Query psy7934
Match_columns 138
No_of_seqs 94 out of 96
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 22:35:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7934.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7934hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eqr_A N-COR1, N-COR, nuclear 44.0 21 0.00072 22.2 3.1 28 29-57 12-39 (61)
2 2cqq_A RSGI RUH-037, DNAJ homo 30.8 68 0.0023 20.8 4.0 49 29-80 8-59 (72)
3 3ff5_A PEX14P, peroxisomal bio 29.9 3.8 0.00013 26.2 -2.2 32 51-82 4-36 (54)
4 2iw5_B Protein corest, REST co 28.8 42 0.0014 27.2 3.2 32 27-59 131-162 (235)
5 2le3_A Carnitine O-palmitoyltr 27.2 21 0.00073 21.7 1.0 12 80-91 8-19 (42)
6 1euh_A NADP dependent non phos 27.0 84 0.0029 26.5 5.0 45 36-80 45-94 (475)
7 3sza_A Aldehyde dehydrogenase, 26.8 87 0.003 26.5 5.1 47 34-80 21-72 (469)
8 2j6l_A Aldehyde dehydrogenase 26.8 81 0.0028 26.9 4.9 43 36-80 64-113 (500)
9 2yus_A SWI/SNF-related matrix- 26.1 51 0.0017 21.7 2.8 30 29-59 18-47 (79)
10 4h7n_A Aldehyde dehydrogenase; 25.8 64 0.0022 27.2 4.0 44 33-78 30-80 (474)
11 2w8n_A Succinate-semialdehyde 25.2 94 0.0032 26.4 5.0 43 36-80 53-102 (487)
12 2elk_A SPCC24B10.08C protein; 23.6 71 0.0024 19.4 3.0 30 30-59 10-39 (58)
13 1x41_A Transcriptional adaptor 22.2 75 0.0026 19.3 2.9 30 30-59 9-38 (60)
14 2yqk_A Arginine-glutamic acid 21.4 72 0.0025 19.9 2.7 28 29-57 9-36 (63)
15 3r31_A BADH, betaine aldehyde 21.4 1.2E+02 0.0042 26.0 5.0 42 36-79 57-105 (517)
16 2wme_A BADH, betaine aldehyde 21.2 1.3E+02 0.0043 25.8 5.0 44 37-80 50-98 (490)
17 2yum_A ZZZ3 protein, zinc fing 20.7 54 0.0018 20.7 2.0 30 30-59 9-43 (75)
18 1y4m_A HERV-FRD_6P24.1 proviru 20.7 40 0.0014 21.4 1.3 17 50-66 14-30 (53)
19 4e4g_A Methylmalonate-semialde 20.4 1.3E+02 0.0045 25.9 5.0 41 37-79 70-117 (521)
No 1
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.01 E-value=21 Score=22.20 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHHHHHhchhcCCccHHH
Q psy7934 29 ECTWTEREFALAAWAFRKWKYHQFTSLRD 57 (138)
Q Consensus 29 ~~~~s~rE~~lar~a~~kWk~~~~~smaE 57 (138)
..+||++|.++...++.+-- .+|..+|.
T Consensus 12 ~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~ 39 (61)
T 2eqr_A 12 MNVWTDHEKEIFKDKFIQHP-KNFGLIAS 39 (61)
T ss_dssp CCSCCHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC-CCHHHHHH
Confidence 45799999999999999876 47877773
No 2
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=30.76 E-value=68 Score=20.84 Aligned_cols=49 Identities=18% Similarity=0.367 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHHHHHhch---hcCCccHHHHHHhhhhhHHHHHHHHHHhccce
Q psy7934 29 ECTWTEREFALAAWAFRKWK---YHQFTSLRDDLWGNAIFLKEANAISVELKKKV 80 (138)
Q Consensus 29 ~~~~s~rE~~lar~a~~kWk---~~~~~smaE~ll~nAv~LKEAN~iS~EL~K~V 80 (138)
...||++|..+..+|+.+.- -.|...+|+.+ + =..+|----.++|.+.|
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-g--Rt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-G--RSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-T--SCHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-C--CCHHHHHHHHHHHHHhc
Confidence 34799999999999998875 35678889886 3 35666666677777764
No 3
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=29.93 E-value=3.8 Score=26.22 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=22.8
Q ss_pred CCccHHHHHHhhhh-hHHHHHHHHHHhccceee
Q psy7934 51 QFTSLRDDLWGNAI-FLKEANAISVELKKKVQF 82 (138)
Q Consensus 51 ~~~smaE~ll~nAv-~LKEAN~iS~EL~K~V~f 82 (138)
+-.+.+|+++++|+ ||+.-++-+--+.+++.|
