Query psy7937
Match_columns 152
No_of_seqs 77 out of 79
Neff 2.7
Searched_HMMs 46136
Date Fri Aug 16 22:38:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7937.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7937hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0245|consensus 97.1 8.6E-05 1.9E-09 73.8 -1.1 40 14-53 1178-1221(1221)
2 COG1066 Sms Predicted ATP-depe 83.7 0.46 1E-05 44.1 0.9 91 37-149 123-222 (456)
3 COG5494 Predicted thioredoxin/ 35.0 6.2 0.00013 34.6 -1.9 50 40-89 154-214 (265)
4 COG5290 IkappaB kinase complex 14.2 74 0.0016 33.0 0.7 27 27-53 226-258 (1243)
5 COG1856 Uncharacterized homolo 14.0 68 0.0015 28.5 0.4 62 9-75 187-248 (275)
6 PF14144 DOG1: Seed dormancy c 13.9 57 0.0012 23.3 -0.1 7 46-52 65-71 (80)
7 PF09782 NDUF_B6: NADH:ubiquin 13.8 98 0.0021 25.1 1.2 18 123-140 94-111 (156)
8 COG1772 Uncharacterized protei 13.0 1.8E+02 0.004 24.4 2.6 33 104-136 141-173 (178)
9 PF11697 DUF3293: Protein of u 12.9 2.6E+02 0.0057 19.2 3.0 28 46-74 1-28 (73)
10 PF01155 HypA: Hydrogenase exp 12.1 2.4E+02 0.0051 20.8 2.7 25 110-134 24-48 (113)
No 1
>KOG0245|consensus
Probab=97.09 E-value=8.6e-05 Score=73.79 Aligned_cols=40 Identities=65% Similarity=0.988 Sum_probs=33.8
Q ss_pred CCCccccC----CchhhhhhhhhcccCCCceeceeccCCcccCC
Q psy7937 14 PGPTSHAH----RLCVQRRQRRVLDTSSTYVRGEENLHGWRPRG 53 (152)
Q Consensus 14 ~G~fs~~l----rP~~~RR~rdLLDTs~kYVrGEEnLggWrPRG 53 (152)
+|.+.+.+ -|+++||+|.++||+..||+|||||++|+|||
T Consensus 1178 ~~v~~~~~~~~s~~~~~~~~R~~l~~~~~~~~~~~~l~~~~~~~ 1221 (1221)
T KOG0245|consen 1178 TGVYELSLCDCSDYGGQRRRRRVLDTSSAYVRGEENLAGWRPRG 1221 (1221)
T ss_pred cchhhhhcccCCCccccceeehhhhHHHHHHhhhhhhcccCCCC
Confidence 44444433 37799999999999999999999999999997
No 2
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=83.73 E-value=0.46 Score=44.12 Aligned_cols=91 Identities=31% Similarity=0.358 Sum_probs=50.4
Q ss_pred CCceeceeccCCcccCCCchhHHHHHHHHHHhHHHH--HHHHHHHHhccccccccCCCCCCCCCccccCCeeEEecccee
Q psy7937 37 STYVRGEENLHGWRPRGDSLIFDHQWELEKLTRLQA--VERVRHMLLVKDKLGYDRTPTTKSEKSCHLSDTCILISNIER 114 (152)
Q Consensus 37 ~kYVrGEEnLggWrPRGvSLI~Dhq~~~eKl~RlAE--VEktR~~L~lrekl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (152)
.=||-|||.++-|+=|.+-|-... .-+..++| +|.+...+.. .-++-|++||=--=
T Consensus 123 vLYVsGEES~~QiklRA~RL~~~~----~~l~l~aEt~~e~I~~~l~~------------------~~p~lvVIDSIQT~ 180 (456)
T COG1066 123 VLYVSGEESLQQIKLRADRLGLPT----NNLYLLAETNLEDIIAELEQ------------------EKPDLVVIDSIQTL 180 (456)
T ss_pred EEEEeCCcCHHHHHHHHHHhCCCc----cceEEehhcCHHHHHHHHHh------------------cCCCEEEEecccee
Confidence 559999999999998865553211 11111111 2333222221 11445566653222
Q ss_pred eEEEeccccchh------hHHHhHhhhhccceeEEEee-cCC
Q psy7937 115 VRIEINNIQGAI------PALLITLYFKLNSSMLIVGH-TKD 149 (152)
Q Consensus 115 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~ 149 (152)
..=++....|.+ -+-|+.+--.-|..++|||| |||
T Consensus 181 ~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVTKe 222 (456)
