Query psy7934
Match_columns 138
No_of_seqs 94 out of 96
Neff 4.4
Searched_HMMs 13730
Date Fri Aug 16 22:35:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7934.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7934hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bf5a1 a.47.1.1 (A:136-316) S 67.2 2.4 0.00017 30.9 3.7 39 37-75 94-151 (181)
2 d2iw5b1 a.4.1.3 (B:376-440) RE 56.2 5.6 0.00041 23.5 3.4 32 27-59 3-34 (65)
3 d2cqqa1 a.4.1.3 (A:8-66) DnaJ 52.9 7.7 0.00056 23.4 3.7 47 31-80 3-52 (59)
4 d1x41a1 a.4.1.1 (A:8-54) Trans 51.3 7.1 0.00052 22.0 3.1 30 30-59 2-31 (47)
5 d1ad3a_ c.82.1.1 (A:) Aldehyde 36.6 25 0.0018 27.4 5.3 43 35-79 4-53 (446)
6 d1o20a_ c.82.1.1 (A:) Gamma-gl 35.7 21 0.0016 27.2 4.7 43 36-78 6-53 (414)
7 d1bg1a1 a.47.1.1 (A:136-321) S 26.1 18 0.0013 26.1 2.4 25 52-76 132-156 (186)
8 d2cu7a1 a.4.1.3 (A:8-72) MYSM1 24.6 30 0.0022 19.9 2.9 29 30-59 3-31 (65)
9 d1xc5a1 a.4.1.3 (A:413-480) Nu 24.3 19 0.0014 21.2 2.0 30 29-59 17-46 (68)
10 d1gvda_ a.4.1.3 (A:) c-Myb, DN 23.2 13 0.00097 21.1 1.0 28 31-58 5-32 (52)
11 d2crga1 a.4.1.3 (A:8-64) Metas 23.1 14 0.001 21.5 1.1 31 31-62 3-33 (57)
12 d1kapp2 d.92.1.6 (P:1-246) Met 21.0 33 0.0024 24.5 3.1 30 27-56 83-112 (246)
13 d2aa1b1 a.1.1.2 (B:1-146) Hemo 20.3 31 0.0022 22.5 2.6 18 30-47 1-18 (146)
No 1
>d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=67.17 E-value=2.4 Score=30.92 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=33.0
Q ss_pred HHHHHHHHHhchhcC-------------------CccHHHHHHhhhhhHHHHHHHHHH
Q psy7934 37 FALAAWAFRKWKYHQ-------------------FTSLRDDLWGNAIFLKEANAISVE 75 (138)
Q Consensus 37 ~~lar~a~~kWk~~~-------------------~~smaE~ll~nAv~LKEAN~iS~E 75 (138)
..++..-+..||+++ |+++||.+|++.-.||++.-+..-
T Consensus 94 ~~ll~~eL~eWKr~QQ~a~iG~p~~~~LdqLQ~W~e~lae~l~q~rqqlkkl~el~~k 151 (181)
T d1bf5a1 94 NALINDELVEWKRRQQSACIGGPPNACLDQLQNWFTIVAESLQQVRQQLKKLEELEQK 151 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788999886 899999999999999999877654
No 2
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.20 E-value=5.6 Score=23.52 Aligned_cols=32 Identities=31% Similarity=0.562 Sum_probs=25.7
Q ss_pred cCCCCCCHHHHHHHHHHHHhchhcCCccHHHHH
Q psy7934 27 DAECTWTEREFALAAWAFRKWKYHQFTSLRDDL 59 (138)
Q Consensus 27 ~~~~~~s~rE~~lar~a~~kWk~~~~~smaE~l 59 (138)
+..+.||+.|..+...++.+-- .++..+|+.+
T Consensus 3 k~~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~ 34 (65)
T d2iw5b1 3 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVI 34 (65)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhC-chHHHHHHHc
Confidence 3467899999999999988776 4688888754
No 3
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.87 E-value=7.7 Score=23.36 Aligned_cols=47 Identities=19% Similarity=0.404 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHhch---hcCCccHHHHHHhhhhhHHHHHHHHHHhccce
Q psy7934 31 TWTEREFALAAWAFRKWK---YHQFTSLRDDLWGNAIFLKEANAISVELKKKV 80 (138)
Q Consensus 31 ~~s~rE~~lar~a~~kWk---~~~~~smaE~ll~nAv~LKEAN~iS~EL~K~V 80 (138)
.||+.|..+..+|+.+-. ..|...+|+.| + =..+|--...++|...+
T Consensus 3 eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-g--kt~~ev~~~~k~l~e~~ 52 (59)
