BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7937
(152 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q17BU3|KIF1A_AEDAE Kinesin-like protein unc-104 OS=Aedes aegypti GN=unc-104 PE=3 SV=1
Length = 1644
Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/90 (73%), Positives = 76/90 (84%), Gaps = 3/90 (3%)
Query: 17 TSHAHRLCVQRRQRRVLDTSSTYVRGEENLHGWRPRGDSLIFDHQWELEKLTRLQAVERV 76
S A VQRRQRRVLDTSSTYVRGEENLHGWRPRGDSLIFDHQWELEKLTRL+ V RV
Sbjct: 1321 ASEAGSPGVQRRQRRVLDTSSTYVRGEENLHGWRPRGDSLIFDHQWELEKLTRLEEVGRV 1380
Query: 77 RHMLLVKDKLGYDRT--PTTKSEKS-CHLS 103
RH+L+++++LG D T PTTK+EK C+L+
Sbjct: 1381 RHLLMLRERLGMDTTPNPTTKTEKDVCNLA 1410
>sp|Q7PHR1|KIF1A_ANOGA Kinesin-like protein unc-104 OS=Anopheles gambiae GN=unc-104 PE=3
SV=3
Length = 1644
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/90 (74%), Positives = 76/90 (84%), Gaps = 3/90 (3%)
Query: 17 TSHAHRLCVQRRQRRVLDTSSTYVRGEENLHGWRPRGDSLIFDHQWELEKLTRLQAVERV 76
S A VQRRQRRVLDTSSTYVRGEENLHGWRPRGDSLIFDHQWELEKLTRL+ V RV
Sbjct: 1319 ASEAGSPGVQRRQRRVLDTSSTYVRGEENLHGWRPRGDSLIFDHQWELEKLTRLEEVGRV 1378
Query: 77 RHMLLVKDKLGYDRT--PTTKSEKS-CHLS 103
RH+LL++++LG D T PTTK+EK C+L+
Sbjct: 1379 RHLLLLRERLGMDTTPNPTTKTEKDVCNLA 1408
>sp|Q28WQ1|KIF1A_DROPS Kinesin-like protein unc-104 OS=Drosophila pseudoobscura
pseudoobscura GN=unc-104 PE=3 SV=1
Length = 1671
Score = 112 bits (281), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/90 (72%), Positives = 75/90 (83%), Gaps = 3/90 (3%)
Query: 17 TSHAHRLCVQRRQRRVLDTSSTYVRGEENLHGWRPRGDSLIFDHQWELEKLTRLQAVERV 76
S A VQRRQRRVLDTSSTYVRGEENLHGWRPRGDSLIFDHQWELEKLTRL+ V R+
Sbjct: 1312 ASEAGSPGVQRRQRRVLDTSSTYVRGEENLHGWRPRGDSLIFDHQWELEKLTRLEEVGRM 1371
Query: 77 RHMLLVKDKLGYDR--TPTTKSEKS-CHLS 103
RH+LL++++LG D PTTK+EK C+L+
Sbjct: 1372 RHLLLLRERLGMDTNPNPTTKTEKDVCNLA 1401
>sp|A1ZAJ2|KIF1A_DROME Kinesin-like protein unc-104 OS=Drosophila melanogaster GN=unc-104
PE=1 SV=1
Length = 1670
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/90 (72%), Positives = 75/90 (83%), Gaps = 3/90 (3%)
Query: 17 TSHAHRLCVQRRQRRVLDTSSTYVRGEENLHGWRPRGDSLIFDHQWELEKLTRLQAVERV 76
S A VQRRQRRVLDTSSTYVRGEENLHGWRPRGDSLIFDHQWELEKLTRL+ V R+
Sbjct: 1312 ASEAGSPGVQRRQRRVLDTSSTYVRGEENLHGWRPRGDSLIFDHQWELEKLTRLEEVGRM 1371
Query: 77 RHMLLVKDKLGYDR--TPTTKSEKS-CHLS 103
RH+LL++++LG D PTTK+EK C+L+
Sbjct: 1372 RHLLLLRERLGMDTNPNPTTKTEKDVCNLA 1401
>sp|Q12756|KIF1A_HUMAN Kinesin-like protein KIF1A OS=Homo sapiens GN=KIF1A PE=1 SV=2
Length = 1690
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 57/72 (79%)
Query: 25 VQRRQRRVLDTSSTYVRGEENLHGWRPRGDSLIFDHQWELEKLTRLQAVERVRHMLLVKD 84
+QRR+RRVLDTS YVRGEENL GWRPR DSLI DHQWELEKL+ LQ VE+ RH LL+++
