BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7938
(305 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 250 bits (639), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 112/194 (57%), Positives = 148/194 (76%), Gaps = 1/194 (0%)
Query: 90 KVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVT 149
K+LF+ I++D D+Q+ILEFFG+ K+E P++RLI LEE+M KYKP + E++ + + F
Sbjct: 167 KILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCH 226
Query: 150 EFLAGNLKQHLLSQPLPEDWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLA 209
FL G +K HL+SQ LPEDWDK VKVLV NF+++AFD+ K+V VEFYAPWCGHCKQLA
Sbjct: 227 RFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLA 286
Query: 210 PIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKLY-AKDDNRVIDYNGERVLE 268
PI+DKLGE + D ++I IAK+D+T NE+E K+ SFPTLK + A D VIDYNGER L+
Sbjct: 287 PIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPTLKFFPASADRTVIDYNGERTLD 346
Query: 269 ALSNFVESGGKEGG 282
F+ESGG++G
Sbjct: 347 GFKKFLESGGQDGA 360
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 1 MSKDEVPSLRLIRLEEDMAKYKPATPEINVDTVRSFVTEFLAGNLK 46
+ K+E P++RLI LEE+M KYKP + E+ + + F FL G +K
Sbjct: 189 LKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIK 234
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 141 bits (356), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 64/103 (62%), Positives = 80/103 (77%), Gaps = 1/103 (0%)
Query: 174 VKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDAT 233
VKVLV NF+++AFD+ K+V VEFYAPWCGHCKQLAPI+DKLGE + D ++I IAK+D+T
Sbjct: 9 VKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDST 68
Query: 234 VNELEHTKITSFPTLKLY-AKDDNRVIDYNGERVLEALSNFVE 275
NE+E K+ SFPTLK + A D VIDYNGER L+ F+E
Sbjct: 69 ANEVEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLE 111
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 92/147 (62%), Gaps = 10/147 (6%)
Query: 147 FVTEFLAGNLKQHLLSQPLPEDWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCK 206
F+ ++ GNLK++L S+P+PE D VKV+VA NFDEI +++K VL+EFYAPWCGHCK
Sbjct: 328 FLQDYFDGNLKRYLKSEPIPESND-GPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCK 386
Query: 207 QLAPIYDKLGEKFADRDDITIAKIDATVNELEHT-KITSFPTLKLYAKDDNRVID---YN 262
L P Y +LGEK + +I IAK+DAT N++ ++ FPT +Y N+ ++ Y
Sbjct: 387 NLEPKYKELGEKLSKDPNIVIAKMDATANDVPSPYEVRGFPT--IYFSPANKKLNPKKYE 444
Query: 263 GERVLEALSNFVESGGKEGGLPSGAQQ 289
G R LS+F+ +E P Q+
Sbjct: 445 GGR---ELSDFISYLQREATNPPVIQE 468
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 193 VLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTK--ITSFPTLKL 250
+LVEF+APWCGH K+LAP Y+ + + + +AK+D T N K ++ +PTLK+
Sbjct: 24 MLVEFFAPWCGHAKRLAPEYEAAATRL--KGIVPLAKVDCTANTNTCNKYGVSGYPTLKI 81
Query: 251 YAKDDNRVIDYNGERVLEALSNFVESGGKEGGLP 284
+ +D Y+G R + + + ++ +P
Sbjct: 82 F-RDGEEAGAYDGPRTADGIVSHLKKQAGPASVP 114
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 84/132 (63%), Gaps = 7/132 (5%)
Query: 154 GNLKQHLLSQPLPEDWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYD 213
GNLK++L S+P+PE D VKV+VA NFDEI +++K VL+EFYAPWCGHCK L P Y
Sbjct: 10 GNLKRYLKSEPIPESND-GPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYK 68
Query: 214 KLGEKFADRDDITIAKIDATVNELEHT-KITSFPTLKLYAKDDNRVID---YNGERVLEA 269
+LGEK + +I IAK+DAT N++ ++ FPT +Y N+ ++ Y G R L
Sbjct: 69 ELGEKLSKDPNIVIAKMDATANDVPSPYEVRGFPT--IYFSPANKKLNPKKYEGGRELSD 126
Query: 270 LSNFVESGGKEG 281
++++ G
Sbjct: 127 FISYLQREATSG 138
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/110 (48%), Positives = 73/110 (66%), Gaps = 5/110 (4%)
Query: 174 VKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFAD---RDDITIAKI 230
V V+VA N++EI D +K VL+EFYAPWCGHCK LAP Y++LG +A +D + IAK+
Sbjct: 9 VTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKV 68
Query: 231 DATVNELEHTKITSFPTLKLY-AKDDNRVIDYNGERVLEALSNFVESGGK 279
DAT N++ +I FPT+KLY A + + Y+G R +E L F+ GK
Sbjct: 69 DATANDVPD-EIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGK 117
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 66/106 (62%), Gaps = 4/106 (3%)
Query: 174 VKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDAT 233
VKV+V FD I D K VL+EFYAPWCGHCKQL PIY LG+K+ + D+ IAK+DAT
Sbjct: 9 VKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDAT 68
Query: 234 VNEL--EHTKITSFPTLKLYAKDD--NRVIDYNGERVLEALSNFVE 275
N++ + K+ FPT+ D N + G R LE LS F++
Sbjct: 69 ANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFID 114
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 119/242 (49%), Gaps = 36/242 (14%)
Query: 54 LYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVL-FVTINTDEEDHQKILEFFGM 112
L+ + EE++ +YKP TE N ++ FV+I D +K G
Sbjct: 244 LFYNDEEELEEYKP------------LFTELAKKNRGLMNFVSI-----DARKFGRHAGN 286
Query: 113 --SKDEVPSLRLIRLEEDMAKYKPATPEISVD-----------TVRSFVTEFLAGNLKQH 159
K++ P + + ED+ P E + D + S V +FL G+
Sbjct: 287 LNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDASPI 346
Query: 160 LLSQPLPEDWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKF 219
+ SQ + E+ D + + LV N DEI D K VLV +YAPWCGHCK+LAP Y +L + +
Sbjct: 347 VKSQEIFENQDSSVFQ-LVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTY 405
Query: 220 AD-RDDITIAKIDATVNELEHTKITSFPTLKLY--AKDDNRVIDYNGERVLEALSNFVES 276
A+ D+ IAK+D T N++ I +PT+ LY K V+ Y G R L++L +F++
Sbjct: 406 ANATSDVLIAKLDHTENDVRGVVIEGYPTIVLYPGGKKSESVV-YQGSRSLDSLFDFIKE 464
Query: 277 GG 278
G
Sbjct: 465 NG 466
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 74/126 (58%), Gaps = 13/126 (10%)
Query: 153 AGNLKQHLLSQPLPEDWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIY 212
AG+++Q ++ PED +AV L +F+E VL EF+APWCGHCK +AP Y
Sbjct: 1 AGHMQQEAVA---PED---SAVVKLATDSFNEY-IQSHDLVLAEFFAPWCGHCKNMAPEY 53
Query: 213 DKLGEKFADRDDITIAKIDATVNE---LEHTKITSFPTLKLYAKDD-NRVIDYNGERVLE 268
K E ++ +IT+A+ID T N+ +EH I FP+LK++ D N IDY G R E
Sbjct: 54 VKAAETLVEK-NITLAQIDCTENQDLCMEHN-IPGFPSLKIFKNSDVNNSIDYEGPRTAE 111
Query: 269 ALSNFV 274
A+ F+
Sbjct: 112 AIVQFM 117
>pdb|3BJ5|A Chain A, Alternative Conformations Of The X Region Of Human Protein
Disulphide- Isomerase Modulate Exposure Of The Substrate
Binding B' Domain
Length = 147
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 61/83 (73%)
Query: 90 KVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVT 149
K+LF I++D D+Q+ILEFFG+ K+E P++RLI LEE+M KYKP + E++ + + F
Sbjct: 64 KILFAFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCH 123
Query: 150 EFLAGNLKQHLLSQPLPEDWDKN 172
FL G +K HL+SQ LPEDWDK
Sbjct: 124 RFLEGKIKPHLMSQELPEDWDKQ 146
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 1 MSKDEVPSLRLIRLEEDMAKYKPATPEINVDTVRSFVTEFLAGNLK 46
+ K+E P++RLI LEE+M KYKP + E+ + + F FL G +K
Sbjct: 86 LKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIK 131
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 63/104 (60%), Gaps = 6/104 (5%)
Query: 170 DKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRD-DITIA 228
++N V VL NFD DK VL+EFYAPWCGHCKQ AP Y+K+ D D I +A
Sbjct: 15 EENGVWVLNDGNFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVA 73
Query: 229 KIDATVNELEHTK--ITSFPTLKLYAKDDNRVIDYNGERVLEAL 270
KIDAT + +K ++ +PT+K+ K + +DY+G R E +
Sbjct: 74 KIDATSASMLASKFDVSGYPTIKILKK--GQAVDYDGSRTQEEI 115
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 64/104 (61%), Gaps = 6/104 (5%)
Query: 170 DKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRD-DITIA 228
++N V VL +NFD DK VL+EFYAPWCGHCKQ AP Y+K+ D+D I +A
Sbjct: 13 EENGVLVLNDANFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVA 71
Query: 229 KIDATVNELEHTK--ITSFPTLKLYAKDDNRVIDYNGERVLEAL 270
KIDAT + ++ ++ +PT+K+ K + +DY G R E +
Sbjct: 72 KIDATSASVLASRFDVSGYPTIKILKK--GQAVDYEGSRTQEEI 113
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 74/131 (56%), Gaps = 13/131 (9%)
Query: 140 SVDTVRSFVTEFLAGNLKQHLLSQPLPEDWDK--NAVKVLVASNFDEIAFDKSKHVLVEF 197
+VD S E + +++ +SQP DW VL NFDE+ D + +LVEF
Sbjct: 101 AVDYEGSRTQEEIVAKVRE--VSQP---DWTPPPEVTLVLTKENFDEVVND-ADIILVEF 154
Query: 198 YAPWCGHCKQLAPIYDKLGEKFADRD-DITIAKIDATVNE--LEHTKITSFPTLKLYAKD 254
YAPWCGHCK+LAP Y+K ++ + R I +AK+DAT + ++ +PTLK++ K
Sbjct: 155 YAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRK- 213
Query: 255 DNRVIDYNGER 265
R DYNG R
Sbjct: 214 -GRPYDYNGPR 223
>pdb|2K18|A Chain A, Solution Structure Of Bb' Domains Of Human Protein
Disulfide Isomerase
Length = 228
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 54/73 (73%)