T d2cqqa1 3 EWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-G--RSVTDVTTKAKQLKDSV 52 (59)
T ss_dssp CCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-T--SCHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-C--CCHHHHHHHHHHHHHhc
Confidence 699999999999998875 35678889888 4 34678777888887765
No 4
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.33 E-value=7.1 Score=21.96 Aligned_cols=30 Identities=13% Similarity=0.252 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHHHHhchhcCCccHHHHH
Q psy7934 30 CTWTEREFALAAWAFRKWKYHQFTSLRDDL 59 (138)
Q Consensus 30 ~~~s~rE~~lar~a~~kWk~~~~~smaE~l 59 (138)
+.||++|-.+...++.+=-..+...+|+.|
T Consensus 2 ~~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~ 31 (47)
T d1x41a1 2 PSWTAQEEMALLEAVMDCGFGNWQDVANQM 31 (47)
T ss_dssp SSSCHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHCCccHHHHHHHc
Confidence 469999999999999876555677777654
No 5
>d1ad3a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=36.56 E-value=25 Score=27.35 Aligned_cols=43 Identities=21% Similarity=0.163 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhchhcCC-------ccHHHHHHhhhhhHHHHHHHHHHhccc
Q psy7934 35 REFALAAWAFRKWKYHQF-------TSLRDDLWGNAIFLKEANAISVELKKK 79 (138)
Q Consensus 35 rE~~lar~a~~kWk~~~~-------~smaE~ll~nAv~LKEAN~iS~EL~K~ 79 (138)
+-++-||.||..|+..-. -++++.|-.|+-.|-+ +++.|++|.
T Consensus 4 ~av~~Ar~Af~~w~~~s~~~R~~iL~~~a~~l~~~~~~l~~--~~~~e~GK~ 53 (446)
T d1ad3a_ 4 DTVKRAREAFNSGKTRSLQFRIQQLEALQRMINENLKSISG--ALASDLGKN 53 (446)
T ss_dssp HHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHCCC
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHCHHHHHH--HHHHHcCCC
Confidence 457889999999986543 3566666666666644 567788773
No 6
>d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Thermotoga maritima [TaxId: 2336]}
Probab=35.68 E-value=21 Score=27.17 Aligned_cols=43 Identities=14% Similarity=0.023 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhchhcCCccHHHHHHhhhhhHHH-----HHHHHHHhcc
Q psy7934 36 EFALAAWAFRKWKYHQFTSLRDDLWGNAIFLKE-----ANAISVELKK 78 (138)
Q Consensus 36 E~~lar~a~~kWk~~~~~smaE~ll~nAv~LKE-----AN~iS~EL~K 78 (138)
-.+-|++|++.|+..-.-.=++.|.+-|-.|+| |.+|+.|++|
T Consensus 6 a~~~A~~Af~~w~~~s~~eR~~iL~k~a~~l~~~~~eia~~~~~e~gk 53 (414)
T d1o20a_ 6 KAKKVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEK 53 (414)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 456789999999887654433444444444433 3345556655
No 7
>d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.06 E-value=18 Score=26.10 Aligned_cols=25 Identities=16% Similarity=0.213 Sum_probs=22.1
Q ss_pred CccHHHHHHhhhhhHHHHHHHHHHh
Q psy7934 52 FTSLRDDLWGNAIFLKEANAISVEL 76 (138)
Q Consensus 52 ~~smaE~ll~nAv~LKEAN~iS~EL 76 (138)
|+++||.+|++.-.||++..+...+
T Consensus 132 ~e~lAe~i~q~Rqqlk~l~~l~~k~ 156 (186)
T d1bg1a1 132 ITSLAESQLQTRQQIKKLEELQQKV 156 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8899999999999999998776654
No 8
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.60 E-value=30 Score=19.87 Aligned_cols=29 Identities=21% Similarity=0.365 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHHHHhchhcCCccHHHHH
Q psy7934 30 CTWTEREFALAAWAFRKWKYHQFTSLRDDL 59 (138)
Q Consensus 30 ~~~s~rE~~lar~a~~kWk~~~~~smaE~l 59 (138)