T COG1066 181 YSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHVTKE 222 (456)
T ss_pred ecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEEccc
Confidence 233455555633 45566666677899999999 565
No 3
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=35.04 E-value=6.2 Score=34.57 Aligned_cols=50 Identities=32% Similarity=0.523 Sum_probs=40.3
Q ss_pred eeceeccCCcccC-----CCchhHHHHHHHHHHh------HHHHHHHHHHHHhcccccccc
Q psy7937 40 VRGEENLHGWRPR-----GDSLIFDHQWELEKLT------RLQAVERVRHMLLVKDKLGYD 89 (152)
Q Consensus 40 VrGEEnLggWrPR-----GvSLI~Dhq~~~eKl~------RlAEVEktR~~L~lrekl~~~ 89 (152)
+|-+|.|.-|+|| ..++|.|-.|++++.- ..-+++..+|||..+.-++.-
T Consensus 154 ~re~ell~Ew~~~l~r~ls~gfVREi~Wl~~~~~~~~~l~~~v~~~~f~~WLlakg~vGRv 214 (265)
T COG5494 154 VREGELLEEWKPRLLRNLSSGFVREIFWLYERKISKETLTQKVPVEVFAHWLLAKGAVGRV 214 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCccccceeeehhHHHHHHHhhcccccc
Confidence 6788899999998 5678999999987654 356788999999988776643
No 4
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=14.20 E-value=74 Score=32.97 Aligned_cols=27 Identities=48% Similarity=0.821 Sum_probs=23.9
Q ss_pred hhhhhh------cccCCCceeceeccCCcccCC
Q psy7937 27 RRQRRV------LDTSSTYVRGEENLHGWRPRG 53 (152)
Q Consensus 27 RR~rdL------LDTs~kYVrGEEnLggWrPRG 53 (152)
|||=++ ||+.+.=|-|-|.+=+|+|.|
T Consensus 226 rra~rvysreg~lds~sep~~g~e~~LSWkpqg 258 (1243)
T COG5290 226 RRAFRVYSREGQLDSASEPVTGMEHQLSWKPQG 258 (1243)
T ss_pred ccceeeeccccccccccCCcccchhccccccCC
Confidence 666555 999999999999999999996
No 5
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=14.03 E-value=68 Score=28.48 Aligned_cols=62 Identities=23% Similarity=0.304 Sum_probs=44.4
Q ss_pred eEEecCCCccccCCchhhhhhhhhcccCCCceeceeccCCcccCCCchhHHHHHHHHHHhHHHHHHH
Q psy7937 9 VLLAFPGPTSHAHRLCVQRRQRRVLDTSSTYVRGEENLHGWRPRGDSLIFDHQWELEKLTRLQAVER 75 (152)
Q Consensus 9 ~~~~~~G~fs~~lrP~~~RR~rdLLDTs~kYVrGEEnLggWrPRGvSLI~Dhq~~~eKl~RlAEVEk 75 (152)
|+.-++|.=--...|++.--+-.++-++.+-++++=+||--|||| +|...+++..-++.|.+
T Consensus 187 vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~pv~iGCmrP~G-----e~rvk~d~~av~~gVd~ 248 (275)
T COG1856 187 VLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFPNPVSIGCMRPRG-----EWRVKLDKEAVLAGVDR 248 (275)
T ss_pred EEecCCchhccCCCCcCHHHHHHHHHHHHHhCCCCeeEeecCcCc-----hhHHHHHHHHHHcCCce
Confidence 456678844445667777777778888888899999999999998 44555555555555543
No 6
>PF14144 DOG1: Seed dormancy control
Probab=13.85 E-value=57 Score=23.27 Aligned_cols=7 Identities=57% Similarity=1.630 Sum_probs=5.2
Q ss_pred cCCcccC
Q psy7937 46 LHGWRPR 52 (152)
Q Consensus 46 LggWrPR 52 (152)
+|||||-
T Consensus 65 iGG~RPS 71 (80)
T PF14144_consen 65 IGGWRPS 71 (80)
T ss_pred HhcCCHH
Confidence 5888883
No 7
>PF09782 NDUF_B6: NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit; InterPro: IPR019174 The NADH dehydrogenase [ubiquinone] complex performs the first stage of electron transfer from NADH to the respiratory chain. This entry represents an accessory subunit that is not thought to be involved in catalysis [].
