RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7930
(146 letters)
>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella
flexneri [TaxId: 623]}
Length = 247
Score = 156 bits (396), Expect = 2e-49
Identities = 52/130 (40%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
Query: 12 LEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAG 71
LE+C S+ AL A + GADR+ELCAA EGGLTP+LG+ + +++ V +PV +IR R G
Sbjct: 3 LEICCYSMECALTAQQNGADRVELCAAPKEGGLTPSLGVLKSVRQRVTIPVHPIIRPRGG 62
Query: 72 FDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHR 131
DF +S E + D E G G V G L + +D+ + ++ G +TFHR
Sbjct: 63 -DFCYSDGEFAAILEDVRTVRELGFPGLVTGVLDVDGNVDMPRMEKIMAAAGPLAVTFHR 121
Query: 132 AFDVVREPNE 141
AFD+ P
Sbjct: 122 AFDMCANPLY 131
>d1ig0a2 c.100.1.1 (A:3-223) Thiamin pyrophosphokinase, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 221
Score = 27.7 bits (61), Expect = 0.47
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 10/33 (30%)
Query: 1 EYLSILWNKTTLEVCVDSVASALAAVRGGADRL 33
+W L+VC D G A+RL
Sbjct: 51 PLFYKIWKLHDLKVCAD----------GAANRL 73
>d1k8ke_ a.148.1.1 (E:) Arp2/3 complex 21 kDa subunit ARPC3 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 174
Score = 27.0 bits (60), Expect = 0.75
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 77 SQAEKEIMALDCHQFVESGADGFVIGAL----TGEQEIDI--EFIRQLKTIIGDRPITFH 130
SQ EKE+ L F G GF + A+ +QE ++ +++QL+ G R
Sbjct: 88 SQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLRQETGLRLCE-- 145
Query: 131 RAFDVVREPNEKRW 144
+ FD + K W
Sbjct: 146 KVFDPQNDKPSKWW 159
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
Length = 222
Score = 27.1 bits (59), Expect = 0.83
Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 9/115 (7%)
Query: 6 LWNKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVM 65
+ + +V A A R G D + L + L V V
Sbjct: 116 HAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVD 175
Query: 66 IRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIG-ALTGEQEIDIEFIRQLK 119
+V A + + + ++ G V+G A+T +EI F++ ++
Sbjct: 176 AKVIAEGNVITPD--------MYKRVMDLGVHCSVVGGAITRPKEITKRFVQVME 222
>d1rhca_ c.1.16.3 (A:) Coenzyme F420 dependent secondary alcohol
dehydrogenase {Archaeon Methanoculleus thermophilicus
[TaxId: 2200]}
Length = 330
Score = 27.0 bits (58), Expect = 0.87
Identities = 6/29 (20%), Positives = 16/29 (55%)
Query: 90 QFVESGADGFVIGALTGEQEIDIEFIRQL 118
+F E+G + F +G + + I+ +++
Sbjct: 296 RFKEAGINHFCLGNSSPDVNFGIDIFKEV 324
>d1ig3a2 c.100.1.1 (A:10-178) Thiamin pyrophosphokinase, catalytic
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 26.8 bits (59), Expect = 0.92
Identities = 11/48 (22%), Positives = 12/48 (25%), Gaps = 10/48 (20%)
Query: 1 EYLSILWNKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTL 48
LW K L C D GGA+ L P
Sbjct: 41 ARFRHLWKKALLRACAD----------GGANHLYDLTEGERESFLPEF 78
>d2choa2 c.1.8.10 (A:127-436) Glucosaminidase GH84, catalytic domain
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 310
Score = 26.4 bits (58), Expect = 1.5
Identities = 4/31 (12%), Positives = 15/31 (48%)
Query: 71 GFDFVFSQAEKEIMALDCHQFVESGADGFVI 101
G D +++ +++++ + + G F +
Sbjct: 83 GQDIKWNKEDRDLLLAKFEKMYQLGVRSFAV 113
>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate
dehydrogenase (IMPDH) {Thermotoga maritima [TaxId:
2336]}
Length = 330
Score = 26.2 bits (57), Expect = 1.9
Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 7/104 (6%)
Query: 34 ELCAALS-EGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKE-IMALDCHQF 91
L AL+ EGG+ ++ V + R+ G S E + L
Sbjct: 52 ALAKALAREGGIGIIHKNLTPDEQARQVSIVKKTRLLVGAAVGTSPETMERVEKL----- 106
Query: 92 VESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHRAFDV 135
V++G D VI G IE + +K D P+
Sbjct: 107 VKAGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATP 150
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 25.6 bits (55), Expect = 2.7
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 87 DCHQFVESGADGFVIG-ALTGEQEIDIEFIRQLK 119
+ + + G G V+G A+T +EI FI LK
Sbjct: 197 EAKKINDLGVAGIVVGGAITRPKEIAERFIEALK 230
>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl
phosphate synthase {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 231
Score = 25.5 bits (55), Expect = 2.7
Identities = 11/109 (10%), Positives = 26/109 (23%), Gaps = 18/109 (16%)
Query: 17 DSVASALAAVRGGADRLEL--------------CAALSEGGLTPTLGLYRVIKRLVLVPV 62
++ A G D + + +S+ GL + + V
Sbjct: 18 NTDEIIKAVADSGTDAVMISGTQNVTYEKARTLIEKVSQYGLPIVVEPSDPSNVVYDVDY 77
Query: 63 FVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEID 111
+ V D + + + F + +I+
Sbjct: 78 LFVPTVLNSADGDWITGKHAQWV----RMHYENLQKFTEIIESEFIQIE 122