Query: 90 KVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVT 149
K+LF+ I++D D+Q+ILEFFG+ K+E P++RLI LEE+M KYKP + E++ + + F
Sbjct: 156 KILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCH 215
Query: 150 EFLAGNLKQHLLS 162
FL G +K HL+S
Sbjct: 216 RFLEGKIKPHLMS 228
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 1 MSKDEVPSLRLIRLEEDMAKYKPATPEINVDTVRSFVTEFLAGNLK 46
+ K+E P++RLI LEE+M KYKP + E+ + + F FL G +K
Sbjct: 178 LKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIK 223
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 59/92 (64%), Gaps = 6/92 (6%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRD-DITIAKIDAT-- 233
L NFD++ + + +LVEFYAPWCGHCK+LAP Y+K ++ + R I +AK+DAT
Sbjct: 12 LTKDNFDDVV-NNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQ 70
Query: 234 VNELEHTKITSFPTLKLYAKDDNRVIDYNGER 265
+ + ++ +PTLK++ K R DYNG R
Sbjct: 71 TDLAKRFDVSGYPTLKIFRK--GRPFDYNGPR 100
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 54/94 (57%), Gaps = 6/94 (6%)
Query: 166 PEDWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKF-ADRDD 224
PE+ D V VL SNF E A K++LVEFYAPWCGHCK LAP Y K K A+ +
Sbjct: 3 PEEEDH--VLVLRKSNFAE-ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSE 59
Query: 225 ITIAKIDATVNE--LEHTKITSFPTLKLYAKDDN 256
I +AK+DAT + + +PT+K + D
Sbjct: 60 IRLAKVDATEESDLAQQYGVRGYPTIKFFRNGDT 93
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFAD--RDDITIAKIDATV 234
L +FD+ D +VEFYAPWCGHCK L P + + + + + +A +DATV
Sbjct: 12 LTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATV 71
Query: 235 NELEHTK--ITSFPTLKLYAKDDNRVIDYNGERV 266
N++ ++ I FPT+K++ K ++ V DY+G R
Sbjct: 72 NQVLASRYGIRGFPTIKIFQKGESPV-DYDGGRT 104
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE 236
L SNF+ LVEFYAPWCGHC++L P + K D + D +
Sbjct: 22 LTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSL 81
Query: 237 LEHTKITSFPTLKLYAKDDNRVIDYNGERVLEAL 270
+ FPT+K++ + N+ DY G R EA+
Sbjct: 82 GGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAI 115
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 6/112 (5%)
Query: 172 NAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEK-FADRDDITIAKI 230
V L +NFD+ + ++FYAPWCGHCK LAP +++L +K F + IA++
Sbjct: 7 GTVLALTENNFDDTIAEGI--TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEV 64
Query: 231 DATV--NELEHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVESGGKE 280
D T N + +PTL L+ + +V +++G R L++L FV S K+
Sbjct: 65 DCTAERNICSKYSVRGYPTLLLF-RGGKKVSEHSGGRDLDSLHRFVLSQAKD 115
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 6/110 (5%)
Query: 174 VKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEK-FADRDDITIAKIDA 232
V L +NFD+ + ++FYAPWCGHCK LAP +++L +K F + IA++D
Sbjct: 2 VLALTENNFDDTIAEGI--TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDC 59
Query: 233 TV--NELEHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVESGGKE 280
T N + +PTL L+ + +V +++G R L++L FV S K+
Sbjct: 60 TAERNICSKYSVRGYPTLLLF-RGGKKVSEHSGGRDLDSLHRFVLSQAKD 108
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 172 NAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEK-FADRDDITIAKI 230
+ V L +NFD+ + ++FYAPWCGHCK LAP +++L +K F + IA++
Sbjct: 5 STVLALTENNFDDTIAEGI--TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEV 62
Query: 231 DATV--NELEHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVES 276
D T N + +PTL L+ + +V +++G R L++L FV S
Sbjct: 63 DCTAERNICSKYSVRGYPTLLLF-RGGKKVSEHSGGRDLDSLHRFVLS 109
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 193 VLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTK--ITSFPTLKL 250
+LVEF+APWCGHCK+LAP Y+ + + + +AK+D T N K ++ +PTLK+
Sbjct: 24 MLVEFFAPWCGHCKRLAPEYEAAATRL--KGIVPLAKVDCTANTNTCNKYGVSGYPTLKI 81
Query: 251 YAKDDNRVIDYNGERVLEAL 270
+ +D Y+G R + +
Sbjct: 82 F-RDGEEAGAYDGPRTADGI 100
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 173 AVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDA 232
A L +NF + A K VLV+F+A WCG C+ +AP+ ++ E AD+ +T+AK++
Sbjct: 1 ATMTLTDANFQQ-AIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK--VTVAKLNV 57
Query: 233 TVNELEHTK--ITSFPTLKLYAKDD--NRVIDYNGERVLEA 269
N ++ I S PTL L+ + ++I Y + LEA
Sbjct: 58 DENPETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEA 98
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 173 AVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDA 232
A L +NF + A K VLV+F+A WCG C+ +AP+ ++ E AD+ +T+AK++
Sbjct: 1 ATMTLTDANFQQ-AIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK--VTVAKLNV 57
Query: 233 TVNELEHTK--ITSFPTLKLY--AKDDNRVIDYNGERVLEA 269
N ++ I S PTL L+ + ++I Y + LEA
Sbjct: 58 DENPETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEA 98
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Query: 179 ASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELE 238
AS +D K V+V+F+A WCG CK +AP+ +K E+++D + +D + +
Sbjct: 15 ASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKL-DVDEVSDVAQ 73
Query: 239 HTKITSFPTLKLY--AKDDNRVIDYNGERVLEALSNFV 274
+++S PTL Y K+ RV+ N + +A+++ V
Sbjct: 74 KAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAIASNV 111
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Query: 179 ASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELE 238
AS +D K V+V+F+A WCG CK +AP+ +K E+++D + +D + +
Sbjct: 8 ASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKL-DVDEVSDVAQ 66
Query: 239 HTKITSFPTLKLY--AKDDNRVIDYNGERVLEALSNFV 274
+++S PTL Y K+ RV+ N + +A+++ V
Sbjct: 67 KAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAIASNV 104
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 7/101 (6%)
Query: 173 AVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDA 232
A L +NF + A VLV+F+A WCG C+ +AP+ ++ E AD+ +T+AK++
Sbjct: 1 ATMTLTDANFQQ-AIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK--VTVAKLNV 57
Query: 233 TVNELEHTK--ITSFPTLKLYAKDD--NRVIDYNGERVLEA 269
N ++ I S PTL L+ + ++I Y + LEA
Sbjct: 58 DENPETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEA 98
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 180 SNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEH 239
S+FD+ S VLV+F+A WCG CK + P ++G++FA + + ID
Sbjct: 10 SSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNA 69
Query: 240 TKITSFPTLKLYAKDDNRVIDYN-GERVLEALSNFVES 276
++ S PTL L D +VID G L +VES
Sbjct: 70 YQVRSIPTLMLVR--DGKVIDKKVGALPKSQLKAWVES 105
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 7/101 (6%)
Query: 173 AVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDA 232
A L +NF + A VLV+F+A WCG C+ +AP+ ++ E AD+ +T+AK++
Sbjct: 1 ATMTLTDANFQQ-AIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK--VTVAKLNV 57
Query: 233 TVNELEHTK--ITSFPTLKLY--AKDDNRVIDYNGERVLEA 269
N ++ I S PTL L+ + ++I Y + LEA
Sbjct: 58 DENPETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEA 98
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE 236
L +FD+ + + LVEFYAPWCGHCK+L+ + K ++ + D N+
Sbjct: 22 LTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNK 81
Query: 237 LEHTK--ITSFPTLKLYAK---DDNRVIDYNGERVLEALSNFVESGGK 279
K + FPTL ++ D ++ ID N ++ A +N V SG +
Sbjct: 82 ALCAKYDVNGFPTLMVFRPPKIDLSKPID-NAKKSFSAHANEVYSGAR 128
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 181 NFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHT 240
NF++ K VLV+F+APWCG C+ +API ++L +++ + + +D N
Sbjct: 10 NFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQY 69
Query: 241 KITSFPTLKLYAKDDNRVID 260
I S PTL L+ + +V+D
Sbjct: 70 GIRSIPTLLLFK--NGQVVD 87
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 63/113 (55%), Gaps = 9/113 (7%)
Query: 168 DWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITI 227
D +K+A + ++F +K VLV+F+A WCG CK +AP+ +++ + A D+T+
Sbjct: 3 DSEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERA--TDLTV 60
Query: 228 AKIDATVN--ELEHTKITSFPTLKLYAKDDN---RVIDYNGE-RVLEALSNFV 274
AK+D N + ++ S PTL L+ KD R++ G+ +L LS+ V
Sbjct: 61 AKLDVDTNPETARNFQVVSIPTLILF-KDGQPVKRIVGAKGKAALLRELSDVV 112
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 7/107 (6%)
Query: 174 VKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIY----DKLGEKFADRDDITIAK 229
+ L N DEI + + LV FYA WC + L PI+ D + E+F + + + A+
Sbjct: 7 ITSLDTENIDEI-LNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFAR 65
Query: 230 IDATVNE--LEHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFV 274
+D + + +I+ +PTLKL+ +Y G+R ++AL++++
Sbjct: 66 VDCDQHSDIAQRYRISKYPTLKLFRNGXXXKREYRGQRSVKALADYI 112
