RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7933
(171 letters)
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; PH domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 57.9 bits (140), Expect = 8e-12
Identities = 19/95 (20%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Query: 46 VSRKGYLNIL-EQKTNGWKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQVEYSEDQQA 104
+KGYL + W++R +V+ + I + + A +NL T QV+ + +
Sbjct: 10 SEKKGYLLKKSDGIRKVWQRRKCSVKNGILTISHATSNR-QPAKLNLLTCQVKPNAED-- 66
Query: 105 MVRVPFSFSVVTKHGGYLMQTAGAREVHEWLYAIN 139
SF +++ + Y Q ++ W+ +
Sbjct: 67 ----KKSFDLISHNRTYHFQAEDEQDYVAWISVLT 97
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 113
Score = 55.4 bits (134), Expect = 9e-11
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Query: 42 ISPVVSRKGYLNILEQKTNGWKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQVEYSED 101
+ P R+GYL N WK WV + + ++ + D + ++ L + +
Sbjct: 1 MEPKRIREGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQ 60
Query: 102 QQAMVRVPFSFSVVT-KHGGYLMQTAGAREVHEWLYAIN 139
+ F F + T K + Q A E W+ IN
Sbjct: 61 DFG--KRMFVFKITTTKQQDHFFQAAFLEERDAWVRDIN 97
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid
degradation, phosphatidylinositol (3, 4)-bisphosphate,
signalling; HET: CIT; 1.40A {Homo sapiens} SCOP:
b.55.1.1
Length = 125
Score = 54.4 bits (131), Expect = 2e-10
Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 3/116 (2%)
Query: 43 SPVVSRKGYLNILEQKTNGWKKRWVAVRRPYVFIFRDEKDPVERALVNLATA-QVEYSED 101
V + GY WK+R+ + + F+ E + ++ L +V+ +
Sbjct: 11 DSAVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQ 70
Query: 102 QQAMVRVPFSFSVVTKHGGYLMQTAGAREVHEWLYAINPLLAGQI-RSKTSRRQPP 156
M+R F +VT + +Q E+H W+ A++ + Q +++ + P
Sbjct: 71 SDIMMR-DNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQRGPGRSASSEHP 125
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21,
myristate, transport, nucleotide-binding, rhogap
protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dhj_A
Length = 168
Score = 55.6 bits (133), Expect = 2e-10
Identities = 16/140 (11%), Positives = 47/140 (33%), Gaps = 17/140 (12%)
Query: 46 VSRKGYLNILEQKTNG----------WKKRWVAVRRPYVFIFRDEKDPVER----ALVNL 91
+++G+L+ T+ WK+ +V +R +++++D+++ +++
Sbjct: 3 AAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISV 62
Query: 92 ATAQVEYSEDQQAMVRVPFSFSVVTKHGGYLMQTAGAREVHEWLYAINPLLAGQIRSKTS 151
++ S + + F + T L Q ++ W+ I
Sbjct: 63 NACLIDISYSET---KRKNVFRLTTSDCECLFQAEDRDDMLAWIKTIQESSNLNEEDTGV 119
Query: 152 RRQPPASPALGPSSTQCLPQ 171
+ S + +
Sbjct: 120 TNRDLISRRIKEYNNLMSKA 139
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 149
Score = 53.6 bits (128), Expect = 8e-10
Identities = 14/96 (14%), Positives = 35/96 (36%), Gaps = 2/96 (2%)
Query: 43 SPVVSRKGYLNILEQKTNGWKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQVEYSEDQ 102
+ + +G+L I ++ W +R +F + D+K + +++ ++
Sbjct: 15 ALPLYFEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDLTCLTEQNS 74
Query: 103 QAMVRVPFSFSVVTKHGGYLMQTAGAREVHEWLYAI 138
+ F++V ++T EW I
Sbjct: 75 TE--KNCAKFTLVLPKEEVQLKTENTESGEEWRGFI 108
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH
domains (ARAP) 2, PH domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 115
Score = 52.8 bits (127), Expect = 8e-10
Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 8/117 (6%)
Query: 43 SPVVSRKGYLNIL-EQKTNGWKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQVEYSED 101
S + G+L+ L Q ++KRWV + + +EK+ + ++ L+ +
Sbjct: 5 SSGKVKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAISTVRVQG 64
Query: 102 QQAMVRVPFSFSVVTKHGGYLMQTAGAREVHEWLYAINPLLAGQIRSKTSRRQPPAS 158
F VVT ++ + E ++W+ + L Q + S+ P+S
Sbjct: 65 -------DNKFEVVTTQRTFVFRVEKEEERNDWISILLNALKSQSLTSQSQASGPSS 114
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4;
pleckstrin homoloy domain, signal transduction,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 109
Score = 52.0 bits (125), Expect = 1e-09
Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 4/95 (4%)
Query: 46 VSRKGYLNILEQKTNGWKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQVEYSEDQQAM 105
+ GYL + WK W ++ ++ + +D L V +D+ +
Sbjct: 8 STMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTLVKDENSE 67
Query: 106 VRVPFSFSVVT-KHGGYLMQTAGAREVHEWLYAIN 139
F ++ Y+ + A W+ A
Sbjct: 68 ---SKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQ 99
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 115
Score = 51.6 bits (124), Expect = 2e-09
Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 4/98 (4%)
Query: 43 SPVVSRKGYLNILEQKTNGWKKRWVAVRRPYVFIFRDEKDPVERALVNLATA-QVEYSED 101
S V ++GY+ + W +RW ++ + + E ++ + L VE D
Sbjct: 5 SSGVLKQGYMMKKGHRRKNWTERWFVLKPNIISYYVSEDLKDKKGDILLDENCCVESLPD 64
Query: 102 QQAMVRVPFSFSVVTKHGGYLMQTAGAREVHEWLYAIN 139
+ F V + + + ++ EW+ AI+
Sbjct: 65 KD---GKKCLFLVKCFDKTFEISASDKKKKQEWIQAIH 99
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain,
phosphatidylinositol binding, structural genomics; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 118
Score = 51.3 bits (123), Expect = 3e-09
Identities = 16/120 (13%), Positives = 42/120 (35%), Gaps = 18/120 (15%)
Query: 46 VSRKGYLNILEQKTNGWKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQVEYSEDQQAM 105
+ G+L W++R+ +R ++ ++DE+D + + L ++
Sbjct: 8 PIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEE 67
Query: 106 VRVPFSFSVVTKHGG--------YLMQTAGAREVHEWLYAINPLLAGQIRSKTSRRQPPA 157
F F ++ Y++ + E+ EW+ + + + P +
Sbjct: 68 AG-KFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLR---------RVAGSGPSS 117
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH
domain, phret1, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 130
Score = 51.5 bits (123), Expect = 4e-09
Identities = 17/125 (13%), Positives = 41/125 (32%), Gaps = 9/125 (7%)
Query: 43 SPVVSRKGYLNILEQKTNGWKKRWVAVRRPYVFIF---RDEKDPVERALVNLATAQVEYS 99
S + R G+L WK+ W A+ + +D +R +++ ++
Sbjct: 5 SSGLVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVG 64
Query: 100 EDQQAMV-----RVPFSFSVVTKHGG-YLMQTAGAREVHEWLYAINPLLAGQIRSKTSRR 153
++ Q + +V + G + + W A+ + + +
Sbjct: 65 QECQDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANSTPAPAGATVP 124
Query: 154 QPPAS 158
P+S
Sbjct: 125 SGPSS 129
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology,
lipid transport; NMR {Homo sapiens}
Length = 94
Score = 50.5 bits (121), Expect = 4e-09
Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 8/96 (8%)
Query: 46 VSRKGYLNILEQKTNGWKKRWVAVRRPYVFIFRDEKDPVE--RALVNLATAQVEYSEDQQ 103
V R G L+ +GW+ RWV ++ + ++ E + R + L+ A + +
Sbjct: 1 VERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDETEYGCRGSICLSKAVITPHDFD- 59
Query: 104 AMVRVPFSFSVVTKHGGYLMQTAGAREVHEWLYAIN 139
F + + ++ +W+ AI
Sbjct: 60 -----ECRFDISVNDSVWYLRAQDPDHRQQWIDAIE 90
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH
domain, signaling protein; 2.60A {Mus musculus} SCOP:
b.55.1.1 PDB: 2otx_A
Length = 211
Score = 52.4 bits (125), Expect = 4e-09
Identities = 24/145 (16%), Positives = 48/145 (33%), Gaps = 6/145 (4%)
Query: 3 SPDKTARSLFEDSRGRPDSNEATQDTSVILYVPEIEEIRISPVVSRKGYLNILEQK---- 58
D A S ++ S P I + V+ + GYL +
Sbjct: 64 YDDPFAGPADTISLASERYDKDDDGPSDGNQFPPIAAQDLPFVI-KAGYLEKRRKDHSFL 122
Query: 59 TNGWKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQVEYSEDQQAMVRVPFSFSVVTKH 118
W+KRW A+ + + + +KD ++ + V + + + F +
Sbjct: 123 GFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPD 182
Query: 119 G-GYLMQTAGAREVHEWLYAINPLL 142
Y A ++ EW+ + +L
Sbjct: 183 KRIYQFTAASPKDAEEWVQQLKFIL 207
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides;
pleckstrin, inositol tetrakisphosphate signal
transduction protein, adaptor protein; HET: 4IP; 1.80A
{Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Length = 126
Score = 50.9 bits (122), Expect = 5e-09
Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 5/112 (4%)
Query: 43 SPVVSRKGYLNILEQKTNGWKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQ-VEYSED 101
+ +++GYL WK RW + R + F+D+ P +++L V++
Sbjct: 15 PSLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYS 74
Query: 102 QQAMVRVPFSFSVVTKHGGYLMQTAGAREVHEWLYAINPLLAGQIRSKTSRR 153
Q+ F +V + + E EW+ + L+ +
Sbjct: 75 QER----VNCFCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQIRKQLNQGE 122
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP:
b.55.1.1
Length = 122
Score = 50.3 bits (120), Expect = 7e-09
Identities = 19/106 (17%), Positives = 42/106 (39%), Gaps = 14/106 (13%)
Query: 45 VVSRKGYLNILEQKTN--GWKKRWVAVRRPYVFIFRDEKDPVE--------RALVNLATA 94
V+RK + +K + W K ++A + + ++D+K +L A
Sbjct: 13 YVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNA 72
Query: 95 QVEYSEDQQAMVRVPFSFSVVTKHGG-YLMQTAGAREVHEWLYAIN 139
+E + D + V +G +L+Q E+ +W+ ++
Sbjct: 73 AIEIASDYT---KKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLK 115
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain,
pleckstrin homology domain-containing protein family A
member 5; NMR {Homo sapiens}
Length = 128
Score = 49.8 bits (119), Expect = 1e-08
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 3/108 (2%)
Query: 46 VSRKGYLNIL-EQKTNGWKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQVEYSEDQQA 104
V R+G+L WKKRW + +F +RDEK+ + L + Q+ +
Sbjct: 21 VVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIALLTSEDH 80
Query: 105 MVRVPFSFSVVT-KHGGYLMQTAGAREVHEWLYAINPLLAGQIRSKTS 151
+ R ++F Y T +E+ W+ A+ Q +S
Sbjct: 81 INR-KYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAALVQTSGPSS 127
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex,
pleckstrin homology domain, ligand binding protein; HET:
I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Length = 129
Score = 49.9 bits (119), Expect = 1e-08
Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 15/112 (13%)
Query: 43 SPVVSRKGYLNILEQKTNG------WKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQV 96
S V + G LN+ + G W WV + + +R+ + A ++
Sbjct: 9 SHEVEKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRP 68
Query: 97 EYSED-QQAMVRV-------PFSFSVVTKHGG-YLMQTAGAREVHEWLYAIN 139
E S D + A + + T G +L+Q+ E+ W A+
Sbjct: 69 ESSVDLRGAALAHGRHLSSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALR 120
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator,
pleckstrin homology domain, STR genomics consortium,
SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Length = 124
Score = 49.1 bits (117), Expect = 3e-08
Identities = 17/117 (14%), Positives = 36/117 (30%), Gaps = 22/117 (18%)
Query: 43 SPVVSRKGYLN---ILE----QKTNGWKKRWVAVRRPYVFIFRDEKDPVE---------- 85
+ + + G L+ + + W W + + F+D K
Sbjct: 5 TKTLDKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFS 64
Query: 86 --RALVNLATAQVEYSEDQQAMVRVPFSFSVVTKHGG-YLMQTAGAREVHEWLYAIN 139
V L A + ++ ++ + ++ G YL+Q + W AI
Sbjct: 65 TPEYTVELRGATLSWAPKDKS--SRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIA 119
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain,
signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Length = 108
Score = 48.6 bits (116), Expect = 3e-08
Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 5/99 (5%)
Query: 46 VSRKGYLN----ILEQKTNGWKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQVEYSED 101
V ++GYL + W+KRW V R + + +EK + + V +
Sbjct: 3 VIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRMAPH 62
Query: 102 QQAMVRVPFSFSVVTKHG-GYLMQTAGAREVHEWLYAIN 139
+ + F + ++ Y E +W+ I+
Sbjct: 63 LRRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQIS 101
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Length = 228
Score = 50.0 bits (119), Expect = 4e-08
Identities = 14/127 (11%), Positives = 41/127 (32%), Gaps = 10/127 (7%)
Query: 46 VSRKGYL-----NILEQKTNGWKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQVEYSE 100
++G+L WKKRW +R+ + F ++ + + V + +A+
Sbjct: 58 ALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEKLKGTVEVRSAKEIIDN 117
Query: 101 DQQAMVRVPFSFSVVTKHGGYLMQTAGAREVHEWLYAINPLLAGQIRSKTSRRQPPASPA 160
+ ++ + + + +W ++ + + + A+P
Sbjct: 118 TNK-----ENGIDIIMADRTFHLIAESPEDASQWFSVLSQVHSSTDQEIREMHDEQANPQ 172
Query: 161 LGPSSTQ 167
+
Sbjct: 173 NAVGTLD 179
Score = 28.0 bits (62), Expect = 1.5
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 109 PFSFSVVTKHGGYLMQTAGAREVHEWLYAINP 140
P SF ++T + E+H W+ +
Sbjct: 195 PNSFVIITANRVLHCNADTPEEMHHWITLLQR 226
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain,
PIP2 binding site, structural genomics; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 126
Score = 48.4 bits (115), Expect = 5e-08
Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 6/118 (5%)
Query: 46 VSRKGYLNIL-EQKTNGWKKRWVAVRRP----YVFIFRDEKDPVERALVNLATAQVEYSE 100
+ GYL + + WKKR+ + + + EK + L+ L V+Y++
Sbjct: 8 MKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYTD 67
Query: 101 DQQAMVRVPFSFSVVTKHGGYLMQTAGAREVHEWLYAINPLLAGQIRSKTSRRQPPAS 158
