BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7933
(171 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FAO|A Chain A, Structure Of The Pleckstrin Homology Domain From
Dapp1PHISH IN COMPLEX WITH INOSITOL 1,3,4,5-
Tetrakisphosphate
pdb|1FB8|A Chain A, Structure Of The Pleckstrin Homology Domain From
Dapp1/phish
Length = 126
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 10/109 (9%)
Query: 47 SRKGYLNILEQKTNGWKKRWVAVRRPYVFIFRDEKDPVERALVNL---ATAQVEYSEDQQ 103
+++GYL WK RW + R + F+D+ P +++L + Q +YS+++
Sbjct: 19 TKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERV 78
Query: 104 AMVRVPFSFSVVTKHGGYLMQTAGAREVHEWLYAINPLLAGQIRSKTSR 152
+ F F YL G E EW+ + L+ QIR + ++
Sbjct: 79 NCFCLVFPFRTF-----YLCAKTGV-EADEWIKILRWKLS-QIRKQLNQ 120
>pdb|4GN1|A Chain A, Crystal Structure Of The Ra And Ph Domains Of Lamellipodin
pdb|4GN1|B Chain B, Crystal Structure Of The Ra And Ph Domains Of Lamellipodin
pdb|4GN1|C Chain C, Crystal Structure Of The Ra And Ph Domains Of Lamellipodin
pdb|4GN1|D Chain D, Crystal Structure Of The Ra And Ph Domains Of Lamellipodin
Length = 255
Score = 34.3 bits (77), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 22/116 (18%)
Query: 34 VPEIEEIRISPVVSRKGYLNILEQKTNGWKKRWVAVRRPYVFIFRDEKDPVERALV---N 90
VPEIE G L + + WKKR+ +R ++ K V R LV
Sbjct: 131 VPEIE-----------GVLWLKDDGKKSWKKRYFLLRASGIYYVPKGKAKVSRDLVCFLQ 179
Query: 91 LATAQVEYSEDQQAMVRVPFSFSVVTKH------GGYL--MQTAGAREVHEWLYAI 138
L V Y +D + + P + +V KH Y+ + R +H+W+ I
Sbjct: 180 LDHVNVYYGQDYRNKYKAPTDYCLVLKHPQIQKKSQYIKYLCCDDVRTLHQWVNGI 235
>pdb|4GMV|A Chain A, Crystal Structure Of The Coiled-Coil, Ra And Ph Domains Of
Lamellipodin
pdb|4GMV|B Chain B, Crystal Structure Of The Coiled-Coil, Ra And Ph Domains Of
Lamellipodin
Length = 281
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 22/116 (18%)
Query: 34 VPEIEEIRISPVVSRKGYLNILEQKTNGWKKRWVAVRRPYVFIFRDEKDPVERALV---N 90
VPEIE G L + + WKKR+ +R ++ K V R LV
Sbjct: 157 VPEIE-----------GVLWLKDDGKKSWKKRYFLLRASGIYYVPKGKAKVSRDLVCFLQ 205
Query: 91 LATAQVEYSEDQQAMVRVPFSFSVVTKH------GGYL--MQTAGAREVHEWLYAI 138
L V Y +D + + P + +V KH Y+ + R +H+W+ I
Sbjct: 206 LDHVNVYYGQDYRNKYKAPTDYCLVLKHPQIQKKSQYIKYLCCDDVRTLHQWVNGI 261
>pdb|2DKP|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Protein Family A Member 5 From Human
Length = 128
Score = 33.5 bits (75), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 43 SPVVSRKGYLNILEQKTNG---WKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQVEY- 98
+PVV R+G+L +Q + G WKKRW + +F +RDEK+ + L + Q+
Sbjct: 19 APVV-RRGWL--YKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIALL 75
Query: 99 -SEDQQAMVRVPFSFSVVTKHG-GYLMQTAGAREVHEWLYAI 138
SED + ++F + Y T +E+ W+ A+
Sbjct: 76 TSEDH---INRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAM 114
>pdb|1X1G|A Chain A, Solution Structure Of The C-Terminal Ph Domain Of Human
Pleckstrin 2
Length = 129
Score = 33.1 bits (74), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 13/116 (11%)
Query: 40 IRISPVVSRKGYLNILEQKTNGWKKRWVAVRRPYVFIF-----RDEKDPVERALVNLATA 94
+ +S V ++GYL K WK R +R+ F+ ++E PV +L +
Sbjct: 12 VELSGTVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPV--GGFSLRGS 69
Query: 95 QVEYSEDQQAMVRVPFS-----FSVVTKHG-GYLMQTAGAREVHEWLYAINPLLAG 144
V ED V + F V+TK Y +Q + E EW+ AI L +G
Sbjct: 70 LVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLTSG 125
>pdb|1EAZ|A Chain A, Crystal Structure Of The Phosphoinositol
(3,4)-Bisphosphate Binding Ph Domain Of Tapp1 From Human
Length = 125
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 46 VSRKGYLNILEQKTNGWKKRWVAVRRPYVFIFRDE--KDPVERALVNLATAQVEYSEDQQ 103
V + GY WK+R+ + + F+ E K+P+ R + +V+ +
