RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7936
(222 letters)
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 122 bits (309), Expect = 3e-34
Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 1 MSASKAVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRK 60
M+ A +TV+ITG N+G+G VTA+ L GA VIMA RD K E A +
Sbjct: 3 MTGWTAADLPSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMA- 61
Query: 61 HFEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
G+V +++LDL S+R A ++ +LINNA
Sbjct: 62 ------------GQVEVRELDLQDLSSVRRFADGVSG----ADVLINNA 94
Score = 84.6 bits (210), Expect = 7e-20
Identities = 14/82 (17%), Positives = 20/82 (24%), Gaps = 7/82 (8%)
Query: 130 GKNVNVYAVHPGIVKTELGRYMDDTYFPGARTLGRVLMWWWMKTPEQGAQTTLHCALDEG 189
G + A HPG T L L + GA+ TL+ A +
Sbjct: 187 GSPLRALAAHPGYSHTNLQGASGRKLG---DALMSAATRVVATDADFGARQTLYAASQDL 243
Query: 190 AAKE----TGLYYSDYKVAKSR 207
Y +
Sbjct: 244 PGDSFVGPRFGYLGRTQPVGRS 265
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 102 bits (256), Expect = 1e-26
Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 11/98 (11%)
Query: 13 DGKTVIITGCNTGIGKVTAQTLYG-IGAKVIMACRDVEKAETTASEIRKHFEVATSEDKK 71
++TG N GIG + L V++ RDV + + +++ +
Sbjct: 3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQA----------E 52
Query: 72 PGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+LD+ +SIR + + + +L+NNA
Sbjct: 53 GLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNA 90
Score = 69.7 bits (171), Expect = 2e-14
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 19/82 (23%)
Query: 124 LFYAIPGKNVNVYAVHPGIVKTELGRYMDDTYFPGARTLGRVLMWWWMKTPEQGAQTTLH 183
L G + + A PG V+T++ K+PE+GA+T ++
Sbjct: 211 LSEQRKGDKILLNACCPGWVRTDMAG------------------PKATKSPEEGAETPVY 252
Query: 184 CA-LDEGAAKETGLYYSDYKVA 204
A L A G + S+ +V
Sbjct: 253 LALLPPDAEGPHGQFVSEKRVE 274
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 97.7 bits (243), Expect = 2e-24
Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 10/152 (6%)
Query: 5 KAVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEV 64
+ + + ++TG N GIG + L G V++ CRDV K +++
Sbjct: 3 ETCPNTVTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKN---- 58
Query: 65 ATSEDKKPGEVLIKKLDLAS-FKSIRDCAQDINQTEANVHILINNAVYCILSNNILFYSI 123
V+ +LD+ ++ A I + IL+NNA S + +
Sbjct: 59 -----SNHENVVFHQLDVTDPIATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKA 113
Query: 124 LFYAIPGKNVNVYAVHPGIVKTELGRYMDDTY 155
+ I + + ++ EL +
Sbjct: 114 MISDIGEDSEELVKIYEKPEAQELMSETYELA 145
Score = 67.7 bits (165), Expect = 1e-13
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 19/74 (25%)
Query: 131 KNVNVYAVHPGIVKTELGRYMDDTYFPGARTLGRVLMWWWMKTPEQGAQTTLHCALDEGA 190
V V PG+VKTE+ + T E+GA+ + AL
Sbjct: 255 PKFQVNCVCPGLVKTEMNYGI------------------GNYTAEEGAEHVVRIALFPDD 296
Query: 191 AKETGLYYSDYKVA 204
+G +Y +++
Sbjct: 297 G-PSGFFYDCSELS 309
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 78.4 bits (194), Expect = 1e-17
Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 8/108 (7%)
Query: 2 SASKAVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKH 61
R + ++TG + GIG A+ L G KV+ R V E A+E +
Sbjct: 20 GHMARPGMERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECK-- 77
Query: 62 FEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
PG ++ + DL++ + I I + V I INNA
Sbjct: 78 ------SAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNA 119
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 78.4 bits (194), Expect = 1e-17
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 11/99 (11%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
L G+ ++TG + GIG++ AQ L GA+V + RD E TA+ + +
Sbjct: 26 SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAY--------- 76
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
G+ DL+S R AQ + + A + IL+NNA
Sbjct: 77 --GDCQAIPADLSSEAGARRLAQALGELSARLDILVNNA 113
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 77.6 bits (192), Expect = 1e-17
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
IITG + GIG V A L G +V++ R + E EI + +K
Sbjct: 4 EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMR-------SNK 56
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
E ++ LD+ +DI+Q V IL+N A
Sbjct: 57 HVQEPIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAA 95
Score = 28.3 bits (64), Expect = 2.0
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 130 GKNVNVYAVHPGIVKTELGRYMDDTY 155
+ V + PG V T++ + +
Sbjct: 178 PLGIRVTTLCPGWVNTDMAKKAGTPF 203
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 77.3 bits (191), Expect = 4e-17
Identities = 23/99 (23%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
L G+ I+TG TGIGK + L +G+ V++A R +E+ ++ A E++ +
Sbjct: 15 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTK---- 70
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
V+ + ++ + + + + + T ++ L+NN
Sbjct: 71 -QARVIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNG 108
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 76.9 bits (190), Expect = 6e-17
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 12 LDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKK 71
GK ITG TG+GK L +GA+ ++A R ++ + TA +I +
Sbjct: 24 FQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQIS---------SQT 74
Query: 72 PGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+V + D+ +++ ++ + + +I+INNA
Sbjct: 75 GNKVHAIQCDVRDPDMVQNTVSELIKVAGHPNIVINNA 112
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 75.7 bits (187), Expect = 1e-16
Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 10/99 (10%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
L GK +ITG +TGIGK A GA+V +A R + + A EI
Sbjct: 29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIA----------G 78
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
G+ L + D+ +R + + I + NA
Sbjct: 79 VGGKALPIRCDVTQPDQVRGMLDQMTGELGGIDIAVCNA 117
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 74.8 bits (185), Expect = 1e-16
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 10/99 (10%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
L GKT ++TG G+G A+ L GA+VI+ + + +
Sbjct: 6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLT----------R 55
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
K + D+ +I ++ +V ILINNA
Sbjct: 56 KGYDAHGVAFDVTDELAIEAAFSKLDAEGIHVDILINNA 94
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 75.3 bits (186), Expect = 2e-16
Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 10/109 (9%)
Query: 1 MSASKAVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRK 60
M+ ++ L GK ++TG + GIG A GA ++ + E + + +
Sbjct: 21 MNQQFSLDQFSLKGKIALVTGASYGIGFAIASAYAKAGATIVFNDINQELVDRGMAAYK- 79
Query: 61 HFEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
D+ I+ I + IL+NNA
Sbjct: 80 ---------AAGINAHGYVCDVTDEDGIQAMVAQIESEVGIIDILVNNA 119
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 74.5 bits (184), Expect = 2e-16
Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 7/102 (6%)
Query: 8 SASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATS 67
L G+ +++TG GIG A+ GA V++ R + +I+ +
Sbjct: 8 HPELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPL 67
Query: 68 EDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
++ L+ A+ + R+ A + + L++NA
Sbjct: 68 -------IIALNLENATAQQYRELAARVEHEFGRLDGLLHNA 102
Score = 29.8 bits (68), Expect = 0.52
Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 12/65 (18%)
Query: 131 KNVNVYAVHPGIVKTELGRYMDDTYFPGARTLGRVLMWWWMKTPEQGAQTTLHCALDEGA 190
V +++PG +T M +P L PE L+ + +
Sbjct: 189 TAVRANSINPGATRTG----MRAQAYPDENPLNN-------PAPEDIMPVYLYLMGPD-S 236
Query: 191 AKETG 195
G
Sbjct: 237 TGING 241
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 74.5 bits (184), Expect = 3e-16
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 11/111 (9%)
Query: 1 MSASKAVSAS--RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEI 58
M+ + A RLDGK +ITG GIG A+ GA+++++ RDV + + +
Sbjct: 5 MTTTDDRYAGVLRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRAL 64
Query: 59 RKHFEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
++ +V +DLA + + A+ + + +L+NNA
Sbjct: 65 G---------EQFGTDVHTVAIDLAEPDAPAELARRAAEAFGGLDVLVNNA 106
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 74.1 bits (183), Expect = 3e-16
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 9 ASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSE 68
++ + K VIITG ++G+GK A GA+V++ R EK E EI +
Sbjct: 1 SNAMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQF------- 53
Query: 69 DKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
PG++L ++D+ + I+ + I++ + ILINNA
Sbjct: 54 ---PGQILTVQMDVRNTDDIQKMIEQIDEKFGRIDILINNA 91
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 74.2 bits (183), Expect = 3e-16
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 10 SRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSED 69
S L G+ ++TG + GIG A+ L +GA+V++ RDVEK EI
Sbjct: 25 SSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIV---------- 74
Query: 70 KKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
GE DL+ +I A + +L+NNA
Sbjct: 75 AAGGEAESHACDLSHSDAIAAFATGVLAAHGRCDVLVNNA 114
Score = 26.0 bits (58), Expect = 9.7
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 130 GKNVNVYAVHPGIVKTELGRYMDDTYFPGAR 160
V V V PG V+TE G +
Sbjct: 199 QHQVRVSLVAPGSVRTEFGVGLSAKKSALGA 229
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 74.5 bits (184), Expect = 3e-16
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 7/100 (7%)
Query: 10 SRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSED 69
R KTVIITG + GIG+ TA GA V + R E+ E T I K
Sbjct: 2 PRFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILK-------SG 54
Query: 70 KKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+V D+ + + + +L+NNA
Sbjct: 55 VSEKQVNSVVADVTTEDGQDQIINSTLKQFGKIDVLVNNA 94
Score = 27.6 bits (62), Expect = 3.6
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 131 KNVNVYAVHPGIVKTELGRYMDDT 154
+ V +V PG+V+T M
Sbjct: 183 FGIRVNSVSPGMVETGFTNAMGMP 206
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 73.7 bits (182), Expect = 4e-16
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
RLD + I+TG IG L GA+VI+A D A ++R
Sbjct: 10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEG-------- 61
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+V +D+ + +S+++ + +++ E V IL+ A
Sbjct: 62 --HDVSSVVMDVTNTESVQNAVRSVHEQEGRVDILVACA 98
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 74.3 bits (183), Expect = 4e-16
Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 12/112 (10%)
Query: 1 MSASKAVSASRLDGKTVIITGCNTGIGKVTAQTLYGIG---AKVIMACRDVEKAETTASE 57
MS + +A RL KTV+ITG + GIGK TA K+I+A R +EK E
Sbjct: 21 MSQGRK-AAERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKT 79
Query: 58 IRKHFEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
I + F +V + +LD+ + I+ +++ Q ++ IL+NNA
Sbjct: 80 IDQEF--------PNAKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNA 123
Score = 26.1 bits (58), Expect = 9.1
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 130 GKNVNVYAVHPGIVKTEL 147
+ V + PG+V+TE
Sbjct: 208 NTKIRVILIAPGLVETEF 225
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 72.6 bits (179), Expect = 7e-16
Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 13 DGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKKP 72
+ K +ITG + GIG+ A+ L G + + R V++ E A E+ + ++
Sbjct: 1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQ---------EQG 51
Query: 73 GEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
EV LD++ +S+ + ++ + + +V +++ NA
Sbjct: 52 VEVFYHHLDVSKAESVEEFSKKVLERFGDVDVVVANA 88
Score = 26.3 bits (59), Expect = 7.6
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 130 GKNVNVYAVHPGIVKTELG 148
+V + + PG V T G
Sbjct: 169 NPDVRFFELRPGAVDTYFG 187
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 73.4 bits (181), Expect = 7e-16
Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 11/107 (10%)
Query: 3 ASKAVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHF 62
+S V T+ ITG +G G+ A+ G +++ R E+ + A E+
Sbjct: 10 SSGLVPRGSHMSSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGEL---- 65
Query: 63 EVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
VL LD+ ++ ++ + A + LINNA
Sbjct: 66 -------SAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGLINNA 105
Score = 26.8 bits (60), Expect = 6.3
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 130 GKNVNVYAVHPGIVKTEL 147
G V V + PG+ ++E
Sbjct: 191 GTGVRVTNLEPGLCESEF 208
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 73.1 bits (180), Expect = 8e-16
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 12 LDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKK 71
+ G+ V+ITG GIG++TA + +K+++ + E TA++ +
Sbjct: 29 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL---------- 78
Query: 72 PGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+V +D ++ + I A+ + +V IL+NNA
Sbjct: 79 GAKVHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNA 116
Score = 27.2 bits (61), Expect = 3.9
Identities = 6/33 (18%), Positives = 10/33 (30%)
Query: 125 FYAIPGKNVNVYAVHPGIVKTELGRYMDDTYFP 157
A+ V + P V T + + P
Sbjct: 198 LAALQITGVKTTCLCPNFVNTGFIKNPSTSLGP 230
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 72.6 bits (179), Expect = 1e-15
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 9 ASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSE 68
S L GK +ITG ++GIG+ TA+ L GA V +A R VEK E+
Sbjct: 2 PSALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELT--------- 52
Query: 69 DKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+V + +LD+A + + + + IL+NNA
Sbjct: 53 -AAGAKVHVLELDVADRQGVDAAVASTVEALGGLDILVNNA 92
Score = 26.7 bits (60), Expect = 6.2
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 3/31 (9%)
Query: 130 GKNVNVYAVHPGIVKTELGRYMDDTYFPGAR 160
+ V V + PG TEL +
Sbjct: 175 ERGVRVVVIEPGTTDTEL---RGHITHTATK 202
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 73.1 bits (180), Expect = 1e-15
Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 9/108 (8%)
Query: 2 SASKAVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKH 61
++ L GK VI+TG + GIG+ A L +GA V++ R E + S +
Sbjct: 16 PLNEEFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLEL 75
Query: 62 FEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ + + +LI N
Sbjct: 76 G---------AASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNH 114
Score = 27.6 bits (62), Expect = 3.4
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 127 AIPGKNVNVYAVHPGIVKTELGR 149
++ NV++ G++ TE
Sbjct: 196 SVSRVNVSITLCVLGLIDTETAM 218
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 72.5 bits (179), Expect = 1e-15
Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 10/109 (9%)
Query: 1 MSASKAVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRK 60
M+++ L+ K ++T GIG A+ L GA V+++ R E + T + ++
Sbjct: 1 MASTGVERRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQ- 59
Query: 61 HFEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ V + + V IL++NA
Sbjct: 60 ---------GEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNA 99
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 72.2 bits (178), Expect = 2e-15
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
+ GK +ITG ++GIG A+ GA +++ R V++ A ++ +K
Sbjct: 4 GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLK---------EK 54
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
VL +D+A+ + + + + + IL+NNA
Sbjct: 55 FGVRVLEVAVDVATPEGVDAVVESVRSSFGGADILVNNA 93
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 72.1 bits (178), Expect = 2e-15
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
RLDGK IITG GIGK A T GA V+++ + + A EI+ +
Sbjct: 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQ----------Q 57
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
G+ + D+ S + + A V IL+NNA
Sbjct: 58 LGGQAFACRCDITSEQELSALADFAISKLGKVDILVNNA 96
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 72.3 bits (178), Expect = 2e-15
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 9/98 (9%)
Query: 12 LDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKK 71
L K ITG +GIG A+ G ++A R + + T A ++
Sbjct: 25 LRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAG---------AT 75
Query: 72 PGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
L +D+ + ++ + + ILIN A
Sbjct: 76 GRRCLPLSMDVRAPPAVMAAVDQALKEFGRIDILINCA 113
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 71.8 bits (177), Expect = 2e-15
Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 11/110 (10%)
Query: 1 MSASKAVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRK 60
M+ ++ L KTV++TG GIG + G GA + R+ + S+ +
Sbjct: 1 MAGAEQSQRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQ- 59
Query: 61 HFEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQT-EANVHILINNA 109
KK +V D + Q ++ + ILINN
Sbjct: 60 ---------KKGFQVTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNL 100
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 71.8 bits (177), Expect = 2e-15