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 63/113 (55%), Gaps = 9/113 (7%)
Query: 168 DWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITI 227
D +K+A + ++F +K VLV+F+A WCG CK +AP+ +++ + A D+T+
Sbjct: 8 DSEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERA--TDLTV 65
Query: 228 AKIDATVN--ELEHTKITSFPTLKLYAKDDN---RVIDYNGE-RVLEALSNFV 274
AK+D N + ++ S PTL L+ KD R++ G+ +L LS+ V
Sbjct: 66 AKLDVDTNPETARNFQVVSIPTLILF-KDGQPVKRIVGAKGKAALLRELSDVV 117
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 12/99 (12%)
Query: 179 ASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL- 237
AS FD A + K V+V+FYA WCG CK +AP+ +K E++ D K+D V+EL
Sbjct: 8 ASEFDS-AIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQAD---FYKLD--VDELG 61
Query: 238 ---EHTKITSFPTLKLY--AKDDNRVIDYNGERVLEALS 271
+ ++++ PTL L+ K+ +V+ N + +A++
Sbjct: 62 DVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIA 100
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 12/99 (12%)
Query: 179 ASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL- 237
AS FD A + K V+V+FYA WCG CK +AP+ +K E++ D K+D V+EL
Sbjct: 14 ASEFDS-AIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQAD---FYKLD--VDELG 67
Query: 238 ---EHTKITSFPTLKLY--AKDDNRVIDYNGERVLEALS 271
+ ++++ PTL L+ K+ +V+ N + +A++
Sbjct: 68 DVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIA 106
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 193 VLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTK--ITSFPTLKL 250
VL +F+APWCG CK +AP+ ++L ++ D+ + I KID N+ K + S PTL L
Sbjct: 20 VLADFWAPWCGPCKMIAPVLEELDQEMGDK--LKIVKIDVDENQETAGKYGVMSIPTL-L 76
Query: 251 YAKDDNRVIDYNGERVLEALSNFV 274
KD V G + EAL V
Sbjct: 77 VLKDGEVVETSVGFKPKEALQELV 100
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 179 ASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELE 238
AS +D K V+V+F+A WCG K +AP+ +K E+++D + +D + +
Sbjct: 16 ASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKL-DVDEVSDVAQ 74
Query: 239 HTKITSFPTLKLY--AKDDNRVIDYNGERVLEALSNFV 274
+++S PTL Y K+ RV+ N + +A+++ V
Sbjct: 75 KAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAIASNV 112
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 181 NFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHT 240
+F++ K VLV+F+A WCG C+Q+AP + + ++ D+ +I ID
Sbjct: 14 SFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKY 73
Query: 241 KITSFPTLKLY 251
+ S PTL +Y
Sbjct: 74 GVMSIPTLNVY 84
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 179 ASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELE 238
AS +D K V+V+F+A WCG K +AP+ +K E+++D + +D + +
Sbjct: 8 ASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKL-DVDEVSDVAQ 66
Query: 239 HTKITSFPTLKLY--AKDDNRVIDYNGERVLEALSNFV 274
+++S PTL Y K+ RV+ N + +A+++ V
Sbjct: 67 KAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAIASNV 104
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 181 NFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHT 240
F + + S VLV+F+APWCG C+ +AP+ D++ ++ D+ D + N
Sbjct: 10 TFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEY 69
Query: 241 KITSFPTLKLY 251
I S PT+ ++
Sbjct: 70 GIRSIPTIMVF 80
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE 236
L +FD +LV+F+A WCGHCK +API D++ +++ + +T+AK++ N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQGK--LTVAKLNIDQNP 64
Query: 237 LEHTK--ITSFPTLKLY 251
K I PTL L+
Sbjct: 65 GTAPKYGIRGIPTLLLF 81
>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like
Hypothetical Protein Q4dv70
Length = 127
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLG-EKFADRDDITI--AKIDAT 233
L FD I D K V V +Y PW H ++D L + R+ +T A+ID
Sbjct: 20 LTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGE 79
Query: 234 --VNELEHTKITSFPTLKLYAK-DDNRVIDYNGERVLEALSNFV 274
+ +E +++ FPT++ Y + D +Y+G+R L + +FV
Sbjct: 80 KYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFV 123
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 8/105 (7%)
Query: 168 DWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITI 227
D +K+A + ++F +K VLV+F+A WCG K +AP+ +++ + A D+T+
Sbjct: 5 DSEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATERA--TDLTV 62
Query: 228 AKIDATVN--ELEHTKITSFPTLKLYAKDDN---RVIDYNGERVL 267
AK+D N + ++ S PTL L+ KD R++ G+ L
Sbjct: 63 AKLDVDTNPETARNFQVVSIPTLILF-KDGQPVKRIVGAKGKAAL 106
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 11/82 (13%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHT----KITS 244
K+K V+V+F+A WCG CK +AP++ +L EK+ D K+D V++LE T I++
Sbjct: 32 KNKLVVVDFFATWCGPCKTIAPLFKELSEKY----DAIFVKVD--VDKLEETARKYNISA 85
Query: 245 FPTLKLYAKDDNRVIDYNGERV 266
PT + K+ +V D G +
Sbjct: 86 MPTF-IAIKNGEKVGDVVGASI 106
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 174 VKVLVA-SNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDA 232
VK++ + + FD I +++ V+V+F+A WCG CK++AP Y++ + + I + +D
Sbjct: 10 VKIVTSQAEFDSI-ISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKV-DVDE 67
Query: 233 TVNELEHTKITSFPTLKLY 251
E ITS PT K+Y
Sbjct: 68 VSEVTEKENITSMPTFKVY 86
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE 236
L +FD +LV+F+A WCG CK +API D++ +++ + +T+AK++ N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNIDQNP 64
Query: 237 LEHTK--ITSFPTLKLY 251
K I S PTL L+
Sbjct: 65 GTAPKYGIRSIPTLLLF 81
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE 236
L +FD +LV+F+A WCG CK +API D++ E++ + +T+AK++ N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQGK--LTVAKLNIDQNP 64
Query: 237 LEHTK--ITSFPTLKLY 251
K I PTL L+
Sbjct: 65 GTAPKYGIRGIPTLLLF 81
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 11/82 (13%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHT----KITS 244
K+K V+V+F+A WCG CK +AP++ +L EK+ D K+D V++LE T I++
Sbjct: 23 KNKLVVVDFFATWCGPCKTIAPLFKELSEKY----DAIFVKVD--VDKLEETARKYNISA 76
Query: 245 FPTLKLYAKDDNRVIDYNGERV 266
PT + K+ +V D G +
Sbjct: 77 MPTF-IAIKNGEKVGDVVGASI 97
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 180 SNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEH 239
S++ E + V+V+F+APWCG CK +AP+ D+L ++++ + + D
Sbjct: 8 SSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQ 67
Query: 240 TKITSFPTLKLYAKDDNRVIDYNGER 265
I S PT+ + NGER
Sbjct: 68 YNIRSIPTVLFFK---------NGER 84
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 180 SNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEH 239
S++ E + V+V+F+APWCG CK +AP+ D+L ++++ + + D
Sbjct: 7 SSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQ 66
Query: 240 TKITSFPTLKLYAKDDNRVIDYNGER 265
I S PT+ + NGER
Sbjct: 67 YNIRSIPTVLFFK---------NGER 83
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATV-- 234
L F+E H +V+FYAPWCG C+ AP ++ L + + K+D
Sbjct: 8 LTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMI--KGKVRAGKVDCQAYP 65
Query: 235 NELEHTKITSFPTLKLY 251
+ I ++P++KLY
Sbjct: 66 QTCQKAGIKAYPSVKLY 82
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 193 VLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTK--ITSFPTLKL 250
VL +F+APWCG K +AP+ ++L ++ D+ + I KID N+ K + S PTL L
Sbjct: 20 VLADFWAPWCGPSKMIAPVLEELDQEMGDK--LKIVKIDVDENQETAGKYGVMSIPTL-L 76
Query: 251 YAKDDNRVIDYNGERVLEALSNFV 274
KD V G + EAL V
Sbjct: 77 VLKDGEVVETSVGFKPKEALQELV 100
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE 236
L +FD +LV+F+A WCG CK +API D++ +++ + +T+AK++ N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNIDQNP 64
Query: 237 LEHTK--ITSFPTLKLYAKDD 255
K I PTL L+ D
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGD 85
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 12/99 (12%)
Query: 179 ASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL- 237
AS FD A + K V+V+FYA WCG K +AP+ +K E++ D K+D V+EL
Sbjct: 14 ASEFDS-AIAQDKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQAD---FYKLD--VDELG 67
Query: 238 ---EHTKITSFPTLKLY--AKDDNRVIDYNGERVLEALS 271
+ ++++ PTL L+ K+ +V+ N + +A++
Sbjct: 68 DVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIA 106
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 193 VLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTK--ITSFPTLKL 250
VL +F+APWCG K +AP+ ++L ++ D+ + I KID N+ K + S PTL L
Sbjct: 20 VLADFWAPWCGPSKMIAPVLEELDQEMGDK--LKIVKIDVDENQETAGKYGVMSIPTL-L 76
Query: 251 YAKDDNRVIDYNGERVLEALSNFV 274
KD V G + EAL V
Sbjct: 77 VLKDGEVVETSVGFKPKEALQELV 100
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE 236
L +FD +LV+F+A WCG CK +API D++ +++ + +T+AK++ N
