Query psy7938
Match_columns 305
No_of_seqs 254 out of 2720
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 22:39:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7938.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7938hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190|consensus 100.0 3.9E-36 8.5E-41 272.6 24.0 269 6-280 202-475 (493)
2 PTZ00102 disulphide isomerase; 100.0 5.8E-28 1.3E-32 227.7 27.0 263 5-280 197-467 (477)
3 TIGR01130 ER_PDI_fam protein d 100.0 2.1E-27 4.6E-32 222.9 27.5 271 6-282 178-458 (462)
4 KOG0191|consensus 100.0 1.7E-28 3.7E-33 224.4 13.9 212 28-281 42-255 (383)
5 TIGR02187 GlrX_arch Glutaredox 99.9 5.5E-25 1.2E-29 185.7 12.8 184 37-276 23-214 (215)
6 KOG0190|consensus 99.9 1.3E-21 2.9E-26 178.2 10.3 210 15-279 24-236 (493)
7 cd03006 PDI_a_EFP1_N PDIa fami 99.9 5.9E-21 1.3E-25 143.7 12.1 102 170-274 7-113 (113)
8 PF00085 Thioredoxin: Thioredo 99.8 6.8E-20 1.5E-24 136.3 12.5 101 174-277 1-103 (103)
9 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 2.8E-20 6.1E-25 138.9 10.3 100 173-274 2-104 (104)
10 KOG4277|consensus 99.8 3.9E-20 8.4E-25 155.5 12.2 187 31-278 41-231 (468)
11 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 1.1E-19 2.4E-24 135.5 11.0 102 173-274 1-104 (104)
12 KOG0910|consensus 99.8 6.5E-20 1.4E-24 140.8 9.7 102 174-278 45-148 (150)
13 cd02996 PDI_a_ERp44 PDIa famil 99.8 1.2E-19 2.5E-24 136.5 10.3 101 173-274 2-108 (108)
14 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 1.5E-19 3.3E-24 134.2 10.5 97 174-274 3-101 (101)
15 cd03065 PDI_b_Calsequestrin_N 99.8 8E-19 1.7E-23 133.0 10.6 103 173-277 10-118 (120)
16 cd03002 PDI_a_MPD1_like PDI fa 99.8 9.7E-19 2.1E-23 131.7 10.4 100 174-275 2-109 (109)
17 cd02993 PDI_a_APS_reductase PD 99.8 1.8E-18 3.9E-23 130.2 10.7 100 174-274 3-109 (109)
18 cd02994 PDI_a_TMX PDIa family, 99.8 3.8E-18 8.2E-23 126.7 11.4 98 173-276 2-101 (101)
19 cd02998 PDI_a_ERp38 PDIa famil 99.8 3E-18 6.6E-23 127.9 10.6 101 174-274 2-105 (105)
20 cd03001 PDI_a_P5 PDIa family, 99.8 3.8E-18 8.3E-23 127.0 11.0 99 174-274 2-102 (103)
21 PTZ00102 disulphide isomerase; 99.8 2.1E-18 4.5E-23 162.8 11.8 225 17-278 33-338 (477)
22 cd03006 PDI_a_EFP1_N PDIa fami 99.8 7.7E-20 1.7E-24 137.6 0.6 106 11-148 4-113 (113)
23 PRK09381 trxA thioredoxin; Pro 99.8 1.3E-17 2.9E-22 125.5 12.7 103 173-278 4-108 (109)
24 cd03005 PDI_a_ERp46 PDIa famil 99.8 6.4E-18 1.4E-22 125.5 10.4 98 174-274 2-102 (102)
25 cd02963 TRX_DnaJ TRX domain, D 99.8 6.1E-18 1.3E-22 127.7 9.7 99 176-276 8-110 (111)
26 TIGR01126 pdi_dom protein disu 99.8 9.2E-18 2E-22 124.6 10.5 99 177-277 1-101 (102)
27 cd02999 PDI_a_ERp44_like PDIa 99.7 8.7E-18 1.9E-22 124.3 9.5 89 181-274 8-100 (100)
28 KOG0910|consensus 99.7 3.2E-19 6.9E-24 137.0 1.8 92 30-153 58-149 (150)
29 cd02956 ybbN ybbN protein fami 99.7 1.5E-17 3.2E-22 122.2 10.6 93 180-275 1-96 (96)
30 PTZ00443 Thioredoxin domain-co 99.7 1.4E-17 3E-22 139.8 11.6 107 172-281 30-142 (224)
31 KOG1731|consensus 99.7 5.1E-18 1.1E-22 154.5 9.2 233 10-277 33-272 (606)
32 TIGR01130 ER_PDI_fam protein d 99.7 5.3E-18 1.1E-22 159.3 9.5 230 17-278 2-327 (462)
33 COG3118 Thioredoxin domain-con 99.7 1.3E-17 2.9E-22 141.4 10.3 105 173-280 24-132 (304)
34 cd02997 PDI_a_PDIR PDIa family 99.7 3.5E-17 7.5E-22 122.0 10.9 99 174-274 2-104 (104)
35 PHA02278 thioredoxin-like prot 99.7 2.4E-17 5.1E-22 122.1 9.8 90 180-273 5-100 (103)
36 cd02954 DIM1 Dim1 family; Dim1 99.7 1.6E-17 3.5E-22 124.0 8.1 84 180-266 3-89 (114)
37 cd03003 PDI_a_ERdj5_N PDIa fam 99.7 9.8E-19 2.1E-23 129.9 1.0 98 18-147 3-100 (101)
38 cd03007 PDI_a_ERp29_N PDIa fam 99.7 3.3E-17 7.2E-22 122.7 8.5 97 174-277 3-115 (116)
39 cd02985 TRX_CDSP32 TRX family, 99.7 8.8E-17 1.9E-21 119.7 10.7 93 179-276 3-101 (103)
40 PRK10996 thioredoxin 2; Provis 99.7 2E-16 4.3E-21 124.1 11.6 103 171-277 34-138 (139)
41 cd02948 TRX_NDPK TRX domain, T 99.7 1.8E-16 4E-21 117.8 10.5 95 178-276 6-101 (102)
42 PLN02309 5'-adenylylsulfate re 99.7 1.7E-16 3.7E-21 145.8 12.4 111 166-277 339-456 (457)
43 cd02950 TxlA TRX-like protein 99.7 4.3E-16 9.3E-21 122.6 12.5 113 180-295 11-127 (142)
44 TIGR00424 APS_reduc 5'-adenyly 99.7 2E-16 4.3E-21 145.4 12.0 107 169-276 348-461 (463)
45 KOG0912|consensus 99.7 5.8E-17 1.3E-21 136.7 7.3 198 27-278 7-208 (375)
46 cd02992 PDI_a_QSOX PDIa family 99.7 3.3E-16 7.2E-21 118.7 10.3 99 173-271 2-109 (114)
47 TIGR01068 thioredoxin thioredo 99.7 5E-16 1.1E-20 114.8 10.8 97 178-277 2-100 (101)
48 cd02957 Phd_like Phosducin (Ph 99.7 4.5E-16 9.8E-21 117.9 10.5 89 172-264 4-95 (113)
49 cd02961 PDI_a_family Protein D 99.7 2.5E-16 5.4E-21 116.1 8.8 98 176-274 2-101 (101)
50 cd03000 PDI_a_TMX3 PDIa family 99.7 5.1E-16 1.1E-20 115.8 10.3 94 180-277 7-103 (104)
51 KOG0191|consensus 99.7 5.3E-17 1.1E-21 148.7 5.6 213 18-265 146-364 (383)
52 KOG0907|consensus 99.7 5.6E-16 1.2E-20 114.8 9.6 86 187-277 18-105 (106)
53 cd02965 HyaE HyaE family; HyaE 99.7 1.7E-15 3.7E-20 112.3 11.1 94 174-271 12-109 (111)
54 cd02996 PDI_a_ERp44 PDIa famil 99.7 1.5E-17 3.3E-22 125.0 0.2 105 18-148 3-108 (108)
55 cd03065 PDI_b_Calsequestrin_N 99.6 5.8E-17 1.3E-21 122.8 2.8 107 15-152 8-119 (120)
56 cd03004 PDI_a_ERdj5_C PDIa fam 99.6 2.1E-17 4.5E-22 123.3 0.2 84 33-148 19-104 (104)
57 cd02962 TMX2 TMX2 family; comp 99.6 2.1E-15 4.5E-20 119.3 11.3 90 172-263 28-126 (152)
58 cd02989 Phd_like_TxnDC9 Phosdu 99.6 2.2E-15 4.8E-20 113.9 11.0 98 172-274 4-112 (113)
59 cd03007 PDI_a_ERp29_N PDIa fam 99.6 8.8E-17 1.9E-21 120.4 2.6 102 18-151 3-115 (116)
60 cd02987 Phd_like_Phd Phosducin 99.6 4.5E-15 9.8E-20 120.6 11.7 104 170-277 60-174 (175)
61 PF00085 Thioredoxin: Thioredo 99.6 4.7E-17 1E-21 120.9 -0.4 100 20-151 3-103 (103)
62 cd02953 DsbDgamma DsbD gamma f 99.6 2.5E-15 5.3E-20 112.1 8.3 93 180-275 2-104 (104)
63 cd02994 PDI_a_TMX PDIa family, 99.6 1.3E-16 2.8E-21 118.4 1.1 98 18-149 3-100 (101)
64 PHA02278 thioredoxin-like prot 99.6 7.4E-17 1.6E-21 119.4 -0.7 88 30-147 11-100 (103)
65 PLN00410 U5 snRNP protein, DIM 99.6 9.1E-15 2E-19 113.4 10.8 98 179-278 11-120 (142)
66 cd02949 TRX_NTR TRX domain, no 99.6 1.1E-14 2.4E-19 107.1 10.7 91 182-275 5-97 (97)
67 KOG0908|consensus 99.6 8.1E-15 1.8E-19 120.6 10.7 111 174-289 3-117 (288)
68 cd02954 DIM1 Dim1 family; Dim1 99.6 3.2E-16 6.9E-21 117.0 2.1 72 33-133 14-85 (114)
69 COG3118 Thioredoxin domain-con 99.6 2.5E-16 5.5E-21 133.7 1.6 105 18-154 25-132 (304)
70 cd02984 TRX_PICOT TRX domain, 99.6 9.5E-15 2.1E-19 107.4 9.9 92 179-274 2-96 (97)
71 cd03002 PDI_a_MPD1_like PDI fa 99.6 4.1E-16 8.9E-21 117.3 1.6 99 20-148 4-108 (109)
72 KOG4277|consensus 99.6 2.5E-15 5.4E-20 126.7 6.3 92 188-281 41-135 (468)
73 KOG0907|consensus 99.6 6.8E-16 1.5E-20 114.4 2.4 84 33-150 21-104 (106)
74 PTZ00443 Thioredoxin domain-co 99.6 6E-16 1.3E-20 129.9 2.0 106 16-153 30-140 (224)
75 cd02986 DLP Dim1 family, Dim1- 99.6 1.3E-14 2.9E-19 107.4 8.8 95 180-276 3-109 (114)
76 PTZ00051 thioredoxin; Provisio 99.6 2.8E-14 6E-19 105.2 10.3 92 174-271 2-96 (98)
77 cd02988 Phd_like_VIAF Phosduci 99.6 2.3E-14 5E-19 118.0 10.7 103 170-277 80-191 (192)
78 cd02956 ybbN ybbN protein fami 99.6 1.1E-15 2.5E-20 112.2 2.7 85 33-149 12-96 (96)
79 cd02963 TRX_DnaJ TRX domain, D 99.6 1.1E-15 2.4E-20 115.3 2.0 87 32-150 23-110 (111)
80 cd03005 PDI_a_ERp46 PDIa famil 99.5 6.6E-16 1.4E-20 114.6 0.2 85 35-148 18-102 (102)
81 cd02999 PDI_a_ERp44_like PDIa 99.5 1.1E-15 2.4E-20 113.0 0.5 83 33-148 18-100 (100)
82 KOG0912|consensus 99.5 1.4E-14 3.1E-19 122.3 7.0 103 178-281 2-109 (375)
83 cd03001 PDI_a_P5 PDIa family, 99.5 1.5E-15 3.3E-20 112.9 1.0 83 34-148 19-102 (103)
84 PTZ00062 glutaredoxin; Provisi 99.5 1.4E-14 3.1E-19 119.7 6.6 145 36-250 20-174 (204)
85 PRK09381 trxA thioredoxin; Pro 99.5 2.9E-15 6.2E-20 112.7 2.0 105 16-152 3-108 (109)
86 cd02993 PDI_a_APS_reductase PD 99.5 1.4E-15 3.1E-20 114.4 0.1 101 17-148 2-109 (109)
87 cd02975 PfPDO_like_N Pyrococcu 99.5 7.8E-14 1.7E-18 105.5 9.5 87 188-277 20-109 (113)
88 PRK10996 thioredoxin 2; Provis 99.5 2.2E-15 4.9E-20 118.2 0.5 104 16-151 35-138 (139)
89 cd02947 TRX_family TRX family; 99.5 2.1E-13 4.6E-18 98.5 10.6 90 181-275 2-93 (93)
90 cd02997 PDI_a_PDIR PDIa family 99.5 3.5E-15 7.6E-20 111.1 0.7 101 20-148 4-104 (104)
91 PLN00410 U5 snRNP protein, DIM 99.5 1.2E-14 2.5E-19 112.8 3.1 96 32-156 22-124 (142)
92 cd02985 TRX_CDSP32 TRX family, 99.5 1.4E-14 3.1E-19 107.8 2.2 86 33-150 15-101 (103)
93 cd02951 SoxW SoxW family; SoxW 99.5 3.6E-13 7.8E-18 103.8 10.1 90 187-278 10-119 (125)
94 TIGR01295 PedC_BrcD bacterioci 99.5 4.8E-13 1E-17 102.3 10.6 96 174-275 8-121 (122)
95 cd02992 PDI_a_QSOX PDIa family 99.5 1E-14 2.2E-19 110.5 1.2 87 17-127 2-89 (114)
96 cd03000 PDI_a_TMX3 PDIa family 99.5 1.7E-14 3.7E-19 107.5 2.3 89 33-151 15-103 (104)
97 TIGR01126 pdi_dom protein disu 99.5 1.6E-14 3.4E-19 107.0 1.8 92 30-151 10-101 (102)
98 cd02965 HyaE HyaE family; HyaE 99.5 2.1E-14 4.5E-19 106.5 2.3 93 21-145 15-109 (111)
99 cd02998 PDI_a_ERp38 PDIa famil 99.5 2E-14 4.4E-19 107.0 1.7 99 20-148 4-105 (105)
100 cd02950 TxlA TRX-like protein 99.4 3E-14 6.5E-19 112.1 2.4 97 29-155 16-113 (142)
101 cd02957 Phd_like Phosducin (Ph 99.4 1.2E-14 2.6E-19 110.1 0.0 84 34-148 25-112 (113)
102 cd02948 TRX_NDPK TRX domain, T 99.4 1.3E-14 2.7E-19 107.9 -0.3 86 31-150 15-101 (102)
103 cd02995 PDI_a_PDI_a'_C PDIa fa 99.4 2.6E-14 5.6E-19 106.3 1.4 100 18-148 2-104 (104)
104 KOG0908|consensus 99.4 4.4E-14 9.6E-19 116.3 2.2 93 28-154 16-108 (288)
105 TIGR00424 APS_reduc 5'-adenyly 99.4 3.2E-14 6.9E-19 130.9 1.4 106 16-150 351-461 (463)
106 cd02962 TMX2 TMX2 family; comp 99.4 2.1E-14 4.5E-19 113.6 -0.2 90 16-134 28-126 (152)
107 PTZ00062 glutaredoxin; Provisi 99.4 1.5E-12 3.1E-17 107.8 10.7 92 179-281 6-97 (204)
108 cd02989 Phd_like_TxnDC9 Phosdu 99.4 2.7E-14 5.8E-19 107.9 0.2 88 31-148 20-112 (113)
109 cd02986 DLP Dim1 family, Dim1- 99.4 1.1E-13 2.4E-18 102.5 3.4 93 32-153 13-112 (114)
110 cd02952 TRP14_like Human TRX-r 99.4 2.6E-12 5.6E-17 97.1 8.7 92 179-274 9-118 (119)
111 cd02953 DsbDgamma DsbD gamma f 99.4 8.1E-14 1.7E-18 103.9 0.4 93 29-148 7-103 (104)
112 KOG1731|consensus 99.4 9.3E-13 2E-17 120.5 6.4 106 171-276 38-151 (606)
113 cd02982 PDI_b'_family Protein 99.4 3.7E-12 7.9E-17 94.6 8.5 85 190-277 12-102 (103)
114 TIGR01068 thioredoxin thioredo 99.4 4.6E-13 9.9E-18 98.8 3.4 86 34-151 15-100 (101)
115 cd02959 ERp19 Endoplasmic reti 99.4 1.9E-12 4.2E-17 98.3 6.9 89 186-274 15-109 (117)
116 cd02982 PDI_b'_family Protein 99.3 4.6E-13 1E-17 99.5 3.3 90 34-151 13-102 (103)
117 cd02961 PDI_a_family Protein D 99.3 9.9E-14 2.1E-18 102.1 -0.5 87 32-148 14-101 (101)
118 cd02975 PfPDO_like_N Pyrococcu 99.3 6.6E-13 1.4E-17 100.4 3.1 87 34-153 23-111 (113)
119 PF13848 Thioredoxin_6: Thiore 99.3 1.7E-10 3.6E-15 94.8 17.4 168 77-276 9-184 (184)
120 cd02987 Phd_like_Phd Phosducin 99.3 2.7E-13 5.8E-18 110.3 0.6 85 35-150 85-173 (175)
121 cd02984 TRX_PICOT TRX domain, 99.3 2E-13 4.3E-18 100.3 -0.3 83 33-148 14-96 (97)
122 PLN02309 5'-adenylylsulfate re 99.3 5.6E-13 1.2E-17 122.7 1.2 106 16-151 345-456 (457)
123 TIGR00411 redox_disulf_1 small 99.3 2.8E-11 6E-16 85.9 9.5 78 193-277 2-81 (82)
124 cd02949 TRX_NTR TRX domain, no 99.3 8.3E-13 1.8E-17 97.1 1.4 85 32-148 12-96 (97)
125 TIGR02187 GlrX_arch Glutaredox 99.3 2.7E-11 5.9E-16 102.2 10.0 88 190-278 19-111 (215)
126 PTZ00051 thioredoxin; Provisio 99.2 2.7E-12 6E-17 94.4 0.6 81 31-145 16-96 (98)
127 cd02951 SoxW SoxW family; SoxW 99.2 7.5E-12 1.6E-16 96.5 2.9 98 31-155 11-122 (125)
128 PF13098 Thioredoxin_2: Thiore 99.2 3.6E-11 7.8E-16 90.7 6.3 85 188-274 3-112 (112)
129 PRK00293 dipZ thiol:disulfide 99.2 8.9E-11 1.9E-15 112.4 9.9 101 174-277 454-569 (571)
130 TIGR00412 redox_disulf_2 small 99.2 1.3E-10 2.8E-15 81.3 7.7 73 194-274 2-75 (76)
131 TIGR02738 TrbB type-F conjugat 99.1 4.3E-10 9.3E-15 89.2 10.3 86 189-276 49-151 (153)
132 TIGR02740 TraF-like TraF-like 99.1 3.4E-10 7.3E-15 98.4 10.6 89 189-279 165-265 (271)
133 PRK14018 trifunctional thiored 99.1 3.1E-10 6.8E-15 106.1 10.6 89 186-275 52-170 (521)
134 TIGR01295 PedC_BrcD bacterioci 99.1 7.8E-12 1.7E-16 95.6 -0.2 91 30-149 20-121 (122)
135 cd02955 SSP411 TRX domain, SSP 99.1 4.4E-10 9.6E-15 85.9 9.3 88 186-275 11-116 (124)
136 cd02947 TRX_family TRX family; 99.1 2E-11 4.3E-16 88.0 1.4 82 34-148 11-92 (93)
137 PHA02125 thioredoxin-like prot 99.1 8E-10 1.7E-14 77.0 8.4 67 194-272 2-71 (75)
138 cd02988 Phd_like_VIAF Phosduci 99.1 4E-11 8.8E-16 98.8 2.1 83 35-150 104-190 (192)
139 PRK15412 thiol:disulfide inter 99.1 2E-09 4.3E-14 88.7 11.0 86 188-278 66-176 (185)
140 cd03008 TryX_like_RdCVF Trypar 99.0 8.6E-10 1.9E-14 86.5 8.4 74 189-263 24-130 (146)
141 TIGR00411 redox_disulf_1 small 99.0 2.1E-10 4.6E-15 81.3 4.3 78 38-151 4-81 (82)
142 PF13905 Thioredoxin_8: Thiore 99.0 1.3E-09 2.8E-14 79.5 8.5 67 190-256 1-94 (95)
143 cd02964 TryX_like_family Trypa 99.0 1.2E-09 2.6E-14 84.9 7.5 68 189-256 16-111 (132)
144 PRK03147 thiol-disulfide oxido 99.0 4.5E-09 9.8E-14 85.5 11.1 102 174-277 46-171 (173)
145 cd02952 TRP14_like Human TRX-r 99.0 1.5E-10 3.2E-15 87.5 2.0 68 34-127 22-101 (119)
146 cd03010 TlpA_like_DsbE TlpA-li 99.0 3.2E-09 6.9E-14 81.9 9.2 78 189-270 24-126 (127)
147 TIGR00385 dsbE periplasmic pro 99.0 4.7E-09 1E-13 85.6 10.6 85 189-278 62-171 (173)
148 PHA02125 thioredoxin-like prot 99.0 1.5E-10 3.3E-15 80.7 1.5 70 37-146 2-71 (75)
149 cd03011 TlpA_like_ScsD_MtbDsbE 99.0 4.4E-09 9.6E-14 80.5 9.7 91 176-272 7-120 (123)
150 cd03009 TryX_like_TryX_NRX Try 99.0 2.3E-09 5E-14 83.2 8.1 68 189-256 17-111 (131)
151 PLN02919 haloacid dehalogenase 99.0 1.2E-08 2.6E-13 104.3 14.7 88 189-277 419-535 (1057)
152 cd02958 UAS UAS family; UAS is 98.9 1.1E-08 2.3E-13 77.4 10.7 89 187-277 14-110 (114)
153 cd02966 TlpA_like_family TlpA- 98.9 5.9E-09 1.3E-13 78.1 8.9 73 190-263 19-116 (116)
154 cd02960 AGR Anterior Gradient 98.9 9E-09 2E-13 78.7 8.9 75 187-264 20-99 (130)
155 PRK11509 hydrogenase-1 operon 98.9 2.8E-08 6.1E-13 76.0 11.0 106 175-283 20-129 (132)
156 cd02959 ERp19 Endoplasmic reti 98.9 1.4E-10 2.9E-15 88.2 -2.0 96 31-152 17-113 (117)
157 cd02973 TRX_GRX_like Thioredox 98.9 5.2E-09 1.1E-13 71.1 6.1 54 194-250 3-58 (67)
158 TIGR03143 AhpF_homolog putativ 98.9 1.9E-08 4E-13 96.8 11.9 165 78-274 385-554 (555)
159 PRK13728 conjugal transfer pro 98.8 2.7E-08 5.9E-13 80.5 10.3 81 194-278 73-171 (181)
160 cd02967 mauD Methylamine utili 98.8 1.3E-08 2.7E-13 76.9 7.5 71 189-263 20-112 (114)
161 COG4232 Thiol:disulfide interc 98.8 6.2E-09 1.3E-13 96.8 6.5 103 175-278 457-568 (569)
162 smart00594 UAS UAS domain. 98.8 7.3E-08 1.6E-12 73.8 10.3 93 180-274 14-121 (122)
163 TIGR00412 redox_disulf_2 small 98.8 4.6E-09 1E-13 73.3 3.2 72 38-148 3-75 (76)
164 PF13899 Thioredoxin_7: Thiore 98.8 1E-08 2.2E-13 72.7 4.6 65 187-253 14-82 (82)
165 cd03026 AhpF_NTD_C TRX-GRX-lik 98.7 6.2E-08 1.4E-12 69.7 8.1 74 190-271 12-87 (89)
166 PRK00293 dipZ thiol:disulfide 98.7 6.1E-09 1.3E-13 99.9 3.4 92 34-151 475-569 (571)
167 cd02973 TRX_GRX_like Thioredox 98.7 3.2E-09 7E-14 72.2 0.9 55 38-122 4-58 (67)
168 cd03012 TlpA_like_DipZ_like Tl 98.7 8.2E-08 1.8E-12 73.9 8.9 75 189-264 22-125 (126)
169 KOG0913|consensus 98.7 8.6E-09 1.9E-13 84.7 3.2 106 173-284 25-132 (248)
170 PRK14018 trifunctional thiored 98.7 9.7E-09 2.1E-13 96.2 3.7 126 5-151 37-172 (521)
171 TIGR02740 TraF-like TraF-like 98.7 1.9E-08 4.1E-13 87.6 4.6 90 35-153 168-265 (271)
172 TIGR02738 TrbB type-F conjugat 98.7 1.9E-08 4.1E-13 79.9 4.1 85 37-151 54-152 (153)
173 PF08534 Redoxin: Redoxin; In 98.7 1.9E-07 4.2E-12 73.7 9.9 77 189-266 27-136 (146)
174 PF13848 Thioredoxin_6: Thiore 98.6 4.6E-07 9.9E-12 74.3 11.3 141 5-150 40-184 (184)
175 cd02955 SSP411 TRX domain, SSP 98.6 1.9E-08 4.1E-13 76.9 2.3 96 29-151 11-118 (124)
176 PRK03147 thiol-disulfide oxido 98.6 4.1E-08 8.8E-13 79.8 3.1 112 4-151 39-171 (173)
177 PF02114 Phosducin: Phosducin; 98.6 6.8E-07 1.5E-11 77.2 10.7 108 172-283 125-243 (265)
178 PLN02399 phospholipid hydroper 98.5 1E-06 2.2E-11 74.9 10.6 89 189-278 98-234 (236)
179 TIGR02661 MauD methylamine deh 98.5 8.9E-07 1.9E-11 73.1 10.1 85 189-277 73-178 (189)
180 PTZ00056 glutathione peroxidas 98.5 1.1E-06 2.3E-11 73.3 10.1 89 189-278 38-178 (199)
181 cd02983 P5_C P5 family, C-term 98.5 1.5E-06 3.3E-11 67.1 10.3 76 80-159 46-122 (130)
182 PF13098 Thioredoxin_2: Thiore 98.5 5.8E-09 1.3E-13 78.5 -3.3 89 33-148 5-112 (112)
183 PRK11509 hydrogenase-1 operon 98.5 7.7E-07 1.7E-11 68.2 8.3 63 85-154 63-126 (132)
184 TIGR01626 ytfJ_HI0045 conserve 98.4 1.2E-06 2.7E-11 71.3 8.9 86 189-274 58-176 (184)
185 cd03008 TryX_like_RdCVF Trypar 98.4 5.2E-08 1.1E-12 76.5 0.7 88 34-128 26-124 (146)
186 PLN02412 probable glutathione 98.4 1.4E-06 3.1E-11 70.5 8.9 89 189-278 28-164 (167)
187 cd02969 PRX_like1 Peroxiredoxi 98.4 3.6E-06 7.9E-11 68.3 11.0 99 189-290 24-164 (171)
188 PRK15412 thiol:disulfide inter 98.4 1E-07 2.2E-12 78.5 1.8 111 33-154 68-178 (185)
189 PRK13728 conjugal transfer pro 98.4 4.9E-07 1.1E-11 73.2 5.1 87 37-153 73-172 (181)
190 cd03009 TryX_like_TryX_NRX Try 98.4 1.2E-07 2.5E-12 73.5 1.5 71 34-128 19-111 (131)
191 cd00340 GSH_Peroxidase Glutath 98.4 2.3E-06 5.1E-11 68.1 8.6 83 189-273 21-151 (152)
192 KOG0914|consensus 98.4 6.1E-07 1.3E-11 73.0 5.1 83 173-256 125-217 (265)
193 TIGR00385 dsbE periplasmic pro 98.3 6.8E-08 1.5E-12 78.7 -0.6 107 34-152 64-171 (173)
194 TIGR02540 gpx7 putative glutat 98.3 4.4E-06 9.6E-11 66.5 9.3 87 189-276 21-151 (153)
195 PF13905 Thioredoxin_8: Thiore 98.3 1.3E-07 2.8E-12 68.9 0.2 88 35-127 3-93 (95)
196 cd02964 TryX_like_family Trypa 98.3 1.9E-07 4.1E-12 72.5 1.1 88 34-128 18-111 (132)
197 PF01216 Calsequestrin: Calseq 98.3 7.6E-05 1.7E-09 65.4 16.9 158 89-280 89-249 (383)
198 TIGR02196 GlrX_YruB Glutaredox 98.3 2.2E-06 4.8E-11 58.8 6.1 67 194-275 2-74 (74)
199 COG0526 TrxA Thiol-disulfide i 98.3 2.9E-06 6.2E-11 63.2 7.1 71 190-263 32-107 (127)
200 cd03072 PDI_b'_ERp44 PDIb' fam 98.3 5.2E-06 1.1E-10 62.3 8.2 66 87-155 46-111 (111)
201 cd03026 AhpF_NTD_C TRX-GRX-lik 98.3 2.9E-07 6.2E-12 66.2 1.0 55 38-122 17-71 (89)
202 PF07912 ERp29_N: ERp29, N-ter 98.2 3.3E-05 7.2E-10 57.6 11.8 104 173-279 5-120 (126)
203 cd02967 mauD Methylamine utili 98.2 2.3E-07 5.1E-12 69.9 0.4 25 34-58 22-46 (114)
204 cd03011 TlpA_like_ScsD_MtbDsbE 98.2 3.9E-07 8.5E-12 69.6 1.3 100 34-146 21-120 (123)
205 KOG2501|consensus 98.2 1.2E-06 2.7E-11 68.4 4.0 68 189-256 32-127 (157)
206 cd02958 UAS UAS family; UAS is 98.2 1.1E-06 2.4E-11 66.4 3.6 94 31-152 15-111 (114)
207 PF13728 TraF: F plasmid trans 98.2 8.2E-06 1.8E-10 68.6 9.0 83 189-273 119-213 (215)
208 TIGR01626 ytfJ_HI0045 conserve 98.2 9.1E-07 2E-11 72.1 3.1 135 3-147 26-175 (184)
209 PRK15317 alkyl hydroperoxide r 98.2 8E-05 1.7E-09 71.3 16.6 136 116-279 60-199 (517)
210 PLN02919 haloacid dehalogenase 98.2 8.8E-07 1.9E-11 90.8 3.1 107 34-153 421-537 (1057)
211 cd01659 TRX_superfamily Thiore 98.2 7.3E-06 1.6E-10 53.8 6.5 58 194-254 1-63 (69)
212 cd03010 TlpA_like_DsbE TlpA-li 98.2 3.9E-07 8.4E-12 70.2 -0.1 98 34-143 26-125 (127)
213 KOG0914|consensus 98.2 2.3E-07 5E-12 75.5 -1.4 79 28-132 139-221 (265)
214 PTZ00256 glutathione peroxidas 98.2 2.8E-05 6.1E-10 63.9 10.9 87 190-277 40-180 (183)
215 PF13192 Thioredoxin_3: Thiore 98.1 2E-05 4.4E-10 54.8 8.5 71 196-275 4-76 (76)
216 COG2143 Thioredoxin-related pr 98.1 3.3E-05 7.1E-10 59.9 9.8 87 187-275 39-146 (182)
217 cd03017 PRX_BCP Peroxiredoxin 98.1 1.4E-05 3.1E-10 62.4 8.0 83 190-273 23-138 (140)
218 TIGR02200 GlrX_actino Glutared 98.1 1.4E-05 3E-10 55.5 6.7 68 194-275 2-76 (77)
219 PF00578 AhpC-TSA: AhpC/TSA fa 98.1 2.6E-05 5.7E-10 59.4 8.4 67 189-256 24-120 (124)
220 cd02991 UAS_ETEA UAS family, E 98.0 4.1E-05 8.9E-10 57.8 9.0 88 187-277 14-112 (116)
221 PTZ00056 glutathione peroxidas 98.0 4.6E-06 1E-10 69.4 4.0 47 5-58 18-64 (199)
222 cd02966 TlpA_like_family TlpA- 98.0 1.2E-06 2.7E-11 65.3 0.4 69 34-128 20-109 (116)
223 TIGR03140 AhpF alkyl hydropero 98.0 0.00028 6E-09 67.5 16.5 136 116-279 61-200 (515)
224 smart00594 UAS UAS domain. 98.0 4.5E-06 9.8E-11 63.8 3.4 93 31-148 25-121 (122)
225 TIGR02739 TraF type-F conjugat 98.0 4.2E-05 9.1E-10 65.6 9.6 85 190-276 150-246 (256)
226 cd02981 PDI_b_family Protein D 98.0 4.3E-05 9.4E-10 55.6 8.2 88 182-277 10-97 (97)
227 PF01216 Calsequestrin: Calseq 98.0 7.5E-05 1.6E-09 65.4 10.5 104 173-279 35-145 (383)
228 TIGR02661 MauD methylamine deh 98.0 6.6E-06 1.4E-10 68.0 3.8 130 4-153 50-180 (189)
229 PLN02399 phospholipid hydroper 98.0 9.1E-06 2E-10 69.1 4.6 53 3-62 76-128 (236)
230 KOG0913|consensus 97.9 7.1E-06 1.5E-10 67.8 2.8 93 34-158 40-132 (248)
231 PF13899 Thioredoxin_7: Thiore 97.9 7.7E-07 1.7E-11 63.0 -2.5 69 30-125 14-82 (82)
232 PF14595 Thioredoxin_9: Thiore 97.9 5.1E-05 1.1E-09 58.5 7.3 73 189-262 40-115 (129)
233 cd03015 PRX_Typ2cys Peroxiredo 97.9 9E-05 1.9E-09 60.3 9.1 87 190-277 29-156 (173)
234 cd03073 PDI_b'_ERp72_ERp57 PDI 97.9 9.2E-05 2E-09 55.5 8.4 72 75-151 34-110 (111)
235 cd02970 PRX_like2 Peroxiredoxi 97.9 7.7E-05 1.7E-09 58.7 8.4 45 191-236 25-69 (149)
236 COG4232 Thiol:disulfide interc 97.9 1E-05 2.2E-10 75.7 3.6 90 34-151 475-567 (569)
237 KOG0911|consensus 97.9 2.4E-05 5.1E-10 64.5 5.1 72 32-133 16-87 (227)
238 PRK13703 conjugal pilus assemb 97.9 0.00014 3.1E-09 62.0 10.0 86 190-277 143-240 (248)
239 TIGR02196 GlrX_YruB Glutaredox 97.8 7.7E-06 1.7E-10 56.0 1.7 69 38-148 3-73 (74)
240 PF06110 DUF953: Eukaryotic pr 97.8 6.9E-05 1.5E-09 56.5 6.8 73 180-254 6-99 (119)
241 PRK00522 tpx lipid hydroperoxi 97.8 0.0002 4.4E-09 57.9 9.7 84 189-275 43-166 (167)
242 KOG1672|consensus 97.8 0.00012 2.7E-09 58.8 8.0 100 173-277 67-177 (211)
243 TIGR02180 GRX_euk Glutaredoxin 97.8 4.1E-05 8.8E-10 54.1 4.8 53 194-250 1-60 (84)
244 KOG2603|consensus 97.8 0.00015 3.2E-09 62.6 8.7 112 171-282 39-170 (331)
245 TIGR03137 AhpC peroxiredoxin. 97.7 0.00026 5.6E-09 58.3 9.1 87 190-277 31-155 (187)
246 KOG2501|consensus 97.7 2.8E-05 6E-10 60.9 3.0 86 35-127 35-126 (157)
247 PRK09437 bcp thioredoxin-depen 97.7 0.00029 6.3E-09 56.0 8.9 80 189-269 29-144 (154)
248 TIGR02200 GlrX_actino Glutared 97.7 1.5E-05 3.3E-10 55.2 1.2 22 37-58 2-23 (77)
249 KOG3425|consensus 97.7 0.00029 6.3E-09 52.1 7.8 73 180-254 13-105 (128)
250 PF03190 Thioredox_DsbH: Prote 97.7 0.00011 2.4E-09 58.4 5.9 74 180-256 28-114 (163)
251 cd01659 TRX_superfamily Thiore 97.7 2.2E-05 4.8E-10 51.4 1.7 60 37-126 1-63 (69)
252 PF08534 Redoxin: Redoxin; In 97.7 7.8E-06 1.7E-10 64.4 -0.6 111 3-129 3-127 (146)
253 cd03072 PDI_b'_ERp44 PDIb' fam 97.7 0.00042 9.1E-09 51.9 8.8 100 174-278 1-108 (111)
254 cd02968 SCO SCO (an acronym fo 97.6 0.0002 4.3E-09 55.9 7.2 45 189-233 21-68 (142)
255 PRK11200 grxA glutaredoxin 1; 97.6 0.00033 7.2E-09 49.7 7.5 75 193-279 2-84 (85)
256 COG0526 TrxA Thiol-disulfide i 97.5 2.2E-05 4.9E-10 58.2 0.6 68 33-128 32-101 (127)
257 cd03012 TlpA_like_DipZ_like Tl 97.5 2.6E-05 5.7E-10 59.9 0.8 85 34-128 24-117 (126)
258 cd02969 PRX_like1 Peroxiredoxi 97.5 0.0001 2.2E-09 59.7 4.3 135 4-155 2-155 (171)
259 cd03014 PRX_Atyp2cys Peroxired 97.5 0.00065 1.4E-08 53.2 8.6 72 189-263 25-128 (143)
260 cd02971 PRX_family Peroxiredox 97.5 0.00052 1.1E-08 53.4 7.9 44 189-233 21-65 (140)
261 PRK13190 putative peroxiredoxi 97.5 0.00075 1.6E-08 56.3 9.0 88 190-278 27-154 (202)
262 PLN02412 probable glutathione 97.5 0.00011 2.3E-09 59.5 3.8 48 4-58 7-54 (167)
263 PRK15000 peroxidase; Provision 97.5 0.0011 2.3E-08 55.3 9.5 88 189-277 33-161 (200)
264 cd03018 PRX_AhpE_like Peroxire 97.4 0.00094 2E-08 52.6 8.7 42 191-233 29-71 (149)
265 cd02960 AGR Anterior Gradient 97.4 1.2E-05 2.7E-10 61.5 -2.2 24 30-53 20-43 (130)
266 cd03073 PDI_b'_ERp72_ERp57 PDI 97.4 0.0014 3E-08 49.1 8.7 96 176-276 3-109 (111)
267 PRK10382 alkyl hydroperoxide r 97.4 0.0015 3.3E-08 53.7 9.6 88 190-278 31-156 (187)
268 cd02976 NrdH NrdH-redoxin (Nrd 97.3 0.00089 1.9E-08 45.4 5.9 65 194-273 2-72 (73)
269 PRK10877 protein disulfide iso 97.3 0.00091 2E-08 57.0 7.1 82 189-278 106-231 (232)
270 cd02983 P5_C P5 family, C-term 97.3 0.0043 9.3E-08 47.9 10.2 105 174-279 4-116 (130)
271 PF13728 TraF: F plasmid trans 97.2 0.00026 5.6E-09 59.6 3.1 80 40-147 127-213 (215)
272 PTZ00256 glutathione peroxidas 97.2 0.00036 7.7E-09 57.3 3.3 47 6-59 20-67 (183)
273 PF07912 ERp29_N: ERp29, N-ter 97.1 0.0047 1E-07 46.3 8.8 68 83-151 47-118 (126)
274 KOG0911|consensus 97.1 0.00038 8.2E-09 57.5 3.0 80 189-272 16-97 (227)
275 cd00340 GSH_Peroxidase Glutath 97.1 0.00014 3.1E-09 57.8 0.5 45 6-58 2-46 (152)
276 TIGR02180 GRX_euk Glutaredoxin 97.0 0.00021 4.6E-09 50.3 0.9 56 37-121 1-59 (84)
277 TIGR02183 GRXA Glutaredoxin, G 97.0 0.0024 5.1E-08 45.5 6.3 75 193-279 1-83 (86)
278 KOG3171|consensus 97.0 0.0028 6.1E-08 51.9 7.3 104 173-280 139-253 (273)
279 PRK10606 btuE putative glutath 97.0 0.0013 2.7E-08 53.9 5.3 43 189-233 24-66 (183)
280 cd03419 GRX_GRXh_1_2_like Glut 97.0 0.0013 2.8E-08 46.0 4.6 51 194-250 2-59 (82)
281 PF00462 Glutaredoxin: Glutare 97.0 0.002 4.3E-08 42.3 5.0 49 194-250 1-55 (60)
282 cd03016 PRX_1cys Peroxiredoxin 97.0 0.0052 1.1E-07 51.3 8.7 85 192-277 28-153 (203)
283 cd03020 DsbA_DsbC_DsbG DsbA fa 96.9 0.0038 8.3E-08 51.8 7.6 26 189-214 76-101 (197)
284 PRK13599 putative peroxiredoxi 96.9 0.0052 1.1E-07 51.8 8.3 87 190-277 28-155 (215)
285 PRK13189 peroxiredoxin; Provis 96.9 0.0072 1.6E-07 51.2 9.0 87 190-277 35-162 (222)
286 KOG3414|consensus 96.9 0.0072 1.6E-07 45.2 7.7 96 180-277 12-119 (142)
287 TIGR02540 gpx7 putative glutat 96.9 0.001 2.2E-08 52.9 3.4 25 34-58 23-47 (153)
288 TIGR02190 GlrX-dom Glutaredoxi 96.8 0.0024 5.1E-08 44.6 4.9 54 189-250 5-63 (79)
289 PRK13191 putative peroxiredoxi 96.8 0.0083 1.8E-07 50.5 9.0 87 190-277 33-160 (215)
290 TIGR02739 TraF type-F conjugat 96.8 0.0011 2.3E-08 57.0 3.5 87 40-154 157-250 (256)
291 PRK10329 glutaredoxin-like pro 96.8 0.0066 1.4E-07 42.6 7.0 70 194-278 3-77 (81)
292 KOG3170|consensus 96.8 0.017 3.6E-07 47.0 9.7 102 172-278 91-201 (240)
293 cd03014 PRX_Atyp2cys Peroxired 96.8 0.00066 1.4E-08 53.2 1.8 49 3-58 3-52 (143)
294 PTZ00137 2-Cys peroxiredoxin; 96.7 0.014 2.9E-07 50.6 9.6 87 190-277 98-224 (261)
295 PF00578 AhpC-TSA: AhpC/TSA fa 96.7 0.00021 4.5E-09 54.3 -1.4 49 3-58 2-51 (124)
296 cd02991 UAS_ETEA UAS family, E 96.7 0.0012 2.6E-08 49.8 2.6 92 31-153 15-114 (116)
297 PRK11657 dsbG disulfide isomer 96.7 0.016 3.5E-07 50.0 10.0 82 189-275 116-249 (251)
298 PRK13703 conjugal pilus assemb 96.7 0.0014 2.9E-08 56.1 3.2 87 40-154 150-243 (248)
299 cd02066 GRX_family Glutaredoxi 96.6 0.0037 8.1E-08 42.0 4.6 49 194-250 2-56 (72)
300 PTZ00253 tryparedoxin peroxida 96.6 0.021 4.6E-07 47.4 9.5 88 190-278 36-164 (199)
301 cd02976 NrdH NrdH-redoxin (Nrd 96.5 0.00078 1.7E-08 45.7 0.6 19 37-55 2-20 (73)
302 PF03190 Thioredox_DsbH: Prote 96.5 0.00077 1.7E-08 53.6 0.6 74 28-128 32-114 (163)
303 cd03018 PRX_AhpE_like Peroxire 96.5 0.00082 1.8E-08 52.9 0.6 51 3-59 4-55 (149)
304 PRK00522 tpx lipid hydroperoxi 96.4 0.0013 2.8E-08 53.1 1.3 49 3-58 21-70 (167)
305 TIGR02194 GlrX_NrdH Glutaredox 96.4 0.0066 1.4E-07 41.5 4.6 64 195-272 2-70 (72)
306 PRK10606 btuE putative glutath 96.4 0.0064 1.4E-07 49.8 5.2 62 34-124 26-98 (183)
307 PF13192 Thioredoxin_3: Thiore 96.3 0.0027 5.9E-08 44.0 2.4 47 91-149 29-76 (76)
308 TIGR03137 AhpC peroxiredoxin. 96.3 0.0024 5.2E-08 52.6 2.4 141 2-151 4-155 (187)
309 PF05768 DUF836: Glutaredoxin- 96.3 0.0093 2E-07 41.8 5.1 77 194-275 2-81 (81)
310 PF02114 Phosducin: Phosducin; 96.3 0.00052 1.1E-08 59.5 -1.7 87 34-151 147-237 (265)
311 cd03015 PRX_Typ2cys Peroxiredo 96.3 0.0026 5.7E-08 51.6 2.2 139 3-151 2-156 (173)
312 cd03066 PDI_b_Calsequestrin_mi 96.2 0.052 1.1E-06 39.8 8.9 98 174-278 2-101 (102)
313 cd03027 GRX_DEP Glutaredoxin ( 96.2 0.011 2.4E-07 40.4 4.8 49 194-250 3-57 (73)
314 cd03418 GRX_GRXb_1_3_like Glut 96.2 0.012 2.6E-07 40.3 4.9 49 194-250 2-57 (75)
315 TIGR02181 GRX_bact Glutaredoxi 96.1 0.008 1.7E-07 41.8 3.9 49 194-250 1-55 (79)
316 cd02972 DsbA_family DsbA famil 96.1 0.012 2.6E-07 42.0 5.0 59 194-252 1-91 (98)
317 cd03029 GRX_hybridPRX5 Glutare 96.1 0.014 3.1E-07 39.7 5.0 64 194-274 3-71 (72)
318 cd03017 PRX_BCP Peroxiredoxin 96.1 0.002 4.3E-08 50.1 0.7 106 5-128 2-121 (140)
319 cd03069 PDI_b_ERp57 PDIb famil 96.1 0.044 9.5E-07 40.4 7.9 89 180-277 9-103 (104)
320 TIGR03143 AhpF_homolog putativ 96.1 0.046 9.9E-07 52.9 10.0 94 182-278 357-454 (555)
321 PHA03050 glutaredoxin; Provisi 96.0 0.01 2.2E-07 44.1 4.3 55 193-250 14-75 (108)
322 PF07449 HyaE: Hydrogenase-1 e 96.0 0.018 3.9E-07 42.5 5.3 89 173-266 10-103 (107)
323 PRK09437 bcp thioredoxin-depen 95.9 0.0035 7.6E-08 49.7 1.5 49 3-58 7-56 (154)
324 COG2143 Thioredoxin-related pr 95.9 0.018 3.9E-07 45.0 5.0 46 102-151 103-148 (182)
325 TIGR02189 GlrX-like_plant Glut 95.8 0.02 4.3E-07 41.9 5.0 51 194-250 10-67 (99)
326 PF14595 Thioredoxin_9: Thiore 95.7 0.0026 5.7E-08 49.0 -0.3 66 39-132 47-114 (129)
327 TIGR00365 monothiol glutaredox 95.5 0.034 7.4E-07 40.5 5.3 53 190-250 11-73 (97)
328 PF11009 DUF2847: Protein of u 95.5 0.1 2.2E-06 38.4 7.6 90 179-270 7-104 (105)
329 cd02968 SCO SCO (an acronym fo 95.5 0.0046 1E-07 48.1 0.5 46 6-58 2-48 (142)
330 PRK11200 grxA glutaredoxin 1; 95.4 0.0059 1.3E-07 43.2 0.8 79 37-152 3-83 (85)
331 PF00837 T4_deiodinase: Iodoth 95.4 0.36 7.8E-06 40.8 11.5 86 139-228 53-140 (237)
332 PRK13599 putative peroxiredoxi 95.4 0.011 2.4E-07 49.8 2.5 140 3-151 5-155 (215)
333 PRK10382 alkyl hydroperoxide r 95.3 0.0095 2.1E-07 49.0 1.9 140 3-152 5-156 (187)
334 PF00462 Glutaredoxin: Glutare 95.3 0.0041 9E-08 40.8 -0.3 52 38-122 2-55 (60)
335 PRK10638 glutaredoxin 3; Provi 95.3 0.039 8.4E-07 38.8 4.7 49 194-250 4-58 (83)
336 cd03020 DsbA_DsbC_DsbG DsbA fa 95.3 0.0098 2.1E-07 49.3 1.8 39 101-148 159-197 (197)
337 cd03419 GRX_GRXh_1_2_like Glut 95.2 0.009 1.9E-07 41.7 1.2 53 37-120 2-57 (82)
338 cd03028 GRX_PICOT_like Glutare 95.2 0.046 1E-06 39.1 5.0 53 190-250 7-69 (90)
339 cd03023 DsbA_Com1_like DsbA fa 95.2 0.054 1.2E-06 42.4 5.8 32 189-220 4-35 (154)
340 COG0695 GrxC Glutaredoxin and 95.2 0.048 1E-06 38.1 4.8 49 194-250 3-59 (80)
341 KOG1672|consensus 95.1 0.0076 1.7E-07 48.7 0.7 87 34-150 85-176 (211)
342 TIGR02183 GRXA Glutaredoxin, G 95.1 0.0087 1.9E-07 42.5 0.9 80 36-152 1-82 (86)
343 PF02966 DIM1: Mitosis protein 95.1 0.32 6.9E-06 37.1 9.2 94 180-276 9-115 (133)
344 cd03067 PDI_b_PDIR_N PDIb fami 95.0 0.097 2.1E-06 37.8 6.0 69 79-150 39-110 (112)
345 cd02066 GRX_family Glutaredoxi 94.9 0.01 2.2E-07 39.8 0.8 51 38-121 3-55 (72)
346 cd02970 PRX_like2 Peroxiredoxi 94.8 0.0052 1.1E-07 48.1 -1.0 57 35-118 25-83 (149)
347 cd03067 PDI_b_PDIR_N PDIb fami 94.8 0.15 3.2E-06 36.9 6.4 92 180-276 10-110 (112)
348 cd03068 PDI_b_ERp72 PDIb famil 94.7 0.35 7.7E-06 35.8 8.7 97 174-277 2-107 (107)
349 cd02971 PRX_family Peroxiredox 94.7 0.015 3.2E-07 45.1 1.2 46 6-58 2-48 (140)
350 PRK10877 protein disulfide iso 94.6 0.017 3.8E-07 49.2 1.7 43 100-151 188-230 (232)
351 KOG2603|consensus 94.3 0.083 1.8E-06 46.1 5.1 61 89-153 103-167 (331)
352 PF13462 Thioredoxin_4: Thiore 94.2 0.2 4.3E-06 39.7 6.8 44 189-232 11-54 (162)
353 PF06110 DUF953: Eukaryotic pr 93.7 0.012 2.6E-07 44.4 -1.0 59 41-126 34-99 (119)
354 TIGR02190 GlrX-dom Glutaredoxi 93.7 0.021 4.6E-07 39.7 0.2 52 37-121 10-62 (79)
355 PRK13190 putative peroxiredoxi 93.6 0.046 9.9E-07 45.6 2.2 112 39-153 34-155 (202)
356 TIGR02181 GRX_bact Glutaredoxi 93.5 0.036 7.9E-07 38.4 1.2 21 38-58 2-22 (79)
357 PRK10824 glutaredoxin-4; Provi 93.4 0.17 3.6E-06 38.0 4.7 55 190-250 14-76 (115)
358 PRK13191 putative peroxiredoxi 93.2 0.079 1.7E-06 44.6 2.9 49 103-151 105-160 (215)
359 PTZ00137 2-Cys peroxiredoxin; 93.1 0.14 3.1E-06 44.3 4.5 49 104-152 172-225 (261)
360 KOG2640|consensus 92.9 0.038 8.2E-07 48.1 0.6 86 189-279 75-163 (319)
361 cd03016 PRX_1cys Peroxiredoxin 92.8 0.16 3.4E-06 42.4 4.2 140 3-152 2-154 (203)
362 KOG2640|consensus 92.8 0.11 2.3E-06 45.4 3.2 82 39-153 82-163 (319)
363 cd03019 DsbA_DsbA DsbA family, 92.7 0.19 4.1E-06 40.5 4.6 33 189-221 14-46 (178)
364 TIGR02194 GlrX_NrdH Glutaredox 92.7 0.032 6.9E-07 38.0 -0.0 14 39-52 3-16 (72)
365 PRK12759 bifunctional gluaredo 92.6 0.2 4.4E-06 46.5 5.0 49 194-250 4-66 (410)
366 KOG1752|consensus 92.4 0.48 1E-05 34.9 5.8 51 194-250 16-73 (104)
367 PHA03050 glutaredoxin; Provisi 92.3 0.056 1.2E-06 40.2 0.8 22 37-58 15-36 (108)
368 cd02972 DsbA_family DsbA famil 92.1 0.1 2.2E-06 37.0 2.0 20 103-124 72-91 (98)
369 KOG3425|consensus 91.9 0.059 1.3E-06 40.2 0.5 58 43-125 43-104 (128)
370 cd02974 AhpF_NTD_N Alkyl hydro 91.9 3.2 7E-05 29.9 9.6 74 190-276 18-92 (94)
371 TIGR02189 GlrX-like_plant Glut 91.8 0.047 1E-06 39.9 -0.1 22 37-58 10-31 (99)
372 PRK10329 glutaredoxin-like pro 91.4 0.078 1.7E-06 37.1 0.7 73 38-152 4-77 (81)
373 cd03027 GRX_DEP Glutaredoxin ( 91.3 0.096 2.1E-06 35.7 1.1 51 38-121 4-56 (73)
374 PRK13189 peroxiredoxin; Provis 90.6 0.27 6E-06 41.6 3.4 66 104-173 108-180 (222)
375 cd03074 PDI_b'_Calsequestrin_C 90.0 6.2 0.00013 29.0 10.0 103 174-276 3-118 (120)
376 cd03071 PDI_b'_NRX PDIb' famil 89.6 2.3 4.9E-05 31.2 6.8 59 90-152 57-115 (116)
377 TIGR00365 monothiol glutaredox 89.6 0.21 4.5E-06 36.3 1.6 17 42-58 24-40 (97)
378 cd03029 GRX_hybridPRX5 Glutare 89.4 0.12 2.6E-06 35.1 0.2 15 38-52 4-18 (72)
379 PRK10954 periplasmic protein d 89.3 0.52 1.1E-05 39.3 4.1 32 190-221 37-71 (207)
380 cd03418 GRX_GRXb_1_3_like Glut 89.1 0.19 4.2E-06 34.1 1.1 18 38-55 3-20 (75)
381 PRK15317 alkyl hydroperoxide r 89.0 3.3 7.1E-05 39.8 9.8 76 190-277 18-93 (517)
382 KOG3414|consensus 89.0 0.68 1.5E-05 34.9 3.9 95 33-156 23-124 (142)
383 PRK10638 glutaredoxin 3; Provi 88.8 0.14 3.1E-06 35.8 0.3 51 38-121 5-57 (83)
384 PRK15000 peroxidase; Provision 88.6 0.43 9.3E-06 39.7 3.0 115 34-151 35-161 (200)
385 PF07449 HyaE: Hydrogenase-1 e 87.2 0.46 9.9E-06 35.1 2.1 40 85-128 55-94 (107)
386 PF05768 DUF836: Glutaredoxin- 87.1 0.18 3.9E-06 35.2 -0.1 53 89-149 27-81 (81)
387 cd03031 GRX_GRX_like Glutaredo 86.4 1.6 3.4E-05 34.4 4.9 49 194-250 2-66 (147)
388 TIGR03140 AhpF alkyl hydropero 86.4 5.9 0.00013 38.0 9.8 77 190-277 18-94 (515)
389 cd02981 PDI_b_family Protein D 86.0 4.2 9E-05 28.9 6.7 56 84-150 40-96 (97)
390 cd03028 GRX_PICOT_like Glutare 85.6 0.66 1.4E-05 33.1 2.2 28 91-120 38-67 (90)
391 PHA03075 glutaredoxin-like pro 85.0 1.5 3.3E-05 32.5 3.9 29 191-219 2-30 (123)
392 KOG3171|consensus 83.3 0.33 7.1E-06 40.1 -0.3 84 37-151 163-250 (273)
393 PRK10824 glutaredoxin-4; Provi 82.2 1 2.2E-05 33.8 2.1 16 43-58 28-43 (115)
394 COG0695 GrxC Glutaredoxin and 81.2 0.55 1.2E-05 32.7 0.3 15 38-52 4-18 (80)
395 PTZ00253 tryparedoxin peroxida 81.2 1.7 3.8E-05 35.9 3.4 50 102-151 108-163 (199)
396 PF13417 GST_N_3: Glutathione 81.1 10 0.00022 25.5 6.8 71 196-281 1-74 (75)
397 COG1331 Highly conserved prote 81.1 3.4 7.4E-05 40.3 5.6 77 177-256 31-120 (667)
398 cd03060 GST_N_Omega_like GST_N 80.1 3.4 7.5E-05 27.5 4.0 50 195-250 2-54 (71)
399 cd03040 GST_N_mPGES2 GST_N fam 79.8 6.3 0.00014 26.6 5.3 74 194-278 2-76 (77)
400 cd03041 GST_N_2GST_N GST_N fam 78.3 10 0.00022 25.8 6.0 71 194-277 2-76 (77)
401 cd03035 ArsC_Yffb Arsenate Red 78.1 2.2 4.8E-05 31.4 2.7 78 195-286 2-93 (105)
402 cd02977 ArsC_family Arsenate R 77.8 2.2 4.8E-05 31.2 2.7 81 195-284 2-93 (105)
403 cd03023 DsbA_Com1_like DsbA fa 76.4 0.5 1.1E-05 36.8 -1.3 31 238-274 123-153 (154)
404 TIGR02742 TrbC_Ftype type-F co 76.2 13 0.00027 28.6 6.4 51 228-278 55-115 (130)
405 cd03037 GST_N_GRX2 GST_N famil 75.4 5.9 0.00013 26.3 4.1 66 196-275 3-70 (71)
406 cd03013 PRX5_like Peroxiredoxi 74.9 6.5 0.00014 31.1 4.8 45 190-234 30-75 (155)
407 KOG2507|consensus 74.8 21 0.00046 32.9 8.3 87 188-276 16-109 (506)
408 COG2761 FrnE Predicted dithiol 73.0 6.9 0.00015 33.0 4.6 45 238-287 178-222 (225)
409 cd03036 ArsC_like Arsenate Red 72.6 3.7 8E-05 30.5 2.7 84 195-287 2-97 (111)
410 cd03066 PDI_b_Calsequestrin_mi 72.1 25 0.00055 25.4 7.1 62 80-151 38-100 (102)
411 PF13743 Thioredoxin_5: Thiore 71.9 5.9 0.00013 32.1 4.0 27 196-222 2-28 (176)
412 PRK01655 spxA transcriptional 71.4 4.8 0.0001 30.9 3.2 22 194-215 2-23 (131)
413 COG4545 Glutaredoxin-related p 71.0 6.9 0.00015 26.7 3.3 23 195-217 5-27 (85)
414 PF13743 Thioredoxin_5: Thiore 70.4 4.1 9E-05 33.0 2.8 21 104-126 137-157 (176)
415 PF06053 DUF929: Domain of unk 69.8 21 0.00046 30.7 6.9 69 174-253 46-114 (249)
416 cd00570 GST_N_family Glutathio 67.6 19 0.00042 22.8 5.3 50 195-250 2-55 (71)
417 PRK12759 bifunctional gluaredo 67.3 1.5 3.3E-05 40.7 -0.4 16 37-52 4-19 (410)
418 COG1225 Bcp Peroxiredoxin [Pos 67.0 63 0.0014 25.7 9.0 87 190-277 30-155 (157)
419 cd03051 GST_N_GTT2_like GST_N 65.8 10 0.00022 25.0 3.6 50 195-250 2-57 (74)
420 PRK11657 dsbG disulfide isomer 65.5 15 0.00033 31.6 5.4 42 102-148 207-248 (251)
421 PRK12559 transcriptional regul 65.5 7.6 0.00017 29.8 3.2 22 194-215 2-23 (131)
422 TIGR01617 arsC_related transcr 65.1 6.3 0.00014 29.5 2.7 82 195-285 2-95 (117)
423 cd03019 DsbA_DsbA DsbA family, 65.0 1.5 3.2E-05 35.2 -0.9 25 34-58 16-40 (178)
424 cd03032 ArsC_Spx Arsenate Redu 64.6 8.3 0.00018 28.7 3.2 83 194-285 2-94 (115)
425 COG2761 FrnE Predicted dithiol 63.7 18 0.00039 30.5 5.3 47 104-159 174-220 (225)
426 cd03059 GST_N_SspA GST_N famil 61.6 9 0.0002 25.4 2.7 67 195-276 2-71 (73)
427 COG1651 DsbG Protein-disulfide 61.4 25 0.00054 29.9 6.0 43 191-234 85-127 (244)
428 PRK10954 periplasmic protein d 58.8 3.2 6.9E-05 34.6 0.0 19 37-55 41-59 (207)
429 PRK13344 spxA transcriptional 58.8 12 0.00025 28.9 3.1 22 194-215 2-23 (132)
430 PF09673 TrbC_Ftype: Type-F co 58.6 31 0.00068 25.7 5.3 45 207-253 36-80 (113)
431 COG3019 Predicted metal-bindin 58.4 86 0.0019 24.4 8.4 73 192-278 26-104 (149)
432 cd03045 GST_N_Delta_Epsilon GS 57.1 15 0.00032 24.4 3.2 50 195-250 2-57 (74)
433 PF11009 DUF2847: Protein of u 54.2 36 0.00078 25.0 4.9 39 89-128 50-90 (105)
434 cd02978 KaiB_like KaiB-like fa 53.8 56 0.0012 22.2 5.4 60 193-253 3-64 (72)
435 cd03033 ArsC_15kD Arsenate Red 53.2 17 0.00038 27.0 3.2 22 194-215 2-23 (113)
436 COG3531 Predicted protein-disu 53.2 38 0.00082 28.0 5.3 46 102-152 162-209 (212)
437 cd03069 PDI_b_ERp57 PDIb famil 50.6 83 0.0018 22.7 6.5 60 80-151 37-103 (104)
438 PF13462 Thioredoxin_4: Thiore 49.9 35 0.00077 26.5 4.8 37 104-150 126-162 (162)
439 COG3019 Predicted metal-bindin 48.8 11 0.00024 29.1 1.5 50 91-151 51-103 (149)
440 COG1393 ArsC Arsenate reductas 48.7 22 0.00047 26.8 3.1 26 194-219 3-28 (117)
441 PF02966 DIM1: Mitosis protein 48.3 9.8 0.00021 29.1 1.2 91 34-154 21-119 (133)
442 PF01323 DSBA: DSBA-like thior 48.3 27 0.00059 28.1 4.0 37 193-230 1-37 (193)
443 cd02978 KaiB_like KaiB-like fa 48.0 21 0.00046 24.3 2.6 41 77-123 22-62 (72)
444 PF01323 DSBA: DSBA-like thior 47.7 32 0.00068 27.7 4.3 32 238-274 161-192 (193)
445 cd03025 DsbA_FrnE_like DsbA fa 47.3 31 0.00068 27.8 4.2 27 194-220 3-29 (193)
446 cd03055 GST_N_Omega GST_N fami 45.8 32 0.00069 24.0 3.5 52 193-250 18-72 (89)
447 KOG3170|consensus 45.7 6.6 0.00014 32.3 -0.1 87 32-151 109-200 (240)
448 PF04592 SelP_N: Selenoprotein 45.5 41 0.0009 28.5 4.5 49 187-235 23-73 (238)
449 COG3634 AhpF Alkyl hydroperoxi 45.1 2E+02 0.0043 26.4 8.8 138 116-281 60-201 (520)
450 PF11287 DUF3088: Protein of u 44.9 19 0.00042 26.7 2.2 40 85-125 38-77 (112)
451 cd03074 PDI_b'_Calsequestrin_C 44.3 1.1E+02 0.0024 22.7 6.0 69 81-152 45-120 (120)
452 PF02630 SCO1-SenC: SCO1/SenC; 44.2 63 0.0014 26.0 5.4 45 189-233 51-97 (174)
453 PF06953 ArsD: Arsenical resis 42.8 41 0.00088 25.6 3.8 70 208-282 22-106 (123)
454 cd03068 PDI_b_ERp72 PDIb famil 39.6 1.3E+02 0.0029 21.9 6.1 64 78-150 36-106 (107)
455 COG1331 Highly conserved prote 39.0 8.4 0.00018 37.7 -0.5 78 26-128 36-120 (667)
456 cd03034 ArsC_ArsC Arsenate Red 38.8 32 0.00069 25.5 2.7 80 195-286 2-94 (112)
457 TIGR00014 arsC arsenate reduct 37.6 34 0.00074 25.4 2.7 79 195-285 2-94 (114)
458 cd02990 UAS_FAF1 UAS family, F 37.4 1.9E+02 0.0042 22.3 10.2 85 189-276 20-131 (136)
459 KOG2792|consensus 36.5 2.4E+02 0.0051 24.5 7.7 88 190-278 139-275 (280)
460 COG1999 Uncharacterized protei 36.0 1.3E+02 0.0028 25.1 6.1 48 189-236 66-118 (207)
461 TIGR02654 circ_KaiB circadian 35.1 42 0.0009 23.8 2.6 34 88-125 33-66 (87)
462 COG0278 Glutaredoxin-related p 34.5 17 0.00036 26.5 0.5 35 89-126 44-79 (105)
463 cd03031 GRX_GRX_like Glutaredo 33.1 19 0.00041 28.3 0.7 31 91-121 31-65 (147)
464 cd03024 DsbA_FrnE DsbA family, 32.8 50 0.0011 26.8 3.2 33 238-275 169-201 (201)
465 cd03056 GST_N_4 GST_N family, 32.4 59 0.0013 21.1 3.1 50 195-250 2-57 (73)
466 PRK10853 putative reductase; P 31.8 52 0.0011 24.7 2.9 22 194-215 2-23 (118)
467 TIGR01616 nitro_assoc nitrogen 31.4 65 0.0014 24.5 3.4 23 193-215 2-24 (126)
468 PF04551 GcpE: GcpE protein; 31.4 47 0.001 30.1 2.9 76 201-277 270-358 (359)
469 PRK09301 circadian clock prote 31.2 52 0.0011 24.1 2.6 41 88-133 36-76 (103)
470 KOG2868|consensus 30.9 1.3E+02 0.0029 26.8 5.5 65 208-277 23-89 (335)
471 PF08806 Sep15_SelM: Sep15/Sel 30.7 69 0.0015 22.1 3.1 34 244-278 41-76 (78)
472 PRK09301 circadian clock prote 29.4 1.7E+02 0.0037 21.4 5.0 80 190-272 5-87 (103)
473 PRK10026 arsenate reductase; P 29.3 68 0.0015 25.0 3.2 22 194-215 4-25 (141)
474 TIGR02654 circ_KaiB circadian 28.9 1.9E+02 0.0041 20.5 5.0 71 192-265 4-76 (87)
475 COG0821 gcpE 1-hydroxy-2-methy 25.2 1.1E+02 0.0024 27.6 4.0 78 201-279 263-352 (361)
476 PF03960 ArsC: ArsC family; I 23.8 72 0.0016 23.3 2.4 76 197-280 1-86 (110)
477 PF09862 DUF2089: Protein of u 23.7 73 0.0016 23.8 2.3 17 102-121 51-67 (113)
478 cd03025 DsbA_FrnE_like DsbA fa 23.2 93 0.002 25.0 3.2 22 104-127 159-180 (193)
479 cd03070 PDI_b_ERp44 PDIb famil 22.2 3E+02 0.0065 19.6 7.9 69 188-265 14-84 (91)
480 PRK09481 sspA stringent starva 21.8 3.7E+02 0.0081 21.9 6.6 76 190-280 7-85 (211)
481 COG3531 Predicted protein-disu 21.7 86 0.0019 26.0 2.5 26 193-218 3-28 (212)
482 cd03061 GST_N_CLIC GST_N famil 21.5 3.1E+02 0.0067 19.5 5.3 66 200-280 20-88 (91)
483 COG3411 Ferredoxin [Energy pro 21.4 2.1E+02 0.0045 19.0 3.8 35 244-283 16-50 (64)
484 cd03049 GST_N_3 GST_N family, 21.4 1.6E+02 0.0035 19.1 3.6 52 195-250 2-56 (73)
485 PRK00366 ispG 4-hydroxy-3-meth 20.3 1.3E+02 0.0029 27.3 3.7 75 201-276 270-355 (360)
No 1
>KOG0190|consensus
Probab=100.00 E-value=3.9e-36 Score=272.62 Aligned_cols=269 Identities=34% Similarity=0.615 Sum_probs=221.2
Q ss_pred CCeEEEEe-eccCceecCCCCCCCChhHHHHHhhhhhcCcccccccc-cceeeeecccccccCCCCCc-chhhhhhhH-H
Q psy7938 6 VPSLRLIR-LEEDMAKYKPATPEINVDTVRSFVTEFLAGNLKHSKFK-KNLYIHLEEDMAKYKPASPE-INVDTVRSF-V 81 (305)
Q Consensus 6 ~p~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~iv~f~a~wc~~c~~~-~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~ 81 (305)
++.+.|.+ +|+....| +++.+.+.+..||.....|.+++-... .+.+-..............+ -..+++.+- .