Identities = 21/99 (21%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
L G+ ++TG + G+G AQ L G V++A R++E+A A ++ + K
Sbjct: 18 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTE---------K 68
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
E + + D+++++ ++ + + + + ++N A
Sbjct: 69 YGVETMAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAA 107
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 71.8 bits (177), Expect = 2e-15
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 12 LDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKK 71
+ K ++ITG + GIG+ A+ L GAK+++ R + E A+EIR
Sbjct: 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIR----------DA 51
Query: 72 PGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
G L + LD+ S+ AQ T + +L+NNA
Sbjct: 52 GGTALAQVLDVTDRHSVAAFAQAAVDTWGRIDVLVNNA 89
Score = 26.4 bits (59), Expect = 7.9
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 130 GKNVNVYAVHPGIVKTEL 147
N+ V V+PG+V++EL
Sbjct: 171 STNIRVTCVNPGVVESEL 188
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 71.5 bits (176), Expect = 3e-15
Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 10/109 (9%)
Query: 1 MSASKAVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRK 60
S + +T +TG ++GIG A+TL G V RD + +R
Sbjct: 11 SSGLVPRGSHMSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRA 70
Query: 61 HFEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+V D+ S + + + IL+N+A
Sbjct: 71 A----------GHDVDGSSCDVTSTDEVHAAVAAAVERFGPIGILVNSA 109
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 71.5 bits (176), Expect = 4e-15
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 10/100 (10%)
Query: 10 SRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSED 69
+ D + ++TG +GIG A+ L G +V + R E TT E+R
Sbjct: 18 ATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELR---------- 67
Query: 70 KKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ E + D+ S I + + V +L+NNA
Sbjct: 68 EAGVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNA 107
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 70.6 bits (174), Expect = 4e-15
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 8 SASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATS 67
L+ + +++TG + GIG+ A T GA VI+ R+ EK AS I +
Sbjct: 6 KQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINE------- 58
Query: 68 EDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
E + + I L + ++ + AQ I + +++NA
Sbjct: 59 ETGRQPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNA 100
Score = 31.3 bits (72), Expect = 0.16
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 12/66 (18%)
Query: 130 GKNVNVYAVHPGIVKTELGRYMDDTYFPGARTLGRVLMWWWMKTPEQGAQTTLHCALDEG 189
+ + V ++PG +T M + FP + +KTP L D+
Sbjct: 184 QQRLRVNCINPGGTRTA----MRASAFPTE-DPQK------LKTPADIMPLYLWLMGDD- 231
Query: 190 AAKETG 195
+ ++TG
Sbjct: 232 SRRKTG 237
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 71.0 bits (175), Expect = 5e-15
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 11/100 (11%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
L+G T ++TG + GIG + L +GA V R+ ++ ++ R
Sbjct: 6 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWR----------S 55
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQT-EANVHILINNA 109
K +V DL+S ++ + ++IL+NNA
Sbjct: 56 KGFKVEASVCDLSSRSERQELMNTVANHFHGKLNILVNNA 95
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 71.1 bits (175), Expect = 5e-15
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 7/100 (7%)
Query: 10 SRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSED 69
+R K IITG + GIG+ TA GAKV + R E+ E T +I
Sbjct: 2 TRFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILA-------AG 54
Query: 70 KKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
V D+ + + + IL+NNA
Sbjct: 55 VSEQNVNSVVADVTTDAGQDEILSTTLGKFGKLDILVNNA 94
Score = 27.5 bits (62), Expect = 3.7
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 131 KNVNVYAVHPGIVKTELGRYMDDT 154
+ V ++ PG+V T G M
Sbjct: 183 HGIRVNSISPGLVATGFGSAMGMP 206
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 70.2 bits (173), Expect = 7e-15
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
R + K I+TG GIG+ A+ L GA V++A + E AE A +I
Sbjct: 6 RFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIV----------A 55
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
G + +D++ +S + A + L+NNA
Sbjct: 56 DGGTAISVAVDVSDPESAKAMADRTLAEFGGIDYLVNNA 94
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 70.3 bits (173), Expect = 8e-15
Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 4/100 (4%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
RL ++TG +GIG+ + L G GA V D A+ T + + E
Sbjct: 4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLG---GPGSKEGP 60
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQT-EANVHILINNA 109
G + D++ ++ R + + ++++ A
Sbjct: 61 PRGNHAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCA 100
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 70.7 bits (174), Expect = 8e-15
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 13/103 (12%)
Query: 10 SRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSED 69
+R GK+VIITG + GIG+ A GA+V + R+ ++ E T +I K
Sbjct: 22 ARFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILK-------AG 74
Query: 70 KKPGEVLIKKLDLASFKSIRDCAQDINQTEAN---VHILINNA 109
++ D+ IN T A + IL+NNA
Sbjct: 75 VPAEKINAVVADVTEAS---GQDDIINTTLAKFGKIDILVNNA 114
Score = 26.4 bits (59), Expect = 7.0
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 131 KNVNVYAVHPGIVKTELGRYMDDT 154
V V +V PG V T M
Sbjct: 201 HGVRVNSVSPGAVATGFMGAMGLP 224
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 70.2 bits (173), Expect = 8e-15
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 10/99 (10%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
L+ I+TG GIG+ A T GA V++ E AE A+ IR +
Sbjct: 9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIR----------Q 58
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
G+ + + ++ + + + +L+NNA
Sbjct: 59 AGGKAIGLECNVTDEQHREAVIKAALDQFGKITVLVNNA 97
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 70.3 bits (173), Expect = 8e-15
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 8/99 (8%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
L ++TG ++GIG T + L GA V RD E+ S +R +
Sbjct: 5 DLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALR--------QRF 56
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ D+ +R A+ +T IL+NNA
Sbjct: 57 PGARLFASVCDVLDALQVRAFAEACERTLGCASILVNNA 95
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 70.2 bits (173), Expect = 9e-15
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 11/100 (11%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
L G T ++TG + GIG + L G+GA+V R+ ++ + R +
Sbjct: 18 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWR----------E 67
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQT-EANVHILINNA 109
K V DL S Q + + ++IL+NNA
Sbjct: 68 KGLNVEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNA 107
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 69.8 bits (172), Expect = 1e-14
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 12 LDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKK 71
L+ K ++TG + GIG A L GA V+ AE + ++ +K
Sbjct: 3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMK----------EK 52
Query: 72 PGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ L+++ +SI++ +I + IL+NNA
Sbjct: 53 GFKARGLVLNISDIESIQNFFAEIKAENLAIDILVNNA 90
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 70.3 bits (173), Expect = 1e-14
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
L ++V++TG GIG+ A GA V +A R + + +E+ +
Sbjct: 38 DLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELG---------EL 88
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
G V+ +LD++ S D A+ + + ++ NA
Sbjct: 89 GAGNVIGVRLDVSDPGSCADAARTVVDAFGALDVVCANA 127
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 69.9 bits (172), Expect = 1e-14
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 10/98 (10%)
Query: 12 LDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKK 71
+ K ++TG GIG+ A+ L + VI R + ++ EI+
Sbjct: 42 GENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIK----------SF 91
Query: 72 PGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
E D++ + I + I NV IL+NNA
Sbjct: 92 GYESSGYAGDVSKKEEISEVINKILTEHKNVDILVNNA 129
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 69.9 bits (172), Expect = 1e-14
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
++GK ++TG GIG+ A+ L GAKV + ++E + + + FE
Sbjct: 4 MVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFE------- 56
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
P + L + D+A + +RD + + + IL+NNA
Sbjct: 57 -PQKTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNA 94
Score = 26.8 bits (60), Expect = 5.3
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 130 GKNVNVYAVHPGIVKTELGRYMDDTYFPGARTLGRVLM 167
V + A+ PG V T + ++ G + +
Sbjct: 175 NSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHI 212
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 70.5 bits (173), Expect = 1e-14
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 12/103 (11%)
Query: 15 KTVIITGCNTGIGKVTAQTL---YGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKK 71
V+ITGC++GIG A L KV RD++ E A +
Sbjct: 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLW-------EAARALACP 55
Query: 72 PGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNAVYCIL 114
PG + +LD+ KS+ + + TE V +L+ NA +L
Sbjct: 56 PGSLETLQLDVRDSKSVAAARERV--TEGRVDVLVCNAGLGLL 96
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 69.9 bits (172), Expect = 1e-14
Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 10/99 (10%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
L GK +TG + GIG A+ GA V + E + +
Sbjct: 31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTY--------- 81
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
K +++ KS+ + + + + + NA
Sbjct: 82 -GVHSKAYKCNISDPKSVEETISQQEKDFGTIDVFVANA 119
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 69.5 bits (171), Expect = 1e-14
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 9/109 (8%)
Query: 1 MSASKAVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRK 60
M+A+ + + +R + V+ITG +G+G+ TA L GAK+ + E E + + +
Sbjct: 1 MTATSSPT-TRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVL- 58
Query: 61 HFEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
E EVL D++ + + + NNA
Sbjct: 59 -------ETAPDAEVLTTVADVSDEAQVEAYVTATTERFGRIDGFFNNA 100
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 69.5 bits (171), Expect = 2e-14
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
RLDG +TG +GIG + GA++I+ R+ + A E+
Sbjct: 8 RLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGA---------- 57
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
D+ +++ A + + A V IL+N+A
Sbjct: 58 --AVAARIVADVTDAEAMTAAAAEA-EAVAPVSILVNSA 93
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 69.1 bits (170), Expect = 2e-14
Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 9/99 (9%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
L G++V++TG GIG+ A GA V +A R + +++ +
Sbjct: 7 DLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLG-------- 58
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
G+V+ + D++ A + + ++ NA
Sbjct: 59 -SGKVIGVQTDVSDRAQCDALAGRAVEEFGGIDVVCANA 96
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 69.8 bits (171), Expect = 2e-14
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 8/102 (7%)
Query: 8 SASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATS 67
S G+T +TG G+G + L G KV +A + + + +
Sbjct: 2 SLKDFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLE-------- 53
Query: 68 EDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ EV+ +LD+AS + + A ++ V IL NNA
Sbjct: 54 AEGSGPEVMGVQLDVASREGFKMAADEVEARFGPVSILCNNA 95
Score = 29.7 bits (67), Expect = 0.72
Identities = 7/62 (11%), Positives = 19/62 (30%), Gaps = 9/62 (14%)
Query: 130 GKNVNVYAVHPGIVKTEL---GRYMDDTYFPGARTLGRVL------MWWWMKTPEQGAQT 180
+ V + PG+VK+ + D + + + + + P+
Sbjct: 185 KYEIGVSVLCPGLVKSYIYASDDIRPDALKGEVKPVDKTAVERLAGVHEFGMEPDVIGAR 244
Query: 181 TL 182
+
Sbjct: 245 VI 246
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 69.1 bits (170), Expect = 2e-14
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 10/102 (9%)
Query: 8 SASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATS 67
S L K VI+TG +GIG+ A+ + V+ ++ E+R
Sbjct: 1 SYQSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELR-------- 52
Query: 68 EDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
EVL K D++ K + + + +T + + +L NNA
Sbjct: 53 --GMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNA 92
Score = 28.6 bits (65), Expect = 1.4
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 131 KNVNVYAVHPGIVKTELGRYMDDTYFPGARTL 162
+ + AV PG VKT +G G RTL
Sbjct: 178 QGIRAVAVLPGTVKTNIGLGSSKPSELGMRTL 209
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 68.7 bits (169), Expect = 2e-14
Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 18/99 (18%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
G ++TG GIG+ T + L+ GAKV+ R + A E V
Sbjct: 4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVC----- 58
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+DL + + I V +L+NNA
Sbjct: 59 ---------VDLGDWDATEKALGGIGP----VDLLVNNA 84
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 68.8 bits (169), Expect = 3e-14
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 13/102 (12%)
Query: 8 SASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATS 67
S S+ K I+TG +G+G+ A L G G V +A R ++ + TA+EI
Sbjct: 22 SMSKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEI--------- 72
Query: 68 EDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ L D+ S+R + V +L NNA
Sbjct: 73 ----GDDALCVPTDVTDPDSVRALFTATVEKFGRVDVLFNNA 110
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 68.4 bits (168), Expect = 4e-14
Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 10/99 (10%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
+ +GK ++TG IG TA L G + + + E E + +R +
Sbjct: 4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVR----------E 53
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
K E D+ S +++ + + + L NNA
Sbjct: 54 KGVEARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNA 92
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 68.0 bits (167), Expect = 4e-14
Identities = 15/98 (15%), Positives = 34/98 (34%), Gaps = 13/98 (13%)
Query: 12 LDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKK 71
+ +I+TG +G+G+ L G +V M R ++ + +
Sbjct: 1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLL------------- 47
Query: 72 PGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
V+ DLA + + + ++++ A
Sbjct: 48 GNAVIGIVADLAHHEDVDVAFAAAVEWGGLPELVLHCA 85
Score = 26.0 bits (58), Expect = 8.6
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 12/68 (17%)
Query: 130 GKNVNVYAVHPGIVKTELGRYMDDTYFPGARTLGRVLMWWWMKTPEQGAQTTLHCALDEG 189
+ + ++P +++E D G TPE A L
Sbjct: 168 DSPLRLVNLYPSGIRSEFWDNTDHVDPSG------------FMTPEDAAAYMLDALEARS 215
Query: 190 AAKETGLY 197
+ T L+
Sbjct: 216 SCHVTDLF 223
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 68.3 bits (168), Expect = 4e-14
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 10/98 (10%)
Query: 12 LDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKK 71
LD + I+TG + GIG+ A L GA VI AE + + +
Sbjct: 26 LDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFK----------QA 75
Query: 72 PGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
E L++ ++ + + +++L+NNA
Sbjct: 76 GLEGRGAVLNVNDATAVDALVESTLKEFGALNVLVNNA 113
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 68.3 bits (168), Expect = 5e-14
Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 7/99 (7%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
+T ++TG +GIGK A L GA V++ R+ +K E+
Sbjct: 8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANG----- 62
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
G + + D+ + + +H +++ A
Sbjct: 63 --GAIRYEPTDITNEDETARAVDAVTAWHGRLHGVVHCA 99
Score = 27.5 bits (62), Expect = 3.6
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 131 KNVNVYAVHPGIVKTELGRYMDDT 154
V V ++ PG+++T+L + ++
Sbjct: 185 SWVRVNSIRPGLIRTDLVAAITES 208
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 68.4 bits (168), Expect = 5e-14
Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 14/113 (12%)
Query: 2 SASKAVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACR-DVEKAETTASEIRK 60
S+ S ++ ++TG IG+ A L+ G +V++ E A + A E+ K
Sbjct: 11 SSGLVPRGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNK 70
Query: 61 HFEVATSEDKKPGEVLIKKLDLASFKSIRDCAQD-INQTEAN---VHILINNA 109
++ ++ + DL + + ++ IN +L+NNA
Sbjct: 71 ---------ERSNTAVVCQADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNA 114
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 67.9 bits (167), Expect = 5e-14