Sbjct: 17 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNIDQNP 74
Query: 237 LEHTK--ITSFPTLKLY 251
K I PTL L+
Sbjct: 75 GTAPKYGIRGIPTLLLF 91
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE 236
L +FD +LV+F+A WCG CK +API D++ +++ + +T+AK++ N
Sbjct: 7 LTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNIDQNP 64
Query: 237 LEHTK--ITSFPTLKLY 251
K I PTL L+
Sbjct: 65 GTAPKYGIRGIPTLLLF 81
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE 236
L +FD +LV+F+A WCG CK +API D++ +++ + +T+AK++ N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNIDQNP 64
Query: 237 LEHTK--ITSFPTLKLY 251
K I PTL L+
Sbjct: 65 GTAPKYGIRGIPTLLLF 81
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE 236
L +FD +LV+F+A WCG CK +API D++ +++ + +T+AK++ N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNIDQNP 64
Query: 237 LEHTK--ITSFPTLKLY 251
K I PTL L+
Sbjct: 65 GTAPKYGIRGIPTLLLF 81
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE 236
L +FD +LV+F+A WCG CK +API D++ +++ + +T+AK++ N
Sbjct: 7 LTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNIDQNP 64
Query: 237 LEHTK--ITSFPTLKLY 251
K I PTL L+
Sbjct: 65 GTAPKYGIRGIPTLLLF 81
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE 236
L +FD +LV+F+A WCG CK +API D++ +++ + +T+AK++ N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNIDQNP 64
Query: 237 LEHTK--ITSFPTLKLY 251
K I PTL L+
Sbjct: 65 GTAPKYGIRGIPTLLLF 81
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE 236
L +FD +LV+F+A WCG CK +API D++ +++ + +T+AK++ N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNIDQNP 64
Query: 237 LEHTK--ITSFPTLKLY 251
K I PTL L+
Sbjct: 65 GTAPKYGIRGIPTLLLF 81
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE 236
L +FD +LV+F+A WCG CK +API D++ +++ + +T+AK++ N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNIDQNP 64
Query: 237 LEHTK--ITSFPTLKLY 251
K I PTL L+
Sbjct: 65 GTAPKYGIRGIPTLLLF 81
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 181 NFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHT 240
+FD +LV+F+A WCG CK +API D++ +++ + +T+AK++ N
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNIDQNPGTAP 68
Query: 241 K--ITSFPTLKLY 251
K I PTL L+
Sbjct: 69 KYGIRGIPTLLLF 81
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE 236
L +FD +LV+F+A WCG CK +API D + +++ + +T+AK++ N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQGK--LTVAKLNIDQNP 64
Query: 237 LEHTK--ITSFPTLKLY 251
K I PTL L+
Sbjct: 65 GTAPKYGIRGIPTLLLF 81
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE 236
L +FD +LV+F+A WCG CK +API D++ + + + +T+AK++ N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQGK--LTVAKLNIDQNP 64
Query: 237 LEHTK--ITSFPTLKLY 251
K I PTL L+
Sbjct: 65 GTAPKYGIRGIPTLLLF 81
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE 236
L +FD +LV+F+A WCG CK +API D++ +++ + +T+AK++ N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNIDQNP 64
Query: 237 LEHTK--ITSFPTLKLY 251
K I PTL L+
Sbjct: 65 GTAPKYGIRGIPTLLLF 81
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 174 VKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDAT 233
V+V+ N+ E+ ++EFYAPWC C+ L P ++ E + + ++ IAK+D T
Sbjct: 9 VRVITDENWRELL---EGDWMIEFYAPWCPACQNLQPEWESFAE-WGEDLEVNIAKVDVT 64
Query: 234 VNELEHTK--ITSFPTLKLYAKDDNRVIDYNGERVLEALSNFV 274
+ I + PT +Y D Y G R + NF+
Sbjct: 65 EQPGLSGRFIINALPT--IYHCKDGEFRRYQGPRTKKDFINFI 105
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE 236
L +FD +LV+F+A WCG CK +API D++ +++ + +T+AK++ N
Sbjct: 8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNIDQNP 65
Query: 237 LEHTK--ITSFPTLKLY 251
K I PTL L+
Sbjct: 66 GTAPKYGIRGTPTLLLF 82
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE 236
L +FD +LV+F+A WCG C+ +API D++ +++ + +T+AK++ N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQGK--LTVAKLNIDQNP 64
Query: 237 LEHTK--ITSFPTLKLY 251
K I PTL L+
Sbjct: 65 GTAPKYGIRGIPTLLLF 81
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE 236
L +F+ +LV+F+A WCG CK +API D++ +++ + +T+AK++ N
Sbjct: 7 LTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNIDQNP 64
Query: 237 LEHTK--ITSFPTLKLY 251
K I PTL L+
Sbjct: 65 GTAPKYGIRGIPTLLLF 81
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE 236
L +FD +LV+F+A WCG CK +API +++ +++ + +T+AK++ N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQGK--LTVAKLNIDQNP 64
Query: 237 LEHTK--ITSFPTLKLY 251
K I PTL L+
Sbjct: 65 GTAPKYGIRGIPTLLLF 81
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKLY 251
LV+F+A WCG CK +AP+ ++L + + DI +D + ++ S PTL ++
Sbjct: 23 LVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVF 80
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKLYAK 253
LV+F+APWCG C+ ++PI ++L A R + +D + S PTL L+ +
Sbjct: 54 LVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRR 113
Query: 254 DDNRVIDYNG---ERVLE 268
V + G RVLE
Sbjct: 114 GAP-VATWVGASPRRVLE 130
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKLY 251
LV+F+A WCG CK +AP+ ++L + + DI +D + ++ S PTL ++
Sbjct: 24 LVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVF 81
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 180 SNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEH 239
S++ E + V+V+F+APWCG K +AP+ D+L ++++ + + D
Sbjct: 8 SSWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQ 67
Query: 240 TKITSFPTLKLYAKDDNRVIDYNGER 265
I S PT+ + NGER
Sbjct: 68 YNIRSIPTVLFFK---------NGER 84
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 188 DKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTK--ITSF 245
+K + ++V+F+A WCG C+ +AP + L ++ ++ AK+D NE K +T+
Sbjct: 17 NKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP---EVEFAKVDVDQNEEAAAKYSVTAM 73
Query: 246 PTLKLYAKDDNRVIDYNG 263
PT ++ KD V ++G
Sbjct: 74 PTF-VFIKDGKEVDRFSG 90
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 193 VLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE--LEHTKITSFPTLKL 250
+LV+F+APWCG C+Q+AP + A + + +AKID + +I P L
Sbjct: 67 LLVDFWAPWCGPCRQMAPQFQAAAATLAGQ--VRLAKIDTQAHPAVAGRHRIQGIPAFIL 124
Query: 251 YAKDDNRVIDYNGERVLEALSNFVES 276
+ K + G R L FV
Sbjct: 125 FHK-GRELARAAGARPASELVGFVRG 149
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKLY 251
LV+F+A WCG CK +AP+ ++L + + DI +D + ++ S PTL ++
Sbjct: 24 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVF 81
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE 236
L +FD +LV+F+A WCG CK +API D++ +++ + +T+AK++ N
Sbjct: 7 LTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNIDQNP 64
Query: 237 LEHTKIT--SFPTLKLY 251
K PTL L+
Sbjct: 65 GTAPKYIERGIPTLLLF 81
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE 236
L +FD +LV+F+A WCG K +API D++ +++ + +T+AK++ N
Sbjct: 27 LTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGK--LTVAKLNIDQNP 84
Query: 237 LEHTK--ITSFPTLKLY 251
K I PTL L+
Sbjct: 85 GTAPKYGIRGIPTLLLF 101
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGH-CKQLAPIYDKLGEKFADRDDITIAKIDATVN 235
L +FD +LV+F+A WCG CK +API D++ +++ + +T+AK++ N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEYQGK--LTVAKLNIDQN 64
Query: 236 ELEHTK--ITSFPTLKLY 251
K I PTL L+
Sbjct: 65 PGTAPKYGIRGIPTLLLF 82
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 181 NFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKID 231
N +E ++ K +V+FYA WCG CK +API D+L +++ + I I K+D
Sbjct: 29 NPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQ--IVIYKVD 77
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE 236
L +FD +LV+F+A WC CK +API D++ +++ + +T+AK++ N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQGK--LTVAKLNIDQNP 64
Query: 237 LEHTK--ITSFPTLKLY 251
K I PTL L+
Sbjct: 65 GTAPKYGIRGIPTLLLF 81
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE 236
L +FD +LV+F+A WCG K +API D++ +++ + +T+AK++ N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQGK--LTVAKLNIDQNP 64
Query: 237 LEHTK--ITSFPTLKLY 251
K I PTL L+
Sbjct: 65 GTAPKYGIRGIPTLLLF 81
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 173 AVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDA 232
V + + F+ + VLV F+A WCG C+ ++P+ + ++DR + +ID
Sbjct: 8 GVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDP 67
Query: 233 TVNELEHTKITSFPTLKL 250
++ K+ P L+L
Sbjct: 68 NPTTVKKYKVEGVPALRL 85
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE 236
L +FD +LV+F+A WCG CK +A I D++ +++ + +T+AK++ N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQGK--LTVAKLNIDQNP 64
Query: 237 LEHTK--ITSFPTLKLY 251
K I PTL L+
