RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7937
         (152 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.8 bits (63), Expect = 0.45
 Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 48/77 (62%)

Query: 65  EKLTRLQAVERVRHMLLVKDKLGYDRTPTTKSEKSCHLSDTCILISNIERVRIEINNIQG 124
           EK    QA+++++  L    KL Y               D+                   
Sbjct: 18  EK----QALKKLQASL----KL-Y--AD-----------DS------------------- 36

Query: 125 AIPALLITLYFKLNSSM 141
           A PAL I       ++M
Sbjct: 37  A-PALAI------KATM 46


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 28.3 bits (62), Expect = 1.2
 Identities = 7/46 (15%), Positives = 14/46 (30%)

Query: 39  YVRGEENLHGWRPRGDSLIFDHQWELEKLTRLQAVERVRHMLLVKD 84
             + + N         ++         +L RL   +   + LLV  
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.9 bits (59), Expect = 3.0
 Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 22/95 (23%)

Query: 13   FPGPTSHAHRLCVQRRQRRVLDTSST-YVRGEENLHGWRPRGDSLIFDHQWELEKLTR-- 69
            F G      R   +     + +T     ++ E+          S  F  +  L   T+  
Sbjct: 1676 FGGEKGKRIR---ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT 1732

Query: 70   ---LQAVER--VRHM----LLVKDK------LG-Y 88
               L  +E+     +    L+  D       LG Y
Sbjct: 1733 QPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEY 1767


>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase;
           2.71A {Homo sapiens}
          Length = 162

 Score = 26.3 bits (57), Expect = 3.3
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 12/65 (18%)

Query: 10  LLAFPGPTSHAHRLCVQRRQRRVLDTSSTYVRGEENLHGWRPRGDSL--IFDHQWELEK- 66
            L   G    A   CV+ R+R+V +  S          G+ P   SL  +F H  ++ + 
Sbjct: 84  WLDRHGNLDEAVEECVRTRRRKVQELQSL---------GFGPEEGSLQALFQHGGDVSRA 134

Query: 67  LTRLQ 71
           LT LQ
Sbjct: 135 LTELQ 139


>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein
           structure initiative; HET: MSE; 1.47A {Corynebacterium
           glutamicum atcc 13032}
          Length = 317

 Score = 26.5 bits (58), Expect = 4.3
 Identities = 5/32 (15%), Positives = 12/32 (37%)

Query: 2   GADMGDLVLLAFPGPTSHAHRLCVQRRQRRVL 33
           G   G+++L+        ++        R +L
Sbjct: 234 GRRYGNIILMGSDTEFFSSNSTEASAITRELL 265


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0510    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,268,537
Number of extensions: 117039
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 7
Length of query: 152
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 67
Effective length of database: 4,328,508
Effective search space: 290010036
Effective search space used: 290010036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.7 bits)