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 18/99 (18%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
L G+ V++TG GIG+ T Q L+ GA+V+ R ++ E V
Sbjct: 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVC----- 58
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+DL +++ + V +L+NNA
Sbjct: 59 ---------VDLGDWEATERALGSVGP----VDLLVNNA 84
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 68.0 bits (167), Expect = 6e-14
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 9/104 (8%)
Query: 6 AVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVA 65
A +G+ ++TG TG+G+ AQ L G V++ R + + A EI
Sbjct: 25 AQGKGSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIG------ 78
Query: 66 TSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ V D+ + + A + +L+NNA
Sbjct: 79 ---GRTGNIVRAVVCDVGDPDQVAALFAAVRAEFARLDLLVNNA 119
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 67.9 bits (167), Expect = 6e-14
Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 10/100 (10%)
Query: 11 RLDGKTVIITG-CNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSED 69
L GK V++T TGIG TA+ GA V+++ + T ++ D
Sbjct: 19 LLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLA---------D 69
Query: 70 KKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
G V D+ S +++ + + +L+NNA
Sbjct: 70 LGLGRVEAVVCDVTSTEAVDALITQTVEKAGRLDVLVNNA 109
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 67.5 bits (166), Expect = 7e-14
Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 11/101 (10%)
Query: 9 ASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSE 68
++RLDGK IITG GIG A GAKV++ R + E A +
Sbjct: 1 SNRLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSV---------- 50
Query: 69 DKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
P ++ + D + + V L+NNA
Sbjct: 51 -GTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVSTLVNNA 90
Score = 30.9 bits (71), Expect = 0.25
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 126 YAIPGKNVNVYAVHPGIVKTELGRYMDDT 154
A+ +V V VHPG +KT L +
Sbjct: 173 CALKDYDVRVNTVHPGYIKTPLVDDLPGA 201
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 67.8 bits (166), Expect = 9e-14
Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 10/107 (9%)
Query: 3 ASKAVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHF 62
S S DG+ ++TG +GIG TA GA+++++ D E + +R
Sbjct: 20 GSMDGFLSGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQ- 78
Query: 63 EVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ D+ + A + + V ++ +NA
Sbjct: 79 ---------GFDAHGVVCDVRHLDEMVRLADEAFRLLGGVDVVFSNA 116
Score = 31.2 bits (71), Expect = 0.22
Identities = 9/69 (13%), Positives = 20/69 (28%), Gaps = 8/69 (11%)
Query: 130 GKNVNVYAVHPGIVKTELGRYMDDTY-------FPGARTLGRVLMWWWMKTPEQGAQTTL 182
+ V + P +V+T+L + G + + + A+ T
Sbjct: 201 PNGIGVSVLCPMVVETKLVSNSERIRGADYGMSATPEGAFGPLPTQDESVSADDVARLTA 260
Query: 183 HCALDEGAA 191
A+
Sbjct: 261 D-AILANRL 268
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 67.2 bits (165), Expect = 9e-14
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 10/99 (10%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
L K V+I+G +G A+ GA +++A R VE+ E A ++
Sbjct: 8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVT----------D 57
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
L D+ + + + V ++INNA
Sbjct: 58 TGRRALSVGTDITDDAQVAHLVDETMKAYGRVDVVINNA 96
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 67.2 bits (165), Expect = 9e-14
Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 13/100 (13%)
Query: 10 SRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSED 69
RL GKT+++TG +GIG+ GA ++ R+ + +
Sbjct: 2 GRLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE---------- 51
Query: 70 KKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
E + D++ K++ + + +H + + A
Sbjct: 52 ---AEAIAVVADVSDPKAVEAVFAEALEEFGRLHGVAHFA 88
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 67.0 bits (164), Expect = 1e-13
Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 15/108 (13%)
Query: 9 ASRLDGKTVIITGCNTGIGKVTAQTL---YGIGAKVIMACRDVEKAETTASEIRKHFEVA 65
A L ++TG + G G+ A L G+ ++++ R E+
Sbjct: 1 ADGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELG------ 54
Query: 66 TSEDKKPGEVLIKKLDLASFKSIRDCAQDINQT----EANVHILINNA 109
+ +V++ DL + ++ + + +LINNA
Sbjct: 55 --AQQPDLKVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNA 100
Score = 29.6 bits (67), Expect = 0.69
Identities = 11/78 (14%), Positives = 26/78 (33%), Gaps = 16/78 (20%)
Query: 130 GKNVNVYAVHPGIVKTELGRYMDDT--------YFPGARTLGRVLMWWWMKTPEQGAQTT 181
+V V + PG + ++ + +T ++ G ++ AQ
Sbjct: 187 EPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKLKSDGALV------DCGTSAQKL 240
Query: 182 LHCALDEGAAKETGLYYS 199
L L + ++G +
Sbjct: 241 L--GLLQKDTFQSGAHVD 256
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 67.3 bits (165), Expect = 1e-13
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 10/108 (9%)
Query: 3 ASKAVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRD-VEKAETTASEIRKH 61
++ + + KT +ITG +GIG A+TL GA +++ ++ T E+
Sbjct: 14 GTENLYFQSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEV--- 70
Query: 62 FEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
G VL D+ I D + IL+NNA
Sbjct: 71 ------AGLSSGTVLHHPADMTKPSEIADMMAMVADRFGGADILVNNA 112
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 67.2 bits (165), Expect = 1e-13
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 10/99 (10%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
+ITG +GIG+ TA L G V R + E A EI
Sbjct: 25 NQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIV----------G 74
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
G+ + + D++ +R+ +D+ ++ I++ NA
Sbjct: 75 AGGQAIALEADVSDELQMRNAVRDLVLKFGHLDIVVANA 113
Score = 26.4 bits (59), Expect = 8.7
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 131 KNVNVYAVHPGIVKTELGRYMDDT 154
++ V AV PG ++T +
Sbjct: 201 HHIRVNAVCPGAIETNISDNTKLR 224
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 67.1 bits (164), Expect = 2e-13
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 14 GKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKKPG 73
K ++ITG ++G G++TA+ L G G +V + RD+ + E +A
Sbjct: 5 KKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVE-----AIAGFARDNDV 59
Query: 74 EVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
++ +LD+ S S+ I + + +LI+NA
Sbjct: 60 DLRTLELDVQSQVSVDRAIDQIIGEDGRIDVLIHNA 95
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 66.0 bits (162), Expect = 2e-13
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 12/100 (12%)
Query: 10 SRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSED 69
RL K +ITG GIG+ A+ GA + +A D+ A + IR
Sbjct: 3 QRLKDKLAVITGGANGIGRAIAERFAVEGADIAIA--DLVPAPEAEAAIR---------- 50
Query: 70 KKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
VL K D++ + + + T IL+NNA
Sbjct: 51 NLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCDILVNNA 90
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 66.4 bits (163), Expect = 2e-13
Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 11/110 (10%)
Query: 1 MSASKAVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMAC-RDVEKAETTASEIR 59
+ A S + +TG G+G ++ L+ G V ++ + T R
Sbjct: 12 LEAQTQGPGSMQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHER 71
Query: 60 KHFEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ +D+A F+S CA+ + V +LINNA
Sbjct: 72 ----------DAGRDFKAYAVDVADFESCERCAEKVLADFGKVDVLINNA 111
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 66.0 bits (162), Expect = 2e-13
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
RL GKT ++TG GIGK A L GA VI++ + E A+ A+ I
Sbjct: 3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI------------ 50
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ D++ S++ +I + IL+NNA
Sbjct: 51 -GKKARAIAADISDPGSVKALFAEIQALTGGIDILVNNA 88
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 66.1 bits (162), Expect = 3e-13
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 12 LDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMA-CRDVEKAETTASEIRKHFEVATSEDK 70
L GK ++TG +GIG A L GA +++ D + E + + +
Sbjct: 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGL---------AAQ 52
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+VL DL+ +++R + + + IL+NNA
Sbjct: 53 HGVKVLYDGADLSKGEAVRGLVDNAVRQMGRIDILVNNA 91
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 66.0 bits (162), Expect = 3e-13
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 11/100 (11%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIM-ACRDVEKAETTASEIRKHFEVATSED 69
+L GKT I+TG + G+GK A L +GA +++ + TA E +
Sbjct: 2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFK---------- 51
Query: 70 KKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
V++ K D+ + + + + + + IL+NNA
Sbjct: 52 AAGINVVVAKGDVKNPEDVENMVKTAMDAFGRIDILVNNA 91
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 66.0 bits (162), Expect = 3e-13
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 12/99 (12%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
L G+T ++TG +GIG+ A GA V+ R + + A EI
Sbjct: 28 SLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEIA----------D 76
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
G DLA + + A+++ T V +L+NNA
Sbjct: 77 GGGSAEAVVADLADLEGAANVAEELAATRR-VDVLVNNA 114
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 65.4 bits (160), Expect = 4e-13
Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 11/101 (10%)
Query: 9 ASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSE 68
+ TV + G IG A+ G V R+ EK +EI
Sbjct: 2 SLTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIE--------- 52
Query: 69 DKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
G ++ + LD + + A + + I N
Sbjct: 53 -AAGGRIVARSLDARNEDEVTAFLNAA-DAHAPLEVTIFNV 91
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 65.7 bits (161), Expect = 4e-13
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 9/99 (9%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
KT+I+TG N GIG + + GA V + R A ++ K +
Sbjct: 11 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGK---------E 61
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ + D+++ + Q I+ + LI NA
Sbjct: 62 FGVKTKAYQCDVSNTDIVTKTIQQIDADLGPISGLIANA 100
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 65.2 bits (160), Expect = 5e-13
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 13/98 (13%)
Query: 12 LDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKK 71
L+GK ++TG + GIGK A+ L GAKVI A+ + +
Sbjct: 7 LEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLG------------ 54
Query: 72 PGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
L++ + +SI + I V IL+NNA
Sbjct: 55 -DNGKGMALNVTNPESIEAVLKAITDEFGGVDILVNNA 91
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 65.4 bits (160), Expect = 5e-13
Identities = 21/100 (21%), Positives = 30/100 (30%), Gaps = 10/100 (10%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
L K VI GIG T++ L K + VE A + +
Sbjct: 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPK------- 54
Query: 71 KPGEVLIKKLDL-ASFKSIRDCAQDINQTEANVHILINNA 109
+ D+ + + I V ILIN A
Sbjct: 55 --VNITFHTYDVTVPVAESKKLLKKIFDQLKTVDILINGA 92
Score = 27.6 bits (62), Expect = 3.0
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 8/55 (14%)
Query: 131 KNVNVYAVHPGIVKTELGRYMDDTYFPGARTLGRVLMWWWMKTPEQGAQTTLHCA 185
V Y+++PGI +T L + V QT+ C
Sbjct: 172 TGVTAYSINPGITRTPLVHTFNSWL--------DVEPRVAELLLSHPTQTSEQCG 218
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 65.6 bits (161), Expect = 5e-13
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
L+ + I+TG +GIG+ TA+ GA V++A + + A A+EI
Sbjct: 24 DLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI------------ 71
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ ++D++S K + V +L+NNA
Sbjct: 72 -GSKAFGVRVDVSSAKDAESMVEKTTAKWGRVDVLVNNA 109
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 65.2 bits (160), Expect = 5e-13
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 13/100 (13%)
Query: 10 SRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSED 69
+ L GKTVIITG G+G A+ GA+V++A E+ TA E+
Sbjct: 1 NDLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL----------- 49
Query: 70 KKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ LD+ + + + +V L+NNA
Sbjct: 50 --GDAARYQHLDVTIEEDWQRVVAYAREEFGSVDGLVNNA 87
Score = 28.6 bits (65), Expect = 1.6
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 131 KNVNVYAVHPGIVKTELGRYMDDTYFPGART---LGRV 165
+ V +VHPG+ T + G +GRV
Sbjct: 172 DRIRVNSVHPGMTYTPMTAETGIRQGEGNYPNTPMGRV 209
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 65.3 bits (160), Expect = 5e-13
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 12 LDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKK 71
L G+ ++TG GIG+ A+ + GA V + +K + A+++
Sbjct: 25 LTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL------------- 71
Query: 72 PGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+V + +L+ KSI+ A+ + + IL+NNA
Sbjct: 72 GKDVFVFSANLSDRKSIKQLAEVAEREMEGIDILVNNA 109
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 65.3 bits (160), Expect = 5e-13
Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 11/110 (10%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIM-ACRDVEKAETTASEIRKHFEVATSED 69
+ +IT G+GK + L G V + D ET +
Sbjct: 4 GRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYK---------- 53
Query: 70 KKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNAVYCILSNNIL 119
+ + D+ + + ++ + LINNA + L
Sbjct: 54 DVEERLQFVQADVTKKEDLHKIVEEAMSHFGKIDFLINNAGPYVFERKKL 103
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 64.9 bits (159), Expect = 6e-13
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 9/98 (9%)
Query: 12 LDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKK 71
+ GK ++T ++G+G +A L GA++++ R+ EK E AS I
Sbjct: 5 IQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIA--------SLVS 56
Query: 72 PGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+V I D+ I + IL+ +
Sbjct: 57 GAQVDIVAGDIREPGDIDRLFEKARDLGG-ADILVYST 93
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 64.8 bits (159), Expect = 6e-13
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 14/95 (14%)
Query: 15 KTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKKPGE 74
+ VI+TG GIGK G KV D +++ A E
Sbjct: 3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKER--------------PN 48
Query: 75 VLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ D+A +++ + + + +L+NNA
Sbjct: 49 LFYFHGDVADPLTLKKFVEYAMEKLQRIDVLVNNA 83
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 64.9 bits (159), Expect = 7e-13
Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 13/100 (13%)
Query: 10 SRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSED 69
GK I+ G G+G T + L GA+V++ R+ E
Sbjct: 4 GNYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF----------- 52
Query: 70 KKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
V + D+A I QT + +L NA
Sbjct: 53 --GPRVHALRSDIADLNEIAVLGAAAGQTLGAIDLLHINA 90
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 64.9 bits (159), Expect = 8e-13
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
L+GK +ITG +G G+ A+ GAKV++ RD AE A EI
Sbjct: 6 SLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI------------ 53
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
L D++ + + V IL+NNA
Sbjct: 54 -GDAALAVAADISKEADVDAAVEAALSKFGKVDILVNNA 91
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 64.5 bits (158), Expect = 8e-13
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 13/100 (13%)
Query: 10 SRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSED 69
RL+GK+ +ITG GIG+ A+ GA V +A D+E+A A+EI
Sbjct: 4 KRLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIG---------- 53
Query: 70 KKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
++D+ SI + + IL+NNA
Sbjct: 54 ---PAAYAVQMDVTRQDSIDAAIAATVEHAGGLDILVNNA 90
Score = 27.9 bits (63), Expect = 2.4
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 131 KNVNVYAVHPGIVKTELGRYMDDTY 155
+NV A+ PG+V E +D +
Sbjct: 176 HRINVNAIAPGVVDGEHWDGVDALF 200
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 64.9 bits (159), Expect = 9e-13
Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 10/100 (10%)
Query: 10 SRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSED 69
SRL+GK I+TG ++GIG+ A GAKV++ R+ EI
Sbjct: 4 SRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGG-------- 55
Query: 70 KKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
GE D+ + + + NNA
Sbjct: 56 --GGEAAALAGDVGDEALHEALVELAVRRFGGLDTAFNNA 93
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 64.5 bits (158), Expect = 9e-13
Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 11/100 (11%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMAC-RDVEKAETTASEIRKHFEVATSED 69
+ + +TG GIG Q L+ G +V+ C + + + +
Sbjct: 10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQK---------- 59
Query: 70 KKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ + ++ + S + + + +L+NNA