Sbjct: 1340 MQRRRRRVLDTSVAYVRGEENLAGWRPRSDSLILDHQWELEKLSLLQEVEKTRHYLLLRE 1399
Query: 85 KLGYDRTPTTKS 96
KL + P ++
Sbjct: 1400 KLETAQRPVPEA 1411
>sp|P33173|KIF1A_MOUSE Kinesin-like protein KIF1A OS=Mus musculus GN=Kif1a PE=1 SV=2
Length = 1695
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/68 (69%), Positives = 55/68 (80%)
Query: 25 VQRRQRRVLDTSSTYVRGEENLHGWRPRGDSLIFDHQWELEKLTRLQAVERVRHMLLVKD 84
+QRR+RRVLDTS YVRGEENL GWRPR DSLI DHQWELEKL+ LQ VE+ RH LL+++
Sbjct: 1345 MQRRRRRVLDTSVAYVRGEENLAGWRPRSDSLILDHQWELEKLSLLQEVEKTRHYLLLRE 1404
Query: 85 KLGYDRTP 92
KL + P
Sbjct: 1405 KLETTQRP 1412
>sp|P23678|UN104_CAEEL Kinesin-like protein unc-104 OS=Caenorhabditis elegans GN=unc-104
PE=2 SV=3
Length = 1584
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 61/88 (69%), Gaps = 6/88 (6%)
Query: 27 RRQRRVLDTSSTYVRGEENLHGWRPRGDSLIFDHQWELEKLTRLQAVERVRHMLLV---- 82
RRQRRVLDTSS YVRGEENL WRPRGDSLIF+HQWELEKLTRLQ VERVR L +
Sbjct: 1260 RRQRRVLDTSSAYVRGEENLGQWRPRGDSLIFEHQWELEKLTRLQQVERVRLFLRLRDRL 1319
Query: 83 --KDKLGYDRTPTTKSEKSCHLSDTCIL 108
K G RTP + + C + ++ L
Sbjct: 1320 KGKKNKGEARTPVSPCDPVCAIPESIKL 1347
>sp|Q60575|KIF1B_MOUSE Kinesin-like protein KIF1B OS=Mus musculus GN=Kif1b PE=1 SV=2
Length = 1816
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 55/68 (80%), Gaps = 1/68 (1%)
Query: 25 VQRRQRRVLDTSSTYVRGEENLHGWRPRGDSLIFDHQWELEKLTRLQAVERVRHMLLVKD 84
+QRR+R+VLDTS YVRGEENL GWRPRGDSLI +HQWELEKL L VE+ RH LL+++
Sbjct: 1457 MQRRRRKVLDTSVAYVRGEENLAGWRPRGDSLILEHQWELEKLELLHEVEKTRHFLLLRE 1516
Query: 85 KLGYDRTP 92
+LG D P
Sbjct: 1517 RLG-DSVP 1523
>sp|O88658|KIF1B_RAT Kinesin-like protein KIF1B OS=Rattus norvegicus GN=Kif1b PE=1 SV=2
Length = 1816
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 53/63 (84%)
Query: 25 VQRRQRRVLDTSSTYVRGEENLHGWRPRGDSLIFDHQWELEKLTRLQAVERVRHMLLVKD 84
+QRR+R+VLDTS YVRGEENL GWRPRGDSLI +HQWELEKL L VE+ RH LL+++
Sbjct: 1457 MQRRRRKVLDTSVAYVRGEENLAGWRPRGDSLILEHQWELEKLELLHEVEKTRHFLLLRE 1516
Query: 85 KLG 87
+LG
Sbjct: 1517 RLG 1519
>sp|O60333|KIF1B_HUMAN Kinesin-like protein KIF1B OS=Homo sapiens GN=KIF1B PE=1 SV=5
Length = 1816
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 53/63 (84%)
Query: 25 VQRRQRRVLDTSSTYVRGEENLHGWRPRGDSLIFDHQWELEKLTRLQAVERVRHMLLVKD 84
+QRR+R++LDTS YVRGEENL GWRPRGDSLI +HQWELEKL L VE+ RH LL+++
Sbjct: 1457 MQRRRRKILDTSVAYVRGEENLAGWRPRGDSLILEHQWELEKLELLHEVEKTRHFLLLRE 1516
Query: 85 KLG 87
+LG
Sbjct: 1517 RLG 1519
>sp|P35499|SCN4A_HUMAN Sodium channel protein type 4 subunit alpha OS=Homo sapiens GN=SCN4A
PE=1 SV=4
Length = 1836
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 17/129 (13%)
Query: 28 RQRRVL-------DTSSTYVRGEENLHGWRPRGDSLIFDHQW-ELEKLTRLQAVERVRHM 79
QRRV+ D TY+ E L W G + F + W L+ L + V +