T Consensus 202 ~~~i~l~kk~d~~~~~~---~~~~~~~~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 278 (493)
T KOG0190|consen 202 TFPIVLFKKFDELLVKY---DGSFTPELLKKFIQENSLPLVTEFTVANNAKIYSSFVKLGLDFFVFFKCNRFEELRKKFE 278 (493)
T ss_pred cceEEeccccccchhhc---ccccCHHHHHHHHHHhcccccceecccccceeeccccccceeEEeccccccHHHHHHHHH
Confidence 56688888 68888888 677777779999999999999988653 22222221122111111222 133444444 3
Q ss_pred HHHhhcCceEEEEEEeCCchhHHHHHHHcCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHHHcCccccccc
Q psy7938 82 TEFLAGNLKVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFLAGNLKQHLL 161 (305)
Q Consensus 82 ~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~~~~~~~~~~~ 161 (305)
.-+.++++++.|+.+|.. ++.+.++.||+..++.| +.+.-......+|.++.+..+.+.|..|+.+++.|+++++++
T Consensus 279 ~vAk~f~~~l~Fi~~d~e--~~~~~~~~~Gl~~~~~~-~~~v~~~~~~~Ky~~~~e~~~~~~ie~f~~~~l~Gk~~p~~k 355 (493)
T KOG0190|consen 279 EVAKKFKGKLRFILIDPE--SFARVLEFFGLEEEQLP-IRAVILNEDGSKYPLEEEELDQENIESFVKDFLDGKVKPHLK 355 (493)
T ss_pred HHHHhcccceEEEEEChH--HhhHHHHhcCcccccCC-eeEEeeccccccccCccccccHHHHHHHHHHHhcCccccccc
Confidence 344788899999999766 88889999999877778 444443445589988767788889999999999999999999
Q ss_pred CCCCCCccccCCcEEecccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccccccCC
Q psy7938 162 SQPLPEDWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTK 241 (305)
Q Consensus 162 s~~~p~~~~~~~v~~l~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~~~~~ 241 (305)
|+++|++|+.++|+.|++++|++++++.+++|||.|||||||||+++.|.|++||+.+++.+++++++||++.|+.....
T Consensus 356 SqpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~~~~~ 435 (493)
T KOG0190|consen 356 SQPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDVPSLK 435 (493)
T ss_pred cCCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccCcccc
Confidence 99999998778999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred cccccEEEEEeCCCce-EEeeeCCCCHHHHHHHHHhcCCC
Q psy7938 242 ITSFPTLKLYAKDDNR-VIDYNGERVLEALSNFVESGGKE 280 (305)
Q Consensus 242 i~~~Ptl~~f~~g~~~-~~~~~g~~~~~~l~~fi~~~~~~ 280 (305)
+++||||++|++|.+. ++.|.|.++.+.|..||.+++..
T Consensus 436 ~~~fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~a~~ 475 (493)
T KOG0190|consen 436 VDGFPTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKSATE 475 (493)
T ss_pred ccccceEEEecCCCCCCCcccCCCcchHHHHhhhccCCCc
Confidence 9999999999999865 99999999999999999999873
No 2
>PTZ00102 disulphide isomerase; Provisional
Probab=99.96 E-value=5.8e-28 Score=227.75 Aligned_cols=263 Identities=28% Similarity=0.486 Sum_probs=198.9
Q ss_pred CCCeEEEEeeccCceecCCCCCCCChhHHHHHhhhhhcCccccccccc-ceeeeecccccccCCCCCcchhhhhhhH-HH
Q psy7938 5 EVPSLRLIRLEEDMAKYKPATPEINVDTVRSFVTEFLAGNLKHSKFKK-NLYIHLEEDMAKYKPASPEINVDTVRSF-VT 82 (305)
Q Consensus 5 ~~p~i~l~~~~~~~~~~~~~~~~~~~~~~~~~iv~f~a~wc~~c~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 82 (305)
..+.+.+||.++....+ ....+.+++..||.....|..+.-..-. ..+......+.-+.. .+.+.+.+.+. ..
T Consensus 197 ~~~~~~~~~~~~~~~~~---~~~~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 271 (477)
T PTZ00102 197 GKNKIYVLHKDEEGVEL---FMGKTKEELEEFVSTESFPLFAEINAENYRRYISSGKDLVWFCG--TTEDYDKYKSVVRK 271 (477)
T ss_pred CCCcEEEEecCCCCccc---CCCCCHHHHHHHHHHcCCCceeecCccchHHHhcCCccEEEEec--CHHHHHHHHHHHHH
Confidence 45678888864443333 1123678899999876666555432110 000000001111111 11122233333 33
Q ss_pred HHhhcCceEEEEEEeCCchhHHH-HHHHcCCCCCCCCeEEEEecCcCceeccCCC---CCCCHHHHHHHHHHHHcCcccc
Q psy7938 83 EFLAGNLKVLFVTINTDEEDHQK-ILEFFGMSKDEVPSLRLIRLEEDMAKYKPAT---PEISVDTVRSFVTEFLAGNLKQ 158 (305)
Q Consensus 83 ~~~~~~~~v~~~~vd~~~~~~~~-l~~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~---~~~~~~~l~~fv~~~~~~~~~~ 158 (305)
-++++++++.|+.+|++ ++.. +++.+|+. .+|++++.... .+|.+.. +.++.++|.+|+.++.+|++++
T Consensus 272 ~A~~~~~~~~f~~vd~~--~~~~~~~~~~gi~--~~P~~~i~~~~---~~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~ 344 (477)
T PTZ00102 272 VARKLREKYAFVWLDTE--QFGSHAKEHLLIE--EFPGLAYQSPA---GRYLLPPAKESFDSVEALIEFFKDVEAGKVEK 344 (477)
T ss_pred HHHhccCceEEEEEech--hcchhHHHhcCcc--cCceEEEEcCC---cccCCCccccccCCHHHHHHHHHHHhCCCCCc
Confidence 44677899999999999 6664 89999998 89998887643 2454431 2378999999999999999999
Q ss_pred cccCCCCCCccccCCcEEecccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc-
Q psy7938 159 HLLSQPLPEDWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL- 237 (305)
Q Consensus 159 ~~~s~~~p~~~~~~~v~~l~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~- 237 (305)
.++|+++|+. +.+.|..|++++|++.+.+++++++|.||++||++|+.+.|.|+++|..+++.+.+.++.+|++.++.
T Consensus 345 ~~~se~~p~~-~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~ 423 (477)
T PTZ00102 345 SIKSEPIPEE-QDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETP 423 (477)
T ss_pred ccccCCCCCC-CCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccc
Confidence 9999999987 67789999999999998888999999999999999999999999999999776789999999998876
Q ss_pred -ccCCcccccEEEEEeCCCceEEeeeCCCCHHHHHHHHHhcCCC
Q psy7938 238 -EHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVESGGKE 280 (305)
Q Consensus 238 -~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~~~~l~~fi~~~~~~ 280 (305)
..++++++||+++|++|++.+..|.|.++.+.|.+||.++...
T Consensus 424 ~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 424 LEEFSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred hhcCCCcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCC
Confidence 7899999999999999987678999999999999999999865
No 3
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.96 E-value=2.1e-27 Score=222.88 Aligned_cols=271 Identities=34% Similarity=0.569 Sum_probs=207.0
Q ss_pred CCeEEEEee-ccCc--eecCCCCCCCChhHHHHHhhhhhcCccccccccc-ceeeeecccccccCCCC--Ccchhhhhhh
Q psy7938 6 VPSLRLIRL-EEDM--AKYKPATPEINVDTVRSFVTEFLAGNLKHSKFKK-NLYIHLEEDMAKYKPAS--PEINVDTVRS 79 (305)
Q Consensus 6 ~p~i~l~~~-~~~~--~~~~~~~~~~~~~~~~~~iv~f~a~wc~~c~~~~-p~~~~~~~~~~~~~~~~--~~~~~~~~~~ 79 (305)
.+.+.+++. +... ..|.. .++.+.+.+..||.....|++....... ..+.... .+..+.-.. .....+.+.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~ 255 (462)
T TIGR01130 178 PDSVVLFKPKDEDEKFSKVDG-EMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESG-PLVVLYYNVDESLDPFEELRN 255 (462)
T ss_pred CCcEEEecccccccccccccC-cccCCHHHHHHHHHHcCCCceEeeCCcchhhHhCCC-CceeEEEEecCCchHHHHHHH
Confidence 467777775 3222 23421 1223457899999999999888774331 0011111 111111111 1111233433
Q ss_pred HHHH-HhhcCc-eEEEEEEeCCchhHHHHHHHcCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHHHcCccc
Q psy7938 80 FVTE-FLAGNL-KVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFLAGNLK 157 (305)
Q Consensus 80 ~~~~-~~~~~~-~v~~~~vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~~~~~~~ 157 (305)
.+.. +.++++ .+.|+.+|+. ++..+++.+|+....+|++++++..+. .+|.+..+.++.++|.+|+.++++|+++
T Consensus 256 ~~~~~a~~~~~~~i~f~~~d~~--~~~~~~~~~~~~~~~~P~~vi~~~~~~-~~y~~~~~~~~~~~i~~fi~~~~~g~~~ 332 (462)
T TIGR01130 256 RFLEAAKKFRGKFVNFAVADEE--DFGRELEYFGLKAEKFPAVAIQDLEGN-KKYPMDQEEFSSENLEAFVKDFLDGKLK 332 (462)
T ss_pred HHHHHHHHCCCCeEEEEEecHH--HhHHHHHHcCCCccCCceEEEEeCCcc-cccCCCcCCCCHHHHHHHHHHHhcCCCC
Confidence 3332 356665 8999999999 889999999997667999999986642 4676654478999999999999999999
Q ss_pred ccccCCCCCCccccCCcEEecccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCC-CCceEEEEEeCCccc
Q psy7938 158 QHLLSQPLPEDWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFAD-RDDITIAKIDATVNE 236 (305)
Q Consensus 158 ~~~~s~~~p~~~~~~~v~~l~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~-~~~v~~~~id~~~~~ 236 (305)
+.++|+++|+. ..+.|..|++++|.+.+.+++++++|.||++||++|+.+.|.++++++.+++ ...+.++++|++.++
T Consensus 333 ~~~~se~~p~~-~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~ 411 (462)
T TIGR01130 333 PYLKSEPIPED-DEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND 411 (462)
T ss_pred eeeccCCCCcc-CCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc
Confidence 99999999987 6677999999999999988899999999999999999999999999999976 337999999999998
Q ss_pred cccCCcccccEEEEEeCCCc-eEEeeeCCCCHHHHHHHHHhcCCCCC
Q psy7938 237 LEHTKITSFPTLKLYAKDDN-RVIDYNGERVLEALSNFVESGGKEGG 282 (305)
Q Consensus 237 ~~~~~i~~~Ptl~~f~~g~~-~~~~~~g~~~~~~l~~fi~~~~~~~~ 282 (305)
...+++.++||+++|++|++ .+..|.|..+.+.|.+||.++++.+-
T Consensus 412 ~~~~~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~ 458 (462)
T TIGR01130 412 VPPFEVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATFPL 458 (462)
T ss_pred cCCCCccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCCCCC
Confidence 85599999999999999877 37899999999999999999986543
No 4
>KOG0191|consensus
Probab=99.96 E-value=1.7e-28 Score=224.41 Aligned_cols=212 Identities=30% Similarity=0.533 Sum_probs=179.2
Q ss_pred CChhHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHH
Q psy7938 28 INVDTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKIL 107 (305)
Q Consensus 28 ~~~~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~ 107 (305)
........+++.||+|||+||+.+.|.|.+++ ..+++++.++.|||+ ++..+|
T Consensus 42 ~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~-------------------------~~l~~~~~~~~vd~~--~~~~~~ 94 (383)
T KOG0191|consen 42 FLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLA-------------------------KALKGKVKIGAVDCD--EHKDLC 94 (383)
T ss_pred HhhccCCceEEEEECCCCcchhhhchHHHHHH-------------------------HHhcCceEEEEeCch--hhHHHH
Confidence 34466788999999999999999998888773 344578999999999 999999
Q ss_pred HHcCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHHHcCcccccccCCCCCCccccCCcEEecccChhHHHh
Q psy7938 108 EFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFLAGNLKQHLLSQPLPEDWDKNAVKVLVASNFDEIAF 187 (305)
Q Consensus 108 ~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~~~~~~~~~~~s~~~p~~~~~~~v~~l~~~~f~~~v~ 187 (305)
++|+|. ++||+.+|..+.....| .+..+.+.+.+|+...+.......... .|..++..+|...+.
T Consensus 95 ~~y~i~--gfPtl~~f~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~v~~l~~~~~~~~~~ 159 (383)
T KOG0191|consen 95 EKYGIQ--GFPTLKVFRPGKKPIDY---SGPRNAESLAEFLIKELEPSVKKLVEG----------EVFELTKDNFDETVK 159 (383)
T ss_pred HhcCCc--cCcEEEEEcCCCceeec---cCcccHHHHHHHHHHhhccccccccCC----------ceEEccccchhhhhh
Confidence 999998 99999999988333444 367899999999999876543332111 389999999999998
Q ss_pred cCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEEEeCCCceEEeeeCCC
Q psy7938 188 DKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLYAKDDNRVIDYNGER 265 (305)
Q Consensus 188 ~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f~~g~~~~~~~~g~~ 265 (305)
+.+.+++|.||+|||++|+.+.|.|++++..+.....+.++.+|++.... ..++|.++||+++|++|.+-...|.|.+
T Consensus 160 ~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R 239 (383)
T KOG0191|consen 160 DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLR 239 (383)
T ss_pred ccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCcccccccccc
Confidence 99999999999999999999999999999999766789999999985443 8999999999999999866356678899
Q ss_pred CHHHHHHHHHhcCCCC
Q psy7938 266 VLEALSNFVESGGKEG 281 (305)
Q Consensus 266 ~~~~l~~fi~~~~~~~ 281 (305)
+.+.+.+|+.+.....
T Consensus 240 ~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 240 DSDSIVSFVEKKERRN 255 (383)
T ss_pred cHHHHHHHHHhhcCCC
Confidence 9999999999987764
No 5
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.92 E-value=5.5e-25 Score=185.66 Aligned_cols=184 Identities=16% Similarity=0.188 Sum_probs=137.4
Q ss_pred hhhhhc---CcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCc-eEEEEEEeCCchhHHHHHHHcCC
Q psy7938 37 VTEFLA---GNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNL-KVLFVTINTDEEDHQKILEFFGM 112 (305)
Q Consensus 37 iv~f~a---~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~~~l~~~~~I 112 (305)
|+-|++ +||++|+.+.|++.+++... .+ .+.++.+|.+ ++++++++|+|
T Consensus 23 i~~f~~~~a~wC~~C~~~~p~l~~la~~~-------------------------~~~~i~~v~vd~~--~~~~l~~~~~V 75 (215)
T TIGR02187 23 IVVFTDNDKEGCQYCKETEQLLEELSEVS-------------------------PKLKLEIYDFDTP--EDKEEAEKYGV 75 (215)
T ss_pred EEEEcCCCCCCCCchHHHHHHHHHHHhhC-------------------------CCceEEEEecCCc--ccHHHHHHcCC
Confidence 334777 99999999999998883333 11 3556666666 88999999999
Q ss_pred CCCCCCeEEEEecCcCc-eeccCCCCCCCHHHHHHHHHHHHcCcccccccCCCCCCccccCCcEEecccChhHHHhcCCC
Q psy7938 113 SKDEVPSLRLIRLEEDM-AKYKPATPEISVDTVRSFVTEFLAGNLKQHLLSQPLPEDWDKNAVKVLVASNFDEIAFDKSK 191 (305)
Q Consensus 113 ~~~~~Ptl~~~~~~~~~-~~~~~~~~~~~~~~l~~fv~~~~~~~~~~~~~s~~~p~~~~~~~v~~l~~~~f~~~v~~~~~ 191 (305)
. ++||+++|+.|... .++. |..+.+++.+|++..+.-... ...++..+.+. +...++
T Consensus 76 ~--~~Pt~~~f~~g~~~~~~~~---G~~~~~~l~~~i~~~~~~~~~----------------~~~L~~~~~~~-l~~~~~ 133 (215)
T TIGR02187 76 E--RVPTTIILEEGKDGGIRYT---GIPAGYEFAALIEDIVRVSQG----------------EPGLSEKTVEL-LQSLDE 133 (215)
T ss_pred C--ccCEEEEEeCCeeeEEEEe---ecCCHHHHHHHHHHHHHhcCC----------------CCCCCHHHHHH-HHhcCC
Confidence 8 99999999988764 2553 567778899999987531100 11222223333 223344
Q ss_pred c-EEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEEEeCCCceEEeeeCCCCHH
Q psy7938 192 H-VLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLYAKDDNRVIDYNGERVLE 268 (305)
Q Consensus 192 ~-~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~~~ 268 (305)
+ .++.||++||++|+.+.+.+++++... +++.+..+|.+.+.. .+++|.++||++++++|. .+.|....+
T Consensus 134 pv~I~~F~a~~C~~C~~~~~~l~~l~~~~---~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~----~~~G~~~~~ 206 (215)
T TIGR02187 134 PVRIEVFVTPTCPYCPYAVLMAHKFALAN---DKILGEMIEANENPDLAEKYGVMSVPKIVINKGVE----EFVGAYPEE 206 (215)
T ss_pred CcEEEEEECCCCCCcHHHHHHHHHHHHhc---CceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE----EEECCCCHH
Confidence 4 555599999999999999999999874 478888999888775 899999999999987652 289999999
Q ss_pred HHHHHHHh
Q psy7938 269 ALSNFVES 276 (305)
Q Consensus 269 ~l~~fi~~ 276 (305)
.|.+||.+
T Consensus 207 ~l~~~l~~ 214 (215)
T TIGR02187 207 QFLEYILS 214 (215)
T ss_pred HHHHHHHh
Confidence 99999875
No 6
>KOG0190|consensus
Probab=99.86 E-value=1.3e-21 Score=178.17 Aligned_cols=210 Identities=17% Similarity=0.254 Sum_probs=157.5
Q ss_pred ccCceecCCCCCCCChhHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEE
Q psy7938 15 EEDMAKYKPATPEINVDTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFV 94 (305)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 94 (305)
++.++.++.++|+..+.+..-.+|.|||||||||+.++|-|.+.+..++. ....|.++
T Consensus 24 ~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke----------------------~~s~i~La 81 (493)
T KOG0190|consen 24 EEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKE----------------------EGSPVKLA 81 (493)
T ss_pred ccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhc----------------------cCCCceeE
Confidence 56789999889999999888889999999999999999999999888743 23579999
Q ss_pred EEeCCchhHHHHHHHcCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHHHcCcccccccCCCCCCccccCCc
Q psy7938 95 TINTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFLAGNLKQHLLSQPLPEDWDKNAV 174 (305)
Q Consensus 95 ~vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~~~~~~~~~~~s~~~p~~~~~~~v 174 (305)
+|||+ ++..+|++|+|+ +|||+.+|++|.....| +|+++.+.|..|+..... ..+
T Consensus 82 kVDat--~~~~~~~~y~v~--gyPTlkiFrnG~~~~~Y---~G~r~adgIv~wl~kq~g------------------Pa~ 136 (493)
T KOG0190|consen 82 KVDAT--EESDLASKYEVR--GYPTLKIFRNGRSAQDY---NGPREADGIVKWLKKQSG------------------PAS 136 (493)
T ss_pred Eeecc--hhhhhHhhhcCC--CCCeEEEEecCCcceec---cCcccHHHHHHHHHhccC------------------CCc
Confidence 99999 779999999998 99999999999754677 589999999999999843 224
Q ss_pred EEecc-cChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccccccCCc--ccccEEEEE
Q psy7938 175 KVLVA-SNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKI--TSFPTLKLY 251 (305)
Q Consensus 175 ~~l~~-~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~~~~~i--~~~Ptl~~f 251 (305)
..|.. +....++ ..+..++|-|+..--+. ...+...|..+. +++.|+. -.+..-...++. .+.|-++++
T Consensus 137 ~~l~~~~~a~~~l-~~~~~~vig~F~d~~~~----~~~~~~~a~~l~--~d~~F~~-ts~~~~~~~~~~~~~~~~~i~l~ 208 (493)
T KOG0190|consen 137 KTLKTVDEAEEFL-SKKDVVVIGFFKDLESL----AESFFDAASKLR--DDYKFAH-TSDSDVAKKLELNTEGTFPIVLF 208 (493)
T ss_pred eecccHHHHHhhc-cCCceEEEEEecccccc----hHHHHHHHHhcc--ccceeec-cCcHhHHhhccCCCCCcceEEec
Confidence 55543 4455544 44566777777654333 234445555553 4677772 222222233333 347778888
Q ss_pred eCCCceEEeeeCCCCHHHHHHHHHhcCC
Q psy7938 252 AKDDNRVIDYNGERVLEALSNFVESGGK 279 (305)
Q Consensus 252 ~~g~~~~~~~~g~~~~~~l~~fi~~~~~ 279 (305)
++.......|.|..+.+.|.+||..+.-
T Consensus 209 kk~d~~~~~~~~~~~~~~l~~Fi~~~~~ 236 (493)
T KOG0190|consen 209 KKFDELLVKYDGSFTPELLKKFIQENSL 236 (493)
T ss_pred cccccchhhcccccCHHHHHHHHHHhcc
Confidence 8876656777899999999999998763
No 7
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.86 E-value=5.9e-21 Score=143.66 Aligned_cols=102 Identities=20% Similarity=0.416 Sum_probs=90.8
Q ss_pred ccCCcEEecccChhHHH--hcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc--c-ccCCccc
Q psy7938 170 DKNAVKVLVASNFDEIA--FDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE--L-EHTKITS 244 (305)
Q Consensus 170 ~~~~v~~l~~~~f~~~v--~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~--~-~~~~i~~ 244 (305)
..+.|..|+..+|++.+ .+.++.++|.|||+||++|+.+.|.|+++|+.+++ .+.+++|||+.+. + ++++|.+
T Consensus 7 ~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~--~v~~~~Vd~d~~~~l~~~~~~I~~ 84 (113)
T cd03006 7 QRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD--QVLFVAINCWWPQGKCRKQKHFFY 84 (113)
T ss_pred CCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEECCCChHHHHHhcCCcc
Confidence 44569999999999974 47889999999999999999999999999999953 6999999999876 3 4799999
Q ss_pred ccEEEEEeCCCceEEeeeCCCCHHHHHHHH
Q psy7938 245 FPTLKLYAKDDNRVIDYNGERVLEALSNFV 274 (305)
Q Consensus 245 ~Ptl~~f~~g~~~~~~~~g~~~~~~l~~fi 274 (305)
+||+++|++|+. +..|.|.++.+.|..|+
T Consensus 85 ~PTl~lf~~g~~-~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 85 FPVIHLYYRSRG-PIEYKGPMRAPYMEKFV 113 (113)
T ss_pred cCEEEEEECCcc-ceEEeCCCCHHHHHhhC
Confidence 999999998865 89999999999999874
No 8
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.83 E-value=6.8e-20 Score=136.31 Aligned_cols=101 Identities=37% Similarity=0.707 Sum_probs=93.6
Q ss_pred cEEecccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEEE
Q psy7938 174 VKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLY 251 (305)
Q Consensus 174 v~~l~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f 251 (305)
|..++.++|++.+.+++++++|.||++||++|+.+.|.|.++++.+.+ ++.++.+|++.+.. ++++|+++||+++|
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 78 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCDENKELCKKYGVKSVPTIIFF 78 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTSHHHHHHTTCSSSSEEEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc--ccccchhhhhccchhhhccCCCCCCEEEEE
Confidence 578899999999977789999999999999999999999999999965 89999999998864 89999999999999
Q ss_pred eCCCceEEeeeCCCCHHHHHHHHHhc
Q psy7938 252 AKDDNRVIDYNGERVLEALSNFVESG 277 (305)
Q Consensus 252 ~~g~~~~~~~~g~~~~~~l~~fi~~~ 277 (305)
++|+. ..+|.|..+.+.|.+||++|
T Consensus 79 ~~g~~-~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 79 KNGKE-VKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp ETTEE-EEEEESSSSHHHHHHHHHHH
T ss_pred ECCcE-EEEEECCCCHHHHHHHHHcC
Confidence 99876 67999999999999999975
No 9
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.83 E-value=2.8e-20 Score=138.95 Aligned_cols=100 Identities=28% Similarity=0.672 Sum_probs=90.3
Q ss_pred CcEEecccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEE
Q psy7938 173 AVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKL 250 (305)
Q Consensus 173 ~v~~l~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~ 250 (305)
.|..++.++|++.+.+++++++|.||++||++|+.+.|.|++++..+. +.+.++++|++.+.. ++++|.++||+++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALK--GKVKVGSVDCQKYESLCQQANIRAYPTIRL 79 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 378899999999998888899999999999999999999999999994 469999999998775 7899999999999
Q ss_pred EeCCCceEEeeeCCCC-HHHHHHHH
Q psy7938 251 YAKDDNRVIDYNGERV-LEALSNFV 274 (305)
Q Consensus 251 f~~g~~~~~~~~g~~~-~~~l~~fi 274 (305)
|++|++.+.+|.|..+ .+.|.+||
T Consensus 80 ~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 80 YPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EcCCCCCceEccCCCCCHHHHHhhC
Confidence 9998555899999887 99999885
No 10
>KOG4277|consensus
Probab=99.83 E-value=3.9e-20 Score=155.49 Aligned_cols=187 Identities=14% Similarity=0.263 Sum_probs=133.8
Q ss_pred hHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHc
Q psy7938 31 DTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFF 110 (305)
Q Consensus 31 ~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~ 110 (305)
+....|+|+||||||+||+.+.|+|.+.+..++. -...|.++++||+ .++.++++|
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkd----------------------ig~PikVGKlDaT--~f~aiAnef 96 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKD----------------------IGLPIKVGKLDAT--RFPAIANEF 96 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhh----------------------cCCceeecccccc--cchhhHhhh
Confidence 4456799999999999999999999999888843 3467999999999 899999999
Q ss_pred CCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHHHcCcccccccCCCCCCccccCCcEEecc--cChhHHHhc
Q psy7938 111 GMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFLAGNLKQHLLSQPLPEDWDKNAVKVLVA--SNFDEIAFD 188 (305)
Q Consensus 111 ~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~~~~~~~~~~~s~~~p~~~~~~~v~~l~~--~~f~~~v~~ 188 (305)
||+ +|||+.+|+.+.. ..| .|+++.++|.+|..+..+. -+..+++ ..|.+ +..
T Consensus 97 giq--GYPTIk~~kgd~a-~dY---RG~R~Kd~iieFAhR~a~a------------------iI~pi~enQ~~feh-lq~ 151 (468)
T KOG4277|consen 97 GIQ--GYPTIKFFKGDHA-IDY---RGGREKDAIIEFAHRCAAA------------------IIEPINENQIEFEH-LQA 151 (468)
T ss_pred ccC--CCceEEEecCCee-eec---CCCccHHHHHHHHHhcccc------------------eeeecChhHHHHHH-Hhh
Confidence 998 9999999997643 455 3889999999999988432 1233333 23333 346
Q ss_pred CCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc-c-ccCCcccccEEEEEeCCCceEEeeeCCCC
Q psy7938 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE-L-EHTKITSFPTLKLYAKDDNRVIDYNGERV 266 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~-~-~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~ 266 (305)
...+.+|+|.+.- .|.+.+..+.- ...+.+++.=....+ . ........|.+.+|+.+.- -+.. ..+
T Consensus 152 Rhq~ffVf~Gtge-------~PL~d~fidAA--Se~~~~a~FfSaseeVaPe~~~~kempaV~VFKDetf-~i~d--e~d 219 (468)
T KOG4277|consen 152 RHQPFFVFFGTGE-------GPLFDAFIDAA--SEKFSVARFFSASEEVAPEENDAKEMPAVAVFKDETF-EIED--EGD 219 (468)
T ss_pred ccCceEEEEeCCC-------CcHHHHHHHHh--hhheeeeeeeccccccCCcccchhhccceEEEcccee-EEEe--cCc
Confidence 7788999887543 23444443333 124566655433333 3 5666788999999998733 2333 335
Q ss_pred HHHHHHHHHhcC
Q psy7938 267 LEALSNFVESGG 278 (305)
Q Consensus 267 ~~~l~~fi~~~~ 278 (305)
.+.|..||+...
T Consensus 220 d~dLseWinRER 231 (468)
T KOG4277|consen 220 DEDLSEWINRER 231 (468)
T ss_pred hhHHHHHHhHhh
Confidence 678999999753
No 11
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.82 E-value=1.1e-19 Score=135.50 Aligned_cols=102 Identities=51% Similarity=0.982 Sum_probs=92.6
Q ss_pred CcEEecccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc-ccCCcccccEEEEE
Q psy7938 173 AVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL-EHTKITSFPTLKLY 251 (305)
Q Consensus 173 ~v~~l~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~-~~~~i~~~Ptl~~f 251 (305)
+|.+|++++|++.+.+.+++++|+||++||++|+.+.|.|.++++.+++..++.++++|++.++. ..+++.++||+++|
T Consensus 1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~~~~ 80 (104)
T cd02995 1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTILFF 80 (104)
T ss_pred CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEEEEE
Confidence 37899999999999877899999999999999999999999999999765689999999999876 67889999999999
Q ss_pred eCCC-ceEEeeeCCCCHHHHHHHH
Q psy7938 252 AKDD-NRVIDYNGERVLEALSNFV 274 (305)
Q Consensus 252 ~~g~-~~~~~~~g~~~~~~l~~fi 274 (305)
++|+ ....+|.|..+.+.|.+||
T Consensus 81 ~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 81 PAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred cCCCcCCceEccCCcCHHHHHhhC
Confidence 9987 3378899999999999986
No 12
>KOG0910|consensus
Probab=99.82 E-value=6.5e-20 Score=140.77 Aligned_cols=102 Identities=28% Similarity=0.527 Sum_probs=94.0
Q ss_pred cEEecccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEEE
Q psy7938 174 VKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLY 251 (305)
Q Consensus 174 v~~l~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f 251 (305)
+..++..+|++.+.+++.+|+|+|||+||++|+.+.|.+++++.++. +.+.++++|.+.+.. .+|+|+.+||+++|
T Consensus 45 ~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~--g~~k~~kvdtD~~~ela~~Y~I~avPtvlvf 122 (150)
T KOG0910|consen 45 FNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYA--GKFKLYKVDTDEHPELAEDYEISAVPTVLVF 122 (150)
T ss_pred ccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhc--CeEEEEEEccccccchHhhcceeeeeEEEEE
Confidence 66678899999999999999999999999999999999999999994 589999999998776 89999999999999
Q ss_pred eCCCceEEeeeCCCCHHHHHHHHHhcC
Q psy7938 252 AKDDNRVIDYNGERVLEALSNFVESGG 278 (305)
Q Consensus 252 ~~g~~~~~~~~g~~~~~~l~~fi~~~~ 278 (305)
++|.+ ..++.|..+.+.|.+||++..
T Consensus 123 knGe~-~d~~vG~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 123 KNGEK-VDRFVGAVPKEQLRSLIKKFL 148 (150)
T ss_pred ECCEE-eeeecccCCHHHHHHHHHHHh
Confidence 99976 789999999999999998754
No 13
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.81 E-value=1.2e-19 Score=136.54 Aligned_cols=101 Identities=32% Similarity=0.632 Sum_probs=89.2
Q ss_pred CcEEecccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCC----CceEEEEEeCCcccc--ccCCccccc
Q psy7938 173 AVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADR----DDITIAKIDATVNEL--EHTKITSFP 246 (305)
Q Consensus 173 ~v~~l~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~----~~v~~~~id~~~~~~--~~~~i~~~P 246 (305)
.|..+++++|++.+ +.+++++|.||++||++|+.+.|.|+++++.+++. +.+.++++||+.+.. .+++|+++|
T Consensus 2 ~v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 80 (108)
T cd02996 2 EIVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP 80 (108)
T ss_pred ceEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence 48889999999977 66789999999999999999999999999987532 369999999998765 899999999
Q ss_pred EEEEEeCCCceEEeeeCCCCHHHHHHHH
Q psy7938 247 TLKLYAKDDNRVIDYNGERVLEALSNFV 274 (305)
Q Consensus 247 tl~~f~~g~~~~~~~~g~~~~~~l~~fi 274 (305)
|+++|++|+.....|.|.++.+.|.+||
T Consensus 81 tl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 81 TLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 9999998875468899999999999986
No 14
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.81 E-value=1.5e-19 Score=134.22 Aligned_cols=97 Identities=26% Similarity=0.580 Sum_probs=87.4
Q ss_pred cEEecccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEEE
Q psy7938 174 VKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLY 251 (305)
Q Consensus 174 v~~l~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f 251 (305)
|..|+.++|++.+ ..+++++|.||++||++|+.+.|.|.++|+.+++ .+.|+++||+.+.. ++++|+++||+++|
T Consensus 3 ~~~l~~~~f~~~v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 79 (101)
T cd03003 3 IVTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG--VIRIGAVNCGDDRMLCRSQGVNSYPSLYVF 79 (101)
T ss_pred eEEcCHhhHHHHh-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC--ceEEEEEeCCccHHHHHHcCCCccCEEEEE
Confidence 7889999999988 4568999999999999999999999999999964 69999999998765 89999999999999
Q ss_pred eCCCceEEeeeCCCCHHHHHHHH
Q psy7938 252 AKDDNRVIDYNGERVLEALSNFV 274 (305)
Q Consensus 252 ~~g~~~~~~~~g~~~~~~l~~fi 274 (305)
++|.. +..|.|.++.+.|.+|.
T Consensus 80 ~~g~~-~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 80 PSGMN-PEKYYGDRSKESLVKFA 101 (101)
T ss_pred cCCCC-cccCCCCCCHHHHHhhC
Confidence 98865 88899999999998873
No 15
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.79 E-value=8e-19 Score=132.97 Aligned_cols=103 Identities=16% Similarity=0.217 Sum_probs=91.7
Q ss_pred CcEEecccChhHHHhcCCCcEEEEEECCCChh--hh--hHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCccccc
Q psy7938 173 AVKVLVASNFDEIAFDKSKHVLVEFYAPWCGH--CK--QLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFP 246 (305)
Q Consensus 173 ~v~~l~~~~f~~~v~~~~~~~lv~f~~~~C~~--C~--~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~P 246 (305)
.|..|+.++|++.+.+++.+++++||++||++ |+ .+.|.+.++|..+-..+++.+++||++.+.. .+|+|.++|
T Consensus 10 ~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iP 89 (120)
T cd03065 10 RVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEED 89 (120)
T ss_pred ceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcccc
Confidence 58899999999999988999999999999977 99 8899999999888333579999999998875 899999999
Q ss_pred EEEEEeCCCceEEeeeCCCCHHHHHHHHHhc
Q psy7938 247 TLKLYAKDDNRVIDYNGERVLEALSNFVESG 277 (305)
Q Consensus 247 tl~~f~~g~~~~~~~~g~~~~~~l~~fi~~~ 277 (305)
|+++|++|+. +.|.|.++.+.|.+||.+.
T Consensus 90 Tl~lfk~G~~--v~~~G~~~~~~l~~~l~~~ 118 (120)
T cd03065 90 SIYVFKDDEV--IEYDGEFAADTLVEFLLDL 118 (120)
T ss_pred EEEEEECCEE--EEeeCCCCHHHHHHHHHHH
Confidence 9999998853 4599999999999999864
No 16
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.79 E-value=9.7e-19 Score=131.67 Aligned_cols=100 Identities=40% Similarity=0.752 Sum_probs=89.2
Q ss_pred cEEecccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCc--ccc--ccCCcccccEEE
Q psy7938 174 VKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATV--NEL--EHTKITSFPTLK 249 (305)
Q Consensus 174 v~~l~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~--~~~--~~~~i~~~Ptl~ 249 (305)
|..++.++|.+.+.+.+++++|.||++||++|+.+.|.|.++++.+. +.+.++.+|++. +.. .+++|+++||++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~--~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELD--GLVQVAAVDCDEDKNKPLCGKYGVQGFPTLK 79 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhc--CCceEEEEecCccccHHHHHHcCCCcCCEEE
Confidence 77899999999998888899999999999999999999999999995 468889999987 433 789999999999
Q ss_pred EEeCCC----ceEEeeeCCCCHHHHHHHHH
Q psy7938 250 LYAKDD----NRVIDYNGERVLEALSNFVE 275 (305)
Q Consensus 250 ~f~~g~----~~~~~~~g~~~~~~l~~fi~ 275 (305)
+|++|+ .....|.|.++.+.|.+||.
T Consensus 80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 80 VFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred EEeCCCcccccccccccCccCHHHHHHHhC
Confidence 999986 23788999999999999983
No 17
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.78 E-value=1.8e-18 Score=130.22 Aligned_cols=100 Identities=31% Similarity=0.661 Sum_probs=87.5
Q ss_pred cEEecccChhHHHh--cCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcc-c-c-c-cCCcccccE
Q psy7938 174 VKVLVASNFDEIAF--DKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVN-E-L-E-HTKITSFPT 247 (305)
Q Consensus 174 v~~l~~~~f~~~v~--~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~-~-~-~-~~~i~~~Pt 247 (305)
|..++.++|+.++. +++++++|.||++||++|+.+.|.|.++++.+++ .++.++.+|++.+ . . . .++++++||
T Consensus 3 v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~-~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 3 VVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG-SNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred ceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc-CCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 88899999999884 4678999999999999999999999999999973 4699999999873 3 2 3 599999999
Q ss_pred EEEEeCCCceEEeeeCC-CCHHHHHHHH
Q psy7938 248 LKLYAKDDNRVIDYNGE-RVLEALSNFV 274 (305)
Q Consensus 248 l~~f~~g~~~~~~~~g~-~~~~~l~~fi 274 (305)
+++|++|+..+..|.|. ++.++|..||
T Consensus 82 i~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 82 ILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 99999887668899994 8999999986
No 18
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.77 E-value=3.8e-18 Score=126.66 Aligned_cols=98 Identities=32% Similarity=0.520 Sum_probs=85.5
Q ss_pred CcEEecccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEE
Q psy7938 173 AVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKL 250 (305)
Q Consensus 173 ~v~~l~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~ 250 (305)
.|..|+.++|++.+. + .++|.||++||++|+.+.|.|++++..++. .++.++++|++.+.. .+++|+++||+++
T Consensus 2 ~v~~l~~~~f~~~~~--~-~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 2 NVVELTDSNWTLVLE--G-EWMIEFYAPWCPACQQLQPEWEEFADWSDD-LGINVAKVDVTQEPGLSGRFFVTALPTIYH 77 (101)
T ss_pred ceEEcChhhHHHHhC--C-CEEEEEECCCCHHHHHHhHHHHHHHHhhcc-CCeEEEEEEccCCHhHHHHcCCcccCEEEE
Confidence 388899999998773 2 389999999999999999999999998753 469999999998765 7899999999999
Q ss_pred EeCCCceEEeeeCCCCHHHHHHHHHh
Q psy7938 251 YAKDDNRVIDYNGERVLEALSNFVES 276 (305)
Q Consensus 251 f~~g~~~~~~~~g~~~~~~l~~fi~~ 276 (305)
|++|. +..|.|.++.+.|.+||++
T Consensus 78 ~~~g~--~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 78 AKDGV--FRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred eCCCC--EEEecCCCCHHHHHHHHhC
Confidence 98774 5789999999999999874
No 19
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.77 E-value=3e-18 Score=127.87 Aligned_cols=101 Identities=51% Similarity=0.901 Sum_probs=91.0
Q ss_pred cEEecccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCc-ccc--ccCCcccccEEEE
Q psy7938 174 VKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATV-NEL--EHTKITSFPTLKL 250 (305)
Q Consensus 174 v~~l~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~-~~~--~~~~i~~~Ptl~~ 250 (305)
|..+++++|++.+.+++++++|.||++||++|+.+.|.|.++++.++...++.++.+|++. +.. .+++|+++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 6778899999988777789999999999999999999999999999755689999999999 554 8899999999999
Q ss_pred EeCCCceEEeeeCCCCHHHHHHHH
Q psy7938 251 YAKDDNRVIDYNGERVLEALSNFV 274 (305)
Q Consensus 251 f~~g~~~~~~~~g~~~~~~l~~fi 274 (305)
|++|+.....|.|.++.+.|.+||
T Consensus 82 ~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 82 FPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EeCCCCCccccCCccCHHHHHhhC
Confidence 998865588999999999999985
No 20
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.77 E-value=3.8e-18 Score=126.97 Aligned_cols=99 Identities=36% Similarity=0.704 Sum_probs=89.8
Q ss_pred cEEecccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEEE
Q psy7938 174 VKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLY 251 (305)
Q Consensus 174 v~~l~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f 251 (305)
|..+++.+|.+.+.+.+++++|.||++||++|+.+.|.|.++++.+. +.+.++.+|++.+.. ++++|+++|++++|
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~--~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~ 79 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALK--GIVKVGAVDADVHQSLAQQYGVRGFPTIKVF 79 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhc--CCceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence 67889999999987777889999999999999999999999999985 368999999998775 89999999999999
Q ss_pred eCCCceEEeeeCCCCHHHHHHHH
Q psy7938 252 AKDDNRVIDYNGERVLEALSNFV 274 (305)
Q Consensus 252 ~~g~~~~~~~~g~~~~~~l~~fi 274 (305)
++|......|.|..+.+.|.+|+
T Consensus 80 ~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 80 GAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCCCcceeecCCCCCHHHHHHHh
Confidence 98855588999999999999997
No 21
>PTZ00102 disulphide isomerase; Provisional
Probab=99.77 E-value=2.1e-18 Score=162.78 Aligned_cols=225 Identities=13% Similarity=0.164 Sum_probs=155.7
Q ss_pred CceecCCCCCCCChhHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEE
Q psy7938 17 DMAKYKPATPEINVDTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTI 96 (305)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v 96 (305)
.+..++.++++..+.....+++.|||+||++|+++.|.|.+++..+ .....++.|+.|
T Consensus 33 ~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~----------------------~~~~~~i~~~~v 90 (477)
T PTZ00102 33 HVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKML----------------------KEKKSEIVLASV 90 (477)
T ss_pred CcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHH----------------------HhcCCcEEEEEE
Confidence 4556655555544455567899999999999999998887764443 222357999999
Q ss_pred eCCchhHHHHHHHcCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHHHcCccccccc---------------
Q psy7938 97 NTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFLAGNLKQHLL--------------- 161 (305)
Q Consensus 97 d~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~~~~~~~~~~~--------------- 161 (305)
||+ ++..+|++|+|. ++||+++|+.|+.. .| .|.++.+.|.+|+.+.+.......-.
T Consensus 91 d~~--~~~~l~~~~~i~--~~Pt~~~~~~g~~~-~y---~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 162 (477)
T PTZ00102 91 DAT--EEMELAQEFGVR--GYPTIKFFNKGNPV-NY---SGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAF 162 (477)
T ss_pred ECC--CCHHHHHhcCCC--cccEEEEEECCceE-Ee---cCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCcEEE
Confidence 999 889999999998 99999999988653 56 37889999999999876432211000
Q ss_pred -----CCC---------------------------CCC---------c------------------cccCCcEEecccCh
Q psy7938 162 -----SQP---------------------------LPE---------D------------------WDKNAVKVLVASNF 182 (305)
Q Consensus 162 -----s~~---------------------------~p~---------~------------------~~~~~v~~l~~~~f 182 (305)
+.. .+. . ..-..+..++.+++
T Consensus 163 ~~~~~~~~~~~~~~f~~~a~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fI~~~~~P~~~~~~~~~~ 242 (477)
T PTZ00102 163 YGEYTSKDSELYKKFEEVADKHREHAKFFVKKHEGKNKIYVLHKDEEGVELFMGKTKEELEEFVSTESFPLFAEINAENY 242 (477)
T ss_pred EEEeccCCcHHHHHHHHHHHhccccceEEEEcCCCCCcEEEEecCCCCcccCCCCCHHHHHHHHHHcCCCceeecCccch
Confidence 000 000 0 00012344555566
Q ss_pred hHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc---ccCCcccccEEEEEeCCCceEE
Q psy7938 183 DEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL---EHTKITSFPTLKLYAKDDNRVI 259 (305)
Q Consensus 183 ~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~---~~~~i~~~Ptl~~f~~g~~~~~ 259 (305)
.... .++.++++.+ ..|.....+.+.++++|+.+++ ++.|+.+|++.... ..+++..+|++++...+++ .
T Consensus 243 ~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~A~~~~~--~~~f~~vd~~~~~~~~~~~~gi~~~P~~~i~~~~~~--y 315 (477)
T PTZ00102 243 RRYI-SSGKDLVWFC--GTTEDYDKYKSVVRKVARKLRE--KYAFVWLDTEQFGSHAKEHLLIEEFPGLAYQSPAGR--Y 315 (477)
T ss_pred HHHh-cCCccEEEEe--cCHHHHHHHHHHHHHHHHhccC--ceEEEEEechhcchhHHHhcCcccCceEEEEcCCcc--c
Confidence 5544 3344443333 2466677789999999999964 68899999887542 7899999999988875543 2
Q ss_pred eeeC----CCCHHHHHHHHHhcC
Q psy7938 260 DYNG----ERVLEALSNFVESGG 278 (305)
Q Consensus 260 ~~~g----~~~~~~l~~fi~~~~ 278 (305)
.+.+ ..+.+.|.+|+++..
T Consensus 316 ~~~~~~~~~~~~~~l~~Fv~~~~ 338 (477)
T PTZ00102 316 LLPPAKESFDSVEALIEFFKDVE 338 (477)
T ss_pred CCCccccccCCHHHHHHHHHHHh
Confidence 2333 368999999999754
No 22
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.76 E-value=7.7e-20 Score=137.59 Aligned_cols=106 Identities=13% Similarity=0.075 Sum_probs=87.3
Q ss_pred EEeeccCceecCCCCCCCC---hhHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhc
Q psy7938 11 LIRLEEDMAKYKPATPEIN---VDTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAG 87 (305)
Q Consensus 11 l~~~~~~~~~~~~~~~~~~---~~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (305)
+|....++++++.++|+.. .++...+++.||||||+||+.++|.+.++ +..+
T Consensus 4 ~~~~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~l-------------------------a~~~ 58 (113)
T cd03006 4 FFSQRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQV-------------------------AQKL 58 (113)
T ss_pred ccCCCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHH-------------------------HHHh
Confidence 3555677888887777743 46778899999999999999999999988 3444
Q ss_pred CceEEEEEEeCCchhHHHHH-HHcCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHH
Q psy7938 88 NLKVLFVTINTDEEDHQKIL-EFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFV 148 (305)
Q Consensus 88 ~~~v~~~~vd~~~~~~~~l~-~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv 148 (305)
++.+.|++|||+ ++..+| ++|+|+ ++||+++|+.|+...+| .|.++.++|..|+
T Consensus 59 ~~~v~~~~Vd~d--~~~~l~~~~~~I~--~~PTl~lf~~g~~~~~y---~G~~~~~~i~~~~ 113 (113)
T cd03006 59 SDQVLFVAINCW--WPQGKCRKQKHFF--YFPVIHLYYRSRGPIEY---KGPMRAPYMEKFV 113 (113)
T ss_pred cCCeEEEEEECC--CChHHHHHhcCCc--ccCEEEEEECCccceEE---eCCCCHHHHHhhC
Confidence 567999999999 888899 589998 99999999988766677 4788999998874
No 23
>PRK09381 trxA thioredoxin; Provisional
Probab=99.76 E-value=1.3e-17 Score=125.51 Aligned_cols=103 Identities=27% Similarity=0.543 Sum_probs=92.3
Q ss_pred CcEEecccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEE
Q psy7938 173 AVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKL 250 (305)
Q Consensus 173 ~v~~l~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~ 250 (305)
.|..+++.+|.+.+.+.+++++|.||++||++|+.+.|.|+++++.+.+ ++.++.+|++.+.. +++++.++||+++
T Consensus 4 ~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 81 (109)
T PRK09381 4 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 81 (109)
T ss_pred cceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC--CcEEEEEECCCChhHHHhCCCCcCCEEEE
Confidence 4889999999998877789999999999999999999999999999964 68999999998776 7899999999999
Q ss_pred EeCCCceEEeeeCCCCHHHHHHHHHhcC
Q psy7938 251 YAKDDNRVIDYNGERVLEALSNFVESGG 278 (305)
Q Consensus 251 f~~g~~~~~~~~g~~~~~~l~~fi~~~~ 278 (305)
|+.|.. ..++.|..+.+.|..||.+..
T Consensus 82 ~~~G~~-~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 82 FKNGEV-AATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EeCCeE-EEEecCCCCHHHHHHHHHHhc
Confidence 987754 778899999999999998764
No 24
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.76 E-value=6.4e-18 Score=125.55 Aligned_cols=98 Identities=39% Similarity=0.790 Sum_probs=86.2
Q ss_pred cEEecccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCC-CCceEEEEEeCCcccc--ccCCcccccEEEE
Q psy7938 174 VKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFAD-RDDITIAKIDATVNEL--EHTKITSFPTLKL 250 (305)
Q Consensus 174 v~~l~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~-~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~ 250 (305)
+..+++++|++.+.+ +.++|.||++||++|+.+.|.|.++++.+++ ...+.++.+|++.+.. ..++|.++||+++
T Consensus 2 ~~~l~~~~f~~~~~~--~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 2 VLELTEDNFDHHIAE--GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL 79 (102)
T ss_pred eeECCHHHHHHHhhc--CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence 677889999998843 3599999999999999999999999999965 3479999999998764 8999999999999
Q ss_pred EeCCCceEEeeeCCCCHHHHHHHH
Q psy7938 251 YAKDDNRVIDYNGERVLEALSNFV 274 (305)
Q Consensus 251 f~~g~~~~~~~~g~~~~~~l~~fi 274 (305)
|++|.. ..+|.|..+.+.|.+||
T Consensus 80 ~~~g~~-~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 80 FKDGEK-VDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EeCCCe-eeEeeCCCCHHHHHhhC
Confidence 988764 78899999999999885
No 25
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.75 E-value=6.1e-18 Score=127.67 Aligned_cols=99 Identities=15% Similarity=0.291 Sum_probs=84.9
Q ss_pred EecccChhHHHh--cCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEEE
Q psy7938 176 VLVASNFDEIAF--DKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLY 251 (305)
Q Consensus 176 ~l~~~~f~~~v~--~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f 251 (305)
.++..+|.+.+. ..+++++|.||++||++|+.+.|.|.++++.+++ .++.++++|++.+.. .+++|.++||+++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~ 86 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP-LGVGIATVNAGHERRLARKLGAHSVPAIVGI 86 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh-cCceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence 456677877653 3678999999999999999999999999999964 368999999987654 88999999999999
Q ss_pred eCCCceEEeeeCCCCHHHHHHHHHh
Q psy7938 252 AKDDNRVIDYNGERVLEALSNFVES 276 (305)
Q Consensus 252 ~~g~~~~~~~~g~~~~~~l~~fi~~ 276 (305)
++|+. ...+.|..+.+.|.+||.+
T Consensus 87 ~~g~~-~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 87 INGQV-TFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred ECCEE-EEEecCCCCHHHHHHHHhc
Confidence 97743 7778999999999999975
No 26
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.75 E-value=9.2e-18 Score=124.56 Aligned_cols=99 Identities=49% Similarity=0.922 Sum_probs=89.7
Q ss_pred ecccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEEEeCC
Q psy7938 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLYAKD 254 (305)
Q Consensus 177 l~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f~~g 254 (305)
|++++|.+.+. ++++++|.||++||++|+.+.+.|+++++.+++.+++.++.+|++.+.. ++++|.++|++++|++|
T Consensus 1 l~~~~~~~~~~-~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 1 LTASNFDDIVL-SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred CchhhHHHHhc-cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 45688998885 7889999999999999999999999999999765579999999988765 78999999999999999
Q ss_pred CceEEeeeCCCCHHHHHHHHHhc
Q psy7938 255 DNRVIDYNGERVLEALSNFVESG 277 (305)
Q Consensus 255 ~~~~~~~~g~~~~~~l~~fi~~~ 277 (305)
+. +..|.|..+.+.|..||.++
T Consensus 80 ~~-~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 80 KK-PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred Cc-ceeecCCCCHHHHHHHHHhc
Confidence 87 89999999999999999875
No 27
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.75 E-value=8.7e-18 Score=124.29 Aligned_cols=89 Identities=26% Similarity=0.565 Sum_probs=76.3
Q ss_pred ChhHHH-hcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCC-cccc--ccCCcccccEEEEEeCCCc
Q psy7938 181 NFDEIA-FDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDAT-VNEL--EHTKITSFPTLKLYAKDDN 256 (305)
Q Consensus 181 ~f~~~v-~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~-~~~~--~~~~i~~~Ptl~~f~~g~~ 256 (305)
++.+++ ...+++++|.|||+||++|+.+.|.|+++++.++ ++.++.+|.+ .+.. ++++|.++||+++|++| .
T Consensus 8 ~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~---~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~ 83 (100)
T cd02999 8 IALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP---QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-P 83 (100)
T ss_pred HHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc---cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-c
Confidence 344444 3567899999999999999999999999999985 4788899987 4443 89999999999999988 4
Q ss_pred eEEeeeCCCCHHHHHHHH
Q psy7938 257 RVIDYNGERVLEALSNFV 274 (305)
Q Consensus 257 ~~~~~~g~~~~~~l~~fi 274 (305)
..+|.|.++.+.|.+||
T Consensus 84 -~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 84 -RVRYNGTRTLDSLAAFY 100 (100)
T ss_pred -eeEecCCCCHHHHHhhC
Confidence 89999999999999986
No 28
>KOG0910|consensus
Probab=99.75 E-value=3.2e-19 Score=136.95 Aligned_cols=92 Identities=18% Similarity=0.324 Sum_probs=81.9
Q ss_pred hhHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHH
Q psy7938 30 VDTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEF 109 (305)
Q Consensus 30 ~~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~ 109 (305)
+++..++||+|||+||+||+.+.|.+.++ ...++|++.|++||+| ++.+|+.+
T Consensus 58 i~S~~PVlVdF~A~WCgPCk~l~P~l~~~-------------------------~~~~~g~~k~~kvdtD--~~~ela~~ 110 (150)
T KOG0910|consen 58 INSDVPVLVDFHAEWCGPCKMLGPILEEL-------------------------VSEYAGKFKLYKVDTD--EHPELAED 110 (150)
T ss_pred HccCCCEEEEEecCcCccHhHhhHHHHHH-------------------------HHhhcCeEEEEEEccc--cccchHhh
Confidence 46678999999999999999999999988 3445699999999999 99999999
Q ss_pred cCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHHHc
Q psy7938 110 FGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFLA 153 (305)
Q Consensus 110 ~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~~~ 153 (305)
|+|. .+||+++|++|+....+. |..+.+.|++++++++.
T Consensus 111 Y~I~--avPtvlvfknGe~~d~~v---G~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 111 YEIS--AVPTVLVFKNGEKVDRFV---GAVPKEQLRSLIKKFLK 149 (150)
T ss_pred ccee--eeeEEEEEECCEEeeeec---ccCCHHHHHHHHHHHhc
Confidence 9998 999999999998877774 67889999999999863
No 29
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.74 E-value=1.5e-17 Score=122.24 Aligned_cols=93 Identities=24% Similarity=0.516 Sum_probs=81.5
Q ss_pred cChhHHHhcC-CCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEEEeCCCc
Q psy7938 180 SNFDEIAFDK-SKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLYAKDDN 256 (305)
Q Consensus 180 ~~f~~~v~~~-~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f~~g~~ 256 (305)
++|++.+.++ +++++|.||++||++|+.+.|.+++++..+.+ .+.++++|++.+.. .+++|.++||+++|++|+.