Sbjct: 60 ALGFDFYASEGNVGDWDSTKQAFDKVKAEVGEIDVLVNNA 99
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 64.1 bits (157), Expect = 9e-13
Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 16/95 (16%)
Query: 15 KTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKKPGE 74
++ITG ++G+G A+ G + R K T + +
Sbjct: 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLS-------------NN 48
Query: 75 VLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
V + DLAS + + + Q ++ ++++A
Sbjct: 49 VGYRARDLASHQEVEQLFE---QLDSIPSTVVHSA 80
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 64.5 bits (158), Expect = 9e-13
Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 13/99 (13%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
L G+ I+TG + GIG A+ L GA V +A DV A+ + +
Sbjct: 9 DLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLE----------- 57
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
++D+ S+ Q +L NA
Sbjct: 58 --NGGFAVEVDVTKRASVDAAMQKAIDALGGFDLLCANA 94
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 64.5 bits (158), Expect = 1e-12
Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 17/109 (15%)
Query: 1 MSASKAVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRK 60
M+ + + K V+ITG ++GIG+ A+ G +++ R VE+ +
Sbjct: 4 MTGGQQM-GRGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALNLP--- 59
Query: 61 HFEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
L ++D+ + + ++NNA
Sbjct: 60 -------------NTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVNNA 95
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 64.1 bits (157), Expect = 1e-12
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 11/101 (10%)
Query: 10 SRLDGKTVIITGCNTGIGKVTAQTLYGIGAKV-IMACRDVEKAETTASEIRKHFEVATSE 68
L GK V+ITG + GIG TA+ GAKV + + + T + +R
Sbjct: 3 PDLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMR--------- 53
Query: 69 DKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
G+ DLA+ ++ + + + +LINNA
Sbjct: 54 -ADGGDAAFFAADLATSEACQQLVDEFVAKFGGIDVLINNA 93
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 64.1 bits (157), Expect = 1e-12
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 11/99 (11%)
Query: 12 LDGKTVIITGCNTGIGKVTAQTLYGIGAKV-IMACRDVEKAETTASEIRKHFEVATSEDK 70
L + ++TG + GIG+ A L GAKV + A+ + I
Sbjct: 26 LTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAA--------- 76
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
GE K D++ + + + + +L+NNA
Sbjct: 77 -GGEAFAVKADVSQESEVEALFAAVIERWGRLDVLVNNA 114
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 64.0 bits (157), Expect = 1e-12
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 12 LDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKK 71
L GK ++TG GIG+ A+ L G+ VI+ E+A+ A EI K
Sbjct: 5 LQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIAN---------KY 55
Query: 72 PGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ +++L S +SI ++I + IL+NNA
Sbjct: 56 GVKAHGVEMNLLSEESINKAFEEIYNLVDGIDILVNNA 93
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 64.0 bits (157), Expect = 1e-12
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 12 LDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMAC-RDVEKAETTASEIRKHFEVATSEDK 70
L GK ++TG + GIG+ A L GA V++ + +KA EI+ K
Sbjct: 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIK----------K 51
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ + + D+A+ + + + + V IL+NNA
Sbjct: 52 LGSDAIAVRADVANAEDVTNMVKQTVDVFGQVDILVNNA 90
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 63.7 bits (156), Expect = 1e-12
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 14/96 (14%)
Query: 14 GKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKKPG 73
V+ITG + GIG+ TA+ L+ G +V + RD ++ + A+E+
Sbjct: 5 KGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAEL--------------E 50
Query: 74 EVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
L D+ + + + L+NNA
Sbjct: 51 GALPLPGDVREEGDWARAVAAMEEAFGELSALVNNA 86
Score = 27.5 bits (62), Expect = 3.2
Identities = 8/28 (28%), Positives = 9/28 (32%)
Query: 130 GKNVNVYAVHPGIVKTELGRYMDDTYFP 157
NV V V PG V T +
Sbjct: 170 EANVRVVNVLPGSVDTGFAGNTPGQAWK 197
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 63.7 bits (156), Expect = 2e-12
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACR-DVEKAETTASEIRKHFEVATSED 69
L+GK V+ITG +TG+GK A AKV++ R ++A + EI+
Sbjct: 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIK---------- 53
Query: 70 KKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
K GE + K D+ + + Q + + ++INNA
Sbjct: 54 KVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNA 93
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 63.3 bits (155), Expect = 2e-12
Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 15/99 (15%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
RL K V+ITG GIG+ T + GA+++ + A +
Sbjct: 2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV------------ 49
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+D+A S+ + + +++ A
Sbjct: 50 ---GAHPVVMDVADPASVERGFAEALAHLGRLDGVVHYA 85
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 63.3 bits (155), Expect = 2e-12
Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 11/99 (11%)
Query: 12 LDGKTVIITGCNTGIGKVTAQTLYGIGAKV-IMACRDVEKAETTASEIRKHFEVATSEDK 70
K+ ++TG + GIG+ A L G V + EKAE EI+
Sbjct: 2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAK--------- 52
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ + ++A ++ +++ ++ +L+NNA
Sbjct: 53 -GVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNA 90
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 63.7 bits (156), Expect = 2e-12
Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 13/100 (13%)
Query: 10 SRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSED 69
+RL GK ++TG +G+G + L G GAKV + + + A+E+
Sbjct: 2 NRLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL----------- 50
Query: 70 KKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ + D++S + + +++L+NNA
Sbjct: 51 --GERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVLVNNA 88
Score = 27.4 bits (62), Expect = 3.7
Identities = 6/42 (14%), Positives = 13/42 (30%)
Query: 126 YAIPGKNVNVYAVHPGIVKTELGRYMDDTYFPGARTLGRVLM 167
G + V ++HP + T + + L +
Sbjct: 169 CRKQGYAIRVNSIHPDGIYTPMMQASLPKGVSKEMVLHDPKL 210
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 63.7 bits (156), Expect = 2e-12
Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 13/100 (13%)
Query: 10 SRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSED 69
RL+ K +ITG +GIG A+ GA+V + R + + +EI
Sbjct: 25 QRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI----------- 73
Query: 70 KKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
G + + D A+ + + + + +L NA
Sbjct: 74 --GGGAVGIQADSANLAELDRLYEKVKAEAGRIDVLFVNA 111
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 63.4 bits (155), Expect = 2e-12
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 12/98 (12%)
Query: 12 LDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKK 71
L GKT ++TG +GIG AQ L GA +++ +EI +H
Sbjct: 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLN--GFGDPAPALAEIARH---------- 49
Query: 72 PGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ + DL+ I + V IL+NNA
Sbjct: 50 GVKAVHHPADLSDVAQIEALFALAEREFGGVDILVNNA 87
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 63.3 bits (155), Expect = 3e-12
Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 14/102 (13%)
Query: 8 SASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATS 67
+ +R GK V++TG GIG + GA+V++ +D E+
Sbjct: 3 TGTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL--------- 53
Query: 68 EDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ D+ ++ + + + ++NNA
Sbjct: 54 -----PGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVVNNA 90
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 63.4 bits (155), Expect = 3e-12
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 17/114 (14%)
Query: 1 MSASKAVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACR-DVEKAETTASEIR 59
M+ + S + +ITG IG A L+ G +V++ R A+ +E+
Sbjct: 1 MNET---SHEASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAEL- 56
Query: 60 KHFEVATSEDKKPGEVLIKKLDLASFKSIRDCAQD-INQTEAN---VHILINNA 109
+ G ++ K DL+ S+ DC +D I+ + +L+NNA
Sbjct: 57 --------NAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNA 102
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 62.6 bits (153), Expect = 4e-12
Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 17/102 (16%)
Query: 15 KTVIITGCNTGIGKVTAQTLYGIGAK-------VIMACRDVEKAETTASEIRKHFEVATS 67
++ITG GIG+ A ++++ R E + E R
Sbjct: 3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECR-------- 54
Query: 68 EDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ D++ +R I + ++ L+NNA
Sbjct: 55 --AEGALTDTITADISDMADVRRLTTHIVERYGHIDCLVNNA 94
Score = 27.5 bits (62), Expect = 2.8
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 130 GKNVNVYAVHPGIVKTELGRYMDDTY 155
NV + V PG V T + +DD
Sbjct: 178 KCNVRITDVQPGAVYTPMWGKVDDEM 203
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 62.6 bits (153), Expect = 4e-12
Identities = 32/98 (32%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Query: 12 LDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKK 71
L GKT ++TG GIGK A +L GA V++ R E T EIR + A
Sbjct: 8 LKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDA------ 61
Query: 72 PGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ DL QD+ + V ILINN
Sbjct: 62 --ILQPVVADL----GTEQGCQDVIEKYPKVDILINNL 93
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 62.6 bits (153), Expect = 5e-12
Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 12/102 (11%)
Query: 11 RLDGKTVIITGCNT--GIGKVTAQTLYGIGAKVIMAC-RDVEKAETTASEIRKHFEVATS 67
L GK V++TG + G+G A+ +GA V + + AE E+ K + +
Sbjct: 17 SLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGI--- 73
Query: 68 EDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ K + S++S +D+ + I NA
Sbjct: 74 ------KAKAYKCQVDSYESCEKLVKDVVADFGQIDAFIANA 109
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 62.6 bits (153), Expect = 5e-12
Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 13/108 (12%)
Query: 2 SASKAVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKH 61
+++ L GK I+TG GIG A+ L G V+ A D + A+ A++I
Sbjct: 17 QGPGSMNHPDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI--- 73
Query: 62 FEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
++D++ + I V L+ NA
Sbjct: 74 ----------GCGAAACRVDVSDEQQIIAMVDACVAAFGGVDKLVANA 111
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 62.9 bits (153), Expect = 6e-12
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Query: 8 SASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATS 67
+ RL G TV ITG + GIGK A GA +++A + + I + A
Sbjct: 39 NTGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTI---YTAAEE 95
Query: 68 EDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ G+ L +D+ + I + + + IL+NNA
Sbjct: 96 IEAVGGKALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNA 137
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 62.2 bits (152), Expect = 6e-12
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 11/101 (10%)
Query: 10 SRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIM-ACRDVEKAETTASEIRKHFEVATSE 68
++ I+TG GIG A+ L G + + D E +E+
Sbjct: 25 TQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELS--------- 75
Query: 69 DKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
V+ + DLA S + + + L+NNA
Sbjct: 76 -GLGARVIFLRADLADLSSHQATVDAVVAEFGRIDCLVNNA 115
Score = 26.4 bits (59), Expect = 8.2
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 130 GKNVNVYAVHPGIVKTE 146
+ V+ V PGI++++
Sbjct: 204 ETGIAVFEVRPGIIRSD 220
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 62.2 bits (152), Expect = 7e-12
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 17/111 (15%)
Query: 2 SASKAVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKH 61
+++ S +RL K IITG GIG+ TA+ GAKV++A + + + I
Sbjct: 4 TSTPDSSTNRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNI--- 60
Query: 62 FEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEAN---VHILINNA 109
P + D+ + D ++ T A + I+ N
Sbjct: 61 --------GSPDVISFVHCDVTKDE---DVRNLVDTTIAKHGKLDIMFGNV 100
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 62.2 bits (152), Expect = 7e-12
Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 20/109 (18%)
Query: 1 MSASKAVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRK 60
M K I+TG ++GIG L GAKV+ D + + +
Sbjct: 1 MGHHHHHHMEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHFK- 59
Query: 61 HFEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+D+ + + +++ + + + IL+NNA
Sbjct: 60 -------------------IDVTNEEEVKEAVEKTTKKYGRIDILVNNA 89
Score = 28.7 bits (65), Expect = 1.5
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 130 GKNVNVYAVHPGIVKTEL-GRYMDDTYFPGARTLGRVLMWWWMKTP 174
+ AV PG + T + + + R + W + P
Sbjct: 172 APKIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQHP 217
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 61.8 bits (151), Expect = 8e-12
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 12 LDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMA-CRDVEKAETTASEIRKHFEVATSEDK 70
K ++TG + G+GK A L G +++ R + A TA EI K
Sbjct: 2 EQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIE----------K 51
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+VL+ K ++ I++ Q I++T + + +NNA
Sbjct: 52 LGVKVLVVKANVGQPAKIKEMFQQIDETFGRLDVFVNNA 90
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 61.8 bits (151), Expect = 8e-12
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Query: 17 VIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKKPGEVL 76
V++TG G G+ + G KVI R E+ + E+ +
Sbjct: 3 VLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL-------------GDNLY 49
Query: 77 IKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
I +LD+ + +I + + N+ IL+NNA
Sbjct: 50 IAQLDVRNRAAIEEMLASLPAEWCNIDILVNNA 82
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 61.8 bits (151), Expect = 1e-11
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 13/99 (13%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
RL GK +++G G+G + + GAKV+ E+ + A+E+
Sbjct: 4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL------------ 51
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
LD+ + +H+L+NNA
Sbjct: 52 -ADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNA 89
Score = 27.5 bits (62), Expect = 3.3
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 131 KNVNVYAVHPGIVKTELGRYMDDTYFPGARTLGRVLMWWWMKTPEQGAQTTLHCALDE 188
+ V ++HPG+VKT + ++ + F A LGR P + + ++ A DE
Sbjct: 174 SGIRVNSIHPGLVKTPMTDWVPEDIFQTA--LGRAA------EPVEVSNLVVYLASDE 223
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 61.0 bits (149), Expect = 1e-11
Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 19/100 (19%)
Query: 10 SRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSED 69
RLDGK +I+T GIG+ A GAKVI + K +
Sbjct: 2 GRLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKY------------ 49
Query: 70 KKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ + LD+ K I A ++ + + +L N A
Sbjct: 50 ---PGIQTRVLDVTKKKQIDQFANEVER----LDVLFNVA 82
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 61.4 bits (150), Expect = 1e-11
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 13/99 (13%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
L+ K IITG GIG T++ L GA+V++A A+ +
Sbjct: 8 ELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV------------ 55
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ +DL + S+R T + I+ NNA
Sbjct: 56 -GRGAVHHVVDLTNEVSVRALIDFTIDTFGRLDIVDNNA 93
Score = 26.3 bits (59), Expect = 8.3
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 131 KNVNVYAVHPGIVKTELGRYMDD 153
V A+ PG+V+T
Sbjct: 180 HGVRCNAIAPGLVRTPRLEVGLP 202
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 60.2 bits (147), Expect = 3e-11
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 17/109 (15%)
Query: 1 MSASKAVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRK 60
M+ L GKT +ITG ++GIG A+ L+ +G+KVI++ + EK ++ + +
Sbjct: 1 MAHHHHHHMIDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL-- 58
Query: 61 HFEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
I+ +LA+ + + + + IL+ NA
Sbjct: 59 -----------KDNYTIEVCNLANKEECSNLISKTSN----LDILVCNA 92
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 60.5 bits (147), Expect = 3e-11
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 16/100 (16%)
Query: 15 KTVIITGCNTGIGKVTAQTLYGI---GAKVIMACRDVEKAETTASEIRKHFEVATSEDKK 71
+++ITGCN G+G + L + + CR+ E+A+ + H
Sbjct: 22 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNH---------- 71
Query: 72 PGEVLIKKLDLASFKSIRDCAQDINQTEANVHI--LINNA 109
+ I ++DL +F + DI + + L NNA
Sbjct: 72 -SNIHILEIDLRNFDAYDKLVADIEGVTKDQGLNVLFNNA 110
Score = 30.4 bits (69), Expect = 0.38
Identities = 10/71 (14%), Positives = 22/71 (30%), Gaps = 19/71 (26%)