Sbjct: 14 VIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPL-RVIPLKEVHKVQECKQSD 72
Query: 104 AMVRVPFSFSVVTKHGGYLMQTAGAREVHEWLYAINPLLAGQ 145
M+R F +VT + +Q E+H W+ A++ + Q
Sbjct: 73 IMMRDNL-FEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQ 113
>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R09|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 18/126 (14%)
Query: 4 PDKTARSLFEDSRGRPDS--NEATQDTSVILYVPEIEEIRISPVVSRKGYLNILEQKTNG 61
P++ R+L+E + P + D + + P+ R+G+L L +
Sbjct: 180 PEELLRNLYESIKNEPFKIPEDDGNDLTYTFFNPD-----------REGWLLKLGGRVKT 228
Query: 62 WKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQVEYSEDQQAMVRVPFSFSVVT-KHGG 120
WK+RW + ++ F D R ++ L + ED R P F + H G
Sbjct: 229 WKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDP----RKPNCFELYNPSHKG 284
Query: 121 YLMQTA 126
+++
Sbjct: 285 QVIKAC 290
>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R0D|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 50/130 (38%), Gaps = 26/130 (20%)
Query: 4 PDKTARSLFEDSRGRP------DSNEATQDTSVILYVPEIEEIRISPVVSRKGYLNILEQ 57
P++ R+L+E + P D N+ T + P+ R+G+L L
Sbjct: 180 PEELLRNLYESIKNEPFKIPEDDGNDLTH----TFFNPD-----------REGWLLKLGG 224
Query: 58 KTNGWKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQVEYSEDQQAMVRVPFSFSVVT- 116
+ WK+RW + ++ F D R ++ L + ED R P F +
Sbjct: 225 RVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDP----RKPNCFELYNP 280
Query: 117 KHGGYLMQTA 126
H G +++
Sbjct: 281 SHKGQVIKAC 290
>pdb|1FHW|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
pdb|1FHW|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
Length = 129
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 47 SRKGYLNILEQKTNGWKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQVEYSEDQQAMV 106
R+G+L L + WK+RW + ++ F D R ++ L + ED
Sbjct: 4 DREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDP---- 59
Query: 107 RVPFSFSVVT-KHGGYLMQTA 126
R P F + H G +++
Sbjct: 60 RKPNCFELYNPSHKGQVIKAC 80
>pdb|1FHX|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
pdb|1FHX|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 129
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 47 SRKGYLNILEQKTNGWKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQVEYSEDQQAMV 106
R+G+L L + WK+RW + ++ F D R ++ L + ED
Sbjct: 4 DREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDP---- 59
Query: 107 RVPFSFSVVT-KHGGYLMQTA 126
R P F + H G +++
Sbjct: 60 RKPNCFELYNPSHKGQVIKAC 80
>pdb|1PLS|A Chain A, Solution Structure Of A Pleckstrin Homology Domain
Length = 113
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 42 ISPVVSRKGYLNILEQKTNGWKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQVEYSED 101
+ P R+GYL N WK WV + + ++ + D + ++ L + + +
Sbjct: 1 MEPKRIREGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTL--TSP 58
Query: 102 QQAMVRVPFSFSV-VTKHGGYLMQTAGAREVHEWLYAIN 139
Q + F F + TK + Q A E W+ IN
Sbjct: 59 CQDFGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDIN 97
>pdb|2WFM|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
Length = 264
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 37 IEEIRISPVVSRKG--YLNILEQKTNGWKKRWVAVRRPYVFIFRDEKDPVE 85
+E++ ++ +++R G + L + +R+ +V+R Y+F D+ PVE
Sbjct: 172 VEDLELAKMLTRPGSLFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVE 222
>pdb|2WFL|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 37 IEEIRISPVVSRKG--YLNILEQKTNGWKKRWVAVRRPYVFIFRDEKDPVE 85
+E++ ++ +++R G + L + +R+ +V+R Y+F D+ PVE
Sbjct: 172 VEDLELAKMLTRPGSLFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVE 222
>pdb|2WFL|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 37 IEEIRISPVVSRKG--YLNILEQKTNGWKKRWVAVRRPYVFIFRDEKDPVE 85