Sbjct: 65 GTAPKYGIRGIPTLLLF 81
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 9/78 (11%)
Query: 190 SKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHT----KITSF 245
K V+++F+A WCG CK ++P +L +FA D++ + K+D V+E E I+S
Sbjct: 25 GKLVVLDFFATWCGPCKMISPKLVELSTQFA--DNVVVLKVD--VDECEDIAMEYNISSM 80
Query: 246 PTLKLYAKDDNRVIDYNG 263
PT ++ K+ +V ++ G
Sbjct: 81 PTF-VFLKNGVKVEEFAG 97
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 180 SNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE--L 237
NFDE + VLV+F+A WC C+ +API +++ +++ + + +AK+D N
Sbjct: 10 QNFDE-TLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGK--LLVAKLDVDENPKTA 66
Query: 238 EHTKITSFPTLKLY 251
++ S PT+ L+
Sbjct: 67 XRYRVXSIPTVILF 80
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 180 SNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE--L 237
NFDE + VLV+F+A WC C+ +API +++ +++ + + +AK+D N
Sbjct: 9 QNFDE-TLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGK--LLVAKLDVDENPKTA 65
Query: 238 EHTKITSFPTLKLY 251
++ S PT+ L+
Sbjct: 66 XRYRVXSIPTVILF 79
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 9/78 (11%)
Query: 190 SKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHT----KITSF 245
K V+++F+A WCG CK ++P +L +FA D++ + K+D V+E E I+S
Sbjct: 20 GKLVVLDFFATWCGPCKMISPKLVELSTQFA--DNVVVLKVD--VDECEDIAMEYNISSM 75
Query: 246 PTLKLYAKDDNRVIDYNG 263
PT ++ K+ +V ++ G
Sbjct: 76 PTF-VFLKNGVKVEEFAG 92
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 191 KHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTL 248
K +V+FYA WCG CK +API ++L +++A + I +D I S PT+
Sbjct: 52 KPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTI 109
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 191 KHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKL 250
K V+V+F A WCG CK + P + L EK+++ + + +D + +++ S PT +
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEV-DVDDCQDVASESEVKSMPTFQF 79
Query: 251 YAKDDNRVIDYNG--ERVLEALSN 272
+ K +V +++G + LEA N
Sbjct: 80 F-KKGQKVGEFSGANKEKLEATIN 102
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 10/78 (12%)
Query: 190 SKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELE----HTKITSF 245
+K V+++FYA WCG CK +AP ++L + + D+ K+D V+E E +I
Sbjct: 20 NKLVVIDFYATWCGPCKMIAPKLEELSQSMS---DVVFLKVD--VDECEDIAQDNQIACM 74
Query: 246 PTLKLYAKDDNRVIDYNG 263
PT L+ K+ ++ +G
Sbjct: 75 PTF-LFMKNGQKLDSLSG 91
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 191 KHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKL 250
K V+V+F A WCG CK + P + L EK+++ + + +D + ++ S PT +
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEV-DVDDCQDVASECEVKSMPTFQF 79
Query: 251 YAKDDNRVIDYNG--ERVLEALSN 272
+ K +V +++G + LEA N
Sbjct: 80 F-KKGQKVGEFSGANKEKLEATIN 102
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE 236
L +FD +LV+F+A WC K +API D++ +++ + +T+AK++ N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEYQGK--LTVAKLNIDQNP 64
Query: 237 LEHTK--ITSFPTLKLY 251
K I PTL L+
Sbjct: 65 GTAPKYGIRGIPTLLLF 81
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKLY 251
LV+F+A WCG K +AP+ ++L + + DI +D + ++ S PTL ++
Sbjct: 24 LVDFWATWCGTSKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVF 81
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 191 KHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTL 248
K +V+FYA WCG CK +API ++L +++A + I +D I PT+
Sbjct: 52 KPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQGIPTI 109
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 176 VLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADR 222
VL NFDE+ +K VLV+ +A WC C PIY K+ EK+ +
Sbjct: 8 VLTEENFDEV-IRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGK 53
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 193 VLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDA--TVNELEHTKITSFPTLKL 250
VLV+F+A WCG C++L I + E D+T K+D N + ++S P L
Sbjct: 26 VLVDFFATWCGPCQRLGQILPSIAEA---NKDVTFIKVDVDKNGNAADAYGVSSIPALFF 82
Query: 251 YAKDDNRV 258
K+ N +
Sbjct: 83 VKKEGNEI 90
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 171 KNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKI 230
K VK L + NFDE K+K V+V+F+A WC C LAP+ ++L D + K+
Sbjct: 5 KEPVKHLNSKNFDEF-ITKNKIVVVDFWAEWCAPCLILAPVIEELAN---DYPQVAFGKL 60
Query: 231 DATVNE--LEHTKITSFPTLKLY 251
+ ++ I S PT+ +
Sbjct: 61 NTEESQDIAMRYGIMSLPTIMFF 83
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKLY 251
+++F+APWCG C+ API+ + + A + +A +I S PT+ LY
Sbjct: 59 VIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIXLY 116
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 188 DKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL----EHTKIT 243
D K V+++F A WCG C+ +AP++ + +KF K+D V+EL E +
Sbjct: 26 DTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGA---IFLKVD--VDELKDVAEAYNVE 80
Query: 244 SFPTLKLYAKDDNRVIDYNGER 265
+ PT L+ KD +V G R
Sbjct: 81 AMPTF-LFIKDGEKVDSVVGGR 101
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 195 VEFYAPWCGHCKQLAPIYDKLGEKF-ADRDDITIAKIDATVNE----LEHTKITSFPTLK 249
VEF+A WCGHC AP + L E A R + +A +D I FPT++
Sbjct: 35 VEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPTVR 94
Query: 250 LY 251
+
Sbjct: 95 FF 96
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 176 VLVASNFDEI--AFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDAT 233
V V S++D+ K V+++F+A WCG CK + P+++K+ + A D + K+D
Sbjct: 17 VQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAG-DKVGFYKVD-- 73
Query: 234 VNE----LEHTKITSFPTLKLY 251
V+E + I + PT +
Sbjct: 74 VDEQSQIAQEVGIRAMPTFVFF 95
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 191 KHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKL 250
K V+V+F A WCG CK + P + L EK+++ + + +D + ++ PT +
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEV-DVDDCQDVASECEVKCMPTFQF 79
Query: 251 YAKDDNRVIDYNG--ERVLEALSN 272
+ K +V +++G + LEA N
Sbjct: 80 F-KKGQKVGEFSGANKEKLEATIN 102
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 12/88 (13%)
Query: 191 KHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELE----HTKITSFP 246
K V+V+F A WCG CK + P + L EK+++ + ++ VN+ + ++ P
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-----VIFLEVDVNDCQDVASECEVKCMP 75
Query: 247 TLKLYAKDDNRVIDYNG--ERVLEALSN 272
T + + K +V +++G + LEA N
Sbjct: 76 TFQFF-KKGQKVGEFSGANKEKLEATIN 102
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 191 KHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKL 250
K V+V+F A WCG CK + P + L EK+++ + + +D + ++ + PT +
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEV-DVDDAQDVASEAEVKATPTFQF 79
Query: 251 YAKDDNRVIDYNG--ERVLEALSN 272
+ K +V +++G + LEA N
Sbjct: 80 F-KKGQKVGEFSGANKEKLEATIN 102
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATV-- 234
L F+E H +V+FYAPW G + AP ++ L + + K+D
Sbjct: 662 LTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMI--KGKVRAGKVDCQAYP 719
Query: 235 NELEHTKITSFPTLKLY 251
+ I ++P++KLY
Sbjct: 720 QTCQKAGIKAYPSVKLY 736
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 184 EIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDD--ITIAKIDATVNEL--EH 239
+ A + + V FY+P H LAP + +FA D + I ++ + +
Sbjct: 127 DAAVNSGELWFVNFYSPGSSHSHDLAPTW----REFAKEVDGLLRIGAVNCGDDRMLCRM 182
Query: 240 TKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFV 274
+ S+P+L ++ + + YNG+R E+L F
Sbjct: 183 KGVNSYPSLFIF-RSGMAAVKYNGDRSKESLVAFA 216
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 167 EDWDKNAVKVLVASNFDEIAFDKSKH---VLVEFYAPWCGHCKQLAPIYDKLGEKFADRD 223
ED +V L S F+E+ + KH +V+FY+PW + L P + ++
Sbjct: 538 EDLRNPSVVSLTPSTFNELV-KQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLI 596
Query: 224 DITIAKIDATVNELEHTKITSFPTLKLYAKDDNRVIDYN 262
++ + + +P ++ Y + ++ Y+
Sbjct: 597 NVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYH 635
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE--LEHTKITSFPTLKLY 251
LV+F+APW + L P K + + + +D T++E I ++PT ++
Sbjct: 459 LVDFFAPWSPPSRALLPELRKASTLLYGQ--LKVGTLDCTIHEGLCNMYNIQAYPTTVVF 516
Query: 252 AKDDNRVIDYNGERVLEALSNFVE 275
+ + + +Y G E + F+E
Sbjct: 517 --NQSSIHEYEGHHSAEQILEFIE 538
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 191 KHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKL 250
K V+V+F A WCG CK + P + L EK+++ + + +D + ++ PT +
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEV-DVDDCQDVASEXEVKCMPTFQF 79
Query: 251 YAKDDNRVIDYNG--ERVLEALSN 272
+ K +V +++G + LEA N
Sbjct: 80 F-KKGQKVGEFSGANKEKLEATIN 102