Sbjct: 1056 EQRRVIRTILEYADKVFTYIFIMEMLLKWVAYGFKVYFTNAWCWLDFL-----IVDVSII 1110
Query: 80 LLVKDKLGYDRTPTTKSEKSCHLSDTCILISNIERVRIEINNIQGAIPA----LLITLYF 135
LV + LGY KS ++ +S E +R+ +N + GAIP+ LL+ L F
Sbjct: 1111 SLVANWLGYSELGPIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIF 1170
Query: 136 KLNSSMLIV 144
L S++ V
Sbjct: 1171 WLIFSIMGV 1179
>sp|P15390|SCN4A_RAT Sodium channel protein type 4 subunit alpha OS=Rattus norvegicus
GN=Scn4a PE=2 SV=1
Length = 1840
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 17/129 (13%)
Query: 28 RQRRVL-------DTSSTYVRGEENLHGWRPRGDSLIFDHQW-ELEKLTRLQAVERVRHM 79
QRRV+ D TY+ E L W G + F + W L+ L + V +
Sbjct: 1049 EQRRVIRTILEYADKVFTYIFILEMLLKWVAYGFKVYFTNAWCWLDFL-----IVDVSII 1103
Query: 80 LLVKDKLGYDRTPTTKSEKSCHLSDTCILISNIERVRIEINNIQGAIPA----LLITLYF 135
LV + LGY KS ++ +S E +R+ +N + GAIP+ LL+ L F
Sbjct: 1104 SLVANWLGYSELGPIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIF 1163
Query: 136 KLNSSMLIV 144
L S++ V
Sbjct: 1164 WLIFSIMGV 1172
>sp|Q9ER60|SCN4A_MOUSE Sodium channel protein type 4 subunit alpha OS=Mus musculus GN=Scn4a
PE=2 SV=1
Length = 1841
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 17/129 (13%)
Query: 28 RQRRVL-------DTSSTYVRGEENLHGWRPRGDSLIFDHQW-ELEKLTRLQAVERVRHM 79
QRRV+ D TY+ E L W G + F + W L+ L + V +
Sbjct: 1050 EQRRVIRTILEYADKVFTYIFILEMLLKWVAYGFKVYFTNAWCWLDFL-----IVDVSII 1104
Query: 80 LLVKDKLGYDRTPTTKSEKSCHLSDTCILISNIERVRIEINNIQGAIPA----LLITLYF 135
LV + LGY KS ++ +S E +R+ +N + GAIP+ LL+ L F
Sbjct: 1105 SLVANWLGYSELGPIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIF 1164
Query: 136 KLNSSMLIV 144
L S++ V
Sbjct: 1165 WLIFSIMGV 1173
>sp|Q28371|SCN4A_HORSE Sodium channel protein type 4 subunit alpha OS=Equus caballus
GN=SCN4A PE=1 SV=1
Length = 1834
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 17/129 (13%)
Query: 28 RQRRVL-------DTSSTYVRGEENLHGWRPRGDSLIFDHQW-ELEKLTRLQAVERVRHM 79
QRRV+ D TY+ E L W G + F + W L+ L + V +
Sbjct: 1053 EQRRVIRTILEYADKVFTYIFIMEMLLKWVAYGFKVYFTNAWCWLDFL-----IVDVSII 1107
Query: 80 LLVKDKLGYDRTPTTKSEKSCHLSDTCILISNIERVRIEINNIQGAIPA----LLITLYF 135
LV + LGY KS ++ +S E +R+ +N + GAIP+ LL+ L F
Sbjct: 1108 SLVANWLGYSELGPIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIF 1167
Query: 136 KLNSSMLIV 144
+ S++ V
Sbjct: 1168 WVIFSIMGV 1176
>sp|Q9UQD0|SCN8A_HUMAN Sodium channel protein type 8 subunit alpha OS=Homo sapiens GN=SCN8A
PE=1 SV=1
Length = 1980
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 14/128 (10%)
Query: 26 QRRQRRVL----DTSSTYVRGEENLHGWRPRGDSLIFDHQW-ELEKLTRLQAVERVRHML 80
QR+ R + D TY+ E L W G F + W L+ L + AV V
Sbjct: 1224 QRKTIRTILEYADKVFTYIFILEMLLKWTAYGFVKFFTNAWCWLDFL--IVAVSLVS--- 1278