+E++ ++ +++R G + L + +R+ +V+R Y+F D+ PVE
Sbjct: 172 VEDLELAKMLTRPGSLFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVE 222
>pdb|3GZJ|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
Length = 258
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 37 IEEIRISPVVSRKG--YLNILEQKTNGWKKRWVAVRRPYVFIFRDEKDPVE 85
+E++ ++ +++R G + L + +R+ +V+R Y+F D+ PVE
Sbjct: 166 VEDLELAKMLTRPGSLFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVE 216
>pdb|2COF|A Chain A, Solution Structure Of The C-Terminal Ph Domain Of
Hypothetical Protein Kiaa1914 From Human
Length = 107
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 51 YLNILEQKTNGWKKRWVAVRRPYVFIFRD 79
YLN+L WK RW +VR ++ ++D
Sbjct: 13 YLNVLVNSQ--WKSRWCSVRDNHLHFYQD 39
>pdb|2J59|M Chain M, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|N Chain N, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|O Chain O, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|P Chain P, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|Q Chain Q, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|R Chain R, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 168
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 21/109 (19%)
Query: 40 IRISPVVSRKGYLNILEQKTNG----WKKRWVAVRRPYVFIFRDEKD---PVERAL---V 89
+ P+V+ KG ++ G WK+ +V +R +++++D+++ P E V
Sbjct: 9 LHFRPLVTDKG------KRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISV 62
Query: 90 NLATAQVEYSEDQQAMVRVPFSFSVVTKHGGYLMQTAGAREVHEWLYAI 138
N + YSE ++ V F + T L Q ++ W+ I
Sbjct: 63 NACLIDISYSETKRKNV-----FRLTTSDCECLFQAEDRDDMLAWIKTI 106
>pdb|4DR0|A Chain A, Crystal Structure Of Bacillus Subtilis Dimanganese(Ii)
Nrdf
pdb|4DR0|B Chain B, Crystal Structure Of Bacillus Subtilis Dimanganese(Ii)
Nrdf
Length = 350
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 18 RPDSNEATQDTSVILYVPEIEEIRISPVV-----SRKGYLNILEQKTNGWKKRWVAVRRP 72
R ++N+A + + P EE I+P+V ++ + K NG+KK V +
Sbjct: 282 RYNANKALMNLG---FDPYFEEEDINPIVLNGLNTKTKSHDFFSMKGNGYKKATVEPLKD 338
Query: 73 YVFIFRDEKDPV 84
F F DEK+ +
Sbjct: 339 DDFYFEDEKEQI 350
>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human
Length = 117
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 46 VSRKGYLNILEQKTNG---WKKRWVAVRRPYVFIFRDEKD 82
V++ G+L +Q ++G W KRW + +F ++DEK+
Sbjct: 11 VTKAGWL--FKQASSGVKQWNKRWFVLVDRCLFYYKDEKE 48
>pdb|2COD|A Chain A, Solution Structure Of The N-Terminal Ph Domain Of Arap2
Protein From Human
Length = 115
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 16/104 (15%)
Query: 63 KKRWVAVRRPYVFIFRDEKDPVERALVNL-ATAQVEYSEDQQAMVRVPFSFSVVTKHGGY 121
+KRWV + + +EK+ + ++ L A + V D + F VVT +
Sbjct: 26 QKRWVKFDGLSISYYNNEKEMYSKGIIPLSAISTVRVQGDNK--------FEVVTTQRTF 77
Query: 122 LMQTAGAREVHEWLYAINPLLAGQIRSKTSRRQPPASPALGPSS 165
+ + E ++W+ +L ++S++ Q AS GPSS
Sbjct: 78 VFRVEKEEERNDWI----SILLNALKSQSLTSQSQAS---GPSS 114
>pdb|1U5F|A Chain A, Crystal Structure Of The Ph Domain Of Skap-Hom With 8
Vector-Derived N-Terminal Residues
Length = 148
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 5/104 (4%)
Query: 44 PVVSRKGYLNILEQKTN----GWKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQVEYS 99
P V + GYL + + W+KRW A+ + + + +KD ++ + V +
Sbjct: 15 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMN 74
Query: 100 EDQQAMVRVPFSFSVVTKHGG-YLMQTAGAREVHEWLYAINPLL 142
+ + F + Y A ++ EW+ + +L
Sbjct: 75 NTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL 118
>pdb|1U5E|A Chain A, Crystal Structure Of A N-Terminal Fragment Of Skap-Hom
Containing Both The Helical Dimerization Domain And The
Ph Domain
pdb|1U5E|B Chain B, Crystal Structure Of A N-Terminal Fragment Of Skap-Hom