Q + F+ V + + + ++ W+ A+ GQ Q S
Sbjct: 68 PQPGLEGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMYR-ATGQSHKPVPPTQSGPS 124
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA,
SKIP, complex, virulence, cytoplasm, membrane,
polymorphism, signaling protein; 2.60A {Homo sapiens}
PDB: 3hw2_B
Length = 112
Score = 47.9 bits (114), Expect = 6e-08
Identities = 18/119 (15%), Positives = 41/119 (34%), Gaps = 12/119 (10%)
Query: 47 SRKGYLN----ILEQKTNGWKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQVEYSEDQ 102
+++G L+ WK +V + ++ + D D + VN+ Q
Sbjct: 1 TKEGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIPLLSVNMGGEQCGGCRRA 60
Query: 103 QAMVRVPFSFSVVTK-HGGYLMQTAGAREVHEWLYAINPLLAGQIRSKTSRRQPPASPA 160
R P +F V+ + E+ EW+ + ++ + + +P+
Sbjct: 61 NTTDR-PHAFQVILSDRPCLELSAESEAEMAEWMQHLCQAVSKGVIPQ------GVAPS 112
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 107
Score = 47.1 bits (112), Expect = 9e-08
Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 8/95 (8%)
Query: 46 VSRKGYLNILEQKTNGWKKRWVAVRRPYVFIFRDEKDPVE-RALVNLATAQVEYSEDQQA 104
+ YLN+ + WK RW +VR ++ ++D + ++L +V
Sbjct: 8 LETSSYLNV--LVNSQWKSRWCSVRDNHLHFYQDRNRSKVAQQPLSLVGCEVVPDPSPDH 65
Query: 105 MVRVPFSFSVVTKHGG-YLMQTAGAREVHEWLYAI 138
+SF ++ K ++ + E+ WL +
Sbjct: 66 ----LYSFRILHKGEELAKLEAKSSEEMGHWLGLL 96
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH
domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 117
Score = 47.0 bits (112), Expect = 1e-07
Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 3/99 (3%)
Query: 43 SPVVSRKGYLNIL-EQKTNGWKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQVEYSED 101
+ V++ G+L W KRW + +F ++DEK+ + L + +V +
Sbjct: 8 NAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQP 67
Query: 102 QQAMVRVPFSFSVVTKHGG-YLMQTAGAREVHEWLYAIN 139
+ R +F Y E W+ A+
Sbjct: 68 SDNISR-KHTFKAEHAGVRTYFFSAESPEEQEAWIQAMG 105
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Length = 129
Score = 47.1 bits (112), Expect = 1e-07
Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 5/115 (4%)
Query: 42 ISPVVSRKGYLNILEQKTNGWKKRWVAVRRPYVFI--FRDEKDPVERALVNLATAQVEYS 99
V+ ++G L + WK R +R ++ + ++L V
Sbjct: 14 FRGVIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSV 73
Query: 100 EDQQAMVRV--PFSFSVVT-KHGGYLMQTAGAREVHEWLYAINPLLAGQIRSKTS 151
E + F ++T Y +Q A +E EW+ AI +S
Sbjct: 74 ESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMASRTGKSGPSS 128
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain,
PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 122
Score = 46.7 bits (111), Expect = 2e-07
Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 3/99 (3%)
Query: 43 SPVVSRKGYLNIL-EQKTNGWKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQVEYSED 101
+ V++ G+L W KRW + +F ++DEK+ + L + +V +
Sbjct: 19 NAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQP 78
Query: 102 QQAMVRVPFSFSVVTKHGG-YLMQTAGAREVHEWLYAIN 139
+ R +F Y E W+ A+
Sbjct: 79 SDNISR-KHTFKAEHAGVRTYFFSAESPEEQEAWIQAMG 116
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual
dimerization induced by V derived sequence, signaling
protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Length = 148
Score = 46.5 bits (110), Expect = 3e-07
Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 5/101 (4%)
Query: 44 PVVSRKGYL----NILEQKTNGWKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQVEYS 99
P V + GYL W+KRW A+ + + + +KD ++ + V +
Sbjct: 15 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMN 74
Query: 100 EDQQAMVRVPFSFSVVTKHG-GYLMQTAGAREVHEWLYAIN 139
+ + F + Y A ++ EW+ +
Sbjct: 75 NTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLK 115
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid
binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2i5c_A* 1zm0_A
Length = 109
Score = 45.9 bits (109), Expect = 3e-07
Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 5/102 (4%)
Query: 43 SPVVSRKGYLNILEQKTNGWKKRWVAVRRPYVFI--FRDEKDPVERALVNLATAQVEYSE 100
+ V+ ++G L + WK R +R ++ + ++L V E
Sbjct: 4 TGVIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVE 63
Query: 101 DQQAMVRV--PFSFSVVT-KHGGYLMQTAGAREVHEWLYAIN 139
+ F ++T Y +Q A +E EW+ AI
Sbjct: 64 SNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQ 105
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine
nucleotide exchange factor, alternative splicing, cell
projection, coiled coil; 2.10A {Mus musculus} PDB:
3a8q_A
Length = 263
Score = 47.7 bits (112), Expect = 3e-07
Identities = 21/145 (14%), Positives = 41/145 (28%), Gaps = 24/145 (16%)
Query: 46 VSRKGYLNILEQKTNG------------WKKRWVAVRRPYVFIFRDEKDP------VERA 87
V + G+L T WK+ WV ++ + + R
Sbjct: 11 VRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRC 70
Query: 88 LVNLATAQVEYSEDQQAMVRVPFSFSVVTKHGG-YLMQTAGAREVHEWLYAINPLLAGQI 146
+ + V+ + + F + G YL Q ++ W+ AI+ A
Sbjct: 71 ALFAEDSIVQSVPEHP---KKEHVFCLSNSCGDVYLFQATSQTDLENWVTAIH--SACAS 125
Query: 147 RSKTSRRQPPASPALGPSSTQCLPQ 171
+ L + L +
Sbjct: 126 LFAKKHGKEDTVRLLKSQTRSLLQK 150
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural
genomics, spectrin beta chain, brain 2, KIAA0302; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 123
Score = 45.7 bits (108), Expect = 4e-07
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 12/104 (11%)
Query: 45 VVSRKGYLNILEQKTN--GWKKRWVAVRRPYVFIFRDEKDPVERA------LVNLATAQV 96
++ RK + +K W+ + +RR + ++D K V+LA AQ
Sbjct: 13 MLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQG 72
Query: 97 EYSEDQQAMVRVPFSFSVVTKHGG-YLMQTAGAREVHEWLYAIN 139
+ D + + F + + G YL Q E+ WL +N
Sbjct: 73 SVAFDYR---KRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVN 113
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 129
Score = 45.3 bits (107), Expect = 6e-07
Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 9/109 (8%)
Query: 46 VSRKGYLNILEQKTNGWKKRWVAVRRPYVFIF---RDEKDPVERALVNLATAQVEYSEDQ 102
V ++GYL K WK R +R+ F+ +++ +L + V ED
Sbjct: 18 VVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDN 77
Query: 103 QAMVRV-----PFSFSVVT-KHGGYLMQTAGAREVHEWLYAINPLLAGQ 145
V F V+T Y +Q + E EW+ AI L +G
Sbjct: 78 GVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLTSGP 126
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction;
1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Length = 123
Score = 44.7 bits (106), Expect = 8e-07
Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 3/112 (2%)