Probab=13.79 E-value=98 Score=25.15 Aligned_cols=18 Identities=44% Similarity=0.667 Sum_probs=15.2
Q ss_pred cchhhHHHhHhhhhccce
Q psy7937 123 QGAIPALLITLYFKLNSS 140 (152)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~ 140 (152)
-+.||+.+|..|||-|..
T Consensus 94 ~~li~~w~~~Yy~KYn~~ 111 (156)
T PF09782_consen 94 MVLIPAWIIHYYFKYNVN 111 (156)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 356899999999999876
No 8
>COG1772 Uncharacterized protein conserved in archaea [Function unknown]
Probab=13.03 E-value=1.8e+02 Score=24.36 Aligned_cols=33 Identities=30% Similarity=0.272 Sum_probs=27.7
Q ss_pred CeeEEeccceeeEEEeccccchhhHHHhHhhhh
Q psy7937 104 DTCILISNIERVRIEINNIQGAIPALLITLYFK 136 (152)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (152)
.+-|||-.-.+|..|--.--|+|||.+.++.-+
T Consensus 141 ~~YHLDiT~kgvSLETcTAIGaIpA~i~~l~~~ 173 (178)
T COG1772 141 AKYHLDITDKGVSLETCTAIGAIPAVIATLMKA 173 (178)
T ss_pred ceeeeeeccCcceeeehhhhcchHHHHHHHHHH
Confidence 467998888999999999999999999887543
No 9
>PF11697 DUF3293: Protein of unknown function (DUF3293); InterPro: IPR021710 This bacterial family of proteins has no known function.
Probab=12.86 E-value=2.6e+02 Score=19.25 Aligned_cols=28 Identities=11% Similarity=0.261 Sum_probs=20.5
Q ss_pred cCCcccCCCchhHHHHHHHHHHhHHHHHH
Q psy7937 46 LHGWRPRGDSLIFDHQWELEKLTRLQAVE 74 (152)
Q Consensus 46 LggWrPRGvSLI~Dhq~~~eKl~RlAEVE 74 (152)
++.|-|+| -...+.++.+.-.+..+++.
T Consensus 1 ITA~NP~s-~~~s~~eN~~~~~~L~~~L~ 28 (73)
T PF11697_consen 1 ITAWNPGS-QRLSDEENRRRNRQLRAELQ 28 (73)
T ss_pred CcccCCCC-CcCCHHHHHHHHHHHHHHHH
Confidence 57899996 66677777777776666664
No 10
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=12.07 E-value=2.4e+02 Score=20.82 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=18.1
Q ss_pred ccceeeEEEeccccchhhHHHhHhh
Q psy7937 110 SNIERVRIEINNIQGAIPALLITLY 134 (152)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (152)
..+.+|+++|..++|..|-.|-..|
T Consensus 24 ~kV~~V~l~iG~ls~V~pe~L~f~f 48 (113)
T PF01155_consen 24 KKVTKVRLEIGELSGVEPEALRFAF 48 (113)
T ss_dssp SEEEEEEEEEETTS---HHHHHHHH
T ss_pred CEEEEEEEEECCcccCCHHHHHHHH
Confidence 4678999999999999999875544
Done!