Query: 81 LVKDKLGYDRTPTTKSEKSCHLSDTCILISNIERVRIEINNIQGAIPA----LLITLYFK 136
L+ + LGY KS ++ +S E +R+ +N + GAIP+ LL+ L F
Sbjct: 1279 LIANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFW 1338
Query: 137 LNSSMLIV 144
L S++ V
Sbjct: 1339 LIFSIMGV 1346
>sp|Q9WTU3|SCN8A_MOUSE Sodium channel protein type 8 subunit alpha OS=Mus musculus GN=Scn8a
PE=1 SV=1
Length = 1978
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 14/128 (10%)
Query: 26 QRRQRRVL----DTSSTYVRGEENLHGWRPRGDSLIFDHQW-ELEKLTRLQAVERVRHML 80
QR+ R + D TY+ E L W G F + W L+ L + AV V
Sbjct: 1222 QRKTIRTILEYADKVFTYIFILEMLLKWTAYGFVKFFTNAWCWLDFL--IVAVSLVS--- 1276
Query: 81 LVKDKLGYDRTPTTKSEKSCHLSDTCILISNIERVRIEINNIQGAIPA----LLITLYFK 136
L+ + LGY KS ++ +S E +R+ +N + GAIP+ LL+ L F
Sbjct: 1277 LIANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFW 1336
Query: 137 LNSSMLIV 144
L S++ V
Sbjct: 1337 LIFSIMGV 1344
>sp|O88420|SCN8A_RAT Sodium channel protein type 8 subunit alpha OS=Rattus norvegicus
GN=Scn8a PE=1 SV=1
Length = 1978
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 14/128 (10%)
Query: 26 QRRQRRVL----DTSSTYVRGEENLHGWRPRGDSLIFDHQW-ELEKLTRLQAVERVRHML 80
QR+ R + D TY+ E L W G F + W L+ L + AV V
Sbjct: 1222 QRKTIRTILEYADKVFTYIFILEMLLKWTAYGFVKFFTNAWCWLDFL--IVAVSLVS--- 1276
Query: 81 LVKDKLGYDRTPTTKSEKSCHLSDTCILISNIERVRIEINNIQGAIPA----LLITLYFK 136
L+ + LGY KS ++ +S E +R+ +N + GAIP+ LL+ L F
Sbjct: 1277 LIANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFW 1336
Query: 137 LNSSMLIV 144
L S++ V
Sbjct: 1337 LIFSIMGV 1344
>sp|Q82S73|RF3_NITEU Peptide chain release factor 3 OS=Nitrosomonas europaea (strain
ATCC 19718 / NBRC 14298) GN=prfC PE=3 SV=1
Length = 535
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 62 WELEKLTRLQAVERVRHMLLVKDKLGYDRTPTTKSEKSCHLSDTCI---LISNIERVRIE 118
W + R V +RH L+ + G DR ++ +L D I +N+E+ R E
Sbjct: 168 WPVGSGKRFHGVYDLRHKLMRVFRAGMDRVEQEETAIITNLEDPAISERFGANLEQARQE 227
Query: 119 INNIQGAIPALLITLYFKLNSSMLIVG 145
I I GA P T + + + G
Sbjct: 228 IELITGAAPEFDQTAFLAGQQTPVFFG 254
>sp|P08104|SCN3A_RAT Sodium channel protein type 3 subunit alpha OS=Rattus norvegicus
GN=Scn3a PE=1 SV=1
Length = 1951
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 10/114 (8%)
Query: 34 DTSSTYVRGEENLHGWRPRGDSLIFDHQW-ELEKLTRLQAVERVRHMLLVKDKLGYDRTP 92
D TY+ E L W G F + W L+ L + V + LV + LGY
Sbjct: 1195 DKVFTYIFILEMLLKWVAYGFQTYFTNAWCWLDFL-----IVDVSLVSLVANALGYSELG 1249
Query: 93 TTKSEKSCHLSDTCILISNIERVRIEINNIQGAIPA----LLITLYFKLNSSML 142
KS ++ +S E +R+ +N + GAIP+ LL+ L F L S++
Sbjct: 1250 AIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIM 1303
>sp|Q9NY46|SCN3A_HUMAN Sodium channel protein type 3 subunit alpha OS=Homo sapiens GN=SCN3A
PE=1 SV=2
Length = 2000