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 184 EIAFDKSKH--VLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTK 241
++A K +H ++V+F A WCG CK +AP+++ L +A + +DA E
Sbjct: 16 QLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAG 75
Query: 242 ITSFPTLKLYAKDDNRVIDYNG 263
IT+ PT +Y KD + D G
Sbjct: 76 ITAMPTFHVY-KDGVKADDLVG 96
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKLY 251
LV+F+A CG CK +AP+ ++L + + DI +D + ++ S PTL ++
Sbjct: 23 LVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVF 80
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 191 KHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTK---ITSFPT 247
K V+++ + WCG CK +AP Y+KL E++ D+ K+D K I PT
Sbjct: 26 KPVVLDMFTQWCGPCKAMAPKYEKLAEEYL---DVIFLKLDCNQENKTLAKELGIRVVPT 82
Query: 248 LKLYAKDDNRVIDYNG---ERVLEALS 271
K+ K+++ V + G +++LEA+
Sbjct: 83 FKIL-KENSVVGEVTGAKYDKLLEAIQ 108
>pdb|4F9Z|D Chain D, Crystal Structure Of Human Erp27
pdb|4F9Z|A Chain A, Crystal Structure Of Human Erp27
pdb|4F9Z|B Chain B, Crystal Structure Of Human Erp27
pdb|4F9Z|C Chain C, Crystal Structure Of Human Erp27
pdb|4F9Z|E Chain E, Crystal Structure Of Human Erp27
Length = 227
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 7/106 (6%)
Query: 50 FKKNLYIHLEEDMAKYKPASPEINVDTVR-SFVTEFLAGNLKVLFVTINTDEEDHQKILE 108
F + IHL M K ASPE + R + G K+LF+ +++ +++ K++
Sbjct: 127 FNSVIQIHLLLIMNK---ASPEYEENMHRYQKAAKLFQG--KILFILVDSGMKENGKVIS 181
Query: 109 FFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFLAG 154
FF + + ++P+L + + +D P T E+SV+ V++F FL+G
Sbjct: 182 FFKLKESQLPALAIYQTLDDEWDTLP-TAEVSVEHVQNFCDGFLSG 226
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 191 KHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTK---ITSFPT 247
K V+++ + WCG CK +AP Y+KL E++ D+ K+D K I PT
Sbjct: 38 KPVVLDMFTQWCGPCKAMAPKYEKLAEEYL---DVIFLKLDCNQENKTLAKELGIRVVPT 94
Query: 248 LKLYAKDDNRVIDYNG---ERVLEALS 271
K+ K+++ V + G +++LEA+
Sbjct: 95 FKIL-KENSVVGEVTGAKYDKLLEAIQ 120
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 184 EIAFDKSKH--VLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTK 241
++A K +H ++V F A WCG CK +AP+++ L +A + +DA E
Sbjct: 16 QLAKGKEEHKPIVVAFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAG 75
Query: 242 ITSFPTLKLYAKDDNRVIDYNG 263
IT+ PT +Y KD + D G
Sbjct: 76 ITAMPTFHVY-KDGVKADDLVG 96
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 10/72 (13%)
Query: 191 KHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL----EHTKITSFP 246
K ++V+F A WC CK +API+ +L +KF ++T K+D V+EL E + + P
Sbjct: 27 KLIVVDFTASWCPPCKMIAPIFAELAKKFP---NVTFLKVD--VDELKAVAEEWNVEAMP 81
Query: 247 TLKLYAKDDNRV 258
T ++ KD V
Sbjct: 82 TF-IFLKDGKLV 92
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 191 KHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKL 250
K V+V+F A WCG K + P + L EK+++ + + +D + + +++ S PT +
Sbjct: 21 KLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEV-DVDDSQDVASESEVKSMPTFQF 79
Query: 251 YAKDDNRVIDYNG--ERVLEALSN 272
+ K +V +++G + LEA N
Sbjct: 80 FKK-GQKVGEFSGANKEKLEATIN 102
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 18/91 (19%)
Query: 177 LVASNFDEIAFDKSKHVLVEFYAPWCGH--------------CKQLAPIYDKLGEKFADR 222
L +FD +LV+F+A WCG CK +API D++ +++ +
Sbjct: 8 LTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGK 67
Query: 223 DDITIAKIDATVNELEHTK--ITSFPTLKLY 251
+T+AK++ N K I PTL L+
Sbjct: 68 --LTVAKLNIDQNPGTAPKYGIRGIPTLLLF 96
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 191 KHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKL 250
K V+V+F A WCG CK + P + L EK+++ + + +D + ++ PT +
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEV-DVDDCQDVASECEVKCTPTFQF 79
Query: 251 YAKDDNRVIDYNG--ERVLEALSN 272
+ K +V +++G + LEA N
Sbjct: 80 F-KKGQKVGEFSGANKEKLEATIN 102
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 184 EIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDD--ITIAKIDATVNEL--EH 239
+ A + + V FY+P C HC LAP + +FA D + I ++ + +
Sbjct: 108 DAAVNSGELWFVNFYSPGCSHCHDLAPTW----REFAKEVDGLLRIGAVNCGDDRMLCRM 163
Query: 240 TKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFV 274
+ S+P+L ++ + + YNG+R E+L F
Sbjct: 164 KGVNSYPSLFIF-RSGMAAVKYNGDRSKESLVAFA 197
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 18/102 (17%)
Query: 191 KHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL----EHTKITSFP 246
K V+++F A WCG C+ +AP++ L +KF + K+D V+EL E + + P
Sbjct: 35 KLVVIDFTASWCGPCRIMAPVFADLAKKFPNA---VFLKVD--VDELKPIAEQFSVEAMP 89
Query: 247 TLKLYAKDDNRVIDYNGERVLEALSNFVESGGKEGGLPSGAQ 288
T + D + +RV+ A+ E + GL + AQ
Sbjct: 90 TFLFMKEGDVK------DRVVGAIK---EELTAKVGLHAAAQ 122
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 191 KHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKL 250
K V+V+F A WCG K + P + L EK+++ + + +D + ++ S PT +
Sbjct: 32 KLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEV-DVDDCQDVASECEVKSMPTFQF 90
Query: 251 YAKDDNRVIDYNG--ERVLEALSN 272
+ K +V +++G + LEA N
Sbjct: 91 F-KKGQKVGEFSGANKEKLEATIN 113
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 191 KHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKL 250
K V+V+F A WCG CK + P + L EK+++ + + +D + I PTL L
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEV-DVDDAQDVAPKYGIRGIPTLLL 79
Query: 251 Y 251
+
Sbjct: 80 F 80
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 179 ASNFDEIAFDKSKHVLV-EFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDA-TVNE 236
A F+E+ K+K +LV F+APW C Q+ + +L ++ ++ K++A V E
Sbjct: 20 AGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL---PQVSFVKLEAEGVPE 76
Query: 237 L-EHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVESGGKEGG-LPSG 286
+ E +I+S PT L+ K+ ++ +G E L+ V+ G LPS
Sbjct: 77 VSEKYEISSVPTF-LFFKNSQKIDRLDGAHAPE-LTKKVQRHASSGSFLPSA 126
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 14/70 (20%)
Query: 150 EFLAGNLKQHLLSQPLPEDWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLA 209
E GN+ HL++ E WD+ K+ AS K VL F A WCG CKQ+A
Sbjct: 20 ELAGGNV--HLITTK--ERWDQ---KLSEASR-------DGKIVLANFSARWCGPCKQIA 65
Query: 210 PIYDKLGEKF 219
P Y +L E +
Sbjct: 66 PYYIELSENY 75
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 191 KHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKL 250
K V+V+F A WCG CK + P + L EK+++ + + D E ++ PT +
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDXQDVASE-XEVKCMPTFQF 79
Query: 251 YAKDDNRVIDYNG--ERVLEALSN 272
+ K +V +++G + LEA N
Sbjct: 80 F-KKGQKVGEFSGANKEKLEATIN 102
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 16/100 (16%)
Query: 176 VLVASNFDEI------AFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAK 229
V+ N DE A + K V+++F A WCG C+ +AP++ + +KF K
Sbjct: 16 VIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGA---VFLK 72
Query: 230 IDATVNEL----EHTKITSFPTLKLYAKDDNRVIDYNGER 265
+D V+EL E + + PT L+ KD G R
Sbjct: 73 VD--VDELKEVAEKYNVEAMPTF-LFIKDGAEADKVVGAR 109
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 174 VKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFAD-RDDITIAKIDA 232
+ +L A + S VEF+A WCGH AP + +L D R + +A +D
Sbjct: 14 LTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDC 73
Query: 233 TVNE----LEHTKITSFPTLKLY 251
I FPT++ +
Sbjct: 74 AEETNSAVCREFNIAGFPTVRFF 96
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 191 KHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKL 250
K V+V+F A WCG K + P + L EK+++ + + +D + ++ + PT +
Sbjct: 21 KLVVVDFSATWCGPAKMIKPFFHSLSEKYSNVIFLEV-DVDDAQDVASEAEVKATPTFQF 79
Query: 251 YAKDDNRVIDYNG--ERVLEALSN 272
+ K +V +++G + LEA N
Sbjct: 80 F-KKGQKVGEFSGANKEKLEATIN 102
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 179 ASNFDEIAFDKSKHVLV-EFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDA-TVNE 236
A F+E+ K+K +LV F+APW C Q+ + +L ++ ++ K++A V E
Sbjct: 26 AGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL---PQVSFVKLEAEGVPE 82
Query: 237 L-EHTKITSFPTLKLYAKDDNRVIDYNGERVLE 268
+ E +I+S PT L+ K+ ++ +G E
Sbjct: 83 VSEKYEISSVPTF-LFFKNSQKIDRLDGAHAPE 114
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 193 VLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKL 250
++++FYA WCG CK + P KL + + D + +D + + + ++T+ PT L
Sbjct: 33 LVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVK-CDVDESPDIAKECEVTAMPTFVL 89
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIA 228
+ K VLV F+A WC +C+ P D+L + F D + +A
Sbjct: 40 RGKIVLVNFWASWCPYCRDEXPSXDRLVKSFPKGDLVVLA 79