Query: 46 VSRKGYLNIL-EQKTNGWKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQVEYSEDQQA 104
V +G+L+ WK+RW + +F ++D ++ V L + +
Sbjct: 11 VHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGPGAP 70
Query: 105 MVRVPFSFSVVTKHGG-YLMQTAGAREVHEWLYAINPLLAGQIRSKTSRRQP 155
R F+F+ Y++ ++ WL A+ + R P
Sbjct: 71 RGR-RFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRASRAEGDDYGQPRSP 121
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus}
SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A*
1u29_A* 1u27_A*
Length = 127
Score = 45.0 bits (106), Expect = 9e-07
Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 18/110 (16%)
Query: 48 RKGYLNILEQKTNGWKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQVEYSEDQ----- 102
R+G+L L + WK+RW + ++ F D R ++ L + D
Sbjct: 7 REGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVLDPRKPNC 66
Query: 103 -------------QAMVRVPFSFSVVTKHGGYLMQTAGAREVHEWLYAIN 139
+A V H Y + E EW+ +I
Sbjct: 67 FELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIK 116
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus
musculus} SCOP: b.55.1.1 PDB: 1mph_A
Length = 106
Score = 44.2 bits (104), Expect = 1e-06
Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 12/104 (11%)
Query: 45 VVSRKGYLNILEQKTN--GWKKRWVAVRRPYVFIFRDEKDPVERA------LVNLATAQV 96
++RK +K + W + + + ++D K V+L A
Sbjct: 4 FLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAIC 63
Query: 97 EYSEDQQAMVRVPFSFSVVTKHGG-YLMQTAGAREVHEWLYAIN 139
E + D + + F + G YL Q E++ W+ AI+
Sbjct: 64 EVALDYK---KKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAIS 104
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 44.3 bits (105), Expect = 1e-06
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 13/105 (12%)
Query: 61 GWKKRWVA--VRRPYVFIFRDEKDPVERALVNLATAQVEYSEDQQAMVRVPFSFSVVTKH 118
GWK RW R+ ++ R +D ++L++A + D + F + T
Sbjct: 25 GWKSRWFFYDERKCQLYYSRTAQDANPLDSIDLSSAVFDCKADAE-----EGIFEIKTPS 79
Query: 119 GGYLMQTAGAREVHEWLYAINPLLAGQIRSKTSRRQP-PASPALG 162
++ A + + WL + R + P P+ P+ G
Sbjct: 80 RVITLKAATKQAMLYWLQQLQ-----MKRWEFHNSPPAPSGPSSG 119
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 117
Score = 44.0 bits (104), Expect = 1e-06
Identities = 18/103 (17%), Positives = 30/103 (29%), Gaps = 6/103 (5%)
Query: 43 SPVVSRKGYLNILEQKTNGWKKRWVAVR--RPYVFIFRDEKDPVERALVNLATA-QVEYS 99
S S +G L WK RW + + + + D + +++LA V
Sbjct: 5 SSGRSYEGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAVAPG 64
Query: 100 EDQQAMVRVP---FSFSVVTKHGGYLMQTAGAREVHEWLYAIN 139
+ F V T Y +W+ I
Sbjct: 65 TPTIGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQ 107
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel
beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo
sapiens} PDB: 3via_A 2dhi_A
Length = 112
Score = 43.7 bits (103), Expect = 2e-06
Identities = 14/106 (13%), Positives = 30/106 (28%), Gaps = 9/106 (8%)
Query: 43 SPVVSRKGYLNILEQKTNGWKKRW-VAVRRPYVFIFRDEKDPVERALVNLATAQVEYSED 101
S + G+L WKK W ++ + D+ V++ +
Sbjct: 2 SMAFVKSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQNIEDKVHMPMDCINIRTG 61
Query: 102 QQAMVRVP-------FSFSVVTKHGG-YLMQTAGAREVHEWLYAIN 139
Q+ P +V + G + + W + +
Sbjct: 62 QECRDTQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQ 107
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1;
guanine nucleotide exchange factor, guanine-nucleotide
releasing factor, lipoprotein; 4.50A {Mus musculus}
Length = 279
Score = 45.3 bits (106), Expect = 2e-06
Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 25/149 (16%)
Query: 42 ISPVVSRKGYLNI---LEQKTNG---------WKKRWVAVRRPYVFIFRDEK------DP 83
V + G L + L K N WK WV+++ +F + + +
Sbjct: 7 AQGTVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNS 66
Query: 84 VERALVNLATAQVEYSEDQQAMVRVPFSFSVVTKHGG-YLMQTAGAREVHEWLYAINPLL 142
V + V + + V+ + + F F + G +L QT E+ W+ AI+
Sbjct: 67 VPKHAVWVENSIVQAVPEHP---KKDFVFCLSNSLGDAFLFQTTSQTELENWITAIHSAC 123
Query: 143 AGQIRSKTSRRQPPASPALGPSSTQCLPQ 171
A + + + L S + L Q
Sbjct: 124 AAAVARHHHKED---TLRLLKSEIKKLEQ 149
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the
pleckstrin homology domain, structural genomics; NMR
{Mus musculus} SCOP: b.55.1.1
Length = 126
Score = 43.4 bits (102), Expect = 3e-06
Identities = 19/108 (17%), Positives = 45/108 (41%), Gaps = 12/108 (11%)
Query: 44 PVVSRK----GYLNILEQKTNG-WKKRWVA--VRRPYVFIFRDEKDPVERALVNLATAQV 96
P V R+ G+L+I + + +G + +R+ + + + D + + + Q+
Sbjct: 9 PYVDRQNRICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQL 68
Query: 97 EYSED-----QQAMVRVPFSFSVVTKHGGYLMQTAGAREVHEWLYAIN 139
Y + + PF F + Y +Q +++ +W+ A+N
Sbjct: 69 TYISKVSIATPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALN 116
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Length = 134
Score = 43.5 bits (102), Expect = 3e-06
Identities = 19/124 (15%), Positives = 37/124 (29%), Gaps = 26/124 (20%)
Query: 42 ISPVVSRKGYLNILEQKTN--GWKKRWVAVRRPYVFIFR---DEKDPVERALVNLATAQV 96
++ V +G+L I E + W +RW + + + DEK +NLA
Sbjct: 1 VNSSVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTS 60
Query: 97 -EYSEDQQAMVRVPFSFSVVTKHGG--------------------YLMQTAGAREVHEWL 135
+ + +F ++T + E W+
Sbjct: 61 RQIEPANREFCARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWM 120
Query: 136 YAIN 139
+N
Sbjct: 121 QKLN 124
>2d9x_A Oxysterol binding protein-related protein 11; PH domain,
OSBP-related protein 11, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 120
Score = 42.6 bits (100), Expect = 6e-06
Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 11/121 (9%)
Query: 43 SPVVSRKGYLNILEQKTNGWKKRWVAVRRPYVFIF----RDEKDPVERALVNLATAQVEY 98
S + GYL GW+ R+ + + ++ R + LA A +
Sbjct: 5 SSGENVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGAVISP 64
Query: 99 SEDQQAMVRVPFSFSVVTKHGG-YLMQTAGAREVHEWLYAINPLLAGQIRSKTSRRQPPA 157
S++ +F+V G Y ++ A+E W+ + + P+
Sbjct: 65 SDED------SHTFTVNAASGEQYKLRATDAKERQHWVSRLQICTQHHTEAIGKNNSGPS 118
Query: 158 S 158
S
Sbjct: 119 S 119
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal
transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2
b.55.1.2 PDB: 1irs_A*
Length = 264
Score = 44.1 bits (103), Expect = 6e-06
Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 13/132 (9%)
Query: 46 VSRKGYLNILEQKTNGWKKRWVAVRRP-------YVFIFRDEKDPVERALVNLATAQVE- 97
V + GYL +K KR+ +R + + +EK ++ + +E
Sbjct: 10 VRKVGYL----RKPKSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLES 65