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 10/116 (8%)
Query: 34 DTSSTYVRGEENLHGWRPRGDSLIFDHQW-ELEKLTRLQAVERVRHMLLVKDKLGYDRTP 92
D TY+ E L W G F + W L+ L + V + LV + LGY
Sbjct: 1244 DKVFTYIFILEMLLKWVAYGFQTYFTNAWCWLDFL-----IVDVSLVSLVANALGYSELG 1298
Query: 93 TTKSEKSCHLSDTCILISNIERVRIEINNIQGAIPA----LLITLYFKLNSSMLIV 144
KS ++ +S E +R+ +N + GAIP+ LL+ L F L S++ V
Sbjct: 1299 AIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGV 1354
>sp|P04775|SCN2A_RAT Sodium channel protein type 2 subunit alpha OS=Rattus norvegicus
GN=Scn2a PE=1 SV=1
Length = 2005
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 10/116 (8%)
Query: 34 DTSSTYVRGEENLHGWRPRGDSLIFDHQW-ELEKLTRLQAVERVRHMLLVKDKLGYDRTP 92
D TY+ E L W G + F + W L+ L + V + L + LGY
Sbjct: 1246 DKVFTYIFILEMLLKWVAYGFQMYFTNAWCWLDFL-----IVDVSLVSLTANALGYSELG 1300
Query: 93 TTKSEKSCHLSDTCILISNIERVRIEINNIQGAIPA----LLITLYFKLNSSMLIV 144
KS ++ +S E +R+ +N + GAIP+ LL+ L F L S++ V
Sbjct: 1301 AIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGV 1356
>sp|Q9JJV9|SCN5A_MOUSE Sodium channel protein type 5 subunit alpha OS=Mus musculus GN=Scn5a
PE=1 SV=2
Length = 2019
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 14/128 (10%)
Query: 26 QRRQRRVL----DTSSTYVRGEENLHGWRPRGDSLIFDHQW-ELEKLTRLQAVERVRHML 80
+R+ +VL D TYV E L W G F + W L+ L + V +
Sbjct: 1233 ERKTIKVLLEYADKMFTYVFVLEMLLKWVAYGFKKYFTNAWCWLDFL-----IVDVSLVS 1287
Query: 81 LVKDKLGYDRTPTTKSEKSCHLSDTCILISNIERVRIEINNIQGAIPA----LLITLYFK 136
LV + LG+ KS ++ +S E +R+ +N + GAIP+ LL+ L F
Sbjct: 1288 LVANTLGFAEMGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFW 1347
Query: 137 LNSSMLIV 144
L S++ V
Sbjct: 1348 LIFSIMGV 1355
>sp|Q14524|SCN5A_HUMAN Sodium channel protein type 5 subunit alpha OS=Homo sapiens GN=SCN5A
PE=1 SV=2
Length = 2016
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 14/128 (10%)
Query: 26 QRRQRRVL----DTSSTYVRGEENLHGWRPRGDSLIFDHQW-ELEKLTRLQAVERVRHML 80
+R+ +VL D TYV E L W G F + W L+ L + V +
Sbjct: 1231 ERKTIKVLLEYADKMFTYVFVLEMLLKWVAYGFKKYFTNAWCWLDFL-----IVDVSLVS 1285
Query: 81 LVKDKLGYDRTPTTKSEKSCHLSDTCILISNIERVRIEINNIQGAIPA----LLITLYFK 136
LV + LG+ KS ++ +S E +R+ +N + GAIP+ LL+ L F
Sbjct: 1286 LVANTLGFAEMGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFW 1345
Query: 137 LNSSMLIV 144
L S++ V
Sbjct: 1346 LIFSIMGV 1353
>sp|P15389|SCN5A_RAT Sodium channel protein type 5 subunit alpha OS=Rattus norvegicus
GN=Scn5a PE=2 SV=1
Length = 2019
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 14/128 (10%)
Query: 26 QRRQRRVL----DTSSTYVRGEENLHGWRPRGDSLIFDHQW-ELEKLTRLQAVERVRHML 80
+R+ +VL D TYV E L W G F + W L+ L + V +
Sbjct: 1233 ERKTIKVLLEYADKMFTYVFVLEMLLKWVAYGFKKYFTNAWCWLDFL-----IVDVSLVS 1287
