.--.-.++.+++ .+.-..++|.. -||. .|+.+-+.. =++.+.++|
T Consensus 633 i~~a~~~Gid~~rifd~lnd--~~~~~~~i~~vk~-~g~~~~~~i~y--tg~~~d~~~~~~~~~~~~~---~a~~l~~~G 704 (1146)
T PRK12999 633 VREAAAAGIDVFRIFDSLNW--VENMRVAIDAVRE-TGKIAEAAICY--TGDILDPARAKYDLDYYVD---LAKELEKAG 704 (1146)
T ss_pred HHHHHHcCCCEEEEeccCCh--HHHHHHHHHHHHH-cCCeEEEEEEE--EecCCCCCCCCCCHHHHHH---HHHHHHHcC
Confidence 78899999999999986654 1111112233333 24444455544 2221 255554444 455567789
Q ss_pred CCEEEEeeecCCCCcCHHHHHHHHHHhC---CCCeEEee
Q psy7930 96 ADGFVIGALTGEQEIDIEFIRQLKTIIG---DRPITFHR 131 (146)
Q Consensus 96 adG~VfG~L~~dg~iD~~~~~~Li~~a~---~~~vtFHR 131 (146)
+|.+.| =+--|.+...++.+|+.+.+ ++++-||-
T Consensus 705 a~~i~i--kDt~G~l~P~~~~~lv~~lk~~~~ipi~~H~ 741 (1146)
T PRK12999 705 AHILAI--KDMAGLLKPAAAYELVSALKEEVDLPIHLHT 741 (1146)
T ss_pred CCEEEE--CCccCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 996654 46678888889999988876 57888883
No 487
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=63.69 E-value=12 Score=32.17 Aligned_cols=69 Identities=22% Similarity=0.228 Sum_probs=45.0
Q ss_pred HHHHHHHHcCCCEEEecCCC-------------CCCCCCC------CHHHHHHHHhhC--CCcEEEEEccCCCCCcccCH
Q psy7930 20 ASALAAVRGGADRLELCAAL-------------SEGGLTP------TLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQ 78 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l-------------~~GGlTP------S~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~ 78 (146)
+=+..++++|||-|.+.... ..||++- +...++++++.+ ++||.. -|| +.|.
T Consensus 229 ~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig-----~GG--I~s~ 301 (344)
T PRK05286 229 DIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIG-----VGG--IDSA 301 (344)
T ss_pred HHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEE-----ECC--CCCH
Confidence 44566788999999998743 2466652 345777888877 688754 266 3344
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930 79 AEKEIMALDCHQFVESGADGFVIG 102 (146)
Q Consensus 79 ~E~~~M~~dI~~~~~~GadG~VfG 102 (146)
+ |+..+..+|||.|-+|
T Consensus 302 e-------da~e~l~aGAd~V~v~ 318 (344)
T PRK05286 302 E-------DAYEKIRAGASLVQIY 318 (344)
T ss_pred H-------HHHHHHHcCCCHHHHH
Confidence 3 4444445788877665
No 488
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=63.52 E-value=12 Score=30.37 Aligned_cols=73 Identities=19% Similarity=0.177 Sum_probs=36.8
Q ss_pred CCCCCCHHHHHHHHhhCCC---cEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEee-ecCCCCcCHHHHHH
Q psy7930 42 GGLTPTLGLYRVIKRLVLV---PVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGA-LTGEQEIDIEFIRQ 117 (146)
Q Consensus 42 GGlTPS~g~i~~~~~~~~i---pv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~-L~~dg~iD~~~~~~ 117 (146)
.|...|+...+.+++..+- -|..=||| .||.= ++.+ .. ..+..+.+.|+|++|+|= +++.... .++.++
T Consensus 150 dgvv~~~~~~~~ir~~~~~~~~~v~pGI~~-~g~~~--~dq~-~~--~~~~~ai~~Gad~iVvGR~I~~a~dP-~~~a~~ 222 (230)
T PRK00230 150 DGVVCSAQEAAAIREATGPDFLLVTPGIRP-AGSDA--GDQK-RV--MTPAQAIAAGSDYIVVGRPITQAADP-AAAYEA 222 (230)
T ss_pred eEEEeChHHHHHHHhhcCCceEEEcCCcCC-CCCCc--chHH-HH--hCHHHHHHcCCCEEEECCcccCCCCH-HHHHHH
Confidence 3444444455666665431 11223577 55532 2222 22 256667789999999993 2222111 445555
Q ss_pred HHHH
Q psy7930 118 LKTI 121 (146)
Q Consensus 118 Li~~ 121 (146)
+.+.