Query: 98 -YSEDQQAMVRVPFSFSVVTKHGGYLMQTAGAREVHEWLYAINPLLAGQIRSKTSRRQPP 156
++ +++A + ++ T+ + + E W A+ L
Sbjct: 66 CFNINKRADSKNKHLVALYTRDEHFAIAADSEAEQDSWYQALLQLHNRAKGHHDGAAALG 125
Query: 157 ASPALGPSSTQC 168
A G S
Sbjct: 126 AGGGGGSCSGSS 137
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH
domain, lipid-binding, membrane, membrane protein; 1.90A
{Homo sapiens} PDB: 2kcj_A
Length = 103
Score = 41.7 bits (98), Expect = 9e-06
Identities = 16/110 (14%), Positives = 37/110 (33%), Gaps = 12/110 (10%)
Query: 49 KGYLNILEQKTNGWKKRWVAVRRPYVFIFRDEKDPVE--RALVNLATAQVEYSEDQQAMV 106
+G L GW+ RW + + + + D + + + +A +++
Sbjct: 2 EGVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDDVCKGSKGSIKMAVCEIKVHSAD---- 57
Query: 107 RVPFSFSVVTKHGG-YLMQTAGAREVHEWLYAINPLLAGQIRSKTSRRQP 155
++ + M+ A E WL A+ + + +R P
Sbjct: 58 --NTRMELIIPGEQHFYMKAVNAAERQRWLVALG---SSKASLTDTRLVP 102
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH,
RAS-associating, pleckstrin-homology, adapter
phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Length = 256
Score = 42.5 bits (99), Expect = 2e-05
Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 11/107 (10%)
Query: 50 GYLNILEQKTNGWKKRWVAVRRPYVFIFRDEKDPVERALVNLAT---AQVEYSEDQQAMV 106
G+L++ E WKK +V +RR ++ R L LA + + +
Sbjct: 136 GFLHVKELGKKSWKKLYVCLRRSGLYCSTKGTSAAPRHLQLLADLEDSNIFSLIAGRKQY 195
Query: 107 RVPFSFSVVTKHGG--------YLMQTAGAREVHEWLYAINPLLAGQ 145
P + K L+ + W+ A L G
Sbjct: 196 NAPTDHGLCIKPNKVRNETKELRLLCAEDEQTRTSWMTAFRLLKYGM 242
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain,
BAR-PH domain, protein transpo; 2.05A {Homo sapiens}
PDB: 2z0o_A 2elb_A
Length = 385
Score = 42.3 bits (98), Expect = 3e-05
Identities = 9/83 (10%), Positives = 30/83 (36%), Gaps = 7/83 (8%)
Query: 59 TNGWKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQVEYSEDQQAMVRVPFSFSVVT-- 116
++ W +++ + + + D +++ V + + + F + +
Sbjct: 294 SSTWDRQFYFTQGGN-LMSQARGDVAGGLAMDIDNCSVMAVDCEDR----RYCFQITSFD 348
Query: 117 KHGGYLMQTAGAREVHEWLYAIN 139
++Q ++ EW+ IN
Sbjct: 349 GKKSSILQAESKKDHEEWICTIN 371
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 41.6 bits (97), Expect = 4e-05
Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 10/115 (8%)
Query: 41 RISPVVSRKGYLNILEQK-TNGWKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQVEYS 99
++S ++GY+ K T G++KRW + + F+D D R V + + + Y+
Sbjct: 264 KLSRNYLKEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAFARGEVFIGSKESGYT 323
Query: 100 -----EDQQAMVRVPFSFSVVTKHGGYLMQTAGAREVHEWLYA----INPLLAGQ 145
P ++VT +L + EW+ A ++ + Q
Sbjct: 324 VLHGFPPSTQGHHWPHGITIVTPDRKFLFACETESDQREWVAAFQKAVDRPMLPQ 378
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, transferase; NMR {Homo sapiens}
Length = 164
Score = 40.9 bits (95), Expect = 4e-05
Identities = 11/104 (10%), Positives = 33/104 (31%), Gaps = 9/104 (8%)
Query: 46 VSRKGYLNILEQKTNG-----WKKRWVAVRRPYVFIFRDEK-DPVERALVNLATAQ-VEY 98
+ L Q+ +K+R + + + + + ++++ + VE
Sbjct: 15 TILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKKYRKGFIDVSKIKCVEI 74
Query: 99 --SEDQQAMVRVPFSFSVVTKHGGYLMQTAGAREVHEWLYAINP 140
++D + + F VV + + W+ +
Sbjct: 75 VKNDDGVIPCQNKYPFQVVHDANTLYIFAPSPQSRDLWVKKLKE 118
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 137
Score = 39.2 bits (91), Expect = 1e-04
Identities = 15/117 (12%), Positives = 40/117 (34%), Gaps = 8/117 (6%)
Query: 42 ISPVVSRKGYLNILEQKTN---GWKKRWVAVRRPYVFIFRDEKDPVE--RALVNLATAQV 96
S + K +L I + G+++ WV + + ++ + + +NL +V
Sbjct: 5 SSGIPELKDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAPGDPIQQLNLKGCEV 64
Query: 97 EYSEDQQAMVRVPFSFSVVTKHGG--YLMQTAGAREVHEWLYAINPLLAGQIRSKTS 151
+ + V + G ++ ++ W+ G+ + +S
Sbjct: 65 VPDVNVSGQ-KFCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLASKGRTMADSS 120
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology
domain, PKB, AKT, phosphoinositide,
serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo
sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A*
2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Length = 125
Score = 38.4 bits (89), Expect = 2e-04
Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 5/99 (5%)
Query: 46 VSRKGYLNILEQKTNGWKKRWVAVRRPYVFI-FRDEKDPVERALVNLATAQVEYSEDQQA 104
+ ++G+L+ + W+ R+ ++ FI +++ V++ L V + +
Sbjct: 8 IVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKT 67
Query: 105 MVRVPFSFSVVTKHG----GYLMQTAGAREVHEWLYAIN 139
P +F + E EW AI
Sbjct: 68 ERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQ 106
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Length = 125
Score = 38.1 bits (88), Expect = 2e-04
Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 8/102 (7%)
Query: 46 VSRKGYLNILE--QKTNGWKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQVEYSEDQQ 103
V RKG+L I G K+ W + + ++D+++ ++ ++++ ++ E
Sbjct: 12 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGF 71
Query: 104 AMVRVPF------SFSVVTKHGGYLMQTAGAREVHEWLYAIN 139
+ F +V + + EV W +
Sbjct: 72 MSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFL 113
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 112
Score = 37.6 bits (87), Expect = 3e-04
Identities = 14/93 (15%), Positives = 33/93 (35%), Gaps = 5/93 (5%)
Query: 50 GYLNILEQKTNGWKKRWVAVRR--PYV-FIFRDEKDPVERALVNLATAQVEYSEDQQAMV 106
G L + E W + W A+ P V + +D + L + ++ D + +
Sbjct: 12 GPLRLSE-SGETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLSV-PDPEERL 69
Query: 107 RVPFSFSVVTKHGGYLMQTAGAREVHEWLYAIN 139
+ + + + + A +WL ++
Sbjct: 70 DSGHVWKLQWAKQSWYLSASSAELQQQWLETLS 102
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein
binding, structural genomics, NPPSFA; 1.70A {Mus
musculus}
Length = 126
Score = 37.3 bits (86), Expect = 4e-04
Identities = 22/126 (17%), Positives = 38/126 (30%), Gaps = 22/126 (17%)
Query: 45 VVSRKGYLNILEQKTN-GWKKRWVAVRRPYVFIFRDEKDPVE---------RALVNLATA 94
+ RK L + W + WV + + + + V++
Sbjct: 6 PLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIVGW 65
Query: 95 QVEYSEDQQAMVRVPFSFSVVTKHGG--YLMQTAGAREVHEWLYAINPLLAGQIRSKTSR 152
V+ +D P F + G Y QT W ++ K+SR
Sbjct: 66 MVQLPDD----PEHPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDA------CKSSR 115
Query: 153 RQPPAS 158
Q PA+
Sbjct: 116 PQVPAN 121
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling
protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB:
3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Length = 120