Query: 129 PGKNVNVYAVHPGIVKTELGRYMDDTYFPGARTLGRVLMWWWMKTPEQGAQTTLHCALDE 188
+ + ++HPG VKT++G A + + +
Sbjct: 208 YPQRIMCVSLHPGWVKTDMGG-------SSA-----------PLDVPTSTGQIVQ-TISK 248
Query: 189 GAAKETGLYYS 199
K+ G + +
Sbjct: 249 LGEKQNGGFVN 259
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 59.9 bits (146), Expect = 3e-11
Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 13/99 (13%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
+L + I+TG ++G+G + L GA V+ E A+E+
Sbjct: 4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL------------ 51
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
V + D+ + Q +VH L+N A
Sbjct: 52 -GAAVRFRNADVTNEADATAALAFAKQEFGHVHGLVNCA 89
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 59.8 bits (146), Expect = 3e-11
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 15 KTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKKPGE 74
K ++TG GIGK A L G V +A + A+ ASEI + G
Sbjct: 3 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEIN----------QAGGH 52
Query: 75 VLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ K+D++ + + +T +++NNA
Sbjct: 53 AVAVKVDVSDRDQVFAAVEQARKTLGGFDVIVNNA 87
Score = 27.1 bits (61), Expect = 4.1
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 131 KNVNVYAVHPGIVKTELGRYMDD 153
+ V PGIVKT + +D
Sbjct: 173 LGITVNGYCPGIVKTPMWAEIDR 195
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 59.9 bits (146), Expect = 4e-11
Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 13/99 (13%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
+L G+ +ITG +G+G+ GA+V + + E+
Sbjct: 2 KLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH------------ 49
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
G + D+ S + + A+ + LI NA
Sbjct: 50 -GGNAVGVVGDVRSLQDQKRAAERCLAAFGKIDTLIPNA 87
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 59.7 bits (145), Expect = 4e-11
Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 17/99 (17%)
Query: 15 KTVIITGCNTGIGKVTAQTL--YGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKKP 72
+V++TG N GIG Q L +I RDVEKA S K
Sbjct: 4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI-------------KD 50
Query: 73 GEVLIKKLDLASFKSIRDCAQDINQTEANVHI--LINNA 109
V + L + KS+ + + + + LINNA
Sbjct: 51 SRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNA 89
Score = 31.2 bits (71), Expect = 0.19
Identities = 14/70 (20%), Positives = 20/70 (28%), Gaps = 19/70 (27%)
Query: 130 GKNVNVYAVHPGIVKTELGRYMDDTYFPGARTLGRVLMWWWMKTPEQGAQTTLHCALDEG 189
NV V PG V+T LG A T EQ + ++
Sbjct: 192 DDNVLVVNFCPGWVQTNLGG-------KNA-----------ALTVEQSTAELISSF-NKL 232
Query: 190 AAKETGLYYS 199
G ++
Sbjct: 233 DNSHNGRFFM 242
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 59.6 bits (145), Expect = 5e-11
Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 11/101 (10%)
Query: 10 SRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSED 69
+ ++G+ ++TG + GIG+ A L GA V + R ++ A E +
Sbjct: 1 APMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQ---------- 50
Query: 70 KKPGEVLIKKLDLASFKSIRDCAQDINQTEAN-VHILINNA 109
G+ + D + +R + +++ + + +L+NNA
Sbjct: 51 SLGGQCVPVVCDSSQESEVRSLFEQVDREQQGRLDVLVNNA 91
Score = 26.0 bits (58), Expect = 9.5
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 130 GKNVNVYAVHPGIVKTE--LGRYMDDTYFPGARTLGRVLMWWWMKTPEQGAQTTLHCALD 187
V+ ++ PGIV+TE + + +T E + + A D
Sbjct: 181 RHGVSCVSLWPGIVQTELLKEHMAKEEVLQDPVLKQFKSAFSSAETTELSGKCVVALATD 240
Query: 188 EGAAKETG 195
+G
Sbjct: 241 PNILSLSG 248
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 59.5 bits (145), Expect = 5e-11
Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 19/99 (19%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
R K V+ITG + GIG + +V+ R ++ +
Sbjct: 25 RNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSAD----------------- 67
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
++ D++ ++ ++ + + L+NNA
Sbjct: 68 --PDIHTVAGDISKPETADRIVREGIERFGRIDSLVNNA 104
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 59.5 bits (145), Expect = 5e-11
Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 11/103 (10%)
Query: 8 SASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMA-CRDVEKAETTASEIRKHFEVAT 66
S R +T+++ G IG+ A GA V++ E A T +EI
Sbjct: 2 SLQRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIE------- 54
Query: 67 SEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
K L K DL + + +H L++ A
Sbjct: 55 ---KLGRSALAIKADLTNAAEVEAAISAAADKFGEIHGLVHVA 94
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 59.2 bits (144), Expect = 8e-11
Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 13/100 (13%)
Query: 15 KTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKKPGE 74
K ++TG ++G G+ A+ G VI R E + P
Sbjct: 6 KVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEA-------------LDDLVAAYPDR 52
Query: 75 VLIKKLDLASFKSIRDCAQDINQTEANVHILINNAVYCIL 114
LD+ + I A D+ V +L+NNA +
Sbjct: 53 AEAISLDVTDGERIDVVAADVLARYGRVDVLVNNAGRTQV 92
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 58.7 bits (143), Expect = 9e-11
Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 11/96 (11%)
Query: 15 KTVIITGCNTGIGKVTAQTLYGIGAKVIMA-CRDVEKAETTASEIRKHFEVATSEDKKPG 73
V++TG + GIGK A +L G KV++ R + AE + +I + G
Sbjct: 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY----------GG 51
Query: 74 EVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ + D++ + + + +++NNA
Sbjct: 52 QAITFGGDVSKEADVEAMMKTAIDAWGTIDVVVNNA 87
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 58.3 bits (142), Expect = 1e-10
Identities = 23/100 (23%), Positives = 36/100 (36%), Gaps = 16/100 (16%)
Query: 10 SRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSED 69
GK V++TG GIG+ AQ GA V + + + A I F
Sbjct: 2 GLFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLR-PEGKEVAEAIGGAF------- 53
Query: 70 KKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
++DL + ++ V +L+NNA
Sbjct: 54 --------FQVDLEDERERVRFVEEAAYALGRVDVLVNNA 85
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 58.3 bits (142), Expect = 1e-10
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 22/110 (20%)
Query: 1 MSASKAVSAS-RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIR 59
M+A+ A ++V++TG N GIG AQ L G KV +
Sbjct: 1 MTATATEGAKPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAV---------------- 44
Query: 60 KHFEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
P + ++D+ ++ + + + V +L++NA
Sbjct: 45 ----THRGSG-APKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNA 89
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 57.9 bits (141), Expect = 2e-10
Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 9/96 (9%)
Query: 14 GKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKKPG 73
+ I+TG ++G G A G +V E E TA
Sbjct: 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWH---------AYAD 52
Query: 74 EVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+VL + D+A + + + +L+NNA
Sbjct: 53 KVLRVRADVADEGDVNAAIAATMEQFGAIDVLVNNA 88
Score = 27.4 bits (62), Expect = 3.4
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 131 KNVNVYAVHPGIVKTELGRYMDDTYFPGARTLGRVLM 167
+ AV PG+++T + ++ D + L R+
Sbjct: 176 SGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARIPQ 212
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 58.0 bits (141), Expect = 2e-10
Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 13/99 (13%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
+ G +ITG +G+G TA+ L G GA ++ E A ++
Sbjct: 9 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL------------ 56
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ D+ S K ++ V + +N A
Sbjct: 57 -GNNCVFAPADVTSEKDVQTALALAKGKFGRVDVAVNCA 94
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 57.9 bits (141), Expect = 2e-10
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 10/96 (10%)
Query: 15 KTVIITGCNTGIGKVTAQTLYGIGAKVIMAC-RDVEKAETTASEIRKHFEVATSEDKKPG 73
+ +ITG + GIG+ A L G + + ++ EKAE A E R+
Sbjct: 2 RKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPL-------- 53
Query: 74 EVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
V + +L ++ + + L+NNA
Sbjct: 54 -VAVLGANLLEAEAATALVHQAAEVLGGLDTLVNNA 88
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 57.2 bits (139), Expect = 3e-10
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 12/98 (12%)
Query: 14 GKTVIITGCNTGIGKVTAQTLYGIGAKVIMA--CRDVEKAETTASEIRKHFEVATSEDKK 71
K ++TG GIG+ ++ L G + +A + E+A T I
Sbjct: 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIE----------AA 51
Query: 72 PGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ + LD+ + + + +L+NNA
Sbjct: 52 DQKAVFVGLDVTDKANFDSAIDEAAEKLGGFDVLVNNA 89
Score = 27.9 bits (63), Expect = 2.3
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 131 KNVNVYAVHPGIVKTELGRYMDD 153
K V A PGIV T + +D
Sbjct: 175 KGHTVNAYAPGIVGTGMWEQIDA 197
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 57.2 bits (138), Expect = 4e-10
Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 18/98 (18%)
Query: 12 LDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKK 71
+ GK ++ +G +A L G GA+V++ R ++KA+ A + K F+V
Sbjct: 117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVN------ 170
Query: 72 PGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ + A S + + H +
Sbjct: 171 -----VTAAETADDASRAEAVKG-------AHFVFTAG 196
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 56.9 bits (138), Expect = 5e-10
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
L GKT+ I+G + GIG A+ + GA V + + E I + A ++
Sbjct: 6 SLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTI---YTAAKEIEE 62
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
G+ L D+ ++ + + I +NNA
Sbjct: 63 AGGQALPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNA 101
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 56.5 bits (137), Expect = 5e-10
Identities = 14/98 (14%), Positives = 30/98 (30%), Gaps = 15/98 (15%)
Query: 14 GKTVIITGCNTGIGKVTAQTLYGIGAKVIM--ACRDVEKAETTASEIRKHFEVATSEDKK 71
GK +++TG + GIGK L+ + ++ R + +
Sbjct: 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY------------- 48
Query: 72 PGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
D+ ++ + + L+ NA
Sbjct: 49 GDRFFYVVGDITEDSVLKQLVNAAVKGHGKIDSLVANA 86
Score = 32.2 bits (74), Expect = 0.083
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 131 KNVNVYAVHPGIVKTELGRYMDDTYFPGARTLGRVLMWWWMK------TPEQGAQTTLHC 184
+ V AV PGIV T++ + + P + + ++ M+ +K A
Sbjct: 169 RQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLKENNQLLDSSVPATVYAKL 228
Query: 185 ALDEGAAKETG 195
AL G
Sbjct: 229 ALHGIPDGVNG 239
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 56.4 bits (137), Expect = 6e-10
Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 16/95 (16%)
Query: 15 KTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKKPGE 74
T I+T G +A L G V ++ + + +
Sbjct: 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYP------------ 49
Query: 75 VLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+L S + + + + V +L++N
Sbjct: 50 ----QLKPMSEQEPAELIEAVTSAYGQVDVLVSND 80
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 56.5 bits (137), Expect = 6e-10
Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 3/99 (3%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
L GKT+ ITG + GIG A GA V +A + I A + +
Sbjct: 3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTI---HSAAAAVNA 59
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
G+ L K D+ +R T + IL+NNA
Sbjct: 60 AGGQGLALKCDIREEDQVRAAVAATVDTFGGIDILVNNA 98
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 56.4 bits (137), Expect = 7e-10
Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 16/112 (14%)
Query: 1 MSASKAVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVI---MACRDVEKAETTASE 57
MS + L K ++I G +G +TA+T ++ +D + A E
Sbjct: 1 MSLT---KYHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDE 57
Query: 58 IRKHFEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ + +V + + DL++ + + + V I IN
Sbjct: 58 LE----------DQGAKVALYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTV 99
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 56.0 bits (136), Expect = 8e-10
Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 20/99 (20%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
GK V +TG GIG TA GAKV + + +
Sbjct: 4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQ------------------ 45
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ +D+A + Q + + L+N A
Sbjct: 46 --YPFATEVMDVADAAQVAQVCQRLLAETERLDALVNAA 82
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 56.0 bits (136), Expect = 9e-10
Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 21/106 (19%)
Query: 4 SKAVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFE 63
S + ++V++TG N GIG A+ G KV + R E E
Sbjct: 11 SSGLVPRSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPE----------- 59
Query: 64 VATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
L K D+ + + ++I +T V +LI NA
Sbjct: 60 ----------GFLAVKCDITDTEQVEQAYKEIEETHGPVEVLIANA 95
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 56.3 bits (136), Expect = 9e-10
Identities = 14/109 (12%), Positives = 33/109 (30%), Gaps = 9/109 (8%)
Query: 10 SRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACR-DVEKAETTASEIRKHFEVA--- 65
+ ++TG +G+ A+ L+ G V + +A ++ + +
Sbjct: 42 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAIT 101
Query: 66 -----TSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
++ P + F + +L+NNA
Sbjct: 102 VQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNA 150
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 55.6 bits (135), Expect = 1e-09
Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 21/100 (21%)
Query: 10 SRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSED 69
S L K VI+TG + GIG+ A+ G+KVI + E I
Sbjct: 4 SDLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIH-DPGEAKYDHIE---------- 52
Query: 70 KKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
D+ + ++ I + ++ +L+NNA
Sbjct: 53 ----------CDVTNPDQVKASIDHIFKEYGSISVLVNNA 82
Score = 27.1 bits (61), Expect = 3.8
Identities = 7/43 (16%), Positives = 11/43 (25%)
Query: 130 GKNVNVYAVHPGIVKTELGRYMDDTYFPGARTLGRVLMWWWMK 172
+ AV P + T L R + + W
Sbjct: 165 APLLRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGH 207
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 55.8 bits (135), Expect = 1e-09
Identities = 14/109 (12%), Positives = 33/109 (30%), Gaps = 9/109 (8%)
Query: 10 SRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACR-DVEKAETTASEIRKHFEVA--- 65
+ ++TG +G+ A+ L+ G V + +A ++ + +
Sbjct: 5 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAIT 64
Query: 66 -----TSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
++ P + F + +L+NNA
Sbjct: 65 VQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNA 113
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 55.3 bits (134), Expect = 2e-09
Identities = 15/99 (15%), Positives = 27/99 (27%), Gaps = 17/99 (17%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
L K ++TG G+G + L + R+ E A
Sbjct: 2 SLKKKIAVVTGATGGMGIEIVKDLSRDHIVYALG-RNPEHLAALAEIEG----------- 49
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
V + D+ + + V L++ A
Sbjct: 50 ----VEPIESDIVKEVLEEGGVDKLKNLDH-VDTLVHAA 83
Score = 27.1 bits (61), Expect = 3.6
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 128 IPGKNVNVYAVHPGIVKTELGRYMDD 153
+ V V PG T + + + D
Sbjct: 164 EANNGIRVSTVSPGPTNTPMLQGLMD 189
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 55.3 bits (134), Expect = 2e-09
Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 11/109 (10%)
Query: 2 SASKAVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMA-CRDVEKAETTASEIRK 60
S+ + ++ L GK + TG GIG+ A L GA V++ + AE +E++
Sbjct: 9 SSGPSDASKPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELK- 67
Query: 61 HFEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
K + + + D++ + + +++N+
Sbjct: 68 ---------KLGAQGVAIQADISKPSEVVALFDKAVSHFGGLDFVMSNS 107
Score = 26.8 bits (60), Expect = 5.3
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 130 GKNVNVYAVHPGIVKTELGRYMDDTYFPGA 159
K V V + PG VKT++ Y PG
Sbjct: 190 AKGVTVNCIAPGGVKTDMFDENSWHYAPGG 219
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 55.4 bits (134), Expect = 2e-09
Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 13/99 (13%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
+ +G + I++G G+G+ T + L+ G V++A EK + A E+
Sbjct: 27 QFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL------------ 74
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
++ S S+ + NQ + ++ +
Sbjct: 75 -GNRAEFVSTNVTSEDSVLAAIEAANQLGRLRYAVVAHG 112
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 54.9 bits (133), Expect = 2e-09
Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 15/99 (15%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
L ++ITG + +G A L G +VI++ R + +E+R+
Sbjct: 24 TLSSAPILITGASQRVGLHCALRLLEHGHRVIISYR---TEHASVTELRQ---------- 70
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ D + I + +++ +++NA
