Query psy7937
Match_columns 152
No_of_seqs 77 out of 79
Neff 2.7
Searched_HMMs 29240
Date Fri Aug 16 22:39:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7937.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7937hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z0k_B FYVE-finger-containing 17.8 1.4E+02 0.0047 20.5 3.6 35 47-81 7-56 (69)
2 1dyo_A Endo-1,4-beta-xylanase 13.4 47 0.0016 24.1 0.4 13 43-55 16-28 (160)
3 3u5e_e 60S ribosomal protein L 12.0 72 0.0024 24.2 1.0 32 20-54 4-38 (130)
4 3qsz_A STAR-related lipid tran 11.1 61 0.0021 23.1 0.3 18 36-54 117-136 (189)
5 2rfw_A Cellulose 1,4-beta-cell 9.9 93 0.0032 28.0 1.1 16 38-53 181-196 (430)
6 3v1a_A Computational design, M 9.9 2E+02 0.0068 18.5 2.4 28 55-82 11-38 (48)
7 2dhx_A Poly (ADP-ribose) polym 9.3 1.5E+02 0.0051 21.6 1.9 23 115-137 9-31 (104)
8 4a17_X RPL32, 60S ribosomal pr 8.9 1.1E+02 0.0039 23.2 1.1 32 20-54 6-40 (134)
9 2xsp_A Cellulose 1,4-beta-cell 8.9 96 0.0033 27.9 0.8 16 38-53 183-198 (440)
10 2v3i_A Exoglucanase 1; hydrola 8.9 96 0.0033 27.9 0.8 16 38-53 181-196 (434)
No 1
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=17.76 E-value=1.4e+02 Score=20.55 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=27.7
Q ss_pred CCcccCCCc---------------hhHHHHHHHHHHhHHHHHHHHHHHHh
Q psy7937 47 HGWRPRGDS---------------LIFDHQWELEKLTRLQAVERVRHMLL 81 (152)
Q Consensus 47 ggWrPRGvS---------------LI~Dhq~~~eKl~RlAEVEktR~~L~ 81 (152)
.||.|...+ +|.-|+...++.+|..||+--..=|.
T Consensus 7 ~gW~~~~~~~~~~~~~dPL~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLr 56 (69)
T 1z0k_B 7 EGWLPLSGGQGQSEDSDPLLQQIHNITSFIRQAKAAGRMDEVRTLQENLR 56 (69)
T ss_dssp CCBCCCSSTTCSCCCSSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCcccccccccccCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 468877653 56789999999999999998776665
No 2
>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A
Probab=13.42 E-value=47 Score=24.09 Aligned_cols=13 Identities=31% Similarity=0.746 Sum_probs=10.5
Q ss_pred eeccCCcccCCCc
Q psy7937 43 EENLHGWRPRGDS 55 (152)
Q Consensus 43 EEnLggWrPRGvS 55 (152)
|..+.+|.|||..
T Consensus 16 E~g~~gW~~~g~~ 28 (160)
T 1dyo_A 16 EGSVGQWTARGPA 28 (160)
T ss_dssp SSCCTTCEEETTC
T ss_pred CCCCCCEEeecce
Confidence 5668999999953
No 3
>3u5e_e 60S ribosomal protein L32, 60S ribosomal protein L31-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_h 1s1i_0 3izs_h 3o5h_b 3o58_b 3u5i_e 4b6a_e 3jyw_0
Probab=12.02 E-value=72 Score=24.23 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=20.0
Q ss_pred cCCchhhhhhhhh--cccCCCceeceeccCCc-ccCCC
Q psy7937 20 AHRLCVQRRQRRV--LDTSSTYVRGEENLHGW-RPRGD 54 (152)
Q Consensus 20 ~lrP~~~RR~rdL--LDTs~kYVrGEEnLggW-rPRGv 54 (152)
...|..+++...- =--+.+|++=.+ +| +|||.
T Consensus 4 ~~~~kivKkrtkkF~R~~sdry~ri~~---~WRKPrGi 38 (130)
T 3u5e_e 4 LPHPKIVKKHTKKFKRHHSDRYHRVAE---NWRKQKGI 38 (130)
T ss_dssp CCCSCCCCSCCSCCCCTTTTTCTTSCS---SCCCCCCS
T ss_pred CCCCceeeccCCCccccccccccccCC---CCCCCCCc
Confidence 3455555554433 345678988765 57 69985
No 4
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=11.05 E-value=61 Score=23.09 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=14.6
Q ss_pred CCCceeceeccCCc--ccCCC
Q psy7937 36 SSTYVRGEENLHGW--RPRGD 54 (152)
Q Consensus 36 s~kYVrGEEnLggW--rPRGv 54 (152)
+..|||++-..++| +| |.
T Consensus 117 ~~~~VR~~~~~~~~~i~p-~~ 136 (189)
T 3qsz_A 117 RKGKVRIPRAKGQWTLVP-DA 136 (189)
T ss_dssp CTTSEECCCEEEEEEEEE-CS
T ss_pred CCCeEEeeEeeEEEEEEE-CC
Confidence 46899999999999 66 54
No 5
>2rfw_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycosidase; 1.60A {Melanocarpus albomyces} PDB: 2rfy_A* 2rfz_A* 2rg0_A*
Probab=9.93 E-value=93 Score=27.97 Aligned_cols=16 Identities=31% Similarity=0.937 Sum_probs=14.6
Q ss_pred CceeceeccCCcccCC
Q psy7937 38 TYVRGEENLHGWRPRG 53 (152)
Q Consensus 38 kYVrGEEnLggWrPRG 53 (152)
+++.||-|+.+|+|-.