T Consensus 223 i~~~ 226 (230)
T PRK00230 223 ILAE 226 (230)
T ss_pred HHHH
Confidence 5443
No 489
>PRK06846 putative deaminase; Validated
Probab=63.46 E-value=73 Score=27.56 Aligned_cols=94 Identities=17% Similarity=0.121 Sum_probs=53.5
Q ss_pred HHHHHHHHcCCCEEEecCCCCCCCCCCC------HHHHHHHH---hhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHH
Q psy7930 20 ASALAAVRGGADRLELCAALSEGGLTPT------LGLYRVIK---RLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQ 90 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS------~g~i~~~~---~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~ 90 (146)
+-+..|.+.||+ +. ||+.|. ...++.+. +..++|+++-++- ... +....+++-++.
T Consensus 179 ~lL~~al~~Ga~---~i-----~gl~p~~~~~~~~~~l~~~~~lA~~~g~~v~~Hv~e-~~~------~~~~~~~~~~~~ 243 (410)
T PRK06846 179 PLMREAMKMGAH---LV-----GGVDPASVDGAIEKSLDTMFQIAVDFNKGVDIHLHD-TGP------LGVATIKYLVET 243 (410)
T ss_pred HHHHHHHHcCCC---EE-----eCCCCccCCcCHHHHHHHHHHHHHHhCCCcEEEECC-CCC------hhHHHHHHHHHH
Confidence 446778888888 33 455443 23344443 3458999999985 221 122233445777
Q ss_pred HHHcCCCE-EEEeeecCCCCcCHHHHHHHHHHhC--CCCeE
Q psy7930 91 FVESGADG-FVIGALTGEQEIDIEFIRQLKTIIG--DRPIT 128 (146)
Q Consensus 91 ~~~~GadG-~VfG~L~~dg~iD~~~~~~Li~~a~--~~~vt 128 (146)
+.++|..| +.++=.+.-+.+|.+.+.++++... +..++
T Consensus 244 ~~~~gl~~~v~~~H~~~l~~~~~~e~~~li~~la~~g~~v~ 284 (410)
T PRK06846 244 TEEAQWKGKVTISHAFALGDLNEEEVEELAERLAAQGISIT 284 (410)
T ss_pred HHHhCCCCCEEEEecchhhcCCHHHHHHHHHHHHHcCCeEE
Confidence 78887644 4444444445567777776544433 44443
No 490
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=63.34 E-value=54 Score=29.00 Aligned_cols=69 Identities=22% Similarity=0.380 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcC-----HHHHHHH
Q psy7930 44 LTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEID-----IEFIRQL 118 (146)
Q Consensus 44 lTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD-----~~~~~~L 118 (146)
-..+...++.+++..+.||.+ - | + +-.+|.+.+.++|+|||+++- ..-.++| .+.+.++
T Consensus 221 ~~~~w~~i~~ir~~~~~pvii--K----g--V-------~~~eda~~a~~~G~d~I~VSn-hGGrqld~~~~~~~~L~ei 284 (361)
T cd04736 221 ASFNWQDLRWLRDLWPHKLLV--K----G--I-------VTAEDAKRCIELGADGVILSN-HGGRQLDDAIAPIEALAEI 284 (361)
T ss_pred CcCCHHHHHHHHHhCCCCEEE--e----c--C-------CCHHHHHHHHHCCcCEEEECC-CCcCCCcCCccHHHHHHHH
Confidence 345677899999988887643 1 2 1 223688999999999999862 2222455 5566666
Q ss_pred HHHhCCCCeEE
Q psy7930 119 KTIIGDRPITF 129 (146)
Q Consensus 119 i~~a~~~~vtF 129 (146)
.++. ++++.+
T Consensus 285 ~~~~-~~~vi~ 294 (361)
T cd04736 285 VAAT-YKPVLI 294 (361)
T ss_pred HHHh-CCeEEE
Confidence 5554 355443
No 491
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=63.26 E-value=41 Score=28.57 Aligned_cols=104 Identities=18% Similarity=0.240 Sum_probs=64.8
Q ss_pred cCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhh------CCCcEEEEEccCCCCCc--------ccC-HHHH
Q psy7930 17 DSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRL------VLVPVFVMIRVRAGFDF--------VFS-QAEK 81 (146)
Q Consensus 17 ~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~------~~ipv~vMIRP~R~gdF--------~Ys-~~E~ 81 (146)
.+++.+..|.+.|.+-|=+= |-.-|=-.=++..++. .+++|-.=|=- -+|.- .|| ++|.
