RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7934
         (138 letters)



>d1uf2c1 a.115.1.3 (C:1-147,C:301-421) RDV p8 {Rice dwarf virus
           [TaxId: 10991]}
          Length = 268

 Score = 26.1 bits (57), Expect = 1.6
 Identities = 7/26 (26%), Positives = 11/26 (42%)

Query: 1   MTMSLYSSYTPDDFNTEEDIFVNPLF 26
           +T SL ++Y           F +P F
Sbjct: 199 LTNSLITNYMDPPAIPAGLAFTSPWF 224


>d1izna_ e.43.1.1 (A:) Capz alpha-1 subunit {Chicken (Gallus gallus)
           [TaxId: 9031]}
          Length = 275

 Score = 25.5 bits (56), Expect = 2.6
 Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 13/96 (13%)

Query: 40  AAWAFRKWKYHQFTSLRDDLWGNAIFLKEANAIS----VELKKKVQFQFTLLTDTLYSPL 95
           AA AF ++   QFT ++ + + + + + E   +     ++ + K+ F+F  L        
Sbjct: 44  AAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKE----- 98

Query: 96  PPDLVSSVEEEDEDRPLPRTIVAVEVLDTKNGATHY 131
                S  + ED +  L +   A +         HY
Sbjct: 99  ----ASDPQPEDTESALKQWRDACDSALRAYVKDHY 130


>d1cida2 b.1.1.3 (A:106-177) CD4 C2-set domains {Rat (Rattus rattus)
           [TaxId: 10117]}
          Length = 72

 Score = 23.3 bits (50), Expect = 4.9
 Identities = 10/50 (20%), Positives = 22/50 (44%)

Query: 78  KKVQFQFTLLTDTLYSPLPPDLVSSVEEEDEDRPLPRTIVAVEVLDTKNG 127
           K  Q     LT  +  P  P +   +++E+++  + R    ++V   + G
Sbjct: 3   KVTQPDSNTLTCEVMGPTSPKMRLILKQENQEARVSRQEKVIQVQAPEAG 52


>d1v29b_ b.34.4.4 (B:) Cobalt-containing nitrile hydratase
          {Bacillus smithii [TaxId: 1479]}
          Length = 229

 Score = 24.5 bits (53), Expect = 5.5
 Identities = 7/45 (15%), Positives = 12/45 (26%)

Query: 31 TWTEREFALAAWAFRKWKYHQFTSLRDDLWGNAIFLKEANAISVE 75
               EF +     R   Y   +     +   A  L E   +  +
Sbjct: 49 MKAFDEFRIGIEKMRPVDYLTSSYYGHWIATVAYNLLETGVLDEK 93


>d1nuna_ b.42.1.1 (A:) Fibroblast growth factor-10, FGF10 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 139

 Score = 23.7 bits (51), Expect = 7.1
 Identities = 5/38 (13%), Positives = 14/38 (36%)

Query: 14  FNTEEDIFVNPLFDAECTWTEREFALAAWAFRKWKYHQ 51
            N +  ++ +  F+ +C   ER        +  + +  
Sbjct: 66  MNKKGKLYGSKEFNNDCKLKERIEENGYNTYASFNWQH 103


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.413 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 554,864
Number of extensions: 24374
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 13
Length of query: 138
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,364,116
Effective search space: 84575192
Effective search space used: 84575192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.4 bits)