T Consensus 1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG--QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC--cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 3678878544 78999999999999999999999999999953 68999999998876 8999999999999997644
Q ss_pred eEEeeeCCCCHHHHHHHHH
Q psy7938 257 RVIDYNGERVLEALSNFVE 275 (305)
Q Consensus 257 ~~~~~~g~~~~~~l~~fi~ 275 (305)
...+.|..+.+.|..||+
T Consensus 79 -~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 79 -VDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred -eeeecCCCCHHHHHHHhC
Confidence 678999999999999873
No 30
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.74 E-value=1.4e-17 Score=139.75 Aligned_cols=107 Identities=31% Similarity=0.597 Sum_probs=92.3
Q ss_pred CCcEEecccChhHHHhcC----CCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccc
Q psy7938 172 NAVKVLVASNFDEIAFDK----SKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSF 245 (305)
Q Consensus 172 ~~v~~l~~~~f~~~v~~~----~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~ 245 (305)
+.|..++.++|++.+..+ +++++|.||++||++|+.+.|.|+++++.+++ .+.++.+|++.+.. ++++|+++
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~--~v~~~~VD~~~~~~l~~~~~I~~~ 107 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG--QVNVADLDATRALNLAKRFAIKGY 107 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC--CeEEEEecCcccHHHHHHcCCCcC
Confidence 459999999999988543 57999999999999999999999999999963 68999999998765 89999999
Q ss_pred cEEEEEeCCCceEEeeeCCCCHHHHHHHHHhcCCCC
Q psy7938 246 PTLKLYAKDDNRVIDYNGERVLEALSNFVESGGKEG 281 (305)
Q Consensus 246 Ptl~~f~~g~~~~~~~~g~~~~~~l~~fi~~~~~~~ 281 (305)
||+++|++|.. ...+.|.++.+.|.+|+.+.....
T Consensus 108 PTl~~f~~G~~-v~~~~G~~s~e~L~~fi~~~~~~~ 142 (224)
T PTZ00443 108 PTLLLFDKGKM-YQYEGGDRSTEKLAAFALGDFKKA 142 (224)
T ss_pred CEEEEEECCEE-EEeeCCCCCHHHHHHHHHHHHHhh
Confidence 99999998743 444567899999999999886544
No 31
>KOG1731|consensus
Probab=99.74 E-value=5.1e-18 Score=154.46 Aligned_cols=233 Identities=15% Similarity=0.171 Sum_probs=148.3
Q ss_pred EEEeeccCceecCCCCCCCCh-hHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcC
Q psy7938 10 RLIRLEEDMAKYKPATPEINV-DTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGN 88 (305)
Q Consensus 10 ~l~~~~~~~~~~~~~~~~~~~-~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (305)
.||..+|+++.++.++|..++ ++.+.++|+||++|||||+.++|.|..++.++ ++|.
T Consensus 33 tLy~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl----------------------~~W~ 90 (606)
T KOG1731|consen 33 TLYSPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDL----------------------EKWR 90 (606)
T ss_pred cccCCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHH----------------------hccc
Confidence 478889999999999988666 44569999999999999999999999998888 7788
Q ss_pred ceEEEEEEeCCchhHHHHHHHcCCCCCCCCeEEEEecCcCceeccCC-CCCCCHHHHHHHHHHHHcCcccccccCCCCCC
Q psy7938 89 LKVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPA-TPEISVDTVRSFVTEFLAGNLKQHLLSQPLPE 167 (305)
Q Consensus 89 ~~v~~~~vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~~~~-~~~~~~~~l~~fv~~~~~~~~~~~~~s~~~p~ 167 (305)
..|.++.|||.+++|..||++|+|. +||++.+|..+.....+... .+.....++++.+...+....-..... .+|.
T Consensus 91 ~vv~vaaVdCA~~~N~~lCRef~V~--~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~-~WP~ 167 (606)
T KOG1731|consen 91 PVVRVAAVDCADEENVKLCREFSVS--GYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYP-SWPN 167 (606)
T ss_pred ceeEEEEeeccchhhhhhHhhcCCC--CCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCC-CCCC
Confidence 9999999999999999999999998 99999999877432221110 244556677777776655432211111 1221
Q ss_pred ccccCCcEEecc-cChhHHHhcCCCcEEEEE-ECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccccccCCcccc
Q psy7938 168 DWDKNAVKVLVA-SNFDEIAFDKSKHVLVEF-YAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSF 245 (305)
Q Consensus 168 ~~~~~~v~~l~~-~~f~~~v~~~~~~~lv~f-~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~~~~~i~~~ 245 (305)
. .++..-+. ...++.+.++...+.+.| ..+. .-.+..+-..+.....-+-+..|........++++..
T Consensus 168 f---~pl~~~~~~~~l~~~~~~~~~yvAiv~e~~~s-------~lg~~~~l~~l~~~~v~vr~~~d~q~~~~~~l~~~~~ 237 (606)
T KOG1731|consen 168 F---DPLKDTTTLEELDEGISTTANYVAIVFETEPS-------DLGWANLLNDLPSKQVGVRARLDTQNFPLFGLKPDNF 237 (606)
T ss_pred C---CCCCCcchHHHHhcccccccceeEEEEecCCc-------ccHHHHHHhhccCCCcceEEEecchhccccccCCCCc
Confidence 1 11111111 111111222233455555 3321 1234555555644332233334544555555999999
Q ss_pred cEEEEEeCCCceEEeeeCC---CCHHHHHHHHHhc
Q psy7938 246 PTLKLYAKDDNRVIDYNGE---RVLEALSNFVESG 277 (305)
Q Consensus 246 Ptl~~f~~g~~~~~~~~g~---~~~~~l~~fi~~~ 277 (305)
|+.++|++|..+++.-.+. .-.+.|.++|-+.
T Consensus 238 ~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~lg~~ 272 (606)
T KOG1731|consen 238 PLALLFRNGEQQPLWPSSSSRSAYVKKIDDLLGDK 272 (606)
T ss_pred hhhhhhcCCcccccccccccHHHHHHHHHHHhcCc
Confidence 9999999997754433332 2235555555443
No 32
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.74 E-value=5.3e-18 Score=159.27 Aligned_cols=230 Identities=16% Similarity=0.194 Sum_probs=155.2
Q ss_pred CceecCCCCCCCChhHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEE
Q psy7938 17 DMAKYKPATPEINVDTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTI 96 (305)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v 96 (305)
++..++.++++..+++.+.+++.|||+||++|+.+.|.+.+++..+ ......|.|+.|
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~----------------------~~~~~~v~~~~v 59 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADEL----------------------KKKGPPIKLAKV 59 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHH----------------------hhcCCceEEEEE
Confidence 3445555555544555567889999999999999998887774444 222356999999
Q ss_pred eCCchhHHHHHHHcCCCCCCCCeEEEEecCcC-ceeccCCCCCCCHHHHHHHHHHHHcCccccc---------ccCCCC-
Q psy7938 97 NTDEEDHQKILEFFGMSKDEVPSLRLIRLEED-MAKYKPATPEISVDTVRSFVTEFLAGNLKQH---------LLSQPL- 165 (305)
Q Consensus 97 d~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~-~~~~~~~~~~~~~~~l~~fv~~~~~~~~~~~---------~~s~~~- 165 (305)
||+ ++.++|+++||. ++||+++|+.|.. ...| .|.++.++|.+|+.+.+....... +.....
T Consensus 60 d~~--~~~~l~~~~~i~--~~Pt~~~~~~g~~~~~~~---~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~ 132 (462)
T TIGR01130 60 DAT--EEKDLAQKYGVS--GYPTLKIFRNGEDSVSDY---NGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDDVV 132 (462)
T ss_pred ECC--CcHHHHHhCCCc--cccEEEEEeCCccceeEe---cCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCcE
Confidence 999 889999999998 9999999998865 4556 367888999999987754222110 000000
Q ss_pred ----------------------------------------------CC----------------c---------------
Q psy7938 166 ----------------------------------------------PE----------------D--------------- 168 (305)
Q Consensus 166 ----------------------------------------------p~----------------~--------------- 168 (305)
+. .
T Consensus 133 vi~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~ 212 (462)
T TIGR01130 133 VIGFFKDLDSELNDTFLSVAEKLRDVYFFFAHSSDVAAFAKLGAFPDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIR 212 (462)
T ss_pred EEEEECCCCcHHHHHHHHHHHHhhhccceEEecCCHHHHhhcCCCCCcEEEecccccccccccccCcccCCHHHHHHHHH
Confidence 00 0
Q ss_pred -cccCCcEEecccChhHHHhcCCCcEEEEEE--CCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcc
Q psy7938 169 -WDKNAVKVLVASNFDEIAFDKSKHVLVEFY--APWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKIT 243 (305)
Q Consensus 169 -~~~~~v~~l~~~~f~~~v~~~~~~~lv~f~--~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~ 243 (305)
..-..+..++..++..... .+ +.++.|+ ......|..+...++++|..+++ ..+.|+.+|+..... ..+++.
T Consensus 213 ~~~~p~v~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~i~f~~~d~~~~~~~~~~~~~~ 289 (462)
T TIGR01130 213 AESLPLVGEFTQETAAKYFE-SG-PLVVLYYNVDESLDPFEELRNRFLEAAKKFRG-KFVNFAVADEEDFGRELEYFGLK 289 (462)
T ss_pred HcCCCceEeeCCcchhhHhC-CC-CceeEEEEecCCchHHHHHHHHHHHHHHHCCC-CeEEEEEecHHHhHHHHHHcCCC
Confidence 0001123333333433332 22 4444443 34556689999999999999964 478899999876543 678887
Q ss_pred --cccEEEEEeCCCceEEeeeC-CCCHHHHHHHHHhcC
Q psy7938 244 --SFPTLKLYAKDDNRVIDYNG-ERVLEALSNFVESGG 278 (305)
Q Consensus 244 --~~Ptl~~f~~g~~~~~~~~g-~~~~~~l~~fi~~~~ 278 (305)
.+|+++++...+.....+.+ ..+.+.|.+||++..
T Consensus 290 ~~~~P~~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~ 327 (462)
T TIGR01130 290 AEKFPAVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFL 327 (462)
T ss_pred ccCCceEEEEeCCcccccCCCcCCCCHHHHHHHHHHHh
Confidence 79999999876522455555 789999999999854
No 33
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.3e-17 Score=141.39 Aligned_cols=105 Identities=27% Similarity=0.583 Sum_probs=96.0
Q ss_pred CcEEecccChhHHHh-cC-CCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEE
Q psy7938 173 AVKVLVASNFDEIAF-DK-SKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTL 248 (305)
Q Consensus 173 ~v~~l~~~~f~~~v~-~~-~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl 248 (305)
.|+++|+.+|.+.|. .+ ..+|+|+||+|||++|+.+.|.+++++..++ +.+.+++|||+.... ..|+|+++||+
T Consensus 24 ~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~--G~f~LakvN~D~~p~vAaqfgiqsIPtV 101 (304)
T COG3118 24 GIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYK--GKFKLAKVNCDAEPMVAAQFGVQSIPTV 101 (304)
T ss_pred cceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhC--CceEEEEecCCcchhHHHHhCcCcCCeE
Confidence 399999999999984 33 3599999999999999999999999999995 589999999999886 89999999999
Q ss_pred EEEeCCCceEEeeeCCCCHHHHHHHHHhcCCC
Q psy7938 249 KLYAKDDNRVIDYNGERVLEALSNFVESGGKE 280 (305)
Q Consensus 249 ~~f~~g~~~~~~~~g~~~~~~l~~fi~~~~~~ 280 (305)
+.|+.|.. +-.|.|....+.|.+||.+..+.
T Consensus 102 ~af~dGqp-VdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 102 YAFKDGQP-VDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EEeeCCcC-ccccCCCCcHHHHHHHHHHhcCh
Confidence 99999977 78899999999999999998865
No 34
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.73 E-value=3.5e-17 Score=121.98 Aligned_cols=99 Identities=36% Similarity=0.718 Sum_probs=86.9
Q ss_pred cEEecccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCc--ccc--ccCCcccccEEE
Q psy7938 174 VKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATV--NEL--EHTKITSFPTLK 249 (305)
Q Consensus 174 v~~l~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~--~~~--~~~~i~~~Ptl~ 249 (305)
|..++..+|++.+. .+++++|.||++||++|+.+.|.+.++++.+.....+.++.+|++. +.. .+++|+++||++
T Consensus 2 ~~~l~~~~~~~~~~-~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 2 VVHLTDEDFRKFLK-KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred eEEechHhHHHHHh-hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 67888899998874 4669999999999999999999999999999755679999999987 443 789999999999
Q ss_pred EEeCCCceEEeeeCCCCHHHHHHHH
Q psy7938 250 LYAKDDNRVIDYNGERVLEALSNFV 274 (305)
Q Consensus 250 ~f~~g~~~~~~~~g~~~~~~l~~fi 274 (305)
+|++|+. +..|.|..+.+.|.+||
T Consensus 81 ~~~~g~~-~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 81 YFENGKF-VEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEeCCCe-eEEeCCCCCHHHHHhhC
Confidence 9998764 78999999999999885
No 35
>PHA02278 thioredoxin-like protein
Probab=99.73 E-value=2.4e-17 Score=122.07 Aligned_cols=90 Identities=19% Similarity=0.265 Sum_probs=75.8
Q ss_pred cChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcc-----cc-ccCCcccccEEEEEeC
Q psy7938 180 SNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVN-----EL-EHTKITSFPTLKLYAK 253 (305)
Q Consensus 180 ~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~-----~~-~~~~i~~~Ptl~~f~~ 253 (305)
++|.+.+ ..+++++|+|||+||++|+.+.|.+++++..+. ..+.++.+|++.+ .. .+++|.++||+++|++
T Consensus 5 ~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~--~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~ 81 (103)
T PHA02278 5 VDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGD--IKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD 81 (103)
T ss_pred HHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhc--CCceEEEEECCccccccHHHHHHCCCccccEEEEEEC
Confidence 5677777 578999999999999999999999999998863 3456788888865 22 8999999999999999
Q ss_pred CCceEEeeeCCCCHHHHHHH
Q psy7938 254 DDNRVIDYNGERVLEALSNF 273 (305)
Q Consensus 254 g~~~~~~~~g~~~~~~l~~f 273 (305)
|+. ..++.|..+.+.|.++
T Consensus 82 G~~-v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 82 GQL-VKKYEDQVTPMQLQEL 100 (103)
T ss_pred CEE-EEEEeCCCCHHHHHhh
Confidence 855 8889998888888775
No 36
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.72 E-value=1.6e-17 Score=123.95 Aligned_cols=84 Identities=17% Similarity=0.250 Sum_probs=72.2
Q ss_pred cChhHHHh-cCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEEEeCCCc
Q psy7938 180 SNFDEIAF-DKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLYAKDDN 256 (305)
Q Consensus 180 ~~f~~~v~-~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f~~g~~ 256 (305)
++|++.+. +++++++|.|||+||++|+.|.|.+++++..+. +.+.|++||++.+.. .+++|.++||+++|++|+.
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~--~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~ 80 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVS--NFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKH 80 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHcc--CceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEE
Confidence 56777775 367899999999999999999999999999995 357899999999886 8999999999999999876
Q ss_pred eEEeeeCCCC
Q psy7938 257 RVIDYNGERV 266 (305)
Q Consensus 257 ~~~~~~g~~~ 266 (305)
+.+..|..+
T Consensus 81 -v~~~~G~~~ 89 (114)
T cd02954 81 -MKIDLGTGN 89 (114)
T ss_pred -EEEEcCCCC
Confidence 677777443
No 37
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.72 E-value=9.8e-19 Score=129.86 Aligned_cols=98 Identities=13% Similarity=0.160 Sum_probs=79.6
Q ss_pred ceecCCCCCCCChhHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEe
Q psy7938 18 MAKYKPATPEINVDTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTIN 97 (305)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd 97 (305)
++.++.++|+..+.+...+++.||++||++|+.+.|.+.++ +.++++.+.|++||
T Consensus 3 ~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~-------------------------a~~~~~~~~~~~vd 57 (101)
T cd03003 3 IVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREF-------------------------AKEMDGVIRIGAVN 57 (101)
T ss_pred eEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHH-------------------------HHHhcCceEEEEEe
Confidence 44555555654444457899999999999999999988888 34445679999999
Q ss_pred CCchhHHHHHHHcCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHH
Q psy7938 98 TDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSF 147 (305)
Q Consensus 98 ~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~f 147 (305)
|+ +++.+|++++|+ ++||+++|+.|.....| .|.++.++|.+|
T Consensus 58 ~~--~~~~~~~~~~v~--~~Pt~~~~~~g~~~~~~---~G~~~~~~l~~f 100 (101)
T cd03003 58 CG--DDRMLCRSQGVN--SYPSLYVFPSGMNPEKY---YGDRSKESLVKF 100 (101)
T ss_pred CC--ccHHHHHHcCCC--ccCEEEEEcCCCCcccC---CCCCCHHHHHhh
Confidence 99 789999999998 99999999988765566 478898988887
No 38
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.71 E-value=3.3e-17 Score=122.66 Aligned_cols=97 Identities=27% Similarity=0.449 Sum_probs=80.5
Q ss_pred cEEecccChhHHHhcCCCcEEEEEEC--CCCh---hhhhHHHHHHHHHHHhCCCCceEEEEEeCC-----cc-cc-ccCC
Q psy7938 174 VKVLVASNFDEIAFDKSKHVLVEFYA--PWCG---HCKQLAPIYDKLGEKFADRDDITIAKIDAT-----VN-EL-EHTK 241 (305)
Q Consensus 174 v~~l~~~~f~~~v~~~~~~~lv~f~~--~~C~---~C~~~~~~~~~la~~~~~~~~v~~~~id~~-----~~-~~-~~~~ 241 (305)
+..|+..+|++.+ ..++.+||.||+ |||+ +|+.+.|.+.+.+. .+.+++|||+ .+ +. ++|+
T Consensus 3 ~v~L~~~nF~~~v-~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~------~v~lakVd~~d~~~~~~~~L~~~y~ 75 (116)
T cd03007 3 CVDLDTVTFYKVI-PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD------DLLVAEVGIKDYGEKLNMELGERYK 75 (116)
T ss_pred eeECChhhHHHHH-hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC------ceEEEEEecccccchhhHHHHHHhC
Confidence 7789999999988 567889999999 8898 77776666665543 4899999994 23 23 8999
Q ss_pred cc--cccEEEEEeCCC-ceEEeeeCC-CCHHHHHHHHHhc
Q psy7938 242 IT--SFPTLKLYAKDD-NRVIDYNGE-RVLEALSNFVESG 277 (305)
Q Consensus 242 i~--~~Ptl~~f~~g~-~~~~~~~g~-~~~~~l~~fi~~~ 277 (305)
|+ +||||++|++|. ..+..|.|. ++.+.|.+||+++
T Consensus 76 I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 76 LDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 99 999999999884 237899996 9999999999986
No 39
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.71 E-value=8.8e-17 Score=119.68 Aligned_cols=93 Identities=20% Similarity=0.316 Sum_probs=77.4
Q ss_pred ccChhHHHhcC-CCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc----c-ccCCcccccEEEEEe
Q psy7938 179 ASNFDEIAFDK-SKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE----L-EHTKITSFPTLKLYA 252 (305)
Q Consensus 179 ~~~f~~~v~~~-~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~----~-~~~~i~~~Ptl~~f~ 252 (305)
.++|.+.+.+. +++++|.||++||++|+.+.|.++++++.+ .++.|+++|++.+. . .+++|+++||+++|+
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~---~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~ 79 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC---NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYK 79 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC---CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEe
Confidence 46778877543 789999999999999999999999999998 36899999998864 2 789999999999998
Q ss_pred CCCceEEeeeCCCCHHHHHHHHHh
Q psy7938 253 KDDNRVIDYNGERVLEALSNFVES 276 (305)
Q Consensus 253 ~g~~~~~~~~g~~~~~~l~~fi~~ 276 (305)
+|+. ..++.|. +.+.|.+-+..
T Consensus 80 ~G~~-v~~~~G~-~~~~l~~~~~~ 101 (103)
T cd02985 80 DGEK-IHEEEGI-GPDELIGDVLY 101 (103)
T ss_pred CCeE-EEEEeCC-CHHHHHHHHHh
Confidence 7755 8889995 45677776654
No 40
>PRK10996 thioredoxin 2; Provisional
Probab=99.70 E-value=2e-16 Score=124.14 Aligned_cols=103 Identities=20% Similarity=0.528 Sum_probs=90.3
Q ss_pred cCCcEEecccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEE
Q psy7938 171 KNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTL 248 (305)
Q Consensus 171 ~~~v~~l~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl 248 (305)
.+.+..++..+|++.+ +.++.++|.||++||++|+.+.|.|.++++.+. +++.++++|++.+.. .+++|.++||+
T Consensus 34 ~~~~i~~~~~~~~~~i-~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~--~~v~~~~vd~~~~~~l~~~~~V~~~Ptl 110 (139)
T PRK10996 34 DGEVINATGETLDKLL-QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERS--GKVRFVKVNTEAERELSARFRIRSIPTI 110 (139)
T ss_pred CCCCEEcCHHHHHHHH-hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhC--CCeEEEEEeCCCCHHHHHhcCCCccCEE
Confidence 3457778889999876 568999999999999999999999999999985 469999999988775 89999999999
Q ss_pred EEEeCCCceEEeeeCCCCHHHHHHHHHhc
Q psy7938 249 KLYAKDDNRVIDYNGERVLEALSNFVESG 277 (305)
Q Consensus 249 ~~f~~g~~~~~~~~g~~~~~~l~~fi~~~ 277 (305)
++|++|+. ...+.|..+.+.|.+||++.
T Consensus 111 ii~~~G~~-v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 111 MIFKNGQV-VDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEEECCEE-EEEEcCCCCHHHHHHHHHHh
Confidence 99987654 78889999999999999864
No 41
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.69 E-value=1.8e-16 Score=117.75 Aligned_cols=95 Identities=20% Similarity=0.442 Sum_probs=80.0
Q ss_pred cccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc-ccCCcccccEEEEEeCCCc
Q psy7938 178 VASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL-EHTKITSFPTLKLYAKDDN 256 (305)
Q Consensus 178 ~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~-~~~~i~~~Ptl~~f~~g~~ 256 (305)
+.++|++++ +++++++|.|||+||++|+.+.|.+.+++..+++ ..+.|+.+|++.... +.++|+++||+++|++|+.
T Consensus 6 ~~~~~~~~i-~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~-~~~~~~~vd~d~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 6 NQEEWEELL-SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD-DLLHFATAEADTIDTLKRYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred CHHHHHHHH-ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC-CcEEEEEEeCCCHHHHHHcCCCcCcEEEEEECCEE
Confidence 457888876 5688999999999999999999999999999863 357899999884444 8999999999999998755
Q ss_pred eEEeeeCCCCHHHHHHHHHh
Q psy7938 257 RVIDYNGERVLEALSNFVES 276 (305)
Q Consensus 257 ~~~~~~g~~~~~~l~~fi~~ 276 (305)
..+..|. +.+.|.++|.+
T Consensus 84 -~~~~~G~-~~~~~~~~i~~ 101 (102)
T cd02948 84 -VAVIRGA-NAPLLNKTITE 101 (102)
T ss_pred -EEEEecC-ChHHHHHHHhh
Confidence 6777775 78889998875
No 42
>PLN02309 5'-adenylylsulfate reductase
Probab=99.69 E-value=1.7e-16 Score=145.82 Aligned_cols=111 Identities=29% Similarity=0.585 Sum_probs=95.4
Q ss_pred CCccccCCcEEecccChhHHHh--cCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCC-cccc---cc
Q psy7938 166 PEDWDKNAVKVLVASNFDEIAF--DKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDAT-VNEL---EH 239 (305)
Q Consensus 166 p~~~~~~~v~~l~~~~f~~~v~--~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~-~~~~---~~ 239 (305)
++-+++..|..|+.++|++++. +.++.++|.||++||++|+.|.|.|.+++..+.+ .++.|+++|++ .+.. +.
T Consensus 339 ~dl~~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~-~~V~f~kVD~d~~~~~la~~~ 417 (457)
T PLN02309 339 ADIFNSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAG-SGVKVAKFRADGDQKEFAKQE 417 (457)
T ss_pred ccccCCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc-CCeEEEEEECCCcchHHHHhh
Confidence 3445667899999999999873 6788999999999999999999999999999964 36999999999 4332 36
Q ss_pred CCcccccEEEEEeCCCceEEeeeC-CCCHHHHHHHHHhc
Q psy7938 240 TKITSFPTLKLYAKDDNRVIDYNG-ERVLEALSNFVESG 277 (305)
Q Consensus 240 ~~i~~~Ptl~~f~~g~~~~~~~~g-~~~~~~l~~fi~~~ 277 (305)
++|+++||+++|++|...++.|.| .++.++|..||++.
T Consensus 418 ~~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 418 LQLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred CCCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 999999999999998766889985 79999999999863
No 43
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.69 E-value=4.3e-16 Score=122.61 Aligned_cols=113 Identities=20% Similarity=0.396 Sum_probs=89.1
Q ss_pred cChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc----cccCCcccccEEEEEeCCC
Q psy7938 180 SNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE----LEHTKITSFPTLKLYAKDD 255 (305)
Q Consensus 180 ~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~----~~~~~i~~~Ptl~~f~~g~ 255 (305)
..|++.+ ..+++++|.||++||++|+.+.|.+.++++.+.+ .+.|+.+|.+.+. ...|+|.++||+++|++++
T Consensus 11 ~~~~~a~-~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G 87 (142)
T cd02950 11 TPPEVAL-SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD--QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREG 87 (142)
T ss_pred CCHHHHH-hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc--CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCC
Confidence 4566544 6788999999999999999999999999999964 4556666655432 3899999999999997655
Q ss_pred ceEEeeeCCCCHHHHHHHHHhcCCCCCCCCCCCCCcceee
Q psy7938 256 NRVIDYNGERVLEALSNFVESGGKEGGLPSGAQQGKFRLV 295 (305)
Q Consensus 256 ~~~~~~~g~~~~~~l~~fi~~~~~~~~~~~~~~~~~~~~~ 295 (305)
+...++.|..+.+.|.++|.+.....+.+.....++.+-+
T Consensus 88 ~~v~~~~G~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 127 (142)
T cd02950 88 NEEGQSIGLQPKQVLAQNLDALVAGEPLPYANAVGQTSEL 127 (142)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHcCCCCCcccccCccccc
Confidence 6577899999999999999998876666666555554433
No 44
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.69 E-value=2e-16 Score=145.39 Aligned_cols=107 Identities=30% Similarity=0.608 Sum_probs=92.7
Q ss_pred cccCCcEEecccChhHHHh--cCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc--c--ccCCc
Q psy7938 169 WDKNAVKVLVASNFDEIAF--DKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE--L--EHTKI 242 (305)
Q Consensus 169 ~~~~~v~~l~~~~f~~~v~--~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~--~--~~~~i 242 (305)
+++..|..|+.++|++.+. +.++++||.||++||++|+.+.|.|+++|+.+++. .+.++.||++.+. . ..++|
T Consensus 348 ~~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~-~v~~~kVdvD~~~~~~~~~~~~I 426 (463)
T TIGR00424 348 FDSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS-GVKVAKFRADGDQKEFAKQELQL 426 (463)
T ss_pred cCCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CcEEEEEECCCCccHHHHHHcCC
Confidence 3555799999999999983 57789999999999999999999999999999642 4889999988654 2 57999
Q ss_pred ccccEEEEEeCCCceEEeee-CCCCHHHHHHHHHh
Q psy7938 243 TSFPTLKLYAKDDNRVIDYN-GERVLEALSNFVES 276 (305)
Q Consensus 243 ~~~Ptl~~f~~g~~~~~~~~-g~~~~~~l~~fi~~ 276 (305)
.++||+++|++|...++.|. |.++.+.|..||+.
T Consensus 427 ~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 427 GSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred CccceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 99999999999976588897 58999999999985
No 45
>KOG0912|consensus
Probab=99.68 E-value=5.8e-17 Score=136.66 Aligned_cols=198 Identities=14% Similarity=0.212 Sum_probs=136.8
Q ss_pred CCChhHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHH
Q psy7938 27 EINVDTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKI 106 (305)
Q Consensus 27 ~~~~~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l 106 (305)
+...++..-++|.|||+||+.++.++|+|++.+..+++ +-..+++.++.|||+ ....+
T Consensus 7 ~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~--------------------e~P~~kvvwg~VDcd--~e~~i 64 (375)
T KOG0912|consen 7 DSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQ--------------------EFPEGKVVWGKVDCD--KEDDI 64 (375)
T ss_pred HHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHH--------------------hCCCcceEEEEcccc--hhhHH
Confidence 33445566678899999999999999999999777753 222389999999999 88899
Q ss_pred HHHcCCCCCCCCeEEEEecCcCc-eeccCCCCCCCHHHHHHHHHHHHcCcccccccCCCCCCccccCCcEEecc-cChhH
Q psy7938 107 LEFFGMSKDEVPSLRLIRLEEDM-AKYKPATPEISVDTVRSFVTEFLAGNLKQHLLSQPLPEDWDKNAVKVLVA-SNFDE 184 (305)
Q Consensus 107 ~~~~~I~~~~~Ptl~~~~~~~~~-~~~~~~~~~~~~~~l~~fv~~~~~~~~~~~~~s~~~p~~~~~~~v~~l~~-~~f~~ 184 (305)
+++|.|. .|||+.+|.+|.-. ..|+ |.++.++|.+||+..++.. +.+..+ +++..
T Consensus 65 a~ky~I~--KyPTlKvfrnG~~~~rEYR---g~RsVeaL~efi~kq~s~~------------------i~Ef~sl~~l~n 121 (375)
T KOG0912|consen 65 ADKYHIN--KYPTLKVFRNGEMMKREYR---GQRSVEALIEFIEKQLSDP------------------INEFESLDQLQN 121 (375)
T ss_pred hhhhccc--cCceeeeeeccchhhhhhc---cchhHHHHHHHHHHHhccH------------------HHHHHhHHHHHh
Confidence 9999998 99999999999753 4774 7899999999999997543 222211 33333
Q ss_pred HHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccccccCCcccccEEEEEeCCCceE-EeeeC
Q psy7938 185 IAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKLYAKDDNRV-IDYNG 263 (305)
Q Consensus 185 ~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~~~~~i~~~Ptl~~f~~g~~~~-~~~~g 263 (305)
....+++.++..|-....+. ...+.++|..++++-.+.++--|...... -.+.+ +++|+++...+ ..|.|
T Consensus 122 ~~~p~K~~vIgyF~~kdspe----y~~~~kva~~lr~dc~f~V~~gD~~~~~~----~~~~~-~~~f~pd~~~~~~~f~G 192 (375)
T KOG0912|consen 122 LDIPSKRTVIGYFPSKDSPE----YDNLRKVASLLRDDCVFLVGFGDLLKPHE----PPGKN-ILVFDPDHSEPNHEFLG 192 (375)
T ss_pred hhccccceEEEEeccCCCch----HHHHHHHHHHHhhccEEEeeccccccCCC----CCCCc-eEEeCCCcCCcCccccc
Confidence 33334556666666555444 45677888888754333333223322211 12223 56667665432 36999
Q ss_pred -CCCHHHHHHHHHhcC
Q psy7938 264 -ERVLEALSNFVESGG 278 (305)
Q Consensus 264 -~~~~~~l~~fi~~~~ 278 (305)
..+.+.+.+||.+..
T Consensus 193 ~~~nf~el~~Wi~dKc 208 (375)
T KOG0912|consen 193 SMTNFDELKQWIQDKC 208 (375)
T ss_pred ccccHHHHHHHHHhcc
Confidence 557899999999864
No 46
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.68 E-value=3.3e-16 Score=118.67 Aligned_cols=99 Identities=30% Similarity=0.598 Sum_probs=81.6
Q ss_pred CcEEecccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCC-CceEEEEEeCCccc----cccCCcccccE
Q psy7938 173 AVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADR-DDITIAKIDATVNE----LEHTKITSFPT 247 (305)
Q Consensus 173 ~v~~l~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~id~~~~~----~~~~~i~~~Pt 247 (305)
.+.+++.++|++.+.+++++++|.||++||++|+.+.|.|++++..+++. +.+.++.+||+... +.+++|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 48899999999999887889999999999999999999999999998643 35899999986432 27899999999
Q ss_pred EEEEeCCCce---EEeeeCC-CCHHHHH
Q psy7938 248 LKLYAKDDNR---VIDYNGE-RVLEALS 271 (305)
Q Consensus 248 l~~f~~g~~~---~~~~~g~-~~~~~l~ 271 (305)
+++|++|..+ -..|+|. +..+++.
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~ 109 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGPERDVNELR 109 (114)
T ss_pred EEEECCCCccCCCCCcccCCccCHHHHH
Confidence 9999998754 2456664 5555553
No 47
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.68 E-value=5e-16 Score=114.83 Aligned_cols=97 Identities=33% Similarity=0.616 Sum_probs=85.7
Q ss_pred cccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEEEeCCC
Q psy7938 178 VASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLYAKDD 255 (305)
Q Consensus 178 ~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f~~g~ 255 (305)
+.++|.+.+.+.+++++|.||++||++|+.+.+.++++++.+. +++.++.+|++.+.. ++++|.++|++++|++|+
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYE--GKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence 4577888887777899999999999999999999999999884 469999999998875 899999999999998775
Q ss_pred ceEEeeeCCCCHHHHHHHHHhc
Q psy7938 256 NRVIDYNGERVLEALSNFVESG 277 (305)
Q Consensus 256 ~~~~~~~g~~~~~~l~~fi~~~ 277 (305)
. ...+.|..+.+.|.+||+++
T Consensus 80 ~-~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 80 E-VDRSVGALPKAALKQLINKN 100 (101)
T ss_pred E-eeeecCCCCHHHHHHHHHhh
Confidence 5 67888999999999999865
No 48
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.67 E-value=4.5e-16 Score=117.88 Aligned_cols=89 Identities=26% Similarity=0.406 Sum_probs=77.6
Q ss_pred CCcEEecccChhHHHhcC--CCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc-ccCCcccccEE
Q psy7938 172 NAVKVLVASNFDEIAFDK--SKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL-EHTKITSFPTL 248 (305)
Q Consensus 172 ~~v~~l~~~~f~~~v~~~--~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~-~~~~i~~~Ptl 248 (305)
+.+..+++++|.+.+.+. +++++|+||++||++|+.+.|.+++++..+. ++.|+++|++.+.. .+++|.++||+
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~---~v~f~~vd~~~~~l~~~~~i~~~Pt~ 80 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP---ETKFVKINAEKAFLVNYLDIKVLPTL 80 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC---CcEEEEEEchhhHHHHhcCCCcCCEE
Confidence 458899999999998655 3899999999999999999999999999984 58899999998743 88999999999
Q ss_pred EEEeCCCceEEeeeCC
Q psy7938 249 KLYAKDDNRVIDYNGE 264 (305)
Q Consensus 249 ~~f~~g~~~~~~~~g~ 264 (305)
++|++|+. ..++.|.
T Consensus 81 ~~f~~G~~-v~~~~G~ 95 (113)
T cd02957 81 LVYKNGEL-IDNIVGF 95 (113)
T ss_pred EEEECCEE-EEEEecH
Confidence 99999865 6777773
No 49
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.67 E-value=2.5e-16 Score=116.12 Aligned_cols=98 Identities=44% Similarity=0.873 Sum_probs=85.3
Q ss_pred EecccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEEEeC
Q psy7938 176 VLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLYAK 253 (305)
Q Consensus 176 ~l~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f~~ 253 (305)
.++.++|.+.+.+. ++++|.||++||++|+.+.+.|.+++..+++...+.++.+|++.+.. +.++|+++||+++|++
T Consensus 2 ~l~~~~~~~~i~~~-~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 ELTDDNFDELVKDS-KDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cccHHHHHHHHhCC-CcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 46678888888544 49999999999999999999999999999644689999999998554 8999999999999998
Q ss_pred CCceEEeeeCCCCHHHHHHHH
Q psy7938 254 DDNRVIDYNGERVLEALSNFV 274 (305)
Q Consensus 254 g~~~~~~~~g~~~~~~l~~fi 274 (305)
++....+|.|..+.+.|.+|+
T Consensus 81 ~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCcccccCCCCcCHHHHHhhC
Confidence 855589999999999999885
No 50
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.67 E-value=5.1e-16 Score=115.84 Aligned_cols=94 Identities=32% Similarity=0.742 Sum_probs=80.3
Q ss_pred cChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCC-CceEEEEEeCCcccc--ccCCcccccEEEEEeCCCc
Q psy7938 180 SNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADR-DDITIAKIDATVNEL--EHTKITSFPTLKLYAKDDN 256 (305)
Q Consensus 180 ~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f~~g~~ 256 (305)
++|++. ..++.++|.||++||++|+.+.|.|+++++.++.. ..+.++.+|++.... ++++|.++||+++|++| .
T Consensus 7 ~~~~~~--~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~-~ 83 (104)
T cd03000 7 DSFKDV--RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD-L 83 (104)
T ss_pred hhhhhh--ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC-C
Confidence 677764 34679999999999999999999999999999642 369999999987554 79999999999999765 3
Q ss_pred eEEeeeCCCCHHHHHHHHHhc
Q psy7938 257 RVIDYNGERVLEALSNFVESG 277 (305)
Q Consensus 257 ~~~~~~g~~~~~~l~~fi~~~ 277 (305)
...|.|..+.+.|.+|+++.
T Consensus 84 -~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 84 -AYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred -ceeecCCCCHHHHHHHHHhh
Confidence 57799999999999999864
No 51
>KOG0191|consensus
Probab=99.67 E-value=5.3e-17 Score=148.72 Aligned_cols=213 Identities=24% Similarity=0.391 Sum_probs=150.9
Q ss_pred ceecCCCCCCCCh-hHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEE
Q psy7938 18 MAKYKPATPEINV-DTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTI 96 (305)
Q Consensus 18 ~~~~~~~~~~~~~-~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v 96 (305)
++.+...+++..+ .....|++.||+|||+||+.+.|.|..++..++ . .+.+.++.+
T Consensus 146 v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~----------------------~-~~~v~~~~~ 202 (383)
T KOG0191|consen 146 VFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLK----------------------S-KENVELGKI 202 (383)
T ss_pred eEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhc----------------------c-CcceEEEee
Confidence 5666555555433 456779999999999999999999999866552 1 478999999
Q ss_pred eCCchhHHHHHHHcCCCCCCCCeEEEEecCcC-ceeccCCCCCCCHHHHHHHHHHHHcCcc-cccccCCCCCCccccCCc
Q psy7938 97 NTDEEDHQKILEFFGMSKDEVPSLRLIRLEED-MAKYKPATPEISVDTVRSFVTEFLAGNL-KQHLLSQPLPEDWDKNAV 174 (305)
Q Consensus 97 d~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~-~~~~~~~~~~~~~~~l~~fv~~~~~~~~-~~~~~s~~~p~~~~~~~v 174 (305)
||+ .+..+|++++|+ ++||+.+|..+.. ...| .+.++.+.+.+|+.+...... .+...+..-++. ...
T Consensus 203 d~~--~~~~~~~~~~v~--~~Pt~~~f~~~~~~~~~~---~~~R~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~---~~~ 272 (383)
T KOG0191|consen 203 DAT--VHKSLASRLEVR--GYPTLKLFPPGEEDIYYY---SGLRDSDSIVSFVEKKERRNIPEPELKEIEDKDT---FSP 272 (383)
T ss_pred ccc--hHHHHhhhhccc--CCceEEEecCCCcccccc---cccccHHHHHHHHHhhcCCCCCCcccccccCccc---ccc
Confidence 999 889999999998 9999999998866 2222 478999999999999865431 111111111100 001
Q ss_pred EEecccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHH-hCCCCceEEEEEeCCcccc--ccCCcccccEEEEE
Q psy7938 175 KVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEK-FADRDDITIAKIDATVNEL--EHTKITSFPTLKLY 251 (305)
Q Consensus 175 ~~l~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~-~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f 251 (305)
..++.++|.... ......++.|+++||++|....|.+...+.. +.....+.+.+++|..-.. ....++.+|++.++
T Consensus 273 ~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 351 (383)
T KOG0191|consen 273 TFLDTAEFLDSL-EKKKNKFVKFYAPWCGHCGGFAPVYEDKAELGYPDLSKIKAAKLDCALLKSLCQKAIVRGYPTIKLY 351 (383)
T ss_pred chhhhhhhhhhh-HHhhhhHhhhhcchhhcccccchhHHHHHhccccccccceeeccccccccchhhHhhhhcCceeEee
Confidence 111112222221 2445789999999999999999999999988 3334578888888876553 67788999999999
Q ss_pred eCCCceEEeeeCCC
Q psy7938 252 AKDDNRVIDYNGER 265 (305)
Q Consensus 252 ~~g~~~~~~~~g~~ 265 (305)
..+.. +....|..
T Consensus 352 ~~~~~-~~~~~~~~ 364 (383)
T KOG0191|consen 352 NYGKN-PSNIVGLI 364 (383)
T ss_pred ccccc-cccccCce
Confidence 88765 44455443
No 52
>KOG0907|consensus
Probab=99.66 E-value=5.6e-16 Score=114.82 Aligned_cols=86 Identities=31% Similarity=0.627 Sum_probs=72.8
Q ss_pred hcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc--cccCCcccccEEEEEeCCCceEEeeeCC
Q psy7938 187 FDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE--LEHTKITSFPTLKLYAKDDNRVIDYNGE 264 (305)
Q Consensus 187 ~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~--~~~~~i~~~Ptl~~f~~g~~~~~~~~g~ 264 (305)
...++.++|+|||+|||+|+.+.|.+.++|.+|. ++.|+++|++++. +.+++|..+||+++|++|.. ...+.|.
T Consensus 18 ~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~---~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~-~~~~vGa 93 (106)
T KOG0907|consen 18 EAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYP---DVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEE-VDEVVGA 93 (106)
T ss_pred hCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCC---CCEEEEEecccCHhHHHhcCceEeeEEEEEECCEE-EEEEecC
Confidence 4456899999999999999999999999999994 4999999999733 28999999999999998876 7888886
Q ss_pred CCHHHHHHHHHhc
Q psy7938 265 RVLEALSNFVESG 277 (305)
Q Consensus 265 ~~~~~l~~fi~~~ 277 (305)
.. ..+.+.|.++
T Consensus 94 ~~-~~l~~~i~~~ 105 (106)
T KOG0907|consen 94 NK-AELEKKIAKH 105 (106)
T ss_pred CH-HHHHHHHHhc
Confidence 44 4777777654
No 53
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.65 E-value=1.7e-15 Score=112.31 Aligned_cols=94 Identities=12% Similarity=0.100 Sum_probs=83.2
Q ss_pred cEEecccChhHHHhcCCCcEEEEEECCC--ChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEE
Q psy7938 174 VKVLVASNFDEIAFDKSKHVLVEFYAPW--CGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLK 249 (305)
Q Consensus 174 v~~l~~~~f~~~v~~~~~~~lv~f~~~~--C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~ 249 (305)
.-.++..+|++.+ +.+..++|.||++| |++|+.+.|.+.++++.+. +.+.|+++|++.+.. .+|+|.++||++
T Consensus 12 ~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~--~~v~f~kVdid~~~~la~~f~V~sIPTli 88 (111)
T cd02965 12 WPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFP--GRFRAAVVGRADEQALAARFGVLRTPALL 88 (111)
T ss_pred CcccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCC--CcEEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence 5567889999877 77899999999997 9999999999999999995 468899999998876 899999999999
Q ss_pred EEeCCCceEEeeeCCCCHHHHH
Q psy7938 250 LYAKDDNRVIDYNGERVLEALS 271 (305)
Q Consensus 250 ~f~~g~~~~~~~~g~~~~~~l~ 271 (305)
+|++|+. ...+.|..+.+.+.
T Consensus 89 ~fkdGk~-v~~~~G~~~~~e~~ 109 (111)
T cd02965 89 FFRDGRY-VGVLAGIRDWDEYV 109 (111)
T ss_pred EEECCEE-EEEEeCccCHHHHh
Confidence 9999855 78889988887765
No 54
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.65 E-value=1.5e-17 Score=124.99 Aligned_cols=105 Identities=15% Similarity=0.277 Sum_probs=80.4
Q ss_pred ceecCCCCCCCChhHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEe
Q psy7938 18 MAKYKPATPEINVDTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTIN 97 (305)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd 97 (305)
+.+++.++|+..+++.+.+++.||||||++|+.+.|.|.+++..++. .....+.+.|++||
T Consensus 3 v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~-------------------~~~~~~~~~~~~vd 63 (108)
T cd02996 3 IVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKE-------------------EFPDAGKVVWGKVD 63 (108)
T ss_pred eEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhh-------------------ccCCCCcEEEEEEE
Confidence 45566566665556667789999999999999999988887544421 00002469999999
Q ss_pred CCchhHHHHHHHcCCCCCCCCeEEEEecCcC-ceeccCCCCCCCHHHHHHHH
Q psy7938 98 TDEEDHQKILEFFGMSKDEVPSLRLIRLEED-MAKYKPATPEISVDTVRSFV 148 (305)
Q Consensus 98 ~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~-~~~~~~~~~~~~~~~l~~fv 148 (305)
|+ ++.++|++|||+ ++||+++|+.|.. ...| .|.++.++|.+|+
T Consensus 64 ~d--~~~~l~~~~~v~--~~Ptl~~~~~g~~~~~~~---~g~~~~~~l~~fi 108 (108)
T cd02996 64 CD--KESDIADRYRIN--KYPTLKLFRNGMMMKREY---RGQRSVEALAEFV 108 (108)
T ss_pred CC--CCHHHHHhCCCC--cCCEEEEEeCCcCcceec---CCCCCHHHHHhhC
Confidence 99 788999999998 9999999998863 3455 3788999999885
No 55
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.65 E-value=5.8e-17 Score=122.82 Aligned_cols=107 Identities=14% Similarity=0.222 Sum_probs=82.5
Q ss_pred ccCceecCCCCCCCChh-HHHHHhhhhhcCcccc--cc--cccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCc
Q psy7938 15 EEDMAKYKPATPEINVD-TVRSFVTEFLAGNLKH--SK--FKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNL 89 (305)
Q Consensus 15 ~~~~~~~~~~~~~~~~~-~~~~~iv~f~a~wc~~--c~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (305)
++++..++.++|+..+. +...+++.||++||+| |+ .++|.+.+.+... .+ .+
T Consensus 8 ~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~----------------------l~-~~ 64 (120)
T cd03065 8 KDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQV----------------------LE-DK 64 (120)
T ss_pred CcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHH----------------------hh-cC
Confidence 35677777777775553 3456777789999987 99 6677666662222 11 36
Q ss_pred eEEEEEEeCCchhHHHHHHHcCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHHH
Q psy7938 90 KVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFL 152 (305)
Q Consensus 90 ~v~~~~vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~~ 152 (305)
++.|++||++ +++.||++|||+ ++||+++|++|+.+. | .|.++.+.|.+|+.+.+
T Consensus 65 ~v~~~kVD~d--~~~~La~~~~I~--~iPTl~lfk~G~~v~-~---~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 65 GIGFGLVDSK--KDAKVAKKLGLD--EEDSIYVFKDDEVIE-Y---DGEFAADTLVEFLLDLI 119 (120)
T ss_pred CCEEEEEeCC--CCHHHHHHcCCc--cccEEEEEECCEEEE-e---eCCCCHHHHHHHHHHHh
Confidence 7999999999 889999999998 999999999987544 6 47889999999999764
No 56
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.64 E-value=2.1e-17 Score=123.33 Aligned_cols=84 Identities=13% Similarity=0.111 Sum_probs=70.4
Q ss_pred HHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCC
Q psy7938 33 VRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGM 112 (305)
Q Consensus 33 ~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I 112 (305)
...+++.|||+||++|+.+.|.|.++ +.++++.+.|++|||+ ++.++|+++||
T Consensus 19 ~~~v~v~f~a~wC~~C~~~~p~~~~~-------------------------~~~~~~~~~~~~vd~~--~~~~~~~~~~i 71 (104)
T cd03004 19 KEPWLVDFYAPWCGPCQALLPELRKA-------------------------ARALKGKVKVGSVDCQ--KYESLCQQANI 71 (104)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHH-------------------------HHHhcCCcEEEEEECC--chHHHHHHcCC
Confidence 34789999999999999999988887 3344577999999999 88999999999
Q ss_pred CCCCCCeEEEEecC-cCceeccCCCCCCC-HHHHHHHH
Q psy7938 113 SKDEVPSLRLIRLE-EDMAKYKPATPEIS-VDTVRSFV 148 (305)
Q Consensus 113 ~~~~~Ptl~~~~~~-~~~~~~~~~~~~~~-~~~l~~fv 148 (305)
+ ++||+++|+.| +....|. |..+ .++|.+|+
T Consensus 72 ~--~~Pt~~~~~~g~~~~~~~~---G~~~~~~~l~~~i 104 (104)
T cd03004 72 R--AYPTIRLYPGNASKYHSYN---GWHRDADSILEFI 104 (104)
T ss_pred C--cccEEEEEcCCCCCceEcc---CCCCCHHHHHhhC
Confidence 8 99999999988 5556663 5665 88898875
No 57
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.64 E-value=2.1e-15 Score=119.27 Aligned_cols=90 Identities=24% Similarity=0.485 Sum_probs=77.4
Q ss_pred CCcEEecccChhHHHh-cCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCccc----
Q psy7938 172 NAVKVLVASNFDEIAF-DKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITS---- 244 (305)
Q Consensus 172 ~~v~~l~~~~f~~~v~-~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~---- 244 (305)
..+..++.++|++.+. +.+++++|.||++||++|+.+.|.|+++++.+.+ .++.+++||++.+.. .+++|++
T Consensus 28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~-~~v~f~~VDvd~~~~la~~~~V~~~~~v 106 (152)
T cd02962 28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN-NNLKFGKIDIGRFPNVAEKFRVSTSPLS 106 (152)
T ss_pred CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc-CCeEEEEEECCCCHHHHHHcCceecCCc
Confidence 4589999999999874 4457999999999999999999999999999853 469999999998775 7888887
Q ss_pred --ccEEEEEeCCCceEEeeeC
Q psy7938 245 --FPTLKLYAKDDNRVIDYNG 263 (305)
Q Consensus 245 --~Ptl~~f~~g~~~~~~~~g 263 (305)
+||+++|++|+. ..++.|
T Consensus 107 ~~~PT~ilf~~Gk~-v~r~~G 126 (152)
T cd02962 107 KQLPTIILFQGGKE-VARRPY 126 (152)
T ss_pred CCCCEEEEEECCEE-EEEEec
Confidence 999999998765 777776
No 58
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.64 E-value=2.2e-15 Score=113.88 Aligned_cols=98 Identities=23% Similarity=0.333 Sum_probs=80.9
Q ss_pred CCcEEecc-cChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEE
Q psy7938 172 NAVKVLVA-SNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTL 248 (305)
Q Consensus 172 ~~v~~l~~-~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl 248 (305)
+.+..+++ .+|.+.+ .+++.++|.||++||++|+.+.|.++++++.+. ++.|++||++.+.. ++++|.++||+
T Consensus 4 g~v~~i~~~~~~~~~i-~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~---~i~f~~Vd~~~~~~l~~~~~v~~vPt~ 79 (113)
T cd02989 4 GKYREVSDEKEFFEIV-KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL---ETKFIKVNAEKAPFLVEKLNIKVLPTV 79 (113)
T ss_pred CCeEEeCCHHHHHHHH-hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC---CCEEEEEEcccCHHHHHHCCCccCCEE
Confidence 34778877 8888887 456899999999999999999999999999884 58999999999874 89999999999
Q ss_pred EEEeCCCceEEeeeCC--------CCHHHHHHHH
Q psy7938 249 KLYAKDDNRVIDYNGE--------RVLEALSNFV 274 (305)
Q Consensus 249 ~~f~~g~~~~~~~~g~--------~~~~~l~~fi 274 (305)
++|++|.. ..++.|. .+.+++.+|+
T Consensus 80 l~fk~G~~-v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 80 ILFKNGKT-VDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEEECCEE-EEEEECccccCCCCCCCHHHHHHHh
Confidence 99999865 5566553 3455666654
No 59
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.63 E-value=8.8e-17 Score=120.37 Aligned_cols=102 Identities=11% Similarity=0.121 Sum_probs=81.6
Q ss_pred ceecCCCCCCCChhHHHHHhhhhhc--Cccc---ccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEE
Q psy7938 18 MAKYKPATPEINVDTVRSFVTEFLA--GNLK---HSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVL 92 (305)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~iv~f~a--~wc~---~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 92 (305)
++.++..+|+..+++.+.++|+||| |||+ +|+.++|.|... ...|.
T Consensus 3 ~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~a-----------------------------a~~v~ 53 (116)
T cd03007 3 CVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASA-----------------------------TDDLL 53 (116)
T ss_pred eeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhh-----------------------------cCceE
Confidence 5677888888888888999999999 9999 888776555443 24588
Q ss_pred EEEEeCCc---hhHHHHHHHcCCCCCCCCeEEEEecCc--CceeccCCCCC-CCHHHHHHHHHHH
Q psy7938 93 FVTINTDE---EDHQKILEFFGMSKDEVPSLRLIRLEE--DMAKYKPATPE-ISVDTVRSFVTEF 151 (305)
Q Consensus 93 ~~~vd~~~---~~~~~l~~~~~I~~~~~Ptl~~~~~~~--~~~~~~~~~~~-~~~~~l~~fv~~~ 151 (305)
+++|||++ .++.+||++|||+.++||||.+|+.|+ ....| .|. ++.++|.+|+.+.
T Consensus 54 lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y---~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 54 VAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFHGGDFENPVPY---SGADVTVDALQRFLKGN 115 (116)
T ss_pred EEEEecccccchhhHHHHHHhCCCcCCCCEEEEEeCCCcCCCccC---CCCcccHHHHHHHHHhc
Confidence 99999953 267899999999656899999999884 33456 365 9999999999864
No 60
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.62 E-value=4.5e-15 Score=120.64 Aligned_cols=104 Identities=18% Similarity=0.260 Sum_probs=86.6
Q ss_pred ccCCcEEecc-cChhHHHhcCC--CcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc-ccCCcccc
Q psy7938 170 DKNAVKVLVA-SNFDEIAFDKS--KHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL-EHTKITSF 245 (305)
Q Consensus 170 ~~~~v~~l~~-~~f~~~v~~~~--~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~-~~~~i~~~ 245 (305)
..+.|..++. .+|.+.+..++ .+++|+||++||++|+.+.|.|.++|..+. .+.|++||++.+.. ..|+|.++
T Consensus 60 ~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~---~vkF~kVd~d~~~l~~~f~v~~v 136 (175)
T cd02987 60 RFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP---AVKFCKIRASATGASDEFDTDAL 136 (175)
T ss_pred CCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC---CeEEEEEeccchhhHHhCCCCCC
Confidence 3456999988 99999986544 489999999999999999999999999983 69999999998754 89999999
Q ss_pred cEEEEEeCCCceEEeeeC-------CCCHHHHHHHHHhc
Q psy7938 246 PTLKLYAKDDNRVIDYNG-------ERVLEALSNFVESG 277 (305)
Q Consensus 246 Ptl~~f~~g~~~~~~~~g-------~~~~~~l~~fi~~~ 277 (305)
||+++|++|.. ..++.| ..+.+.|..||.++
T Consensus 137 PTlllyk~G~~-v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 137 PALLVYKGGEL-IGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred CEEEEEECCEE-EEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 99999999865 555554 45677888887764
No 61
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.62 E-value=4.7e-17 Score=120.90 Aligned_cols=100 Identities=15% Similarity=0.247 Sum_probs=82.8
Q ss_pred ecCCCCCCCChhH-HHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeC
Q psy7938 20 KYKPATPEINVDT-VRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINT 98 (305)
Q Consensus 20 ~~~~~~~~~~~~~-~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~ 98 (305)
.++.++|+..+.+ ..++|+.||++||++|+.+.|.+.++ ...+.+.+.|+.||+
T Consensus 3 ~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~-------------------------~~~~~~~v~~~~vd~ 57 (103)
T PF00085_consen 3 VLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKL-------------------------AKEYKDNVKFAKVDC 57 (103)
T ss_dssp EESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHH-------------------------HHHTTTTSEEEEEET
T ss_pred ECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccc-------------------------ccccccccccchhhh
Confidence 3444555544444 68899999999999999999988888 334445899999999
Q ss_pred CchhHHHHHHHcCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHH
Q psy7938 99 DEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEF 151 (305)
Q Consensus 99 ~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~ 151 (305)
+ ++..+|++|+|+ ++||+++|+.|+...+| .|.++.++|.+|++++
T Consensus 58 ~--~~~~l~~~~~v~--~~Pt~~~~~~g~~~~~~---~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 58 D--ENKELCKKYGVK--SVPTIIFFKNGKEVKRY---NGPRNAESLIEFIEKH 103 (103)
T ss_dssp T--TSHHHHHHTTCS--SSSEEEEEETTEEEEEE---ESSSSHHHHHHHHHHH
T ss_pred h--ccchhhhccCCC--CCCEEEEEECCcEEEEE---ECCCCHHHHHHHHHcC
Confidence 9 889999999998 99999999999876777 3778999999999864
No 62
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.61 E-value=2.5e-15 Score=112.11 Aligned_cols=93 Identities=19% Similarity=0.364 Sum_probs=77.5
Q ss_pred cChhHHHhcCCCcEEEEEECCCChhhhhHHHHH---HHHHHHhCCCCceEEEEEeCCccc----c--ccCCcccccEEEE
Q psy7938 180 SNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIY---DKLGEKFADRDDITIAKIDATVNE----L--EHTKITSFPTLKL 250 (305)
Q Consensus 180 ~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~id~~~~~----~--~~~~i~~~Ptl~~ 250 (305)
+.|.+.+ .++++++|.||++||++|+.+.+.+ .+++..+.+ ++.++.+|++.+. . .+++|+++||+++
T Consensus 2 ~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 2 AALAQAL-AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK--DVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHHH-HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC--CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 3566655 5689999999999999999999988 678888853 7999999987642 1 7899999999999
Q ss_pred EeC-CCceEEeeeCCCCHHHHHHHHH
Q psy7938 251 YAK-DDNRVIDYNGERVLEALSNFVE 275 (305)
Q Consensus 251 f~~-g~~~~~~~~g~~~~~~l~~fi~ 275 (305)
|++ +++.+.++.|..+.+.|.++|.
T Consensus 79 ~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 79 YGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred ECCCCCCCCcccccccCHHHHHHHhC
Confidence 996 4445889999999999998873
No 63
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.61 E-value=1.3e-16 Score=118.40 Aligned_cols=98 Identities=9% Similarity=0.153 Sum_probs=75.9
Q ss_pred ceecCCCCCCCChhHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEe
Q psy7938 18 MAKYKPATPEINVDTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTIN 97 (305)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd 97 (305)
+++++.++|+..+++ .+++.|||+||++|+.+.|.|.+++...+ ...+.|++||
T Consensus 3 v~~l~~~~f~~~~~~--~~lv~f~a~wC~~C~~~~p~~~~l~~~~~------------------------~~~v~~~~vd 56 (101)
T cd02994 3 VVELTDSNWTLVLEG--EWMIEFYAPWCPACQQLQPEWEEFADWSD------------------------DLGINVAKVD 56 (101)
T ss_pred eEEcChhhHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHhhc------------------------cCCeEEEEEE
Confidence 445555555544433 27899999999999999999888833221 1358999999
Q ss_pred CCchhHHHHHHHcCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHH
Q psy7938 98 TDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVT 149 (305)
Q Consensus 98 ~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~ 149 (305)
|+ ++..++++|+|. ++||+++|..|. ...| .|.++.++|.+|++
T Consensus 57 ~~--~~~~~~~~~~i~--~~Pt~~~~~~g~-~~~~---~G~~~~~~l~~~i~ 100 (101)
T cd02994 57 VT--QEPGLSGRFFVT--ALPTIYHAKDGV-FRRY---QGPRDKEDLISFIE 100 (101)
T ss_pred cc--CCHhHHHHcCCc--ccCEEEEeCCCC-EEEe---cCCCCHHHHHHHHh
Confidence 99 788999999998 999999998775 3555 37889999999986
No 64
>PHA02278 thioredoxin-like protein
Probab=99.60 E-value=7.4e-17 Score=119.42 Aligned_cols=88 Identities=18% Similarity=0.331 Sum_probs=69.2
Q ss_pred hhHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchh--HHHHH
Q psy7938 30 VDTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEED--HQKIL 107 (305)
Q Consensus 30 ~~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~--~~~l~ 107 (305)
+.+..+++++|||+|||||+.++|.+.++++. +.+++.|++||++... +..++
T Consensus 11 i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~-------------------------~~~~~~~~~vdvd~~~~d~~~l~ 65 (103)
T PHA02278 11 IRQKKDVIVMITQDNCGKCEILKSVIPMFQES-------------------------GDIKKPILTLNLDAEDVDREKAV 65 (103)
T ss_pred HhCCCcEEEEEECCCCHHHHhHHHHHHHHHhh-------------------------hcCCceEEEEECCccccccHHHH
Confidence 34557889999999999999999999988332 2345778999999321 26899
Q ss_pred HHcCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHH
Q psy7938 108 EFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSF 147 (305)
Q Consensus 108 ~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~f 147 (305)
++|+|. ++||+++|+.|+.+.+.. |..+.+.|.++
T Consensus 66 ~~~~I~--~iPT~i~fk~G~~v~~~~---G~~~~~~l~~~ 100 (103)
T PHA02278 66 KLFDIM--STPVLIGYKDGQLVKKYE---DQVTPMQLQEL 100 (103)
T ss_pred HHCCCc--cccEEEEEECCEEEEEEe---CCCCHHHHHhh
Confidence 999998 999999999998766773 56777777664
No 65
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.60 E-value=9.1e-15 Score=113.39 Aligned_cols=98 Identities=14% Similarity=0.169 Sum_probs=81.5
Q ss_pred ccChhHHHh-cCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEE-EEeCC
Q psy7938 179 ASNFDEIAF-DKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLK-LYAKD 254 (305)
Q Consensus 179 ~~~f~~~v~-~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~-~f~~g 254 (305)
..+|++.+. ..+++++|.||++||++|+.+.|.++++|+.+. +.+.|++||.+++.. ..|+|++.|+++ +|++|
T Consensus 11 ~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~--~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g 88 (142)
T PLN00410 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIK--NFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNK 88 (142)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcC--CceEEEEEECCCCHHHHHHcCccCCCcEEEEEECC
Confidence 478888775 457899999999999999999999999999994 357889999999776 899999777666 88888
Q ss_pred CceEEeeeC--------CCCHHHHHHHHHhcC
Q psy7938 255 DNRVIDYNG--------ERVLEALSNFVESGG 278 (305)
Q Consensus 255 ~~~~~~~~g--------~~~~~~l~~fi~~~~ 278 (305)
.....+..| ..+.+.|.+-+....