Sbjct: 71 --AGAVALYGDFSCETGIMAFIDLLKTQTSSLRAVVHNA 107
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 54.5 bits (132), Expect = 3e-09
Identities = 21/100 (21%), Positives = 30/100 (30%), Gaps = 21/100 (21%)
Query: 10 SRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSED 69
+GK ++TG GIG L GA+V +A R V
Sbjct: 24 QGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIA----------------- 66
Query: 70 KKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
L DL + + I++NNA
Sbjct: 67 ----ADLHLPGDLREAAYADGLPGAVAAGLGRLDIVVNNA 102
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 54.6 bits (132), Expect = 3e-09
Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 22/111 (19%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMA--CRDV----------EKAETTASEI 58
RL GK ITG G G+ A L GA ++ CR E+ + T +
Sbjct: 43 RLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLV 102
Query: 59 RKHFEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ ++ ++ D+ S++ + ++ IL++N
Sbjct: 103 EEQ----------GRRIIARQADVRDLASLQAVVDEALAEFGHIDILVSNV 143
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 54.5 bits (132), Expect = 3e-09
Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 11/110 (10%)
Query: 1 MSASKAVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMA-CRDVEKAETTASEIR 59
+ ++ L+GK ++TG GIG+ A L G KVI+ E AE + I+
Sbjct: 16 IPGPLGPQSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIK 75
Query: 60 KHFEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
K + K ++ + I ++ + + I+ +N+
Sbjct: 76 ----------KNGSDAACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNS 115
Score = 27.2 bits (61), Expect = 4.3
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 130 GKNVNVYAVHPGIVKTELGRYMDDTYFPGARTL 162
K + V V PG +KT++ + Y P L
Sbjct: 198 DKKITVNVVAPGGIKTDMYHAVCREYIPNGENL 230
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 53.3 bits (129), Expect = 7e-09
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 11/109 (10%)
Query: 2 SASKAVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMAC-RDVEKAETTASEIRK 60
+ + + K I+TG + GIG A L G V++ AE A +I
Sbjct: 15 TENLYFQSMMETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIE- 73
Query: 61 HFEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
G+ L + D++ ++R + V +L+NNA
Sbjct: 74 ---------AAGGKALTAQADVSDPAAVRRLFATAEEAFGGVDVLVNNA 113
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 52.2 bits (126), Expect = 2e-08
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 11/110 (10%)
Query: 1 MSASKAVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMA-CRDVEKAETTASEIR 59
+AS+ RLDGK ++TG GIG A L +GAKV++ + AE SEI+
Sbjct: 5 ENASETYIPGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIK 64
Query: 60 KHFEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ + K D+ I ++ I ++N+
Sbjct: 65 ----------ALGSDAIAIKADIRQVPEIVKLFDQAVAHFGHLDIAVSNS 104
Score = 27.5 bits (62), Expect = 3.5
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 130 GKNVNVYAVHPGIVKTELGRYMDDTYFPGA 159
K + V AV PG T++ + Y P
Sbjct: 187 DKKITVNAVAPGGTVTDMFHEVSHHYIPNG 216
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 52.2 bits (126), Expect = 2e-08
Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 11/101 (10%)
Query: 10 SRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMA-CRDVEKAETTASEIRKHFEVATSE 68
S D V++TG + GIG + G +V + + E A+ + I
Sbjct: 22 SMSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAIT--------- 72
Query: 69 DKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ GE + D+ + I +++ + L+NNA
Sbjct: 73 -ESGGEAVAIPGDVGNAADIAAMFSAVDRQFGRLDGLVNNA 112
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 52.2 bits (126), Expect = 2e-08
Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 31/101 (30%)
Query: 12 LDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKK 71
+ K V++ + GIG+ A L GA+V + R+ E + + V
Sbjct: 17 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRY----VVC------ 66
Query: 72 PGEVLIKKLDLASFKSIRDCAQDINQTEAN---VHILINNA 109
D +D++ V IL+ NA
Sbjct: 67 ------------------DLRKDLDLLFEKVKEVDILVLNA 89
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 52.7 bits (127), Expect = 2e-08
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 14/99 (14%)
Query: 12 LDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKK 71
LDGK ++TG GIG A+ GA V+ DV+ A + DK
Sbjct: 211 LDGKVAVVTGAARGIGATIAEVFARDGATVV--AIDVDGAAEDLKRV---------ADKV 259
Query: 72 PGEVLIKKLDLASFKSIRDCAQDINQTE-ANVHILINNA 109
G L LD+ + ++ + + V IL+NNA
Sbjct: 260 GGTAL--TLDVTADDAVDKITAHVTEHHGGKVDILVNNA 296
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 51.8 bits (125), Expect = 3e-08
Identities = 29/109 (26%), Positives = 42/109 (38%), Gaps = 17/109 (15%)
Query: 8 SASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMA-CRDVEKAETTASEIRKHFEVAT 66
+ S L GK ++TG + GIG+ A+ L GA V + E+AE T EI+
Sbjct: 1 ANSMLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQ------- 53
Query: 67 SEDKKPGEVLIKKLDLASFKSIRDCAQDINQT------EANVHILINNA 109
G +L S + ++ ILINNA
Sbjct: 54 ---SNGGSAFSIGANLESLHGVEALYSSLDNELQNRTGSTKFDILINNA 99
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 51.0 bits (123), Expect = 4e-08
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 11/103 (10%)
Query: 8 SASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMA-CRDVEKAETTASEIRKHFEVAT 66
++ L GKT +TG + GIG A+ L GA V + E+A+ SEI
Sbjct: 25 TSISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIE------- 77
Query: 67 SEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ G + + D ++I ++ + + IL+N+A
Sbjct: 78 ---QAGGRAVAIRADNRDAEAIEQAIRETVEALGGLDILVNSA 117
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 50.2 bits (121), Expect = 5e-08
Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 21/94 (22%)
Query: 16 TVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKKPGEV 75
V+ITG G+G A+ L G ++++ R A E+
Sbjct: 2 RVLITGATGGLGGAFARALK--GHDLLLSGRRAGALAELAREVG-------------ARA 46
Query: 76 LIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
L DLA + ++ + +L++
Sbjct: 47 L--PADLADELEAKALLEEAGP----LDLLVHAV 74
Score = 27.1 bits (61), Expect = 3.8
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 13/54 (24%)
Query: 130 GKNVNVYAVHPGIVKTELGRYMDDTYFPGARTLGRVLMWWWMKTPEQGAQTTLH 183
+ V++ V V T L P L +PE+ A+ L
Sbjct: 154 REGVHLVLVRLPAVATGL---WAPLGGPPKGAL----------SPEEAARKVLE 194
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 50.7 bits (122), Expect = 6e-08
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 2/101 (1%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMA--CRDVEKAETTASEIRKHFEVATSE 68
L GK ITG G G+ A L GA +I C + + +
Sbjct: 10 PLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLV 69
Query: 69 DKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ ++ ++ D+ +S+ Q + I++ NA
Sbjct: 70 EDIGSRIVARQADVRDRESLSAALQAGLDELGRLDIVVANA 110
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 50.4 bits (121), Expect = 7e-08
Identities = 11/107 (10%), Positives = 25/107 (23%), Gaps = 22/107 (20%)
Query: 3 ASKAVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHF 62
+S V K +++ G + +G + I +
Sbjct: 11 SSGLVPRGSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHSF------ 64
Query: 63 EVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ + + I+ + IN V + A
Sbjct: 65 ----------------TIKDSGEEEIKSVIEKINSKSIKVDTFVCAA 95
Score = 31.1 bits (71), Expect = 0.21
Identities = 9/41 (21%), Positives = 11/41 (26%), Gaps = 1/41 (2%)
Query: 126 YAIPGKNVNVYAVHPGIVKTELGR-YMDDTYFPGARTLGRV 165
+ P + T R YM D F L V
Sbjct: 176 NGGLPAGSTSLGILPVTLDTPTNRKYMSDANFDDWTPLSEV 216
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 50.3 bits (121), Expect = 8e-08
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 2/104 (1%)
Query: 8 SASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMA--CRDVEKAETTASEIRKHFEVA 65
S R+ K V++TG G G+ A L GA +I+ C D+E E + R E
Sbjct: 4 SMGRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAG 63
Query: 66 TSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+K + ++D+ ++ + + +++ NA
Sbjct: 64 LEVEKTGRKAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANA 107
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 50.2 bits (121), Expect = 8e-08
Identities = 25/115 (21%), Positives = 41/115 (35%), Gaps = 23/115 (20%)
Query: 8 SASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMA--CRDV-----------EKAETT 54
A L G+ ITG G G+ A L GA +I C V E + T
Sbjct: 9 QAGSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDET 68
Query: 55 ASEIRKHFEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
A + + L + LD+ ++R+ D + + +++ NA
Sbjct: 69 ARLVEDQ----------GRKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANA 113
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 50.2 bits (121), Expect = 9e-08
Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 25/98 (25%)
Query: 15 KTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKKPGE 74
+ ++TG + GIG+ A+ L G +V +A R+ E+A +
Sbjct: 3 RKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSL------------------G 44
Query: 75 VLIKKLDLASFKSIRDCAQDINQTEAN---VHILINNA 109
+ DL D + + +H+L++ A
Sbjct: 45 AVPLPTDL----EKDDPKGLVKRALEALGGLHVLVHAA 78
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 50.2 bits (121), Expect = 1e-07
Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 22/114 (19%)
Query: 8 SASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIM--ACRDV----------EKAETTA 55
S + +GKT +ITG G+G+ A L GA + + C + + T
Sbjct: 4 SMADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETV 63
Query: 56 SEIRKHFEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ + K + K+D+ ++ + T + I I NA
Sbjct: 64 ALVEKT----------GRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNA 107
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 49.5 bits (119), Expect = 2e-07
Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 22/111 (19%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMA--CRDV----------EKAETTASEI 58
+++GK ITG G G+ A TL GA +I C+ + + T ++
Sbjct: 25 KVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQV 84
Query: 59 RKHFEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
++ ++D+ F +++ D + I++ NA
Sbjct: 85 EAL----------GRRIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANA 125
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 49.8 bits (119), Expect = 2e-07
Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 28/119 (23%)
Query: 3 ASKAVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIM---------ACRDVEKAET 53
S + R DG+ ++TG G+G+ A GAKV++ A+
Sbjct: 8 MSSSDGKLRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADI 67
Query: 54 TASEIRKHFEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEAN---VHILINNA 109
EIRK A +A + S+ D A+ I V IL+NNA
Sbjct: 68 VVDEIRKAGGEA----------------VADYNSVIDGAKVIETAIKAFGRVDILVNNA 110
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 49.1 bits (118), Expect = 2e-07
Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 23/112 (20%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMA--CRDV-----------EKAETTASE 57
+L+G+ ITG G G+ A + GA +I + + T
Sbjct: 8 KLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRL 67
Query: 58 IRKHFEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ ++ +D F +R D + I++ NA
Sbjct: 68 VEAA----------NRRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANA 109
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 48.7 bits (117), Expect = 3e-07
Identities = 15/97 (15%), Positives = 26/97 (26%), Gaps = 23/97 (23%)
Query: 14 GKTVIITGCNTGIGKVTAQTLYGIGAKVIMACR-DVEKAETTASEIRKHFEVATSEDKKP 72
++TG + GIGK + L ++ + I
Sbjct: 4 MANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSAENLKFI-------------- 49
Query: 73 GEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
K DL + I + I + + NA
Sbjct: 50 ------KADLTKQQDITNVLDII--KNVSFDGIFLNA 78
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 48.8 bits (117), Expect = 3e-07
Identities = 18/99 (18%), Positives = 40/99 (40%), Gaps = 17/99 (17%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
+ ++TG +G+G T + L GA+V++ D+ + E +++
Sbjct: 6 EIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVL--DI-RGEDVVADL------------ 50
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
D+ ++ A D+ +T + I++N A
Sbjct: 51 -GDRARFAAADVTDEAAVAS-ALDLAETMGTLRIVVNCA 87
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 48.3 bits (116), Expect = 4e-07
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 11/110 (10%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRD-VEKAETTASEIRKHFEVATSED 69
+L GK V+ITG ++GIG+ + GA + +A D A T +
Sbjct: 44 KLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVE---------- 93
Query: 70 KKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNAVYCILSNNIL 119
K+ + ++ DL+ + +D Q+ + +++IL+NN +
Sbjct: 94 KEGVKCVLLPGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLE 143
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 48.2 bits (115), Expect = 8e-07
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 28/114 (24%)
Query: 8 SASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVI---------MACRDVEKAETTASEI 58
S K VIITG G+GK + +GAKV+ + + A+ EI
Sbjct: 2 SPVDFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEI 61
Query: 59 RKHFEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEAN---VHILINNA 109
K+ VA +A + ++ D + + N VH++INNA
Sbjct: 62 VKNGGVA----------------VADYNNVLDGDKIVETAVKNFGTVHVIINNA 99
Score = 40.5 bits (95), Expect = 2e-04
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 22/103 (21%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDK 70
L K V+ITG G+GK A+ GAKV++ D + A T EI+
Sbjct: 319 SLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVN--DFKDATKTVDEIK----------A 366
Query: 71 KPGEVLIKKLDLASFKSIRDCAQDINQTEAN----VHILINNA 109
GE + ++ I + + + IL+NNA
Sbjct: 367 AGGEA------WPDQHDVAKDSEAIIKNVIDKYGTIDILVNNA 403
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 47.0 bits (112), Expect = 1e-06
Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 28/111 (25%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVI---------MACRDVEKAETTASEIRKH 61
R DG+ V++TG G+G+ A GA V+ + A+ EIR+
Sbjct: 6 RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRR 65
Query: 62 FEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEAN---VHILINNA 109
A +A++ S+ + + + +++NNA
Sbjct: 66 GGKA----------------VANYDSVEAGEKLVKTALDTFGRIDVVVNNA 100
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 46.5 bits (111), Expect = 2e-06
Identities = 12/103 (11%), Positives = 30/103 (29%), Gaps = 22/103 (21%)
Query: 9 ASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSE 68
A+ + + V++ G +G Q V DV + E ++ + + +E
Sbjct: 2 AASGEARRVLVYGGRGALGSRCVQAFRARNWWVASI--DVVENEEASASVIVKMTDSFTE 59
Query: 69 DKKPGEVLIKKLDLASFKSIRDCAQDINQTEAN--VHILINNA 109
++ + + V ++ A
Sbjct: 60 Q------------------ADQVTAEVGKLLGDQKVDAILCVA 84
Score = 26.5 bits (59), Expect = 7.5
Identities = 6/29 (20%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 126 YAIPGKNVNVYAVHPGIVKTELGR-YMDD 153
+ AV P + T + R M +
Sbjct: 165 NSGMPSGAAAIAVLPVTLDTPMNRKSMPE 193
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 46.4 bits (111), Expect = 2e-06
Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 26/115 (22%)
Query: 11 RLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMA--CRDV--------------EKAETT 54
R++GK +TG G G+ A L GA +I C+ + E T
Sbjct: 8 RVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAET 67
Query: 55 ASEIRKHFEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
A ++ H ++ ++D+ + +++ + + I++ NA
Sbjct: 68 ADLVKGH----------NRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANA 112
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 46.0 bits (110), Expect = 2e-06
Identities = 12/99 (12%), Positives = 27/99 (27%), Gaps = 24/99 (24%)
Query: 15 KTVIITGCNTGIGKVTAQTLYGIGAKVIMA-CRDVEKAETTASEIRKHFEVATSEDKKPG 73
++T G + L G V+ + AE E +A +E
Sbjct: 2 VIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESENPGTIALAEQ---- 57
Query: 74 EVLIKKLDLASFKSIRDCAQDINQTEAN---VHILINNA 109
+ ++ T + + +++N
Sbjct: 58 ----------------KPERLVDATLQHGEAIDTIVSND 80
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 46.2 bits (110), Expect = 2e-06
Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 20/110 (18%)
Query: 10 SRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVI----------MACRDVEKAETTASEIR 59
+DG+ VI+TG GIG+ A GA+V+ A++ EI
Sbjct: 23 GVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEIT 82
Query: 60 KHFEVATSEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
GE + ++A + Q +T + +L+NNA
Sbjct: 83 ----------AAGGEAVADGSNVADWDQAAGLIQTAVETFGGLDVLVNNA 122
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 45.0 bits (107), Expect = 6e-06
Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 26/95 (27%)
Query: 15 KTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKKPGE 74
++I+GC TGIG T + L G +++ D+ AE A +++T+E +K
Sbjct: 2 SIIVISGCATGIGAATRKVLEAAGHQIVGI--DIRDAEVIA-------DLSTAEGRK--- 49