T Consensus 181 kfinG~aN~~gw~~~~ 196 (430)
T 2rfw_A 181 KFVGGKANIEGWKSST 196 (430)
T ss_dssp SEETTEECCTTCCCCS
T ss_pred ceecceeccccccCCC
Confidence 7999999999999964
No 6
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=9.88 E-value=2e+02 Score=18.48 Aligned_cols=28 Identities=14% Similarity=0.143 Sum_probs=23.6
Q ss_pred chhHHHHHHHHHHhHHHHHHHHHHHHhc
Q psy7937 55 SLIFDHQWELEKLTRLQAVERVRHMLLV 82 (152)
Q Consensus 55 SLI~Dhq~~~eKl~RlAEVEktR~~L~l 82 (152)
.+|..|+...++.+|..||+.-..=|..
T Consensus 11 ~~I~~~I~qAk~~rRfdEV~~L~~NL~E 38 (48)
T 3v1a_A 11 KNIHSFIHQAKAAGRMDEVRTLQENLHQ 38 (48)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4789999999999999999987766653
No 7
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=9.31 E-value=1.5e+02 Score=21.65 Aligned_cols=23 Identities=39% Similarity=0.733 Sum_probs=19.2
Q ss_pred eEEEeccccchhhHHHhHhhhhc
Q psy7937 115 VRIEINNIQGAIPALLITLYFKL 137 (152)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~ 137 (152)
..|++.||.-.+|--++.|||.-
T Consensus 9 ~~I~V~~lPp~~~~e~L~LYFEn 31 (104)
T 2dhx_A 9 VAVEVRGLPPAVPDELLTLYFEN 31 (104)
T ss_dssp CEEEEESCCTTSCHHHHHHHHHC
T ss_pred cEEEEECCCCCCChhHheEEEeC
Confidence 45777888889999999999974
No 8
>4a17_X RPL32, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_X 4a1c_X 4a1e_X
Probab=8.94 E-value=1.1e+02 Score=23.22 Aligned_cols=32 Identities=19% Similarity=0.421 Sum_probs=20.1
Q ss_pred cCCchhhhhhhhh--cccCCCceeceeccCCc-ccCCC
Q psy7937 20 AHRLCVQRRQRRV--LDTSSTYVRGEENLHGW-RPRGD 54 (152)
Q Consensus 20 ~lrP~~~RR~rdL--LDTs~kYVrGEEnLggW-rPRGv 54 (152)
...|..+++...- =--+.+|++=.+ +| +|||.
T Consensus 6 ~~~~kivKkrtkkF~R~~sdry~ri~~---~WRKPrGi 40 (134)
T 4a17_X 6 VAHKKIIKKRTKKFVRFESEDFAKLDS---SWRRPRGI 40 (134)
T ss_dssp CCCCCCCCSCCSCCCCTTTTTCSSSCC---SCCCCCCS
T ss_pred CCCCcceeccCCCccccccccccccCC---CCCCCCCc
Confidence 3455556554433 345678998765 57 69985
No 9
>2xsp_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase; HET: NAG EPE XYS; 1.70A {Heterobasidion annosum} PDB: 2yg1_A*
Probab=8.89 E-value=96 Score=27.95 Aligned_cols=16 Identities=38% Similarity=1.080 Sum_probs=14.7
Q ss_pred CceeceeccCCcccCC
Q psy7937 38 TYVRGEENLHGWRPRG 53 (152)
Q Consensus 38 kYVrGEEnLggWrPRG 53 (152)
+++.||-|+.+|+|-.
T Consensus 183 kfinG~aN~~gw~~~~ 198 (440)
T 2xsp_A 183 KFINGEANILGWTPSS 198 (440)
T ss_dssp SEETTEECCTTCEECS
T ss_pred ceecceeccccccCCC
Confidence 7999999999999974
No 10
>2v3i_A Exoglucanase 1; hydrolase, glycosidase, glycoprotein, carbohydrate metabolism, polysaccharide degradation, pyrrolidone carboxylic acid; HET: NAG XX6; 1.05A {Hypocrea jecorina} SCOP: b.29.1.10 PDB: 1dy4_A* 1cel_A* 2v3r_A* 7cel_A* 6cel_A* 3cel_A* 2cel_A* 5cel_A* 4cel_A* 1q2b_A* 1egn_A* 1q2e_A* 2y9l_A* 2y9n_A*
Probab=8.89 E-value=96 Score=27.90 Aligned_cols=16 Identities=31% Similarity=1.080 Sum_probs=14.7
Q ss_pred CceeceeccCCcccCC
Q psy7937 38 TYVRGEENLHGWRPRG 53 (152)
Q Consensus 38 kYVrGEEnLggWrPRG 53 (152)
+++.||-|+.+|+|-.
T Consensus 181 kfinG~aN~~gw~~~~ 196 (434)
T 2v3i_A 181 KFINGQANVEGWEPSS 196 (434)
T ss_dssp SEETTEECCTTCEECT
T ss_pred ceecceeccccccCCC
Confidence 7999999999999974
Done!