Query: 81 LVKDKLGYDRTPTTKSEKSCHLSDTCILISNIERVRIEINNIQGAIPA----LLITLYFK 136
LV + LG+ KS ++ +S E +R+ +N + GAIP+ LL+ L F
Sbjct: 1288 LVANTLGFAEMGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFW 1347
Query: 137 LNSSMLIV 144
L S++ V
Sbjct: 1348 LIFSIMGV 1355
>sp|Q28644|SCN9A_RABIT Sodium channel protein type 9 subunit alpha OS=Oryctolagus cuniculus
GN=SCN9A PE=2 SV=1
Length = 1984
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 10/114 (8%)
Query: 34 DTSSTYVRGEENLHGWRPRGDSLIFDHQW-ELEKLTRLQAVERVRHMLLVKDKLGYDRTP 92
D TY+ E L W G F + W L+ L + V + LV + LGY
Sbjct: 1227 DKIFTYIFILEMLLKWVAYGYKTYFTNAWCWLDFL-----IVDVSLVTLVANTLGYSDLG 1281
Query: 93 TTKSEKSCHLSDTCILISNIERVRIEINNIQGAIPA----LLITLYFKLNSSML 142
KS ++ +S E +R+ +N + GAIP+ LL+ L F L S++
Sbjct: 1282 PIKSLRTLRALRPLRALSRFEGMRVVVNALIGAIPSIMNVLLVCLIFWLIFSIM 1335
>sp|Q99250|SCN2A_HUMAN Sodium channel protein type 2 subunit alpha OS=Homo sapiens GN=SCN2A
PE=1 SV=3
Length = 2005
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 10/116 (8%)
Query: 34 DTSSTYVRGEENLHGWRPRGDSLIFDHQW-ELEKLTRLQAVERVRHMLLVKDKLGYDRTP 92
D TY+ E L W G + F + W L+ L + V + L + LGY
Sbjct: 1246 DKVFTYIFILEMLLKWVAYGFQVYFTNAWCWLDFL-----IVDVSLVSLTANALGYSELG 1300
Query: 93 TTKSEKSCHLSDTCILISNIERVRIEINNIQGAIPA----LLITLYFKLNSSMLIV 144
KS ++ +S E +R+ +N + GAIP+ LL+ L F L S++ V
Sbjct: 1301 AIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGV 1356
>sp|O08562|SCN9A_RAT Sodium channel protein type 9 subunit alpha OS=Rattus norvegicus
GN=Scn9a PE=1 SV=1
Length = 1984
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 10/116 (8%)
Query: 34 DTSSTYVRGEENLHGWRPRGDSLIFDHQW-ELEKLTRLQAVERVRHMLLVKDKLGYDRTP 92
D TY+ E L W G F + W L+ L + V + LV + LGY
Sbjct: 1228 DKIFTYIFILEMLLKWVAYGYKTYFTNAWCWLDFL-----IVDVSLVTLVANTLGYSDLG 1282
Query: 93 TTKSEKSCHLSDTCILISNIERVRIEINNIQGAIPA----LLITLYFKLNSSMLIV 144
KS ++ +S E +R+ +N + GAIP+ LL+ L F L S++ V
Sbjct: 1283 PIKSLRTLRALRPLRALSRFEGMRVVVNALIGAIPSIMNVLLVCLIFWLIFSIMGV 1338
>sp|Q62205|SCN9A_MOUSE Sodium channel protein type 9 subunit alpha OS=Mus musculus GN=Scn9a
PE=1 SV=2
Length = 1984
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 10/116 (8%)
Query: 34 DTSSTYVRGEENLHGWRPRGDSLIFDHQW-ELEKLTRLQAVERVRHMLLVKDKLGYDRTP 92
D TY+ E L W G F + W L+ L + V + LV + LGY
Sbjct: 1228 DKIFTYIFILEMLLKWVAYGYKTYFTNAWCWLDFL-----IVDVSLVTLVANTLGYSDLG 1282
Query: 93 TTKSEKSCHLSDTCILISNIERVRIEINNIQGAIPA----LLITLYFKLNSSMLIV 144
KS ++ +S E +R+ +N + GAIP+ LL+ L F L S++ V
Sbjct: 1283 PIKSLRTLRALRPLRALSRFEGMRVVVNALIGAIPSIMNVLLVCLIFWLIFSIMGV 1338
>sp|Q15858|SCN9A_HUMAN Sodium channel protein type 9 subunit alpha OS=Homo sapiens GN=SCN9A
PE=1 SV=3
Length = 1988
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 10/114 (8%)