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 191 KHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKL 250
K V+V+F A WCG K + P + L EK+++ + + +D + ++ PT +
Sbjct: 21 KLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEV-DVDDCQDVASECEVKRMPTFQF 79
Query: 251 YAKDDNRVIDYNG--ERVLEALSN 272
+ K +V +++G + LEA N
Sbjct: 80 F-KKGQKVGEFSGANKEKLEATIN 102
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 10/87 (11%)
Query: 191 KHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTK---ITSFPT 247
K V+++ + WCG K +AP Y+KL E++ D+ K+D K I PT
Sbjct: 25 KPVVLDMFTQWCGPSKAMAPKYEKLAEEYL---DVIFLKLDCNQENKTLAKELGIRVVPT 81
Query: 248 LKLYAKDDNRVIDYNG---ERVLEALS 271
K+ K+++ V + G +++LEA+
Sbjct: 82 FKIL-KENSVVGEVTGAKYDKLLEAIQ 107
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRD 223
K K++ ++ +A WCG C+ P +L EK+A +D
Sbjct: 29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGKD 63
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 181 NFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHT 240
+F + + V+V+F+A WCG CK L P +K+ K + + +AK+D +HT
Sbjct: 22 DFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGK--VVMAKVDID----DHT 75
Query: 241 ------KITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVE 275
++++ PT+ L K+ + V + G + + L F++
Sbjct: 76 DLAIEYEVSAVPTV-LAMKNGDVVDKFVGIKDEDQLEAFLK 115
>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Related Transmembrane Protein 2
Length = 137
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 183 DEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKID 231
+E+ DK +VEF+A W C+ APIY L K+ + + K+D
Sbjct: 19 EELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKY-NCTGLNFGKVD 66
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 11/75 (14%)
Query: 191 KHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL----EHTKITSFP 246
K V+++F A WCG + +AP++ L +KF + K+D V+EL E + + P
Sbjct: 38 KLVVIDFTASWCGPSRIMAPVFADLAKKFPNA---VFLKVD--VDELKPIAEQFSVEAMP 92
Query: 247 TLKLYAKDD--NRVI 259
T + D +RV+
Sbjct: 93 TFLFMKEGDVKDRVV 107
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 193 VLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE--LEHTKITSFPTLKL 250
+++ F WC CK++ P ++++ + DI A +DA E + I + P+L L
Sbjct: 20 IIIMFTGSWCQPCKKMKPTFEEMASQM--EGDIRFAYMDAEDAEKTMAELNIRTLPSLAL 77
Query: 251 Y 251
+
Sbjct: 78 F 78
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 177 LVASNFDEIAFDKSKHV-LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVN 235
L + NFD +F S + +V+F+A WC C LAPI ++L E D + K+++ N
Sbjct: 4 LDSKNFD--SFLASHEIAVVDFWAEWCAPCLILAPIIEELAE---DYPQVGFGKLNSDEN 58
Query: 236 E--LEHTKITSFPTLKLYAKDDNRV 258
+ S PT+ ++ KD V
Sbjct: 59 PDIAARYGVMSLPTV-IFFKDGEPV 82
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 14/70 (20%)
Query: 150 EFLAGNLKQHLLSQPLPEDWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLA 209
E GN+ HL++ E WD+ K+ AS K VL F A WCG +Q+A
Sbjct: 20 ELAGGNV--HLITTK--ERWDQ---KLSEASR-------DGKIVLANFSARWCGPSRQIA 65
Query: 210 PIYDKLGEKF 219
P Y +L E +
Sbjct: 66 PYYIELSENY 75
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 34.3 bits (77), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 188 DKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSF 245
D K V+V FY+P C +CK P +++ +++ +I+ N E +
Sbjct: 22 DSKKPVVVXFYSPACPYCKAXEPYFEEYAKEYG--SSAVFGRINIATNPWTAEKYGVQGT 79
Query: 246 PTLKLYA 252
PT K +
Sbjct: 80 PTFKFFC 86
>pdb|3EC3|A Chain A, Crystal Structure Of The Bb Fragment Of Erp72
pdb|3EC3|B Chain B, Crystal Structure Of The Bb Fragment Of Erp72
Length = 250
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 98 TDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFLAGNLK 157
DEED+ ++ G+S + + L+E K+ E D +R FV F G LK
Sbjct: 174 ADEEDYATEVKDLGLS-ESGGDVNAAILDESGKKFAXEPEEFDSDALREFVXAFKKGKLK 232
Query: 158 QHLLSQPLPED 168
+ SQP+P++
Sbjct: 233 PVIKSQPVPKN 243
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 34.3 bits (77), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 193 VLVEFYAPWCGHCKQLAPIYDKLGEKF 219
V+V+F A WCG C+ +AP + L +K
Sbjct: 41 VVVDFTASWCGPCRFIAPFFADLAKKL 67
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDK-LGEKFADRDDITIAKID 231
+ K V+++F A WCG C++ P +K + K D D + ID
Sbjct: 32 RGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGID 75
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 191 KHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKL 250
K V+V+F A W G K + P + L EK+++ + + +D + ++ PT +
Sbjct: 21 KLVVVDFSATWSGPSKMIKPFFHSLSEKYSNVIFLEV-DVDDCQDVASECEVKCMPTFQF 79
Query: 251 YAKDDNRVIDYNG--ERVLEALSN 272
+ K +V +++G + LEA N
Sbjct: 80 F-KKGQKVGEFSGANKEKLEATIN 102
>pdb|2DJK|A Chain A, Solution Structure Of The B' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP2|A Chain A, Solution Structure Of The B' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 133
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 23/30 (76%)
Query: 138 EISVDTVRSFVTEFLAGNLKQHLLSQPLPE 167
EI+ + +++FV +F+AG ++ + S+P+PE
Sbjct: 100 EITFEAIKAFVDDFVAGKIEPSIKSEPIPE 129
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTK--ITSFP 246
K+ +++ F+A WC C + DKL + + R I + K+D NE K + S P
Sbjct: 41 KNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKR--IYLLKVDLDKNESLARKFSVKSLP 98
Query: 247 TLKL 250
T+ L
Sbjct: 99 TIIL 102
>pdb|3IOS|A Chain A, Structure Of Mtb Dsbf In Its Mixed Oxidized And Reduced
Forms
Length = 150
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 190 SKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKID 231
K ++ F+APWC C+ AP+ ++ + + +A +D
Sbjct: 39 GKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLD 80
>pdb|1ZZO|A Chain A, Structure Of Mtb Dsbf In Its Oxidized Form
Length = 136
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 190 SKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKID 231
K ++ F+APWC C+ AP+ ++ + + +A +D
Sbjct: 25 GKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLD 66
>pdb|1N8Y|C Chain C, Crystal Structure Of The Extracellular Region Of Rat Her2
Length = 608
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 61 DMAKYKPASPEINVDTVRSFV--TEFLAGNLKVLFVTINTD---EEDHQKILEFFGMSKD 115
DM PASPE ++D +R + + GNL++ +V N +D Q++ + ++ +
Sbjct: 8 DMKLRLPASPETHLDMLRHLYQGCQVVQGNLELTYVPANASLSFLQDIQEVQGYMLIAHN 67
Query: 116 EVPSLRLIRL 125
+V + L RL
Sbjct: 68 QVKRVPLQRL 77
>pdb|3HA9|A Chain A, The 1.7a Crystal Structure Of A Thioredoxin-like Protein
From Aeropyrum Pernix
Length = 165
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 193 VLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKID 231
V++ F A WC C +A + D+L EK+ +I++ ID
Sbjct: 40 VILWFMAAWCPSCVYMADLLDRLTEKYR---EISVIAID 75
>pdb|3AKJ|A Chain A, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKJ|B Chain B, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKK|A Chain A, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKK|B Chain B, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKK|C Chain C, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKK|D Chain D, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKL|A Chain A, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKL|B Chain B, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKL|C Chain C, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKL|D Chain D, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
Length = 325
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 11/72 (15%)
Query: 207 QLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKLYAKDDN-RVIDY---- 261
Q+API+D + DD+ K+ + ++EL + +I +FP L KDDN + I+Y
Sbjct: 173 QIAPIFDCGSCLYPQADDVVCQKVLSNIDEL-NARIYNFPQSIL--KDDNDKKINYYDFL 229
Query: 262 ---NGERVLEAL 270
N + L+AL
Sbjct: 230 TQTNNKDCLDAL 241
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 188 DKSKHVL-VEFYAPWCGHCKQLAPIYDKLGEKFADRD-DITIAKIDATVNE 236
DK+ V+ ++F+A WCG C+Q P ++ K+ + + +DA +
Sbjct: 25 DKTGSVVYLDFWASWCGPCRQSFPWXNQXQAKYKAKGFQVVAVNLDAKTGD 75
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAP 210
K K V + F+ WC HCK+ P
Sbjct: 25 KGKGVFLNFWGTWCPHCKKEFP 46
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAP 210
K K V + F+ WC HCK+ P
Sbjct: 22 KGKGVFLNFWGTWCEHCKKEFP 43
>pdb|2H8L|A Chain A, Crystal Structure Of The Bb' Fragment Of Erp57
pdb|2H8L|B Chain B, Crystal Structure Of The Bb' Fragment Of Erp57
pdb|2H8L|C Chain C, Crystal Structure Of The Bb' Fragment Of Erp57
Length = 252