Query: 75 VLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+ A + + + L+ A
Sbjct: 50 --------------QAIADVLAKCSKGMDGLVLCA 70
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 44.9 bits (107), Expect = 6e-06
Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 12/113 (10%)
Query: 9 ASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEK--AETTASEIRKHFEVAT 66
+ RL + ++TG ++GIG+ A GA V + E+ A+ + I
Sbjct: 44 SGRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIE------- 96
Query: 67 SEDKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNAVYCILSNNIL 119
+ + ++ DL+ R + + IL A I
Sbjct: 97 ---ECGRKAVLLPGDLSDESFARSLVHKAREALGGLDILALVAGKQTAIPEIK 146
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 41.9 bits (99), Expect = 6e-05
Identities = 10/103 (9%), Positives = 22/103 (21%), Gaps = 28/103 (27%)
Query: 12 LDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKK 71
+ VI+ G +G + G V+ +
Sbjct: 1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN------------------DQAD 42
Query: 72 PGEVLIKKLDLASFKSIRDCAQDINQTEA-----NVHILINNA 109
++ + + QT + V + A
Sbjct: 43 SNILVDGNKNWTEQ-----EQSILEQTASSLQGSQVDGVFCVA 80
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 40.3 bits (95), Expect = 2e-04
Identities = 13/44 (29%), Positives = 16/44 (36%)
Query: 15 KTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEI 58
+ ITG +GIG + L G VI R E S
Sbjct: 2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTP 45
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma
volcanium}
Length = 144
Score = 37.5 bits (88), Expect = 0.001
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 3 ASKAVS-ASRLDGKTVIITGCNTG-IGKVTAQTLYGIGAKVIMACRDVEKAETTASEI 58
S + G +++ G G + A KV +A R+++ A +
Sbjct: 9 PSIVYDIVRKNGGNKILLVG--NGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKY 64
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 37.6 bits (88), Expect = 0.001
Identities = 12/97 (12%), Positives = 32/97 (32%), Gaps = 32/97 (32%)
Query: 13 DGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKKP 72
+ +++ G + +G + L A+VI A R + ++
Sbjct: 2 NAMKILLIGASGTLGSAVKERLEK-KAEVITAGR-------HSGDVT------------- 40
Query: 73 GEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
+D+ + SI+ + + V +++
Sbjct: 41 -------VDITNIDSIKKMYEQV----GKVDAIVSAT 66
Score = 27.2 bits (61), Expect = 3.1
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 6/39 (15%)
Query: 129 PGKNVNVYAVHPGIVKTELGRYMDDTYFPGAR--TLGRV 165
G +N V P +++ + +F G +V
Sbjct: 148 RGIRIN--TVSPNVLEESWDKLEP--FFEGFLPVPAAKV 182
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 38.0 bits (89), Expect = 0.001
Identities = 13/95 (13%), Positives = 35/95 (36%), Gaps = 23/95 (24%)
Query: 15 KTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKKPGE 74
++ ++TG +G+G+ A L G +V++ E +
Sbjct: 3 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG----------------------ED 40
Query: 75 VLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
++ + D+ + +R + A + +++ A
Sbjct: 41 LIYVEGDVTREEDVRRAVARAQEE-APLFAVVSAA 74
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 38.0 bits (88), Expect = 0.001
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 14 GKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAE 52
++ T + +G++ Q G K++ R E+A+
Sbjct: 172 HSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQAD 210
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.004
Identities = 23/196 (11%), Positives = 60/196 (30%), Gaps = 38/196 (19%)
Query: 35 YGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKKPGEVLIKKLDL-ASFKSIRDCAQ 93
+ + K+++ R + + ++ H + + + L + R Q
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISL---DHHSMTLTPDEVKSLLLKYLDCR--PQ 316
Query: 94 DINQTEANVHILINNAVYCILSNNILFYSILFYAIPGKNVNVYAVH-----------PGI 142
D+ + + + + + + + + + K+VN + P
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWD--NW----KHVNCDKLTTIIESSLNVLEPAE 370
Query: 143 VK---TELGRYMDDTYFPGARTLGRVLMWWWMKT--PEQGAQTTLH--CALDEGAAKET- 194
+ L + + P L L+W+ + LH +++ + T
Sbjct: 371 YRKMFDRLSVFPPSAHIP-TILL--SLIWFDVIKSDVMVVVN-KLHKYSLVEKQPKESTI 426
Query: 195 GLY--YSDYKVAKSRN 208
+ Y + K K N
Sbjct: 427 SIPSIYLELK-VKLEN 441
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 36.5 bits (85), Expect = 0.004
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 14 GKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKH 61
G +VI N+G+G+ Q +G + I RD + + ++
Sbjct: 168 GDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSL 215
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.006
Identities = 27/122 (22%), Positives = 41/122 (33%), Gaps = 27/122 (22%)
Query: 63 EVATSEDKKPGEVLIKKLDLASFKS-----------IRDCAQDINQTEANVHILINNAVY 111
V S+ + +VL L L F++ Q+ + T LI N Y
Sbjct: 71 LVEPSKVGQFDQVL--NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN--Y 126
Query: 112 ---CILSN---NILFYSILFYAIPGKNVNVYAVHPG--IVKT---ELGRYMDDTYFPGAR 160
I++ + S LF A+ N + A+ G EL R + TY
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL-RDLYQTYHVLVG 185
Query: 161 TL 162
L
Sbjct: 186 DL 187
Score = 35.0 bits (80), Expect = 0.017
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 21 GCNTGIGKVTAQTLYGIGAKVIMA 44
G +G+G +T + G G +VI+A
Sbjct: 507 GGASGLGVLTHRNKDGTGVRVIVA 530
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 34.5 bits (80), Expect = 0.020
Identities = 7/39 (17%), Positives = 15/39 (38%)
Query: 14 GKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAE 52
K ++T + + K+ G + I+ R E+
Sbjct: 165 EKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIA 203
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 34.1 bits (79), Expect = 0.024
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 14 GKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAE 52
+++ C + IG + AQ + ++I R+ + E
Sbjct: 145 NDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTE 183
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 34.2 bits (78), Expect = 0.024
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 12 LDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAE 52
+ G V + G +G A+ +GAKV + R+ +
Sbjct: 153 IHGANVAVLGLG-RVGMSVARKFAALGAKVKVGARESDLLA 192
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 34.5 bits (79), Expect = 0.029
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 11 RLDGKTVIITGCNTG-IG-KVTAQTLYGIGAKVIMAC 45
K V+ITG G IG +V L G GAKV++
Sbjct: 473 TFKDKYVLITGAGKGSIGAEVLQGLLQG-GAKVVVTT 508
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima
dehydrogenase; shikimate, NADPH, dehydroshikimate,
bifunctional enzyme; HET: DHK TLA NAP; 1.78A
{Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Length = 523
Score = 32.8 bits (75), Expect = 0.071
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 2 SASKAVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIR-K 60
+S S+S L KTV++ G G GK A GAKV++A R E+A A I K
Sbjct: 352 PSSVPSSSSPLASKTVVVIGAG-GAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGK 410
Query: 61 HFEVATSEDKKPGEVLI 77
+ ++ P + ++
Sbjct: 411 ALSLTDLDNYHPEDGMV 427
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 32.6 bits (75), Expect = 0.083
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 6 AVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMA 44
V A + GK+V+ITG +G + GA ++
Sbjct: 160 TVLAGPISGKSVLITGAGP-LGLLGIAVAKASGAYPVIV 197
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 32.1 bits (72), Expect = 0.098
Identities = 23/184 (12%), Positives = 54/184 (29%), Gaps = 27/184 (14%)
Query: 16 TVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKKPGEV 75
V + G +GK A L +G ++++ R EKAE A+E R+ A+ K +
Sbjct: 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDA 61
Query: 76 LIKK---LDLASFKSIRDCAQDINQTEANVHILINNAVYCILSNNILFYSILFYAIPGKN 132
+ ++ D A+D+ ++ +
Sbjct: 62 AEACDIAVLTIPWEHAIDTARDLKNILREKIVVSPLVPV------------------SRG 103
Query: 133 VNVYAVHPGIVKTELGRYMDDTYFPGARTLGR--VLMWWWMKTPEQGAQTTLHCALDEGA 190
+ E+ + + + + ++ + D+
Sbjct: 104 AKGFTYSSERSAAEIVAEV----LESEKVVSALHTIPAARFANLDEKFDWDVPVCGDDDE 159
Query: 191 AKET 194
+K+
Sbjct: 160 SKKV 163
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND
biology, protein structure initiative, midwest center
for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter
pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A*
3qy0_A* 2qmo_A
Length = 242
Score = 31.7 bits (72), Expect = 0.12
Identities = 11/44 (25%), Positives = 13/44 (29%), Gaps = 5/44 (11%)
Query: 4 SKAVSASRLDGKTVIITGCNTGIGK--VTA---QTLYGIGAKVI 42
S G + I+ NT GK Q G K I
Sbjct: 11 SSGRENLYFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTI 54
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase;
oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}
Length = 421
Score = 32.1 bits (74), Expect = 0.12
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 12 LDGKTVIITGC-NTGIGKVTAQTLYGIGAKVIMACRDVEKAETT 54
++ + + G N G T + + G KV A + ++ E
Sbjct: 210 MEDAKIAVQGFGNVGT--FTVKNIERQGGKVC-AIAEWDRNEGN 250
>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding,
fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}
Length = 422
Score = 32.0 bits (72), Expect = 0.13
Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 4/109 (3%)
Query: 5 KAVSASRLDGKTVIITGCNTGIGKVTAQTL-YGIGAKVIMACRDVEKAETTASEIRKHFE 63
+A K V++ G ++G G + T +G GA + + + A +
Sbjct: 52 RARGVRNDGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNS 111
Query: 64 VATSE--DKKPGEVLIKKLDLASFKSIRDCAQDINQTE-ANVHILINNA 109
A + D S + + I V +++ +
Sbjct: 112 AAFDKHAKAAGLYSKSINGDAFSDAARAQVIELIKTEMGGQVDLVVYSL 160
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 31.4 bits (72), Expect = 0.17
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 12 LDGKTVIITGCNTG-IGKVTAQTLYGIGAKVI 42
+ + V + G TG IG+V Q + G GAKVI
Sbjct: 144 VRDQVVGVVG--TGHIGQVFMQIMEGFGAKVI 173
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 31.4 bits (72), Expect = 0.18
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 12 LDGKTVIITGCNTG-IGKVTAQTLYGIGAKVI 42
L +TV + G TG IG+V + G GAKVI
Sbjct: 143 LGQQTVGVMG--TGHIGQVAIKLFKGFGAKVI 172
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 31.4 bits (72), Expect = 0.19
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 12 LDGKTVIITGCNTG-IGKVTAQTLYGIGAKVI 42
+ TV + G G IG+V AQ +G+GA VI
Sbjct: 144 VRNCTVGVVG--LGRIGRVAAQIFHGMGATVI 173
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 31.5 bits (72), Expect = 0.21
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 10 SRLDGKTVIITGCNTG-IGKVTAQTLYGIGAKVIMACRDVEKAE 52
S L G+ ++I G TG IG+ A +G VI A+
Sbjct: 133 STLTGQQLLIYG--TGQIGQSLAAKASALGMHVIGVNTTGHPAD 174
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A
{Thermus thermophilus HB27} PDB: 3aoe_A
Length = 440
Score = 31.0 bits (71), Expect = 0.25
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 12 LDGKTVIITGC-NTGIGKVTAQTLYGIGAKVIMACRDV 48
++G V I G N G A+ + GA+V+ A +D
Sbjct: 233 VEGARVAIQGFGNVGN--AAARAFHDHGARVV-AVQDH 267
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET:
NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7
c.58.1.1
Length = 421
Score = 30.9 bits (71), Expect = 0.26
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 12 LDGKTVIITGC-NTGIGKVTAQTLYGIGAKVIMACRDV 48
++GKTV I G N G TA L +GAKVI A D+
Sbjct: 208 IEGKTVAIQGMGNVGR--WTAYWLEKMGAKVI-AVSDI 242
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 31.1 bits (71), Expect = 0.28
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 12 LDGKTVIITGCNTG-IGKVTAQTLYGIGAKVI 42
L+ T+ + G TG IG A G KV+
Sbjct: 139 LNRLTLGVIG--TGRIGSRVAMYGLAFGMKVL 168
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG,
oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Length = 424
Score = 30.9 bits (71), Expect = 0.31
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 12 LDGKTVIITGC-NTGIGKVTAQTLYGIGAKVIMACRDV 48
L +II G N G A+ ++ GAKVI D
Sbjct: 219 LQNARIIIQGFGNAGS--FLAKFMHDAGAKVI-GISDA 253
>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty
acid biosynthesis II, short-chain dehydrogenase
reductase superfamily; HET: NAI; 1.80A {Yersinia pestis}
PDB: 3zu4_A* 3zu5_A* 3zu2_A*
Length = 405
Score = 30.8 bits (69), Expect = 0.31
Identities = 19/108 (17%), Positives = 32/108 (29%), Gaps = 3/108 (2%)
Query: 5 KAVSASRLDGKTVIITGCNTGIGKVTAQTL-YGIGAKVIMACRDVEKAETTASEIRKHFE 63
K V++ G +TG G T +G GA + + E +
Sbjct: 38 TTEGPIANGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNS 97
Query: 64 VATSE--DKKPGEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNA 109
A + +K D S + + I Q V +I +
Sbjct: 98 AAFHKFAAQKGLYAKSINGDAFSDEIKQLTIDAIKQDLGQVDQVIYSL 145
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 30.7 bits (70), Expect = 0.31
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 14 GKTVIITGCNTGIGKVTAQTLYGIGAKVIMA 44
G TV++ G IG V+ GA V+
Sbjct: 169 GTTVLVIGAGP-IGLVSVLAAKAYGAFVVCT 198
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A
{Thermus thermophilus}
Length = 419
Score = 30.5 bits (70), Expect = 0.34
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 12 LDGKTVIITGC-NTGIGKVTAQTLYGIGAKVIMACRDV 48
L G V++ G G A +G +V+ A
Sbjct: 216 LRGARVVVQGLGQVGA--AVALHAERLGMRVV-AVATS 250
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 30.5 bits (69), Expect = 0.35
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 12 LDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEK 50
+ G V + G G A+T +GA V + R
Sbjct: 155 IHGSQVAVLGLGR-TGMTIARTFAALGANVKVGARSSAH 192
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB:
1e5l_A* 1e5q_A
Length = 450
Score = 30.7 bits (68), Expect = 0.36
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 15 KTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRK 60
K+V++ G + + T L G KV +ACR +E A+ ++ ++
Sbjct: 4 KSVLMLGSG-FVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQH 48
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 30.4 bits (69), Expect = 0.40
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 11 RLDGKTVIITGCNTG-IGKVTAQTLYGIGAKVI 42
L G+T++I G TG IG+ A T G KV+
Sbjct: 137 GLKGRTLLILG--TGSIGQHIAHTGKHFGMKVL 167
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA;
2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1
e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Length = 354
Score = 29.8 bits (68), Expect = 0.56
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 25 GIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHF 62
GIG V A+ L +G I RD+ +E+ K
Sbjct: 186 GIGSVLARRLNELG---IQKLRDI--LSKNYNELEKIT 218
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design,
oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex
aeolicus} PDB: 2hk8_A 2hk7_A
Length = 275
Score = 29.8 bits (68), Expect = 0.66
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Query: 12 LDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKK 71
+ K++++ G G + L GAKV + R EKA ++ + F +
Sbjct: 127 VKEKSILVLGAG-GASRAVIYALVKEGAKVFLWNRTKEKAI----KLAQKFPLEVVNS-- 179
Query: 72 PGEVLIKKLDL 82
E +I K+ +
Sbjct: 180 -PEEVIDKVQV 189
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family,
transferase-D complex; HET: DNA MSE ADI; 1.70A
{Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB:
1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A*
1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A*
2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Length = 352
Score = 29.8 bits (68), Expect = 0.71
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 5/38 (13%)
Query: 25 GIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHF 62
GIG +TA+ L +G I D +++
Sbjct: 185 GIGNITAEKLKKLG---INKLVDT--LSIEFDKLKGMI 217
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND
ligase, magnesium, nucleotide-binding; 1.85A
{Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A*
3fpa_A*
Length = 251
Score = 29.3 bits (66), Expect = 0.74
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Query: 15 KTVIITGCNTGIGK--VTA---QTLYGIGAKVI 42
+++TG TG+GK V A G V
Sbjct: 27 TILVVTGTGTGVGKTVVCAALASAARQAGIDVA 59
>3of5_A Dethiobiotin synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, ligase;
1.52A {Francisella tularensis subsp}
Length = 228
Score = 29.3 bits (66), Expect = 0.93
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 15 KTVIITGCNTGIGK--VTA---QTLYGIGAKVI 42
K I G +T +GK ++ + K +
Sbjct: 5 KKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSL 37
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 29.6 bits (66), Expect = 1.1
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 6 AVSASRLDGKTVIITGCNTG-IGKVTAQTLYGIGAKVIMACRDVEKAET 53
A + K V+ITG G IG Q L GAKV++ K T
Sbjct: 667 AFNGVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVT 715
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex,
Y-family DNA polym translesion synthesis, nucleoside
triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens}
PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A*
2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A*
3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 3h4d_A* 3h4b_A*
...