T Consensus 80 ~~~~~i~~ai~~GftSVMiD-----~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~-i~g~e~~~~~~~~~~T~pe~a 153 (276)
T cd00947 80 SSFELIKRAIRAGFSSVMID-----GSHLPFEENVAKTKEVVELAHAYGVSVEAELGR-IGGEEDGVVGDEGLLTDPEEA 153 (276)
T ss_pred CCHHHHHHHHHhCCCEEEeC-----CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEee-ecCccCCcccccccCCCHHHH
Confidence 47899999999996555432 3334544444444442 36777666643 22221 243 3222
Q ss_pred HHHHHHHHHHHHcCCCEEEEeeecCC-------CCcCHHHHHHHHHHhCCCCeEEeecc
Q psy7930 82 EIMALDCHQFVESGADGFVIGALTGE-------QEIDIEFIRQLKTIIGDRPITFHRAF 133 (146)
Q Consensus 82 ~~M~~dI~~~~~~GadG~VfG~L~~d-------g~iD~~~~~~Li~~a~~~~vtFHRAF 133 (146)
+ +.+++.|+|-+.+.+=|-. -.||.++++++-+.. +.|+++|=.=
T Consensus 154 ~------~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~-~vPLVlHGgS 205 (276)
T cd00947 154 E------EFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV-NVPLVLHGGS 205 (276)
T ss_pred H------HHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHh-CCCEEEeCCC
Confidence 2 2334579997776665543 369999999999988 7999999653
No 492
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=63.26 E-value=94 Score=26.43 Aligned_cols=104 Identities=17% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEe--------cCCCCCCCCCCC------HHHHHHHHhh-CCCcEEEEEccCCCCCcccCHHHHHH
Q psy7930 19 VASALAAVRGGADRLEL--------CAALSEGGLTPT------LGLYRVIKRL-VLVPVFVMIRVRAGFDFVFSQAEKEI 83 (146)
Q Consensus 19 ~~~a~~A~~~GAdRIEL--------c~~l~~GGlTPS------~g~i~~~~~~-~~ipv~vMIRP~R~gdF~Ys~~E~~~ 83 (146)
..-+...++.|+.=|-+ |+.+...|..+. ..-++.+++. .+.++.++-|- |=......++.
T Consensus 95 ~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiART----Da~~~~~~~~e 170 (285)
T TIGR02320 95 RRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARV----ESLILGKGMED 170 (285)
T ss_pred HHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEec----ccccccCCHHH
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC----CCCeEEe
Q psy7930 84 MALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG----DRPITFH 130 (146)
Q Consensus 84 M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~----~~~vtFH 130 (146)
-.+=.+.++++|||++.+ +-+.-|.+.++++.+..+ +.|+.+.
T Consensus 171 Ai~Ra~ay~eAGAD~ifv----~~~~~~~~ei~~~~~~~~~~~p~~pl~~~ 217 (285)
T TIGR02320 171 ALKRAEAYAEAGADGIMI----HSRKKDPDEILEFARRFRNHYPRTPLVIV 217 (285)
T ss_pred HHHHHHHHHHcCCCEEEe----cCCCCCHHHHHHHHHHhhhhCCCCCEEEe
No 493
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=63.06 E-value=49 Score=26.61 Aligned_cols=49 Identities=20% Similarity=0.244 Sum_probs=32.2
Q ss_pred HHHHHHHHcCCCEEEec--CCCCCCCCCCCHHHHHHHHhhCCCc--EEEEEcc
Q psy7930 20 ASALAAVRGGADRLELC--AALSEGGLTPTLGLYRVIKRLVLVP--VFVMIRV 68 (146)
Q Consensus 20 ~~a~~A~~~GAdRIELc--~~l~~GGlTPS~g~i~~~~~~~~ip--v~vMIRP 68 (146)
+++....++|+|.+-+= ++--+--+|=+..+++++++..++| ||.|+..
T Consensus 16 ~~i~~l~~~g~d~lHiDiMDg~fvpn~~~g~~~i~~i~~~~~~~~DvHLMv~~ 68 (201)
T PF00834_consen 16 EEIKRLEEAGADWLHIDIMDGHFVPNLTFGPDIIKAIRKITDLPLDVHLMVEN 68 (201)
T ss_dssp HHHHHHHHTT-SEEEEEEEBSSSSSSB-B-HHHHHHHHTTSSSEEEEEEESSS
T ss_pred HHHHHHHHcCCCEEEEeecccccCCcccCCHHHHHHHhhcCCCcEEEEeeecc
Confidence 45667778899988653 3333334455688999999988665 8888863
No 494
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=63.04 E-value=75 Score=27.71 Aligned_cols=42 Identities=19% Similarity=0.228 Sum_probs=32.2
Q ss_pred CCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930 46 PTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIG 102 (146)
Q Consensus 46 PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG 102 (146)
++...++.+++..++||.|= - -+ + .+|++.+.++|+|+|++.