T Consensus 4 ~~~~~Re~li~~Av~FL~dp~V~~sp~~~K~~F 36 (54)
T 3ff5_A 4 GSPEFREPLIATAVKFLQNSRVRQSPLATRRAF 36 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTGGGSCHHHHHHH
T ss_pred CCCccHHHHHHHHHHHhCChhhhcCCHHHHHHH
Confidence 34567899999997 777777766666666555
No 4
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=28.83 E-value=42 Score=27.18 Aligned_cols=32 Identities=31% Similarity=0.562 Sum_probs=26.8
Q ss_pred cCCCCCCHHHHHHHHHHHHhchhcCCccHHHHH
Q psy7934 27 DAECTWTEREFALAAWAFRKWKYHQFTSLRDDL 59 (138)
Q Consensus 27 ~~~~~~s~rE~~lar~a~~kWk~~~~~smaE~l 59 (138)
+....||++|.+++..|+++.- ..|..+|+.|
T Consensus 131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~V 162 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVI 162 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHc
Confidence 3356899999999999999985 5788898875
No 5
>2le3_A Carnitine O-palmitoyltransferase 1, liver isoform; membrane protein, amphiphilic structure, membrane-protein interaction, structural switch; NMR {Homo sapiens}
Probab=27.20 E-value=21 Score=21.71 Aligned_cols=12 Identities=50% Similarity=0.816 Sum_probs=9.8
Q ss_pred eeeeEEEeeCCC
Q psy7934 80 VQFQFTLLTDTL 91 (138)
Q Consensus 80 V~fQF~lv~~~~ 91 (138)
|.|||+|-.+|.
T Consensus 8 Vaf~ftvt~eG~ 19 (42)
T 2le3_A 8 VAFQFTVTPDGI 19 (42)
T ss_dssp CSEEEEEETTEE
T ss_pred heeeeeecCCCc
Confidence 789999887764
No 6
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase; 1.82A {Streptococcus mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A* 2qe0_A* 2esd_A* 1qi1_A*
Probab=26.98 E-value=84 Score=26.49 Aligned_cols=45 Identities=22% Similarity=0.176 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhchhcCCccHHHHHHhhhhhHHH-----HHHHHHHhccce
Q psy7934 36 EFALAAWAFRKWKYHQFTSLRDDLWGNAIFLKE-----ANAISVELKKKV 80 (138)
Q Consensus 36 E~~lar~a~~kWk~~~~~smaE~ll~nAv~LKE-----AN~iS~EL~K~V 80 (138)
-++-|+.|+..|+......=++.|..-|-.|++ |.+++.|++|..
T Consensus 45 av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 94 (475)
T 1euh_A 45 VYASAKKAQPAWRALSYIERAAYLHKVADILMRDKEKIGAILSKEVAKGY 94 (475)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH
Confidence 366789999999876544333444444444433 456677777743
No 7
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann fold, oxidoreductase; 1.48A {Homo sapiens} SCOP: c.82.1.1 PDB: 3szb_A* 1ad3_A*
Probab=26.84 E-value=87 Score=26.50 Aligned_cols=47 Identities=17% Similarity=0.144 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhchhcCCccHHHHHHhhhhhHHH-----HHHHHHHhccce
Q psy7934 34 EREFALAAWAFRKWKYHQFTSLRDDLWGNAIFLKE-----ANAISVELKKKV 80 (138)
Q Consensus 34 ~rE~~lar~a~~kWk~~~~~smaE~ll~nAv~LKE-----AN~iS~EL~K~V 80 (138)
++-++-|+.|++.|+......=++.|..=|-.|+| |.+++.|++|..
T Consensus 21 ~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 72 (469)
T 3sza_A 21 SEAVKRARAAFSSGRTRPLQFRIQQLEALQRLIQEQEQELVGALAADLHKNE 72 (469)
T ss_dssp HHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH
Confidence 34467889999999875443222333333333333 455677777754
No 8
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase, oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo sapiens} PDB: 2jg7_A*
Probab=26.83 E-value=81 Score=26.89 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhchhcCC-------ccHHHHHHhhhhhHHHHHHHHHHhccce
Q psy7934 36 EFALAAWAFRKWKYHQF-------TSLRDDLWGNAIFLKEANAISVELKKKV 80 (138)
Q Consensus 36 E~~lar~a~~kWk~~~~-------~smaE~ll~nAv~LKEAN~iS~EL~K~V 80 (138)
-++-|+.|+..|+.... .++++.|-.|+-.| |+.++.|++|..