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 147 FVTEFLAGNLKQHLLSQPLPEDWDKNAV 174
F+ ++ GNLK++L S+P+PE D A
Sbjct: 224 FLQDYFDGNLKRYLKSEPIPESNDGAAA 251
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 193 VLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTK--ITSFPTLKL 250
VL F++ HC QL PI + L ++ +AK+D ++ + + + PT+ L
Sbjct: 29 VLFYFWSERSQHCLQLTPILESLAAQY--NGQFILAKLDCDAEQMIAAQFGLRAIPTVYL 86
Query: 251 YAKDDNRVIDYNGERVLEALSNFVE 275
+ ++ V + G + EA+ ++
Sbjct: 87 F-QNGQPVDGFQGPQPEEAIRALLD 110
>pdb|1KNG|A Chain A, Crystal Structure Of Ccmg Reducing Oxidoreductase At 1.14
A
Length = 156
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 181 NFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGE 217
D AF K K LV +A WC C AP+ +LG+
Sbjct: 34 GLDPAAF-KGKVSLVNVWASWCVPCHDEAPLLTELGK 69
>pdb|3NIX|A Chain A, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|B Chain B, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|C Chain C, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|D Chain D, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|E Chain E, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|F Chain F, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|G Chain G, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|H Chain H, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43
Length = 421
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 49 KFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKIL 107
+F K ++ E+D ++ +DT RSFVT + G L +F N D DH++ +
Sbjct: 324 QFLKGEEVNWEKDFVEHXXQG----IDTFRSFVTGWYDGTLHAVFFAKNPD-PDHKRXI 377
>pdb|1XPJ|A Chain A, Crystal Structure Of Mcsg Target Apc26283 From Vibrio
Cholerae
pdb|1XPJ|B Chain B, Crystal Structure Of Mcsg Target Apc26283 From Vibrio
Cholerae
pdb|1XPJ|C Chain C, Crystal Structure Of Mcsg Target Apc26283 From Vibrio
Cholerae
pdb|1XPJ|D Chain D, Crystal Structure Of Mcsg Target Apc26283 From Vibrio
Cholerae
Length = 126
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 23/93 (24%)
Query: 114 KDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVT-EFLAGNLKQHLLSQPLPEDW-DK 171
++ +P L +I E + +Y EI + T R+ T E G + H L P+ +W DK
Sbjct: 21 RNVLPRLDVI---EQLREYHQLGFEIVISTARNMRTYEGNVGKINIHTL--PIITEWLDK 75
Query: 172 NAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGH 204
+ V +DEI K PWCGH
Sbjct: 76 HQVP------YDEILVGK----------PWCGH 92
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFA 220
+ K +LV +A WC C++ P D+L K +
Sbjct: 59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLS 90
>pdb|3OR5|A Chain A, Crystal Structure Of Thiol:disulfide Interchange Protein,
Thioredoxin Family Protein From Chlorobium Tepidum Tls
Length = 165
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 12/91 (13%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTL 248
K K +V F+A WC C+ P ++ + +A R + VNE P +
Sbjct: 33 KGKAYIVNFFATWCPPCRSEIPDXVQVQKTWASRG---FTFVGIAVNE-------QLPNV 82
Query: 249 KLYAKDDNRV--IDYNGERVLEALSNFVESG 277
K Y K + + ++ A + +++ G
Sbjct: 83 KNYXKTQGIIYPVXXATPELIRAFNGYIDGG 113
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 197 FYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE--LEHTKITSFPTL 248
F A WCG CK + +K+ +F + AK+DA N + ++ PT
Sbjct: 44 FTAVWCGPCKTIERPMEKIAYEFP---TVKFAKVDADNNSEIVSKCRVLQLPTF 94
>pdb|3A3T|A Chain A, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|B Chain B, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|C Chain C, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|D Chain D, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|E Chain E, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|F Chain F, The Oxidoreductase Nmdsba1 From N. Meningitidis
Length = 210
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 194 LVEFYAPWCGHCKQLAPIYDKLGEKFAD 221
++EF+ +C HC L P+ K + F D
Sbjct: 45 VLEFFGYFCPHCAHLEPVLSKHAKSFKD 72
>pdb|1LT7|A Chain A, Oxidized Homo Sapiens Betaine-Homocysteine
S-Methyltransferase In Complex With Four Sm(Iii) Ions
pdb|1LT7|B Chain B, Oxidized Homo Sapiens Betaine-Homocysteine
S-Methyltransferase In Complex With Four Sm(Iii) Ions
pdb|1LT8|A Chain A, Reduced Homo Sapiens Betaine-Homocysteine S-
Methyltransferase In Complex With
S-(Delta-Carboxybutyl)-L- Homocysteine
pdb|1LT8|B Chain B, Reduced Homo Sapiens Betaine-Homocysteine S-
Methyltransferase In Complex With
S-(Delta-Carboxybutyl)-L- Homocysteine
Length = 406
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 137 PEISVDTVRSFVTEFLAGNLKQHLLSQPL 165
P IS+ TV+ A LK HL+SQPL
Sbjct: 221 PTISLKTVKLMKEGLEAAQLKAHLMSQPL 249
>pdb|3DVW|A Chain A, Crystal Structure Of Reduced Dsba1 From Neisseria
Meningitidis
Length = 193
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 194 LVEFYAPWCGHCKQLAPIYDKLGEKFAD 221
++EF+ +C HC L P+ K + F D
Sbjct: 28 VLEFFGYFCPHCAHLEPVLSKHAKSFKD 55
>pdb|3HZ8|A Chain A, Crystal Structure Of The Oxidized T176v Dsba1 Mutant
Length = 193
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 194 LVEFYAPWCGHCKQLAPIYDKLGEKFAD 221
++EF+ +C HC L P+ K + F D
Sbjct: 28 VLEFFGYFCPHCAHLEPVLSKHAKSFKD 55
>pdb|1UC7|A Chain A, Crystal Structure Of Dsbdgamma
pdb|1UC7|B Chain B, Crystal Structure Of Dsbdgamma
Length = 125
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 22/77 (28%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRD--------DITIAKIDATVNE---- 236
K K V+++ YA WC CK+ EK+ D D + + + T N+
Sbjct: 27 KGKPVMLDLYADWCVACKEF--------EKYTFSDPQVQKALADTVLLQANVTANDAQDV 78
Query: 237 --LEHTKITSFPTLKLY 251
L+H + PT+ +
Sbjct: 79 ALLKHLNVLGLPTILFF 95
>pdb|3KCM|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|B Chain B, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|C Chain C, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|D Chain D, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|E Chain E, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|F Chain F, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 154
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADR 222
K + V+V F+A WC C++ P +L A +
Sbjct: 27 KGQVVIVNFWATWCPPCREEIPSXXRLNAAXAGK 60
>pdb|2DKZ|A Chain A, Solution Structure Of The Sam_pnt-Domain Of The
Hypothetical Protein Loc64762
Length = 84
Score = 28.9 bits (63), Expect = 3.4, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 15/67 (22%)
Query: 111 GMSKDEVP-SLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFLAGNLKQHLLSQPLPEDW 169
G+S +EV SLR I L ED+ + FVTE + GNL L + L ED+
Sbjct: 17 GLSIEEVSKSLRFIGLSEDVISF--------------FVTEKIDGNLLVQLTEEILSEDF 62
Query: 170 DKNAVKV 176
+ ++V
Sbjct: 63 KLSKLQV 69
>pdb|2FWE|A Chain A, Crystal Structure Of The C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd (Oxidized Form)
pdb|2FWF|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Reduced Form)
pdb|2FWG|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Photoreduced
Form)
pdb|2FWH|A Chain A, Atomic Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form At Ph7)
Length = 134
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 22/77 (28%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRD--------DITIAKIDATVNE---- 236
K K V+++ YA WC CK+ EK+ D D + + + T N+
Sbjct: 30 KGKPVMLDLYADWCVACKEF--------EKYTFSDPQVQKALADTVLLQANVTANDAQDV 81
Query: 237 --LEHTKITSFPTLKLY 251
L+H + PT+ +
Sbjct: 82 ALLKHLNVLGLPTILFF 98
>pdb|2L6C|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Oxidized
Form
pdb|2L6D|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Reduced Form
Length = 110
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 187 FDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDA 232
F+ +V F+ C HCK + + DK G A + I+ +D+
Sbjct: 16 FEGLSDAIVFFHKNLCPHCKNMEKVLDKFG---ARAPQVAISSVDS 58
>pdb|4EVM|A Chain A, 1.5 Angstrom Crystal Structure Of Soluble Domain Of
Membrane-Anchored Thioredoxin Family Protein From
Streptococcus Pneumoniae Strain Canada Mdr_19a
Length = 138
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFAD 221
K K V ++F+A WC C P D++ ++ D
Sbjct: 21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGD 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,294,545
Number of Sequences: 62578
Number of extensions: 395534
Number of successful extensions: 1257
Number of sequences better than 100.0: 177
Number of HSP's better than 100.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1045
Number of HSP's gapped (non-prelim): 208
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)