RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7930
(146 letters)
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif,
metal-binding site, polymorphism, metal binding protein;
2.50A {Homo sapiens}
Length = 287
Score = 141 bits (355), Expect = 2e-42
Identities = 70/134 (52%), Positives = 88/134 (65%), Gaps = 1/134 (0%)
Query: 8 NKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIR 67
N +EVCVDSV SA+ A RGGADR+ELC+ LSEGG TP++G+ +V+K+ V +PVFVMIR
Sbjct: 38 NGFLMEVCVDSVESAVNAERGGADRIELCSGLSEGGTTPSMGVLQVVKQSVQIPVFVMIR 97
Query: 68 VRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPI 127
R G F++S E E+M D GADG V GALT + ID E L I P+
Sbjct: 98 PRGGD-FLYSDREIEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCMSLMAICRPLPV 156
Query: 128 TFHRAFDVVREPNE 141
TFHRAFD+V +P
Sbjct: 157 TFHRAFDMVHDPMA 170
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural
genomics, PSI, protein structure initiative; 1.70A
{Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Length = 256
Score = 136 bits (342), Expect = 7e-41
Identities = 52/132 (39%), Positives = 74/132 (56%), Gaps = 1/132 (0%)
Query: 10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVR 69
LE+C S+ AL A + GADR+ELCAA EGGLTP+LG+ + +++ V +PV +IR R
Sbjct: 2 ALLEICCYSMECALTAQQNGADRVELCAAPKEGGLTPSLGVLKSVRQRVTIPVHPIIRPR 61
Query: 70 AGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITF 129
G DF +S E + D E G G V G L + +D+ + ++ G +TF
Sbjct: 62 GG-DFCYSDGEFAAILEDVRTVRELGFPGLVTGVLDVDGNVDMPRMEKIMAAAGPLAVTF 120
Query: 130 HRAFDVVREPNE 141
HRAFD+ P
Sbjct: 121 HRAFDMCANPLY 132
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural
genomics, PSI, protein structure initiative; 2.30A
{Streptococcus agalactiae}
Length = 224
Score = 131 bits (330), Expect = 2e-39
Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 4/132 (3%)
Query: 12 LEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL---VPVFVMIRV 68
E C +++ + R+ELC L+ GG TP+ G+ + + + + V VMIR
Sbjct: 4 REFCAENLTDLTRLDKAIISRVELCDNLAVGGTTPSYGVIKEANQYLHEKGISVAVMIRP 63
Query: 69 RAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPIT 128
R G +FV++ E IM D + VE +D V+G LT ID E I QL P+
Sbjct: 64 RGG-NFVYNDLELRIMEEDILRAVELESDALVLGILTSNNHIDTEAIEQLLPATQGLPLV 122
Query: 129 FHRAFDVVREPN 140
FH AFDV+ + +
Sbjct: 123 FHMAFDVIPKSD 134
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.002
Identities = 21/129 (16%), Positives = 35/129 (27%), Gaps = 48/129 (37%)
Query: 33 LELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFV 92
LE +EG +P M+ + + Q + + + H
Sbjct: 324 LEDSLENNEGVPSP------------------MLSIS---NLTQEQVQDYVNKTNSHLPA 362
Query: 93 ES--------GADGFVI-G---ALTG----------EQEIDIEFIRQLKTIIGDRPITFH 130
GA V+ G +L G +D Q + +R + F
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD-----QSRIPFSERKLKFS 417
Query: 131 RAFDVVREP 139
F V P
Sbjct: 418 NRFLPVASP 426
Score = 27.7 bits (61), Expect = 1.5
Identities = 15/108 (13%), Positives = 33/108 (30%), Gaps = 42/108 (38%)
Query: 21 SALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAE 80
+ALA++ AD + + + + +V R G
Sbjct: 1768 AALASL---ADVMSIESLV----------------EVV--------FYR-G------MTM 1793
Query: 81 KEIMALDCHQFVESGADGFVIGALTGEQ---EIDIEFIRQLKTIIGDR 125
+ + D E G + + A+ + E ++ + +G R
Sbjct: 1794 QVAVPRD-----ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR 1836
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel,
ribulose-phosphate binding barrel, carbohydrate
metabolic process; HET: BTB; 1.80A {Salmonella enterica
subsp}
Length = 229
Score = 29.6 bits (66), Expect = 0.31
Identities = 18/111 (16%), Positives = 35/111 (31%), Gaps = 15/111 (13%)
Query: 11 TLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRA 70
+V ++ + G + + + G +TP ++ +L V+
Sbjct: 131 LAMADCSTVNEGISCHQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHAGCRVI----- 185
Query: 71 GFDFVFSQAEKEIM-ALDCHQFVESGADGFVIG-ALTGEQEIDIEFIRQLK 119
AE +E GA +G A+T + I F +K
Sbjct: 186 --------AEGRYNTPALAANAIEHGAWAVTVGSAITRIEHICQWFSHAVK 228
>3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis
inhibition, bromopyruvate, amino-acid biosynthesis; HET:
FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A
3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A
Length = 644
Score = 29.8 bits (67), Expect = 0.33
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 19 VASALAAVRGGADRLELC 36