T Consensus 89 ~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~ 120 (142)
T PLN00410 89 HIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
T ss_pred eEEEEEecccccccccccCCHHHHHHHHHHHH
Confidence 645777888 567788888777654
No 66
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.60 E-value=1.1e-14 Score=107.11 Aligned_cols=91 Identities=23% Similarity=0.534 Sum_probs=79.7
Q ss_pred hhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEEEeCCCceEE
Q psy7938 182 FDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLYAKDDNRVI 259 (305)
Q Consensus 182 f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f~~g~~~~~ 259 (305)
++..+.+.++++++.||++||+.|+.+.+.++++++.+. +++.++.+|++.+.. .+++|.++|++++|++|+. ..
T Consensus 5 ~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~--~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~-v~ 81 (97)
T cd02949 5 LRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFD--GAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKEL-VK 81 (97)
T ss_pred HHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhC--CceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeE-EE
Confidence 455666788999999999999999999999999999985 369999999987764 8999999999999987644 88
Q ss_pred eeeCCCCHHHHHHHHH
Q psy7938 260 DYNGERVLEALSNFVE 275 (305)
Q Consensus 260 ~~~g~~~~~~l~~fi~ 275 (305)
++.|..+.+.|.+||+
T Consensus 82 ~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 82 EISGVKMKSEYREFIE 97 (97)
T ss_pred EEeCCccHHHHHHhhC
Confidence 8999999999999874
No 67
>KOG0908|consensus
Probab=99.59 E-value=8.1e-15 Score=120.61 Aligned_cols=111 Identities=25% Similarity=0.461 Sum_probs=92.1
Q ss_pred cEEe-cccChhHHH-hcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEE
Q psy7938 174 VKVL-VASNFDEIA-FDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLK 249 (305)
Q Consensus 174 v~~l-~~~~f~~~v-~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~ 249 (305)
|+.+ ++.+|...+ ....+.++|+|++.|||+|+...|.|..+++.|+ ..+|.+||.++... ..++|..+||++
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp---~aVFlkVdVd~c~~taa~~gV~amPTFi 79 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP---GAVFLKVDVDECRGTAATNGVNAMPTFI 79 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc---ccEEEEEeHHHhhchhhhcCcccCceEE
Confidence 5555 346777776 3445799999999999999999999999999994 68999999998775 899999999999
Q ss_pred EEeCCCceEEeeeCCCCHHHHHHHHHhcCCCCCCCCCCCC
Q psy7938 250 LYAKDDNRVIDYNGERVLEALSNFVESGGKEGGLPSGAQQ 289 (305)
Q Consensus 250 ~f~~g~~~~~~~~g~~~~~~l~~fi~~~~~~~~~~~~~~~ 289 (305)
+|.+|.+ +..+.|. +...|..-+.+++...+...+.+.
T Consensus 80 ff~ng~k-id~~qGA-d~~gLe~kv~~~~stsaa~~~~~~ 117 (288)
T KOG0908|consen 80 FFRNGVK-IDQIQGA-DASGLEEKVAKYASTSAASSGTGD 117 (288)
T ss_pred EEecCeE-eeeecCC-CHHHHHHHHHHHhccCcccccCCC
Confidence 9999976 7778876 677899999998877766665544
No 68
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.59 E-value=3.2e-16 Score=116.99 Aligned_cols=72 Identities=7% Similarity=0.027 Sum_probs=63.0
Q ss_pred HHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCC
Q psy7938 33 VRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGM 112 (305)
Q Consensus 33 ~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I 112 (305)
...++++|||+||+||+.++|.++++ +.++.+.+.|++||++ ++++++++|||
T Consensus 14 ~~~vVV~F~A~WCgpCk~m~P~le~l-------------------------a~~~~~~v~f~kVDvD--~~~~la~~~~V 66 (114)
T cd02954 14 EKVVVIRFGRDWDPVCMQMDEVLAKI-------------------------AEDVSNFAVIYLVDID--EVPDFNKMYEL 66 (114)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHH-------------------------HHHccCceEEEEEECC--CCHHHHHHcCC
Confidence 44689999999999999999999999 4445577899999999 89999999999
Q ss_pred CCCCCCeEEEEecCcCceecc
Q psy7938 113 SKDEVPSLRLIRLEEDMAKYK 133 (305)
Q Consensus 113 ~~~~~Ptl~~~~~~~~~~~~~ 133 (305)
. ++||+++|+.|+.+.+..
T Consensus 67 ~--~iPTf~~fk~G~~v~~~~ 85 (114)
T cd02954 67 Y--DPPTVMFFFRNKHMKIDL 85 (114)
T ss_pred C--CCCEEEEEECCEEEEEEc
Confidence 8 999999999997765554
No 69
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.5e-16 Score=133.66 Aligned_cols=105 Identities=14% Similarity=0.177 Sum_probs=87.8
Q ss_pred ceecCCCCCCCC--hhHHH-HHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEE
Q psy7938 18 MAKYKPATPEIN--VDTVR-SFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFV 94 (305)
Q Consensus 18 ~~~~~~~~~~~~--~~~~~-~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 94 (305)
+.+.+.++|+.. ..+.. ++||+||+|||+||+.+.|.++.+ ...++|++.++
T Consensus 25 I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekl-------------------------a~~~~G~f~La 79 (304)
T COG3118 25 IKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKL-------------------------AAEYKGKFKLA 79 (304)
T ss_pred ceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHH-------------------------HHHhCCceEEE
Confidence 444555555522 34444 999999999999999999998888 56668999999
Q ss_pred EEeCCchhHHHHHHHcCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHHHcC
Q psy7938 95 TINTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFLAG 154 (305)
Q Consensus 95 ~vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~~~~ 154 (305)
+|||| +.+.++.+|||+ ++||++.|..|..+..| .|....+.+++|+..++..
T Consensus 80 kvN~D--~~p~vAaqfgiq--sIPtV~af~dGqpVdgF---~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 80 KVNCD--AEPMVAAQFGVQ--SIPTVYAFKDGQPVDGF---QGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EecCC--cchhHHHHhCcC--cCCeEEEeeCCcCcccc---CCCCcHHHHHHHHHHhcCh
Confidence 99999 889999999998 99999999999888888 4677788999999999754
No 70
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.59 E-value=9.5e-15 Score=107.40 Aligned_cols=92 Identities=25% Similarity=0.457 Sum_probs=76.1
Q ss_pred ccChhHHHhcC-CCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEEEeCCC
Q psy7938 179 ASNFDEIAFDK-SKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLYAKDD 255 (305)
Q Consensus 179 ~~~f~~~v~~~-~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f~~g~ 255 (305)
.++|++.+... ++.++|.||++||++|+.+.+.+++++..+ ...+.++++|++.+.. .+++++++||+++|++|+
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~--~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 79 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEA--FPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT 79 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHh--CCceEEEEEccccCHHHHHhcCCccccEEEEEECCE
Confidence 35677777544 689999999999999999999999999997 3589999999987664 899999999999998764
Q ss_pred ceEEeeeCCCCHHHHHHHH
Q psy7938 256 NRVIDYNGERVLEALSNFV 274 (305)
Q Consensus 256 ~~~~~~~g~~~~~~l~~fi 274 (305)
. ..++.|. +.+.|.+.|
T Consensus 80 ~-~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 80 I-VDRVSGA-DPKELAKKV 96 (97)
T ss_pred E-EEEEeCC-CHHHHHHhh
Confidence 3 6667775 566777665
No 71
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.58 E-value=4.1e-16 Score=117.26 Aligned_cols=99 Identities=22% Similarity=0.311 Sum_probs=75.4
Q ss_pred ecCCCCCCCCh-hHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeC
Q psy7938 20 KYKPATPEINV-DTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINT 98 (305)
Q Consensus 20 ~~~~~~~~~~~-~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~ 98 (305)
+++.++++..+ ++..++++.|||+||++|+.+.|.+.+++ ..+.+.+.|+.+||
T Consensus 4 ~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a-------------------------~~~~~~~~~~~v~~ 58 (109)
T cd03002 4 ELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAA-------------------------KELDGLVQVAAVDC 58 (109)
T ss_pred EcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHH-------------------------HHhcCCceEEEEec
Confidence 34444444333 23455899999999999999998888773 33346789999999
Q ss_pred CchhHHHHHHHcCCCCCCCCeEEEEecCcC-----ceeccCCCCCCCHHHHHHHH
Q psy7938 99 DEEDHQKILEFFGMSKDEVPSLRLIRLEED-----MAKYKPATPEISVDTVRSFV 148 (305)
Q Consensus 99 ~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~-----~~~~~~~~~~~~~~~l~~fv 148 (305)
+..++..+|++|+|. ++||+++|+.++. ...| .|.++.++|.+|+
T Consensus 59 ~~~~~~~~~~~~~i~--~~Pt~~~~~~~~~~~~~~~~~~---~G~~~~~~l~~fi 108 (109)
T cd03002 59 DEDKNKPLCGKYGVQ--GFPTLKVFRPPKKASKHAVEDY---NGERSAKAIVDFV 108 (109)
T ss_pred CccccHHHHHHcCCC--cCCEEEEEeCCCcccccccccc---cCccCHHHHHHHh
Confidence 954488999999998 9999999998852 2334 3789999999987
No 72
>KOG4277|consensus
Probab=99.58 E-value=2.5e-15 Score=126.73 Aligned_cols=92 Identities=36% Similarity=0.709 Sum_probs=82.2
Q ss_pred cCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCC-CceEEEEEeCCcccc--ccCCcccccEEEEEeCCCceEEeeeCC
Q psy7938 188 DKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADR-DDITIAKIDATVNEL--EHTKITSFPTLKLYAKDDNRVIDYNGE 264 (305)
Q Consensus 188 ~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f~~g~~~~~~~~g~ 264 (305)
..+..|+|.||||||+||+++.|.|.+++..+++. ..+.++++||..-.. .+++|++|||+.+|+++ ..+.|.|.
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd--~a~dYRG~ 118 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGD--HAIDYRGG 118 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCC--eeeecCCC
Confidence 34668999999999999999999999999999763 479999999998876 89999999999999987 57999999
Q ss_pred CCHHHHHHHHHhcCCCC
Q psy7938 265 RVLEALSNFVESGGKEG 281 (305)
Q Consensus 265 ~~~~~l~~fi~~~~~~~ 281 (305)
++.+.|+.|....+..-
T Consensus 119 R~Kd~iieFAhR~a~ai 135 (468)
T KOG4277|consen 119 REKDAIIEFAHRCAAAI 135 (468)
T ss_pred ccHHHHHHHHHhcccce
Confidence 99999999998876543
No 73
>KOG0907|consensus
Probab=99.58 E-value=6.8e-16 Score=114.35 Aligned_cols=84 Identities=13% Similarity=0.183 Sum_probs=70.6
Q ss_pred HHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCC
Q psy7938 33 VRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGM 112 (305)
Q Consensus 33 ~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I 112 (305)
.+..+++|||+|||||+.+.|.+.++ +.+|.+ +.|++||+| +...+|+.++|
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~L-------------------------a~~y~~-v~Flkvdvd--e~~~~~~~~~V 72 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKL-------------------------AEKYPD-VVFLKVDVD--ELEEVAKEFNV 72 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHH-------------------------HHHCCC-CEEEEEecc--cCHhHHHhcCc
Confidence 47778999999999999999999999 555556 999999999 48999999999
Q ss_pred CCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHH
Q psy7938 113 SKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTE 150 (305)
Q Consensus 113 ~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~ 150 (305)
+ ..|||++|+.|+...++. +.+.+.+.+.+..
T Consensus 73 ~--~~PTf~f~k~g~~~~~~v----Ga~~~~l~~~i~~ 104 (106)
T KOG0907|consen 73 K--AMPTFVFYKGGEEVDEVV----GANKAELEKKIAK 104 (106)
T ss_pred e--EeeEEEEEECCEEEEEEe----cCCHHHHHHHHHh
Confidence 8 999999999998877775 3445566666554
No 74
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.57 E-value=6e-16 Score=129.93 Aligned_cols=106 Identities=12% Similarity=0.093 Sum_probs=84.8
Q ss_pred cCceecCCCCCCCChhH-----HHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCce
Q psy7938 16 EDMAKYKPATPEINVDT-----VRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLK 90 (305)
Q Consensus 16 ~~~~~~~~~~~~~~~~~-----~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (305)
..+++++.++|+..+.. ..+|++.||||||+||+.+.|.|.++ +.++++.
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~l-------------------------a~~~~~~ 84 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERL-------------------------AKALKGQ 84 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHH-------------------------HHHcCCC
Confidence 45777776666643321 35799999999999999999998887 3444577
Q ss_pred EEEEEEeCCchhHHHHHHHcCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHHHc
Q psy7938 91 VLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFLA 153 (305)
Q Consensus 91 v~~~~vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~~~ 153 (305)
+.|+++||+ ++..++++|+|. ++||+++|+.|.....+ .|.++.++|.+|+.+.+.
T Consensus 85 v~~~~VD~~--~~~~l~~~~~I~--~~PTl~~f~~G~~v~~~---~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 85 VNVADLDAT--RALNLAKRFAIK--GYPTLLLFDKGKMYQYE---GGDRSTEKLAAFALGDFK 140 (224)
T ss_pred eEEEEecCc--ccHHHHHHcCCC--cCCEEEEEECCEEEEee---CCCCCHHHHHHHHHHHHH
Confidence 999999999 889999999998 99999999987543222 467899999999999874
No 75
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.57 E-value=1.3e-14 Score=107.43 Aligned_cols=95 Identities=16% Similarity=0.236 Sum_probs=75.2
Q ss_pred cChhHHHhc-CCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEEEeCCCc
Q psy7938 180 SNFDEIAFD-KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLYAKDDN 256 (305)
Q Consensus 180 ~~f~~~v~~-~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f~~g~~ 256 (305)
++|++.+.+ .+++++|.|+++||++|+.+.|.++++|..+++ .+.|++||.++... ++|+|+..||+++|++|++
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~--~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh 80 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK--MASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQH 80 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC--ceEEEEEeccccHHHHHhcCceeCcEEEEEECCcE
Confidence 456666654 488999999999999999999999999999942 39999999998876 8999999999999999977
Q ss_pred eEEeee-C--------CCCHHHHHHHHHh
Q psy7938 257 RVIDYN-G--------ERVLEALSNFVES 276 (305)
Q Consensus 257 ~~~~~~-g--------~~~~~~l~~fi~~ 276 (305)
..+.+. | ..+.++++.-++.
T Consensus 81 ~~~d~gt~~~~k~~~~~~~k~~~idi~e~ 109 (114)
T cd02986 81 MKVDYGSPDHTKFVGSFKTKQDFIDLIEV 109 (114)
T ss_pred EEEecCCCCCcEEEEEcCchhHHHHHHHH
Confidence 544442 1 1234666665543
No 76
>PTZ00051 thioredoxin; Provisional
Probab=99.57 E-value=2.8e-14 Score=105.15 Aligned_cols=92 Identities=32% Similarity=0.660 Sum_probs=74.9
Q ss_pred cEEecc-cChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEE
Q psy7938 174 VKVLVA-SNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKL 250 (305)
Q Consensus 174 v~~l~~-~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~ 250 (305)
|..+++ ++|.+.+ +.++.++|.||++||++|+.+.+.+.++++.+. ++.++.+|++.+.. .++++.++||+++
T Consensus 2 v~~i~~~~~~~~~~-~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 77 (98)
T PTZ00051 2 VHIVTSQAEFESTL-SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT---KMVFVKVDVDELSEVAEKENITSMPTFKV 77 (98)
T ss_pred eEEecCHHHHHHHH-hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC---CcEEEEEECcchHHHHHHCCCceeeEEEE
Confidence 455544 5666655 678899999999999999999999999999873 58999999987654 8999999999999
Q ss_pred EeCCCceEEeeeCCCCHHHHH
Q psy7938 251 YAKDDNRVIDYNGERVLEALS 271 (305)
Q Consensus 251 f~~g~~~~~~~~g~~~~~~l~ 271 (305)
|++|+. ...+.|. ..+.|.
T Consensus 78 ~~~g~~-~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 78 FKNGSV-VDTLLGA-NDEALK 96 (98)
T ss_pred EeCCeE-EEEEeCC-CHHHhh
Confidence 987755 7788885 445554
No 77
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.56 E-value=2.3e-14 Score=118.04 Aligned_cols=103 Identities=21% Similarity=0.299 Sum_probs=85.6
Q ss_pred ccCCcEEecccChhHHHhcCC--CcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccccccCCcccccE
Q psy7938 170 DKNAVKVLVASNFDEIAFDKS--KHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPT 247 (305)
Q Consensus 170 ~~~~v~~l~~~~f~~~v~~~~--~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~~~~~i~~~Pt 247 (305)
..+.|..++..+|...+..++ ..|+|+||++||++|+.+.|.|.++|..+. .+.|++||++.. ...|++.++||
T Consensus 80 ~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~---~vkFvkI~ad~~-~~~~~i~~lPT 155 (192)
T cd02988 80 KFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP---DTKFVKIISTQC-IPNYPDKNLPT 155 (192)
T ss_pred CCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC---CCEEEEEEhHHh-HhhCCCCCCCE
Confidence 346699999999998875543 489999999999999999999999999984 589999998754 47899999999
Q ss_pred EEEEeCCCceEEeeeC-------CCCHHHHHHHHHhc
Q psy7938 248 LKLYAKDDNRVIDYNG-------ERVLEALSNFVESG 277 (305)
Q Consensus 248 l~~f~~g~~~~~~~~g-------~~~~~~l~~fi~~~ 277 (305)
+++|++|.. +..+.| ..+.+.|..+|.+.
T Consensus 156 lliyk~G~~-v~~ivG~~~~gg~~~~~~~lE~~L~~~ 191 (192)
T cd02988 156 ILVYRNGDI-VKQFIGLLEFGGMNTTMEDLEWLLVQV 191 (192)
T ss_pred EEEEECCEE-EEEEeCchhhCCCCCCHHHHHHHHHhc
Confidence 999999865 566666 45677788777653
No 78
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.56 E-value=1.1e-15 Score=112.18 Aligned_cols=85 Identities=18% Similarity=0.236 Sum_probs=70.9
Q ss_pred HHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCC
Q psy7938 33 VRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGM 112 (305)
Q Consensus 33 ~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I 112 (305)
.+++++.||++||++|+.+.|.+.++ ..++.+.+.+++||++ ++..++++|+|
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~-------------------------~~~~~~~~~~~~vd~~--~~~~l~~~~~i 64 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERL-------------------------AEEYQGQFVLAKVNCD--AQPQIAQQFGV 64 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHH-------------------------HHHhCCcEEEEEEecc--CCHHHHHHcCC
Confidence 45889999999999999999888777 3344567899999999 88999999999
Q ss_pred CCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHH
Q psy7938 113 SKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVT 149 (305)
Q Consensus 113 ~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~ 149 (305)
. ++||+++|+.|....++ .|..+.++|.+|++
T Consensus 65 ~--~~Pt~~~~~~g~~~~~~---~g~~~~~~l~~~l~ 96 (96)
T cd02956 65 Q--ALPTVYLFAAGQPVDGF---QGAQPEEQLRQMLD 96 (96)
T ss_pred C--CCCEEEEEeCCEEeeee---cCCCCHHHHHHHhC
Confidence 8 99999999977654555 36788899998863
No 79
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.55 E-value=1.1e-15 Score=115.30 Aligned_cols=87 Identities=11% Similarity=0.148 Sum_probs=71.6
Q ss_pred HHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCc-eEEEEEEeCCchhHHHHHHHc
Q psy7938 32 TVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNL-KVLFVTINTDEEDHQKILEFF 110 (305)
Q Consensus 32 ~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~~~l~~~~ 110 (305)
..+++++.||||||++|+.+.|.+.++...+ ++ ++.|++|||+ ..+.++.++
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~-------------------------~~~~v~~~~vd~d--~~~~l~~~~ 75 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQEL-------------------------EPLGVGIATVNAG--HERRLARKL 75 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHH-------------------------HhcCceEEEEecc--ccHHHHHHc
Confidence 3578999999999999999999888873333 23 5889999999 778999999
Q ss_pred CCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHH
Q psy7938 111 GMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTE 150 (305)
Q Consensus 111 ~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~ 150 (305)
||. ++||+++|+.|+...++ .|..+.+.|.+|+.+
T Consensus 76 ~V~--~~Pt~~i~~~g~~~~~~---~G~~~~~~l~~~i~~ 110 (111)
T cd02963 76 GAH--SVPAIVGIINGQVTFYH---DSSFTKQHVVDFVRK 110 (111)
T ss_pred CCc--cCCEEEEEECCEEEEEe---cCCCCHHHHHHHHhc
Confidence 998 99999999987553444 367888999999874
No 80
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.55 E-value=6.6e-16 Score=114.64 Aligned_cols=85 Identities=21% Similarity=0.343 Sum_probs=68.4
Q ss_pred HHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCCC
Q psy7938 35 SFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMSK 114 (305)
Q Consensus 35 ~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~~ 114 (305)
.+++.|||+||++|+.+.|.+.+++..++ .....+.|++|||+ ++..+|++|+|.
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~----------------------~~~~~~~~~~vd~~--~~~~~~~~~~v~- 72 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFN----------------------NENPSVKIAKVDCT--QHRELCSEFQVR- 72 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHh----------------------ccCCcEEEEEEECC--CChhhHhhcCCC-
Confidence 48889999999999999988887733331 11136999999999 778999999998
Q ss_pred CCCCeEEEEecCcCceeccCCCCCCCHHHHHHHH
Q psy7938 115 DEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFV 148 (305)
Q Consensus 115 ~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv 148 (305)
++||+++|..|.....| .|.++.++|.+|+
T Consensus 73 -~~Pt~~~~~~g~~~~~~---~G~~~~~~l~~~i 102 (102)
T cd03005 73 -GYPTLLLFKDGEKVDKY---KGTRDLDSLKEFV 102 (102)
T ss_pred -cCCEEEEEeCCCeeeEe---eCCCCHHHHHhhC
Confidence 99999999888655566 3778888888875
No 81
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.53 E-value=1.1e-15 Score=112.96 Aligned_cols=83 Identities=14% Similarity=0.182 Sum_probs=67.7
Q ss_pred HHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCC
Q psy7938 33 VRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGM 112 (305)
Q Consensus 33 ~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I 112 (305)
.+.+++.|||+||++|+.+.|.+.+++.. ++ .+.+++||++. ++..++++|+|
T Consensus 18 g~~vlV~F~a~WC~~C~~~~p~l~~la~~-------------------------~~-~~~~~~vd~~~-~~~~l~~~~~V 70 (100)
T cd02999 18 EDYTAVLFYASWCPFSASFRPHFNALSSM-------------------------FP-QIRHLAIEESS-IKPSLLSRYGV 70 (100)
T ss_pred CCEEEEEEECCCCHHHHhHhHHHHHHHHH-------------------------hc-cCceEEEECCC-CCHHHHHhcCC
Confidence 35688999999999999999999988333 33 37788999862 35789999999
Q ss_pred CCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHH
Q psy7938 113 SKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFV 148 (305)
Q Consensus 113 ~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv 148 (305)
. ++||+++|+.| ...+| .|.++.++|.+|+
T Consensus 71 ~--~~PT~~lf~~g-~~~~~---~G~~~~~~l~~f~ 100 (100)
T cd02999 71 V--GFPTILLFNST-PRVRY---NGTRTLDSLAAFY 100 (100)
T ss_pred e--ecCEEEEEcCC-ceeEe---cCCCCHHHHHhhC
Confidence 8 99999999988 55666 3779999999885
No 82
>KOG0912|consensus
Probab=99.53 E-value=1.4e-14 Score=122.34 Aligned_cols=103 Identities=30% Similarity=0.618 Sum_probs=89.9
Q ss_pred cccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCC---CCceEEEEEeCCcccc--ccCCcccccEEEEEe
Q psy7938 178 VASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFAD---RDDITIAKIDATVNEL--EHTKITSFPTLKLYA 252 (305)
Q Consensus 178 ~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~---~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f~ 252 (305)
+..+++.++ ++...++|.|||+||+..+.+.|.|++.|..++. ++++++++|||+.++. .+|.|..|||+.+|.
T Consensus 2 t~~N~~~il-~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 2 TSENIDSIL-DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred ccccHHHhh-ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 456777766 5688999999999999999999999999988753 3689999999999886 899999999999999
Q ss_pred CCCceEEeeeCCCCHHHHHHHHHhcCCCC
Q psy7938 253 KDDNRVIDYNGERVLEALSNFVESGGKEG 281 (305)
Q Consensus 253 ~g~~~~~~~~g~~~~~~l~~fi~~~~~~~ 281 (305)
.|......|.|.++.+.|.+||+++...+
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~kq~s~~ 109 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIEKQLSDP 109 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHHHHhccH
Confidence 99664557999999999999999987644
No 83
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.53 E-value=1.5e-15 Score=112.85 Aligned_cols=83 Identities=17% Similarity=0.200 Sum_probs=69.1
Q ss_pred HHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCC
Q psy7938 34 RSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMS 113 (305)
Q Consensus 34 ~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~ 113 (305)
..+++.||++||++|+.+.|.|.++ +.++.+++.|+.+||+ ++..++++|+|.
T Consensus 19 ~~vlv~f~a~~C~~C~~~~~~~~~~-------------------------~~~~~~~~~~~~id~~--~~~~~~~~~~i~ 71 (103)
T cd03001 19 DVWLVEFYAPWCGHCKNLAPEWKKA-------------------------AKALKGIVKVGAVDAD--VHQSLAQQYGVR 71 (103)
T ss_pred CcEEEEEECCCCHHHHHHhHHHHHH-------------------------HHHhcCCceEEEEECc--chHHHHHHCCCC
Confidence 4588899999999999998888777 3334567999999999 889999999998
Q ss_pred CCCCCeEEEEecCcC-ceeccCCCCCCCHHHHHHHH
Q psy7938 114 KDEVPSLRLIRLEED-MAKYKPATPEISVDTVRSFV 148 (305)
Q Consensus 114 ~~~~Ptl~~~~~~~~-~~~~~~~~~~~~~~~l~~fv 148 (305)
++|++++|+.|.. ...| .|+++.++|.+|+
T Consensus 72 --~~P~~~~~~~~~~~~~~~---~g~~~~~~l~~~~ 102 (103)
T cd03001 72 --GFPTIKVFGAGKNSPQDY---QGGRTAKAIVSAA 102 (103)
T ss_pred --ccCEEEEECCCCcceeec---CCCCCHHHHHHHh
Confidence 9999999998732 2344 3789999999986
No 84
>PTZ00062 glutaredoxin; Provisional
Probab=99.53 E-value=1.4e-14 Score=119.66 Aligned_cols=145 Identities=10% Similarity=0.178 Sum_probs=100.9
Q ss_pred HhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCCCC
Q psy7938 36 FVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMSKD 115 (305)
Q Consensus 36 ~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~~~ 115 (305)
.+..|+|+||++|+++.|++.++++.. ..+.|+.||.+ |+|.
T Consensus 20 ~vl~f~a~w~~~C~~m~~vl~~l~~~~--------------------------~~~~F~~V~~d----------~~V~-- 61 (204)
T PTZ00062 20 LVLYVKSSKEPEYEQLMDVCNALVEDF--------------------------PSLEFYVVNLA----------DANN-- 61 (204)
T ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHC--------------------------CCcEEEEEccc----------cCcc--
Confidence 466799999999999999999994433 56999999976 9998
Q ss_pred CCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHHHcCcccccccCCCCCCccccCCcEEecccChhHHHhcCCCcEEE
Q psy7938 116 EVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFLAGNLKQHLLSQPLPEDWDKNAVKVLVASNFDEIAFDKSKHVLV 195 (305)
Q Consensus 116 ~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~~~~~~~~~~~s~~~p~~~~~~~v~~l~~~~f~~~v~~~~~~~lv 195 (305)
++||+++|+.|+.+.++. +.++.+|..++..+.... +.. . ..+-..+++ +..+++|
T Consensus 62 ~vPtfv~~~~g~~i~r~~----G~~~~~~~~~~~~~~~~~----------~~~-------~-~~~~v~~li--~~~~Vvv 117 (204)
T PTZ00062 62 EYGVFEFYQNSQLINSLE----GCNTSTLVSFIRGWAQKG----------SSE-------D-TVEKIERLI--RNHKILL 117 (204)
T ss_pred cceEEEEEECCEEEeeee----CCCHHHHHHHHHHHcCCC----------CHH-------H-HHHHHHHHH--hcCCEEE
Confidence 999999999998777773 567889999998875421 000 0 112233333 3455555
Q ss_pred EEE----CCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc------ccCCcccccEEEE
Q psy7938 196 EFY----APWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL------EHTKITSFPTLKL 250 (305)
Q Consensus 196 ~f~----~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~------~~~~i~~~Ptl~~ 250 (305)
+-- .|+|++|+++...|.+. ++.+..+|...+.. +.-+-..+|.+++
T Consensus 118 f~Kg~~~~p~C~~C~~~k~~L~~~--------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 118 FMKGSKTFPFCRFSNAVVNMLNSS--------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred EEccCCCCCCChhHHHHHHHHHHc--------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE
Confidence 444 27999999988888754 34455566665442 2235567888876
No 85
>PRK09381 trxA thioredoxin; Provisional
Probab=99.52 E-value=2.9e-15 Score=112.72 Aligned_cols=105 Identities=14% Similarity=0.193 Sum_probs=82.7
Q ss_pred cCceecCCCCCCCC-hhHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEE
Q psy7938 16 EDMAKYKPATPEIN-VDTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFV 94 (305)
Q Consensus 16 ~~~~~~~~~~~~~~-~~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 94 (305)
+.+.++++++++.. .+....+++.||++||++|+.+.|.+.++ +.++.+++.|+
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l-------------------------~~~~~~~~~~~ 57 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEI-------------------------ADEYQGKLTVA 57 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHH-------------------------HHHhCCCcEEE
Confidence 45566655555532 33456799999999999999999888888 34455779999
Q ss_pred EEeCCchhHHHHHHHcCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHHH
Q psy7938 95 TINTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFL 152 (305)
Q Consensus 95 ~vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~~ 152 (305)
.+|++ ....++++|+|. ++||+++|+.|.....+ .|..+.++|..++...+
T Consensus 58 ~vd~~--~~~~~~~~~~v~--~~Pt~~~~~~G~~~~~~---~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 58 KLNID--QNPGTAPKYGIR--GIPTLLLFKNGEVAATK---VGALSKGQLKEFLDANL 108 (109)
T ss_pred EEECC--CChhHHHhCCCC--cCCEEEEEeCCeEEEEe---cCCCCHHHHHHHHHHhc
Confidence 99999 778899999998 99999999877654444 36778899999998764
No 86
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.52 E-value=1.4e-15 Score=114.42 Aligned_cols=101 Identities=18% Similarity=0.180 Sum_probs=73.4
Q ss_pred CceecCCCCCCCCh---hHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCc-eEE
Q psy7938 17 DMAKYKPATPEINV---DTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNL-KVL 92 (305)
Q Consensus 17 ~~~~~~~~~~~~~~---~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 92 (305)
++.++++++++..+ ++.+++++.||++||+||+++.|.|.+++. .+++ .+.
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~-------------------------~~~~~~~~ 56 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAE-------------------------KLAGSNVK 56 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHH-------------------------HhccCCeE
Confidence 34555555555332 234689999999999999999988877633 2334 489
Q ss_pred EEEEeCCchhHHHHHH-HcCCCCCCCCeEEEEecCc-CceeccCCCC-CCCHHHHHHHH
Q psy7938 93 FVTINTDEEDHQKILE-FFGMSKDEVPSLRLIRLEE-DMAKYKPATP-EISVDTVRSFV 148 (305)
Q Consensus 93 ~~~vd~~~~~~~~l~~-~~~I~~~~~Ptl~~~~~~~-~~~~~~~~~~-~~~~~~l~~fv 148 (305)
++.|||+.. ...+|. .++|+ ++||+++|+.+. ....|. | .++.++|.+|+
T Consensus 57 ~~~vd~d~~-~~~~~~~~~~v~--~~Pti~~f~~~~~~~~~y~---g~~~~~~~l~~f~ 109 (109)
T cd02993 57 VAKFNADGE-QREFAKEELQLK--SFPTILFFPKNSRQPIKYP---SEQRDVDSLLMFV 109 (109)
T ss_pred EEEEECCcc-chhhHHhhcCCC--cCCEEEEEcCCCCCceecc---CCCCCHHHHHhhC
Confidence 999999931 467786 59998 999999998765 334553 4 48999998885
No 87
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.52 E-value=7.8e-14 Score=105.45 Aligned_cols=87 Identities=16% Similarity=0.215 Sum_probs=74.5
Q ss_pred cCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEEEeCCCce-EEeeeCC
Q psy7938 188 DKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLYAKDDNR-VIDYNGE 264 (305)
Q Consensus 188 ~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f~~g~~~-~~~~~g~ 264 (305)
..+..++|.||++||++|+.+.|.+++++..+ +.+.+..+|.+.+.. ..|+|.++||+++|++|++. .+++.|.
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~---~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~ 96 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS---DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGL 96 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc---CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEec
Confidence 34667899999999999999999999999886 368899999887765 89999999999999987553 4589999
Q ss_pred CCHHHHHHHHHhc
Q psy7938 265 RVLEALSNFVESG 277 (305)
Q Consensus 265 ~~~~~l~~fi~~~ 277 (305)
.+..++.+||..-
T Consensus 97 ~~~~el~~~i~~i 109 (113)
T cd02975 97 PAGYEFASLIEDI 109 (113)
T ss_pred CchHHHHHHHHHH
Confidence 8999999998763
No 88
>PRK10996 thioredoxin 2; Provisional
Probab=99.51 E-value=2.2e-15 Score=118.18 Aligned_cols=104 Identities=13% Similarity=0.180 Sum_probs=79.5
Q ss_pred cCceecCCCCCCCChhHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEE
Q psy7938 16 EDMAKYKPATPEINVDTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVT 95 (305)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 95 (305)
..++..+..+++...++.+.+++.||++||++|+.+.|.+.++ ..++.+.+.|++
T Consensus 35 ~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l-------------------------~~~~~~~v~~~~ 89 (139)
T PRK10996 35 GEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDV-------------------------AAERSGKVRFVK 89 (139)
T ss_pred CCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHH-------------------------HHHhCCCeEEEE
Confidence 3344444333443334456678899999999999998877776 233446799999
Q ss_pred EeCCchhHHHHHHHcCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHH
Q psy7938 96 INTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEF 151 (305)
Q Consensus 96 vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~ 151 (305)
||++ ++..++++|+|. ++||+++|+.|+....+ .|..+.+.|.+|+.+.
T Consensus 90 vd~~--~~~~l~~~~~V~--~~Ptlii~~~G~~v~~~---~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 90 VNTE--AERELSARFRIR--SIPTIMIFKNGQVVDML---NGAVPKAPFDSWLNEA 138 (139)
T ss_pred EeCC--CCHHHHHhcCCC--ccCEEEEEECCEEEEEE---cCCCCHHHHHHHHHHh
Confidence 9999 889999999998 99999999987665555 3678889999999875
No 89
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.51 E-value=2.1e-13 Score=98.48 Aligned_cols=90 Identities=33% Similarity=0.672 Sum_probs=77.0
Q ss_pred ChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEEEeCCCceE
Q psy7938 181 NFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLYAKDDNRV 258 (305)
Q Consensus 181 ~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f~~g~~~~ 258 (305)
+|.+.+.. +++++|.||++||++|+.+.+.+++++.. .+++.++.+|++.+.. ..+++.++|++++|++|+. .
T Consensus 2 ~~~~~~~~-~~~~ll~~~~~~C~~C~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~-~ 76 (93)
T cd02947 2 EFEELIKS-AKPVVVDFWAPWCGPCKAIAPVLEELAEE---YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKE-V 76 (93)
T ss_pred chHHHHhc-CCcEEEEEECCCChhHHHhhHHHHHHHHH---CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEE-E
Confidence 56666643 48999999999999999999999999988 3579999999987554 8999999999999998864 7
Q ss_pred EeeeCCCCHHHHHHHHH
Q psy7938 259 IDYNGERVLEALSNFVE 275 (305)
Q Consensus 259 ~~~~g~~~~~~l~~fi~ 275 (305)
..+.|..+.+.|.+||+
T Consensus 77 ~~~~g~~~~~~l~~~i~ 93 (93)
T cd02947 77 DRVVGADPKEELEEFLE 93 (93)
T ss_pred EEEecCCCHHHHHHHhC
Confidence 88899888899998873
No 90
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.50 E-value=3.5e-15 Score=111.08 Aligned_cols=101 Identities=13% Similarity=0.216 Sum_probs=75.4
Q ss_pred ecCCCCCCCChhHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCC
Q psy7938 20 KYKPATPEINVDTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTD 99 (305)
Q Consensus 20 ~~~~~~~~~~~~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~ 99 (305)
+++.++++...+..+.+++.||++||++|+.+.|.+..+...+ .. .+.+.++.+||+
T Consensus 4 ~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~----------------------~~-~~~~~~~~id~~ 60 (104)
T cd02997 4 HLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATEL----------------------KE-DGKGVLAAVDCT 60 (104)
T ss_pred EechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHH----------------------hh-CCceEEEEEECC
Confidence 3433344444445568899999999999999988877663322 11 256889999999
Q ss_pred chhHHHHHHHcCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHH
Q psy7938 100 EEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFV 148 (305)
Q Consensus 100 ~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv 148 (305)
..++..++.++||. ++||+++|+.|+....| .|..+.+.+.+|+
T Consensus 61 ~~~~~~~~~~~~i~--~~Pt~~~~~~g~~~~~~---~g~~~~~~l~~~l 104 (104)
T cd02997 61 KPEHDALKEEYNVK--GFPTFKYFENGKFVEKY---EGERTAEDIIEFM 104 (104)
T ss_pred CCccHHHHHhCCCc--cccEEEEEeCCCeeEEe---CCCCCHHHHHhhC
Confidence 44489999999998 99999999988655555 3678888888774
No 91
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.49 E-value=1.2e-14 Score=112.81 Aligned_cols=96 Identities=6% Similarity=-0.023 Sum_probs=75.4
Q ss_pred HHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcC
Q psy7938 32 TVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFG 111 (305)
Q Consensus 32 ~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~ 111 (305)
+.+.++++|||+||+||+.+.|.++++ ++++++.+.|++||+| ++++++++|+
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~l-------------------------a~~~~~~~~~~kVDVD--e~~dla~~y~ 74 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASV-------------------------AETIKNFAVIYLVDIT--EVPDFNTMYE 74 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHH-------------------------HHHcCCceEEEEEECC--CCHHHHHHcC
Confidence 345788999999999999999999998 4444577899999999 9999999999
Q ss_pred CCCCCCCeEE-EEecCc-CceeccCCC-----CCCCHHHHHHHHHHHHcCcc
Q psy7938 112 MSKDEVPSLR-LIRLEE-DMAKYKPAT-----PEISVDTVRSFVTEFLAGNL 156 (305)
Q Consensus 112 I~~~~~Ptl~-~~~~~~-~~~~~~~~~-----~~~~~~~l~~fv~~~~~~~~ 156 (305)
|. +.|+++ +|+.|+ .+.+..+.+ ...+.++|++-++..+.|..
T Consensus 75 I~--~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~ 124 (142)
T PLN00410 75 LY--DPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGAR 124 (142)
T ss_pred cc--CCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHh
Confidence 97 676666 888886 444443210 14678899999998877643
No 92
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.47 E-value=1.4e-14 Score=107.75 Aligned_cols=86 Identities=21% Similarity=0.143 Sum_probs=66.6
Q ss_pred HHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCch-hHHHHHHHcC
Q psy7938 33 VRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEE-DHQKILEFFG 111 (305)
Q Consensus 33 ~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-~~~~l~~~~~ 111 (305)
.+.+|++|||+||++|+.+.|.+.++ +.++ +.+.|+.||++.. +...++++|+
T Consensus 15 ~k~vvv~F~a~wC~~C~~~~p~l~~l-------------------------a~~~-~~v~~~~vd~d~~~~~~~l~~~~~ 68 (103)
T cd02985 15 GRLVVLEFALKHSGPSVKIYPTMVKL-------------------------SRTC-NDVVFLLVNGDENDSTMELCRREK 68 (103)
T ss_pred CCEEEEEEECCCCHhHHHHhHHHHHH-------------------------HHHC-CCCEEEEEECCCChHHHHHHHHcC
Confidence 46789999999999999999888877 3333 5688999999832 2248999999
Q ss_pred CCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHH
Q psy7938 112 MSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTE 150 (305)
Q Consensus 112 I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~ 150 (305)
|+ ++||+++|+.|+.+.++. | ...++|++-+..
T Consensus 69 V~--~~Pt~~~~~~G~~v~~~~---G-~~~~~l~~~~~~ 101 (103)
T cd02985 69 II--EVPHFLFYKDGEKIHEEE---G-IGPDELIGDVLY 101 (103)
T ss_pred CC--cCCEEEEEeCCeEEEEEe---C-CCHHHHHHHHHh
Confidence 98 999999999887666663 3 456677766543
No 93
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.47 E-value=3.6e-13 Score=103.84 Aligned_cols=90 Identities=17% Similarity=0.262 Sum_probs=74.1
Q ss_pred hcCC-CcEEEEEECCCChhhhhHHHHHH---HHHHHhCCCCceEEEEEeCCcc--------------cc-ccCCcccccE
Q psy7938 187 FDKS-KHVLVEFYAPWCGHCKQLAPIYD---KLGEKFADRDDITIAKIDATVN--------------EL-EHTKITSFPT 247 (305)
Q Consensus 187 ~~~~-~~~lv~f~~~~C~~C~~~~~~~~---~la~~~~~~~~v~~~~id~~~~--------------~~-~~~~i~~~Pt 247 (305)
...+ ++++|.||++||++|+.+.+.+. .+...+. .++.++.+|.+.+ .. ..++|.++||
T Consensus 10 ~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~--~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt 87 (125)
T cd02951 10 AADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR--AHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPT 87 (125)
T ss_pred HHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH--hheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccE
Confidence 3567 99999999999999999999885 5666664 3688888988754 22 7899999999
Q ss_pred EEEEeCC-CceEEeeeCCCCHHHHHHHHHhcC
Q psy7938 248 LKLYAKD-DNRVIDYNGERVLEALSNFVESGG 278 (305)
Q Consensus 248 l~~f~~g-~~~~~~~~g~~~~~~l~~fi~~~~ 278 (305)
+++|+++ ++...++.|..+.+.+.++|+...
T Consensus 88 ~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~ 119 (125)
T cd02951 88 VIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQ 119 (125)
T ss_pred EEEEcCCCCceeEEecCCCCHHHHHHHHHHHH
Confidence 9999987 666888999999899988887643
No 94
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.47 E-value=4.8e-13 Score=102.34 Aligned_cols=96 Identities=17% Similarity=0.180 Sum_probs=74.0
Q ss_pred cEEecccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc------------c-cc-
Q psy7938 174 VKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE------------L-EH- 239 (305)
Q Consensus 174 v~~l~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~------------~-~~- 239 (305)
+..++..+|.+.+ .+++.++|+|+++||++|+.+.|.+.++++.. ++.+..+|.+.+. . ..
T Consensus 8 ~~~it~~~~~~~i-~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~----~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~ 82 (122)
T TIGR01295 8 LEVTTVVRALEAL-DKKETATFFIGRKTCPYCRKFSGTLSGVVAQT----KAPIYYIDSENNGSFEMSSLNDLTAFRSRF 82 (122)
T ss_pred ceecCHHHHHHHH-HcCCcEEEEEECCCChhHHHHhHHHHHHHHhc----CCcEEEEECCCccCcCcccHHHHHHHHHHc
Confidence 5667778888877 45778999999999999999999999999984 2345555555321 0 23
Q ss_pred ---CCcccccEEEEEeCCCceEEeeeC-CCCHHHHHHHHH
Q psy7938 240 ---TKITSFPTLKLYAKDDNRVIDYNG-ERVLEALSNFVE 275 (305)
Q Consensus 240 ---~~i~~~Ptl~~f~~g~~~~~~~~g-~~~~~~l~~fi~ 275 (305)
.+|.++||+++|++|+. +.+..| ..+.+.|.+|+.
T Consensus 83 ~i~~~i~~~PT~v~~k~Gk~-v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 83 GIPTSFMGTPTFVHITDGKQ-VSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCcccCCCCCEEEEEeCCeE-EEEEeCCCCCHHHHHHHhh
Confidence 45667999999999976 677778 567999999874
No 95
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.47 E-value=1e-14 Score=110.46 Aligned_cols=87 Identities=16% Similarity=0.219 Sum_probs=66.9
Q ss_pred CceecCCCCCCCCh-hHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEE
Q psy7938 17 DMAKYKPATPEINV-DTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVT 95 (305)
Q Consensus 17 ~~~~~~~~~~~~~~-~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 95 (305)
.+++++.++|+..+ .+...+++.||++||++|+.+.|.|.+++..+ ..+.+.+.|+.
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~----------------------~~~~~~v~~~~ 59 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDL----------------------RKWRPVVRVAA 59 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHH----------------------HhcCCceEEEE
Confidence 34556555555443 22368999999999999999998887774443 23346799999
Q ss_pred EeCCchhHHHHHHHcCCCCCCCCeEEEEecCc
Q psy7938 96 INTDEEDHQKILEFFGMSKDEVPSLRLIRLEE 127 (305)
Q Consensus 96 vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~ 127 (305)
+||+...+..+|++|+|+ ++||+++|+.+.
T Consensus 60 vd~~~~~~~~~~~~~~i~--~~Pt~~lf~~~~ 89 (114)
T cd02992 60 VDCADEENVALCRDFGVT--GYPTLRYFPPFS 89 (114)
T ss_pred EeccchhhHHHHHhCCCC--CCCEEEEECCCC
Confidence 999865678999999998 999999999875
No 96
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.47 E-value=1.7e-14 Score=107.54 Aligned_cols=89 Identities=15% Similarity=0.241 Sum_probs=71.3
Q ss_pred HHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCC
Q psy7938 33 VRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGM 112 (305)
Q Consensus 33 ~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I 112 (305)
...+++.|||+||++|+.+.|.+.+++..+ ......+.++.+||+ ++..++++++|
T Consensus 15 ~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~----------------------~~~~~~~~~~~vd~~--~~~~~~~~~~I 70 (104)
T cd03000 15 EDIWLVDFYAPWCGHCKKLEPVWNEVGAEL----------------------KSSGSPVRVGKLDAT--AYSSIASEFGV 70 (104)
T ss_pred CCeEEEEEECCCCHHHHhhChHHHHHHHHH----------------------HhcCCcEEEEEEECc--cCHhHHhhcCC
Confidence 468899999999999999999888774333 111245899999999 77899999999
Q ss_pred CCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHH
Q psy7938 113 SKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEF 151 (305)
Q Consensus 113 ~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~ 151 (305)
. ++||+++|+.+ ....+ .|..+.++|.+|+.+.
T Consensus 71 ~--~~Pt~~l~~~~-~~~~~---~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 71 R--GYPTIKLLKGD-LAYNY---RGPRTKDDIVEFANRV 103 (104)
T ss_pred c--cccEEEEEcCC-Cceee---cCCCCHHHHHHHHHhh
Confidence 8 99999999755 33444 3678999999999875
No 97
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.46 E-value=1.6e-14 Score=107.03 Aligned_cols=92 Identities=18% Similarity=0.353 Sum_probs=73.5
Q ss_pred hhHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHH
Q psy7938 30 VDTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEF 109 (305)
Q Consensus 30 ~~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~ 109 (305)
+.....+++.||++||++|+.+.|.+..++..+ +..+.+.++.+||+ ++..++++
T Consensus 10 ~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~d~~--~~~~~~~~ 64 (102)
T TIGR01126 10 VLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKEL-----------------------KGDPDIVLAKVDAT--AEKDLASR 64 (102)
T ss_pred hccCCcEEEEEECCCCHHHHhhChHHHHHHHHh-----------------------ccCCceEEEEEEcc--chHHHHHh
Confidence 345567888999999999999888777663332 11126999999999 88999999
Q ss_pred cCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHH
Q psy7938 110 FGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEF 151 (305)
Q Consensus 110 ~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~ 151 (305)
|+|. ++|++.+|+.++....| .|..+.++|..|+.++
T Consensus 65 ~~i~--~~P~~~~~~~~~~~~~~---~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 65 FGVS--GFPTIKFFPKGKKPVDY---EGGRDLEAIVEFVNEK 101 (102)
T ss_pred CCCC--cCCEEEEecCCCcceee---cCCCCHHHHHHHHHhc
Confidence 9998 99999999988654555 3678899999999874
No 98
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.46 E-value=2.1e-14 Score=106.50 Aligned_cols=93 Identities=14% Similarity=0.029 Sum_probs=73.1
Q ss_pred cCCCCCCCChhHHHHHhhhhhcCc--ccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeC
Q psy7938 21 YKPATPEINVDTVRSFVTEFLAGN--LKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINT 98 (305)
Q Consensus 21 ~~~~~~~~~~~~~~~~iv~f~a~w--c~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~ 98 (305)
++..+++...+.....++.||++| |++|+.+.|.++++ ++++.+++.|++||+
T Consensus 15 ~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leel-------------------------a~e~~~~v~f~kVdi 69 (111)
T cd02965 15 VDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPEL-------------------------LKAFPGRFRAAVVGR 69 (111)
T ss_pred cccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHH-------------------------HHHCCCcEEEEEEEC
Confidence 333444433344456678899997 99999999999999 556668899999999
Q ss_pred CchhHHHHHHHcCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHH
Q psy7938 99 DEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVR 145 (305)
Q Consensus 99 ~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~ 145 (305)
+ +++.++.+|+|+ ++||+++|+.|+.+..+. |..+.+++.
T Consensus 70 d--~~~~la~~f~V~--sIPTli~fkdGk~v~~~~---G~~~~~e~~ 109 (111)
T cd02965 70 A--DEQALAARFGVL--RTPALLFFRDGRYVGVLA---GIRDWDEYV 109 (111)
T ss_pred C--CCHHHHHHcCCC--cCCEEEEEECCEEEEEEe---CccCHHHHh
Confidence 9 788999999998 999999999997666663 566666553
No 99
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.45 E-value=2e-14 Score=107.03 Aligned_cols=99 Identities=19% Similarity=0.310 Sum_probs=73.7
Q ss_pred ecCCCCCCCChh-HHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeC
Q psy7938 20 KYKPATPEINVD-TVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINT 98 (305)
Q Consensus 20 ~~~~~~~~~~~~-~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~ 98 (305)
.+++++++..+. +.+.+++.||++||++|+.+.|.+..++..++ ..+.+.++.+||
T Consensus 4 ~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~-----------------------~~~~~~~~~id~ 60 (105)
T cd02998 4 ELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFA-----------------------NEDDVVIAKVDA 60 (105)
T ss_pred EcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhC-----------------------CCCCEEEEEEEC
Confidence 344444443332 23478999999999999999888888743331 125699999999
Q ss_pred Cchh-HHHHHHHcCCCCCCCCeEEEEecCc-CceeccCCCCCCCHHHHHHHH
Q psy7938 99 DEED-HQKILEFFGMSKDEVPSLRLIRLEE-DMAKYKPATPEISVDTVRSFV 148 (305)
Q Consensus 99 ~~~~-~~~l~~~~~I~~~~~Ptl~~~~~~~-~~~~~~~~~~~~~~~~l~~fv 148 (305)
+ . +..+|++|+|. ++|++++|+.+. ....| .|.++.++|.+|+
T Consensus 61 ~--~~~~~~~~~~~i~--~~P~~~~~~~~~~~~~~~---~g~~~~~~l~~~i 105 (105)
T cd02998 61 D--EANKDLAKKYGVS--GFPTLKFFPKGSTEPVKY---EGGRDLEDLVKFV 105 (105)
T ss_pred C--CcchhhHHhCCCC--CcCEEEEEeCCCCCcccc---CCccCHHHHHhhC
Confidence 9 6 78999999998 999999999774 32333 3678899998875
No 100
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.45 E-value=3e-14 Score=112.14 Aligned_cols=97 Identities=12% Similarity=0.120 Sum_probs=76.2
Q ss_pred ChhHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHH
Q psy7938 29 NVDTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILE 108 (305)
Q Consensus 29 ~~~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~ 108 (305)
...+.+++|+.|||+||++|+.+.|.+.++ ...+.+.+.|+.||.+......+++
T Consensus 16 a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l-------------------------~~~~~~~~~~v~v~vd~~~~~~~~~ 70 (142)
T cd02950 16 ALSNGKPTLVEFYADWCTVCQEMAPDVAKL-------------------------KQKYGDQVNFVMLNVDNPKWLPEID 70 (142)
T ss_pred HHhCCCEEEEEEECCcCHHHHHhHHHHHHH-------------------------HHHhccCeeEEEEEcCCcccHHHHH
Confidence 334567899999999999999999888877 3344456788888887545568999
Q ss_pred HcCCCCCCCCeEEEEe-cCcCceeccCCCCCCCHHHHHHHHHHHHcCc
Q psy7938 109 FFGMSKDEVPSLRLIR-LEEDMAKYKPATPEISVDTVRSFVTEFLAGN 155 (305)
Q Consensus 109 ~~~I~~~~~Ptl~~~~-~~~~~~~~~~~~~~~~~~~l~~fv~~~~~~~ 155 (305)
+|+|. ++||+++|+ .|....++ .|..+.++|.+++...+.+.
T Consensus 71 ~~~V~--~iPt~v~~~~~G~~v~~~---~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 71 RYRVD--GIPHFVFLDREGNEEGQS---IGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred HcCCC--CCCEEEEECCCCCEEEEE---eCCCCHHHHHHHHHHHHcCC
Confidence 99998 999999996 45444455 36778899999999998764
No 101
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.44 E-value=1.2e-14 Score=110.07 Aligned_cols=84 Identities=14% Similarity=0.254 Sum_probs=65.6
Q ss_pred HHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCC
Q psy7938 34 RSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMS 113 (305)
Q Consensus 34 ~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~ 113 (305)
..+++.||+|||++|+.+.|.+.+++ .++ ..+.|++||++ ++ .++++|+|.
T Consensus 25 ~~vvv~F~a~~c~~C~~l~~~l~~la-------------------------~~~-~~v~f~~vd~~--~~-~l~~~~~i~ 75 (113)
T cd02957 25 TRVVVHFYEPGFPRCKILDSHLEELA-------------------------AKY-PETKFVKINAE--KA-FLVNYLDIK 75 (113)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHH-------------------------HHC-CCcEEEEEEch--hh-HHHHhcCCC
Confidence 67889999999999999999888883 333 34889999999 66 999999998
Q ss_pred CCCCCeEEEEecCcCceeccCC----CCCCCHHHHHHHH
Q psy7938 114 KDEVPSLRLIRLEEDMAKYKPA----TPEISVDTVRSFV 148 (305)
Q Consensus 114 ~~~~Ptl~~~~~~~~~~~~~~~----~~~~~~~~l~~fv 148 (305)
++||+++|+.|+.+.++.+. ....+.+.|.+++
T Consensus 76 --~~Pt~~~f~~G~~v~~~~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 76 --VLPTLLVYKNGELIDNIVGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred --cCCEEEEEECCEEEEEEecHHHhCCCCCCHHHHHHHh
Confidence 99999999999776666431 1234555565553
No 102
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.44 E-value=1.3e-14 Score=107.86 Aligned_cols=86 Identities=14% Similarity=0.074 Sum_probs=66.9
Q ss_pred hHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCc-eEEEEEEeCCchhHHHHHHH
Q psy7938 31 DTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNL-KVLFVTINTDEEDHQKILEF 109 (305)
Q Consensus 31 ~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~~~l~~~ 109 (305)
++..++++.|||+||++|+.+.|.+..+. .++++ .+.|+.+|++ . .+++++
T Consensus 15 ~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~-------------------------~~~~~~~~~~~~vd~d--~-~~~~~~ 66 (102)
T cd02948 15 SNKGLTVVDVYQEWCGPCKAVVSLFKKIK-------------------------NELGDDLLHFATAEAD--T-IDTLKR 66 (102)
T ss_pred ccCCeEEEEEECCcCHhHHHHhHHHHHHH-------------------------HHcCCCcEEEEEEeCC--C-HHHHHH
Confidence 34567888999999999999988887762 33333 4789999998 3 578999
Q ss_pred cCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHH
Q psy7938 110 FGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTE 150 (305)
Q Consensus 110 ~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~ 150 (305)
|+|+ ++||+++|+.|+.+.+.. | .+.+.+.+++.+
T Consensus 67 ~~v~--~~Pt~~~~~~g~~~~~~~---G-~~~~~~~~~i~~ 101 (102)
T cd02948 67 YRGK--CEPTFLFYKNGELVAVIR---G-ANAPLLNKTITE 101 (102)
T ss_pred cCCC--cCcEEEEEECCEEEEEEe---c-CChHHHHHHHhh
Confidence 9998 999999999886655553 3 477888888764
No 103
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.44 E-value=2.6e-14 Score=106.30 Aligned_cols=100 Identities=15% Similarity=0.234 Sum_probs=74.3
Q ss_pred ceecCCCCCCCChh-HHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEE
Q psy7938 18 MAKYKPATPEINVD-TVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTI 96 (305)
Q Consensus 18 ~~~~~~~~~~~~~~-~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v 96 (305)
+..+++++|+..+. +...+++.||++||++|+.+.|.+.+++..++. ...+.|+++
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-----------------------~~~~~~~~i 58 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKG-----------------------DDNVVIAKM 58 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcC-----------------------CCCEEEEEE
Confidence 34555556654432 236789999999999999999888877443311 136999999
Q ss_pred eCCchhHHHHHHHcCCCCCCCCeEEEEecCc--CceeccCCCCCCCHHHHHHHH
Q psy7938 97 NTDEEDHQKILEFFGMSKDEVPSLRLIRLEE--DMAKYKPATPEISVDTVRSFV 148 (305)
Q Consensus 97 d~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~--~~~~~~~~~~~~~~~~l~~fv 148 (305)
||+ ++ +++..+++. ++||+++|..|. ....| .|..+.++|.+||
T Consensus 59 d~~--~~-~~~~~~~~~--~~Pt~~~~~~~~~~~~~~~---~g~~~~~~l~~fi 104 (104)
T cd02995 59 DAT--AN-DVPSEFVVD--GFPTILFFPAGDKSNPIKY---EGDRTLEDLIKFI 104 (104)
T ss_pred eCc--ch-hhhhhccCC--CCCEEEEEcCCCcCCceEc---cCCcCHHHHHhhC
Confidence 999 55 578899997 999999999886 33444 3778989998875
No 104
>KOG0908|consensus
Probab=99.43 E-value=4.4e-14 Score=116.31 Aligned_cols=93 Identities=12% Similarity=0.185 Sum_probs=78.9
Q ss_pred CChhHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHH
Q psy7938 28 INVDTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKIL 107 (305)
Q Consensus 28 ~~~~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~ 107 (305)
+...+.+.++|+|+|.|||||++++|+|+.+ +-+|. +..|++||+| +-+..+
T Consensus 16 ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~l-------------------------ankYp-~aVFlkVdVd--~c~~ta 67 (288)
T KOG0908|consen 16 LSAAGGKLVVVDFTASWCGPCKRIAPIFSDL-------------------------ANKYP-GAVFLKVDVD--ECRGTA 67 (288)
T ss_pred hhccCceEEEEEEEecccchHHhhhhHHHHh-------------------------hhhCc-ccEEEEEeHH--Hhhchh
Confidence 4456678889999999999999999999999 44443 4669999999 778899
Q ss_pred HHcCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHHHcC
Q psy7938 108 EFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFLAG 154 (305)
Q Consensus 108 ~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~~~~ 154 (305)
..+||+ ..||+++|.+|.++..+. ..++..|++.+..+...
T Consensus 68 a~~gV~--amPTFiff~ng~kid~~q----GAd~~gLe~kv~~~~st 108 (288)
T KOG0908|consen 68 ATNGVN--AMPTFIFFRNGVKIDQIQ----GADASGLEEKVAKYAST 108 (288)
T ss_pred hhcCcc--cCceEEEEecCeEeeeec----CCCHHHHHHHHHHHhcc
Confidence 999998 999999999998877774 56788899999998754
No 105
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.43 E-value=3.2e-14 Score=130.94 Aligned_cols=106 Identities=14% Similarity=0.172 Sum_probs=79.7
Q ss_pred cCceecCCCCCCCChh---HHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCc-eE
Q psy7938 16 EDMAKYKPATPEINVD---TVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNL-KV 91 (305)
Q Consensus 16 ~~~~~~~~~~~~~~~~---~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 91 (305)
.++++++.++|+..++ ..+.+|++||||||++|+.+.|.|.+++.. +++ .+
T Consensus 351 ~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~-------------------------~~~~~v 405 (463)
T TIGR00424 351 NNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEK-------------------------LAGSGV 405 (463)
T ss_pred CCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHH-------------------------hccCCc
Confidence 4677777666665443 556789999999999999999999888333 334 38
Q ss_pred EEEEEeCCchhHHHHHHHcCCCCCCCCeEEEEecCcC-ceeccCCCCCCCHHHHHHHHHH
Q psy7938 92 LFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEED-MAKYKPATPEISVDTVRSFVTE 150 (305)
Q Consensus 92 ~~~~vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~-~~~~~~~~~~~~~~~l~~fv~~ 150 (305)
.|++||||.......+++|+|. ++||+++|+.|.. ..+|. .|.++.++|..|+..
