RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7934
         (138 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.6 bits (58), Expect = 3.9
 Identities = 13/59 (22%), Positives = 18/59 (30%), Gaps = 22/59 (37%)

Query: 95  LPPDLVSSVEEEDEDRP--------LPRTIVAVEVLDT--------------KNGATHY 131
           LPP ++    E +E  P        L +  V   V  T               NGA + 
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL 377



 Score = 25.8 bits (56), Expect = 6.2
 Identities = 16/102 (15%), Positives = 26/102 (25%), Gaps = 27/102 (26%)

Query: 4   SLYSSYTPDDFNTEEDIFVNPLFDAECTWTEREFALAAWAFRKWKYHQFTSLRDDL--W- 60
            LY +Y            V  L       T  E         K           ++  W 
Sbjct: 175 DLYQTYHV---------LVGDLIK-FSAETLSELIRTTLDAEKVFTQGL-----NILEWL 219

Query: 61  ------GNAIFLKEANAISVELKKKVQF-QFTLLTDTL-YSP 94
                  +  +L     IS  L   +Q   + +    L ++P
Sbjct: 220 ENPSNTPDKDYLLSI-PISCPLIGVIQLAHYVVTAKLLGFTP 260


>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology,
          structural genomics, NEW YORK structura genomics
          research consortium; 1.88A {Lactobacillus acidophilus}
          Length = 484

 Score = 26.3 bits (59), Expect = 3.9
 Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 7/49 (14%)

Query: 1  MTMSLYSSYTPDDFNTEEDIF-VNPLFDAECTWTEREFALAAWAFRKWK 48
          M MS Y S  P    T E     +     +    +    LA   ++KW+
Sbjct: 1  MVMSKYQSVNP---YTNEAFASYDNPTSKQ---IDEAINLAHALYKKWR 43


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.133    0.413 

Gapped
Lambda     K      H
   0.267   0.0817    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,245,123
Number of extensions: 122703
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 11
Length of query: 138
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 54
Effective length of database: 4,356,429
Effective search space: 235247166
Effective search space used: 235247166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.6 bits)