Query: 34 DTSSTYVRGEENLHGWRPRGDSLIFDHQW-ELEKLTRLQAVERVRHMLLVKDKLGYDRTP 92
D TY+ E L W G F + W L+ L + V + LV + LGY
Sbjct: 1230 DKIFTYIFILEMLLKWIAYGYKTYFTNAWCWLDFL-----IVDVSLVTLVANTLGYSDLG 1284
Query: 93 TTKSEKSCHLSDTCILISNIERVRIEINNIQGAIPA----LLITLYFKLNSSML 142
KS ++ +S E +R+ +N + GAIP+ LL+ L F L S++
Sbjct: 1285 PIKSLRTLRALRPLRALSRFEGMRVVVNALIGAIPSIMNVLLVCLIFWLIFSIM 1338
>sp|P35498|SCN1A_HUMAN Sodium channel protein type 1 subunit alpha OS=Homo sapiens GN=SCN1A
PE=1 SV=2
Length = 2009
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 34 DTSSTYVRGEENLHGWRPRGDSLIFDHQW-ELEKLTRLQAVERVRHMLLVKDKLGYDRTP 92
D TY+ E L W G F + W L+ L + V + L + LGY
Sbjct: 1256 DKVFTYIFILEMLLKWVAYGYQTYFTNAWCWLDFL-----IVDVSLVSLTANALGYSELG 1310
Query: 93 TTKSEKSCHLSDTCILISNIERVRIEINNIQGAIPA----LLITLYFKLNSSMLIVG 145
KS ++ +S E +R+ +N + GAIP+ LL+ L F L S++ V
Sbjct: 1311 AIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVN 1367
>sp|P04774|SCN1A_RAT Sodium channel protein type 1 subunit alpha OS=Rattus norvegicus
GN=Scn1a PE=2 SV=1
Length = 2009
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 34 DTSSTYVRGEENLHGWRPRGDSLIFDHQW-ELEKLTRLQAVERVRHMLLVKDKLGYDRTP 92
D TY+ E L W G F + W L+ L + V + L + LGY
Sbjct: 1256 DKVFTYIFILEMLLKWVAYGYQTYFTNAWCWLDFL-----IVDVSLVSLTANALGYSELG 1310
Query: 93 TTKSEKSCHLSDTCILISNIERVRIEINNIQGAIPA----LLITLYFKLNSSMLIVG 145
KS ++ +S E +R+ +N + GAIP+ LL+ L F L S++ V
Sbjct: 1311 AIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVN 1367
>sp|Q2XVR3|SC4AA_DANRE Sodium channel protein type 4 subunit alpha A OS=Danio rerio
GN=scn4aa PE=2 SV=2
Length = 1829
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 34 DTSSTYVRGEENLHGWRPRGDSLIFDHQW-ELEKLTRLQAVERVRHMLLVKDKLGYDRTP 92
D TY+ E L W G F + W L+ L + V + L + +GY
Sbjct: 1035 DKVFTYIFIVEMLLKWVAYGFKTYFTNAWCWLDFL-----IVDVSLVSLTANLMGYSELG 1089
Query: 93 TTKSEKSCHLSDTCILISNIERVRIEINNIQGAIPA----LLITLYFKLNSSML 142
KS ++ +S E +R+ +N + GAIP+ LL+ L F L S++
Sbjct: 1090 AIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIFNVLLVCLIFWLIFSIM 1143
>sp|Q7TT41|MOXD2_MOUSE DBH-like monooxygenase protein 2 OS=Mus musculus GN=Moxd2 PE=2 SV=1
Length = 619
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 71 QAVERVRHMLLVKDKLGYDRTPTTKSEKSCHLSDTCILISNIERVRIEINNIQGAIPALL 130
+A E L+V D + + K+EK+C S +LI I+ E+ N G IP ++
Sbjct: 497 EASENPMENLMVLDNVEWTPENIKKAEKACKESQQTVLIKTIDE---EVENTTGWIPDII 553
Query: 131 IT 132
T
Sbjct: 554 PT 555
>sp|Q2XVR6|SC4AB_TAKRU Sodium channel protein type 4 subunit alpha B OS=Takifugu rubripes
GN=scn4ab PE=3 SV=1
Length = 1719
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 34 DTSSTYVRGEENLHGWRPRGDSLIFDHQW-ELEKLTRLQAVERVRHMLLVKDKLGYDRTP 92
D TYV E + W G F + W L+ L + V + L + LGY