T Consensus 406 ~~~kVdvD~~~~~~~~~~~~I~--~~PTii~Fk~g~~~~~~Y~--~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 406 KVAKFRADGDQKEFAKQELQLG--SFPTILFFPKHSSRPIKYP--SEKRDVDSLMSFVNL 461 (463)
T ss_pred EEEEEECCCCccHHHHHHcCCC--ccceEEEEECCCCCceeCC--CCCCCHHHHHHHHHh
Confidence 8999999943333334789998 9999999998853 34453 357999999999875
No 106
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.42 E-value=2.1e-14 Score=113.58 Aligned_cols=90 Identities=18% Similarity=0.266 Sum_probs=69.5
Q ss_pred cCceecCCCCCCCChhH--HHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcC-ceEE
Q psy7938 16 EDMAKYKPATPEINVDT--VRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGN-LKVL 92 (305)
Q Consensus 16 ~~~~~~~~~~~~~~~~~--~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~ 92 (305)
..+..+++++|+..+.. ...+++.|||+||++|+.+.|.+.+++..+ . ..+.
T Consensus 28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~-------------------------~~~~v~ 82 (152)
T cd02962 28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKY-------------------------NNNNLK 82 (152)
T ss_pred CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHc-------------------------ccCCeE
Confidence 45666655555543322 346899999999999999999998883333 3 3599
Q ss_pred EEEEeCCchhHHHHHHHcCCCCCC------CCeEEEEecCcCceeccC
Q psy7938 93 FVTINTDEEDHQKILEFFGMSKDE------VPSLRLIRLEEDMAKYKP 134 (305)
Q Consensus 93 ~~~vd~~~~~~~~l~~~~~I~~~~------~Ptl~~~~~~~~~~~~~~ 134 (305)
|++||++ ++++++++|+|. + +||+++|+.|+.+.++.+
T Consensus 83 f~~VDvd--~~~~la~~~~V~--~~~~v~~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 83 FGKIDIG--RFPNVAEKFRVS--TSPLSKQLPTIILFQGGKEVARRPY 126 (152)
T ss_pred EEEEECC--CCHHHHHHcCce--ecCCcCCCCEEEEEECCEEEEEEec
Confidence 9999999 889999999997 5 999999999887666643
No 107
>PTZ00062 glutaredoxin; Provisional
Probab=99.42 E-value=1.5e-12 Score=107.75 Aligned_cols=92 Identities=12% Similarity=0.222 Sum_probs=79.1
Q ss_pred ccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccccccCCcccccEEEEEeCCCceE
Q psy7938 179 ASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKLYAKDDNRV 258 (305)
Q Consensus 179 ~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~~~~~i~~~Ptl~~f~~g~~~~ 258 (305)
.++|.+.+..+.+.++++|+|+||++|+.+.+.+.++++.+ +.+.|++||++ ++|.++||+++|++|+. +
T Consensus 6 ~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~---~~~~F~~V~~d------~~V~~vPtfv~~~~g~~-i 75 (204)
T PTZ00062 6 KEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDF---PSLEFYVVNLA------DANNEYGVFEFYQNSQL-I 75 (204)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHC---CCcEEEEEccc------cCcccceEEEEEECCEE-E
Confidence 46777777544578999999999999999999999999998 46999999987 99999999999998866 8
Q ss_pred EeeeCCCCHHHHHHHHHhcCCCC
Q psy7938 259 IDYNGERVLEALSNFVESGGKEG 281 (305)
Q Consensus 259 ~~~~g~~~~~~l~~fi~~~~~~~ 281 (305)
.++.|. +...|.+++.++...+
T Consensus 76 ~r~~G~-~~~~~~~~~~~~~~~~ 97 (204)
T PTZ00062 76 NSLEGC-NTSTLVSFIRGWAQKG 97 (204)
T ss_pred eeeeCC-CHHHHHHHHHHHcCCC
Confidence 889987 4788999998887643
No 108
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.41 E-value=2.7e-14 Score=107.93 Aligned_cols=88 Identities=14% Similarity=0.226 Sum_probs=70.2
Q ss_pred hHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHc
Q psy7938 31 DTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFF 110 (305)
Q Consensus 31 ~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~ 110 (305)
.+...+++.||++||++|+.+.|.+.+++ .++ ..+.|++||++ ++..++++|
T Consensus 20 ~~~~~vvV~f~a~~c~~C~~~~p~l~~la-------------------------~~~-~~i~f~~Vd~~--~~~~l~~~~ 71 (113)
T cd02989 20 KSSERVVCHFYHPEFFRCKIMDKHLEILA-------------------------KKH-LETKFIKVNAE--KAPFLVEKL 71 (113)
T ss_pred hCCCcEEEEEECCCCccHHHHHHHHHHHH-------------------------HHc-CCCEEEEEEcc--cCHHHHHHC
Confidence 34467889999999999999999998883 333 34899999999 889999999
Q ss_pred CCCCCCCCeEEEEecCcCceeccCC-----CCCCCHHHHHHHH
Q psy7938 111 GMSKDEVPSLRLIRLEEDMAKYKPA-----TPEISVDTVRSFV 148 (305)
Q Consensus 111 ~I~~~~~Ptl~~~~~~~~~~~~~~~-----~~~~~~~~l~~fv 148 (305)
+|. ++||+++|+.|+.+.++.+. .+..+.+++..|+
T Consensus 72 ~v~--~vPt~l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 72 NIK--VLPTVILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred CCc--cCCEEEEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 998 99999999999766555321 1456777777765
No 109
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.41 E-value=1.1e-13 Score=102.49 Aligned_cols=93 Identities=9% Similarity=0.020 Sum_probs=70.0
Q ss_pred HHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcC
Q psy7938 32 TVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFG 111 (305)
Q Consensus 32 ~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~ 111 (305)
+.+.++++|+|+||+||+.++|++.+++ .++++.+.|++||.| +.++++++|+
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela-------------------------~~~~~~~~f~kVDVD--ev~dva~~y~ 65 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTS-------------------------HDLSKMASIYLVDVD--KVPVYTQYFD 65 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHH-------------------------HHccCceEEEEEecc--ccHHHHHhcC
Confidence 3577889999999999999999999994 444455999999999 9999999999
Q ss_pred CCCCCCCeEEEEecCcCceeccCC------CC-CCCHHHHHHHHHHHHc
Q psy7938 112 MSKDEVPSLRLIRLEEDMAKYKPA------TP-EISVDTVRSFVTEFLA 153 (305)
Q Consensus 112 I~~~~~Ptl~~~~~~~~~~~~~~~------~~-~~~~~~l~~fv~~~~~ 153 (305)
|. ..||+++|++|+...-=.+. ++ --+.+++++.++-...
T Consensus 66 I~--amPtfvffkngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~yr 112 (114)
T cd02986 66 IS--YIPSTIFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYR 112 (114)
T ss_pred ce--eCcEEEEEECCcEEEEecCCCCCcEEEEEcCchhHHHHHHHHHHc
Confidence 97 89999999988642111111 01 1345677777766543
No 110
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.38 E-value=2.6e-12 Score=97.13 Aligned_cols=92 Identities=17% Similarity=0.376 Sum_probs=70.2
Q ss_pred ccChhHHHhcC-CCcEEEEEEC-------CCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcc--------cc-ccCC
Q psy7938 179 ASNFDEIAFDK-SKHVLVEFYA-------PWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVN--------EL-EHTK 241 (305)
Q Consensus 179 ~~~f~~~v~~~-~~~~lv~f~~-------~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~--------~~-~~~~ 241 (305)
.++|.+.+.+. +++++|.||| +||++|+.+.|.+++++..++ .++.|++||++.+ +. ..++
T Consensus 9 ~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~--~~v~fv~Vdvd~~~~w~d~~~~~~~~~~ 86 (119)
T cd02952 9 YEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP--EDCVFIYCDVGDRPYWRDPNNPFRTDPK 86 (119)
T ss_pred HHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC--CCCEEEEEEcCCcccccCcchhhHhccC
Confidence 36777777543 5799999999 999999999999999999995 3688999998763 23 7889
Q ss_pred cc-cccEEEEEeCCCceEEeeeCCCCHHHHHHHH
Q psy7938 242 IT-SFPTLKLYAKDDNRVIDYNGERVLEALSNFV 274 (305)
Q Consensus 242 i~-~~Ptl~~f~~g~~~~~~~~g~~~~~~l~~fi 274 (305)
|. ++||+++|+.|++ .+. ..-.+...+..|+
T Consensus 87 I~~~iPT~~~~~~~~~-l~~-~~c~~~~~~~~~~ 118 (119)
T cd02952 87 LTTGVPTLLRWKTPQR-LVE-DECLQADLVEMFF 118 (119)
T ss_pred cccCCCEEEEEcCCce-ecc-hhhcCHHHHHHhh
Confidence 98 9999999987754 222 2233566666654
No 111
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.37 E-value=8.1e-14 Score=103.88 Aligned_cols=93 Identities=13% Similarity=0.140 Sum_probs=67.8
Q ss_pred ChhHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCch--hHHHH
Q psy7938 29 NVDTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEE--DHQKI 106 (305)
Q Consensus 29 ~~~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~--~~~~l 106 (305)
.+++.+++++.||++||++|+.+.|.+.+..... ..+++.+.++.||++.. ....+
T Consensus 7 ~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~----------------------~~~~~~~~~~~vd~~~~~~~~~~~ 64 (104)
T cd02953 7 ALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQ----------------------AALKKDVVLLRADWTKNDPEITAL 64 (104)
T ss_pred HHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHH----------------------HHHhCCeEEEEEecCCCCHHHHHH
Confidence 3455678899999999999998877664321111 22234799999998731 16789
Q ss_pred HHHcCCCCCCCCeEEEEec--CcCceeccCCCCCCCHHHHHHHH
Q psy7938 107 LEFFGMSKDEVPSLRLIRL--EEDMAKYKPATPEISVDTVRSFV 148 (305)
Q Consensus 107 ~~~~~I~~~~~Ptl~~~~~--~~~~~~~~~~~~~~~~~~l~~fv 148 (305)
+++|+|. ++||+++|+. |+...++ .|.++.++|.+++
T Consensus 65 ~~~~~i~--~~Pti~~~~~~~g~~~~~~---~G~~~~~~l~~~l 103 (104)
T cd02953 65 LKRFGVF--GPPTYLFYGPGGEPEPLRL---PGFLTADEFLEAL 103 (104)
T ss_pred HHHcCCC--CCCEEEEECCCCCCCCccc---ccccCHHHHHHHh
Confidence 9999998 9999999995 4433344 3778888888876
No 112
>KOG1731|consensus
Probab=99.36 E-value=9.3e-13 Score=120.50 Aligned_cols=106 Identities=25% Similarity=0.585 Sum_probs=86.5
Q ss_pred cCCcEEecccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCC-CCceEEEEEeCCccc----cccCCcccc
Q psy7938 171 KNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFAD-RDDITIAKIDATVNE----LEHTKITSF 245 (305)
Q Consensus 171 ~~~v~~l~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~-~~~v~~~~id~~~~~----~~~~~i~~~ 245 (305)
+.+|..|+.++|+..+..+.+..+|.||++|||+|+.++|.|+++|+.+.. .+-+.++.|||.... |++++|++|
T Consensus 38 ~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~ 117 (606)
T KOG1731|consen 38 DDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGY 117 (606)
T ss_pred CCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCC
Confidence 356999999999999988889999999999999999999999999999865 445788899998655 399999999
Q ss_pred cEEEEEeCCCce---EEeeeCCCCHHHHHHHHHh
Q psy7938 246 PTLKLYAKDDNR---VIDYNGERVLEALSNFVES 276 (305)
Q Consensus 246 Ptl~~f~~g~~~---~~~~~g~~~~~~l~~fi~~ 276 (305)
|++.+|+.+... -..+.|.....++..++.+
T Consensus 118 Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~ 151 (606)
T KOG1731|consen 118 PTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIR 151 (606)
T ss_pred ceeeecCCccccCcCCCcccCCcchhhHHHHHHH
Confidence 999999988442 2334555555556555554
No 113
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.36 E-value=3.7e-12 Score=94.60 Aligned_cols=85 Identities=21% Similarity=0.280 Sum_probs=72.6
Q ss_pred CCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcc--cccEEEEEeC--CCceEEeeeC
Q psy7938 190 SKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKIT--SFPTLKLYAK--DDNRVIDYNG 263 (305)
Q Consensus 190 ~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~--~~Ptl~~f~~--g~~~~~~~~g 263 (305)
++++++.|+++||++|+.+.+.++++|+.++ +++.|+.+|++.+.. ..+++. ++|++++++. |.+ .....|
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~--~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k-~~~~~~ 88 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFK--GKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKK-YLMPEE 88 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhC--CeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccc-cCCCcc
Confidence 6899999999999999999999999999996 479999999998754 889999 9999999998 433 333334
Q ss_pred CCCHHHHHHHHHhc
Q psy7938 264 ERVLEALSNFVESG 277 (305)
Q Consensus 264 ~~~~~~l~~fi~~~ 277 (305)
..+.+.|.+||.+.
T Consensus 89 ~~~~~~l~~fi~~~ 102 (103)
T cd02982 89 ELTAESLEEFVEDF 102 (103)
T ss_pred ccCHHHHHHHHHhh
Confidence 55999999999863
No 114
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.35 E-value=4.6e-13 Score=98.81 Aligned_cols=86 Identities=17% Similarity=0.305 Sum_probs=70.3
Q ss_pred HHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCC
Q psy7938 34 RSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMS 113 (305)
Q Consensus 34 ~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~ 113 (305)
..+++.||++||++|+.+.|.+.++ ...+.+++.|+.+|++ ++..++++|||.
T Consensus 15 ~~vvi~f~~~~C~~C~~~~~~l~~~-------------------------~~~~~~~~~~~~vd~~--~~~~~~~~~~v~ 67 (101)
T TIGR01068 15 KPVLVDFWAPWCGPCKMIAPILEEL-------------------------AKEYEGKVKFVKLNVD--ENPDIAAKYGIR 67 (101)
T ss_pred CcEEEEEECCCCHHHHHhCHHHHHH-------------------------HHHhcCCeEEEEEECC--CCHHHHHHcCCC
Confidence 4788899999999999888777666 2344467999999999 788999999998
Q ss_pred CCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHH
Q psy7938 114 KDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEF 151 (305)
Q Consensus 114 ~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~ 151 (305)
++|++++|+.|.....+ .|..+.+.+.+|+.+.
T Consensus 68 --~~P~~~~~~~g~~~~~~---~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 68 --SIPTLLLFKNGKEVDRS---VGALPKAALKQLINKN 100 (101)
T ss_pred --cCCEEEEEeCCcEeeee---cCCCCHHHHHHHHHhh
Confidence 99999999877654444 3667889999998865
No 115
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.35 E-value=1.9e-12 Score=98.30 Aligned_cols=89 Identities=16% Similarity=0.294 Sum_probs=63.8
Q ss_pred HhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc-ccCCccc--ccEEEEEeCCCceEE---
Q psy7938 186 AFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL-EHTKITS--FPTLKLYAKDDNRVI--- 259 (305)
Q Consensus 186 v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~-~~~~i~~--~Ptl~~f~~g~~~~~--- 259 (305)
....+++++|.||++||++|+.+.|.+.+.+.......+++.+.+|.+.... ..+++.+ +||+++|+++++...
T Consensus 15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~ 94 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEII 94 (117)
T ss_pred HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhc
Confidence 3467899999999999999999999999987765434467766666554333 6788876 999999986555433
Q ss_pred eeeCCCCHHHHHHHH
Q psy7938 260 DYNGERVLEALSNFV 274 (305)
Q Consensus 260 ~~~g~~~~~~l~~fi 274 (305)
...|..+...+..+|
T Consensus 95 ~~~~~~~~~~f~~~~ 109 (117)
T cd02959 95 NKKGNPNYKYFYSSA 109 (117)
T ss_pred cCCCCccccccCCCH
Confidence 455555554444433
No 116
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.35 E-value=4.6e-13 Score=99.48 Aligned_cols=90 Identities=23% Similarity=0.496 Sum_probs=75.6
Q ss_pred HHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCC
Q psy7938 34 RSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMS 113 (305)
Q Consensus 34 ~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~ 113 (305)
.++++.|+++||++|+.++|.+.++ +.++++++.|+.||++ ++.++++.|||.
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~v-------------------------A~~~~~~v~f~~vd~~--~~~~~~~~~~i~ 65 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEV-------------------------AKKFKGKLLFVVVDAD--DFGRHLEYFGLK 65 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHH-------------------------HHHhCCeEEEEEEchH--hhHHHHHHcCCC
Confidence 5788899999999999998888888 5666789999999999 889999999996
Q ss_pred CCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHH
Q psy7938 114 KDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEF 151 (305)
Q Consensus 114 ~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~ 151 (305)
..++|++++++..+. .+|....+..+.++|.+|+.++
T Consensus 66 ~~~~P~~~~~~~~~~-~k~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 66 EEDLPVIAIINLSDG-KKYLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred hhhCCEEEEEecccc-cccCCCccccCHHHHHHHHHhh
Confidence 568999999998422 4565544556899999999876
No 117
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.35 E-value=9.9e-14 Score=102.09 Aligned_cols=87 Identities=18% Similarity=0.367 Sum_probs=68.8
Q ss_pred HHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcC
Q psy7938 32 TVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFG 111 (305)
Q Consensus 32 ~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~ 111 (305)
+...+++.||++||++|+.+.|.+..++..++ .++.+.|+.+||+ ++..++++|+
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-----------------------~~~~~~~~~v~~~--~~~~~~~~~~ 68 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELK-----------------------GDGKVVVAKVDCT--ANNDLCSEYG 68 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhc-----------------------cCCceEEEEeecc--chHHHHHhCC
Confidence 33488999999999999999888777633321 1467999999999 7899999999
Q ss_pred CCCCCCCeEEEEecC-cCceeccCCCCCCCHHHHHHHH
Q psy7938 112 MSKDEVPSLRLIRLE-EDMAKYKPATPEISVDTVRSFV 148 (305)
Q Consensus 112 I~~~~~Ptl~~~~~~-~~~~~~~~~~~~~~~~~l~~fv 148 (305)
|. ++||+++|+.+ .....| .|..+.+++.+|+
T Consensus 69 i~--~~Pt~~~~~~~~~~~~~~---~g~~~~~~i~~~~ 101 (101)
T cd02961 69 VR--GYPTIKLFPNGSKEPVKY---EGPRTLESLVEFI 101 (101)
T ss_pred CC--CCCEEEEEcCCCcccccC---CCCcCHHHHHhhC
Confidence 98 99999999987 444455 3667888888774
No 118
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.33 E-value=6.6e-13 Score=100.36 Aligned_cols=87 Identities=14% Similarity=0.133 Sum_probs=69.4
Q ss_pred HHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCC
Q psy7938 34 RSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMS 113 (305)
Q Consensus 34 ~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~ 113 (305)
..+++.||++||++|+.++|++.+++ ..+ +++.|..+|.+ +++.++++|+|.
T Consensus 23 ~~vvv~f~a~wC~~C~~~~~~l~~la-------------------------~~~-~~i~~~~vd~d--~~~~l~~~~~v~ 74 (113)
T cd02975 23 VDLVVFSSKEGCQYCEVTKQLLEELS-------------------------ELS-DKLKLEIYDFD--EDKEKAEKYGVE 74 (113)
T ss_pred eEEEEEeCCCCCCChHHHHHHHHHHH-------------------------Hhc-CceEEEEEeCC--cCHHHHHHcCCC
Confidence 44677799999999999998888872 222 56999999999 789999999998
Q ss_pred CCCCCeEEEEecCcCce--eccCCCCCCCHHHHHHHHHHHHc
Q psy7938 114 KDEVPSLRLIRLEEDMA--KYKPATPEISVDTVRSFVTEFLA 153 (305)
Q Consensus 114 ~~~~Ptl~~~~~~~~~~--~~~~~~~~~~~~~l~~fv~~~~~ 153 (305)
+.||+++|+.|+... ++. |..+..++.+|+...+.
T Consensus 75 --~vPt~~i~~~g~~~~~~~~~---G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 75 --RVPTTIFLQDGGKDGGIRYY---GLPAGYEFASLIEDIVR 111 (113)
T ss_pred --cCCEEEEEeCCeecceEEEE---ecCchHHHHHHHHHHHh
Confidence 999999999764323 342 56677889999988753
No 119
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.32 E-value=1.7e-10 Score=94.83 Aligned_cols=168 Identities=16% Similarity=0.244 Sum_probs=129.0
Q ss_pred hhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCCCCCCCeEEEEecCcC-ceeccCCCCC-CCHHHHHHHHHHHHcC
Q psy7938 77 VRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEED-MAKYKPATPE-ISVDTVRSFVTEFLAG 154 (305)
Q Consensus 77 ~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~-~~~~~~~~~~-~~~~~l~~fv~~~~~~ 154 (305)
...+...+..+.+.+.|+.+.- ..++..+|+. . |++++|+.+.. ...|. |. .+.++|.+||....
T Consensus 9 ~~~f~~~A~~~~~~~~F~~~~~-----~~~~~~~~~~--~-p~i~~~k~~~~~~~~y~---~~~~~~~~l~~fI~~~~-- 75 (184)
T PF13848_consen 9 FEIFEEAAEKLKGDYQFGVTFN-----EELAKKYGIK--E-PTIVVYKKFDEKPVVYD---GDKFTPEELKKFIKKNS-- 75 (184)
T ss_dssp HHHHHHHHHHHTTTSEEEEEE------HHHHHHCTCS--S-SEEEEEECTTTSEEEES---SSTTSHHHHHHHHHHHS--
T ss_pred HHHHHHHHHhCcCCcEEEEEcH-----HHHHHHhCCC--C-CcEEEeccCCCCceecc---cccCCHHHHHHHHHHhc--
Confidence 4445555666677788998873 4689999996 4 99999998543 34553 44 79999999999983
Q ss_pred cccccccCCCCCCccccCCcEEecccChhHHHhcCCCc-EEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCC
Q psy7938 155 NLKQHLLSQPLPEDWDKNAVKVLVASNFDEIAFDKSKH-VLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDAT 233 (305)
Q Consensus 155 ~~~~~~~s~~~p~~~~~~~v~~l~~~~f~~~v~~~~~~-~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~ 233 (305)
-+.|..++..++..+.. .+.+ +++.|..........+...+..+|..++ +.+.|+.+|++
T Consensus 76 ----------------~P~v~~~t~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~--~~~~f~~~d~~ 136 (184)
T PF13848_consen 76 ----------------FPLVPELTPENFEKLFS-SPKPPVLILFDNKDNESTEAFKKELQDIAKKFK--GKINFVYVDAD 136 (184)
T ss_dssp ----------------STSCEEESTTHHHHHHS-TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTT--TTSEEEEEETT
T ss_pred ----------------cccccccchhhHHHHhc-CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcC--CeEEEEEeehH
Confidence 23489999999998774 4444 8888887778888999999999999996 47899999998
Q ss_pred cccc--ccCCcc--cccEEEEEeCCCce-EEeeeCCCCHHHHHHHHHh
Q psy7938 234 VNEL--EHTKIT--SFPTLKLYAKDDNR-VIDYNGERVLEALSNFVES 276 (305)
Q Consensus 234 ~~~~--~~~~i~--~~Ptl~~f~~g~~~-~~~~~g~~~~~~l~~fi~~ 276 (305)
.... ..++++ .+|+++++...... ...+.|..+.+.|.+|+++
T Consensus 137 ~~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 137 DFPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp TTHHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred HhHHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 5443 788887 89999999954432 3334889999999999974
No 120
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.32 E-value=2.7e-13 Score=110.28 Aligned_cols=85 Identities=14% Similarity=0.199 Sum_probs=69.2
Q ss_pred HHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCCC
Q psy7938 35 SFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMSK 114 (305)
Q Consensus 35 ~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~~ 114 (305)
.+|++||++||++|+.+.|.+..+ +.++ ..+.|++||++ +. .++.+|+|.
T Consensus 85 ~VVV~Fya~wc~~Ck~m~~~l~~L-------------------------A~~~-~~vkF~kVd~d--~~-~l~~~f~v~- 134 (175)
T cd02987 85 TVVVHIYEPGIPGCAALNSSLLCL-------------------------AAEY-PAVKFCKIRAS--AT-GASDEFDTD- 134 (175)
T ss_pred EEEEEEECCCCchHHHHHHHHHHH-------------------------HHHC-CCeEEEEEecc--ch-hhHHhCCCC-
Confidence 688899999999999999988888 3333 46999999999 55 899999998
Q ss_pred CCCCeEEEEecCcCceeccCC----CCCCCHHHHHHHHHH
Q psy7938 115 DEVPSLRLIRLEEDMAKYKPA----TPEISVDTVRSFVTE 150 (305)
Q Consensus 115 ~~~Ptl~~~~~~~~~~~~~~~----~~~~~~~~l~~fv~~ 150 (305)
++||+++|+.|..+..+.+- ....+.+.|..++.+
T Consensus 135 -~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 135 -ALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred -CCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 99999999999766555431 236788888888765
No 121
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.32 E-value=2e-13 Score=100.30 Aligned_cols=83 Identities=19% Similarity=0.257 Sum_probs=65.8
Q ss_pred HHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCC
Q psy7938 33 VRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGM 112 (305)
Q Consensus 33 ~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I 112 (305)
.+.+++.||++||++|+.+.|.+.+++ ..+.+.+.++++|++ ++..++.+|+|
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~-------------------------~~~~~~i~~~~vd~~--~~~~~~~~~~i 66 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELA-------------------------KEAFPSVLFLSIEAE--ELPEISEKFEI 66 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHH-------------------------HHhCCceEEEEEccc--cCHHHHHhcCC
Confidence 377889999999999999988777662 222467999999999 88899999999
Q ss_pred CCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHH
Q psy7938 113 SKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFV 148 (305)
Q Consensus 113 ~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv 148 (305)
. ++||+++|+.|+...++. +.+.++|.+.+
T Consensus 67 ~--~~Pt~~~~~~g~~~~~~~----g~~~~~l~~~~ 96 (97)
T cd02984 67 T--AVPTFVFFRNGTIVDRVS----GADPKELAKKV 96 (97)
T ss_pred c--cccEEEEEECCEEEEEEe----CCCHHHHHHhh
Confidence 8 999999999876544552 34667776654
No 122
>PLN02309 5'-adenylylsulfate reductase
Probab=99.29 E-value=5.6e-13 Score=122.72 Aligned_cols=106 Identities=16% Similarity=0.230 Sum_probs=78.3
Q ss_pred cCceecCCCCCCCCh---hHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCc-eE
Q psy7938 16 EDMAKYKPATPEINV---DTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNL-KV 91 (305)
Q Consensus 16 ~~~~~~~~~~~~~~~---~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 91 (305)
.+++.++.++++... +..+.+|+.||||||++|+.+.|.|.+++..+ .+ .+
T Consensus 345 ~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~-------------------------~~~~V 399 (457)
T PLN02309 345 QNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKL-------------------------AGSGV 399 (457)
T ss_pred CCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHh-------------------------ccCCe
Confidence 456667655554322 24556899999999999999999988884433 23 49
Q ss_pred EEEEEeCCchhHHHHHH-HcCCCCCCCCeEEEEecCcC-ceeccCCCCCCCHHHHHHHHHHH
Q psy7938 92 LFVTINTDEEDHQKILE-FFGMSKDEVPSLRLIRLEED-MAKYKPATPEISVDTVRSFVTEF 151 (305)
Q Consensus 92 ~~~~vd~~~~~~~~l~~-~~~I~~~~~Ptl~~~~~~~~-~~~~~~~~~~~~~~~l~~fv~~~ 151 (305)
.|++|||+.. +..+|. +|+|. ++||+++|..|.. ..+|. .+.++.++|..|+...
T Consensus 400 ~f~kVD~d~~-~~~la~~~~~I~--~~PTil~f~~g~~~~v~Y~--~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 400 KVAKFRADGD-QKEFAKQELQLG--SFPTILLFPKNSSRPIKYP--SEKRDVDSLLSFVNSL 456 (457)
T ss_pred EEEEEECCCc-chHHHHhhCCCc--eeeEEEEEeCCCCCeeecC--CCCcCHHHHHHHHHHh
Confidence 9999999832 356785 69998 9999999998753 23452 3479999999999864
No 123
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.29 E-value=2.8e-11 Score=85.88 Aligned_cols=78 Identities=15% Similarity=0.363 Sum_probs=66.1
Q ss_pred EEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEEEeCCCceEEeeeCCCCHHHH
Q psy7938 193 VLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLYAKDDNRVIDYNGERVLEAL 270 (305)
Q Consensus 193 ~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~~~~l 270 (305)
.+..||++||++|+.+.+.+++++..+. ..+.+..+|.+.+.. +++++.++||+++ +| . .++.|..+.+.|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g-~--~~~~G~~~~~~l 74 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMG--DAVEVEYINVMENPQKAMEYGIMAVPAIVI--NG-D--VEFIGAPTKEEL 74 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhc--CceEEEEEeCccCHHHHHHcCCccCCEEEE--CC-E--EEEecCCCHHHH
Confidence 4678999999999999999999999985 358889999876665 7899999999986 44 3 478899999999
Q ss_pred HHHHHhc
Q psy7938 271 SNFVESG 277 (305)
Q Consensus 271 ~~fi~~~ 277 (305)
.++|.+.
T Consensus 75 ~~~l~~~ 81 (82)
T TIGR00411 75 VEAIKKR 81 (82)
T ss_pred HHHHHhh
Confidence 9998753
No 124
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.28 E-value=8.3e-13 Score=97.10 Aligned_cols=85 Identities=18% Similarity=0.218 Sum_probs=68.6
Q ss_pred HHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcC
Q psy7938 32 TVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFG 111 (305)
Q Consensus 32 ~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~ 111 (305)
..+.+++.||++||++|+.+.|.+.++ ..++.+.+.++.+|++ +.++++++++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l-------------------------~~~~~~~v~~~~id~d--~~~~l~~~~~ 64 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKV-------------------------IDEFDGAVHFVEIDID--EDQEIAEAAG 64 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHH-------------------------HHHhCCceEEEEEECC--CCHHHHHHCC
Confidence 345678899999999999888777665 2334467999999999 7889999999
Q ss_pred CCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHH
Q psy7938 112 MSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFV 148 (305)
Q Consensus 112 I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv 148 (305)
|. ++|++++|+.|+.+..+ .|..+.+++.+|+
T Consensus 65 v~--~vPt~~i~~~g~~v~~~---~g~~~~~~~~~~l 96 (97)
T cd02949 65 IM--GTPTVQFFKDKELVKEI---SGVKMKSEYREFI 96 (97)
T ss_pred Ce--eccEEEEEECCeEEEEE---eCCccHHHHHHhh
Confidence 98 99999999987655555 3677888888876
No 125
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.27 E-value=2.7e-11 Score=102.21 Aligned_cols=88 Identities=18% Similarity=0.265 Sum_probs=71.5
Q ss_pred CCcEEEEEEC---CCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEEEeCCCceEEeeeCC
Q psy7938 190 SKHVLVEFYA---PWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLYAKDDNRVIDYNGE 264 (305)
Q Consensus 190 ~~~~lv~f~~---~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f~~g~~~~~~~~g~ 264 (305)
+...++.|++ +||++|+.+.|.+++++..+. .-.+.++.+|.+.+.. .+|+|.++||+++|++|.....++.|.
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~-~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~ 97 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP-KLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGI 97 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC-CceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeec
Confidence 3444666888 999999999999999999984 2346677777655554 899999999999999986633689999
Q ss_pred CCHHHHHHHHHhcC
Q psy7938 265 RVLEALSNFVESGG 278 (305)
Q Consensus 265 ~~~~~l~~fi~~~~ 278 (305)
.+.+.+.+||....
T Consensus 98 ~~~~~l~~~i~~~~ 111 (215)
T TIGR02187 98 PAGYEFAALIEDIV 111 (215)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998774
No 126
>PTZ00051 thioredoxin; Provisional
Probab=99.20 E-value=2.7e-12 Score=94.40 Aligned_cols=81 Identities=12% Similarity=0.215 Sum_probs=62.7
Q ss_pred hHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHc
Q psy7938 31 DTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFF 110 (305)
Q Consensus 31 ~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~ 110 (305)
+....+++.||++||++|+.+.|.+.++.. .+ ..+.|+.+|++ ++..++++|
T Consensus 16 ~~~~~vli~f~~~~C~~C~~~~~~l~~l~~-------------------------~~-~~~~~~~vd~~--~~~~~~~~~ 67 (98)
T PTZ00051 16 SQNELVIVDFYAEWCGPCKRIAPFYEECSK-------------------------EY-TKMVFVKVDVD--ELSEVAEKE 67 (98)
T ss_pred hcCCeEEEEEECCCCHHHHHHhHHHHHHHH-------------------------Hc-CCcEEEEEECc--chHHHHHHC
Confidence 344577889999999999999887777622 22 34889999999 888999999
Q ss_pred CCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHH
Q psy7938 111 GMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVR 145 (305)
Q Consensus 111 ~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~ 145 (305)
+|. ++||+++|+.|+....+. | ...++|+
T Consensus 68 ~v~--~~Pt~~~~~~g~~~~~~~---G-~~~~~~~ 96 (98)
T PTZ00051 68 NIT--SMPTFKVFKNGSVVDTLL---G-ANDEALK 96 (98)
T ss_pred CCc--eeeEEEEEeCCeEEEEEe---C-CCHHHhh
Confidence 998 999999999887655663 2 3445554
No 127
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.20 E-value=7.5e-12 Score=96.45 Aligned_cols=98 Identities=11% Similarity=0.129 Sum_probs=71.6
Q ss_pred hHH-HHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCch--------
Q psy7938 31 DTV-RSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEE-------- 101 (305)
Q Consensus 31 ~~~-~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-------- 101 (305)
++. +++++.||++||++|+.+.|.+....... ..+.+.+.++.+|.+..
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~----------------------~~~~~~~~~~~i~~d~~~~~~~~~~ 68 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQ----------------------AYIRAHFVVVYINIDGDKEVTDFDG 68 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHH----------------------HHHHhheEEEEEEccCCceeeccCC
Confidence 445 78899999999999998887665431111 11124577889998732
Q ss_pred ---hHHHHHHHcCCCCCCCCeEEEEecC--cCceeccCCCCCCCHHHHHHHHHHHHcCc
Q psy7938 102 ---DHQKILEFFGMSKDEVPSLRLIRLE--EDMAKYKPATPEISVDTVRSFVTEFLAGN 155 (305)
Q Consensus 102 ---~~~~l~~~~~I~~~~~Ptl~~~~~~--~~~~~~~~~~~~~~~~~l~~fv~~~~~~~ 155 (305)
....++.+|+|. ++||+++|+.+ +.+.++ .|..+.+.+.+++...+++.
T Consensus 69 ~~~~~~~l~~~~~v~--~~Pt~~~~~~~gg~~~~~~---~G~~~~~~~~~~l~~~~~~~ 122 (125)
T cd02951 69 EALSEKELARKYRVR--FTPTVIFLDPEGGKEIARL---PGYLPPDEFLAYLEYVQEKA 122 (125)
T ss_pred CCccHHHHHHHcCCc--cccEEEEEcCCCCceeEEe---cCCCCHHHHHHHHHHHHhhh
Confidence 247899999998 99999999975 333344 36778899999999987654
No 128
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.19 E-value=3.6e-11 Score=90.67 Aligned_cols=85 Identities=24% Similarity=0.394 Sum_probs=60.9
Q ss_pred cCCCcEEEEEECCCChhhhhHHHHHHHHHH---HhCCCCceEEEEEeCCccc---------------------c-ccCCc
Q psy7938 188 DKSKHVLVEFYAPWCGHCKQLAPIYDKLGE---KFADRDDITIAKIDATVNE---------------------L-EHTKI 242 (305)
Q Consensus 188 ~~~~~~lv~f~~~~C~~C~~~~~~~~~la~---~~~~~~~v~~~~id~~~~~---------------------~-~~~~i 242 (305)
.+++++++.|+++||++|+.+.+.+.+..+ .++ .++.++.+++.... . ..++|
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLK--DDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV 80 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEH--CECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhh--cCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence 467899999999999999999998886443 342 25666666665432 2 67899
Q ss_pred ccccEEEEEeCCCceEEeeeCCCCHHHHHHHH
Q psy7938 243 TSFPTLKLYAKDDNRVIDYNGERVLEALSNFV 274 (305)
Q Consensus 243 ~~~Ptl~~f~~g~~~~~~~~g~~~~~~l~~fi 274 (305)
+++||+++++++++.+..+.|..+.+.|.++|
T Consensus 81 ~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred CccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 99999999986666577899999999998875
No 129
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.18 E-value=8.9e-11 Score=112.43 Aligned_cols=101 Identities=20% Similarity=0.407 Sum_probs=80.1
Q ss_pred cEEe-cccChhHHHh---cCCCcEEEEEECCCChhhhhHHHHH---HHHHHHhCCCCceEEEEEeCCcccc------ccC
Q psy7938 174 VKVL-VASNFDEIAF---DKSKHVLVEFYAPWCGHCKQLAPIY---DKLGEKFADRDDITIAKIDATVNEL------EHT 240 (305)
Q Consensus 174 v~~l-~~~~f~~~v~---~~~~~~lv~f~~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~id~~~~~~------~~~ 240 (305)
.+.+ +.+++++.+. .++++++|+||++||++|+.+.+.. .++.+.++ ++.++++|.+.++. +++
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~---~~~~v~vDvt~~~~~~~~l~~~~ 530 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA---DTVLLQADVTANNAEDVALLKHY 530 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc---CCEEEEEECCCCChhhHHHHHHc
Confidence 4444 3466776653 3578999999999999999998875 67777773 58899999886531 789
Q ss_pred CcccccEEEEEeCCCce--EEeeeCCCCHHHHHHHHHhc
Q psy7938 241 KITSFPTLKLYAKDDNR--VIDYNGERVLEALSNFVESG 277 (305)
Q Consensus 241 ~i~~~Ptl~~f~~g~~~--~~~~~g~~~~~~l~~fi~~~ 277 (305)
++.++||+++|+++++. ..++.|..+.+++.+++++.
T Consensus 531 ~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 531 NVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 99999999999866553 36789999999999999874
No 130
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.17 E-value=1.3e-10 Score=81.26 Aligned_cols=73 Identities=18% Similarity=0.362 Sum_probs=58.2
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccccccCCcccccEEEEEeCCCceEEeeeCC-CCHHHHHH
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKLYAKDDNRVIDYNGE-RVLEALSN 272 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~~~~~i~~~Ptl~~f~~g~~~~~~~~g~-~~~~~l~~ 272 (305)
-|.||++||++|+.+.|.++++++++. ..+.+..+| +.....++++.++||+++ +|+. . +.|. .+.+.|.+
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~--~~~~~~~v~-~~~~a~~~~v~~vPti~i--~G~~--~-~~G~~~~~~~l~~ 73 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELG--IDAEFEKVT-DMNEILEAGVTATPGVAV--DGEL--V-IMGKIPSKEEIKE 73 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcC--CCeEEEEeC-CHHHHHHcCCCcCCEEEE--CCEE--E-EEeccCCHHHHHH
Confidence 378999999999999999999999985 368888887 344457899999999999 4432 3 7774 45578887
Q ss_pred HH
Q psy7938 273 FV 274 (305)
Q Consensus 273 fi 274 (305)
++
T Consensus 74 ~l 75 (76)
T TIGR00412 74 IL 75 (76)
T ss_pred Hh
Confidence 76
No 131
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.14 E-value=4.3e-10 Score=89.24 Aligned_cols=86 Identities=20% Similarity=0.309 Sum_probs=64.2
Q ss_pred CCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCc-----------ccc--ccC---CcccccEEEEEe
Q psy7938 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATV-----------NEL--EHT---KITSFPTLKLYA 252 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~-----------~~~--~~~---~i~~~Ptl~~f~ 252 (305)
.++..+|+||++||++|+...|.+++++++++ -.+..+.+|... ... ..+ ++.++||.++++
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID 126 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVN 126 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEe
Confidence 35567999999999999999999999999983 244444454321 011 224 788999999999
Q ss_pred CCCce-EEeeeCCCCHHHHHHHHHh
Q psy7938 253 KDDNR-VIDYNGERVLEALSNFVES 276 (305)
Q Consensus 253 ~g~~~-~~~~~g~~~~~~l~~fi~~ 276 (305)
+.+.. ...+.|..+.+.+.+.|.+
T Consensus 127 ~~G~~i~~~~~G~~s~~~l~~~I~~ 151 (153)
T TIGR02738 127 VNTRKAYPVLQGAVDEAELANRMDE 151 (153)
T ss_pred CCCCEEEEEeecccCHHHHHHHHHH
Confidence 86553 4468999999999888765
No 132
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.14 E-value=3.4e-10 Score=98.44 Aligned_cols=89 Identities=18% Similarity=0.254 Sum_probs=69.2
Q ss_pred CCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCc-----------cccccCCcccccEEEEEeC-CCc
Q psy7938 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATV-----------NELEHTKITSFPTLKLYAK-DDN 256 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~-----------~~~~~~~i~~~Ptl~~f~~-g~~ 256 (305)
.++.+||+||++||++|+.+.|.++++++.+. -.|..+.+|... .....++|.++|+++++++ |+.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence 46799999999999999999999999999983 234445554422 1127899999999999998 444
Q ss_pred eEEeeeCCCCHHHHHHHHHhcCC
Q psy7938 257 RVIDYNGERVLEALSNFVESGGK 279 (305)
Q Consensus 257 ~~~~~~g~~~~~~l~~fi~~~~~ 279 (305)
......|..+.+.|.+.|...+.
T Consensus 243 v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 243 FTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEEeCCCCHHHHHHHHHHHhc
Confidence 23446688999999999887665
No 133
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.13 E-value=3.1e-10 Score=106.09 Aligned_cols=89 Identities=17% Similarity=0.310 Sum_probs=71.3
Q ss_pred HhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeC----------------------------Cccc-
Q psy7938 186 AFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDA----------------------------TVNE- 236 (305)
Q Consensus 186 v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~----------------------------~~~~- 236 (305)
.++.+++++|.|||+||++|+.+.|.++++++.++. .++.++.|.. +.+.
T Consensus 52 ~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~-~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~ 130 (521)
T PRK14018 52 YLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKF-SSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGT 130 (521)
T ss_pred eccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhcc-CCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHH
Confidence 345789999999999999999999999999999863 2455544432 1111
Q ss_pred c-ccCCcccccEEEEEeCCCceEEeeeCCCCHHHHHHHHH
Q psy7938 237 L-EHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVE 275 (305)
Q Consensus 237 ~-~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~~~~l~~fi~ 275 (305)
. +.++|.++||++++.++++....+.|..+.+.|.++|+
T Consensus 131 lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 131 LAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 1 67899999999988877776888999999999999998
No 134
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.12 E-value=7.8e-12 Score=95.62 Aligned_cols=91 Identities=9% Similarity=0.042 Sum_probs=65.7
Q ss_pred hhHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCch--------
Q psy7938 30 VDTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEE-------- 101 (305)
Q Consensus 30 ~~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-------- 101 (305)
+++...+++.|+++||++|+.+.|.+.++ .+. .++.|++||.+..
T Consensus 20 i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~-------------------------~~~--~~~~~y~vdvd~~~~~~~~~~ 72 (122)
T TIGR01295 20 LDKKETATFFIGRKTCPYCRKFSGTLSGV-------------------------VAQ--TKAPIYYIDSENNGSFEMSSL 72 (122)
T ss_pred HHcCCcEEEEEECCCChhHHHHhHHHHHH-------------------------HHh--cCCcEEEEECCCccCcCcccH
Confidence 34445678889999999999999999888 222 3456777787721
Q ss_pred -hHHHHHHHcCCC--CCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHH
Q psy7938 102 -DHQKILEFFGMS--KDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVT 149 (305)
Q Consensus 102 -~~~~l~~~~~I~--~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~ 149 (305)
+..++.+.|++. ..+.||+++|+.|+.+.+..+ +..+.++|.+|+.
T Consensus 73 ~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v~~~~G--~~~~~~~l~~~~~ 121 (122)
T TIGR01295 73 NDLTAFRSRFGIPTSFMGTPTFVHITDGKQVSVRCG--SSTTAQELQDIAA 121 (122)
T ss_pred HHHHHHHHHcCCcccCCCCCEEEEEeCCeEEEEEeC--CCCCHHHHHHHhh
Confidence 234667777653 126999999999987776642 2567889988864
No 135
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.12 E-value=4.4e-10 Score=85.86 Aligned_cols=88 Identities=11% Similarity=0.135 Sum_probs=63.6
Q ss_pred HhcCCCcEEEEEECCCChhhhhHHHH-H--HHHHHHhCCCCceEEEEEeCCcccc--c--------cCCcccccEEEEEe
Q psy7938 186 AFDKSKHVLVEFYAPWCGHCKQLAPI-Y--DKLGEKFADRDDITIAKIDATVNEL--E--------HTKITSFPTLKLYA 252 (305)
Q Consensus 186 v~~~~~~~lv~f~~~~C~~C~~~~~~-~--~~la~~~~~~~~v~~~~id~~~~~~--~--------~~~i~~~Ptl~~f~ 252 (305)
....+|+++|+|+++||++|+.|... | .+++..+. .+++++++|.+.+.. + .+++.++|++++++
T Consensus 11 Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~--~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~ 88 (124)
T cd02955 11 ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN--ENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLT 88 (124)
T ss_pred HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh--CCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEEC
Confidence 34678999999999999999999763 3 36777763 479999999987552 1 36899999999999
Q ss_pred CCCceEEeeeCC-----CCHHHHHHHHH
Q psy7938 253 KDDNRVIDYNGE-----RVLEALSNFVE 275 (305)
Q Consensus 253 ~g~~~~~~~~g~-----~~~~~l~~fi~ 275 (305)
++++.+....+. .+...+..+++
T Consensus 89 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (124)
T cd02955 89 PDLKPFFGGTYFPPEDRYGRPGFKTVLE 116 (124)
T ss_pred CCCCEEeeeeecCCCCcCCCcCHHHHHH
Confidence 887754333332 33345555554
No 136
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.11 E-value=2e-11 Score=87.98 Aligned_cols=82 Identities=17% Similarity=0.294 Sum_probs=66.0
Q ss_pred HHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCC
Q psy7938 34 RSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMS 113 (305)
Q Consensus 34 ~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~ 113 (305)
.++++.||++||++|+.+.+.+.++ ... .+.+.|+.+|++ ....++..+++.
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~-------------------------~~~-~~~~~~~~i~~~--~~~~~~~~~~v~ 62 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEEL-------------------------AEE-YPKVKFVKVDVD--ENPELAEEYGVR 62 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHH-------------------------HHH-CCCceEEEEECC--CChhHHHhcCcc
Confidence 6788999999999999887766555 122 467999999999 778999999998
Q ss_pred CCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHH
Q psy7938 114 KDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFV 148 (305)
Q Consensus 114 ~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv 148 (305)
++|++++|+.|.....+. |..+.+.|.+++
T Consensus 63 --~~P~~~~~~~g~~~~~~~---g~~~~~~l~~~i 92 (93)
T cd02947 63 --SIPTFLFFKNGKEVDRVV---GADPKEELEEFL 92 (93)
T ss_pred --cccEEEEEECCEEEEEEe---cCCCHHHHHHHh
Confidence 999999999886555553 556778888876
No 137
>PHA02125 thioredoxin-like protein
Probab=99.08 E-value=8e-10 Score=77.03 Aligned_cols=67 Identities=25% Similarity=0.508 Sum_probs=50.9
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEEEeCCCceEEeeeCC-CCHHHH
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLYAKDDNRVIDYNGE-RVLEAL 270 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f~~g~~~~~~~~g~-~~~~~l 270 (305)
++.||++||++|+.+.|.|.+++ +.++++|.+.+.. .+++|.++||++ .| ....++.|. .+...|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~--------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g-~~~~~~~G~~~~~~~l 69 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE--------YTYVDVDTDEGVELTAKHHIRSLPTLV---NT-STLDRFTGVPRNVAEL 69 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh--------heEEeeeCCCCHHHHHHcCCceeCeEE---CC-EEEEEEeCCCCcHHHH
Confidence 78999999999999999997653 4578888877654 899999999998 34 325677884 444555
Q ss_pred HH
Q psy7938 271 SN 272 (305)
Q Consensus 271 ~~ 272 (305)
.+
T Consensus 70 ~~ 71 (75)
T PHA02125 70 KE 71 (75)
T ss_pred HH
Confidence 44
No 138
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.08 E-value=4e-11 Score=98.80 Aligned_cols=83 Identities=8% Similarity=0.122 Sum_probs=66.4
Q ss_pred HHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCCC
Q psy7938 35 SFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMSK 114 (305)
Q Consensus 35 ~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~~ 114 (305)
.+||+||++||++|+.++|.+..+ +.++ ..+.|++||++ . .+..|+|+
T Consensus 104 ~VVV~Fya~wc~~C~~m~~~l~~L-------------------------A~k~-~~vkFvkI~ad--~---~~~~~~i~- 151 (192)
T cd02988 104 WVVVHLYKDGIPLCRLLNQHLSEL-------------------------ARKF-PDTKFVKIIST--Q---CIPNYPDK- 151 (192)
T ss_pred EEEEEEECCCCchHHHHHHHHHHH-------------------------HHHC-CCCEEEEEEhH--H---hHhhCCCC-
Confidence 578899999999999999999998 3333 45899999998 3 26899998
Q ss_pred CCCCeEEEEecCcCceeccCC----CCCCCHHHHHHHHHH
Q psy7938 115 DEVPSLRLIRLEEDMAKYKPA----TPEISVDTVRSFVTE 150 (305)
Q Consensus 115 ~~~Ptl~~~~~~~~~~~~~~~----~~~~~~~~l~~fv~~ 150 (305)
++||+++|+.|..+..+.+- +...+.++|..++.+
T Consensus 152 -~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 152 -NLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred -CCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 99999999999876666542 225778888877764
No 139
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.05 E-value=2e-09 Score=88.69 Aligned_cols=86 Identities=14% Similarity=0.213 Sum_probs=67.0
Q ss_pred cCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc-------------------------cccCCc
Q psy7938 188 DKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE-------------------------LEHTKI 242 (305)
Q Consensus 188 ~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~-------------------------~~~~~i 242 (305)
..+++++|.||++||++|+...|.+.++++. ++.++.|+.+.+. ...|++
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~-----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 140 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV 140 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc-----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCC
Confidence 3578999999999999999999999988642 3455555543211 035789
Q ss_pred ccccEEEEEeCCCceEEeeeCCCCHHHHHHHHHhcC
Q psy7938 243 TSFPTLKLYAKDDNRVIDYNGERVLEALSNFVESGG 278 (305)
Q Consensus 243 ~~~Ptl~~f~~g~~~~~~~~g~~~~~~l~~fi~~~~ 278 (305)
.++|+.++++++++....+.|..+.+.+.++|....
T Consensus 141 ~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 141 YGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred CcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 999999999877777888999999988888887654
No 140
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.05 E-value=8.6e-10 Score=86.55 Aligned_cols=74 Identities=19% Similarity=0.361 Sum_probs=56.9
Q ss_pred CCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCC------CceEEEEEeCCccc--------------------------
Q psy7938 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADR------DDITIAKIDATVNE-------------------------- 236 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~------~~v~~~~id~~~~~-------------------------- 236 (305)
.+++++|+|||+||++|+.+.|.+.++.+.++++ .++.++.|+.+.+.
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 4789999999999999999999999998877532 25777777655431
Q ss_pred c-ccCCcccccEEEEEeCCCceEEeeeC
Q psy7938 237 L-EHTKITSFPTLKLYAKDDNRVIDYNG 263 (305)
Q Consensus 237 ~-~~~~i~~~Ptl~~f~~g~~~~~~~~g 263 (305)
. ..|++.++|++++++++++ +..-.|
T Consensus 104 l~~~y~v~~iPt~vlId~~G~-Vv~~~~ 130 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGD-VLAANA 130 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCc-EEeeCh
Confidence 1 4567889999999998877 444443
No 141
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.04 E-value=2.1e-10 Score=81.31 Aligned_cols=78 Identities=10% Similarity=0.067 Sum_probs=60.8
Q ss_pred hhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCCCCCC
Q psy7938 38 TEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMSKDEV 117 (305)
Q Consensus 38 v~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~~~~~ 117 (305)
.-|+++||++|+.+.|.+.++ +..+++.+.+..||.+ +.+++++++||+ ++
T Consensus 4 ~~f~~~~C~~C~~~~~~l~~l-------------------------~~~~~~~~~~~~vd~~--~~~~~~~~~~v~--~v 54 (82)
T TIGR00411 4 ELFTSPTCPYCPAAKRVVEEV-------------------------AKEMGDAVEVEYINVM--ENPQKAMEYGIM--AV 54 (82)
T ss_pred EEEECCCCcchHHHHHHHHHH-------------------------HHHhcCceEEEEEeCc--cCHHHHHHcCCc--cC
Confidence 458999999999888887777 2333456899999998 778999999998 99
Q ss_pred CeEEEEecCcCceeccCCCCCCCHHHHHHHHHHH
Q psy7938 118 PSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEF 151 (305)
Q Consensus 118 Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~ 151 (305)
||+++ .|. ..+ .|..+.+++.+++...
T Consensus 55 Pt~~~--~g~--~~~---~G~~~~~~l~~~l~~~ 81 (82)
T TIGR00411 55 PAIVI--NGD--VEF---IGAPTKEELVEAIKKR 81 (82)
T ss_pred CEEEE--CCE--EEE---ecCCCHHHHHHHHHhh
Confidence 99986 332 244 2667888998888764
No 142
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.04 E-value=1.3e-09 Score=79.54 Aligned_cols=67 Identities=33% Similarity=0.617 Sum_probs=53.2
Q ss_pred CCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc---------------------------cccCCc
Q psy7938 190 SKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE---------------------------LEHTKI 242 (305)
Q Consensus 190 ~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~---------------------------~~~~~i 242 (305)
+++++|.||++||++|+...|.+.++.+.++...++.++.|..+... .+.++|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 57899999999999999999999999999984457777777666542 145679
Q ss_pred ccccEEEEEeCCCc
Q psy7938 243 TSFPTLKLYAKDDN 256 (305)
Q Consensus 243 ~~~Ptl~~f~~g~~ 256 (305)
.++|+++++.++++
T Consensus 81 ~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 81 NGIPTLVLLDPDGK 94 (95)
T ss_dssp TSSSEEEEEETTSB
T ss_pred CcCCEEEEECCCCC
Confidence 99999999998875
No 143
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.00 E-value=1.2e-09 Score=84.91 Aligned_cols=68 Identities=26% Similarity=0.517 Sum_probs=53.7
Q ss_pred CCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCC-CceEEEEEeCCccc--------------------------c-ccC
Q psy7938 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADR-DDITIAKIDATVNE--------------------------L-EHT 240 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~id~~~~~--------------------------~-~~~ 240 (305)
.++.++|.||++||++|+.+.|.++++++.++++ .++.++.++.+.+. . +.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 4789999999999999999999999999998754 34555555443321 1 458
Q ss_pred CcccccEEEEEeCCCc
Q psy7938 241 KITSFPTLKLYAKDDN 256 (305)
Q Consensus 241 ~i~~~Ptl~~f~~g~~ 256 (305)
+|.++|++++++++++
T Consensus 96 ~v~~iPt~~lid~~G~ 111 (132)
T cd02964 96 KVEGIPTLVVLKPDGD 111 (132)
T ss_pred CCCCCCEEEEECCCCC
Confidence 9999999999998776
No 144
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.00 E-value=4.5e-09 Score=85.50 Aligned_cols=102 Identities=23% Similarity=0.421 Sum_probs=78.8
Q ss_pred cEEecccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcc------------------
Q psy7938 174 VKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVN------------------ 235 (305)
Q Consensus 174 v~~l~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~------------------ 235 (305)
+..++++.+.-.. -.+++++|.||++||++|+...+.+.++++++++ .++.++.++++..
T Consensus 46 ~~~~~g~~~~l~~-~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~-~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~ 123 (173)
T PRK03147 46 LTDLEGKKIELKD-LKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKE-KGVEIIAVNVDETELAVKNFVNRYGLTFPVA 123 (173)
T ss_pred eecCCCCEEeHHH-cCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc-CCeEEEEEEcCCCHHHHHHHHHHhCCCceEE
Confidence 4455555443222 2468899999999999999999999999999975 3466666665432
Q ss_pred -----c-cccCCcccccEEEEEeCCCceEEeeeCCCCHHHHHHHHHhc
Q psy7938 236 -----E-LEHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVESG 277 (305)
Q Consensus 236 -----~-~~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~~~~l~~fi~~~ 277 (305)
. .+.+++.++|+++++.++++....+.|..+.+.+.+++++.
T Consensus 124 ~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 124 IDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred ECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 1 17789999999999998877666889999999999998854
No 145
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.99 E-value=1.5e-10 Score=87.54 Aligned_cols=68 Identities=9% Similarity=0.081 Sum_probs=55.2
Q ss_pred HHHhhhhhc-------CcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCch-----
Q psy7938 34 RSFVTEFLA-------GNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEE----- 101 (305)
Q Consensus 34 ~~~iv~f~a-------~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~----- 101 (305)
.++++.||| +||++|+.+.|.++++ +.++++.+.|++||++..
T Consensus 22 ~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l-------------------------~~~~~~~v~fv~Vdvd~~~~w~d 76 (119)
T cd02952 22 KPIFILFYGDKDPDGQSWCPDCVKAEPVVREA-------------------------LKAAPEDCVFIYCDVGDRPYWRD 76 (119)
T ss_pred CeEEEEEEccCCCCCCCCCHhHHhhchhHHHH-------------------------HHHCCCCCEEEEEEcCCcccccC
Confidence 578889999 9999999999999888 344455789999999732
Q ss_pred hHHHHHHHcCCCCCCCCeEEEEecCc
Q psy7938 102 DHQKILEFFGMSKDEVPSLRLIRLEE 127 (305)
Q Consensus 102 ~~~~l~~~~~I~~~~~Ptl~~~~~~~ 127 (305)
.+..++..++|. .++||+++|+.++
T Consensus 77 ~~~~~~~~~~I~-~~iPT~~~~~~~~ 101 (119)
T cd02952 77 PNNPFRTDPKLT-TGVPTLLRWKTPQ 101 (119)
T ss_pred cchhhHhccCcc-cCCCEEEEEcCCc
Confidence 246899999995 4899999997653
No 146
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.98 E-value=3.2e-09 Score=81.90 Aligned_cols=78 Identities=21% Similarity=0.286 Sum_probs=60.1
Q ss_pred CCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCC-----------------------ccc--cccCCcc
Q psy7938 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDAT-----------------------VNE--LEHTKIT 243 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~-----------------------~~~--~~~~~i~ 243 (305)
.+++++|.||++||++|+.+.|.++++++.+ ++.++.|+.+ .+. ...|++.
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~----~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~ 99 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG----RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVY 99 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc----CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCC
Confidence 3789999999999999999999999998776 2555545431 111 2568999
Q ss_pred cccEEEEEeCCCceEEeeeCCCCHHHH
Q psy7938 244 SFPTLKLYAKDDNRVIDYNGERVLEAL 270 (305)
Q Consensus 244 ~~Ptl~~f~~g~~~~~~~~g~~~~~~l 270 (305)
++|+.+++.++++....+.|..+.+.|
T Consensus 100 ~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 100 GVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CCCeEEEECCCceEEEEEeccCChHhc
Confidence 999888888777767888998887644
No 147
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.98 E-value=4.7e-09 Score=85.56 Aligned_cols=85 Identities=18% Similarity=0.244 Sum_probs=65.8
Q ss_pred CCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCc-------------------------cccccCCcc
Q psy7938 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATV-------------------------NELEHTKIT 243 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~-------------------------~~~~~~~i~ 243 (305)
.+++++|+||++||++|+.+.|.++++++. ++.++.|+.+. .....|++.
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~ 136 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVY 136 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCe
Confidence 578999999999999999999999988753 23444443211 111567899
Q ss_pred cccEEEEEeCCCceEEeeeCCCCHHHHHHHHHhcC
Q psy7938 244 SFPTLKLYAKDDNRVIDYNGERVLEALSNFVESGG 278 (305)
Q Consensus 244 ~~Ptl~~f~~g~~~~~~~~g~~~~~~l~~fi~~~~ 278 (305)
++|+.+++.++++....+.|..+.+.+.++|.+..
T Consensus 137 ~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 137 GAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred eCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 99998888877776778899999999999988754
No 148
>PHA02125 thioredoxin-like protein
Probab=98.98 E-value=1.5e-10 Score=80.67 Aligned_cols=70 Identities=14% Similarity=0.256 Sum_probs=49.7
Q ss_pred hhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCCCCC
Q psy7938 37 VTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMSKDE 116 (305)
Q Consensus 37 iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~~~~ 116 (305)
|+.||++||++|+.+.|.+..+ .+.++.||++ ++.+++.+|+|. +
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~-------------------------------~~~~~~vd~~--~~~~l~~~~~v~--~ 46 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV-------------------------------EYTYVDVDTD--EGVELTAKHHIR--S 46 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH-------------------------------hheEEeeeCC--CCHHHHHHcCCc--e
Confidence 5689999999999888876433 1347888988 788999999998 9
Q ss_pred CCeEEEEecCcCceeccCCCCCCCHHHHHH
Q psy7938 117 VPSLRLIRLEEDMAKYKPATPEISVDTVRS 146 (305)
Q Consensus 117 ~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~ 146 (305)
+||++ .|+...++.+. +.+..+|++
T Consensus 47 ~PT~~---~g~~~~~~~G~--~~~~~~l~~ 71 (75)
T PHA02125 47 LPTLV---NTSTLDRFTGV--PRNVAELKE 71 (75)
T ss_pred eCeEE---CCEEEEEEeCC--CCcHHHHHH
Confidence 99998 34333455321 334445544
No 149
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.98 E-value=4.4e-09 Score=80.53 Aligned_cols=91 Identities=20% Similarity=0.337 Sum_probs=66.4
Q ss_pred EecccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCC---------------------c
Q psy7938 176 VLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDAT---------------------V 234 (305)
Q Consensus 176 ~l~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~---------------------~ 234 (305)
.+++..+..... .+++++|.||++||++|+.+.|.+.++++.+ .+..+.+|-+ .