Score = 37.3 bits (86), Expect = 4e-04
Identities = 14/109 (12%), Positives = 33/109 (30%), Gaps = 15/109 (13%)
Query: 48 RKGYLNILEQKTNGWKKRWVAVRRPYVFIFRDE---KDPVERALVNLATAQVEYSEDQQA 104
+ G+L + + K + + ++ F+ KD V + L+ V + +
Sbjct: 8 KSGFLERRSKFLKSYSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECTVTEHSRKNS 67
Query: 105 MVRVP-----FSFSVVTKHGG-------YLMQTAGAREVHEWLYAINPL 141
F + K G ++ + + W + L
Sbjct: 68 TSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKIL 116
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 9e-04
Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 25/131 (19%)
Query: 20 DSNEATQDTSVILYVPEIEEIRISP-VVSRKGYL-NILEQKTNGWKKRWV--AVRRPYVF 75
D + IL EI+ I +S VS L L K +++V +R Y F
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93
Query: 76 I---FRDE-KDPVERALVNLATAQVEYSEDQQAMVRVPFSFS--VVTKHGGYLMQTAGAR 129
+ + E + P + Y E + + F+ V++ YL
Sbjct: 94 LMSPIKTEQRQP--------SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL------- 138
Query: 130 EVHEWLYAINP 140
++ + L + P
Sbjct: 139 KLRQALLELRP 149
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide,
pleckst homology domain, guanine-nucleotide releasing
factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus
musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Length = 347
Score = 37.7 bits (87), Expect = 0.001
Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 18/112 (16%)
Query: 46 VSRKGYLNILEQKTNGWKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQVEYSEDQQ-- 103
R+G+L L + WK+RW + ++ F D R ++ L + ED +
Sbjct: 213 PDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRKP 272
Query: 104 ----------------AMVRVPFSFSVVTKHGGYLMQTAGAREVHEWLYAIN 139
A V H Y + E EW+ +I
Sbjct: 273 NCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIK 324
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport,
pleckstrin homology domain, phosphatidylinositol
binding, structural genomics; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 130
Score = 35.9 bits (82), Expect = 0.002
Identities = 13/85 (15%), Positives = 29/85 (34%), Gaps = 5/85 (5%)
Query: 43 SPVVSRKGYLNILEQKTNGWKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQVEYSEDQ 102
S + +L I + W K W ++ + I++ +K+ V L ++ +
Sbjct: 5 SSGIVMADWLKIRGTLKS-WTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACEIIERPSK 63
Query: 103 QAMVRVPFSFSVVTKHGGYLMQTAG 127
+ F F + + G
Sbjct: 64 ----KDGFCFKLFHPLEQSIWAVKG 84
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain,
zizimin1, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 150
Score = 36.1 bits (83), Expect = 0.002
Identities = 18/137 (13%), Positives = 47/137 (34%), Gaps = 24/137 (17%)
Query: 46 VSRKGYL------NILEQKTNGWKKRWVAVRRPYVFI------FRDEKDPVERALVNLAT 93
+++ G+L + + +K+R+ + + ++ + + L +
Sbjct: 18 ITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDS 77
Query: 94 AQVEYSEDQQAMVRVPFSFSVVTKHGG-YLMQTAGAREVHEWLYAINPLLAGQI------ 146
++ F+F + + YL+ E+ EW+ +N +L
Sbjct: 78 CMGVVQNNKVR----RFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQLNFEAAMQE 133
Query: 147 -RSKTSRRQPPASPALG 162
R+ S + P+ G
Sbjct: 134 KRNGDSHEDDESGPSSG 150
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK
repeat, cytoplasm, GTP-binding, GTPase activation,
metal-binding, nucleotide-binding; NMR {Homo sapiens}
Length = 128
Score = 33.3 bits (75), Expect = 0.012
Identities = 18/122 (14%), Positives = 34/122 (27%), Gaps = 25/122 (20%)
Query: 41 RISPVVSRKGYLNILEQKT--NGWKKRWVAVRRP----YVFIFRDEKDPVERALVNLATA 94
R P+ ++ +L + WKK++V + Y D ++L
Sbjct: 1 RAIPI--KQSFLLKRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRT 58
Query: 95 QVEYSEDQQAMVRVPFS-----------------FSVVTKHGGYLMQTAGAREVHEWLYA 137
V+ + F V + + + A E W+ A
Sbjct: 59 TVKVPGKRPPRAISAFGPSASGSAGQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQA 118
Query: 138 IN 139
I
Sbjct: 119 IE 120
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin
activation, cytoplas membrane, cell adhesion; HET: SRT;
1.90A {Homo sapiens} PDB: 2lko_A*
Length = 173
Score = 31.2 bits (70), Expect = 0.086
Identities = 18/141 (12%), Positives = 50/141 (35%), Gaps = 10/141 (7%)
Query: 20 DSNEATQDTSVILYVPEIEEIR--ISPVVSRKGYLNILEQKTN---GWKKRWVAVRRPYV 74
+ + A D + L + I I+ + Y+ + + K G+K+ W + +
Sbjct: 19 EVDAALSDLEITLEGGKTSTILGDITSIPELADYIKVFKPKKLTLKGYKQYWCTFKDTSI 78
Query: 75 FIFRDEKDPVERAL--VNLATAQVEYSEDQQAMVRVPFSFSVVTKHG--GYLMQTAGARE 130
++ +++ +NL +V + + + + G ++ ++
Sbjct: 79 SCYKSKEESSGTPAHQMNLRGCEVT-PDVNISGQKFNIKLLIPVAEGMNEIWLRCDNEKQ 137
Query: 131 VHEWLYAINPLLAGQIRSKTS 151
W+ A G+ + +S
Sbjct: 138 YAHWMAACRLASKGKTMADSS 158
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil,
cytoplasm, membrane, metal-binding, nucleotide-binding,
phorbol-ester binding; NMR {Rattus norvegicus}
Length = 117
Score = 30.4 bits (68), Expect = 0.12
Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 14/96 (14%)
Query: 58 KTNGWKKRWVAVRRPYVFIFRDEKDPVERALVNL--ATAQVEYSEDQQAMVR------VP 109
K GW K++V V + + E+D + + Q V +P
Sbjct: 16 KKFGWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDKLFHVRPVTQTDVYRADAKEIP 75
Query: 110 FSFSVVTKHGG------YLMQTAGAREVHEWLYAIN 139
F ++ + G L+ E +W+ +
Sbjct: 76 RIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLV 111
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc
binding, X-linked agammaglobulinemia, tyrosine-protein
kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A*
2z0p_A* 1bwn_A*
Length = 169
Score = 30.7 bits (68), Expect = 0.14
Identities = 12/107 (11%), Positives = 28/107 (26%), Gaps = 27/107 (25%)
Query: 62 WKKRWVAVRRPYVFIFRDEKDP-----------------VERA----------LVNLATA 94
+KK + + + + + VE +
Sbjct: 24 FKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRRGE 83
Query: 95 QVEYSEDQQAMVRVPFSFSVVTKHGGYLMQTAGAREVHEWLYAINPL 141
+ E + R P+ F VV G + + W++ + +
Sbjct: 84 ESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKRWIHQLKNV 130
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 30.7 bits (70), Expect = 0.24
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 13/65 (20%)
Query: 77 FRDEKDPVERALVNLATAQVEYSEDQQAMVRV---PFSFS-------VVTKHGGYLMQTA 126
+ +D ++ A+V + + E + + V PF+ + G + +
Sbjct: 367 RVENQDAIDAAMVGMLA---DPKEARAGIREVHFLPFNPVDKRTALTYIDGSGNWHRVSK 423
Query: 127 GAREV 131
GA E
Sbjct: 424 GAPEQ 428
>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein,
dimerization, SIG protein; HET: PTR; 2.60A {Mus
