RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy7934
         (138 letters)



>gnl|CDD|220677 pfam10291, muHD, Muniscin C-terminal mu homology domain.  The
           muniscins are a family of endocytic adaptors that is
           conserved from yeast to humans.This C-terminal domain is
           structurally similar to mu homology domains, and is the
           region of the muniscin proteins involved in the
           interactions with the endocytic adaptor-scaffold
           proteins Ede1-eps15. This interaction influences
           muniscin localisation. The muniscins provide a combined
           adaptor-membrane-tubulation activity that is important
           for regulating endocytosis.
          Length = 251

 Score = 35.0 bits (81), Expect = 0.007
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 47  WKYHQFTSLRDDLWGNAIFLKEANAISVELKKKVQFQFTLLTDTLYSPLPPDLVSSVEEE 106
           W+  +   L D   G  I          E    VQ +F +   TL S L  +LV S  E 
Sbjct: 174 WRLPEPLVLSDGGEGKLIARFMTEGGGSEKPGGVQVKFEIEGPTL-SGLGIELVGS--EG 230

Query: 107 DED-RPLP--RTIVA 118
           DED R +P  R +V+
Sbjct: 231 DEDWREVPTKRRLVS 245


>gnl|CDD|148624 pfam07124, Phytoreo_P8, Phytoreovirus outer capsid protein P8.
           This family consists of several Phytoreovirus outer
           capsid protein P8 sequences.
          Length = 426

 Score = 27.5 bits (61), Expect = 2.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 1   MTMSLYSSYTPDDFNTEEDIFVNPLF 26
           +TM+L ++Y PD+       F +P +
Sbjct: 355 LTMNLITNYMPDNQIPNGIAFTSPWY 380


>gnl|CDD|237360 PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional.
          Length = 410

 Score = 26.8 bits (60), Expect = 4.1
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 13/64 (20%)

Query: 61  GNAIFLKEANAISVELKKKVQFQFTLLTD--------TLYSPLPPDLVSSVEEEDEDRPL 112
           G AI+L        +      +QF +  D         L++ L PD +  +E + E  P 
Sbjct: 236 GGAIWLDPE-----KTSPYEFYQFWMNIDDRDVVKYLKLFTDLSPDEIDELEAQLETEPN 290

Query: 113 PRTI 116
           PR  
Sbjct: 291 PRDA 294


>gnl|CDD|224287 COG1368, MdoB, Phosphoglycerol transferase and related proteins,
           alkaline phosphatase superfamily [Cell envelope
           biogenesis, outer membrane].
          Length = 650

 Score = 26.2 bits (58), Expect = 6.2
 Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 10/77 (12%)

Query: 63  AIFLKEANAISVELKKKVQFQFTLLTDTLYSPLPPDLVSSVEEEDEDRPLPRTIVAVEVL 122
               KE+  +  +LKK   F   ++T + + P          E   +  L   + A   L
Sbjct: 402 KDLFKESLPLLKKLKKP--FFSFVITLSNHGPFELP------EGKRNELLEEPLSASTAL 453

Query: 123 DTKNGATHY--WALQKL 137
                A HY   AL + 
Sbjct: 454 ANYLQAVHYADEALGQF 470


>gnl|CDD|99799 cd06202, Nitric_oxide_synthase, The ferredoxin-reductase (FNR) like
           C-terminal domain of the nitric oxide synthase (NOS)
           fuses with a heme-containing N-terminal oxidase domain.
           The reductase portion is similar in structure to NADPH
           dependent cytochrome-450 reductase (CYPOR), having an
           inserted connecting sub-domain within the FAD binding
           portion of FNR. NOS differs from CYPOR in a requirement
           for the cofactor tetrahydrobiopterin and unlike most
           CYPOR is dimeric. Nitric oxide synthase produces nitric
           oxide in the conversion of L-arginine to L-citruline.
           NOS has been implicated in a variety of processes
           including cytotoxicity, anti-inflamation,
           neurotransmission, and vascular smooth muscle
           relaxation.
          Length = 406

 Score = 26.1 bits (58), Expect = 7.2
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 97  PDLVSSVEEEDEDRPLPRTIVAVEVL---DTKNGATHYWALQKL 137
           P+LV ++ +   D P P  ++ +EVL    T  G    W   + 
Sbjct: 46  PELVDALLDRLHDAPPPDQVIKLEVLEERSTALGIIKTWTPHER 89


>gnl|CDD|221064 pfam11294, DUF3095, Protein of unknown function (DUF3095).  Some
          members in this bacterial family of proteins are
          annotated as adenylyl cyclase however this cannot be
          confirmed. Currently no function is known.
          Length = 373

 Score = 26.1 bits (58), Expect = 7.4
 Identities = 11/16 (68%), Positives = 12/16 (75%), Gaps = 1/16 (6%)

Query: 84 FTLLTD-TLYSPLPPD 98
          F LLTD +LY PLP D
Sbjct: 11 FELLTDPSLYRPLPDD 26


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.133    0.413 

Gapped
Lambda     K      H
   0.267   0.0697    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,337,294
Number of extensions: 649508
Number of successful extensions: 504
Number of sequences better than 10.0: 1
Number of HSP's gapped: 504
Number of HSP's successfully gapped: 16
Length of query: 138
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 51
Effective length of database: 7,078,804
Effective search space: 361019004
Effective search space used: 361019004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.6 bits)