VA+A GADR+E C
Sbjct: 294 VAAAELGFAAGADRIEGC 311
>1ig0_A Thiamin pyrophosphokinase; protein-substrate complex, compound
active site, alpha-beta- alpha, beta sandwich,
transferase; HET: VIB; 1.80A {Saccharomyces cerevisiae}
SCOP: b.82.6.1 c.100.1.1
Length = 319
Score = 27.9 bits (61), Expect = 1.3
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 10/33 (30%)
Query: 1 EYLSILWNKTTLEVCVDSVASALAAVRGGADRL 33
+W L+VC D G A+RL
Sbjct: 53 PLFYKIWKLHDLKVCAD----------GAANRL 75
>3dwl_E Actin-related protein 2/3 complex subunit 3; propellor,
actin-binding, ATP-binding, cytoskeleton, nucleot
binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces
pombe}
Length = 174
Score = 27.1 bits (60), Expect = 1.5
Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 78 QAEKEIMALDCHQFVESGADGFVIGALT------GEQEIDIEFIRQLKTIIGDRPITFHR 131
AE+++ +L F G+ GF + AL + EI ++ Q + + R ++
Sbjct: 91 DAERQLNSLALENFSIPGSAGFPLNALYAPPLSPQDAEIMRTYLTQFRQELAYRLLS--H 148
Query: 132 AFDVVREPNEKRW 144
+ ++ K W
Sbjct: 149 VYATEKDHPSKWW 161
>1dys_A Endoglucanase, cellulase; hydrolase, cellulose degradation,
glycoside hydrolase family 6; 1.6A {Humicola insolens}
SCOP: c.6.1.1
Length = 348
Score = 27.5 bits (60), Expect = 1.6
Identities = 10/53 (18%), Positives = 13/53 (24%), Gaps = 6/53 (11%)
Query: 87 DCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHRAFDVVREP 139
DC SG L + + Q D V+ EP
Sbjct: 92 DCSAGESSGELKLSQNGLNRYKNEYVNPFAQKLKAASDVQFA------VILEP 138
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel,
substrate channeling; HET: NAD; 1.70A {Pseudomonas SP}
SCOP: a.5.7.1 c.1.10.5
Length = 345
Score = 27.3 bits (61), Expect = 2.3
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 18 SVASALAAVRGGADRLE 34
VA+++ AV G DR++
Sbjct: 208 GVANSIVAVEEGCDRVD 224
>3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer
9468A, muconate lactonizing enzyme, PSI-2, protein
structure initiative; 1.70A {Ruegeria pomeroyi} PDB:
3i6t_A
Length = 385
Score = 26.5 bits (59), Expect = 3.7
Identities = 6/82 (7%), Positives = 25/82 (30%), Gaps = 6/82 (7%)
Query: 60 VPVFVMI----RVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFI 115
+PV+ ++ R + + + + G + + DI +
Sbjct: 124 LPVWALLGGKCRDTIPLSCSIANPDFDADIALMERLRADGVGLIKLKTGFRDHAFDIMRL 183
Query: 116 RQLKTIIGDRPIT--FHRAFDV 135
+ + + +++ ++
Sbjct: 184 ELIARDFPEFRVRVDYNQGLEI 205
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel,
licmsn, substrate specificity, acyltransferase,
amino-acid biosynthesis; 2.00A {Leptospira interrogans}
PDB: 3blf_A 3bli_A*
Length = 337
Score = 26.3 bits (59), Expect = 3.9
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 18 SVASALAAVRGGADRLE 34
SVA++L A+R G L
Sbjct: 227 SVANSLQAIRAGVKGLH 243
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Length = 326
Score = 26.5 bits (59), Expect = 4.1
Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 6/53 (11%)
Query: 16 VDSVASALAAVRGGADRLELCAALSEG----GLTPTLGLYRVIKRLVLVPVFV 64
V S + A R GAD + A E G T L + R V +PV
Sbjct: 131 VASDSLARMVERAGAD--AVIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIA 181
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural
genomics consortium, transferase; HET: TPP; 1.80A {Homo
sapiens} PDB: 1ig3_A* 2f17_A*
Length = 247
Score = 25.9 bits (56), Expect = 4.7
Identities = 14/48 (29%), Positives = 15/48 (31%), Gaps = 10/48 (20%)
Query: 1 EYLSILWNKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTL 48
Y LWNK L C D GGA+RL P
Sbjct: 34 NYFRHLWNKALLRACAD----------GGANRLYDITEGERESFLPEF 71
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM
barrel, catalytic domain, dimer, leucine biosynthesis,
ketoisovalerate; 1.95A {Neisseria meningitidis}
Length = 370
Score = 26.0 bits (58), Expect = 4.9
Identities = 9/17 (52%), Positives = 16/17 (94%)
Query: 18 SVASALAAVRGGADRLE 34
+VA++LAA++GGA ++E
Sbjct: 218 AVANSLAALKGGARQVE 234
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural
genomics, protein structure initiative; 2.78A {Cytophaga
hutchinsonii atcc 33406}
Length = 325
Score = 25.9 bits (58), Expect = 4.9
Identities = 7/17 (41%), Positives = 14/17 (82%)
Query: 18 SVASALAAVRGGADRLE 34
+ A++LAA++ GA ++E
Sbjct: 212 ATANSLAALQNGARQVE 228
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics,
oxidoreductase, flavoprotein; HET: FMN; 1.70A
{Streptococcus pneumoniae} PDB: 2z6j_A*