..||++|-++...++.+-- .++..+|..+
T Consensus 3 ~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~ 31 (65)
T d2cu7a1 3 VKWTIEEKELFEQGLAKFG-RRWTKISKLI 31 (65)
T ss_dssp CCCCHHHHHHHHHHHHHTC-SCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhc-chHHHHHHHc
Confidence 5799999999999988876 5788888654
No 9
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.34 E-value=19 Score=21.18 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=24.7
Q ss_pred CCCCCHHHHHHHHHHHHhchhcCCccHHHHH
Q psy7934 29 ECTWTEREFALAAWAFRKWKYHQFTSLRDDL 59 (138)
Q Consensus 29 ~~~~s~rE~~lar~a~~kWk~~~~~smaE~l 59 (138)
..+||++|.++...++.+-- .++..+|+.+
T Consensus 17 ~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~ 46 (68)
T d1xc5a1 17 MNMWSEQEKETFREKFMQHP-KNFGLIASFL 46 (68)
T ss_dssp TTCCCTTTHHHHHHHHHHTT-SCSSSHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHC-CcHHHHHHHc
Confidence 45799999999999998875 4799898743
No 10
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.23 E-value=13 Score=21.13 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHHHHHhchhcCCccHHHH
Q psy7934 31 TWTEREFALAAWAFRKWKYHQFTSLRDD 58 (138)
Q Consensus 31 ~~s~rE~~lar~a~~kWk~~~~~smaE~ 58 (138)
+||++|=++.+.++.+....+...+|..
T Consensus 5 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~ 32 (52)
T d1gvda_ 5 PWTKEEDQRLIKLVQKYGPKRWSVIAKH 32 (52)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 6999999999999998776666666543
No 11
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.06 E-value=14 Score=21.51 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHHHhchhcCCccHHHHHHhh
Q psy7934 31 TWTEREFALAAWAFRKWKYHQFTSLRDDLWGN 62 (138)
Q Consensus 31 ~~s~rE~~lar~a~~kWk~~~~~smaE~ll~n 62 (138)
.||++|.++...++.+--. +|..++..+++|
T Consensus 3 ~WT~eE~~~F~~~~~~yGK-df~~I~~~~v~~ 33 (57)
T d2crga1 3 EWSASEACLFEEALEKYGK-DFNDIRQDFLPW 33 (57)
T ss_dssp CCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSS
T ss_pred CCCHHHHHHHHHHHHHHcc-cHHHHHHHHcCC
Confidence 6999999999999876544 555555444333
No 12
>d1kapp2 d.92.1.6 (P:1-246) Metalloprotease {Pseudomonas aeruginosa [TaxId: 287]}
Probab=21.03 E-value=33 Score=24.47 Aligned_cols=30 Identities=10% Similarity=0.164 Sum_probs=23.8
Q ss_pred cCCCCCCHHHHHHHHHHHHhchhcCCccHH
Q psy7934 27 DAECTWTEREFALAAWAFRKWKYHQFTSLR 56 (138)
Q Consensus 27 ~~~~~~s~rE~~lar~a~~kWk~~~~~sma 56 (138)
.....+|+.|+..+|.||..|...-.++..
T Consensus 83 ~~~~~~s~~q~~~vr~A~~~ws~va~i~F~ 112 (246)
T d1kapp2 83 GKFSAFSAQQQAQAKLSLQSWSDVTNIHFV 112 (246)
T ss_dssp CCCBCCCHHHHHHHHHHHHHHHTTBSEEEE
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHhhCccee
Confidence 345579999999999999999987555543
No 13
>d2aa1b1 a.1.1.2 (B:1-146) Hemoglobin, beta-chain {Antarctic fish (Trematomus newnesi) [TaxId: 35730]}
Probab=20.26 E-value=31 Score=22.46 Aligned_cols=18 Identities=33% Similarity=0.366 Sum_probs=15.4
Q ss_pred CCCCHHHHHHHHHHHHhc
Q psy7934 30 CTWTEREFALAAWAFRKW 47 (138)
Q Consensus 30 ~~~s~rE~~lar~a~~kW 47 (138)
++||++|+.+++..|.+=
T Consensus 1 ~~~T~~ek~~i~~sW~~v 18 (146)
T d2aa1b1 1 VEWTDFERATIKDIFSKL 18 (146)
T ss_dssp CCCCHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 369999999999988864
Done!