Length = 420
Score = 29.3 bits (66), Expect = 1.2
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 25 GIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHF 62
GIG TA+ L +G I + RD+ + + K
Sbjct: 241 GIGYKTAKCLEALG---INSVRDL--QTFSPKILEKEL 273
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase;
0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A*
1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A*
1dak_A* 1dam_A* 1dbs_A 1dts_A
Length = 224
Score = 28.5 bits (64), Expect = 1.2
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 15 KTVIITGCNTGIGK--VTA---QTLYGIGAKVI 42
K +TG +T +GK + Q G +
Sbjct: 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTA 34
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 29.1 bits (66), Expect = 1.2
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 14 GKTVIITGCNTGIGKVTAQTLYGIGAKVIMA 44
K VII G T IG + Q +GAK + A
Sbjct: 161 NKNVIIIGAGT-IGLLAIQCAVALGAKSVTA 190
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 29.1 bits (65), Expect = 1.2
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 6 AVSASRLDGKTVIITGCNTG-IGKVTAQTLYGIGAKVIMACRDVEKAET 53
A S GK ++TG G IG Q L GAKVI+ + T
Sbjct: 644 ARSGLTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVT 692
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Length = 363
Score = 28.7 bits (65), Expect = 1.5
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 14 GKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKA 51
G V+I G IG +T GA ++ D+++
Sbjct: 180 GDPVLICGAGP-IGLITMLCAKAAGACPLVIT-DIDEG 215
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast;
3.10A {Plasmodium falciparum}
Length = 456
Score = 28.7 bits (65), Expect = 1.5
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 7/34 (20%)
Query: 12 LDGKTVIITGCNTGIGKV---TAQTLYGIGAKVI 42
L+ K +++G G V + L GA V+
Sbjct: 237 LENKKCLVSGS----GNVAQYLVEKLIEKGAIVL 266
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 28.4 bits (64), Expect = 1.7
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 11 RLDGKTVIITGCNTG-IGKVTAQTLYGIGAKVIMACR 46
+ +V I G G +G A++L G + R
Sbjct: 136 TREEFSVGIMG--AGVLGAKVAESLQAWGFPLRCWSR 170
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 28.4 bits (64), Expect = 1.8
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 16 TVIITGCNTGIGKVTAQTLY--GIGAKVIMACRDVEKAETTAS---EIRK 60
++ +TG +G + Q L +++I R+VEKA T A E+R
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRH 51
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family
DNA polymerase, translesion DNA synthesis, lesion
bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7
PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Length = 459
Score = 28.8 bits (64), Expect = 1.8
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 25 GIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHF 62
GIGKVT + L +G I+ C ++ + + + F
Sbjct: 289 GIGKVTEKMLKALG---IITCTELYQQR---ALLSLLF 320
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 28.6 bits (64), Expect = 1.8
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 14 GKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAE 52
G V+I G + G+G Q + G + +K
Sbjct: 221 GDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEA 259
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 28.3 bits (64), Expect = 2.0
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 14 GKTVIITGCNTGIGKVTAQTLYGIGAKVIMA 44
G TV I G IG +T Q GA ++
Sbjct: 183 GSTVAILGGGV-IGLLTVQLARLAGATTVIL 212
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A
{Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB:
1hrd_A 1k89_A 1aup_A 2yfh_A
Length = 449
Score = 28.3 bits (64), Expect = 2.0
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 12 LDGKTVIITGC-NTGIGKVTAQTLYGIGAKVIMACRD 47
L GKTV + G N G A+ L +GAK +
Sbjct: 228 LVGKTVALAGFGNVAWG--AAKKLAELGAKAV-TLSG 261
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 2.0
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 14/36 (38%)
Query: 69 DKKPGEVLIKKLDLASFKSIRDCAQD------INQT 98
+K+ +KKL AS K A D I T
Sbjct: 18 EKQA----LKKLQ-ASLKLY---ADDSAPALAIKAT 45
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding
protein, guanosine, TP0319, transport protein; HET: GMP;
1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Length = 318
Score = 28.1 bits (63), Expect = 2.4
Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 17/89 (19%)
Query: 23 NTGIGKVTAQTLYGIGAKVIMACRD------VEKAETTASEIRKHF--------EVATSE 68
+ G+ A LY G VI +++A + + +
Sbjct: 173 DPQKGQALAAKLYDSGVNVIFQVAGGTGNGVIKEARDRRLNGQDVWVIGVDRDQYMDGVY 232
Query: 69 DKKPGEVL---IKKLDLASFKSIRDCAQD 94
D VL +K+ D+A+ + +
Sbjct: 233 DGSKSVVLTSMVKRADVAAERISKMAYDG 261
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA
repair, DNA synthesis, binding, magnesium,
metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Length = 504
Score = 27.9 bits (62), Expect = 2.8
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 25 GIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHF 62
G+G L +G I C D+ T ++++K F
Sbjct: 322 GVGHSMESKLASLG---IKTCGDL--QYMTMAKLQKEF 354
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 27.8 bits (62), Expect = 2.8
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 14 GKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAE 52
G V+I G + G+G Q GA I +KAE
Sbjct: 229 GDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAE 267
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 27.8 bits (62), Expect = 3.1
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 15 KTVIITGCNTG-IGKVTAQTLYGIGAKVIMACRDVEKAE 52
++I GC G +G A+ L G +V R +
Sbjct: 4 SKILIAGC--GDLGLELARRLTAQGHEVTGLRRSAQPMP 40
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP:
b.35.1.2 c.2.1.1
Length = 327
Score = 27.6 bits (62), Expect = 3.3
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 14 GKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAE 52
+ + G+G + Q +GAK+I +KA+
Sbjct: 141 DEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQ 179
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding
nucleotide binding M binding, nucleus; HET: DNA TTD DTP;
3.34A {Homo sapiens}
Length = 517
Score = 27.7 bits (61), Expect = 3.4
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 25 GIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHF 62
GIGKVT + L +G I+ C ++ + + + F
Sbjct: 345 GIGKVTEKMLKALG---IITCTELYQQR---ALLSLLF 376
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 27.8 bits (62), Expect = 3.4
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 14 GKTVIITGCNTGIGKVTAQTLYGIGAKVIMA 44
+ V++ G IG + G +V MA
Sbjct: 181 CRKVLVVGTGP-IGVLFTLLFRTYGLEVWMA 210
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase;
HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB:
2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Length = 357
Score = 27.7 bits (62), Expect = 3.6
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 3 ASKAVSASRLDGKTVIITGCNTGIGKVTAQTL--YGIGAKVIMACRDVEKAE 52
A + SA D + + G + +G +T L G + + ++ +
Sbjct: 162 AYASRSAFDWDPSSAFVLGNGS-LGLLTLAMLKVDDKGYENLYCLGRRDRPD 212
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis,
oligomer organization, oxidoreductase; 2.7A {Plasmodium
falciparum}
Length = 470
Score = 27.6 bits (62), Expect = 3.8
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 12 LDGKTVIITGC-NTGIGKVTAQTLYGIGAKVIMACRD 47
++ +T +++G N + Q L + KV+ D
Sbjct: 250 VEKQTAVVSGSGNVALY--CVQKLLHLNVKVL-TLSD 283
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative,
RSGI, structural genomics, lyase; HET: PLP; 2.15A
{Thermus thermophilus} SCOP: c.79.1.1
Length = 311
Score = 27.5 bits (62), Expect = 4.0
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 6 AVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEI 58
A +A L K +++ + K YG A+V+ + E A +
Sbjct: 81 AYAAQVLGVKALVVMPEDASPYKKACARAYG--AEVVDRGVTAKNREEVARAL 131
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter
pomeroyi DSS, structural genomics, PSI-2, protein
structure initiative; HET: MSE; 1.66A {Ruegeria
pomeroyi dss-3}
Length = 286
Score = 27.2 bits (60), Expect = 4.0
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 15 KTVIITGCNTG-IGKVTAQTLYGIGAKVIMACRDVEKAE 52
T++ G G +V ++ L G ++I R+ ++ E
Sbjct: 6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQME 42
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A
{Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
1pl6_A* 3qe3_A
Length = 356
Score = 27.2 bits (61), Expect = 4.5
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 14 GKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKA 51
G V++ G IG VT +GA ++ D+
Sbjct: 172 GHKVLVCGAGP-IGMVTLLVAKAMGAAQVVVT-DLSAT 207
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase,
structural genomics, NPPSFA; HET: MES; 2.50A {Thermus
thermophilus} PDB: 2ejv_A*
Length = 343
Score = 27.2 bits (61), Expect = 4.6
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 14 GKTVIITGCNTGIGKVTAQTLYGIGAKVIMA 44
GK+V+ITG IG + A + GA I+
Sbjct: 165 GKSVLITGAGP-IGLMAAMVVRASGAGPILV 194
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 27.1 bits (61), Expect = 5.0
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 14 GKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAE 52
G+ V++ +G Q +G +V+ A EK
Sbjct: 126 GEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLA 164
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase,
thiamin diphosphate, lyase; HET: PGE HE3; 2.00A
{Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 1ozg_A* 1ozf_A*
Length = 566
Score = 27.1 bits (61), Expect = 5.1
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 48 VEKAETTASEIRKHFEVATSEDKKPGEVLI 77
V + A + F A +PG +
Sbjct: 138 VTAPDALAEVVSNAFRAAEQG--RPGSAFV 165
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III;
dimer, PLP, isomerase; HET: PLP; 1.70A
{Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A*
2zpu_A* 2zr8_A*
Length = 323
Score = 26.7 bits (60), Expect = 5.7
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 6 AVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRK 60
A+SA L II + KV A YG +VIM R + E A EI +
Sbjct: 90 ALSAKILGIPAKIIMPLDAPEAKVAATKGYG--GQVIMYDRYKDDREKMAKEISE 142
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics,
seattle structural G center for infectious disease; HET:
ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Length = 464
Score = 26.9 bits (60), Expect = 5.9
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 14 GKTVIITGCNTGIGKVTAQTLYGIGAKVI 42
GK ++ G +GK +AQ+L G GA+V
Sbjct: 247 GKVAVVCGYGD-VGKGSAQSLAGAGARVK 274
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 27.0 bits (60), Expect = 5.9
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 14 GKTVII-TGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKH 61
GK I G + +GK +Q + I RD + + +++
Sbjct: 167 GKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKEL 215
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 26.8 bits (60), Expect = 6.1
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 14 GKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAE 52
G+TV++ G GIG Q G+GAKVI E
Sbjct: 160 GETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATE 198
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix,
fidelity, processivity, transferase; 2.30A {Sulfolobus
solfataricus} SCOP: e.8.1.7
Length = 221
Score = 26.7 bits (60), Expect = 6.3
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 25 GIGKVTAQTLYGIGAKVIMACRDVEKA 51
GIG V A+ L +G I RD+
Sbjct: 191 GIGSVLARRLNELG---IQKLRDILSK 214
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann
fold, NAD binding, oxidoreductase; HET: NAP; 1.74A
{Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Length = 371
Score = 26.6 bits (59), Expect = 6.5
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 12/54 (22%)
Query: 14 GKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATS 67
V++ G +T VT Q L G I T S +F++A S
Sbjct: 165 PVYVLVYGGSTATATVTMQMLRLSGYIPI----------ATCSP--HNFDLAKS 206
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A
{Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A
1euz_A
Length = 419
Score = 26.7 bits (60), Expect = 7.2
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 3 ASKAVSASRLDGKTVIITGC-NTGIGKVTAQTLY-GIGAKVIMACRDV 48
A+K + L GKT+ I G N G A+ + G KV+ A D
Sbjct: 201 AAKVLGWDTLKGKTIAIQGYGNAGY--YLAKIMSEDFGMKVV-AVSDS 245
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine
deaminase, PLP, threonine DEH L-threonine metabolism;
HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A*
2gn2_A*
Length = 342
Score = 26.4 bits (59), Expect = 8.0
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 6 AVSASRLDGKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRK 60
++S + L ++ KV A Y A+V++ + SEI +
Sbjct: 104 SLSCAMLGIDGKVVMPKGAPKSKVAATCDY--SAEVVLHGDNFNDTIAKVSEIVE 156
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate
decarboxylase, ULAD, niaid,CSG bound, biosynthetic
protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A*
Length = 218
Score = 26.1 bits (57), Expect = 8.4
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 14 GKTVIITGCNTGIGKVTAQTLYGIGAKVIMACRDVEKAE--TTASEIRKHFE 63
G + ITG GI GI K +A R + AE TA+ +R+ +
Sbjct: 166 GIELSITG---GIVPEDIYLFEGIKTKTFIAGRALAGAEGQQTAAALREQID 214
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 26.2 bits (57), Expect = 9.6
Identities = 29/186 (15%), Positives = 56/186 (30%), Gaps = 14/186 (7%)
Query: 14 GKTVIITGCNTG-IGKVTAQTLYGIGAKVIMACRDVEKAETTASEIRKHFEVATSEDKKP 72
G + + G TG +G+ A L +G +V + RD + A P
Sbjct: 19 GMKIAVLG--TGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAM--GAPPFSQWLP 74
Query: 73 GEVLIKKLDLASFKSIRDCAQDINQTEANVHILINNAVYCILSNNILFYSILFYAIPGKN 132
+ A + + + + +++ L A L+ IL
Sbjct: 75 EHPHVHLAAFADVAAGAELVVNATEGASSIAALT-AAGAENLAGKILVDIANPLDFSHGM 133
Query: 133 VNVYAVHPGIVKTELGRYMDDTYFPGARTLG--RVLMWWWMKTPEQ--GAQTTLHCALDE 188
E + FP A+ + + M P + G ++ + ++
Sbjct: 134 PPTLNPVNTDSLGEQIQ----RTFPEAKVVKTLNTMNASLMVDPGRAAGGDHSVFVSGND 189
Query: 189 GAAKET 194
AAK
Sbjct: 190 AAAKAE 195
>3txy_A Isochorismatase family protein family; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.70A {Burkholderia thailandensis}
Length = 199
Score = 25.7 bits (57), Expect = 10.0
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 15 KTVIITGCNTGIGKV--TAQTLYGIGAKVI-----MACRDVEKAETTASEIRKHF-EVAT 66
+++TG T IG V TA+ Y V+ ++ + ++I +VAT
Sbjct: 127 TDIVLTGIATNIG-VESTAREAYENNYNVVVVSDAVSTWSTDAQTFALTQIFPKLGQVAT 185
Query: 67 SED 69
+ D
Sbjct: 186 AAD 188
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.396
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,283,257
Number of extensions: 191167
Number of successful extensions: 1181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 967
Number of HSP's successfully gapped: 375
Length of query: 222
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 132
Effective length of database: 4,188,903
Effective search space: 552935196
Effective search space used: 552935196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.7 bits)