T Consensus 7 ~~~g~~~~~~~~-~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (123)
T cd03011 7 TLDGEQFDLESL-SGKPVLVYFWATWCPVCRFTSPTVNQLAADY----PVVSVALRSGDDGAVARFMQKKGYGFPVINDP 81 (123)
T ss_pred cCCCCEeeHHHh-CCCEEEEEEECCcChhhhhhChHHHHHHhhC----CEEEEEccCCCHHHHHHHHHHcCCCccEEECC
Confidence 344444444332 3589999999999999999999999998775 2333323321 1
Q ss_pred c-c-cccCCcccccEEEEEeCCCceEEeeeCCCCHHHHHH
Q psy7938 235 N-E-LEHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSN 272 (305)
Q Consensus 235 ~-~-~~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~~~~l~~ 272 (305)
+ . .+.++|.++|+++++++++ ....+.|..+.+.|.+
T Consensus 82 ~~~~~~~~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~ 120 (123)
T cd03011 82 DGVISARWGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRL 120 (123)
T ss_pred CcHHHHhCCCCcccEEEEEcCCC-eEEEEeccCCHHHHHh
Confidence 1 1 2789999999999999887 6888999989888754
No 150
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.97 E-value=2.3e-09 Score=83.19 Aligned_cols=68 Identities=28% Similarity=0.486 Sum_probs=53.2
Q ss_pred CCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCC-CceEEEEEeCCcc-------------------------cc-ccCC
Q psy7938 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADR-DDITIAKIDATVN-------------------------EL-EHTK 241 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~id~~~~-------------------------~~-~~~~ 241 (305)
.+++++|+||++||++|+.+.|.+.++.+.++.. .++.++.++.+.+ .. +.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 4689999999999999999999999999988643 2454444444322 11 5789
Q ss_pred cccccEEEEEeCCCc
Q psy7938 242 ITSFPTLKLYAKDDN 256 (305)
Q Consensus 242 i~~~Ptl~~f~~g~~ 256 (305)
|.++|++++++++++
T Consensus 97 v~~~P~~~lid~~G~ 111 (131)
T cd03009 97 IEGIPTLIILDADGE 111 (131)
T ss_pred CCCCCEEEEECCCCC
Confidence 999999999997776
No 151
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.96 E-value=1.2e-08 Score=104.33 Aligned_cols=88 Identities=22% Similarity=0.456 Sum_probs=71.9
Q ss_pred CCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeC---Cc------------------------c--cccc
Q psy7938 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDA---TV------------------------N--ELEH 239 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~---~~------------------------~--~~~~ 239 (305)
.+++++|+|||+||++|+...|.++++.+++++ .++.++.|.. +. + ....
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~-~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~ 497 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKD-QPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRE 497 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCC-CCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHh
Confidence 478999999999999999999999999999974 3577766632 11 0 0157
Q ss_pred CCcccccEEEEEeCCCceEEeeeCCCCHHHHHHHHHhc
Q psy7938 240 TKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVESG 277 (305)
Q Consensus 240 ~~i~~~Ptl~~f~~g~~~~~~~~g~~~~~~l~~fi~~~ 277 (305)
|+|.++|++++++++++...++.|....+.|.++|.+.
T Consensus 498 ~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 498 LGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAA 535 (1057)
T ss_pred cCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHH
Confidence 89999999999977666677899999999999999876
No 152
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.95 E-value=1.1e-08 Score=77.44 Aligned_cols=89 Identities=13% Similarity=0.147 Sum_probs=72.7
Q ss_pred hcCCCcEEEEEECCCChhhhhHHH-HH--HHHHHHhCCCCceEEEEEeCCcccc----ccCCcccccEEEEEeC-CCceE
Q psy7938 187 FDKSKHVLVEFYAPWCGHCKQLAP-IY--DKLGEKFADRDDITIAKIDATVNEL----EHTKITSFPTLKLYAK-DDNRV 258 (305)
Q Consensus 187 ~~~~~~~lv~f~~~~C~~C~~~~~-~~--~~la~~~~~~~~v~~~~id~~~~~~----~~~~i~~~Ptl~~f~~-g~~~~ 258 (305)
...++.++|+|+++||.+|+.+.. .| .++.+.+. .++++..+|.+..+. ..+++.++|+++++.. +++..
T Consensus 14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~--~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l 91 (114)
T cd02958 14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIR--ENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVL 91 (114)
T ss_pred HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHH--hCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEe
Confidence 456899999999999999999965 34 45666663 478889999876443 7889999999999987 66668
Q ss_pred EeeeCCCCHHHHHHHHHhc
Q psy7938 259 IDYNGERVLEALSNFVESG 277 (305)
Q Consensus 259 ~~~~g~~~~~~l~~fi~~~ 277 (305)
.++.|..+.+.+.+-|++.
T Consensus 92 ~~~~G~~~~~~f~~~L~~~ 110 (114)
T cd02958 92 KVWSGNITPEDLLSQLIEF 110 (114)
T ss_pred EEEcCCCCHHHHHHHHHHH
Confidence 8899999999999888764
No 153
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.94 E-value=5.9e-09 Score=78.08 Aligned_cols=73 Identities=25% Similarity=0.515 Sum_probs=61.3
Q ss_pred CCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcc-----------------------c-c-ccCCccc
Q psy7938 190 SKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVN-----------------------E-L-EHTKITS 244 (305)
Q Consensus 190 ~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~-----------------------~-~-~~~~i~~ 244 (305)
+++++|.||++||++|+...+.+.++...+. ..++.++.|+.+.+ . . +.|++.+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYK-DDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhC-CCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 7899999999999999999999999999986 35688888888774 2 2 7889999
Q ss_pred ccEEEEEeCCCceEEeeeC
Q psy7938 245 FPTLKLYAKDDNRVIDYNG 263 (305)
Q Consensus 245 ~Ptl~~f~~g~~~~~~~~g 263 (305)
+|+++++.++++....+.|
T Consensus 98 ~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEEECCCCcEEEEecC
Confidence 9999999887765666654
No 154
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.91 E-value=9e-09 Score=78.69 Aligned_cols=75 Identities=12% Similarity=0.179 Sum_probs=54.7
Q ss_pred hcCCCcEEEEEECCCChhhhhHHHHH---HHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEEEeCCCceEEee
Q psy7938 187 FDKSKHVLVEFYAPWCGHCKQLAPIY---DKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLYAKDDNRVIDY 261 (305)
Q Consensus 187 ~~~~~~~lv~f~~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f~~g~~~~~~~ 261 (305)
...+|+++|.|+++||++|+.|...+ .++.+.++ .+++.+.++.+..+. ...+ .++||+++++++++.+.+.
T Consensus 20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~--~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~vi~~i 96 (130)
T cd02960 20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ--EDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTVRADI 96 (130)
T ss_pred HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH--hCeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCCcccc
Confidence 56789999999999999999998765 34555553 367777777654332 2233 6899999998887766666
Q ss_pred eCC
Q psy7938 262 NGE 264 (305)
Q Consensus 262 ~g~ 264 (305)
.|.
T Consensus 97 ~Gy 99 (130)
T cd02960 97 TGR 99 (130)
T ss_pred ccc
Confidence 663
No 155
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.89 E-value=2.8e-08 Score=76.05 Aligned_cols=106 Identities=14% Similarity=0.120 Sum_probs=85.0
Q ss_pred EEecccChhHHHhcCCCcEEEEEECC--CChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEE
Q psy7938 175 KVLVASNFDEIAFDKSKHVLVEFYAP--WCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKL 250 (305)
Q Consensus 175 ~~l~~~~f~~~v~~~~~~~lv~f~~~--~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~ 250 (305)
..++..+++.++ ......+++|-.+ -++.+..+.-.+.+++++|.+ .++.++++|.+.+.. .+|+|.++||+++
T Consensus 20 ~~~~~~~~~~~~-~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~-~~v~~akVDiD~~~~LA~~fgV~siPTLl~ 97 (132)
T PRK11509 20 TPVSESRLDDWL-TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD-YTWQVAIADLEQSEAIGDRFGVFRFPATLV 97 (132)
T ss_pred CccccccHHHHH-hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcC-CceEEEEEECCCCHHHHHHcCCccCCEEEE
Confidence 345557888887 3445555555543 367778888899999999952 459999999999886 8999999999999
Q ss_pred EeCCCceEEeeeCCCCHHHHHHHHHhcCCCCCC
Q psy7938 251 YAKDDNRVIDYNGERVLEALSNFVESGGKEGGL 283 (305)
Q Consensus 251 f~~g~~~~~~~~g~~~~~~l~~fi~~~~~~~~~ 283 (305)
|++|+. ...+.|..+.+.+.+||.+....+..
T Consensus 98 FkdGk~-v~~i~G~~~k~~l~~~I~~~L~~~~~ 129 (132)
T PRK11509 98 FTGGNY-RGVLNGIHPWAELINLMRGLVEPQQE 129 (132)
T ss_pred EECCEE-EEEEeCcCCHHHHHHHHHHHhcCcCc
Confidence 999976 88899999999999999988765543
No 156
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.88 E-value=1.4e-10 Score=88.18 Aligned_cols=96 Identities=11% Similarity=0.049 Sum_probs=57.5
Q ss_pred hHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHc
Q psy7938 31 DTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFF 110 (305)
Q Consensus 31 ~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~ 110 (305)
.+.+++++.|||+||++|+.+.|.+.+..... .. ...|+.||.+... ..+...|
T Consensus 17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~-----------------------~~--~~~fv~v~vd~~~-~~~~~~~ 70 (117)
T cd02959 17 DSGKPLMLLIHKTWCGACKALKPKFAESKEIS-----------------------EL--SHNFVMVNLEDDE-EPKDEEF 70 (117)
T ss_pred HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHH-----------------------hh--cCcEEEEEecCCC-Cchhhhc
Confidence 44568999999999999999988776652221 11 2234445554212 2345788
Q ss_pred CCCCCCCCeEEEEe-cCcCceeccCCCCCCCHHHHHHHHHHHH
Q psy7938 111 GMSKDEVPSLRLIR-LEEDMAKYKPATPEISVDTVRSFVTEFL 152 (305)
Q Consensus 111 ~I~~~~~Ptl~~~~-~~~~~~~~~~~~~~~~~~~l~~fv~~~~ 152 (305)
++.+.++||+++|+ .|+....+....|..+.+.+.+++....
T Consensus 71 ~~~g~~vPt~~f~~~~Gk~~~~~~~~~~~~~~~~f~~~~~~~~ 113 (117)
T cd02959 71 SPDGGYIPRILFLDPSGDVHPEIINKKGNPNYKYFYSSAAQVT 113 (117)
T ss_pred ccCCCccceEEEECCCCCCchhhccCCCCccccccCCCHHHHH
Confidence 98733499999998 4444333322224455555555555443
No 157
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.88 E-value=5.2e-09 Score=71.14 Aligned_cols=54 Identities=19% Similarity=0.324 Sum_probs=47.0
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEE
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKL 250 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~ 250 (305)
++.|+++||++|+.+.+.+++++... +++.+..+|.+.+.. .++++.++||+++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~---~~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALN---PNISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhC---CceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 67899999999999999999998765 468899999887654 8999999999976
No 158
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.87 E-value=1.9e-08 Score=96.79 Aligned_cols=165 Identities=16% Similarity=0.198 Sum_probs=116.0
Q ss_pred hhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCCCCCCCeEEEEe-cCcC-ceeccCCCCCCCHHHHHHHHHHHHcCc
Q psy7938 78 RSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIR-LEED-MAKYKPATPEISVDTVRSFVTEFLAGN 155 (305)
Q Consensus 78 ~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~-~~~~-~~~~~~~~~~~~~~~l~~fv~~~~~~~ 155 (305)
..++.+..+..++|.+...|.. +..+++++|||. ..|++.+++ .++. ..+|. |--.-.++..|+...+.-.
T Consensus 385 ~~~l~e~~~~s~~i~~~~~~~~--~~~~~~~~~~v~--~~P~~~i~~~~~~~~~i~f~---g~P~G~Ef~s~i~~i~~~~ 457 (555)
T TIGR03143 385 QSFLGEFASLSEKLNSEAVNRG--EEPESETLPKIT--KLPTVALLDDDGNYTGLKFH---GVPSGHELNSFILALYNAA 457 (555)
T ss_pred HHHHHHHHhcCCcEEEEEeccc--cchhhHhhcCCC--cCCEEEEEeCCCcccceEEE---ecCccHhHHHHHHHHHHhc
Confidence 3444444566688999888887 668899999997 889999996 3332 24553 3344467888888876421
Q ss_pred ccccccCCCCCCccccCCcEEecccChhHHHhcCCCcE-EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCc
Q psy7938 156 LKQHLLSQPLPEDWDKNAVKVLVASNFDEIAFDKSKHV-LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATV 234 (305)
Q Consensus 156 ~~~~~~s~~~p~~~~~~~v~~l~~~~f~~~v~~~~~~~-lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~ 234 (305)
- .-..|+.+..+ .+..-++++ +-.|.+++|++|......+++++.... ++..--+|...
T Consensus 458 ~----------------~~~~l~~~~~~-~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~---~i~~~~i~~~~ 517 (555)
T TIGR03143 458 G----------------PGQPLGEELLE-KIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP---NVEAEMIDVSH 517 (555)
T ss_pred C----------------CCCCCCHHHHH-HHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC---CceEEEEECcc
Confidence 1 11122223333 333445565 556689999999999999999988863 67777778777
Q ss_pred ccc--ccCCcccccEEEEEeCCCceEEeeeCCCCHHHHHHHH
Q psy7938 235 NEL--EHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFV 274 (305)
Q Consensus 235 ~~~--~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~~~~l~~fi 274 (305)
... .+|+|.++|++++ +| + ..+.|..+.+++..||
T Consensus 518 ~~~~~~~~~v~~vP~~~i--~~-~--~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 518 FPDLKDEYGIMSVPAIVV--DD-Q--QVYFGKKTIEEMLELI 554 (555)
T ss_pred cHHHHHhCCceecCEEEE--CC-E--EEEeeCCCHHHHHHhh
Confidence 665 6999999999998 33 2 4477988999999886
No 159
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.85 E-value=2.7e-08 Score=80.48 Aligned_cols=81 Identities=14% Similarity=0.201 Sum_probs=62.8
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc--------------c-ccCCc--ccccEEEEEeCCCc
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE--------------L-EHTKI--TSFPTLKLYAKDDN 256 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~--------------~-~~~~i--~~~Ptl~~f~~g~~ 256 (305)
+|.||++||++|++..|.+++++++++ +.+..|+.+... . ..|++ .++|+.++++++++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g----~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~ 148 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG----FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL 148 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC----CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc
Confidence 778999999999999999999999983 444444433221 1 45674 69999999998887
Q ss_pred eE-EeeeCCCCHHHHHHHHHhcC
Q psy7938 257 RV-IDYNGERVLEALSNFVESGG 278 (305)
Q Consensus 257 ~~-~~~~g~~~~~~l~~fi~~~~ 278 (305)
.. ..+.|..+.+.|.+.|.+..
T Consensus 149 i~~~~~~G~~~~~~L~~~I~~ll 171 (181)
T PRK13728 149 EALPLLQGATDAAGFMARMDTVL 171 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHHHH
Confidence 53 47999999999988887654
No 160
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.83 E-value=1.3e-08 Score=76.90 Aligned_cols=71 Identities=23% Similarity=0.361 Sum_probs=49.4
Q ss_pred CCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEE-eCCccc---------------------cccCCccccc
Q psy7938 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKI-DATVNE---------------------LEHTKITSFP 246 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~i-d~~~~~---------------------~~~~~i~~~P 246 (305)
.+++++|.||++||++|+.+.|.++++++.+.+ ++.++.+ |.+... .+.|++.++|
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P 97 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD--WLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLP 97 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC--CcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcC
Confidence 378999999999999999999999999888754 3444333 222111 0345677788
Q ss_pred EEEEEeCCCceEEeeeC
Q psy7938 247 TLKLYAKDDNRVIDYNG 263 (305)
Q Consensus 247 tl~~f~~g~~~~~~~~g 263 (305)
+.+++++.++ +.|.|
T Consensus 98 ~~~vid~~G~--v~~~~ 112 (114)
T cd02967 98 YAVLLDEAGV--IAAKG 112 (114)
T ss_pred eEEEECCCCe--EEecc
Confidence 8888876654 44544
No 161
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.82 E-value=6.2e-09 Score=96.78 Aligned_cols=103 Identities=20% Similarity=0.334 Sum_probs=80.1
Q ss_pred EEeccc-ChhHHH-hcCCCcEEEEEECCCChhhhhHHHHHH-HHHHHhCCCCceEEEEEeCCcccc------ccCCcccc
Q psy7938 175 KVLVAS-NFDEIA-FDKSKHVLVEFYAPWCGHCKQLAPIYD-KLGEKFADRDDITIAKIDATVNEL------EHTKITSF 245 (305)
Q Consensus 175 ~~l~~~-~f~~~v-~~~~~~~lv~f~~~~C~~C~~~~~~~~-~la~~~~~~~~v~~~~id~~~~~~------~~~~i~~~ 245 (305)
..++.. ..++.+ .+.+++|+++|||+||-.||.+.+..- +.....+ -.++++.++|.+.|+. +++++-+.
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~-~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~ 535 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQA-LQDVVLLQADVTANDPAITALLKRLGVFGV 535 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHh-cCCeEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence 444443 556555 334469999999999999999988664 3333332 3589999999998874 78999999
Q ss_pred cEEEEEeCCCceEEeeeCCCCHHHHHHHHHhcC
Q psy7938 246 PTLKLYAKDDNRVIDYNGERVLEALSNFVESGG 278 (305)
Q Consensus 246 Ptl~~f~~g~~~~~~~~g~~~~~~l~~fi~~~~ 278 (305)
|++++|+.+++++....|..+.+.+.+++++..
T Consensus 536 P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 536 PTYLFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred CEEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 999999977666667999999999999998754
No 162
>smart00594 UAS UAS domain.
Probab=98.78 E-value=7.3e-08 Score=73.78 Aligned_cols=93 Identities=13% Similarity=0.164 Sum_probs=72.0
Q ss_pred cChhHHH---hcCCCcEEEEEECCCChhhhhHHHHH---HHHHHHhCCCCceEEEEEeCCcccc----ccCCcccccEEE
Q psy7938 180 SNFDEIA---FDKSKHVLVEFYAPWCGHCKQLAPIY---DKLGEKFADRDDITIAKIDATVNEL----EHTKITSFPTLK 249 (305)
Q Consensus 180 ~~f~~~v---~~~~~~~lv~f~~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~id~~~~~~----~~~~i~~~Ptl~ 249 (305)
.+|++.+ ...+|.++|+|+++||+.|..+.... .++.+.+. .++++..+|.+..+. ..++++++|+++
T Consensus 14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~--~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~ 91 (122)
T smart00594 14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIR--ENFIFWQVDVDTSEGQRVSQFYKLDSFPYVA 91 (122)
T ss_pred CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHH--cCEEEEEecCCChhHHHHHHhcCcCCCCEEE
Confidence 3555544 45678999999999999999986543 44556663 378998899887664 789999999999
Q ss_pred EEeCCC--c---eEEeeeCCCCHHHHHHHH
Q psy7938 250 LYAKDD--N---RVIDYNGERVLEALSNFV 274 (305)
Q Consensus 250 ~f~~g~--~---~~~~~~g~~~~~~l~~fi 274 (305)
++...+ . ...++.|..+.+.|..++
T Consensus 92 ~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 92 IVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 997654 1 255789999999998876
No 163
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.78 E-value=4.6e-09 Score=73.35 Aligned_cols=72 Identities=8% Similarity=0.104 Sum_probs=50.9
Q ss_pred hhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCCCCCC
Q psy7938 38 TEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMSKDEV 117 (305)
Q Consensus 38 v~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~~~~~ 117 (305)
++||++||++|+.+.|.+.++ ..++..++.|+.|| + .+.+.+|||. +.
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~-------------------------~~e~~~~~~~~~v~-~----~~~a~~~~v~--~v 50 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKA-------------------------VEELGIDAEFEKVT-D----MNEILEAGVT--AT 50 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHH-------------------------HHHcCCCeEEEEeC-C----HHHHHHcCCC--cC
Confidence 579999999999998888887 34445678888888 2 2237889998 99
Q ss_pred CeEEEEecCcCceeccCCCCC-CCHHHHHHHH
Q psy7938 118 PSLRLIRLEEDMAKYKPATPE-ISVDTVRSFV 148 (305)
Q Consensus 118 Ptl~~~~~~~~~~~~~~~~~~-~~~~~l~~fv 148 (305)
||+++ +|+.. +. |. .+.+++.+++
T Consensus 51 Pti~i--~G~~~--~~---G~~~~~~~l~~~l 75 (76)
T TIGR00412 51 PGVAV--DGELV--IM---GKIPSKEEIKEIL 75 (76)
T ss_pred CEEEE--CCEEE--EE---eccCCHHHHHHHh
Confidence 99998 44332 32 32 3446666654
No 164
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.76 E-value=1e-08 Score=72.74 Aligned_cols=65 Identities=25% Similarity=0.475 Sum_probs=50.8
Q ss_pred hcCCCcEEEEEECCCChhhhhHHHHH---HHHHHHhCCCCceEEEEEeCCcccc-ccCCcccccEEEEEeC
Q psy7938 187 FDKSKHVLVEFYAPWCGHCKQLAPIY---DKLGEKFADRDDITIAKIDATVNEL-EHTKITSFPTLKLYAK 253 (305)
Q Consensus 187 ~~~~~~~lv~f~~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~id~~~~~~-~~~~i~~~Ptl~~f~~ 253 (305)
...+++++|.|+++||++|+.+...+ ..+...+. .+++++++|.+..+. ..+...++|+++++++
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~--~~fv~v~vd~~~~~~~~~~~~~~~P~~~~ldp 82 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN--KNFVLVKVDVDDEDPNAQFDRQGYPTFFFLDP 82 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH--HCSEEEEEETTTHHHHHHHHHCSSSEEEEEET
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH--CCEEEEEEEcCCCChhHHhCCccCCEEEEeCC
Confidence 46789999999999999999998877 45555453 479999999977664 3333367999999874
No 165
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.74 E-value=6.2e-08 Score=69.67 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=58.2
Q ss_pred CCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEEEeCCCceEEeeeCCCCH
Q psy7938 190 SKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLYAKDDNRVIDYNGERVL 267 (305)
Q Consensus 190 ~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~~ 267 (305)
+..-+..|+++||++|....+.+++++..+ +++.+..+|.+.... .+|+|.++||+++ +| + ..+.|..+.
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~---~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG-~--~~~~G~~~~ 83 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLN---PNIEHEMIDGALFQDEVEERGIMSVPAIFL--NG-E--LFGFGRMTL 83 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHC---CCceEEEEEhHhCHHHHHHcCCccCCEEEE--CC-E--EEEeCCCCH
Confidence 334688899999999999999999999876 368888888877653 8999999999975 44 3 344686666
Q ss_pred HHHH
Q psy7938 268 EALS 271 (305)
Q Consensus 268 ~~l~ 271 (305)
+.+.
T Consensus 84 ~e~~ 87 (89)
T cd03026 84 EEIL 87 (89)
T ss_pred HHHh
Confidence 6543
No 166
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.73 E-value=6.1e-09 Score=99.91 Aligned_cols=92 Identities=7% Similarity=0.136 Sum_probs=64.3
Q ss_pred HHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCc--hhHHHHHHHcC
Q psy7938 34 RSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDE--EDHQKILEFFG 111 (305)
Q Consensus 34 ~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~~~l~~~~~ 111 (305)
++++++|||+||++|+.+.+......+ + ...+ .++.++++|.++ +++.+++++|+
T Consensus 475 K~VlVdF~A~WC~~Ck~~e~~~~~~~~-v---------------------~~~l-~~~~~v~vDvt~~~~~~~~l~~~~~ 531 (571)
T PRK00293 475 KPVMLDLYADWCVACKEFEKYTFSDPQ-V---------------------QQAL-ADTVLLQADVTANNAEDVALLKHYN 531 (571)
T ss_pred CcEEEEEECCcCHhHHHHHHHhcCCHH-H---------------------HHHh-cCCEEEEEECCCCChhhHHHHHHcC
Confidence 578999999999999987654221111 1 1122 247899999874 24678999999
Q ss_pred CCCCCCCeEEEEec-CcCceeccCCCCCCCHHHHHHHHHHH
Q psy7938 112 MSKDEVPSLRLIRL-EEDMAKYKPATPEISVDTVRSFVTEF 151 (305)
Q Consensus 112 I~~~~~Ptl~~~~~-~~~~~~~~~~~~~~~~~~l~~fv~~~ 151 (305)
|. ++||+++|+. |+....... .|..+.+++.+++++.
T Consensus 532 v~--g~Pt~~~~~~~G~~i~~~r~-~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 532 VL--GLPTILFFDAQGQEIPDARV-TGFMDAAAFAAHLRQL 569 (571)
T ss_pred CC--CCCEEEEECCCCCCcccccc-cCCCCHHHHHHHHHHh
Confidence 98 9999999985 433212222 3678999999998875
No 167
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.72 E-value=3.2e-09 Score=72.18 Aligned_cols=55 Identities=11% Similarity=0.173 Sum_probs=44.8
Q ss_pred hhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCCCCCC
Q psy7938 38 TEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMSKDEV 117 (305)
Q Consensus 38 v~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~~~~~ 117 (305)
+-|+++||++|+.+.+.+.+++. . .+++.|..+|.+ +++++++++|+. ++
T Consensus 4 ~~f~~~~C~~C~~~~~~l~~l~~-------------------------~-~~~i~~~~id~~--~~~~l~~~~~i~--~v 53 (67)
T cd02973 4 EVFVSPTCPYCPDAVQAANRIAA-------------------------L-NPNISAEMIDAA--EFPDLADEYGVM--SV 53 (67)
T ss_pred EEEECCCCCCcHHHHHHHHHHHH-------------------------h-CCceEEEEEEcc--cCHhHHHHcCCc--cc
Confidence 45899999999988877766621 1 256999999999 778899999998 99
Q ss_pred CeEEE
Q psy7938 118 PSLRL 122 (305)
Q Consensus 118 Ptl~~ 122 (305)
||+++
T Consensus 54 Pti~i 58 (67)
T cd02973 54 PAIVI 58 (67)
T ss_pred CEEEE
Confidence 99865
No 168
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.72 E-value=8.2e-08 Score=73.92 Aligned_cols=75 Identities=23% Similarity=0.375 Sum_probs=58.6
Q ss_pred CCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCc-------cc----------------------ccc
Q psy7938 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATV-------NE----------------------LEH 239 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~-------~~----------------------~~~ 239 (305)
.+++++|.||++||++|....|.++++.+.+++ .++.++.|+... .. ...
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~-~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~ 100 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD-DGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRA 100 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc-CCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHH
Confidence 468999999999999999999999999999975 467777665421 00 134
Q ss_pred CCcccccEEEEEeCCCceEEeeeCC
Q psy7938 240 TKITSFPTLKLYAKDDNRVIDYNGE 264 (305)
Q Consensus 240 ~~i~~~Ptl~~f~~g~~~~~~~~g~ 264 (305)
|++.++|+.++++++++....+.|.
T Consensus 101 ~~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 101 YGNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred hCCCcCCeEEEECCCCcEEEEEecC
Confidence 7889999999998877766666664
No 169
>KOG0913|consensus
Probab=98.71 E-value=8.6e-09 Score=84.74 Aligned_cols=106 Identities=25% Similarity=0.415 Sum_probs=92.0
Q ss_pred CcEEecccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEE
Q psy7938 173 AVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKL 250 (305)
Q Consensus 173 ~v~~l~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~ 250 (305)
.++.++..++..++ ...+++.|+++||+.|+...+.|+..|.--.+ -.+.++.+|.+.|.. -+|-++..|||+-
T Consensus 25 ~~~~~~eenw~~~l---~gewmi~~~ap~~psc~~~~~~~~~~a~~s~d-L~v~va~VDvt~npgLsGRF~vtaLptIYH 100 (248)
T KOG0913|consen 25 KLTRIDEENWKELL---TGEWMIEFGAPWCPSCSDLIPHLENFATVSLD-LGVKVAKVDVTTNPGLSGRFLVTALPTIYH 100 (248)
T ss_pred eeEEecccchhhhh---chHHHHHhcCCCCccccchHHHHhccCCccCC-CceeEEEEEEEeccccceeeEEEecceEEE
Confidence 58899999999987 67899999999999999999999999876544 579999999999987 6899999999999
Q ss_pred EeCCCceEEeeeCCCCHHHHHHHHHhcCCCCCCC
Q psy7938 251 YAKDDNRVIDYNGERVLEALSNFVESGGKEGGLP 284 (305)
Q Consensus 251 f~~g~~~~~~~~g~~~~~~l~~fi~~~~~~~~~~ 284 (305)
-+.| ..-+|.|.++..+++.|+....-....+
T Consensus 101 vkDG--eFrrysgaRdk~dfisf~~~r~w~~i~p 132 (248)
T KOG0913|consen 101 VKDG--EFRRYSGARDKNDFISFEEHREWQSIDP 132 (248)
T ss_pred eecc--ccccccCcccchhHHHHHHhhhhhccCC
Confidence 8888 4688999999999999999766544444
No 170
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.70 E-value=9.7e-09 Score=96.18 Aligned_cols=126 Identities=13% Similarity=0.065 Sum_probs=78.0
Q ss_pred CCCeEEEEeeccCceecCCCCCCCChhHHHHHhhhhhcCcccccccccceeeeecccccc--c--C-CCC----Ccchhh
Q psy7938 5 EVPSLRLIRLEEDMAKYKPATPEINVDTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAK--Y--K-PAS----PEINVD 75 (305)
Q Consensus 5 ~~p~i~l~~~~~~~~~~~~~~~~~~~~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~--~--~-~~~----~~~~~~ 75 (305)
.+|.+.+...+...+.+. .-+++++.|||+||++|+...|.+.++....+. + . -+. .+.+..
T Consensus 37 ~lP~f~l~D~dG~~v~ls---------kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~ 107 (521)
T PRK14018 37 TLSTLKTADNRPASVYLK---------KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDG 107 (521)
T ss_pred CCCCeEeecCCCceeecc---------CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHH
Confidence 467777766666555542 346789999999999999998888887554420 0 0 000 011111
Q ss_pred hhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCCCCCCCeEEEEecCcC-ceeccCCCCCCCHHHHHHHHHHH
Q psy7938 76 TVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEED-MAKYKPATPEISVDTVRSFVTEF 151 (305)
Q Consensus 76 ~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~-~~~~~~~~~~~~~~~l~~fv~~~ 151 (305)
.+..++++. ...-..|++| ....+++.|+|. ++||+++++.++. +..+ .|.++.++|..+++..
T Consensus 108 ~~~~~~~~~-----~y~~~pV~~D--~~~~lak~fgV~--giPTt~IIDkdGkIV~~~---~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 108 DFQKWYAGL-----DYPKLPVLTD--NGGTLAQSLNIS--VYPSWAIIGKDGDVQRIV---KGSISEAQALALIRNP 172 (521)
T ss_pred HHHHHHHhC-----CCcccceecc--ccHHHHHHcCCC--CcCeEEEEcCCCeEEEEE---eCCCCHHHHHHHHHHh
Confidence 122211111 1111345556 567899999998 9999988865433 3444 3778899999999943
No 171
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.68 E-value=1.9e-08 Score=87.58 Aligned_cols=90 Identities=11% Similarity=0.026 Sum_probs=62.7
Q ss_pred HHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCch-------hHHHHH
Q psy7938 35 SFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEE-------DHQKIL 107 (305)
Q Consensus 35 ~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-------~~~~l~ 107 (305)
..|+.||++||++|+.+.|.+.++ ..+++-.|..+.+|.+.. .+..++
T Consensus 168 ~~Lv~F~AswCp~C~~~~P~L~~l-------------------------a~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la 222 (271)
T TIGR02740 168 SGLFFFFKSDCPYCHQQAPILQAF-------------------------EDRYGIEVLPVSVDGGPLPGFPNARPDAGQA 222 (271)
T ss_pred eEEEEEECCCCccHHHHhHHHHHH-------------------------HHHcCcEEEEEeCCCCccccCCcccCCHHHH
Confidence 456679999999999999988888 333333344444444210 135689
Q ss_pred HHcCCCCCCCCeEEEEec-CcCceeccCCCCCCCHHHHHHHHHHHHc
Q psy7938 108 EFFGMSKDEVPSLRLIRL-EEDMAKYKPATPEISVDTVRSFVTEFLA 153 (305)
Q Consensus 108 ~~~~I~~~~~Ptl~~~~~-~~~~~~~~~~~~~~~~~~l~~fv~~~~~ 153 (305)
+++||. ++|++++++. ++.+... . .|..+.++|.+.+.....
T Consensus 223 ~~~gV~--~vPtl~Lv~~~~~~v~~v-~-~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 223 QQLKIR--TVPAVFLADPDPNQFTPI-G-FGVMSADELVDRILLAAH 265 (271)
T ss_pred HHcCCC--cCCeEEEEECCCCEEEEE-E-eCCCCHHHHHHHHHHHhc
Confidence 999998 9999999997 4432222 1 367899999999887753
No 172
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.67 E-value=1.9e-08 Score=79.87 Aligned_cols=85 Identities=9% Similarity=0.055 Sum_probs=54.1
Q ss_pred hhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchh----------HHHH
Q psy7938 37 VTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEED----------HQKI 106 (305)
Q Consensus 37 iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~----------~~~l 106 (305)
++.|||+||++|+...|.+.++ +++++ +.++.|+.+... ....
T Consensus 54 lvnFWAsWCppCr~e~P~L~~l-------------------------~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~ 106 (153)
T TIGR02738 54 LVFFYQSTCPYCHQFAPVLKRF-------------------------SQQFG--LPVYAFSLDGQGLTGFPDPLPATPEV 106 (153)
T ss_pred EEEEECCCChhHHHHHHHHHHH-------------------------HHHcC--CcEEEEEeCCCcccccccccCCchHH
Confidence 8899999999999998888877 23332 233333433111 1223
Q ss_pred -HHHc---CCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHH
Q psy7938 107 -LEFF---GMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEF 151 (305)
Q Consensus 107 -~~~~---~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~ 151 (305)
...+ ++. ++||..+++..+....... .|..+.+++.+.+.+.
T Consensus 107 ~~~~~~~~~v~--~iPTt~LID~~G~~i~~~~-~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 107 MQTFFPNPRPV--VTPATFLVNVNTRKAYPVL-QGAVDEAELANRMDEI 152 (153)
T ss_pred HHHHhccCCCC--CCCeEEEEeCCCCEEEEEe-ecccCHHHHHHHHHHh
Confidence 3445 776 9999999987543212111 3788888888877654
No 173
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.67 E-value=1.9e-07 Score=73.66 Aligned_cols=77 Identities=29% Similarity=0.546 Sum_probs=59.7
Q ss_pred CCCcEEEEEECC-CChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc-----------------------cccCCcc-
Q psy7938 189 KSKHVLVEFYAP-WCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE-----------------------LEHTKIT- 243 (305)
Q Consensus 189 ~~~~~lv~f~~~-~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~-----------------------~~~~~i~- 243 (305)
.+++++|.||++ ||++|+...|.+.++.+.++.. ++.++.+..+.+. .+.+++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK-GVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC-ceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 478999999999 9999999999999999887643 4555444433322 1567777
Q ss_pred --------cccEEEEEeCCCceEEeeeCCCC
Q psy7938 244 --------SFPTLKLYAKDDNRVIDYNGERV 266 (305)
Q Consensus 244 --------~~Ptl~~f~~g~~~~~~~~g~~~ 266 (305)
++|+++++.++++......|..+
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred ccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 99999999999887777777655
No 174
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.63 E-value=4.6e-07 Score=74.26 Aligned_cols=141 Identities=14% Similarity=0.285 Sum_probs=94.4
Q ss_pred CCCeEEEEee-ccCceecCCCCCCCChhHHHHHhhhhhcCccccccccc-ceeeeeccc-ccccCCCCCcchhhhhhhHH
Q psy7938 5 EVPSLRLIRL-EEDMAKYKPATPEINVDTVRSFVTEFLAGNLKHSKFKK-NLYIHLEED-MAKYKPASPEINVDTVRSFV 81 (305)
Q Consensus 5 ~~p~i~l~~~-~~~~~~~~~~~~~~~~~~~~~~iv~f~a~wc~~c~~~~-p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 81 (305)
..|+|.|||. ++....|.++ ..+.+++..||..+..|.++.-..-+ ..+...... .-.+.........+.+...+
T Consensus 40 ~~p~i~~~k~~~~~~~~y~~~--~~~~~~l~~fI~~~~~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 117 (184)
T PF13848_consen 40 KEPTIVVYKKFDEKPVVYDGD--KFTPEELKKFIKKNSFPLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKEL 117 (184)
T ss_dssp SSSEEEEEECTTTSEEEESSS--TTSHHHHHHHHHHHSSTSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHH
T ss_pred CCCcEEEeccCCCCceecccc--cCCHHHHHHHHHHhccccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHH
Confidence 3499999996 7778889433 37899999999999999888774211 001011100 11111111122233344433
Q ss_pred H-HHhhcCceEEEEEEeCCchhHHHHHHHcCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHH
Q psy7938 82 T-EFLAGNLKVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTE 150 (305)
Q Consensus 82 ~-~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~ 150 (305)
. -+.++++++.|+.+|++ ...++++.+|++...+|++++++.......|.. .+.++.++|.+|+.+
T Consensus 118 ~~~a~~~~~~~~f~~~d~~--~~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~-~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 118 QDIAKKFKGKINFVYVDAD--DFPRLLKYFGIDEDDLPALVIFDSNKGKYYYLP-EGEITPESIEKFLND 184 (184)
T ss_dssp HHHHHCTTTTSEEEEEETT--TTHHHHHHTTTTTSSSSEEEEEETTTSEEEE---SSCGCHHHHHHHHHH
T ss_pred HHHHHhcCCeEEEEEeehH--HhHHHHHHcCCCCccCCEEEEEECCCCcEEcCC-CCCCCHHHHHHHhcC
Confidence 3 34677889999999999 778899999998789999999996554233333 578999999999975
No 175
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.61 E-value=1.9e-08 Score=76.89 Aligned_cols=96 Identities=6% Similarity=0.058 Sum_probs=59.2
Q ss_pred ChhHHHHHhhhhhcCcccccccccc-eeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHH
Q psy7938 29 NVDTVRSFVTEFLAGNLKHSKFKKN-LYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKIL 107 (305)
Q Consensus 29 ~~~~~~~~iv~f~a~wc~~c~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~ 107 (305)
..++.+++++.|+|+||++|+.+.+ .+..- +.. ......+.++++|.+ ++++++
T Consensus 11 Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~-~V~----------------------~~l~~~fv~VkvD~~--~~~~~~ 65 (124)
T cd02955 11 ARREDKPIFLSIGYSTCHWCHVMEHESFEDE-EVA----------------------AILNENFVPIKVDRE--ERPDVD 65 (124)
T ss_pred HHHcCCeEEEEEccCCCHhHHHHHHHccCCH-HHH----------------------HHHhCCEEEEEEeCC--cCcHHH
Confidence 3466788999999999999998754 22221 111 111235778899988 555554
Q ss_pred H--------HcCCCCCCCCeEEEEecCcCce---eccCCCCCCCHHHHHHHHHHH
Q psy7938 108 E--------FFGMSKDEVPSLRLIRLEEDMA---KYKPATPEISVDTVRSFVTEF 151 (305)
Q Consensus 108 ~--------~~~I~~~~~Ptl~~~~~~~~~~---~~~~~~~~~~~~~l~~fv~~~ 151 (305)
+ .||+. ++|+++++++.+... .+.+.....+...+.++++..
T Consensus 66 ~~~~~~~~~~~~~~--G~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd02955 66 KIYMNAAQAMTGQG--GWPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKI 118 (124)
T ss_pred HHHHHHHHHhcCCC--CCCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence 4 35887 999999998764421 221111223445566666554
No 176
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.56 E-value=4.1e-08 Score=79.84 Aligned_cols=112 Identities=17% Similarity=0.280 Sum_probs=71.4
Q ss_pred CCCCeEEEEeeccCceecCCCCCCCChhHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHH
Q psy7938 4 DEVPSLRLIRLEEDMAKYKPATPEINVDTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTE 83 (305)
Q Consensus 4 ~~~p~i~l~~~~~~~~~~~~~~~~~~~~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (305)
...|.+.+...+.+.+.+. .+ ..+.+++.||++||++|+...+.+.++...+.
T Consensus 39 ~~~p~~~~~~~~g~~~~l~--~~-----~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~-------------------- 91 (173)
T PRK03147 39 KEAPNFVLTDLEGKKIELK--DL-----KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYK-------------------- 91 (173)
T ss_pred CCCCCcEeecCCCCEEeHH--Hc-----CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhh--------------------
Confidence 4466676666555544441 11 12568889999999999876655555522221
Q ss_pred HhhcCceEEEEEEeCCch--------------------hHHHHHHHcCCCCCCCCeEEEEecCcCce-eccCCCCCCCHH
Q psy7938 84 FLAGNLKVLFVTINTDEE--------------------DHQKILEFFGMSKDEVPSLRLIRLEEDMA-KYKPATPEISVD 142 (305)
Q Consensus 84 ~~~~~~~v~~~~vd~~~~--------------------~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~-~~~~~~~~~~~~ 142 (305)
. ..+.++.|+++.. ....+++.|||. ++|++.+++.++.+. .+ .|..+.+
T Consensus 92 --~--~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~--~~P~~~lid~~g~i~~~~---~g~~~~~ 162 (173)
T PRK03147 92 --E--KGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVG--PLPTTFLIDKDGKVVKVI---TGEMTEE 162 (173)
T ss_pred --c--CCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCC--CcCeEEEECCCCcEEEEE---eCCCCHH
Confidence 1 1244555554321 346788999998 999999998665433 33 3678889
Q ss_pred HHHHHHHHH
Q psy7938 143 TVRSFVTEF 151 (305)
Q Consensus 143 ~l~~fv~~~ 151 (305)
++.+++.+.
T Consensus 163 ~l~~~l~~~ 171 (173)
T PRK03147 163 QLEEYLEKI 171 (173)
T ss_pred HHHHHHHHh
Confidence 999988764
No 177
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.55 E-value=6.8e-07 Score=77.21 Aligned_cols=108 Identities=22% Similarity=0.323 Sum_probs=79.0
Q ss_pred CCcEEecc-cChhHHHhcC--CCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc-ccCCcccccE
Q psy7938 172 NAVKVLVA-SNFDEIAFDK--SKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL-EHTKITSFPT 247 (305)
Q Consensus 172 ~~v~~l~~-~~f~~~v~~~--~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~-~~~~i~~~Pt 247 (305)
+.|.+|+. +.|.+.+... +..|+|+||.+.++.|..|...|..||..|. .+.|++|..+...+ ..|.+..+||
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp---~vKFvkI~a~~~~~~~~f~~~~LPt 201 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP---EVKFVKIRASKCPASENFPDKNLPT 201 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T---TSEEEEEEECGCCTTTTS-TTC-SE
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC---ceEEEEEehhccCcccCCcccCCCE
Confidence 45888864 7888887443 3469999999999999999999999999994 79999999877655 7899999999
Q ss_pred EEEEeCCCceEEeeeC-------CCCHHHHHHHHHhcCCCCCC
Q psy7938 248 LKLYAKDDNRVIDYNG-------ERVLEALSNFVESGGKEGGL 283 (305)
Q Consensus 248 l~~f~~g~~~~~~~~g-------~~~~~~l~~fi~~~~~~~~~ 283 (305)
|++|++|.. ...+.| ..+...|..||.+++-.+..
T Consensus 202 llvYk~G~l-~~~~V~l~~~~g~df~~~dlE~~L~~~G~l~~k 243 (265)
T PF02114_consen 202 LLVYKNGDL-IGNFVGLTDLLGDDFFTEDLEAFLIEYGVLPEK 243 (265)
T ss_dssp EEEEETTEE-EEEECTGGGCT-TT--HHHHHHHHHTTTSSS--
T ss_pred EEEEECCEE-EEeEEehHHhcCCCCCHHHHHHHHHHcCCCCCc
Confidence 999998754 555544 45678999999988754443
No 178
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.52 E-value=1e-06 Score=74.85 Aligned_cols=89 Identities=19% Similarity=0.115 Sum_probs=69.1
Q ss_pred CCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCc-------c--cc-----ccCC-------------
Q psy7938 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATV-------N--EL-----EHTK------------- 241 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~-------~--~~-----~~~~------------- 241 (305)
.++.++|.||++||++|....|.+.++.+.+++. ++.++.|+++. . .. ++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~-Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G 176 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNG 176 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC-CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCc
Confidence 3689999999999999999999999999999753 57777777631 0 00 1111
Q ss_pred ---------------------cccccEEEEEeCCCceEEeeeCCCCHHHHHHHHHhcC
Q psy7938 242 ---------------------ITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVESGG 278 (305)
Q Consensus 242 ---------------------i~~~Ptl~~f~~g~~~~~~~~g~~~~~~l~~fi~~~~ 278 (305)
+...|+.++++++++...+|.|..+.+.|.+.|++..
T Consensus 177 ~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 177 PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred chhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 1235899999998888889999999999999887653
No 179
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.52 E-value=8.9e-07 Score=73.15 Aligned_cols=85 Identities=22% Similarity=0.364 Sum_probs=60.0
Q ss_pred CCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeC-------------C------cccc-ccCCcccccEE
Q psy7938 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDA-------------T------VNEL-EHTKITSFPTL 248 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~-------------~------~~~~-~~~~i~~~Ptl 248 (305)
.+++++|.||++||++|+...|.+.++.+.. ..++.++..|. + ..+. +.|++.++|+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~--~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE--ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc--CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 5689999999999999999999999988765 23455554220 0 0111 57889999999
Q ss_pred EEEeCCCceEEeeeCC-CCHHHHHHHHHhc
Q psy7938 249 KLYAKDDNRVIDYNGE-RVLEALSNFVESG 277 (305)
Q Consensus 249 ~~f~~g~~~~~~~~g~-~~~~~l~~fi~~~ 277 (305)
+++++++. +.+.|. .+.+.+.+.++..
T Consensus 151 ~lID~~G~--I~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 151 VLLDQDGK--IRAKGLTNTREHLESLLEAD 178 (189)
T ss_pred EEECCCCe--EEEccCCCCHHHHHHHHHHH
Confidence 99987766 444564 4556677776643
No 180
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.50 E-value=1.1e-06 Score=73.26 Aligned_cols=89 Identities=18% Similarity=0.184 Sum_probs=65.5
Q ss_pred CCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCc--------cc-c----ccCCc-------------
Q psy7938 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATV--------NE-L----EHTKI------------- 242 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~--------~~-~----~~~~i------------- 242 (305)
.+++++|.||++||++|+...|.+.++.+.+++ .++.++.|+++. .. . +++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~-~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~ 116 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNP-LGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGE 116 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhc-CceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCC
Confidence 478999999999999999999999999999975 357777787531 11 1 12211
Q ss_pred -----------------------cccc---EEEEEeCCCceEEeeeCCCCHHHHHHHHHhcC
Q psy7938 243 -----------------------TSFP---TLKLYAKDDNRVIDYNGERVLEALSNFVESGG 278 (305)
Q Consensus 243 -----------------------~~~P---tl~~f~~g~~~~~~~~g~~~~~~l~~fi~~~~ 278 (305)
..+| +.+++++++....++.|..+.+.|.+.|.+..
T Consensus 117 ~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll 178 (199)
T PTZ00056 117 NTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELL 178 (199)
T ss_pred ccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 1122 67788888876778888888888888877654
No 181
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.50 E-value=1.5e-06 Score=67.07 Aligned_cols=76 Identities=13% Similarity=0.103 Sum_probs=62.5
Q ss_pred HHHHHhhcCce-EEEEEEeCCchhHHHHHHHcCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHHHcCcccc
Q psy7938 80 FVTEFLAGNLK-VLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFLAGNLKQ 158 (305)
Q Consensus 80 ~~~~~~~~~~~-v~~~~vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~~~~~~~~ 158 (305)
+..-+++++++ +.|+.+|.+ ++..+.+.|||...++|++++++..+. +|....+..+.++|.+|+.+++.|++..
T Consensus 46 l~~vAk~~kgk~i~Fv~vd~~--~~~~~~~~fgl~~~~~P~v~i~~~~~~--KY~~~~~~~t~e~i~~Fv~~~l~Gkl~~ 121 (130)
T cd02983 46 LKSVAEKFKKKPWGWLWTEAG--AQLDLEEALNIGGFGYPAMVAINFRKM--KFATLKGSFSEDGINEFLRELSYGRGPT 121 (130)
T ss_pred HHHHHHHhcCCcEEEEEEeCc--ccHHHHHHcCCCccCCCEEEEEecccC--ccccccCccCHHHHHHHHHHHHcCCccc
Confidence 34445777899 999999999 777799999997568999999998532 7874458899999999999999998744
Q ss_pred c
Q psy7938 159 H 159 (305)
Q Consensus 159 ~ 159 (305)
.
T Consensus 122 ~ 122 (130)
T cd02983 122 L 122 (130)
T ss_pred c
Confidence 3
No 182
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.49 E-value=5.8e-09 Score=78.52 Aligned_cols=89 Identities=9% Similarity=0.097 Sum_probs=53.1
Q ss_pred HHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchh----------
Q psy7938 33 VRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEED---------- 102 (305)
Q Consensus 33 ~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---------- 102 (305)
.++.++.|+++||++|+.+.+.+....... ...+..+.++.++.+...
T Consensus 5 ~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (112)
T PF13098_consen 5 GKPIVVVFTDPWCPYCKKLEKELFPDNDVA----------------------RYLKDDFQVIFVNIDDSRDESEAVLDFD 62 (112)
T ss_dssp SSEEEEEEE-TT-HHHHHHHHHHHHHHHHH----------------------CEEHCECEEEECESHSHHHHHHHHHSHT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHH----------------------HHhhcCeEEEEEecCCcccccccccccc
Confidence 356678899999999987765444321111 111234566666665322
Q ss_pred --------HHHHHHHcCCCCCCCCeEEEEec-CcCceeccCCCCCCCHHHHHHHH
Q psy7938 103 --------HQKILEFFGMSKDEVPSLRLIRL-EEDMAKYKPATPEISVDTVRSFV 148 (305)
Q Consensus 103 --------~~~l~~~~~I~~~~~Ptl~~~~~-~~~~~~~~~~~~~~~~~~l~~fv 148 (305)
+.++++.+||. ++||+++++. |+.+..+ .|..+.++|.+++
T Consensus 63 ~~~~~~~~~~~l~~~~~v~--gtPt~~~~d~~G~~v~~~---~G~~~~~~l~~~L 112 (112)
T PF13098_consen 63 GQKNVRLSNKELAQRYGVN--GTPTIVFLDKDGKIVYRI---PGYLSPEELLKML 112 (112)
T ss_dssp CHSSCHHHHHHHHHHTT----SSSEEEECTTTSCEEEEE---ESS--HHHHHHHH
T ss_pred cchhhhHHHHHHHHHcCCC--ccCEEEEEcCCCCEEEEe---cCCCCHHHHHhhC
Confidence 35699999998 9999999984 4433344 3778888888764
No 183
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.49 E-value=7.7e-07 Score=68.19 Aligned_cols=63 Identities=6% Similarity=-0.006 Sum_probs=54.5
Q ss_pred hhcC-ceEEEEEEeCCchhHHHHHHHcCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHHHcC
Q psy7938 85 LAGN-LKVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFLAG 154 (305)
Q Consensus 85 ~~~~-~~v~~~~vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~~~~ 154 (305)
.++. +++.|++||+| ++..|+.+|||. ++||+++|++|+.+... .|.++.+++.+++.+++..
T Consensus 63 ~e~~~~~v~~akVDiD--~~~~LA~~fgV~--siPTLl~FkdGk~v~~i---~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 63 REFPDYTWQVAIADLE--QSEAIGDRFGVF--RFPATLVFTGGNYRGVL---NGIHPWAELINLMRGLVEP 126 (132)
T ss_pred HHhcCCceEEEEEECC--CCHHHHHHcCCc--cCCEEEEEECCEEEEEE---eCcCCHHHHHHHHHHHhcC
Confidence 3444 46999999999 889999999998 99999999999876666 3778899999999999864
No 184
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.44 E-value=1.2e-06 Score=71.30 Aligned_cols=86 Identities=14% Similarity=0.071 Sum_probs=61.4
Q ss_pred CCCcEEEEEECCCChhhhhHHHHHHHHHHH-hCCC--CceEEEEE-----------------------------eCCccc
Q psy7938 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEK-FADR--DDITIAKI-----------------------------DATVNE 236 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~C~~~~~~~~~la~~-~~~~--~~v~~~~i-----------------------------d~~~~~ 236 (305)
.+|.++|.|||+||++|+...|.+.+++.. +.-+ .....+.. |-....
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v 137 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAV 137 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchH
Confidence 388999999999999999999999999754 2110 00011111 211111
Q ss_pred cccCCcccccEE-EEEeCCCceEEeeeCCCCHHHHHHHH
Q psy7938 237 LEHTKITSFPTL-KLYAKDDNRVIDYNGERVLEALSNFV 274 (305)
Q Consensus 237 ~~~~~i~~~Ptl-~~f~~g~~~~~~~~g~~~~~~l~~fi 274 (305)
...+++.++|+. +++++.++....+.|..+.+.+.+.+
T Consensus 138 ~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 138 KNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred HHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 157789999888 79999888888999998888877644
No 185
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.44 E-value=5.2e-08 Score=76.50 Aligned_cols=88 Identities=13% Similarity=0.163 Sum_probs=50.0
Q ss_pred HHHhhhhhcCcccccccccceeeeecccccc---------c--CCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchh
Q psy7938 34 RSFVTEFLAGNLKHSKFKKNLYIHLEEDMAK---------Y--KPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEED 102 (305)
Q Consensus 34 ~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~---------~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~ 102 (305)
+.+++.|||+||++|+...|.+.++...++. + ..-+...+.+.+..++++. + +.+..+......
T Consensus 26 k~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~----~-~~~~~~p~~~~~ 100 (146)
T cd03008 26 RVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDM----P-KKWLFLPFEDEF 100 (146)
T ss_pred CEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHC----C-CCceeecccchH
Confidence 5788899999999999998888775432221 0 0001111112222222221 1 122222111113
Q ss_pred HHHHHHHcCCCCCCCCeEEEEecCcC
Q psy7938 103 HQKILEFFGMSKDEVPSLRLIRLEED 128 (305)
Q Consensus 103 ~~~l~~~~~I~~~~~Ptl~~~~~~~~ 128 (305)
...++..|+|. ++|++++++..+.
T Consensus 101 ~~~l~~~y~v~--~iPt~vlId~~G~ 124 (146)
T cd03008 101 RRELEAQFSVE--ELPTVVVLKPDGD 124 (146)
T ss_pred HHHHHHHcCCC--CCCEEEEECCCCc
Confidence 35789999998 9999999997644
No 186
>PLN02412 probable glutathione peroxidase
Probab=98.43 E-value=1.4e-06 Score=70.48 Aligned_cols=89 Identities=19% Similarity=0.119 Sum_probs=68.5
Q ss_pred CCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCc-------c--c-----ccc----CC---------
Q psy7938 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATV-------N--E-----LEH----TK--------- 241 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~-------~--~-----~~~----~~--------- 241 (305)
.++.++|.||++||+.|+...|.+.++.+.+++. ++.++.|.++. . . .++ |.
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~-g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g 106 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ-GFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNG 106 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC-CcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCC
Confidence 3689999999999999999999999999999753 57777776531 1 0 011 10
Q ss_pred ---------------------cccccEEEEEeCCCceEEeeeCCCCHHHHHHHHHhcC
Q psy7938 242 ---------------------ITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVESGG 278 (305)
Q Consensus 242 ---------------------i~~~Ptl~~f~~g~~~~~~~~g~~~~~~l~~fi~~~~ 278 (305)
+...|+.++++++++...++.|..+.+.|...|+...
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l 164 (167)
T PLN02412 107 KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLL 164 (167)
T ss_pred CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 3345899999888887888999999999998887653
No 187
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.41 E-value=3.6e-06 Score=68.31 Aligned_cols=99 Identities=14% Similarity=0.231 Sum_probs=72.4
Q ss_pred CCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcc------c-------------------------c
Q psy7938 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVN------E-------------------------L 237 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~------~-------------------------~ 237 (305)
.++.++|.||++||+.|....+.+.++..++++ .++.++.|..+.. . .
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~-~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~ 102 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA-KGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA 102 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh-CCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH
Confidence 468999999999999999999999999999964 4677777765431 1 1
Q ss_pred ccCCcccccEEEEEeCCCceEEeeeC-----------CCCHHHHHHHHHhcCCCCCCCCCCCCC
Q psy7938 238 EHTKITSFPTLKLYAKDDNRVIDYNG-----------ERVLEALSNFVESGGKEGGLPSGAQQG 290 (305)
Q Consensus 238 ~~~~i~~~Ptl~~f~~g~~~~~~~~g-----------~~~~~~l~~fi~~~~~~~~~~~~~~~~ 290 (305)
+.|++...|++++++++++. .|.+ ..+...+.+-|+........+.+...+
T Consensus 103 ~~~~v~~~P~~~lid~~G~v--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 164 (171)
T cd02969 103 KAYGAACTPDFFLFDPDGKL--VYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVPVPQTPS 164 (171)
T ss_pred HHcCCCcCCcEEEECCCCeE--EEeecccCCcccccccccHHHHHHHHHHHHcCCCCCccccCC
Confidence 36678899999999987763 2332 235677888888776655555544443
No 188
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.40 E-value=1e-07 Score=78.50 Aligned_cols=111 Identities=10% Similarity=0.063 Sum_probs=66.0
Q ss_pred HHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCC
Q psy7938 33 VRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGM 112 (305)
Q Consensus 33 ~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I 112 (305)
-+.+|+.|||+||++|+...|.+.++...--.+...+..-+.+.+..++++. .....++..|.+ ..++..|||
T Consensus 68 gk~vvv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~---~~~~~~~~~D~~----~~~~~~~gv 140 (185)
T PRK15412 68 GKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKEL---GNPYALSLFDGD----GMLGLDLGV 140 (185)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHc---CCCCceEEEcCC----ccHHHhcCC
Confidence 3568889999999999988888766643211111111111122333333332 112222233433 567889999
Q ss_pred CCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHHHcC
Q psy7938 113 SKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFLAG 154 (305)
Q Consensus 113 ~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~~~~ 154 (305)
. ++|+..+++..+.+ .+.. .|..+.+++.+.++..+..
T Consensus 141 ~--~~P~t~vid~~G~i-~~~~-~G~~~~~~l~~~i~~~~~~ 178 (185)
T PRK15412 141 Y--GAPETFLIDGNGII-RYRH-AGDLNPRVWESEIKPLWEK 178 (185)
T ss_pred C--cCCeEEEECCCceE-EEEE-ecCCCHHHHHHHHHHHHHH
Confidence 8 99988888755442 2222 3778889999998888743
No 189
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.38 E-value=4.9e-07 Score=73.23 Aligned_cols=87 Identities=13% Similarity=0.082 Sum_probs=59.0
Q ss_pred hhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCch-----------hHHH
Q psy7938 37 VTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEE-----------DHQK 105 (305)
Q Consensus 37 iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-----------~~~~ 105 (305)
++.||++||++|+...|.+.++. ++++ +.++.|+.|.. ....
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~-------------------------~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~ 125 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLA-------------------------QQYG--FSVFPYTLDGQGDTAFPEALPAPPDV 125 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHH-------------------------HHcC--CEEEEEEeCCCCCCCCceEecCchhH
Confidence 66799999999998888887772 3332 33333333311 1234
Q ss_pred HHHHcCCCCCCCCeEEEEecCcCce--eccCCCCCCCHHHHHHHHHHHHc
Q psy7938 106 ILEFFGMSKDEVPSLRLIRLEEDMA--KYKPATPEISVDTVRSFVTEFLA 153 (305)
Q Consensus 106 l~~~~~I~~~~~Ptl~~~~~~~~~~--~~~~~~~~~~~~~l~~fv~~~~~ 153 (305)
+...||+...++|+..+++..+.+. .+ .|..+.+++.+.+...++
T Consensus 126 ~~~~~g~~~~~iPttfLId~~G~i~~~~~---~G~~~~~~L~~~I~~ll~ 172 (181)
T PRK13728 126 MQTFFPNIPVATPTTFLVNVNTLEALPLL---QGATDAAGFMARMDTVLQ 172 (181)
T ss_pred HHHHhCCCCCCCCeEEEEeCCCcEEEEEE---ECCCCHHHHHHHHHHHHh
Confidence 6778995224999999998766532 23 378899999988888764
No 190
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.38 E-value=1.2e-07 Score=73.55 Aligned_cols=71 Identities=14% Similarity=0.205 Sum_probs=46.1
Q ss_pred HHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCc-------------
Q psy7938 34 RSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDE------------- 100 (305)
Q Consensus 34 ~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~------------- 100 (305)
+.+++.||++||++|+...|.+.++...++. ....+.++.|+.+.