Sbjct: 956 DKVFTYVFVMEMVLKWFAYGFKSYFSNAWCWLDFL-----IVDVSLVSLTANILGYSELG 1010
Query: 93 TTKSEKSCHLSDTCILISNIERVRIEINNIQGAIPA----LLITLYFKLNSSML 142
KS ++ +S E +R+ +N + GA+P+ LL+ L F L S++
Sbjct: 1011 AIKSLRTLRALRPLRALSRFEGMRVVVNALVGAVPSIFNVLLVCLIFWLIFSIM 1064
>sp|Q2XVR4|SC4AB_TETNG Sodium channel protein type 4 subunit alpha B OS=Tetraodon
nigroviridis GN=scn4ab PE=3 SV=1
Length = 1715
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 34 DTSSTYVRGEENLHGWRPRGDSLIFDHQW-ELEKLTRLQAVERVRHMLLVKDKLGYDRTP 92
D TYV E + W G F + W L+ L + V + L + LGY
Sbjct: 952 DKVFTYVFVVEMVLKWFAYGFKSYFSNAWCWLDFL-----IVDVSLVSLTANILGYSELG 1006
Query: 93 TTKSEKSCHLSDTCILISNIERVRIEINNIQGAIPA----LLITLYFKLNSSML 142
KS ++ +S E +R+ +N + GA+P+ LL+ L F L S++
Sbjct: 1007 AIKSLRTLRALRPLRALSRFEGMRVVVNALVGAVPSIFNVLLVCLIFWLIFSIM 1060
>sp|Q9Z0W5|PACN1_RAT Protein kinase C and casein kinase substrate in neurons protein 1
OS=Rattus norvegicus GN=Pacsin1 PE=1 SV=1
Length = 441
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 31/65 (47%)
Query: 66 KLTRLQAVERVRHMLLVKDKLGYDRTPTTKSEKSCHLSDTCILISNIERVRIEINNIQGA 125
K+ L+A ++ H+ ++KL R +K+E+S L+ +++ R ++ Q
Sbjct: 146 KMKELEAAKKAYHLACKEEKLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEK 205
Query: 126 IPALL 130
+L
Sbjct: 206 YEKVL 210
>sp|Q6DCZ7|FBP1L_XENLA Formin-binding protein 1-like OS=Xenopus laevis GN=fnbp1l PE=1 SV=1
Length = 543
Score = 30.0 bits (66), Expect = 5.5, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 16/97 (16%)
Query: 41 RGEENLHGWRPRGDSL-IFDH----------QWELEKLTRLQAVERVRHMLLVKDKLGYD 89
+G+ L G +P+G +L F H Q +++L+R E + L K K Y+
Sbjct: 319 KGKLWLFGKKPKGPALEDFSHLPPEQRRKRLQQRIDELSRELQKEMDQKDALNKMKDVYE 378
Query: 90 RTPTTKSEKSCH--LSDTCILISNIERVRIEINNIQG 124
+ P S H +++T SNIER+R+EI+ +G
Sbjct: 379 KNPQMGDPGSLHPKIAET---TSNIERLRMEIHKNEG 412
>sp|Q6M981|FKB1B_NEUCR Peptidyl-prolyl cis-trans isomerase fkr-3 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=fkr-3 PE=3 SV=1
Length = 110
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 23 LCVQRRQRRVLDTSSTYVRGEENLHGWRPRGDSLIFD 59
L ++ ++ LD SS Y GE HG P LIFD
Sbjct: 67 LKMKVGEKATLDISSDYGYGERGFHGHIPPNADLIFD 103
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,238,638
Number of Sequences: 539616
Number of extensions: 2050291
Number of successful extensions: 4138
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 4115
Number of HSP's gapped (non-prelim): 42
length of query: 152
length of database: 191,569,459
effective HSP length: 107
effective length of query: 45
effective length of database: 133,830,547
effective search space: 6022374615
effective search space used: 6022374615
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)