Length = 332
Score = 26.1 bits (58), Expect = 5.2
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 16 VDSVASALAAVRGGADRLELCAALSEG----GLTPTLGLYRVIKRLVLVPVFV 64
V SVA A + GAD + A E G T+ L R + + +PV
Sbjct: 117 VPSVALAKRMEKIGAD--AVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIA 167
>3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site,
lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A*
Length = 445
Score = 26.2 bits (58), Expect = 5.2
Identities = 6/37 (16%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 101 IGALTGEQEIDIEFIRQLKTIIGDRPIT--FHRAFDV 135
G E+ ++ + L+ D P+ + A+
Sbjct: 217 GGVFAPEE--EMAAVEALRAAFPDHPLRLDPNAAWTP 251
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown
function, amino-acid biosynthesis; 2.10A {Listeria
monocytogenes str}
Length = 293
Score = 25.9 bits (58), Expect = 5.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 18 SVASALAAVRGGADRLE 34
+ A+ALAA+ GA R+E
Sbjct: 211 ATANALAAIENGARRVE 227
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex,
amino-acid BIOS lysine biosynthesis, transferase; HET:
AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A*
3a9i_A*
Length = 382
Score = 26.0 bits (58), Expect = 6.2
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 18 SVASALAAVRGGADRLE 34
++A+A A+ GA ++
Sbjct: 203 AIANAYEAIEAGATHVD 219
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism,
sugars, csgid, carbohydrate metabolism, isomerase; HET:
MSE 16G; 1.50A {Salmonella enterica subsp}
Length = 232
Score = 25.8 bits (56), Expect = 6.5
Identities = 23/112 (20%), Positives = 34/112 (30%), Gaps = 15/112 (13%)
Query: 10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVR 69
SV LA R GAD + + TP ++K L V+
Sbjct: 130 LLTMADCSSVDDGLACQRLGADIIGTTMSGYTTPDTPEEPDLPLVKALHDAGCRVI---- 185
Query: 70 AGFDFVFSQAEKEIM-ALDCHQFVESGADGFVIG-ALTGEQEIDIEFIRQLK 119
AE + + GA +G A+T + I + LK
Sbjct: 186 ---------AEGRYNSPALAAEAIRYGAWAVTVGSAITRLEHICGWYNDALK 228
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein,
transferase, claisen condensatio acid biosynthesis;
2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A*
3mi3_A*
Length = 423
Score = 25.7 bits (57), Expect = 6.6
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 18 SVASALAAVRGGADRLE 34
++A+A A+ GA ++
Sbjct: 237 AIANAYCALEAGATHID 253
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase,
2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A
{Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Length = 328
Score = 25.7 bits (57), Expect = 6.7
Identities = 13/55 (23%), Positives = 17/55 (30%), Gaps = 8/55 (14%)
Query: 16 VDSVASALAAVRGGADRLELCAALSEGG------LTPTLGLYRVIKRLVLVPVFV 64
+V AL A R G D + E P L L + VP+
Sbjct: 125 CTAVRHALKAERLGVD--AVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIA 177
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural
genomics, epimerase, PSI, structure initiative; 1.60A
{Streptococcus pyogenes} SCOP: c.1.2.5
Length = 234
Score = 25.3 bits (55), Expect = 8.5
Identities = 23/109 (21%), Positives = 35/109 (32%), Gaps = 20/109 (18%)
Query: 16 VDSVASALAAVRGGAD----RLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAG 71
+ + L A + G D L S P + L + + + V
Sbjct: 140 ISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCK-AGIAVIA------- 191
Query: 72 FDFVFSQAEKEIMALDCHQFVESGADGFVIG-ALTGEQEIDIEFIRQLK 119
+ E+ D G G V+G A+T +EI FI LK
Sbjct: 192 -EGKIHSPEEAKKINDL------GVAGIVVGGAITRPKEIAERFIEALK 233
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex,
pyruvate, lyase; HET: KPI; 1.80A {Azospirillum
brasilense} PDB: 3fkk_A
Length = 309
Score = 25.1 bits (55), Expect = 9.4
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 86 LDCHQFVESGADGFVIGALTGEQ 108
+D +++G+DG I A EQ
Sbjct: 35 VDFM--IDAGSDGLCILANFSEQ 55
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.141 0.418
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,384,258
Number of extensions: 144102
Number of successful extensions: 664
Number of sequences better than 10.0: 1
Number of HSP's gapped: 660
Number of HSP's successfully gapped: 47
Length of query: 146
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 61
Effective length of database: 4,328,508
Effective search space: 264038988
Effective search space used: 264038988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.2 bits)