T Consensus 19 k~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~----------------------~~~~~~vv~is~d~~~~~~~~~~~~~~ 76 (131)
T cd03009 19 KTVGLYFSASWCPPCRAFTPKLVEFYEKLKE----------------------SGKNFEIVFISWDRDEESFNDYFSKMP 76 (131)
T ss_pred cEEEEEEECCCChHHHHHhHHHHHHHHHHHh----------------------cCCCEEEEEEECCCCHHHHHHHHHcCC
Confidence 5678899999999999888776655333211 00122222222221
Q ss_pred ---------hhHHHHHHHcCCCCCCCCeEEEEecCcC
Q psy7938 101 ---------EDHQKILEFFGMSKDEVPSLRLIRLEED 128 (305)
Q Consensus 101 ---------~~~~~l~~~~~I~~~~~Ptl~~~~~~~~ 128 (305)
.....+++.|||. ++|++++++.+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~v~--~~P~~~lid~~G~ 111 (131)
T cd03009 77 WLAVPFSDRERRSRLNRTFKIE--GIPTLIILDADGE 111 (131)
T ss_pred eeEcccCCHHHHHHHHHHcCCC--CCCEEEEECCCCC
Confidence 1335788999998 9999999986544
No 191
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.36 E-value=2.3e-06 Score=68.06 Aligned_cols=83 Identities=24% Similarity=0.242 Sum_probs=61.1
Q ss_pred CCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCc--------cc-c----cc-CC-------------
Q psy7938 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATV--------NE-L----EH-TK------------- 241 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~--------~~-~----~~-~~------------- 241 (305)
.++.++|.||++||+ |+...|.++++.+.+++ .++.++.|.++. .+ . ++ ++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~-~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~ 98 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKD-RGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNG 98 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcC-CCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccC
Confidence 378999999999999 99999999999999964 357777776431 11 0 11 11
Q ss_pred ----------ccccc-----------EEEEEeCCCceEEeeeCCCCHHHHHHH
Q psy7938 242 ----------ITSFP-----------TLKLYAKDDNRVIDYNGERVLEALSNF 273 (305)
Q Consensus 242 ----------i~~~P-----------tl~~f~~g~~~~~~~~g~~~~~~l~~f 273 (305)
+.++| +.+++.++++...++.|..+.+.|.+.
T Consensus 99 ~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 99 ENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 23456 678888888878889998888777653
No 192
>KOG0914|consensus
Probab=98.36 E-value=6.1e-07 Score=73.03 Aligned_cols=83 Identities=24% Similarity=0.446 Sum_probs=67.5
Q ss_pred CcEEe-cccChhHHH-hcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcc-----
Q psy7938 173 AVKVL-VASNFDEIA-FDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKIT----- 243 (305)
Q Consensus 173 ~v~~l-~~~~f~~~v-~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~----- 243 (305)
.++.+ +.+.+++.+ .+..+.|+|.|++-|.+.|..+.|.+.+++..|.. ..+.|+++|...-.. .+|+|+
T Consensus 125 ~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~-~~lkFGkvDiGrfpd~a~kfris~s~~s 203 (265)
T KOG0914|consen 125 TIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNN-NLLKFGKVDIGRFPDVAAKFRISLSPGS 203 (265)
T ss_pred heeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCC-CCCcccceeeccCcChHHheeeccCccc
Confidence 37777 445555555 45556899999999999999999999999999964 689999999886543 677664
Q ss_pred -cccEEEEEeCCCc
Q psy7938 244 -SFPTLKLYAKDDN 256 (305)
Q Consensus 244 -~~Ptl~~f~~g~~ 256 (305)
..||+++|.+|++
T Consensus 204 rQLPT~ilFq~gkE 217 (265)
T KOG0914|consen 204 RQLPTYILFQKGKE 217 (265)
T ss_pred ccCCeEEEEccchh
Confidence 6999999999976
No 193
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.35 E-value=6.8e-08 Score=78.70 Aligned_cols=107 Identities=10% Similarity=0.016 Sum_probs=63.4
Q ss_pred HHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCC
Q psy7938 34 RSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMS 113 (305)
Q Consensus 34 ~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~ 113 (305)
+.+++.||++||++|+...|.+.++...--.+...+.....+....++.+ . .+.|..+..| ....++..|++.
T Consensus 64 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~---~--~~~f~~v~~D--~~~~~~~~~~v~ 136 (173)
T TIGR00385 64 KPVLLNVWASWCPPCRAEHPYLNELAKDGLPIVGVDYKDQSQNALKFLKE---L--GNPYQAILID--PNGKLGLDLGVY 136 (173)
T ss_pred CEEEEEEECCcCHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHH---c--CCCCceEEEC--CCCchHHhcCCe
Confidence 56888999999999998887776653321011101110111112222222 1 1233333344 446788999998
Q ss_pred CCCCCeEEEEecCcC-ceeccCCCCCCCHHHHHHHHHHHH
Q psy7938 114 KDEVPSLRLIRLEED-MAKYKPATPEISVDTVRSFVTEFL 152 (305)
Q Consensus 114 ~~~~Ptl~~~~~~~~-~~~~~~~~~~~~~~~l~~fv~~~~ 152 (305)
++|+.++++..+. ...+ .|..+.+++.+++.+.+
T Consensus 137 --~~P~~~~id~~G~i~~~~---~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 137 --GAPETFLVDGNGVILYRH---AGPLNNEVWTEGFLPAM 171 (173)
T ss_pred --eCCeEEEEcCCceEEEEE---eccCCHHHHHHHHHHHh
Confidence 8998877765433 2233 26788999999998876
No 194
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.32 E-value=4.4e-06 Score=66.54 Aligned_cols=87 Identities=15% Similarity=0.166 Sum_probs=65.7
Q ss_pred CCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCc--------cc-----ccc-CC-------------
Q psy7938 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATV--------NE-----LEH-TK------------- 241 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~--------~~-----~~~-~~------------- 241 (305)
.++.++|.||++||++|+...|.+.++.+.++. .++.++.|+++. .+ .++ ++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~-~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~ 99 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGP-SHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILG 99 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh-CCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCC
Confidence 367899999999999999999999999999974 367887777521 11 011 11
Q ss_pred ----------c---ccccE----EEEEeCCCceEEeeeCCCCHHHHHHHHHh
Q psy7938 242 ----------I---TSFPT----LKLYAKDDNRVIDYNGERVLEALSNFVES 276 (305)
Q Consensus 242 ----------i---~~~Pt----l~~f~~g~~~~~~~~g~~~~~~l~~fi~~ 276 (305)
+ .++|+ .+++.++++....+.|..+.+.|.+.|.+
T Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~ 151 (153)
T TIGR02540 100 SEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITA 151 (153)
T ss_pred CCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHH
Confidence 1 13786 78888888878889999999998888764
No 195
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.31 E-value=1.3e-07 Score=68.88 Aligned_cols=88 Identities=15% Similarity=0.199 Sum_probs=43.9
Q ss_pred HHhhhhhcCcccccccccceeeeecccccc---cCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcC
Q psy7938 35 SFVTEFLAGNLKHSKFKKNLYIHLEEDMAK---YKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFG 111 (305)
Q Consensus 35 ~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~ 111 (305)
..++.||++||++|+...|.+.++...++. +.-.....+ ++...+.+-..+.......+.++.+ ....+.+.|+
T Consensus 3 ~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 79 (95)
T PF13905_consen 3 PVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLD-EDEEEWKKFLKKNNFPWYNVPFDDD--NNSELLKKYG 79 (95)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-S-SSHHHHHHHHHTCTTSSEEEETTTH--HHHHHHHHTT
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeC-CCHHHHHHHHHhcCCCceEEeeCcc--hHHHHHHHCC
Confidence 356789999999998776666665444330 000000000 0011111111111111111112222 4567999999
Q ss_pred CCCCCCCeEEEEecCc
Q psy7938 112 MSKDEVPSLRLIRLEE 127 (305)
Q Consensus 112 I~~~~~Ptl~~~~~~~ 127 (305)
|. ++|++++++..+
T Consensus 80 i~--~iP~~~lld~~G 93 (95)
T PF13905_consen 80 IN--GIPTLVLLDPDG 93 (95)
T ss_dssp -T--SSSEEEEEETTS
T ss_pred CC--cCCEEEEECCCC
Confidence 98 999999999754
No 196
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.31 E-value=1.9e-07 Score=72.50 Aligned_cols=88 Identities=14% Similarity=0.174 Sum_probs=46.6
Q ss_pred HHHhhhhhcCcccccccccceeeeecccccc------cCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHH
Q psy7938 34 RSFVTEFLAGNLKHSKFKKNLYIHLEEDMAK------YKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKIL 107 (305)
Q Consensus 34 ~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~ 107 (305)
+.+++.||++||++|+...|.+.++...++. +...+...+.+.+..++++.. ... .+..+. ......++
T Consensus 18 k~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~---~~~-~~~~~d-~~~~~~~~ 92 (132)
T cd02964 18 KTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMP---PWL-AVPFED-EELRELLE 92 (132)
T ss_pred CEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCC---CeE-eeccCc-HHHHHHHH
Confidence 5678899999999999887766655332221 000011111112222222111 111 111111 01235678
Q ss_pred HHcCCCCCCCCeEEEEecCcC
Q psy7938 108 EFFGMSKDEVPSLRLIRLEED 128 (305)
Q Consensus 108 ~~~~I~~~~~Ptl~~~~~~~~ 128 (305)
+.|||. ++|++++++.++.
T Consensus 93 ~~~~v~--~iPt~~lid~~G~ 111 (132)
T cd02964 93 KQFKVE--GIPTLVVLKPDGD 111 (132)
T ss_pred HHcCCC--CCCEEEEECCCCC
Confidence 889998 9999999986543
No 197
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.30 E-value=7.6e-05 Score=65.36 Aligned_cols=158 Identities=16% Similarity=0.256 Sum_probs=105.9
Q ss_pred ceEEEEEEeCCchhHHHHHHHcCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHHHcCcccccccCCCCCCc
Q psy7938 89 LKVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFLAGNLKQHLLSQPLPED 168 (305)
Q Consensus 89 ~~v~~~~vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~~~~~~~~~~~s~~~p~~ 168 (305)
..|.|+.||.. ....||+++|+. ..+++.+|+.+.. ..| .|.++++.|..|+.+.+.
T Consensus 89 ~gigfg~VD~~--Kd~klAKKLgv~--E~~SiyVfkd~~~-IEy---dG~~saDtLVeFl~dl~e--------------- 145 (383)
T PF01216_consen 89 KGIGFGMVDSK--KDAKLAKKLGVE--EEGSIYVFKDGEV-IEY---DGERSADTLVEFLLDLLE--------------- 145 (383)
T ss_dssp CTEEEEEEETT--TTHHHHHHHT----STTEEEEEETTEE-EEE----S--SHHHHHHHHHHHHS---------------
T ss_pred cCcceEEeccH--HHHHHHHhcCcc--ccCcEEEEECCcE-EEe---cCccCHHHHHHHHHHhcc---------------
Confidence 45999999999 778999999998 7899999998865 566 389999999999999963
Q ss_pred cccCCcEEeccc-ChhHHHhcCCCcEEEEEECCC-ChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccccccCCccccc
Q psy7938 169 WDKNAVKVLVAS-NFDEIAFDKSKHVLVEFYAPW-CGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFP 246 (305)
Q Consensus 169 ~~~~~v~~l~~~-~f~~~v~~~~~~~lv~f~~~~-C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~~~~~i~~~P 246 (305)
.+|..++++ ++..+-.-.....+|-|+.+. ..+ ...|+.+|..|+. -+.|..+ .++.-++++++. +=
T Consensus 146 ---dPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~~----yk~FeeAAe~F~p--~IkFfAt-fd~~vAk~L~lK-~n 214 (383)
T PF01216_consen 146 ---DPVEIINNKHELKAFERIEDDIKLIGYFKSEDSEH----YKEFEEAAEHFQP--YIKFFAT-FDKKVAKKLGLK-LN 214 (383)
T ss_dssp ---SSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSHH----HHHHHHHHHHCTT--TSEEEEE--SHHHHHHHT-S-TT
T ss_pred ---cchhhhcChhhhhhhhhcccceeEEEEeCCCCcHH----HHHHHHHHHhhcC--ceeEEEE-ecchhhhhcCcc-cc
Confidence 237777553 333332223467788877764 333 5678899999964 5666642 244445677775 77
Q ss_pred EEEEEeCCCceEEeeeC-CCCHHHHHHHHHhcCCC
Q psy7938 247 TLKLYAKDDNRVIDYNG-ERVLEALSNFVESGGKE 280 (305)
Q Consensus 247 tl~~f~~g~~~~~~~~g-~~~~~~l~~fi~~~~~~ 280 (305)
.+-+|.+=...|+...| ..+.++|.+||++|.+.
T Consensus 215 ev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rp 249 (383)
T PF01216_consen 215 EVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRP 249 (383)
T ss_dssp -EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-
T ss_pred ceeeeccccCCCccCCCCCCCHHHHHHHHHHhchh
Confidence 88899887666888888 66889999999998753
No 198
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.29 E-value=2.2e-06 Score=58.79 Aligned_cols=67 Identities=19% Similarity=0.385 Sum_probs=50.1
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc------ccCCcccccEEEEEeCCCceEEeeeCCCCH
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL------EHTKITSFPTLKLYAKDDNRVIDYNGERVL 267 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~------~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~~ 267 (305)
+..|+++||++|+.+.+.+.+. ++.+..+|.+.+.. +.+++.++|++++. | . . ..| .+.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~--------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~-~-~--~~g-~~~ 66 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK--------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--H-K-I--IVG-FDP 66 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC--------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--C-E-E--Eee-CCH
Confidence 5689999999999998887652 46677778776542 45899999999984 3 2 2 555 477
Q ss_pred HHHHHHHH
Q psy7938 268 EALSNFVE 275 (305)
Q Consensus 268 ~~l~~fi~ 275 (305)
+.|.+||+
T Consensus 67 ~~i~~~i~ 74 (74)
T TIGR02196 67 EKLDQLLE 74 (74)
T ss_pred HHHHHHhC
Confidence 88888874
No 199
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.28 E-value=2.9e-06 Score=63.20 Aligned_cols=71 Identities=32% Similarity=0.685 Sum_probs=57.6
Q ss_pred CCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCC-cccc--ccCC--cccccEEEEEeCCCceEEeeeC
Q psy7938 190 SKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDAT-VNEL--EHTK--ITSFPTLKLYAKDDNRVIDYNG 263 (305)
Q Consensus 190 ~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~-~~~~--~~~~--i~~~Ptl~~f~~g~~~~~~~~g 263 (305)
++++++.||++||++|+.+.|.+.++++.+.. .+.+..+|.. .+.. ..++ +..+|+++++..+.. ...+.+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~ 107 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE-VDRLVG 107 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC--CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch-hhhhhh
Confidence 77899999999999999999999999999964 6788888875 3332 7777 899999998888765 444444
No 200
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.27 E-value=5.2e-06 Score=62.31 Aligned_cols=66 Identities=15% Similarity=0.284 Sum_probs=55.4
Q ss_pred cCceEEEEEEeCCchhHHHHHHHcCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHHHcCc
Q psy7938 87 GNLKVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFLAGN 155 (305)
Q Consensus 87 ~~~~v~~~~vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~~~~~ 155 (305)
++|++.|+.+|.+ +....++.||++.+..|.+++.... ...+|.+..+..+.++|.+|+++++.|+
T Consensus 46 ~kgki~Fv~~d~~--~~~~~~~~fgl~~~~~P~i~i~~~~-~~~Ky~~~~~~~t~~~i~~Fv~~~~~Gk 111 (111)
T cd03072 46 EKGAINFLTADGD--KFRHPLLHLGKTPADLPVIAIDSFR-HMYLFPDFEDVYVPGKLKQFVLDLHSGK 111 (111)
T ss_pred cCceEEEEEEech--HhhhHHHHcCCCHhHCCEEEEEcch-hcCcCCCCccccCHHHHHHHHHHHhcCC
Confidence 8899999999999 6666899999985569999999874 3368863346899999999999998874
No 201
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.26 E-value=2.9e-07 Score=66.22 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=44.5
Q ss_pred hhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCCCCCC
Q psy7938 38 TEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMSKDEV 117 (305)
Q Consensus 38 v~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~~~~~ 117 (305)
.-|+++||++|....+++.+++ .. .+++.+..+|.+ +.++++.+|||. +.
T Consensus 17 ~~F~~~~C~~C~~~~~~~~~l~-------------------------~~-~~~i~~~~vd~~--~~~e~a~~~~V~--~v 66 (89)
T cd03026 17 ETYVSLSCHNCPDVVQALNLMA-------------------------VL-NPNIEHEMIDGA--LFQDEVEERGIM--SV 66 (89)
T ss_pred EEEECCCCCCcHHHHHHHHHHH-------------------------HH-CCCceEEEEEhH--hCHHHHHHcCCc--cC
Confidence 3489999999987776666652 22 256999999999 888999999998 99
Q ss_pred CeEEE
Q psy7938 118 PSLRL 122 (305)
Q Consensus 118 Ptl~~ 122 (305)
||+++
T Consensus 67 Pt~vi 71 (89)
T cd03026 67 PAIFL 71 (89)
T ss_pred CEEEE
Confidence 99974
No 202
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.25 E-value=3.3e-05 Score=57.57 Aligned_cols=104 Identities=29% Similarity=0.446 Sum_probs=76.7
Q ss_pred CcEEecccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHH-HHhCCCCceEEEEEeCCccc------c-ccCCc--
Q psy7938 173 AVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLG-EKFADRDDITIAKIDATVNE------L-EHTKI-- 242 (305)
Q Consensus 173 ~v~~l~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la-~~~~~~~~v~~~~id~~~~~------~-~~~~i-- 242 (305)
....|+.-+|++++ ...+.++|-|=... +--.-...|.++| +......++.++.|-+.... . ++|++
T Consensus 5 G~v~LD~~tFdKvi-~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 5 GCVPLDELTFDKVI-PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp TSEEESTTHHHHHG-GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred ceeeccceehhhee-ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 37789999999998 44689999996542 1223356888999 66666678999999765422 2 78888
Q ss_pred ccccEEEEEeCCCceEEee--eCCCCHHHHHHHHHhcCC
Q psy7938 243 TSFPTLKLYAKDDNRVIDY--NGERVLEALSNFVESGGK 279 (305)
Q Consensus 243 ~~~Ptl~~f~~g~~~~~~~--~g~~~~~~l~~fi~~~~~ 279 (305)
..+|.+++|.++...++.| .|..+.++|.+|+.+++.
T Consensus 82 e~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 82 EDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp CC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred ccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 5799999999777779999 899999999999999864
No 203
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.24 E-value=2.3e-07 Score=69.87 Aligned_cols=25 Identities=16% Similarity=0.037 Sum_probs=21.5
Q ss_pred HHHhhhhhcCcccccccccceeeee
Q psy7938 34 RSFVTEFLAGNLKHSKFKKNLYIHL 58 (305)
Q Consensus 34 ~~~iv~f~a~wc~~c~~~~p~~~~~ 58 (305)
+++++.||++||++|+...|.+.++
T Consensus 22 k~vvl~F~~~wC~~C~~~~p~l~~~ 46 (114)
T cd02967 22 RPTLLFFLSPTCPVCKKLLPVIRSI 46 (114)
T ss_pred CeEEEEEECCCCcchHhHhHHHHHH
Confidence 5788899999999999888777665
No 204
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.23 E-value=3.9e-07 Score=69.63 Aligned_cols=100 Identities=19% Similarity=0.160 Sum_probs=59.1
Q ss_pred HHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCC
Q psy7938 34 RSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMS 113 (305)
Q Consensus 34 ~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~ 113 (305)
+.+++.||++||++|+.+.|.+..+...+.-+.-.....+.+.+..++++ ++ +.+-.+. + .+..++..|+|.
T Consensus 21 k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~---~~--~~~~~~~-d--~~~~~~~~~~i~ 92 (123)
T cd03011 21 KPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQK---KG--YGFPVIN-D--PDGVISARWGVS 92 (123)
T ss_pred CEEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHH---cC--CCccEEE-C--CCcHHHHhCCCC
Confidence 57888999999999998887777664442211000000112222222222 22 2233222 3 346799999998
Q ss_pred CCCCCeEEEEecCcCceeccCCCCCCCHHHHHH
Q psy7938 114 KDEVPSLRLIRLEEDMAKYKPATPEISVDTVRS 146 (305)
Q Consensus 114 ~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~ 146 (305)
++|++.+++.++ ..+.. .|..+.++|.+
T Consensus 93 --~~P~~~vid~~g--i~~~~-~g~~~~~~~~~ 120 (123)
T cd03011 93 --VTPAIVIVDPGG--IVFVT-TGVTSEWGLRL 120 (123)
T ss_pred --cccEEEEEcCCC--eEEEE-eccCCHHHHHh
Confidence 999999999775 23322 26677777754
No 205
>KOG2501|consensus
Probab=98.23 E-value=1.2e-06 Score=68.42 Aligned_cols=68 Identities=24% Similarity=0.481 Sum_probs=55.3
Q ss_pred CCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCC---CceEEEEEeCCccc-------------------------cccC
Q psy7938 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADR---DDITIAKIDATVNE-------------------------LEHT 240 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~---~~v~~~~id~~~~~-------------------------~~~~ 240 (305)
.++.+.++|.|.||++|+.+.|.+.++.+.++.+ -.|+|+.-|-+..+ ..+|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 4689999999999999999999999999888654 24677766655543 1477
Q ss_pred CcccccEEEEEeCCCc
Q psy7938 241 KITSFPTLKLYAKDDN 256 (305)
Q Consensus 241 ~i~~~Ptl~~f~~g~~ 256 (305)
.|.++|++++.+.++.
T Consensus 112 ~v~~iP~l~i~~~dG~ 127 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGT 127 (157)
T ss_pred ccCcCceeEEecCCCC
Confidence 8999999999998876
No 206
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.22 E-value=1.1e-06 Score=66.36 Aligned_cols=94 Identities=16% Similarity=0.332 Sum_probs=66.6
Q ss_pred hHHHHHhhhhhcCccccccccc-ceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHH
Q psy7938 31 DTVRSFVTEFLAGNLKHSKFKK-NLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEF 109 (305)
Q Consensus 31 ~~~~~~iv~f~a~wc~~c~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~ 109 (305)
++.+.+++.|+++||.+|+.+. .+|..- . +...+ .....+..+|.+..+...++..
T Consensus 15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~--~---------------v~~~l------~~~~v~~~~d~~~~e~~~~~~~ 71 (114)
T cd02958 15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNE--S---------------VKEFI------RENFIFWQCDIDSSEGQRFLQS 71 (114)
T ss_pred hhCceEEEEEecCCcchHHHHHHHHcCCH--H---------------HHHHH------HhCEEEEEecCCCccHHHHHHH
Confidence 4467788899999999998763 233221 1 11111 1346677888887678899999
Q ss_pred cCCCCCCCCeEEEEec-CcC-ceeccCCCCCCCHHHHHHHHHHHH
Q psy7938 110 FGMSKDEVPSLRLIRL-EED-MAKYKPATPEISVDTVRSFVTEFL 152 (305)
Q Consensus 110 ~~I~~~~~Ptl~~~~~-~~~-~~~~~~~~~~~~~~~l~~fv~~~~ 152 (305)
|++. ++|+++++++ .+. +... .|..+.+++.+.+.+..
T Consensus 72 ~~~~--~~P~~~~i~~~~g~~l~~~---~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 72 YKVD--KYPHIAIIDPRTGEVLKVW---SGNITPEDLLSQLIEFL 111 (114)
T ss_pred hCcc--CCCeEEEEeCccCcEeEEE---cCCCCHHHHHHHHHHHH
Confidence 9998 9999999987 333 3333 47889999988888765
No 207
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.21 E-value=8.2e-06 Score=68.59 Aligned_cols=83 Identities=22% Similarity=0.319 Sum_probs=63.3
Q ss_pred CCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCc----------c-ccccCCcccccEEEEEeCCCce
Q psy7938 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATV----------N-ELEHTKITSFPTLKLYAKDDNR 257 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~----------~-~~~~~~i~~~Ptl~~f~~g~~~ 257 (305)
.++.-|++||.+.|+.|..+.|.+..+++.+. -.|..+.+|... . ..+.++|..+|++++...++..
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK 196 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence 36678999999999999999999999999993 244555555321 1 1268999999999999987744
Q ss_pred -EEeeeCCCCHHHHHHH
Q psy7938 258 -VIDYNGERVLEALSNF 273 (305)
Q Consensus 258 -~~~~~g~~~~~~l~~f 273 (305)
...-.|..+.++|.+=
T Consensus 197 ~~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 197 WYPVSQGFMSLDELEDR 213 (215)
T ss_pred EEEEeeecCCHHHHHHh
Confidence 4456688888888763
No 208
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.21 E-value=9.1e-07 Score=72.06 Aligned_cols=135 Identities=13% Similarity=0.132 Sum_probs=73.7
Q ss_pred CCCCCeEEEEe-----eccCceecCCCCCCCChhHHHHHhhhhhcCcccccccccceeeeecccc-cc--c---CCCCCc
Q psy7938 3 KDEVPSLRLIR-----LEEDMAKYKPATPEINVDTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDM-AK--Y---KPASPE 71 (305)
Q Consensus 3 ~~~~p~i~l~~-----~~~~~~~~~~~~~~~~~~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~-~~--~---~~~~~~ 71 (305)
++..|.+.+-. ++++-+.|.+- ....-.-+.+|+.|||+||++|+.-+|++.++...- .. | ..-+..
T Consensus 26 ~~~~p~v~~~~~ge~~~~~~~~~y~~~--~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~d 103 (184)
T TIGR01626 26 EQSVPSVGVSEYGEIVLSGKDTVYQPW--GSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINAD 103 (184)
T ss_pred CCcCCceEecCCceEEEcCCcccceec--cHHHcCCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECc
Confidence 45567776643 24455555321 111111456788999999999999999999885421 11 0 000111
Q ss_pred chhhhhhhHHHHHhh-c--CceEEEEEEeCCchhHHHHHHHcCCCCCCCCeE-EEEecCcCceeccCCCCCCCHHHHHHH
Q psy7938 72 INVDTVRSFVTEFLA-G--NLKVLFVTINTDEEDHQKILEFFGMSKDEVPSL-RLIRLEEDMAKYKPATPEISVDTVRSF 147 (305)
Q Consensus 72 ~~~~~~~~~~~~~~~-~--~~~v~~~~vd~~~~~~~~l~~~~~I~~~~~Ptl-~~~~~~~~~~~~~~~~~~~~~~~l~~f 147 (305)
-+......++..+.+ . .....-+.+|.+ ..++..||+. ++|+. .+++..+.+... . .|.++.+++.+.
T Consensus 104 d~~~~~~~fVk~fie~~~~~~P~~~vllD~~----g~v~~~~gv~--~~P~T~fVIDk~GkVv~~-~-~G~l~~ee~e~~ 175 (184)
T TIGR01626 104 DAIVGTGMFVKSSAKKGKKENPWSQVVLDDK----GAVKNAWQLN--SEDSAIIVLDKTGKVKFV-K-EGALSDSDIQTV 175 (184)
T ss_pred cchhhHHHHHHHHHHHhcccCCcceEEECCc----chHHHhcCCC--CCCceEEEECCCCcEEEE-E-eCCCCHHHHHHH
Confidence 111122333332211 1 111223445543 5678899998 99877 688766553222 2 377888887773
No 209
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.19 E-value=8e-05 Score=71.26 Aligned_cols=136 Identities=18% Similarity=0.190 Sum_probs=95.2
Q ss_pred CCCeEEEEecCcC-ceeccCCCCCCCHHHHHHHHHHHHcCcccccccCCCCCCccccCCcEEecccChhHHHhcCCC-cE
Q psy7938 116 EVPSLRLIRLEED-MAKYKPATPEISVDTVRSFVTEFLAGNLKQHLLSQPLPEDWDKNAVKVLVASNFDEIAFDKSK-HV 193 (305)
Q Consensus 116 ~~Ptl~~~~~~~~-~~~~~~~~~~~~~~~l~~fv~~~~~~~~~~~~~s~~~p~~~~~~~v~~l~~~~f~~~v~~~~~-~~ 193 (305)
..|++.+.+.++. ..+|. |--.-.++..|+...+.-. +.-..|+....+ .+..-++ .-
T Consensus 60 ~~p~~~~~~~~~~~~i~f~---g~P~g~Ef~s~i~~i~~~~----------------~~~~~l~~~~~~-~i~~~~~~~~ 119 (517)
T PRK15317 60 RKPSFSITRPGEDTGVRFA---GIPMGHEFTSLVLALLQVG----------------GHPPKLDQEVIE-QIKALDGDFH 119 (517)
T ss_pred CCCEEEEEcCCccceEEEE---ecCccHHHHHHHHHHHHhc----------------CCCCCCCHHHHH-HHHhcCCCeE
Confidence 4799999875533 24553 3344567889988875411 011222223333 2333344 45
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEEEeCCCceEEeeeCCCCHHHHH
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLYAKDDNRVIDYNGERVLEALS 271 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~~~~l~ 271 (305)
+..|+++.|++|......+++++... +++.+-.+|....+. .+|++.++|++++ ++ + ..+.|..+.+.|.
T Consensus 120 i~~fv~~~Cp~Cp~~v~~~~~~a~~~---~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~-~--~~~~g~~~~~~~~ 191 (517)
T PRK15317 120 FETYVSLSCHNCPDVVQALNLMAVLN---PNITHTMIDGALFQDEVEARNIMAVPTVFL--NG-E--EFGQGRMTLEEIL 191 (517)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHhC---CCceEEEEEchhCHhHHHhcCCcccCEEEE--CC-c--EEEecCCCHHHHH
Confidence 88899999999999999999998865 478888889887765 8999999999976 33 2 4578999999999
Q ss_pred HHHHhcCC
Q psy7938 272 NFVESGGK 279 (305)
Q Consensus 272 ~fi~~~~~ 279 (305)
+.+.+...
T Consensus 192 ~~~~~~~~ 199 (517)
T PRK15317 192 AKLDTGAA 199 (517)
T ss_pred HHHhcccc
Confidence 98887654
No 210
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.18 E-value=8.8e-07 Score=90.82 Aligned_cols=107 Identities=14% Similarity=0.182 Sum_probs=67.5
Q ss_pred HHHhhhhhcCcccccccccceeeeeccccccc----CCC-----CCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHH
Q psy7938 34 RSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKY----KPA-----SPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQ 104 (305)
Q Consensus 34 ~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~ 104 (305)
+.+|++|||+||++|+...|.+.++...++.- ... ..+.+.+.+..++.+. . +.+-.+ +| ...
T Consensus 421 K~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~---~--i~~pvv-~D--~~~ 492 (1057)
T PLN02919 421 KVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRY---N--ISHPVV-ND--GDM 492 (1057)
T ss_pred CEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHh---C--CCccEE-EC--Cch
Confidence 57899999999999998888888776554320 000 0111233344444322 1 222211 23 346
Q ss_pred HHHHHcCCCCCCCCeEEEEec-CcCceeccCCCCCCCHHHHHHHHHHHHc
Q psy7938 105 KILEFFGMSKDEVPSLRLIRL-EEDMAKYKPATPEISVDTVRSFVTEFLA 153 (305)
Q Consensus 105 ~l~~~~~I~~~~~Ptl~~~~~-~~~~~~~~~~~~~~~~~~l~~fv~~~~~ 153 (305)
.+..+|+|. ++|++++++. |+...++ .|....+.|.+++...+.
T Consensus 493 ~~~~~~~V~--~iPt~ilid~~G~iv~~~---~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 493 YLWRELGVS--SWPTFAVVSPNGKLIAQL---SGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred HHHHhcCCC--ccceEEEECCCCeEEEEE---ecccCHHHHHHHHHHHHH
Confidence 788999998 9999999974 4433444 367788889998888653
No 211
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.17 E-value=7.3e-06 Score=53.81 Aligned_cols=58 Identities=28% Similarity=0.672 Sum_probs=48.2
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc-----ccCCcccccEEEEEeCC
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL-----EHTKITSFPTLKLYAKD 254 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~-----~~~~i~~~Ptl~~f~~g 254 (305)
++.|+++||++|..+.+.+.++ ... ..++.+..++++.... ..+++.++|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALL--NKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-Hhh--CCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999998 333 3578888888887664 26789999999999887
No 212
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.15 E-value=3.9e-07 Score=70.16 Aligned_cols=98 Identities=10% Similarity=0.086 Sum_probs=55.1
Q ss_pred HHHhhhhhcCcccccccccceeeeeccccc-ccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCC
Q psy7938 34 RSFVTEFLAGNLKHSKFKKNLYIHLEEDMA-KYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGM 112 (305)
Q Consensus 34 ~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I 112 (305)
+..++.||++||++|+...|.+.++..... .+...+...+.+.+..++++. .+.+..+.+| ....++..|++
T Consensus 26 k~vvv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~-----~~~~~~~~~D--~~~~~~~~~~v 98 (127)
T cd03010 26 KPYLLNVWASWCAPCREEHPVLMALARQGRVPIYGINYKDNPENALAWLARH-----GNPYAAVGFD--PDGRVGIDLGV 98 (127)
T ss_pred CEEEEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEECCCCHHHHHHHHHhc-----CCCCceEEEC--CcchHHHhcCC
Confidence 467889999999999988777766643321 011011111122223322221 1223334445 45789999999
Q ss_pred CCCCCCeEEEEecCcC-ceeccCCCCCCCHHH
Q psy7938 113 SKDEVPSLRLIRLEED-MAKYKPATPEISVDT 143 (305)
Q Consensus 113 ~~~~~Ptl~~~~~~~~-~~~~~~~~~~~~~~~ 143 (305)
. ++|+.++++..+. ..++ .|.++.+.
T Consensus 99 ~--~~P~~~~ld~~G~v~~~~---~G~~~~~~ 125 (127)
T cd03010 99 Y--GVPETFLIDGDGIIRYKH---VGPLTPEV 125 (127)
T ss_pred C--CCCeEEEECCCceEEEEE---eccCChHh
Confidence 8 9997777764433 3344 25555544
No 213
>KOG0914|consensus
Probab=98.15 E-value=2.3e-07 Score=75.45 Aligned_cols=79 Identities=13% Similarity=0.202 Sum_probs=65.2
Q ss_pred CChhHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHH
Q psy7938 28 INVDTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKIL 107 (305)
Q Consensus 28 ~~~~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~ 107 (305)
.+-+....|++.|+|-|.+.|...+|.|.+++..+. .+.++|++||.. -.++.+
T Consensus 139 l~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn------------------------~~~lkFGkvDiG--rfpd~a 192 (265)
T KOG0914|consen 139 LDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYN------------------------NNLLKFGKVDIG--RFPDVA 192 (265)
T ss_pred hccCCceEEEEEEEeecChhhcccccccHHHHHHhC------------------------CCCCcccceeec--cCcChH
Confidence 444567889999999999999999999999944442 256899999999 888999
Q ss_pred HHcCCCC----CCCCeEEEEecCcCceec
Q psy7938 108 EFFGMSK----DEVPSLRLIRLEEDMAKY 132 (305)
Q Consensus 108 ~~~~I~~----~~~Ptl~~~~~~~~~~~~ 132 (305)
.+|+|.. +++||+++|..|+++.+.
T Consensus 193 ~kfris~s~~srQLPT~ilFq~gkE~~Rr 221 (265)
T KOG0914|consen 193 AKFRISLSPGSRQLPTYILFQKGKEVSRR 221 (265)
T ss_pred HheeeccCcccccCCeEEEEccchhhhcC
Confidence 9999962 688999999998775544
No 214
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.15 E-value=2.8e-05 Score=63.86 Aligned_cols=87 Identities=14% Similarity=0.103 Sum_probs=63.0
Q ss_pred CCcE-EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCc---------cc-----ccc---------------
Q psy7938 190 SKHV-LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATV---------NE-----LEH--------------- 239 (305)
Q Consensus 190 ~~~~-lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~---------~~-----~~~--------------- 239 (305)
++.+ ++.+|++||++|+...|.++++.+.+++ .++.++.|+++. .. .++
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~-~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g 118 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKS-QGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNG 118 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhh-CCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCC
Confidence 5654 5566999999999999999999999975 357777776531 00 001
Q ss_pred ---------------------CCcccccE---EEEEeCCCceEEeeeCCCCHHHHHHHHHhc
Q psy7938 240 ---------------------TKITSFPT---LKLYAKDDNRVIDYNGERVLEALSNFVESG 277 (305)
Q Consensus 240 ---------------------~~i~~~Pt---l~~f~~g~~~~~~~~g~~~~~~l~~fi~~~ 277 (305)
+++.++|+ .+++++.+....++.|..+.+.+.+.|.+.
T Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~l 180 (183)
T PTZ00256 119 ENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKL 180 (183)
T ss_pred CCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHH
Confidence 12346784 578888888788888988888888877754
No 215
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.15 E-value=2e-05 Score=54.79 Aligned_cols=71 Identities=24% Similarity=0.460 Sum_probs=52.0
Q ss_pred EEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc-cccCCcccccEEEEEeCCCceEEeeeC-CCCHHHHHHH
Q psy7938 196 EFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE-LEHTKITSFPTLKLYAKDDNRVIDYNG-ERVLEALSNF 273 (305)
Q Consensus 196 ~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~-~~~~~i~~~Ptl~~f~~g~~~~~~~~g-~~~~~~l~~f 273 (305)
.+++++|+.|..+...+++++..+. +.+--+|..... ..+|+|.++|++++ +| ...+.| ..+.+.|.+|
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~----i~~ei~~~~~~~~~~~ygv~~vPalvI--ng---~~~~~G~~p~~~el~~~ 74 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG----IEVEIIDIEDFEEIEKYGVMSVPALVI--NG---KVVFVGRVPSKEELKEL 74 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT----EEEEEEETTTHHHHHHTT-SSSSEEEE--TT---EEEEESS--HHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC----CeEEEEEccCHHHHHHcCCCCCCEEEE--CC---EEEEEecCCCHHHHHHH
Confidence 3478889999999999999999982 444444553333 38999999999976 34 377899 8888999988
Q ss_pred HH
Q psy7938 274 VE 275 (305)
Q Consensus 274 i~ 275 (305)
|+
T Consensus 75 l~ 76 (76)
T PF13192_consen 75 LE 76 (76)
T ss_dssp HH
T ss_pred hC
Confidence 74
No 216
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=3.3e-05 Score=59.86 Aligned_cols=87 Identities=15% Similarity=0.296 Sum_probs=66.4
Q ss_pred hcCCCcEEEEEECCCChhhhhHHHHHH---HHHHHhCCCCceEEEEEeCCccc------------------cccCCcccc
Q psy7938 187 FDKSKHVLVEFYAPWCGHCKQLAPIYD---KLGEKFADRDDITIAKIDATVNE------------------LEHTKITSF 245 (305)
Q Consensus 187 ~~~~~~~lv~f~~~~C~~C~~~~~~~~---~la~~~~~~~~v~~~~id~~~~~------------------~~~~~i~~~ 245 (305)
...++..++.|-++.|..|.++...+. .+-+.+. +++.++.++++... ...++++++
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk--~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst 116 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLK--EHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST 116 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHh--hCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC
Confidence 346788999999999999999977653 3444453 46777777766432 157889999
Q ss_pred cEEEEEeCCCceEEeeeCCCCHHHHHHHHH
Q psy7938 246 PTLKLYAKDDNRVIDYNGERVLEALSNFVE 275 (305)
Q Consensus 246 Ptl~~f~~g~~~~~~~~g~~~~~~l~~fi~ 275 (305)
||+++|++.++.+....|....+++..-++
T Consensus 117 PtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 117 PTFVFFDKTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred ceEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence 999999998777888899888887766444
No 217
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.11 E-value=1.4e-05 Score=62.37 Aligned_cols=83 Identities=16% Similarity=0.105 Sum_probs=62.1
Q ss_pred CCcEEEEEE-CCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc-----------------------cccCCcccc
Q psy7938 190 SKHVLVEFY-APWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE-----------------------LEHTKITSF 245 (305)
Q Consensus 190 ~~~~lv~f~-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~-----------------------~~~~~i~~~ 245 (305)
++.++|.|| +.||+.|....+.+.++...+.. .++.++.|..+... .+.|++...
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA-LGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 788999999 58999999999999999998864 34556555443322 145677777
Q ss_pred ---------cEEEEEeCCCceEEeeeCCCCHHHHHHH
Q psy7938 246 ---------PTLKLYAKDDNRVIDYNGERVLEALSNF 273 (305)
Q Consensus 246 ---------Ptl~~f~~g~~~~~~~~g~~~~~~l~~f 273 (305)
|+.++++++++....+.|....+.+.+-
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~ 138 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEV 138 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCCccchHHHH
Confidence 8999999877777888887776666553
No 218
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.08 E-value=1.4e-05 Score=55.46 Aligned_cols=68 Identities=22% Similarity=0.423 Sum_probs=44.2
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--cc-----CCcccccEEEEEeCCCceEEeeeCCCC
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EH-----TKITSFPTLKLYAKDDNRVIDYNGERV 266 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~-----~~i~~~Ptl~~f~~g~~~~~~~~g~~~ 266 (305)
++.|+++||++|+.+.+.+.+++.. +..+|.+.+.. .. +++.++|++ ++.+|.. . ...+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~--------~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~--l---~~~~ 67 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAA--------YEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSF--L---TNPS 67 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCc--------eEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeE--e---cCCC
Confidence 5789999999999999988776433 33466655443 22 488999997 4565522 1 1344
Q ss_pred HHHHHHHHH
Q psy7938 267 LEALSNFVE 275 (305)
Q Consensus 267 ~~~l~~fi~ 275 (305)
...+.+.|.
T Consensus 68 ~~~~~~~l~ 76 (77)
T TIGR02200 68 AAQVKAKLQ 76 (77)
T ss_pred HHHHHHHhh
Confidence 455655543
No 219
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.06 E-value=2.6e-05 Score=59.37 Aligned_cols=67 Identities=25% Similarity=0.511 Sum_probs=54.4
Q ss_pred CCCcEEEEEECC-CChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc-----------------------cccCCcc-
Q psy7938 189 KSKHVLVEFYAP-WCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE-----------------------LEHTKIT- 243 (305)
Q Consensus 189 ~~~~~lv~f~~~-~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~-----------------------~~~~~i~- 243 (305)
.+++++|.||+. ||++|....+.+.++...++. .++.++.|..+..+ .+.+++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~-~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 102 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD-KGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIED 102 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT-TTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhcc-ceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCcc
Confidence 468999999999 999999999999999999974 46777766665433 1456677
Q ss_pred -----cccEEEEEeCCCc
Q psy7938 244 -----SFPTLKLYAKDDN 256 (305)
Q Consensus 244 -----~~Ptl~~f~~g~~ 256 (305)
.+|+++++.+++.
T Consensus 103 ~~~~~~~p~~~lid~~g~ 120 (124)
T PF00578_consen 103 EKDTLALPAVFLIDPDGK 120 (124)
T ss_dssp TTTSEESEEEEEEETTSB
T ss_pred ccCCceEeEEEEECCCCE
Confidence 8999999999876
No 220
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.04 E-value=4.1e-05 Score=57.83 Aligned_cols=88 Identities=14% Similarity=0.037 Sum_probs=66.4
Q ss_pred hcCCCcEEEEEECC----CChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc----ccCCcccccEEEEEe---CCC
Q psy7938 187 FDKSKHVLVEFYAP----WCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL----EHTKITSFPTLKLYA---KDD 255 (305)
Q Consensus 187 ~~~~~~~lv~f~~~----~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~----~~~~i~~~Ptl~~f~---~g~ 255 (305)
....|.++|++|++ ||..|+.... =.++.+-+. .++++...|++..+. ..++++++|++.++. +..
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln--~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~ 90 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYIN--TRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRM 90 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHH--cCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCce
Confidence 46678999999999 8899976531 133444452 478888999987774 679999999999993 222
Q ss_pred ceEEeeeCCCCHHHHHHHHHhc
Q psy7938 256 NRVIDYNGERVLEALSNFVESG 277 (305)
Q Consensus 256 ~~~~~~~g~~~~~~l~~fi~~~ 277 (305)
....+..|..++++|...|...
T Consensus 91 ~vv~~i~G~~~~~~ll~~L~~~ 112 (116)
T cd02991 91 TIVGRLEGLIQPEDLINRLTFI 112 (116)
T ss_pred EEEEEEeCCCCHHHHHHHHHHH
Confidence 2367899999999999888754
No 221
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.03 E-value=4.6e-06 Score=69.39 Aligned_cols=47 Identities=11% Similarity=0.031 Sum_probs=31.3
Q ss_pred CCCeEEEEeeccCceecCCCCCCCChhHHHHHhhhhhcCcccccccccceeeee
Q psy7938 5 EVPSLRLIRLEEDMAKYKPATPEINVDTVRSFVTEFLAGNLKHSKFKKNLYIHL 58 (305)
Q Consensus 5 ~~p~i~l~~~~~~~~~~~~~~~~~~~~~~~~~iv~f~a~wc~~c~~~~p~~~~~ 58 (305)
..|.+.+...+...+.+. ++ + -+.+|+.|||+||++|+...|.+.++
T Consensus 18 ~~pdf~l~d~~G~~vsL~--~~----k-Gkvvlv~fwAswC~~C~~e~p~L~~l 64 (199)
T PTZ00056 18 SIYDYTVKTLEGTTVPMS--SL----K-NKVLMITNSASKCGLTKKHVDQMNRL 64 (199)
T ss_pred CCCceEEECCCCCEEeHH--Hh----C-CCEEEEEEECCCCCChHHHHHHHHHH
Confidence 366666666655555552 22 1 25788899999999998666665555
No 222
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.03 E-value=1.2e-06 Score=65.25 Aligned_cols=69 Identities=16% Similarity=0.238 Sum_probs=48.3
Q ss_pred HHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCch------------
Q psy7938 34 RSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEE------------ 101 (305)
Q Consensus 34 ~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~------------ 101 (305)
+.+++.||++||++|+...+.+..+...+ . +..+.++.|+++..
T Consensus 20 k~~ll~f~~~~C~~C~~~~~~l~~~~~~~----------------------~--~~~~~~~~v~~d~~~~~~~~~~~~~~ 75 (116)
T cd02966 20 KVVLVNFWASWCPPCRAEMPELEALAKEY----------------------K--DDGVEVVGVNVDDDDPAAVKAFLKKY 75 (116)
T ss_pred CEEEEEeecccChhHHHHhHHHHHHHHHh----------------------C--CCCeEEEEEECCCCCHHHHHHHHHHc
Confidence 57888999999999987665555552222 1 13466777776621
Q ss_pred ---------hHHHHHHHcCCCCCCCCeEEEEecCcC
Q psy7938 102 ---------DHQKILEFFGMSKDEVPSLRLIRLEED 128 (305)
Q Consensus 102 ---------~~~~l~~~~~I~~~~~Ptl~~~~~~~~ 128 (305)
....+++.||+. ++|++++++..+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~--~~P~~~l~d~~g~ 109 (116)
T cd02966 76 GITFPVLLDPDGELAKAYGVR--GLPTTFLIDRDGR 109 (116)
T ss_pred CCCcceEEcCcchHHHhcCcC--ccceEEEECCCCc
Confidence 126789999998 9999999986543
No 223
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.02 E-value=0.00028 Score=67.51 Aligned_cols=136 Identities=17% Similarity=0.150 Sum_probs=93.3
Q ss_pred CCCeEEEEecCcC-ceeccCCCCCCCHHHHHHHHHHHHcCcccccccCCCCCCccccCCcEEecccChhHHHhcCCC-cE
Q psy7938 116 EVPSLRLIRLEED-MAKYKPATPEISVDTVRSFVTEFLAGNLKQHLLSQPLPEDWDKNAVKVLVASNFDEIAFDKSK-HV 193 (305)
Q Consensus 116 ~~Ptl~~~~~~~~-~~~~~~~~~~~~~~~l~~fv~~~~~~~~~~~~~s~~~p~~~~~~~v~~l~~~~f~~~v~~~~~-~~ 193 (305)
..|++.+...++. ..+|. |--.-.++..|+...+.-.- .-..|+.+..+. +..-++ .-
T Consensus 61 ~~p~~~~~~~~~~~~i~f~---g~P~g~Ef~s~i~~i~~~~~----------------~~~~l~~~~~~~-~~~~~~~~~ 120 (515)
T TIGR03140 61 RKPSFTILRDGADTGIRFA---GIPGGHEFTSLVLAILQVGG----------------HGPKLDEGIIDR-IRRLNGPLH 120 (515)
T ss_pred CCCeEEEecCCcccceEEE---ecCCcHHHHHHHHHHHHhcC----------------CCCCCCHHHHHH-HHhcCCCeE
Confidence 5699998866542 24553 33445678888888754210 112233333333 323233 45
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEEEeCCCceEEeeeCCCCHHHHH
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLYAKDDNRVIDYNGERVLEALS 271 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~~~~l~ 271 (305)
+-.|+++.|++|......++.++... +++..-.+|...... .+|++.++|++++ ++ + ..+.|..+.+.+.
T Consensus 121 i~~f~~~~Cp~Cp~~v~~~~~~a~~~---p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~-~--~~~~g~~~~~~~~ 192 (515)
T TIGR03140 121 FETYVSLTCQNCPDVVQALNQMALLN---PNISHTMIDGALFQDEVEALGIQGVPAVFL--NG-E--EFHNGRMDLAELL 192 (515)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhC---CCceEEEEEchhCHHHHHhcCCcccCEEEE--CC-c--EEEecCCCHHHHH
Confidence 88899999999999998898888886 367777788887665 8999999999987 33 2 4578988988888
Q ss_pred HHHHhcCC
Q psy7938 272 NFVESGGK 279 (305)
Q Consensus 272 ~fi~~~~~ 279 (305)
+.+.+...
T Consensus 193 ~~l~~~~~ 200 (515)
T TIGR03140 193 EKLEETAG 200 (515)
T ss_pred HHHhhccC
Confidence 88876643
No 224
>smart00594 UAS UAS domain.
Probab=98.02 E-value=4.5e-06 Score=63.84 Aligned_cols=93 Identities=14% Similarity=0.293 Sum_probs=62.5
Q ss_pred hHHHHHhhhhhcCccccccccc-ceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHH
Q psy7938 31 DTVRSFVTEFLAGNLKHSKFKK-NLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEF 109 (305)
Q Consensus 31 ~~~~~~iv~f~a~wc~~c~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~ 109 (305)
++.+..++.|+++||..|+.+. .+|..- .+.. ... ..+.+..+|.+..+..++++.
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~-----------------~V~~----~i~--~~fv~~~~dv~~~eg~~l~~~ 81 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNE-----------------AVKS----LIR--ENFIFWQVDVDTSEGQRVSQF 81 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCH-----------------HHHH----HHH--cCEEEEEecCCChhHHHHHHh
Confidence 3345678889999999997653 222221 1111 121 357787889887788899999
Q ss_pred cCCCCCCCCeEEEEecCcCce--eccC-CCCCCCHHHHHHHH
Q psy7938 110 FGMSKDEVPSLRLIRLEEDMA--KYKP-ATPEISVDTVRSFV 148 (305)
Q Consensus 110 ~~I~~~~~Ptl~~~~~~~~~~--~~~~-~~~~~~~~~l~~fv 148 (305)
|+++ ++|++++++...... .... -.|..+.++|..++
T Consensus 82 ~~~~--~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 82 YKLD--SFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred cCcC--CCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 9998 999999998654211 1111 14788888888765
No 225
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.02 E-value=4.2e-05 Score=65.59 Aligned_cols=85 Identities=16% Similarity=0.221 Sum_probs=63.9
Q ss_pred CCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc-----------cccCCcccccEEEEEeCCCce-
Q psy7938 190 SKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE-----------LEHTKITSFPTLKLYAKDDNR- 257 (305)
Q Consensus 190 ~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~-----------~~~~~i~~~Ptl~~f~~g~~~- 257 (305)
++.-|++||.+.|+.|..+.|.++.+++.+. -.+..+.+|....+ ..+++|+.+|++++...+...
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 4578999999999999999999999999993 23444444433211 258899999999999888554
Q ss_pred EEeeeCCCCHHHHHHHHHh
Q psy7938 258 VIDYNGERVLEALSNFVES 276 (305)
Q Consensus 258 ~~~~~g~~~~~~l~~fi~~ 276 (305)
.-.-.|..+.++|.+=|..
T Consensus 228 ~pv~~G~iS~deL~~Ri~~ 246 (256)
T TIGR02739 228 SPLAYGFISQDELKERILN 246 (256)
T ss_pred EEEeeccCCHHHHHHHHHH
Confidence 3345688898888765554
No 226
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.99 E-value=4.3e-05 Score=55.64 Aligned_cols=88 Identities=19% Similarity=0.357 Sum_probs=64.9
Q ss_pred hhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccccccCCcccccEEEEEeCCCceEEee
Q psy7938 182 FDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKLYAKDDNRVIDY 261 (305)
Q Consensus 182 f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~~~~~i~~~Ptl~~f~~g~~~~~~~ 261 (305)
+..++ ..++.++|.|+.++|+ .....|.++|+.++. .+.|+.+. +......+++. -|++++|++....+..|
T Consensus 10 l~~~~-~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~--~~~F~~~~-~~~~~~~~~~~-~~~i~l~~~~~~~~~~y 81 (97)
T cd02981 10 LEKFL-DKDDVVVVGFFKDEES---EEYKTFEKVAESLRD--DYGFGHTS-DKEVAKKLKVK-PGSVVLFKPFEEEPVEY 81 (97)
T ss_pred HHHHh-ccCCeEEEEEECCCCc---HHHHHHHHHHHhccc--CCeEEEEC-hHHHHHHcCCC-CCceEEeCCcccCCccC
Confidence 44433 6788899999999887 467789999999964 57787655 22222446654 59999998764447889
Q ss_pred eCCCCHHHHHHHHHhc
Q psy7938 262 NGERVLEALSNFVESG 277 (305)
Q Consensus 262 ~g~~~~~~l~~fi~~~ 277 (305)
.|..+.+.|.+||..+
T Consensus 82 ~g~~~~~~l~~fi~~~ 97 (97)
T cd02981 82 DGEFTEESLVEFIKDN 97 (97)
T ss_pred CCCCCHHHHHHHHHhC
Confidence 9998999999999754
No 227
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=97.98 E-value=7.5e-05 Score=65.38 Aligned_cols=104 Identities=16% Similarity=0.257 Sum_probs=73.0
Q ss_pred CcEEecccChhHHHhcCCCcEEEEEECCCChhhhh-----HHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccc
Q psy7938 173 AVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQ-----LAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSF 245 (305)
Q Consensus 173 ~v~~l~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~-----~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~ 245 (305)
.|..|+.+||.+.+ .....++|+||.+--+.-.. |...+-+|+.+.-....+.|+.||..++.. +++++...
T Consensus 35 RVi~LneKNfk~~l-Kkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E~ 113 (383)
T PF01216_consen 35 RVIDLNEKNFKRAL-KKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEEE 113 (383)
T ss_dssp -CEEE-TTTHHHHH-HH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--ST
T ss_pred ceEEcchhHHHHHH-HhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCcccc
Confidence 49999999999977 44667778888876432211 123344566555456789999999988876 89999999
Q ss_pred cEEEEEeCCCceEEeeeCCCCHHHHHHHHHhcCC
Q psy7938 246 PTLKLYAKDDNRVIDYNGERVLEALSNFVESGGK 279 (305)
Q Consensus 246 Ptl~~f~~g~~~~~~~~g~~~~~~l~~fi~~~~~ 279 (305)
+++.+|+.| ..+.|.|.++++-|..||-....
T Consensus 114 ~SiyVfkd~--~~IEydG~~saDtLVeFl~dl~e 145 (383)
T PF01216_consen 114 GSIYVFKDG--EVIEYDGERSADTLVEFLLDLLE 145 (383)
T ss_dssp TEEEEEETT--EEEEE-S--SHHHHHHHHHHHHS
T ss_pred CcEEEEECC--cEEEecCccCHHHHHHHHHHhcc
Confidence 999999998 57999999999999999987654
No 228
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.97 E-value=6.6e-06 Score=67.95 Aligned_cols=130 Identities=12% Similarity=0.056 Sum_probs=68.1
Q ss_pred CCCCeEEEEeeccCceecCCCCCCCChhHHHHHhhhhhcCcccccccccceeeeeccccc-ccCCCCCcchhhhhhhHHH
Q psy7938 4 DEVPSLRLIRLEEDMAKYKPATPEINVDTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMA-KYKPASPEINVDTVRSFVT 82 (305)
Q Consensus 4 ~~~p~i~l~~~~~~~~~~~~~~~~~~~~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 82 (305)
+..|.+.+...+...+.+.. ....-++.++.||++||++|+...|.+.++..... .+...+. -+.+....+++
T Consensus 50 ~~aP~f~l~d~~G~~v~l~~-----~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~-~~~~~~~~~~~ 123 (189)
T TIGR02661 50 DAAPIFNLPDFDGEPVRIGG-----SIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISD-GTPAEHRRFLK 123 (189)
T ss_pred CcCCCcEecCCCCCEEeccc-----hhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeC-CCHHHHHHHHH
Confidence 34566666555554444310 01112568889999999999887776655432211 0111111 11222333333
Q ss_pred HHhhcCceEEEEEEeCCchhHHHHHHHcCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHHHc
Q psy7938 83 EFLAGNLKVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFLA 153 (305)
Q Consensus 83 ~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~~~ 153 (305)
+.. +.+.....+ .++++.||+. +.|+..+++..+.+ .+.. ...+.+.+.+.++....
T Consensus 124 ~~~-----~~~~~~~~~----~~i~~~y~v~--~~P~~~lID~~G~I-~~~g--~~~~~~~le~ll~~l~~ 180 (189)
T TIGR02661 124 DHE-----LGGERYVVS----AEIGMAFQVG--KIPYGVLLDQDGKI-RAKG--LTNTREHLESLLEADRE 180 (189)
T ss_pred hcC-----CCcceeech----hHHHHhccCC--ccceEEEECCCCeE-EEcc--CCCCHHHHHHHHHHHHc
Confidence 221 111111112 4678999998 99999998865442 2321 12355677777766543
No 229
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.97 E-value=9.1e-06 Score=69.07 Aligned_cols=53 Identities=9% Similarity=0.048 Sum_probs=33.4
Q ss_pred CCCCCeEEEEeeccCceecCCCCCCCChhHHHHHhhhhhcCcccccccccceeeeecccc
Q psy7938 3 KDEVPSLRLIRLEEDMAKYKPATPEINVDTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDM 62 (305)
Q Consensus 3 ~~~~p~i~l~~~~~~~~~~~~~~~~~~~~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~ 62 (305)
+...|.+.+...+...+.+. ++ + -+.+|+.|||+||++|+...|.+.++.+.+
T Consensus 76 g~~aPdF~l~d~~G~~vsLs--d~----k-GK~vvl~FwAswCp~c~~e~p~L~~L~~~~ 128 (236)
T PLN02399 76 EKSVHDFTVKDIDGKDVALS--KF----K-GKVLLIVNVASKCGLTSSNYSELSHLYEKY 128 (236)
T ss_pred CCCCCceEEECCCCCEEeHH--Hh----C-CCeEEEEEEcCCCcchHHHHHHHHHHHHHH
Confidence 34466666665555544442 11 1 257889999999999987666555554433
No 230
>KOG0913|consensus
Probab=97.91 E-value=7.1e-06 Score=67.80 Aligned_cols=93 Identities=12% Similarity=0.096 Sum_probs=73.7
Q ss_pred HHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCC
Q psy7938 34 RSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMS 113 (305)
Q Consensus 34 ~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~ 113 (305)
-.|++.|+||||+.|+-+.|.|+.++..-. .-.|.+++||.+ .++.|..+|-+.
T Consensus 40 gewmi~~~ap~~psc~~~~~~~~~~a~~s~------------------------dL~v~va~VDvt--~npgLsGRF~vt 93 (248)
T KOG0913|consen 40 GEWMIEFGAPWCPSCSDLIPHLENFATVSL------------------------DLGVKVAKVDVT--TNPGLSGRFLVT 93 (248)
T ss_pred hHHHHHhcCCCCccccchHHHHhccCCccC------------------------CCceeEEEEEEE--eccccceeeEEE
Confidence 358889999999999988888888844442 135899999999 889999999998
Q ss_pred CCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHHHcCcccc
Q psy7938 114 KDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFLAGNLKQ 158 (305)
Q Consensus 114 ~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~~~~~~~~ 158 (305)
..|||--.+.|. ..+| .|.++.++++.|+...-=..+++
T Consensus 94 --aLptIYHvkDGe-Frry---sgaRdk~dfisf~~~r~w~~i~p 132 (248)
T KOG0913|consen 94 --ALPTIYHVKDGE-FRRY---SGARDKNDFISFEEHREWQSIDP 132 (248)
T ss_pred --ecceEEEeeccc-cccc---cCcccchhHHHHHHhhhhhccCC
Confidence 999988777664 3677 48899999999999874333333
No 231
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.90 E-value=7.7e-07 Score=63.01 Aligned_cols=69 Identities=17% Similarity=0.178 Sum_probs=44.0
Q ss_pred hhHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHH
Q psy7938 30 VDTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEF 109 (305)
Q Consensus 30 ~~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~ 109 (305)
.++.++.++.|+++||++|+.+...+..-.. +.+.. ..++.++.||.+. .......
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~--------------------v~~~~--~~~fv~v~vd~~~--~~~~~~~ 69 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPE--------------------VQEAL--NKNFVLVKVDVDD--EDPNAQF 69 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHH--------------------HHHHH--HHCSEEEEEETTT--HHHHHHH
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHH--------------------HHHHH--HCCEEEEEEEcCC--CChhHHh
Confidence 3567888999999999999877533222211 11111 2567899999983 3333332
Q ss_pred cCCCCCCCCeEEEEec
Q psy7938 110 FGMSKDEVPSLRLIRL 125 (305)
Q Consensus 110 ~~I~~~~~Ptl~~~~~ 125 (305)
.+ . ++|+++++++
T Consensus 70 ~~-~--~~P~~~~ldp 82 (82)
T PF13899_consen 70 DR-Q--GYPTFFFLDP 82 (82)
T ss_dssp HH-C--SSSEEEEEET
T ss_pred CC-c--cCCEEEEeCC
Confidence 33 4 7999999874
No 232
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.90 E-value=5.1e-05 Score=58.45 Aligned_cols=73 Identities=19% Similarity=0.369 Sum_probs=42.2
Q ss_pred CCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc---ccCCcccccEEEEEeCCCceEEeee
Q psy7938 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL---EHTKITSFPTLKLYAKDDNRVIDYN 262 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~---~~~~i~~~Ptl~~f~~g~~~~~~~~ 262 (305)
.+...++.|..+|||.|....|.+.++++..+ .-.+.+...|-..... ...+..++|++++++.+++...++.