T Consensus 200 ~~~~~i~~l~~~~~~PvivK--g--v~----~-------~~dA~~a~~~G~d~I~vs 241 (344)
T cd02922 200 LTWDDIKWLRKHTKLPIVLK--G--VQ----T-------VEDAVLAAEYGVDGIVLS 241 (344)
T ss_pred CCHHHHHHHHHhcCCcEEEE--c--CC----C-------HHHHHHHHHcCCCEEEEE
Confidence 56778888888888887542 2 11 1 578899999999999987
No 495
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=63.03 E-value=37 Score=27.65 Aligned_cols=70 Identities=9% Similarity=0.055 Sum_probs=48.6
Q ss_pred EecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930 15 CVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES 94 (146)
Q Consensus 15 cv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~ 94 (146)
.+.|+.++..|.+.||+.+-|-- .+.......++.++.-+. .+.+| | .||= + .+++..+.++
T Consensus 114 G~~TptEi~~a~~~Ga~~vKlFP----a~~~gg~~~lk~l~~p~p-~~~~~--p-tGGV---~-------~~ni~~~l~a 175 (212)
T PRK05718 114 GVSTPSELMLGMELGLRTFKFFP----AEASGGVKMLKALAGPFP-DVRFC--P-TGGI---S-------PANYRDYLAL 175 (212)
T ss_pred CCCCHHHHHHHHHCCCCEEEEcc----chhccCHHHHHHHhccCC-CCeEE--E-eCCC---C-------HHHHHHHHhC
Confidence 46788999999999999999943 222226778887776542 14445 8 7871 1 2688999999
Q ss_pred CCCEEEEe
Q psy7930 95 GADGFVIG 102 (146)
Q Consensus 95 GadG~VfG 102 (146)
|+-.+|.|
T Consensus 176 g~v~~vgg 183 (212)
T PRK05718 176 PNVLCIGG 183 (212)
T ss_pred CCEEEEEC
Confidence 95555554
No 496
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=63.01 E-value=12 Score=33.68 Aligned_cols=71 Identities=17% Similarity=0.152 Sum_probs=47.5
Q ss_pred eeEEEecCHHHHHHHHHcCCCEEEecCCC-CCCCCCC-----CHHHHHHHHhhCCCcEEEEEccCC------CCCcccCH
Q psy7930 11 TLEVCVDSVASALAAVRGGADRLELCAAL-SEGGLTP-----TLGLYRVIKRLVLVPVFVMIRVRA------GFDFVFSQ 78 (146)
Q Consensus 11 ~lEvcv~s~~~a~~A~~~GAdRIELc~~l-~~GGlTP-----S~g~i~~~~~~~~ipv~vMIRP~R------~gdF~Ys~ 78 (146)
-+|+-..+++.+..|.. |--.-..+ ..|--|| +........+..+.|+ +||| + |+.++||.
T Consensus 100 gV~vvgs~~eaI~iaeD----r~~fke~m~eigi~~P~~~~~~~~e~~~~~~~ig~Pv--IVrP-~~~lGG~G~~i~~n~ 172 (400)
T COG0458 100 GVEVVGSDPEAIEIAED----KKLFKEAMREIGIPVPSRIAHSVEEADEIADEIGYPV--IVKP-SFGLGGSGGGIAYNE 172 (400)
T ss_pred CCEEEecCHHHhhhhhh----HHHHHHHHHHcCCCCCccccccHHHHhhhHhhcCCCE--EEec-CcCCCCCceeEEeCH
Confidence 46667777776555543 21111112 3466678 7777777777778887 8899 5 46899999
Q ss_pred HHHHHHHHHH
Q psy7930 79 AEKEIMALDC 88 (146)
Q Consensus 79 ~E~~~M~~dI 88 (146)
+|+..+..--
T Consensus 173 eel~~~~~~~ 182 (400)
T COG0458 173 EELEEIIEEG 182 (400)
T ss_pred HHHHHHHHhc
Confidence 9999887653
No 497
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=62.83 E-value=13 Score=29.94 Aligned_cols=102 Identities=18% Similarity=0.174 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCCEEEecCCC---CCCCCCCCHHHHHHHHhhC---CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHH
Q psy7930 19 VASALAAVRGGADRLELCAAL---SEGGLTPTLGLYRVIKRLV---LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFV 92 (146)
Q Consensus 19 ~~~a~~A~~~GAdRIELc~~l---~~GGlTPS~g~i~~~~~~~---~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~ 92 (146)