T Consensus 64 av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el--a~~~~~e~Gk~~ 113 (500)
T 2j6l_A 64 TVKKAREAWKIWADIPAPKRGEIVRQIGDALREKIQVL--GSLVSLEMGKIL 113 (500)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHH--HHHHHHHTCCCH
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHcCCCH
Confidence 35678999999976544 44555555555544 678888888764
No 9
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=26.05 E-value=51 Score=21.70 Aligned_cols=30 Identities=23% Similarity=0.433 Sum_probs=24.8
Q ss_pred CCCCCHHHHHHHHHHHHhchhcCCccHHHHH
Q psy7934 29 ECTWTEREFALAAWAFRKWKYHQFTSLRDDL 59 (138)
Q Consensus 29 ~~~~s~rE~~lar~a~~kWk~~~~~smaE~l 59 (138)
..+||++|-.+...++.+.- .+...+|+.|
T Consensus 18 ~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v 47 (79)
T 2yus_A 18 GREWTEQETLLLLEALEMYK-DDWNKVSEHV 47 (79)
T ss_dssp SCCCCHHHHHHHHHHHHHSS-SCHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhC-CCHHHHHHHc
Confidence 45899999999999999877 6777777765
No 10
>4h7n_A Aldehyde dehydrogenase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ALDH_ddaldh, COG1012, glyco_hydro_97; 2.00A {Anabaena variabilis}
Probab=25.78 E-value=64 Score=27.25 Aligned_cols=44 Identities=11% Similarity=0.179 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHhchhcC-------CccHHHHHHhhhhhHHHHHHHHHHhcc
Q psy7934 33 TEREFALAAWAFRKWKYHQ-------FTSLRDDLWGNAIFLKEANAISVELKK 78 (138)
Q Consensus 33 s~rE~~lar~a~~kWk~~~-------~~smaE~ll~nAv~LKEAN~iS~EL~K 78 (138)
.++-.+-|+.|++.|+... ..++++.|..|+--| |.+++.|++|
T Consensus 30 v~~av~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~el--a~~~~~e~Gk 80 (474)
T 4h7n_A 30 LAQQCNRARRAQSRWQELGVEGRITTLQQWKQAILSRREQL--TEALVNDTGR 80 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTHHHH--HHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHcCC
Confidence 3455778899999998643 335556666666555 5667788877
No 11
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A*
Probab=25.21 E-value=94 Score=26.41 Aligned_cols=43 Identities=23% Similarity=0.169 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhchhcCCc-------cHHHHHHhhhhhHHHHHHHHHHhccce
Q psy7934 36 EFALAAWAFRKWKYHQFT-------SLRDDLWGNAIFLKEANAISVELKKKV 80 (138)
Q Consensus 36 E~~lar~a~~kWk~~~~~-------smaE~ll~nAv~LKEAN~iS~EL~K~V 80 (138)
-++-|+.|++.|+..... ++++.|-.|+-.| |.+++.|++|..
T Consensus 53 av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el--a~~~~~e~Gk~~ 102 (487)
T 2w8n_A 53 AVRAAYEAFCRWREVSAKERSSLLRKWYNLMIQNKDDL--ARIITAESGKPL 102 (487)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHH--HHHHHHHHCCCH
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCCCH
Confidence 356688999999875543 3444444444443 455667777754
No 12
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=23.59 E-value=71 Score=19.42 Aligned_cols=30 Identities=17% Similarity=0.178 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHHHHHHhchhcCCccHHHHH
Q psy7934 30 CTWTEREFALAAWAFRKWKYHQFTSLRDDL 59 (138)
Q Consensus 30 ~~~s~rE~~lar~a~~kWk~~~~~smaE~l 59 (138)
.+||++|-++...++.+--..+...+|+.+
T Consensus 10 ~~WT~eED~~L~~~v~~~G~~~W~~IA~~~ 39 (58)
T 2elk_A 10 ENWGADEELLLIDACETLGLGNWADIADYV 39 (58)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 469999999999999876655666777655
No 13
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=22.18 E-value=75 Score=19.34 Aligned_cols=30 Identities=13% Similarity=0.252 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHHHHHhchhcCCccHHHHH
Q psy7934 30 CTWTEREFALAAWAFRKWKYHQFTSLRDDL 59 (138)
Q Consensus 30 ~~~s~rE~~lar~a~~kWk~~~~~smaE~l 59 (138)
.+||++|-++...++.+--..+...+|+.+
T Consensus 9 ~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~ 38 (60)
T 1x41_A 9 PSWTAQEEMALLEAVMDCGFGNWQDVANQM 38 (60)
T ss_dssp SSSCHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcCcHHHHHHHh
Confidence 479999999999998776555566677655
No 14
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.44 E-value=72 Score=19.91 Aligned_cols=28 Identities=29% Similarity=0.461 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHHHHHHhchhcCCccHHH
Q psy7934 29 ECTWTEREFALAAWAFRKWKYHQFTSLRD 57 (138)
Q Consensus 29 ~~~~s~rE~~lar~a~~kWk~~~~~smaE 57 (138)
...||++|.++...++.+--. +|..++.