Containing Both The Helical Dimerization Domain And The
Ph Domain
pdb|2OTX|A Chain A, Crystal Structure Of A N-Terminal Fragment Of Skap-Hom
Containing Both The Helical Dimerization Domain And The
Ph Domain
pdb|2OTX|B Chain B, Crystal Structure Of A N-Terminal Fragment Of Skap-Hom
Containing Both The Helical Dimerization Domain And The
Ph Domain
Length = 211
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 5/104 (4%)
Query: 44 PVVSRKGYLNILEQKTN----GWKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQVEYS 99
P V + GYL + + W+KRW A+ + + + +KD ++ + V +
Sbjct: 104 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMN 163
Query: 100 EDQQAMVRVPFSFSVVTKHGG-YLMQTAGAREVHEWLYAINPLL 142
+ + F + Y A ++ EW+ + +L
Sbjct: 164 NTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL 207
>pdb|2DHJ|A Chain A, Solution Structure Of The Ph Domain Of Rho Gtpase
Activating Protein 21 From Human
Length = 125
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 21/109 (19%)
Query: 40 IRISPVVSRKGYLNILEQKTNG----WKKRWVAVRRPYVFIFRDEKD---PVERAL---V 89
+ P+V+ KG ++ G WK+ +V +R +++++D+++ P E V
Sbjct: 15 LHFRPLVTDKG------KRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISV 68
Query: 90 NLATAQVEYSEDQQAMVRVPFSFSVVTKHGGYLMQTAGAREVHEWLYAI 138
N + YSE ++ V F + T L Q ++ W+ I
Sbjct: 69 NACLIDISYSETKRKNV-----FRLTTSDCECLFQAEDRDDMLAWIKTI 112
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 34 VPEIEEIRISPVVSR----KGYLNILEQK-TNGWKKRWVAVRRPYVFIFRDEKDPVERAL 88
P + + P +SR +GY+ K T G++KRW + + F+D D R
Sbjct: 255 FPGASDADLVPKLSRNYLKEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAFARGE 314
Query: 89 VNLATAQVEYS 99
V + + + Y+
Sbjct: 315 VFIGSKESGYT 325
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 34 VPEIEEIRISPVVSR----KGYLNILEQK-TNGWKKRWVAVRRPYVFIFRDEKDPVERAL 88
P + + P +SR +GY+ K T G++KRW + + F+D D R
Sbjct: 253 FPGASDADLVPKLSRNYLKEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAFARGE 312
Query: 89 VNLATAQVEYS 99
V + + + Y+
Sbjct: 313 VFIGSKESGYT 323
>pdb|2YRY|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin
Homology Domain-Containing Family A Member 6 From Human
Length = 122
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 46 VSRKGYLNILEQKTNG---WKKRWVAVRRPYVFIFRDEKD 82
V++ G+L +Q ++G W KRW + +F ++DEK+
Sbjct: 22 VTKAGWL--FKQASSGVKQWNKRWFVLVDRCLFYYKDEKE 59
>pdb|1U5G|A Chain A, Crystal Structure Of The Ph Domain Of Skap-Hom
pdb|1U5G|B Chain B, Crystal Structure Of The Ph Domain Of Skap-Hom
pdb|1U5G|C Chain C, Crystal Structure Of The Ph Domain Of Skap-Hom
pdb|1U5G|D Chain D, Crystal Structure Of The Ph Domain Of Skap-Hom
Length = 122
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 5/104 (4%)
Query: 44 PVVSRKGYLNILEQKTN----GWKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQVEYS 99
P V + GYL + + W+KRW A+ + + + +KD ++ + V +
Sbjct: 15 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMN 74
Query: 100 EDQQAMVRVPFSFSVVTKHGG-YLMQTAGAREVHEWLYAINPLL 142
+ + F + Y A ++ EW+ + +L
Sbjct: 75 NTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL 118
>pdb|1FGY|A Chain A, Grp1 Ph Domain With Ins(1,3,4,5)p4
pdb|1FGZ|A Chain A, Grp1 Ph Domain (Unliganded)
Length = 127
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 47 SRKGYLNILEQKTNGWKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQV 96
R+G+L L + WK+RW + ++ F D R ++ L +
Sbjct: 6 DREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSI 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,927,854
Number of Sequences: 62578
Number of extensions: 182652
Number of successful extensions: 432
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 32
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)