..++..|.+.|||=|.+.-++ ..|-..--...++++++.+ ++|+.+..-| ++..+.= +.+-+.+..=.+.+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l-~~~~~~~-~~~~~~I~~a~ria~ 156 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYL-RGEEVAD-EKKPDLIARAARIAA 156 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECE-CHHHBSS-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEec-Cchhhcc-cccHHHHHHHHHHHH
Confidence 788999999999999999876 4444333344555555543 6777666444 3211100 004567778888889
Q ss_pred HcCCCEEEEeeecC--CCCcCHHHHHHHHHHh
Q psy7930 93 ESGADGFVIGALTG--EQEIDIEFIRQLKTII 122 (146)
Q Consensus 93 ~~GadG~VfG~L~~--dg~iD~~~~~~Li~~a 122 (146)
++|||=+=...=.. ...-|...++++++.+
T Consensus 157 e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~ 188 (236)
T PF01791_consen 157 ELGADFVKTSTGKPVGATPEDVELMRKAVEAA 188 (236)
T ss_dssp HTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTH
T ss_pred HhCCCEEEecCCccccccHHHHHHHHHHHHhc
Confidence 99999655432222 1124566666776644
No 498
>PRK15108 biotin synthase; Provisional
Probab=62.66 E-value=15 Score=31.75 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=13.4
Q ss_pred HHHHHHHcCCCEEEecCCCCCCCCCCC
Q psy7930 21 SALAAVRGGADRLELCAALSEGGLTPT 47 (146)
Q Consensus 21 ~a~~A~~~GAdRIELc~~l~~GGlTPS 47 (146)
.|..+.+.|++|+ | +..||.-|+
T Consensus 84 ~a~~~~~~G~~~i--~--i~~~g~~p~ 106 (345)
T PRK15108 84 SARKAKAAGSTRF--C--MGAAWKNPH 106 (345)
T ss_pred HHHHHHHcCCCEE--E--EEecCCCCC
Confidence 3445556799998 3 234555664
No 499
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=62.59 E-value=7.5 Score=31.72 Aligned_cols=17 Identities=41% Similarity=0.749 Sum_probs=14.7
Q ss_pred HHHHHHHHcCCCEEEEe
Q psy7930 86 LDCHQFVESGADGFVIG 102 (146)
Q Consensus 86 ~dI~~~~~~GadG~VfG 102 (146)
++++.+.+.||||||+|
T Consensus 198 e~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 198 EDARDALSAGADGVVVG 214 (244)
T ss_pred HHHHHHHHcCCCEEEEC
Confidence 56777788999999999
No 500
>PRK09234 fbiC FO synthase; Reviewed
Probab=62.42 E-value=39 Score=33.13 Aligned_cols=63 Identities=30% Similarity=0.335 Sum_probs=38.0
Q ss_pred HHHHHHHcCCCEEEecCCCCCCCCCCCHH------HHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHH--------HHH
Q psy7930 21 SALAAVRGGADRLELCAALSEGGLTPTLG------LYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKE--------IMA 85 (146)
Q Consensus 21 ~a~~A~~~GAdRIELc~~l~~GGlTPS~g------~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~--------~M~ 85 (146)
.+..|.+.|+.++-+. ||..|... +++.+++.. ++.|++ ||+.|+. -..
T Consensus 565 ~a~ea~~~G~tev~i~-----gG~~p~~~~~~y~~lir~IK~~~p~i~i~a-----------fsp~Ei~~~a~~~Gl~~~ 628 (843)
T PRK09234 565 RAWEAWVAGATEVCMQ-----GGIHPELPGTGYADLVRAVKARVPSMHVHA-----------FSPMEIVNGAARLGLSIR 628 (843)
T ss_pred HHHHHHHCCCCEEEEe-----cCCCCCcCHHHHHHHHHHHHHhCCCeeEEe-----------cChHHHHHHHHHcCCCHH
Confidence 4777889999999877 67888433 355555544 344443 3333333 112
Q ss_pred HHHHHHHHcCCCEE
Q psy7930 86 LDCHQFVESGADGF 99 (146)
Q Consensus 86 ~dI~~~~~~GadG~ 99 (146)
+-++.+|++|+|.+
T Consensus 629 e~l~~LkeAGLds~ 642 (843)
T PRK09234 629 EWLTALREAGLDTI 642 (843)
T ss_pred HHHHHHHHhCcCcc
Confidence 44567777777765
Done!