T Consensus 9 ~~~WT~eE~~~Fe~~l~~yGK-df~~I~~ 36 (63)
T 2yqk_A 9 EKCWTEDEVKRFVKGLRQYGK-NFFRIRK 36 (63)
T ss_dssp CCSCCHHHHHHHHHHHHHTCS-CHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhCc-cHHHHHH
Confidence 458999999999999887655 4555554
No 15
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Probab=21.44 E-value=1.2e+02 Score=26.04 Aligned_cols=42 Identities=17% Similarity=0.108 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhchhcCC-------ccHHHHHHhhhhhHHHHHHHHHHhccc
Q psy7934 36 EFALAAWAFRKWKYHQF-------TSLRDDLWGNAIFLKEANAISVELKKK 79 (138)
Q Consensus 36 E~~lar~a~~kWk~~~~-------~smaE~ll~nAv~LKEAN~iS~EL~K~ 79 (138)
-++-|+.|+..|+.... .++++.|-.|+-.| |.+++.|++|.
T Consensus 57 av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el--a~~~~~e~Gk~ 105 (517)
T 3r31_A 57 AIASAKRAQKEWAAMSPMARGRILKRAADIMRERNDAL--STLETLDTGKP 105 (517)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHH--HHHHHHHHCCC
T ss_pred HHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCCC
Confidence 35678999999987554 34555555555444 34556666664
No 16
>2wme_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wox_A* 3zqa_A* 2xdr_A*
Probab=21.16 E-value=1.3e+02 Score=25.81 Aligned_cols=44 Identities=16% Similarity=0.085 Sum_probs=27.2
Q ss_pred HHHHHHHHHhchhcCCccHHHHHHhhhhhHHH-----HHHHHHHhccce
Q psy7934 37 FALAAWAFRKWKYHQFTSLRDDLWGNAIFLKE-----ANAISVELKKKV 80 (138)
Q Consensus 37 ~~lar~a~~kWk~~~~~smaE~ll~nAv~LKE-----AN~iS~EL~K~V 80 (138)
++-|+.|+..|+..-...=++.|..=|-.|+| |.+++.|++|.+
T Consensus 50 v~aA~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 98 (490)
T 2wme_A 50 VQSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPL 98 (490)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH
Confidence 56678999999876544333334333333333 556788888754
No 17
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.71 E-value=54 Score=20.72 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHHHHhchh-----cCCccHHHHH
Q psy7934 30 CTWTEREFALAAWAFRKWKY-----HQFTSLRDDL 59 (138)
Q Consensus 30 ~~~s~rE~~lar~a~~kWk~-----~~~~smaE~l 59 (138)
..||++|-++...++.+--. .+...+|+.|
T Consensus 9 ~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~ 43 (75)
T 2yum_A 9 QLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADEL 43 (75)
T ss_dssp SCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHh
Confidence 37999999999999887653 5566677665
No 18
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=20.71 E-value=40 Score=21.39 Aligned_cols=17 Identities=29% Similarity=0.124 Sum_probs=13.9
Q ss_pred cCCccHHHHHHhhhhhH
Q psy7934 50 HQFTSLRDDLWGNAIFL 66 (138)
Q Consensus 50 ~~~~smaE~ll~nAv~L 66 (138)
.+-+|+|+.+|||.--|
T Consensus 14 ~ql~sla~vvlQNRraL 30 (53)
T 1y4m_A 14 EQIDSLAAVVLQNRRGL 30 (53)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36689999999998654
No 19
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=20.39 E-value=1.3e+02 Score=25.85 Aligned_cols=41 Identities=24% Similarity=0.094 Sum_probs=24.9
Q ss_pred HHHHHHHHHhchhcCCc-------cHHHHHHhhhhhHHHHHHHHHHhccc
Q psy7934 37 FALAAWAFRKWKYHQFT-------SLRDDLWGNAIFLKEANAISVELKKK 79 (138)
Q Consensus 37 ~~lar~a~~kWk~~~~~-------smaE~ll~nAv~LKEAN~iS~EL~K~ 79 (138)
++-|+.|+..|+..... ++++.|-.|+-.|- .+++.|++|.
T Consensus 70 v~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela--~~~~~e~Gk~ 117 (521)
T 4e4g_A 70 VESAKAAQPKWAATNPQRRARVFMKFVQLLNDNMNELA--EMLSREHGKT 117 (521)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHCSC
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhCCC
Confidence 56789999999875543 44455555544443 3456666664
Done!