musculus}
Length = 224
Score = 30.2 bits (67), Expect = 0.29
Identities = 14/108 (12%), Positives = 39/108 (36%), Gaps = 11/108 (10%)
Query: 41 RISPVVSRKGYLNILEQKTNGWKKRWVAVRRP-------YVFIFRDEKDPV--ERALVNL 91
++ +G + + + K WK RW+ +R+P + +++D+ + R +L
Sbjct: 4 FMTEAALVEGQVKLRDGKK--WKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSL 61
Query: 92 ATAQVEYSEDQQAMVRVPFSFSVVTKHGGYLMQTAGAREVHEWLYAIN 139
+ E + + +++ ++ + W I
Sbjct: 62 TLEDICGLEPALPYEGLAHTLAIICLSQAVMLGFDSHEAMCAWDTRIR 109
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 30.4 bits (69), Expect = 0.32
Identities = 8/61 (13%), Positives = 15/61 (24%), Gaps = 10/61 (16%)
Query: 81 KDPVERALVNLATAQVEYSEDQQAMVRV---PFSFS-------VVTKHGGYLMQTAGARE 130
D +++A + + PF V + G + GA
Sbjct: 419 IDAIDKAFLKSLKYYPRAKSVLSKYKVLQFHPFDPVSKKVVAVVESPQGERITCVKGAPL 478
Query: 131 V 131
Sbjct: 479 F 479
>1jww_A Potential copper-transporting ATPase;
beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR
{Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Length = 80
Score = 28.4 bits (64), Expect = 0.39
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 84 VERALVNLAT--AQVEYSEDQ 102
V A VN A VEY+ +
Sbjct: 31 VANAPVNFALETVTVEYNPKE 51
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 127
Score = 28.9 bits (64), Expect = 0.42
Identities = 21/110 (19%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
Query: 42 ISPVVSRKGYLNILEQKTNG--WKKRWVAVRRPYVFIF----------RDEKDPVERALV 89
+ ++G+L + +Q+T G W++ ++ + + R ++
Sbjct: 8 MGDGAVKQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRRCEAARKVI 67
Query: 90 NLAT-AQVEYSEDQQAMVRVPFSFSVVTKHGGYLMQTAGAREVHEWLYAI 138
L+ +V + + + R +F + TK YL+ A A E +W+ AI
Sbjct: 68 RLSDCLRVAEAGGEASSPRDTSAFFLETKERLYLL-AAPAAERGDWVQAI 116
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold,
beta-alpha-beta-BETA-alpha-beta structure, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
1y3k_A
Length = 77
Score = 27.3 bits (61), Expect = 0.77
Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 2/21 (9%)
Query: 84 VERALVNLAT--AQVEYSEDQ 102
+ LV L A+V Y+
Sbjct: 31 IYSILVALMAGKAEVRYNPAV 51
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones,
hydrolase; NMR {Synechocystis SP}
Length = 71
Score = 27.3 bits (61), Expect = 0.87
Identities = 8/21 (38%), Positives = 9/21 (42%), Gaps = 2/21 (9%)
Query: 84 VERALVNLAT--AQVEYSEDQ 102
V A V +AT V Y Q
Sbjct: 31 VAEASVTVATGRLTVTYDPKQ 51
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.92
Identities = 4/25 (16%), Positives = 11/25 (44%), Gaps = 3/25 (12%)
Query: 145 QIRSKTSRRQ---PPASPALGPSST 166
++ + + ++PAL +T
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKAT 45
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation;
NMR {Enterococcus hirae} SCOP: d.58.17.1
Length = 68
Score = 26.9 bits (60), Expect = 0.93
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 84 VERALVNLAT--AQVEYSEDQ 102
V++ V L A V++ E
Sbjct: 28 VKKVKVQLKKEKAVVKFDEAN 48
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold,
ATP- binding, ethylene signaling pathway, hydrolase, ION
transport; 1.70A {Arabidopsis thaliana}
Length = 74
Score = 26.9 bits (60), Expect = 1.2
Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 2/21 (9%)
Query: 84 VERALVNLAT--AQVEYSEDQ 102
V +A V L A V + +
Sbjct: 30 VFKASVALLQNRADVVFDPNL 50
>2l3m_A Copper-ION-binding protein; structural genomics, center for
structural genomics of infec diseases, csgid, metal
binding protein; NMR {Bacillus anthracis}
Length = 71
Score = 26.5 bits (59), Expect = 1.3
Identities = 6/21 (28%), Positives = 8/21 (38%), Gaps = 2/21 (9%)
Query: 84 VERALVNLAT--AQVEYSEDQ 102
VE+ V LA +V
Sbjct: 33 VEQVKVQLAEGTVEVTIDSSV 53
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein
interaction, copper(I), metal homeostasis, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
1yjt_A 1yju_A 1yjv_A
Length = 75
Score = 26.5 bits (59), Expect = 1.4
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 84 VERALVNLAT--AQVEYSEDQ 102
+ V LAT A ++Y +
Sbjct: 32 ILYCSVALATNKAHIKYDPEI 52
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 28.1 bits (62), Expect = 1.7
Identities = 19/132 (14%), Positives = 36/132 (27%), Gaps = 18/132 (13%)
Query: 48 RKGYLNILEQKTNGWKKRWVAVRRPYVFIFRD-------EKDPVE-RALVNLATAQV-EY 98
G L I + R Y F+ D + + VNL + QV +
Sbjct: 408 IDGELKITSVERRSKMDR-------YAFLLDKALLICKRRGDSYDLKDFVNLHSFQVRDD 460
Query: 99 SEDQQAMVRVPFSFSVVTKHGG--YLMQTAGAREVHEWLYAINPLLAGQIRSKTSRRQPP 156
S + + F ++ G Y + +W+ ++ +
Sbjct: 461 SSGDRDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIYPENATANGHD 520
Query: 157 ASPALGPSSTQC 168
+T C
Sbjct: 521 FQMFSFEETTSC 532
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold,
beta-alpha-beta-BETA-alpha-beta, struc genomics,
hydrolase, membrane protein; NMR {Synechocystis SP} PDB:
2ofh_X
Length = 111
Score = 27.1 bits (60), Expect = 1.7
Identities = 8/21 (38%), Positives = 9/21 (42%), Gaps = 2/21 (9%)
Query: 84 VERALVNLAT--AQVEYSEDQ 102
V A V +AT V Y Q
Sbjct: 36 VAEASVTVATGRLTVTYDPKQ 56
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab
fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1
PDB: 1oq3_A 1oq6_A
Length = 76
Score = 26.2 bits (58), Expect = 1.8
Identities = 9/21 (42%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 84 VERALVNLAT--AQVEYSEDQ 102
V A VNLAT V Y +
Sbjct: 34 VTDANVNLATETVNVIYDPAE 54
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain,
hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB:
2aw0_A
Length = 72
Score = 26.1 bits (58), Expect = 1.8
Identities = 7/21 (33%), Positives = 9/21 (42%), Gaps = 2/21 (9%)
Query: 84 VERALVNLAT--AQVEYSEDQ 102
V+ V+LA VEY
Sbjct: 31 VKSIRVSLANSNGTVEYDPLL 51
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha-
beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1
PDB: 1mwz_A
Length = 73
Score = 26.2 bits (58), Expect = 1.9
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 84 VERALVNLAT--AQVEYSEDQQAMVR 107
V + V AT V+ D +A V
Sbjct: 31 VNQVQVLFATEKLVVDADNDIRAQVE 56
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo
sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Length = 84
Score = 26.2 bits (58), Expect = 2.4
Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 2/21 (9%)
Query: 84 VERALVNLAT--AQVEYSEDQ 102
V+R V+L A + Y
Sbjct: 37 VQRIKVSLDNQEATIVYQPHL 57
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR
{Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A
2ggp_B
Length = 72
Score = 25.7 bits (57), Expect = 2.8
Identities = 6/20 (30%), Positives = 10/20 (50%), Gaps = 2/20 (10%)
Query: 84 VERALVNLAT--AQVEYSED 101
V + ++L T QV Y +
Sbjct: 30 VTKCDISLVTNECQVTYDNE 49
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like
fold, structural genomics, structural proteomics in
europe, spine, hydrolase; NMR {Homo sapiens}
Length = 149
Score = 26.5 bits (59), Expect = 3.1
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 84 VERALVNLAT--AQVEYSEDQ 102
V LV L A+++Y +
Sbjct: 32 VLSVLVALMAGKAEIKYDPEV 52
Score = 25.4 bits (56), Expect = 8.8
Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 84 VERALVNLAT--AQVEYSEDQ 102
+ A V LAT A V++ +
Sbjct: 108 ITYASVALATSKALVKFDPEI 128
>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold,
beta-alpha-beta-BETA-alpha-beta, metal binding protein,
hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A
Length = 71
Score = 25.5 bits (56), Expect = 3.3
Identities = 6/27 (22%), Positives = 9/27 (33%), Gaps = 2/27 (7%)
Query: 84 VERALVNLAT--AQVEYSEDQQAMVRV 108
V A+VN V Q + +
Sbjct: 31 VTEAIVNFGASKITVTGEASIQQVEQA 57
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure,
structural genomics, structural proteomics in europe,
spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Length = 90
Score = 25.9 bits (57), Expect = 3.3
Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 2/21 (9%)
Query: 84 VERALVNLAT--AQVEYSEDQ 102
V +V+L A V Y+
Sbjct: 31 VSSIVVSLENRSAIVVYNASS 51
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding
protein, perisplasm, structural genomics; 2.00A
{Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A
1afj_A 2hqi_A
Length = 72
Score = 25.3 bits (56), Expect = 3.4
Identities = 5/21 (23%), Positives = 9/21 (42%), Gaps = 2/21 (9%)
Query: 84 VERALVNLAT--AQVEYSEDQ 102
V + V T A V + + +
Sbjct: 31 VSKVDVTFETRQAVVTFDDAK 51
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 723
Score = 27.1 bits (61), Expect = 3.7
Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
Query: 84 VERALVNLAT--AQVEYSEDQ 102
VE VNLAT A + + E +
Sbjct: 30 VEEVRVNLATETAFIRFDEKR 50
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist
metal-binding, oxidoreductase; NMR {Pseudomonas
aeruginosa} PDB: 2kt3_A
Length = 69
Score = 25.0 bits (55), Expect = 4.2
Identities = 6/20 (30%), Positives = 9/20 (45%), Gaps = 2/20 (10%)
Query: 84 VERALVNLAT--AQVEYSED 101
V+ ALV+ AQ+
Sbjct: 28 VQSALVSYPKGTAQLAIVPG 47
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding,
trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Length = 71
Score = 25.0 bits (55), Expect = 4.4
Identities = 7/20 (35%), Positives = 9/20 (45%), Gaps = 2/20 (10%)
Query: 84 VERALVNLAT--AQVEYSED 101
V+ VN A A V Y +
Sbjct: 31 VQSCQVNFALEQAVVSYHGE 50
>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics,
niaid, national institute of allergy AN infectious
diseases; 1.75A {Burkholderia thailandensis}
Length = 432
Score = 26.7 bits (59), Expect = 4.5
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 54 ILEQKTNGWKKRWVAVRRPYVFIFRDEKDPVERALVNLAT------AQVEYSEDQQAMVR 107
++ ++ GW +R V++ F+F D LA E + A VR
Sbjct: 224 LVAKQARGWCERGVSIDDAGAFVFADRPFARAEEAARLAGIDADEGYVTETHDAAVAFVR 283
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal
binding domain, domain SWAP, ATP-BI cell membrane,
copper transport; HET: CIT; 2.00A {Archaeoglobus
fulgidus}
Length = 73
Score = 25.0 bits (55), Expect = 4.7
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 80 EKDPVERALVNLATAQVEYS-EDQQAMVR 107
E+ + V+L A V + ED ++
Sbjct: 28 EEAGAKVEKVDLNEAVVAGNKEDVDKYIK 56
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase,
water-soluble region, beta-alpha-beta- beta-alpha-beta
fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1
PDB: 2rml_A
Length = 151
Score = 26.2 bits (58), Expect = 4.7
Identities = 9/21 (42%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 84 VERALVNLAT--AQVEYSEDQ 102
V A VNLAT V Y +
Sbjct: 34 VTDANVNLATETVNVIYDPAE 54
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A
{Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Length = 352
Score = 26.5 bits (58), Expect = 4.9
Identities = 10/68 (14%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 51 YLNILEQKTNGWKKRWVAVRRPYVFIFRDEKDPVERALVNLATAQVEYSEDQQAMVRVPF 110
YL + + ++ R F+++ DP++R L+ L + + + + +
Sbjct: 260 YLKMNITVPEDYINGFI--RANNTFLYQLVFDPIKRKLIPLNAYEDDVDPE-----TLSY 312
Query: 111 SFSVVTKH 118
+ V
Sbjct: 313 AGQYVDDS 320
>3k6q_A Putative ligand binding protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 1.80A {Syntrophomonas wolfei subsp}
Length = 139
Score = 25.9 bits (56), Expect = 5.1
Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 80 EKDPVERALVNLATAQVEYSEDQQAMVRVPFSFSVVTKHGGYLMQTAGAR---EVHEWLY 136
+ + + LA +EY++D ++ ++ H Y+++ + EV ++Y
Sbjct: 76 SGESEQEVIQKLAEDLLEYAQDYMNDFKLFYNAPNRKTHYPYILKVLLSSNIDEVKGYIY 135
Query: 137 A 137
A
Sbjct: 136 A 136
>2arh_A Hypothetical protein AQ_1966; structural genomics, PSI, protein
STRU initiative, midwest center for structural genomics,
MCSG, U function; 2.46A {Aquifex aeolicus} SCOP:
d.108.1.9
Length = 203
Score = 25.9 bits (56), Expect = 5.8
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 5/60 (8%)
Query: 82 DPVERALVNLATAQ-----VEYSEDQQAMVRVPFSFSVVTKHGGYLMQTAGAREVHEWLY 136
ER L + VEY ED++ + G+ + G +W
Sbjct: 82 SEAERKLYEFLSEHFGRIFVEYFEDKETTYELQKGVPPALSRLGFELLKLGYTYFRDWFI 141
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding,
metal selectivity, ferredoxin fold, ATP-binding,
hydrolase; NMR {Arabidopsis thaliana}
Length = 95
Score = 24.7 bits (54), Expect = 8.4
Identities = 3/21 (14%), Positives = 7/21 (33%), Gaps = 2/21 (9%)
Query: 84 VERALVNLAT--AQVEYSEDQ 102
V+ V + + V +
Sbjct: 44 VKEYSVIVPSRTVIVVHDSLL 64
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.386
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,558,296
Number of extensions: 143485
Number of successful extensions: 407
Number of sequences better than 10.0: 1
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 101
Length of query: 171
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 84
Effective length of database: 4,272,666
Effective search space: 358903944
Effective search space used: 358903944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.1 bits)