>d1nqka_ c.1.16.4 (A:) Alkanesulfonate monooxygenase SsuD
{Escherichia coli [TaxId: 562]}
Length = 362
Score = 25.4 bits (54), Expect = 2.9
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 84 MALDCHQFVESGADGFVIGALTGEQEIDIEFIRQL 118
M+L+ F+ + DG +G G + +D +++Q+
Sbjct: 1 MSLNMFWFLPTHGDGHYLGTEEGSRPVDHGYLQQI 35
>d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 293
Score = 25.5 bits (54), Expect = 3.2
Identities = 4/16 (25%), Positives = 6/16 (37%)
Query: 92 VESGADGFVIGALTGE 107
+ G D + TG
Sbjct: 30 IRKGIDKLFVNGTTGL 45
>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays)
[TaxId: 4577]}
Length = 261
Score = 25.2 bits (54), Expect = 3.5
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 11/48 (22%)
Query: 87 DCHQFVESGADGFVIG---------ALTGEQEID--IEFIRQLKTIIG 123
Q + GADG +IG A + +Q + E+ R +K +G
Sbjct: 214 HVKQIAQWGADGVIIGSAMVRQLGEAASPKQGLRRLEEYARGMKNALG 261
>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli
[TaxId: 562]}
Length = 295
Score = 25.4 bits (54), Expect = 3.6
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 92 VESGADGFVIGALTGE 107
++ G DG +G TGE
Sbjct: 33 IQQGIDGLYVGGSTGE 48
>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus
influenzae [TaxId: 727]}
Length = 293
Score = 25.0 bits (53), Expect = 4.4
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 89 HQFVESGADGFVIGALTGE 107
H + DG +G TGE
Sbjct: 32 HNIDKMKVDGLYVGGSTGE 50
>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate
dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId:
1314]}
Length = 365
Score = 25.0 bits (54), Expect = 4.7
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 88 CHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFH 130
E+GAD VI G + I +++ +R +
Sbjct: 112 AEALFEAGADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAG 154
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase
{Streptococcus pyogenes [TaxId: 1314]}
Length = 217
Score = 24.6 bits (53), Expect = 5.7
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 90 QFVESGADGFVIG-ALTGEQEIDIEFIRQLKTII 122
E+GA+ FV G L ++ + ++ L+T +
Sbjct: 184 ACYEAGANVFVAGSYLFKASDL-VSQVQTLRTAL 216
>d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida
[TaxId: 303]}
Length = 227
Score = 24.6 bits (52), Expect = 5.8
Identities = 6/45 (13%), Positives = 14/45 (31%)
Query: 80 EKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGD 124
++ E G + D+ +R ++ +GD
Sbjct: 12 GVKLATERAVTAAELGFRAVKTKIGYPALDQDLAVVRSIRQAVGD 56
>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga
maritima [TaxId: 2336]}
Length = 295
Score = 24.5 bits (52), Expect = 5.8
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 92 VESGADGFVIGALTGE 107
+E+G + ++ TGE
Sbjct: 32 LENGVNALIVLGTTGE 47
>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus
anthracis [TaxId: 1392]}
Length = 292
Score = 24.4 bits (52), Expect = 6.3
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 92 VESGADGFVIGALTGE 107
+++G V+G TGE
Sbjct: 34 IDNGTTAIVVGGTTGE 49
>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase
{Escherichia coli [TaxId: 562]}
Length = 292
Score = 24.5 bits (52), Expect = 6.5
Identities = 7/16 (43%), Positives = 7/16 (43%)
Query: 92 VESGADGFVIGALTGE 107
V SG V TGE
Sbjct: 32 VASGTSAIVSVGTTGE 47
>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice
(Oryza sativa) [TaxId: 4530]}
Length = 220
Score = 24.4 bits (52), Expect = 6.8
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 90 QFVESGADGFVIG-ALTGEQEIDIEFIRQLKTII 122
+GA+ V G ++ G E E I L+ +
Sbjct: 184 VAASAGANCIVAGSSIFGAAEP-GEVISALRKSV 216
>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 296
Score = 24.1 bits (51), Expect = 7.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 92 VESGADGFVIGALTGE 107
V+ G DG V+ TGE
Sbjct: 38 VDQGCDGLVVSGTTGE 53
>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium
falciparum [TaxId: 5833]}
Length = 221
Score = 23.6 bits (50), Expect = 9.8
Identities = 7/59 (11%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 65 MIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIG-ALTGEQEIDIEFIRQLKTII 122
+ +R + + Q + + GA+ V G ++ ++ I ++ +
Sbjct: 161 VSFLRKKYKNLNIQVDGGLNIETTEISASHGANIIVAGTSIFNAEDP-KYVIDTMRVSV 218
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.141 0.418
Gapped
Lambda K H
0.267 0.0421 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 563,460
Number of extensions: 24616
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 32
Length of query: 146
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 69
Effective length of database: 1,350,386
Effective search space: 93176634
Effective search space used: 93176634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.4 bits)