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~wg 115 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRWG 115 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEE
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEEc
Confidence 45567888999999999999999999999863 2234444433222222 2367889999999988766454554
No 233
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=97.89 E-value=9e-05 Score=60.27 Aligned_cols=87 Identities=9% Similarity=0.062 Sum_probs=62.7
Q ss_pred CCcEEEEEE-CCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc------------------------------cc
Q psy7938 190 SKHVLVEFY-APWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE------------------------------LE 238 (305)
Q Consensus 190 ~~~~lv~f~-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~------------------------------~~ 238 (305)
++.++|.|| +.||+.|....+.+.++++.+.. .++.++.|..+... .+
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK-LNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 678999999 89999999999999999999964 34555545433211 03
Q ss_pred cCCcc------cccEEEEEeCCCceEEeeeC----CCCHHHHHHHHHhc
Q psy7938 239 HTKIT------SFPTLKLYAKDDNRVIDYNG----ERVLEALSNFVESG 277 (305)
Q Consensus 239 ~~~i~------~~Ptl~~f~~g~~~~~~~~g----~~~~~~l~~fi~~~ 277 (305)
.|++. ..|+.+++++++.....+.+ .++.+.+.+.|++.
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 44554 57899999988876555533 45678888888764
No 234
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.89 E-value=9.2e-05 Score=55.49 Aligned_cols=72 Identities=24% Similarity=0.313 Sum_probs=56.4
Q ss_pred hhhhhHHH-HHhhcC-ceEEEEEEeCCchhHHHHHHHcCCCCCC--CCeEEEEecCcCceeccCCCCCC-CHHHHHHHHH
Q psy7938 75 DTVRSFVT-EFLAGN-LKVLFVTINTDEEDHQKILEFFGMSKDE--VPSLRLIRLEEDMAKYKPATPEI-SVDTVRSFVT 149 (305)
Q Consensus 75 ~~~~~~~~-~~~~~~-~~v~~~~vd~~~~~~~~l~~~~~I~~~~--~Ptl~~~~~~~~~~~~~~~~~~~-~~~~l~~fv~ 149 (305)
+++++.+. .+++++ +++.|+.+|.+ ++...++.||++..+ .|++++++.. . .+|... +.. +.++|++|++
T Consensus 34 ~~~~~~~~~vAk~fk~gki~Fv~~D~~--~~~~~l~~fgl~~~~~~~P~~~i~~~~-~-~KY~~~-~~~~t~e~i~~F~~ 108 (111)
T cd03073 34 NYWRNRVLKVAKDFPDRKLNFAVADKE--DFSHELEEFGLDFSGGEKPVVAIRTAK-G-KKYVME-EEFSDVDALEEFLE 108 (111)
T ss_pred HHHHHHHHHHHHHCcCCeEEEEEEcHH--HHHHHHHHcCCCcccCCCCEEEEEeCC-C-CccCCC-cccCCHHHHHHHHH
Confidence 44444443 447888 79999999999 777789999998555 9999998864 3 688653 567 9999999999
Q ss_pred HH
Q psy7938 150 EF 151 (305)
Q Consensus 150 ~~ 151 (305)
++
T Consensus 109 ~f 110 (111)
T cd03073 109 DF 110 (111)
T ss_pred Hh
Confidence 86
No 235
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.88 E-value=7.7e-05 Score=58.70 Aligned_cols=45 Identities=16% Similarity=0.246 Sum_probs=34.1
Q ss_pred CcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc
Q psy7938 191 KHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE 236 (305)
Q Consensus 191 ~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~ 236 (305)
..++++|++.||+.|+...+.+.++...+.. .++.++.|..+...
T Consensus 25 ~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~-~~v~vv~V~~~~~~ 69 (149)
T cd02970 25 PVVVVFYRGFGCPFCREYLRALSKLLPELDA-LGVELVAVGPESPE 69 (149)
T ss_pred CEEEEEECCCCChhHHHHHHHHHHHHHHHHh-cCeEEEEEeCCCHH
Confidence 3445555699999999999999999999963 35777777665443
No 236
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.87 E-value=1e-05 Score=75.69 Aligned_cols=90 Identities=12% Similarity=0.106 Sum_probs=64.7
Q ss_pred HHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCc--hhHHHHHHHcC
Q psy7938 34 RSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDE--EDHQKILEFFG 111 (305)
Q Consensus 34 ~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~~~l~~~~~ 111 (305)
+++++||||+||-.|+.+.+....- . +...+. ..+...++|.+. ++..++..+||
T Consensus 475 ~pVmlDfyAdWCvtCK~~e~~tfsd-~---------------------~v~~~~-~~~vlLqaDvT~~~p~~~~lLk~~~ 531 (569)
T COG4232 475 KPVMLDFYADWCVTCKENEKYTFSD-P---------------------QVQQAL-QDVVLLQADVTANDPAITALLKRLG 531 (569)
T ss_pred CcEEEeeehhHHHHhHhhhhhccCc-H---------------------HHHHhc-CCeEEEEeeecCCCHHHHHHHHHcC
Confidence 3899999999999998775433321 1 111222 347789999773 46677899999
Q ss_pred CCCCCCCeEEEEecCc-CceeccCCCCCCCHHHHHHHHHHH
Q psy7938 112 MSKDEVPSLRLIRLEE-DMAKYKPATPEISVDTVRSFVTEF 151 (305)
Q Consensus 112 I~~~~~Ptl~~~~~~~-~~~~~~~~~~~~~~~~l~~fv~~~ 151 (305)
+- +.|++++|+.++ +.... .|.++.+.+.+++++.
T Consensus 532 ~~--G~P~~~ff~~~g~e~~~l---~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 532 VF--GVPTYLFFGPQGSEPEIL---TGFLTADAFLEHLERA 567 (569)
T ss_pred CC--CCCEEEEECCCCCcCcCC---cceecHHHHHHHHHHh
Confidence 98 999999999543 32232 3678999999998875
No 237
>KOG0911|consensus
Probab=97.86 E-value=2.4e-05 Score=64.47 Aligned_cols=72 Identities=18% Similarity=0.274 Sum_probs=58.1
Q ss_pred HHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcC
Q psy7938 32 TVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFG 111 (305)
Q Consensus 32 ~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~ 111 (305)
..+.++..|||+||.+|+++...+..+++.. ..+.|++++.+ ++..+++.+.
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~--------------------------~~~~~~k~~a~--~~~eis~~~~ 67 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF--------------------------KNAQFLKLEAE--EFPEISNLIA 67 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh--------------------------hhheeeeehhh--hhhHHHHHHH
Confidence 4567788999999999998876666663322 45789999999 9999999999
Q ss_pred CCCCCCCeEEEEecCcCceecc
Q psy7938 112 MSKDEVPSLRLIRLEEDMAKYK 133 (305)
Q Consensus 112 I~~~~~Ptl~~~~~~~~~~~~~ 133 (305)
|. ..|.++++..+..+.+..
T Consensus 68 v~--~vp~~~~~~~~~~v~~l~ 87 (227)
T KOG0911|consen 68 VE--AVPYFVFFFLGEKVDRLS 87 (227)
T ss_pred Hh--cCceeeeeecchhhhhhh
Confidence 98 999999998877666663
No 238
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.85 E-value=0.00014 Score=61.99 Aligned_cols=86 Identities=16% Similarity=0.150 Sum_probs=65.1
Q ss_pred CCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc-----------cccCCcccccEEEEEeCCCce-
Q psy7938 190 SKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE-----------LEHTKITSFPTLKLYAKDDNR- 257 (305)
Q Consensus 190 ~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~-----------~~~~~i~~~Ptl~~f~~g~~~- 257 (305)
+..-|++||.+.|++|..+.|.++.+++.+. -.|.-+.+|..... ...++|..+|++++...+...
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg--~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG--LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 4578999999999999999999999999993 24555556543221 157899999999999987654
Q ss_pred EEeeeCCCCHHHHHHHHHhc
Q psy7938 258 VIDYNGERVLEALSNFVESG 277 (305)
Q Consensus 258 ~~~~~g~~~~~~l~~fi~~~ 277 (305)
.-.-.|..+.++|.+=|...
T Consensus 221 ~pv~~G~iS~deL~~Ri~~v 240 (248)
T PRK13703 221 RPLSYGFITQDDLAKRFLNV 240 (248)
T ss_pred EEEeeccCCHHHHHHHHHHH
Confidence 33456888888887655543
No 239
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.84 E-value=7.7e-06 Score=56.04 Aligned_cols=69 Identities=12% Similarity=0.212 Sum_probs=46.0
Q ss_pred hhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCch--hHHHHHHHcCCCCC
Q psy7938 38 TEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEE--DHQKILEFFGMSKD 115 (305)
Q Consensus 38 v~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~--~~~~l~~~~~I~~~ 115 (305)
.-|+++||++|+...+.+.+. .+.+..+|.+.. ...++++.+|+.
T Consensus 3 ~lf~~~~C~~C~~~~~~l~~~-------------------------------~i~~~~vdi~~~~~~~~~~~~~~~~~-- 49 (74)
T TIGR02196 3 KVYTTPWCPPCKKAKEYLTSK-------------------------------GIAFEEIDVEKDSAAREEVLKVLGQR-- 49 (74)
T ss_pred EEEcCCCChhHHHHHHHHHHC-------------------------------CCeEEEEeccCCHHHHHHHHHHhCCC--
Confidence 458999999998765443322 366777887732 224467889997
Q ss_pred CCCeEEEEecCcCceeccCCCCCCCHHHHHHHH
Q psy7938 116 EVPSLRLIRLEEDMAKYKPATPEISVDTVRSFV 148 (305)
Q Consensus 116 ~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv 148 (305)
++|++.+. | ... .+.+.+.|.+++
T Consensus 50 ~vP~~~~~--~---~~~----~g~~~~~i~~~i 73 (74)
T TIGR02196 50 GVPVIVIG--H---KII----VGFDPEKLDQLL 73 (74)
T ss_pred cccEEEEC--C---EEE----eeCCHHHHHHHh
Confidence 99999874 3 123 125677887775
No 240
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.83 E-value=6.9e-05 Score=56.51 Aligned_cols=73 Identities=19% Similarity=0.464 Sum_probs=47.2
Q ss_pred cChhHHHh---cCCCcEEEEEECC-------CChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCc--------ccc---c
Q psy7938 180 SNFDEIAF---DKSKHVLVEFYAP-------WCGHCKQLAPIYDKLGEKFADRDDITIAKIDATV--------NEL---E 238 (305)
Q Consensus 180 ~~f~~~v~---~~~~~~lv~f~~~-------~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~--------~~~---~ 238 (305)
++|.+.+. +++++++|+|+++ ||+.|....|.+++.-..... +..++.+.... |.. .
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~--~~~lv~v~VG~r~~Wkdp~n~fR~~p 83 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE--NARLVYVEVGDRPEWKDPNNPFRTDP 83 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST--TEEEEEEE---HHHHC-TTSHHHH--
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC--CceEEEEEcCCHHHhCCCCCCceEcc
Confidence 44555553 3567899999855 999999999999998887643 55555554422 222 2
Q ss_pred cCCcccccEEEEEeCC
Q psy7938 239 HTKITSFPTLKLYAKD 254 (305)
Q Consensus 239 ~~~i~~~Ptl~~f~~g 254 (305)
.++++++||++-+..+
T Consensus 84 ~~~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 84 DLKLKGIPTLIRWETG 99 (119)
T ss_dssp CC---SSSEEEECTSS
T ss_pred eeeeeecceEEEECCC
Confidence 5899999999999877
No 241
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.80 E-value=0.0002 Score=57.86 Aligned_cols=84 Identities=10% Similarity=0.118 Sum_probs=57.0
Q ss_pred CCCcEEEEEECCC-ChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc-------------------------cccCCc
Q psy7938 189 KSKHVLVEFYAPW-CGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE-------------------------LEHTKI 242 (305)
Q Consensus 189 ~~~~~lv~f~~~~-C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~-------------------------~~~~~i 242 (305)
.++.++|.||++| |++|....+.+.++++.+. ++.++.|..+... .+.|++
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv 119 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD---NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGV 119 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCC
Confidence 3679999999999 9999999999999998873 4555544443211 144566
Q ss_pred cccc---------EEEEEeCCCceEEeeeC-----CCCHHHHHHHHH
Q psy7938 243 TSFP---------TLKLYAKDDNRVIDYNG-----ERVLEALSNFVE 275 (305)
Q Consensus 243 ~~~P---------tl~~f~~g~~~~~~~~g-----~~~~~~l~~fi~ 275 (305)
...| +.+++.+++.....+.+ ....+.+.++|+
T Consensus 120 ~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~ 166 (167)
T PRK00522 120 AIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAALK 166 (167)
T ss_pred eecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhh
Confidence 6666 88888877765444422 335666666654
No 242
>KOG1672|consensus
Probab=97.79 E-value=0.00012 Score=58.84 Aligned_cols=100 Identities=22% Similarity=0.329 Sum_probs=79.0
Q ss_pred CcEEec-ccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEE
Q psy7938 173 AVKVLV-ASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLK 249 (305)
Q Consensus 173 ~v~~l~-~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~ 249 (305)
...++. ..+|-+.+. ...-|++.||-+.-..|+-|-..++.||..+- ...|++||+...+. .+++|.-+|+++
T Consensus 67 ~y~ev~~Ekdf~~~~~-kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~---eTrFikvnae~~PFlv~kL~IkVLP~v~ 142 (211)
T KOG1672|consen 67 EYEEVASEKDFFEEVK-KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHV---ETRFIKVNAEKAPFLVTKLNIKVLPTVA 142 (211)
T ss_pred eEEEeccHHHHHHHhh-cCceEEEEEEcCCCcceehHHHHHHHHHHhcc---cceEEEEecccCceeeeeeeeeEeeeEE
Confidence 466664 577877773 46678999999999999999999999999984 57899999998886 899999999999
Q ss_pred EEeCCCceEEeeeC--------CCCHHHHHHHHHhc
Q psy7938 250 LYAKDDNRVIDYNG--------ERVLEALSNFVESG 277 (305)
Q Consensus 250 ~f~~g~~~~~~~~g--------~~~~~~l~~fi~~~ 277 (305)
+|++|.. ...+.| ..+.+.|..-|.+.
T Consensus 143 l~k~g~~-~D~iVGF~dLGnkDdF~te~LE~rL~~S 177 (211)
T KOG1672|consen 143 LFKNGKT-VDYVVGFTDLGNKDDFTTETLENRLAKS 177 (211)
T ss_pred EEEcCEE-EEEEeeHhhcCCCCcCcHHHHHHHHhhc
Confidence 9999965 555555 23455555555543
No 243
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.78 E-value=4.1e-05 Score=54.08 Aligned_cols=53 Identities=26% Similarity=0.458 Sum_probs=40.1
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc------c-ccCCcccccEEEE
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE------L-EHTKITSFPTLKL 250 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~------~-~~~~i~~~Ptl~~ 250 (305)
++.|+++||++|+.+.+.+.+++ .. ..+.+..+|.+.+. . +..++.++|++++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~--~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i 60 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK--PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI 60 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC--CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence 47899999999999999999986 32 24677777765433 2 4468889999854
No 244
>KOG2603|consensus
Probab=97.77 E-value=0.00015 Score=62.63 Aligned_cols=112 Identities=14% Similarity=0.240 Sum_probs=85.8
Q ss_pred cCCcEEecccChhHHHhcCCC--cEEEEEECC----CChhhhhHHHHHHHHHHHhCCC------CceEEEEEeCCcccc-
Q psy7938 171 KNAVKVLVASNFDEIAFDKSK--HVLVEFYAP----WCGHCKQLAPIYDKLGEKFADR------DDITIAKIDATVNEL- 237 (305)
Q Consensus 171 ~~~v~~l~~~~f~~~v~~~~~--~~lv~f~~~----~C~~C~~~~~~~~~la~~~~~~------~~v~~~~id~~~~~~- 237 (305)
...|..++++.|.+++....+ .++|+|.|. .|.-|+.....+.-+|+.+..+ .++-|+.||.++.+.
T Consensus 39 ~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~ 118 (331)
T KOG2603|consen 39 ESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQV 118 (331)
T ss_pred CCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHH
Confidence 345999999999999964433 588888875 4999999999999999998542 268899999888665
Q ss_pred -ccCCcccccEEEEEeCCCce---EEeeeC---CCCHHHHHHHHHhcCCCCC
Q psy7938 238 -EHTKITSFPTLKLYAKDDNR---VIDYNG---ERVLEALSNFVESGGKEGG 282 (305)
Q Consensus 238 -~~~~i~~~Ptl~~f~~g~~~---~~~~~g---~~~~~~l~~fi~~~~~~~~ 282 (305)
+.+++...|++++|++.... ...+.+ ...++.+.+|++..++...
T Consensus 119 Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v 170 (331)
T KOG2603|consen 119 FQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNV 170 (331)
T ss_pred HHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhhee
Confidence 99999999999999544221 222222 4458999999998876443
No 245
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.71 E-value=0.00026 Score=58.35 Aligned_cols=87 Identities=8% Similarity=-0.006 Sum_probs=59.9
Q ss_pred CCcEEEEEE-CCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcc--------------------------c-cccCC
Q psy7938 190 SKHVLVEFY-APWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVN--------------------------E-LEHTK 241 (305)
Q Consensus 190 ~~~~lv~f~-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~--------------------------~-~~~~~ 241 (305)
++.++|.|| +.||+.|....+.+.++...++.. ++.++.|..+.. . .+.|+
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~-gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKL-GVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 678999999 999999999999999999998643 344443333221 0 14556
Q ss_pred cc------cccEEEEEeCCCceEEeeeC----CCCHHHHHHHHHhc
Q psy7938 242 IT------SFPTLKLYAKDDNRVIDYNG----ERVLEALSNFVESG 277 (305)
Q Consensus 242 i~------~~Ptl~~f~~g~~~~~~~~g----~~~~~~l~~fi~~~ 277 (305)
+. ..|+.+++.+++.....+.+ .++.+.+.+.|+..
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~ 155 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAA 155 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 64 46999999877765433322 45788888877543
No 246
>KOG2501|consensus
Probab=97.70 E-value=2.8e-05 Score=60.91 Aligned_cols=86 Identities=15% Similarity=0.148 Sum_probs=46.0
Q ss_pred HHhhhhhcCcccccccccceeeeecccccccCCCCCcchhh-----hhhhHHHHH-hhcCceEEEEEEeCCchhHHHHHH
Q psy7938 35 SFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVD-----TVRSFVTEF-LAGNLKVLFVTINTDEEDHQKILE 108 (305)
Q Consensus 35 ~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~v~~~~vd~~~~~~~~l~~ 108 (305)
-+...|.|.||+|||.+.|.+...=+.++ .++.++.+- .-..-+.++ ....+....+-..-+ ...++++
T Consensus 35 vV~lyFsA~wC~pCR~FTP~Lk~fYe~l~---~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~--~~~~l~~ 109 (157)
T KOG2501|consen 35 VVGLYFSAHWCPPCRDFTPILKDFYEELK---DNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDD--LIQKLSE 109 (157)
T ss_pred EEEEEEEEEECCchhhCCchHHHHHHHHH---hcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCH--HHHHHHH
Confidence 34446999999999999886655522221 111111100 000011111 111222222222222 4467999
Q ss_pred HcCCCCCCCCeEEEEecCc
Q psy7938 109 FFGMSKDEVPSLRLIRLEE 127 (305)
Q Consensus 109 ~~~I~~~~~Ptl~~~~~~~ 127 (305)
.|+|. ++|++++.+..+
T Consensus 110 ky~v~--~iP~l~i~~~dG 126 (157)
T KOG2501|consen 110 KYEVK--GIPALVILKPDG 126 (157)
T ss_pred hcccC--cCceeEEecCCC
Confidence 99998 999999998764
No 247
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.69 E-value=0.00029 Score=55.98 Aligned_cols=80 Identities=15% Similarity=0.111 Sum_probs=55.8
Q ss_pred CCCcEEEEEECC-CChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc-----------------------cccCCccc
Q psy7938 189 KSKHVLVEFYAP-WCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE-----------------------LEHTKITS 244 (305)
Q Consensus 189 ~~~~~lv~f~~~-~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~-----------------------~~~~~i~~ 244 (305)
.++.++|.||+. ||+.|....+.+.++.+.+++ .++.++.|..+... .+.|++..
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~-~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 107 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK-AGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWG 107 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCc
Confidence 467899999976 688899999999999999864 34666666554322 13445543
Q ss_pred c------------cEEEEEeCCCceEEeeeCCCCHHH
Q psy7938 245 F------------PTLKLYAKDDNRVIDYNGERVLEA 269 (305)
Q Consensus 245 ~------------Ptl~~f~~g~~~~~~~~g~~~~~~ 269 (305)
. |+.+++++++.....|.|....+.
T Consensus 108 ~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~ 144 (154)
T PRK09437 108 EKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNH 144 (154)
T ss_pred ccccccccccCcceEEEEECCCCEEEEEEcCCCcchh
Confidence 3 677888877776777888544444
No 248
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.68 E-value=1.5e-05 Score=55.24 Aligned_cols=22 Identities=9% Similarity=-0.165 Sum_probs=17.2
Q ss_pred hhhhhcCcccccccccceeeee
Q psy7938 37 VTEFLAGNLKHSKFKKNLYIHL 58 (305)
Q Consensus 37 iv~f~a~wc~~c~~~~p~~~~~ 58 (305)
|+-|+++||++|+.+++++.+.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~ 23 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL 23 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc
Confidence 3468999999999887766555
No 249
>KOG3425|consensus
Probab=97.68 E-value=0.00029 Score=52.14 Aligned_cols=73 Identities=21% Similarity=0.478 Sum_probs=53.7
Q ss_pred cChhHHHh--cCCCcEEEEEEC--------CCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc---------ccC
Q psy7938 180 SNFDEIAF--DKSKHVLVEFYA--------PWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL---------EHT 240 (305)
Q Consensus 180 ~~f~~~v~--~~~~~~lv~f~~--------~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~---------~~~ 240 (305)
++|.+.+. .+++.++|.|++ +||+.|.+..|.+.+.-+... .++.|+.++...-+. ...
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap--~~~~~v~v~VG~rp~Wk~p~n~FR~d~ 90 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP--EDVHFVHVYVGNRPYWKDPANPFRKDP 90 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC--CceEEEEEEecCCCcccCCCCccccCC
Confidence 44555542 244558899985 499999999999999888664 478888888765442 445
Q ss_pred Cc-ccccEEEEEeCC
Q psy7938 241 KI-TSFPTLKLYAKD 254 (305)
Q Consensus 241 ~i-~~~Ptl~~f~~g 254 (305)
++ +++||++=|+++
T Consensus 91 ~~lt~vPTLlrw~~~ 105 (128)
T KOG3425|consen 91 GILTAVPTLLRWKRQ 105 (128)
T ss_pred CceeecceeeEEcCc
Confidence 55 999999999863
No 250
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.66 E-value=0.00011 Score=58.39 Aligned_cols=74 Identities=14% Similarity=0.316 Sum_probs=47.8
Q ss_pred cChhHHHhcCCCcEEEEEECCCChhhhhHHH-HH--HHHHHHhCCCCceEEEEEeCCcccc--ccC--------Cccccc
Q psy7938 180 SNFDEIAFDKSKHVLVEFYAPWCGHCKQLAP-IY--DKLGEKFADRDDITIAKIDATVNEL--EHT--------KITSFP 246 (305)
Q Consensus 180 ~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~-~~--~~la~~~~~~~~v~~~~id~~~~~~--~~~--------~i~~~P 246 (305)
+.|+. ....+|+++|.++.+||..|..|.. .| .++|+.+ +.+++-+++|.++.+. ..| +..+.|
T Consensus 28 ea~~~-Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~l--N~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwP 104 (163)
T PF03190_consen 28 EALEK-AKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYL--NRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWP 104 (163)
T ss_dssp HHHHH-HHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHH--HHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SS
T ss_pred HHHHH-HHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHH--hCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCC
Confidence 34444 3467899999999999999999975 33 5677777 3478999999988654 333 677999
Q ss_pred EEEEEeCCCc
Q psy7938 247 TLKLYAKDDN 256 (305)
Q Consensus 247 tl~~f~~g~~ 256 (305)
+.++..++++
T Consensus 105 l~vfltPdg~ 114 (163)
T PF03190_consen 105 LTVFLTPDGK 114 (163)
T ss_dssp EEEEE-TTS-
T ss_pred ceEEECCCCC
Confidence 9999998876
No 251
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.66 E-value=2.2e-05 Score=51.42 Aligned_cols=60 Identities=18% Similarity=0.239 Sum_probs=43.4
Q ss_pred hhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHH---HHcCCC
Q psy7938 37 VTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKIL---EFFGMS 113 (305)
Q Consensus 37 iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~---~~~~I~ 113 (305)
|+.|+++||++|..+.+.+.++ ......+.+..+|++ ...... ..+++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 52 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--------------------------ALLNKGVKFEAVDVD--EDPALEKELKRYGVG 52 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--------------------------HhhCCCcEEEEEEcC--CChHHhhHHHhCCCc
Confidence 3468999999998776555544 111356889999998 434433 378887
Q ss_pred CCCCCeEEEEecC
Q psy7938 114 KDEVPSLRLIRLE 126 (305)
Q Consensus 114 ~~~~Ptl~~~~~~ 126 (305)
++|++++++.+
T Consensus 53 --~~P~~~~~~~~ 63 (69)
T cd01659 53 --GVPTLVVFGPG 63 (69)
T ss_pred --cccEEEEEeCC
Confidence 99999999876
No 252
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=97.66 E-value=7.8e-06 Score=64.43 Aligned_cols=111 Identities=17% Similarity=0.239 Sum_probs=62.4
Q ss_pred CCCCCeEEEEe--eccCceecCCCCCCCChhHHHHHhhhhhcC-cccccccccceeeeeccccccc----CCCCCcchhh
Q psy7938 3 KDEVPSLRLIR--LEEDMAKYKPATPEINVDTVRSFVTEFLAG-NLKHSKFKKNLYIHLEEDMAKY----KPASPEINVD 75 (305)
Q Consensus 3 ~~~~p~i~l~~--~~~~~~~~~~~~~~~~~~~~~~~iv~f~a~-wc~~c~~~~p~~~~~~~~~~~~----~~~~~~~~~~ 75 (305)
|+.+|.+.+.. .+...+.+. + -.-+..++.||++ ||++|+...|.+.++.+.++.- ...+...+ .
T Consensus 3 G~~~P~~~~~~~~~~g~~~~l~--~-----~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~-~ 74 (146)
T PF08534_consen 3 GDKAPDFSLKDLDLDGKPVSLS--D-----FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDD-P 74 (146)
T ss_dssp TSB--CCEEEEEETTSEEEEGG--G-----GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSS-H
T ss_pred CCCCCCeEEEeecCCCCEecHH--H-----hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCC-H
Confidence 56789999865 556666562 1 1235678899999 9999988887666664332210 00000000 1
Q ss_pred hhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCC--CC-----CCCeEEEEecCcCc
Q psy7938 76 TVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMS--KD-----EVPSLRLIRLEEDM 129 (305)
Q Consensus 76 ~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~--~~-----~~Ptl~~~~~~~~~ 129 (305)
.+..++.+ ....+.+ ..|.+ ..+.+.||+. .. ++|++++++..+.+
T Consensus 75 ~~~~~~~~---~~~~~~~-~~D~~----~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V 127 (146)
T PF08534_consen 75 PVREFLKK---YGINFPV-LSDPD----GALAKALGVTIMEDPGNGFGIPTTFLIDKDGKV 127 (146)
T ss_dssp HHHHHHHH---TTTTSEE-EEETT----SHHHHHTTCEEECCTTTTSSSSEEEEEETTSBE
T ss_pred HHHHHHHh---hCCCceE-EechH----HHHHHHhCCccccccccCCeecEEEEEECCCEE
Confidence 12222322 2223433 44533 5788999973 11 79999999876653
No 253
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.66 E-value=0.00042 Score=51.94 Aligned_cols=100 Identities=15% Similarity=0.167 Sum_probs=74.2
Q ss_pred cEEecccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHH---hCCCCceEEEEEeCCcccc--ccCCccc--cc
Q psy7938 174 VKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEK---FADRDDITIAKIDATVNEL--EHTKITS--FP 246 (305)
Q Consensus 174 v~~l~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~---~~~~~~v~~~~id~~~~~~--~~~~i~~--~P 246 (305)
|++++.+++..+. .++.+..+.|+++ ..-..+...+.++|+. ++ +++.|+.+|.+.... +.+|++. +|
T Consensus 1 ~~e~t~e~~~~~~-~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~k--gki~Fv~~d~~~~~~~~~~fgl~~~~~P 75 (111)
T cd03072 1 VREITFENAEELT-EEGLPFLILFHDK--DDLESLKEFKQAVARQLISEK--GAINFLTADGDKFRHPLLHLGKTPADLP 75 (111)
T ss_pred CcccccccHHHHh-cCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcC--ceEEEEEEechHhhhHHHHcCCCHhHCC
Confidence 5677888887665 4555655566632 2336788999999999 85 469999999887653 8889886 99
Q ss_pred EEEEEeCCCceEEe-eeCCCCHHHHHHHHHhcC
Q psy7938 247 TLKLYAKDDNRVID-YNGERVLEALSNFVESGG 278 (305)
Q Consensus 247 tl~~f~~g~~~~~~-~~g~~~~~~l~~fi~~~~ 278 (305)
.+.+...++..... +.+..+.++|.+|+.+-.
T Consensus 76 ~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~ 108 (111)
T cd03072 76 VIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLH 108 (111)
T ss_pred EEEEEcchhcCcCCCCccccCHHHHHHHHHHHh
Confidence 99999865422333 668889999999998754
No 254
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.64 E-value=0.0002 Score=55.95 Aligned_cols=45 Identities=22% Similarity=0.318 Sum_probs=37.1
Q ss_pred CCCcEEEEEECCCChh-hhhHHHHHHHHHHHhCCCC--ceEEEEEeCC
Q psy7938 189 KSKHVLVEFYAPWCGH-CKQLAPIYDKLGEKFADRD--DITIAKIDAT 233 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~-C~~~~~~~~~la~~~~~~~--~v~~~~id~~ 233 (305)
.++.++|.||++||++ |....+.+.++...++..+ ++.++.|..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 4789999999999998 9999999999999997542 4766666554
No 255
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.62 E-value=0.00033 Score=49.75 Aligned_cols=75 Identities=20% Similarity=0.356 Sum_probs=52.5
Q ss_pred EEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc-----c---ccCCcccccEEEEEeCCCceEEeeeCC
Q psy7938 193 VLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE-----L---EHTKITSFPTLKLYAKDDNRVIDYNGE 264 (305)
Q Consensus 193 ~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~-----~---~~~~i~~~Ptl~~f~~g~~~~~~~~g~ 264 (305)
-++.|+.+||++|++....+++++..+ .++.+..+|.+.+. . ...++..+|++++ +|.. . |
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~---~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~-i----g- 70 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEER---DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKH-I----G- 70 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccc---cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEE-E----c-
Confidence 367899999999999999999998765 25667777776542 2 2234578999864 4532 1 2
Q ss_pred CCHHHHHHHHHhcCC
Q psy7938 265 RVLEALSNFVESGGK 279 (305)
Q Consensus 265 ~~~~~l~~fi~~~~~ 279 (305)
..++|.++++.+.+
T Consensus 71 -g~~~~~~~~~~~~~ 84 (85)
T PRK11200 71 -GCTDFEAYVKENLG 84 (85)
T ss_pred -CHHHHHHHHHHhcc
Confidence 34678888777653
No 256
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.55 E-value=2.2e-05 Score=58.23 Aligned_cols=68 Identities=21% Similarity=0.314 Sum_probs=51.0
Q ss_pred HHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcC-
Q psy7938 33 VRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFG- 111 (305)
Q Consensus 33 ~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~- 111 (305)
...+++.||++||++|+...|.+.++.. .+...+.+..+|..+ ....+...++
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~-------------------------~~~~~~~~~~i~~~~-~~~~~~~~~~~ 85 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAE-------------------------EYGGDVEVVAVNVDD-ENPDLAAEFGV 85 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHH-------------------------HhcCCcEEEEEECCC-CChHHHHHHhh
Confidence 4566778899999999988877777733 323367888888841 3567888898
Q ss_pred -CCCCCCCeEEEEecCcC
Q psy7938 112 -MSKDEVPSLRLIRLEED 128 (305)
Q Consensus 112 -I~~~~~Ptl~~~~~~~~ 128 (305)
+. .+|++.++..+..
T Consensus 86 ~~~--~~p~~~~~~~~~~ 101 (127)
T COG0526 86 AVR--SIPTLLLFKDGKE 101 (127)
T ss_pred hhc--cCCeEEEEeCcch
Confidence 76 8899998887754
No 257
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.54 E-value=2.6e-05 Score=59.88 Aligned_cols=85 Identities=18% Similarity=0.203 Sum_probs=48.8
Q ss_pred HHHhhhhhcCcccccccccceeeeecccccc----cCCC-CC----cchhhhhhhHHHHHhhcCceEEEEEEeCCchhHH
Q psy7938 34 RSFVTEFLAGNLKHSKFKKNLYIHLEEDMAK----YKPA-SP----EINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQ 104 (305)
Q Consensus 34 ~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~----~~~~-~~----~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~ 104 (305)
+..|+.||++||++|+...|.+.++...++. +..- .. +.+.+.+..++. +++ +.|-.+ .| ...
T Consensus 24 k~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~---~~~--~~~p~~-~D--~~~ 95 (126)
T cd03012 24 KVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVL---RYG--ITYPVA-ND--NDY 95 (126)
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHH---HcC--CCCCEE-EC--Cch
Confidence 5678899999999998776666555444432 1100 11 112222222222 211 222222 23 336
Q ss_pred HHHHHcCCCCCCCCeEEEEecCcC
Q psy7938 105 KILEFFGMSKDEVPSLRLIRLEED 128 (305)
Q Consensus 105 ~l~~~~~I~~~~~Ptl~~~~~~~~ 128 (305)
.++..|++. ++|+.++++..+.
T Consensus 96 ~~~~~~~v~--~~P~~~vid~~G~ 117 (126)
T cd03012 96 ATWRAYGNQ--YWPALYLIDPTGN 117 (126)
T ss_pred HHHHHhCCC--cCCeEEEECCCCc
Confidence 788999998 9999999986544
No 258
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.53 E-value=0.0001 Score=59.74 Aligned_cols=135 Identities=13% Similarity=0.253 Sum_probs=72.0
Q ss_pred CCCCeEEEEeeccCceecCCCCCCCChhHHHHHhhhhhcCcccccccccceeeeecccccc----cCCCC-Cc------c
Q psy7938 4 DEVPSLRLIRLEEDMAKYKPATPEINVDTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAK----YKPAS-PE------I 72 (305)
Q Consensus 4 ~~~p~i~l~~~~~~~~~~~~~~~~~~~~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~----~~~~~-~~------~ 72 (305)
...|.+.+...+.+.+.+. ++ ...+..|+.||++||+.|....+.+.++...+.. +..-+ +. -
T Consensus 2 ~~~p~f~l~~~~g~~v~l~--~~----~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d 75 (171)
T cd02969 2 SPAPDFSLPDTDGKTYSLA--DF----ADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPED 75 (171)
T ss_pred CcCCCccccCCCCCEEeHH--HH----hCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccc
Confidence 4456666655444433331 11 1124578889999999997655544444333321 00000 00 1
Q ss_pred hhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCCCCCCCeEEEEecCcCceeccC--C------CCCCCHHHH
Q psy7938 73 NVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKP--A------TPEISVDTV 144 (305)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~~~--~------~~~~~~~~l 144 (305)
+.+.+..++.+. .-...++ .|. ...++..|||. ..|++++++.++.+. |.. . .+..+..++
T Consensus 76 ~~~~~~~~~~~~---~~~~~~l-~D~----~~~~~~~~~v~--~~P~~~lid~~G~v~-~~~~~~~~~~~~~~~~~~~~~ 144 (171)
T cd02969 76 SPENMKAKAKEH---GYPFPYL-LDE----TQEVAKAYGAA--CTPDFFLFDPDGKLV-YRGRIDDSRPGNDPPVTGRDL 144 (171)
T ss_pred CHHHHHHHHHHC---CCCceEE-ECC----chHHHHHcCCC--cCCcEEEECCCCeEE-EeecccCCcccccccccHHHH
Confidence 122223323222 2222222 232 25788999998 899999998765532 321 1 123466889
Q ss_pred HHHHHHHHcCc
Q psy7938 145 RSFVTEFLAGN 155 (305)
Q Consensus 145 ~~fv~~~~~~~ 155 (305)
.+-|...+.+.
T Consensus 145 ~~~i~~~l~~~ 155 (171)
T cd02969 145 RAALDALLAGK 155 (171)
T ss_pred HHHHHHHHcCC
Confidence 99999988764
No 259
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.52 E-value=0.00065 Score=53.20 Aligned_cols=72 Identities=8% Similarity=0.082 Sum_probs=50.6
Q ss_pred CCCcEEEEEECCC-ChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc----------------------c---ccCCc
Q psy7938 189 KSKHVLVEFYAPW-CGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE----------------------L---EHTKI 242 (305)
Q Consensus 189 ~~~~~lv~f~~~~-C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~----------------------~---~~~~i 242 (305)
.++.++|.||+.| |++|+...+.+.++.++++ ++.++.|+.+... . +.|++
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv 101 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD---NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGV 101 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCC
Confidence 3678999999998 6999999999999999974 4666666654221 0 23444
Q ss_pred cc------ccEEEEEeCCCceEEeeeC
Q psy7938 243 TS------FPTLKLYAKDDNRVIDYNG 263 (305)
Q Consensus 243 ~~------~Ptl~~f~~g~~~~~~~~g 263 (305)
.. .|+.+++.+++.....+.|
T Consensus 102 ~~~~~~~~~~~~~iid~~G~I~~~~~~ 128 (143)
T cd03014 102 LIKDLGLLARAVFVIDENGKVIYVELV 128 (143)
T ss_pred eeccCCccceEEEEEcCCCeEEEEEEC
Confidence 32 5888888877765444443
No 260
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.51 E-value=0.00052 Score=53.37 Aligned_cols=44 Identities=23% Similarity=0.412 Sum_probs=35.3
Q ss_pred CCCcEEEEEE-CCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCC
Q psy7938 189 KSKHVLVEFY-APWCGHCKQLAPIYDKLGEKFADRDDITIAKIDAT 233 (305)
Q Consensus 189 ~~~~~lv~f~-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~ 233 (305)
.+++++|.|| +.||+.|....+.+.++...++. .++.++.|..+
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~~~~i~is~d 65 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAK-GGAEVLGVSVD 65 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEeCC
Confidence 4788999999 78999999999999999999853 35666655544
No 261
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.49 E-value=0.00075 Score=56.30 Aligned_cols=88 Identities=9% Similarity=0.092 Sum_probs=60.8
Q ss_pred CCcEE-EEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcc------------------c-----------ccc
Q psy7938 190 SKHVL-VEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVN------------------E-----------LEH 239 (305)
Q Consensus 190 ~~~~l-v~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~------------------~-----------~~~ 239 (305)
++.++ +.|+++||+.|....+.+.++..++++. ++.++.+..+.. . .+.
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~-~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL-GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 45444 4689999999999999999999998642 444444443321 0 144
Q ss_pred CCcc------cccEEEEEeCCCceEEee----eCCCCHHHHHHHHHhcC
Q psy7938 240 TKIT------SFPTLKLYAKDDNRVIDY----NGERVLEALSNFVESGG 278 (305)
Q Consensus 240 ~~i~------~~Ptl~~f~~g~~~~~~~----~g~~~~~~l~~fi~~~~ 278 (305)
|++. .+|+++++.++++..... .+.++.+++.+.|+...
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 5653 589999999887743222 34689999999887653
No 262
>PLN02412 probable glutathione peroxidase
Probab=97.49 E-value=0.00011 Score=59.49 Aligned_cols=48 Identities=4% Similarity=-0.036 Sum_probs=31.2
Q ss_pred CCCCeEEEEeeccCceecCCCCCCCChhHHHHHhhhhhcCcccccccccceeeee
Q psy7938 4 DEVPSLRLIRLEEDMAKYKPATPEINVDTVRSFVTEFLAGNLKHSKFKKNLYIHL 58 (305)
Q Consensus 4 ~~~p~i~l~~~~~~~~~~~~~~~~~~~~~~~~~iv~f~a~wc~~c~~~~p~~~~~ 58 (305)
+..|.+.+...+...+.+. ++. .+.+|+.||++||++|+...|.+.++
T Consensus 7 ~~~pdf~l~d~~G~~v~l~--~~~-----gk~vlv~f~a~~C~~c~~e~~~l~~l 54 (167)
T PLN02412 7 KSIYDFTVKDIGGNDVSLN--QYK-----GKVLLIVNVASKCGLTDSNYKELNVL 54 (167)
T ss_pred CCCCceEEECCCCCEEeHH--HhC-----CCEEEEEEeCCCCCChHHHHHHHHHH
Confidence 3467777766655555552 221 25688899999999998655555444
No 263
>PRK15000 peroxidase; Provisional
Probab=97.45 E-value=0.0011 Score=55.25 Aligned_cols=88 Identities=14% Similarity=0.155 Sum_probs=64.3
Q ss_pred CCCcEEEEEECC-CChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc------------------------------c
Q psy7938 189 KSKHVLVEFYAP-WCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE------------------------------L 237 (305)
Q Consensus 189 ~~~~~lv~f~~~-~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~------------------------------~ 237 (305)
.++.++++||+. ||+.|....+.|.+++.+++.. ++.++.+.++... .
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~-g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia 111 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR-GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQ 111 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHH
Confidence 467999999995 9999999999999999999643 4555555444211 1
Q ss_pred ccCCcc------cccEEEEEeCCCceEEeeeC----CCCHHHHHHHHHhc
Q psy7938 238 EHTKIT------SFPTLKLYAKDDNRVIDYNG----ERVLEALSNFVESG 277 (305)
Q Consensus 238 ~~~~i~------~~Ptl~~f~~g~~~~~~~~g----~~~~~~l~~fi~~~ 277 (305)
+.|++. .+|+.+++.+++.....+.| .++.+++.+.|...
T Consensus 112 ~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 112 KAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 345665 68999999988775444444 57889999988753
No 264
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.44 E-value=0.00094 Score=52.57 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=33.2
Q ss_pred CcEEEEEE-CCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCC
Q psy7938 191 KHVLVEFY-APWCGHCKQLAPIYDKLGEKFADRDDITIAKIDAT 233 (305)
Q Consensus 191 ~~~lv~f~-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~ 233 (305)
+.++|.|| ++||+.|....+.++++.+.+++ .++.++.|..+
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~v~vi~vs~d 71 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEA-AGAEVLGISVD 71 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh-CCCEEEEecCC
Confidence 67777777 99999999999999999999964 35666655443
No 265
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.43 E-value=1.2e-05 Score=61.51 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=19.7
Q ss_pred hhHHHHHhhhhhcCcccccccccc
Q psy7938 30 VDTVRSFVTEFLAGNLKHSKFKKN 53 (305)
Q Consensus 30 ~~~~~~~iv~f~a~wc~~c~~~~p 53 (305)
.++.+++++.|+++||++|+.+..
T Consensus 20 k~~~Kpvmv~f~sdwC~~Ck~l~k 43 (130)
T cd02960 20 KKSNKPLMVIHHLEDCPHSQALKK 43 (130)
T ss_pred HHCCCeEEEEEeCCcCHhHHHHHH
Confidence 355778889999999999987753
No 266
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.41 E-value=0.0014 Score=49.07 Aligned_cols=96 Identities=17% Similarity=0.168 Sum_probs=67.9
Q ss_pred EecccChhHHHhcCCCcEEEEEE----CCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCccc----c
Q psy7938 176 VLVASNFDEIAFDKSKHVLVEFY----APWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITS----F 245 (305)
Q Consensus 176 ~l~~~~f~~~v~~~~~~~lv~f~----~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~----~ 245 (305)
.++.++..... ..+.++.|+ +..-..-..+...+.++|+.+++ +++.|+.+|.+.... +.+|++. .
T Consensus 3 ~~~~en~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~-gki~Fv~~D~~~~~~~l~~fgl~~~~~~~ 78 (111)
T cd03073 3 HRTKDNRAQFT---KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPD-RKLNFAVADKEDFSHELEEFGLDFSGGEK 78 (111)
T ss_pred eeccchHHHhc---cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcC-CeEEEEEEcHHHHHHHHHHcCCCcccCCC
Confidence 44556666653 445555554 22334446788999999999962 469999999887643 7888874 9
Q ss_pred cEEEEEeCCCceEEeeeCCC-CHHHHHHHHHh
Q psy7938 246 PTLKLYAKDDNRVIDYNGER-VLEALSNFVES 276 (305)
Q Consensus 246 Ptl~~f~~g~~~~~~~~g~~-~~~~l~~fi~~ 276 (305)
|+++++..+++ -....+.. +.++|.+|+.+
T Consensus 79 P~~~i~~~~~~-KY~~~~~~~t~e~i~~F~~~ 109 (111)
T cd03073 79 PVVAIRTAKGK-KYVMEEEFSDVDALEEFLED 109 (111)
T ss_pred CEEEEEeCCCC-ccCCCcccCCHHHHHHHHHH
Confidence 99999986542 34357777 99999999986
No 267
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.40 E-value=0.0015 Score=53.71 Aligned_cols=88 Identities=8% Similarity=-0.011 Sum_probs=61.9
Q ss_pred CCcEEEEEE-CCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc---------------------------cccCC
Q psy7938 190 SKHVLVEFY-APWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE---------------------------LEHTK 241 (305)
Q Consensus 190 ~~~~lv~f~-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~---------------------------~~~~~ 241 (305)
++.+++.|| +.||+.|....+.|.++..++... ++.++.|..+... .+.|+
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~-g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 568899999 999999999999999999998642 3444444433211 14556
Q ss_pred c----ccc--cEEEEEeCCCceEEee----eCCCCHHHHHHHHHhcC
Q psy7938 242 I----TSF--PTLKLYAKDDNRVIDY----NGERVLEALSNFVESGG 278 (305)
Q Consensus 242 i----~~~--Ptl~~f~~g~~~~~~~----~g~~~~~~l~~fi~~~~ 278 (305)
+ .++ |+.+++++++.....+ ...++.+++.+.|....
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq 156 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ 156 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 5 345 9999999877753332 22568999999886543
No 268
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.27 E-value=0.00089 Score=45.43 Aligned_cols=65 Identities=20% Similarity=0.354 Sum_probs=41.2
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--cc----CCcccccEEEEEeCCCceEEeeeCCCCH
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EH----TKITSFPTLKLYAKDDNRVIDYNGERVL 267 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~----~~i~~~Ptl~~f~~g~~~~~~~~g~~~~ 267 (305)
++.|+++||++|..+...+.+. ++.+..+|.+.+.. .. .++.++|++++ +| . ...| .+.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~-~---~i~g-~~~ 66 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER--------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD-E---HLSG-FRP 66 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC--------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC-E---EEec-CCH
Confidence 5789999999999988877763 24444555554321 22 26789999976 33 1 2333 355
Q ss_pred HHHHHH
Q psy7938 268 EALSNF 273 (305)
Q Consensus 268 ~~l~~f 273 (305)
+.|.++
T Consensus 67 ~~l~~~ 72 (73)
T cd02976 67 DKLRAL 72 (73)
T ss_pred HHHHhh
Confidence 566655
No 269
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.27 E-value=0.00091 Score=57.01 Aligned_cols=82 Identities=13% Similarity=0.191 Sum_probs=55.7
Q ss_pred CCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEe-------------------------------------
Q psy7938 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKID------------------------------------- 231 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id------------------------------------- 231 (305)
+++.+++.|..+.|++|+++.+.+.++.+. .-.+.+..+.
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~---~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL---GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC---CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 467789999999999999999888876431 0011111011
Q ss_pred -CC----ccc--cccCCcccccEEEEEeCCCceEEeeeCCCCHHHHHHHHHhcC
Q psy7938 232 -AT----VNE--LEHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVESGG 278 (305)
Q Consensus 232 -~~----~~~--~~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~~~~l~~fi~~~~ 278 (305)
|. .+. .++++|+++|+++ |.+|. .+.|..+.+.|.++|++..
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~----~~~G~~~~~~L~~~l~~~~ 231 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNGT----LVPGYQGPKEMKAFLDEHQ 231 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCCe----EeeCCCCHHHHHHHHHHcc
Confidence 10 000 1567899999999 56663 2489999999999998653
No 270
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.26 E-value=0.0043 Score=47.86 Aligned_cols=105 Identities=14% Similarity=0.231 Sum_probs=72.7
Q ss_pred cEEecccChhHHHhcCCCcEEEEEECC--CChh-h-hhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcc--cc
Q psy7938 174 VKVLVASNFDEIAFDKSKHVLVEFYAP--WCGH-C-KQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKIT--SF 245 (305)
Q Consensus 174 v~~l~~~~f~~~v~~~~~~~lv~f~~~--~C~~-C-~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~--~~ 245 (305)
|.+|++.++.+-.=..+...+|.|.-. .|.. + ..+...+.++|+.++++ .+.|+-+|.+.... +.|++. ++
T Consensus 4 ~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk-~i~Fv~vd~~~~~~~~~~fgl~~~~~ 82 (130)
T cd02983 4 IIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKK-PWGWLWTEAGAQLDLEEALNIGGFGY 82 (130)
T ss_pred eEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCC-cEEEEEEeCcccHHHHHHcCCCccCC
Confidence 777777665443212244445555432 2322 2 46688999999999752 28899999888764 889985 59
Q ss_pred cEEEEEeCCCceEEeeeCCCCHHHHHHHHHhcCC
Q psy7938 246 PTLKLYAKDDNRVIDYNGERVLEALSNFVESGGK 279 (305)
Q Consensus 246 Ptl~~f~~g~~~~~~~~g~~~~~~l~~fi~~~~~ 279 (305)
|+++++...+.....+.|..+.++|.+|+.+...
T Consensus 83 P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~ 116 (130)
T cd02983 83 PAMVAINFRKMKFATLKGSFSEDGINEFLRELSY 116 (130)
T ss_pred CEEEEEecccCccccccCccCHHHHHHHHHHHHc
Confidence 9999998765322227799999999999998754
No 271
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.21 E-value=0.00026 Score=59.57 Aligned_cols=80 Identities=13% Similarity=0.152 Sum_probs=57.6
Q ss_pred hhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCc-------hhHHHHHHHcCC
Q psy7938 40 FLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDE-------EDHQKILEFFGM 112 (305)
Q Consensus 40 f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------~~~~~l~~~~~I 112 (305)
||.+.|+.|..+.|++..+ ..+++-.|..+.+|... ..+..+++++||
T Consensus 127 F~~~~C~~C~~~~pil~~~-------------------------~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v 181 (215)
T PF13728_consen 127 FYRSDCPYCQQQAPILQQF-------------------------ADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGV 181 (215)
T ss_pred EEcCCCchhHHHHHHHHHH-------------------------HHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCC
Confidence 8999999999999988888 34444456666666320 023678999999
Q ss_pred CCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHH
Q psy7938 113 SKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSF 147 (305)
Q Consensus 113 ~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~f 147 (305)
. .+|++++++.++. ..+....|.++.++|.+-
T Consensus 182 ~--~~Pal~Lv~~~~~-~~~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 182 K--VTPALFLVNPNTK-KWYPVSQGFMSLDELEDR 213 (215)
T ss_pred C--cCCEEEEEECCCC-eEEEEeeecCCHHHHHHh
Confidence 8 9999999998763 233334578888887653
No 272
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.15 E-value=0.00036 Score=57.31 Aligned_cols=47 Identities=6% Similarity=0.017 Sum_probs=26.7
Q ss_pred CCeEEEEeeccCceecCCCCCCCChhHHHHH-hhhhhcCcccccccccceeeeec
Q psy7938 6 VPSLRLIRLEEDMAKYKPATPEINVDTVRSF-VTEFLAGNLKHSKFKKNLYIHLE 59 (305)
Q Consensus 6 ~p~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-iv~f~a~wc~~c~~~~p~~~~~~ 59 (305)
.|.+.+...+...+.+. ++. -+.+ |+-|||+||++|+...|.+.++.
T Consensus 20 ~p~f~l~d~~G~~vsLs--~~~-----Gk~vvlv~n~atwCp~C~~e~p~l~~l~ 67 (183)
T PTZ00256 20 FFEFEAIDIDGQLVQLS--KFK-----GKKAIIVVNVACKCGLTSDHYTQLVELY 67 (183)
T ss_pred ccceEeEcCCCCEEeHH--HhC-----CCcEEEEEEECCCCCchHHHHHHHHHHH
Confidence 55555555555544441 111 1223 34569999999987666555553
No 273
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.15 E-value=0.0047 Score=46.26 Aligned_cols=68 Identities=19% Similarity=0.408 Sum_probs=45.8
Q ss_pred HHhhcCceEEEEEEeC---CchhHHHHHHHcCCCCCCCCeEEEEecCc-CceeccCCCCCCCHHHHHHHHHHH
Q psy7938 83 EFLAGNLKVLFVTINT---DEEDHQKILEFFGMSKDEVPSLRLIRLEE-DMAKYKPATPEISVDTVRSFVTEF 151 (305)
Q Consensus 83 ~~~~~~~~v~~~~vd~---~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~-~~~~~~~~~~~~~~~~l~~fv~~~ 151 (305)
+..+-...+.++.|-. .+.+|.+|+++|+|..+.+|.+.+|..+. +...| +..++.+.++|++|+.+.
T Consensus 47 e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~~LF~~~~~~pv~~-p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 47 EASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPVIYLFVGDKEEPVRY-PFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp HHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEEEEEESSTTSEEEE--TCS-S-HHHHHHHHHHT
T ss_pred HHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCCEEEEecCCCCCCccC-CccCCccHHHHHHHHHhC
Confidence 3333345677888743 34588999999999877899999999443 34455 334789999999999886
No 274
>KOG0911|consensus
Probab=97.11 E-value=0.00038 Score=57.51 Aligned_cols=80 Identities=21% Similarity=0.353 Sum_probs=66.8
Q ss_pred CCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEEEeCCCceEEeeeCCCC
Q psy7938 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLYAKDDNRVIDYNGERV 266 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~ 266 (305)
..+..++.||++||..|+.+...+..+++.. .++.+++.+.+.... ..+.+...|++.++..|.+ ..+..|...
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~---~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~-v~~l~~~~~ 91 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF---KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEK-VDRLSGADP 91 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh---hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchh-hhhhhccCc
Confidence 6788999999999999999999999999998 478889888887664 7888999999999988866 677777655
Q ss_pred HHHHHH
Q psy7938 267 LEALSN 272 (305)
Q Consensus 267 ~~~l~~ 272 (305)
......
T Consensus 92 ~~~~~~ 97 (227)
T KOG0911|consen 92 PFLVSK 97 (227)
T ss_pred HHHHHH
Confidence 544443
No 275
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.10 E-value=0.00014 Score=57.78 Aligned_cols=45 Identities=4% Similarity=-0.038 Sum_probs=28.4
Q ss_pred CCeEEEEeeccCceecCCCCCCCChhHHHHHhhhhhcCcccccccccceeeee
Q psy7938 6 VPSLRLIRLEEDMAKYKPATPEINVDTVRSFVTEFLAGNLKHSKFKKNLYIHL 58 (305)
Q Consensus 6 ~p~i~l~~~~~~~~~~~~~~~~~~~~~~~~~iv~f~a~wc~~c~~~~p~~~~~ 58 (305)
.|.+.+...+...+.+. ++. -+.+++.|||+||+ |+...|.+.++
T Consensus 2 ~~~f~l~d~~G~~v~l~--~~~-----Gk~vvl~fwatwC~-C~~e~p~l~~l 46 (152)
T cd00340 2 IYDFSVKDIDGEPVSLS--KYK-----GKVLLIVNVASKCG-FTPQYEGLEAL 46 (152)
T ss_pred cceeEEECCCCCEEeHH--HhC-----CCEEEEEEEcCCCC-chHHHHHHHHH
Confidence 35555655555555442 221 25688899999999 98666655555
No 276
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.05 E-value=0.00021 Score=50.35 Aligned_cols=56 Identities=18% Similarity=0.195 Sum_probs=37.2
Q ss_pred hhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchh---HHHHHHHcCCC
Q psy7938 37 VTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEED---HQKILEFFGMS 113 (305)
Q Consensus 37 iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---~~~l~~~~~I~ 113 (305)
|+.|+++||++|+...+++..+. + .+.+.+..+|.+... ...+.+..|+.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i-------------------------~~~~~~~~v~~~~~~~~~~~~l~~~~g~~ 53 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--V-------------------------KPAYEVVELDQLSNGSEIQDYLEEITGQR 53 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--C-------------------------CCCCEEEEeeCCCChHHHHHHHHHHhCCC
Confidence 35689999999998887777662 1 123556666654211 12367778887
Q ss_pred CCCCCeEE
Q psy7938 114 KDEVPSLR 121 (305)
Q Consensus 114 ~~~~Ptl~ 121 (305)
++|++.
T Consensus 54 --~vP~v~ 59 (84)
T TIGR02180 54 --TVPNIF 59 (84)
T ss_pred --CCCeEE
Confidence 999973
No 277
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.04 E-value=0.0024 Score=45.48 Aligned_cols=75 Identities=19% Similarity=0.325 Sum_probs=50.3
Q ss_pred EEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc-----c-ccCC--cccccEEEEEeCCCceEEeeeCC
Q psy7938 193 VLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE-----L-EHTK--ITSFPTLKLYAKDDNRVIDYNGE 264 (305)
Q Consensus 193 ~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~-----~-~~~~--i~~~Ptl~~f~~g~~~~~~~~g~ 264 (305)
+++.|..+||++|.++...+.++.... ..+.+..+|.+... . ...+ +.++|++++ +|.. .|.
T Consensus 1 ~V~vys~~~Cp~C~~ak~~L~~~~~~~---~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~-----igG 70 (86)
T TIGR02183 1 FVVIFGRPGCPYCVRAKQLAEKLAIER---ADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKH-----VGG 70 (86)
T ss_pred CEEEEeCCCCccHHHHHHHHHHhCccc---CCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEE-----ecC
Confidence 367899999999999999998886554 24666667766432 2 2233 478999954 4422 232
Q ss_pred CCHHHHHHHHHhcCC
Q psy7938 265 RVLEALSNFVESGGK 279 (305)
Q Consensus 265 ~~~~~l~~fi~~~~~ 279 (305)
.++|.++++++..
T Consensus 71 --~~dl~~~~~~~~~ 83 (86)
T TIGR02183 71 --CTDFEQLVKENFD 83 (86)
T ss_pred --HHHHHHHHHhccc
Confidence 3678888887654
No 278
>KOG3171|consensus
Probab=97.03 E-value=0.0028 Score=51.86 Aligned_cols=104 Identities=17% Similarity=0.262 Sum_probs=82.6
Q ss_pred CcEEe-cccChhHHHhcC--CCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc-ccCCcccccEE
Q psy7938 173 AVKVL-VASNFDEIAFDK--SKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL-EHTKITSFPTL 248 (305)
Q Consensus 173 ~v~~l-~~~~f~~~v~~~--~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~-~~~~i~~~Ptl 248 (305)
.|.++ ++..|.+.+-.. ...++|..|.+.-.-|-.+...+.=||..+ +.+.|+++-.+.-.. ..|....+|++
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAey---P~vKFckikss~~gas~~F~~n~lP~L 215 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEY---PIVKFCKIKSSNTGASDRFSLNVLPTL 215 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccC---CceeEEEeeeccccchhhhcccCCceE
Confidence 48888 568899888433 346889999999999999999999999999 479999998777666 88999999999
Q ss_pred EEEeCCCceEEee-------eCCCCHHHHHHHHHhcCCC
Q psy7938 249 KLYAKDDNRVIDY-------NGERVLEALSNFVESGGKE 280 (305)
Q Consensus 249 ~~f~~g~~~~~~~-------~g~~~~~~l~~fi~~~~~~ 280 (305)
++|++|.-+ ..| -.......|..|++...-.
T Consensus 216 liYkgGeLI-gNFv~va~qlgedffa~dle~FL~e~gll 253 (273)
T KOG3171|consen 216 LIYKGGELI-GNFVSVAEQLGEDFFAGDLESFLNEYGLL 253 (273)
T ss_pred EEeeCCchh-HHHHHHHHHHhhhhhhhhHHHHHHHcCCC
Confidence 999998652 222 1245667889999987643
No 279
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.01 E-value=0.0013 Score=53.92 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=36.7
Q ss_pred CCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCC
Q psy7938 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDAT 233 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~ 233 (305)
.+++++|.|||+||+.|+. .+.++++.+.|++ .++.++.+.|+
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~-~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWAD-QGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhh-CCeEEEEeecc
Confidence 3789999999999999975 7899999999975 46888888775
No 280
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.00 E-value=0.0013 Score=46.05 Aligned_cols=51 Identities=24% Similarity=0.483 Sum_probs=37.1
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc------c-ccCCcccccEEEE
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE------L-EHTKITSFPTLKL 250 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~------~-~~~~i~~~Ptl~~ 250 (305)
++.|+++||++|+.+...+.++.. .+.+..++...+. . +..+..++|++++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~ 59 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI 59 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence 578999999999999999988755 3455666655432 1 3457889999743
No 281
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.97 E-value=0.002 Score=42.31 Aligned_cols=49 Identities=20% Similarity=0.446 Sum_probs=36.6
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc-----cc-CCcccccEEEE
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL-----EH-TKITSFPTLKL 250 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~-----~~-~~i~~~Ptl~~ 250 (305)
++.|..+||++|+.....|++. ++.+..+|.+.... .+ .+..++|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~--------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK--------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc--------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 5789999999999998888443 45566667666532 22 38999999987
No 282
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=96.96 E-value=0.0052 Score=51.31 Aligned_cols=85 Identities=12% Similarity=0.172 Sum_probs=58.6
Q ss_pred cEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc-----------------------------cccCCc
Q psy7938 192 HVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE-----------------------------LEHTKI 242 (305)
Q Consensus 192 ~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~-----------------------------~~~~~i 242 (305)
.+++.|+++||+.|....+.+.+++.+++. .++.++.+.++... .+.|++
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~-~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~ 106 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKK-RNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGM 106 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHH-cCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCC
Confidence 456688999999999999999999999964 34555555444311 134555
Q ss_pred c--------cccEEEEEeCCCceEEeeeC----CCCHHHHHHHHHhc
Q psy7938 243 T--------SFPTLKLYAKDDNRVIDYNG----ERVLEALSNFVESG 277 (305)
Q Consensus 243 ~--------~~Ptl~~f~~g~~~~~~~~g----~~~~~~l~~fi~~~ 277 (305)
. ..|+.++++++++....+.+ .++.+++.+.|...
T Consensus 107 ~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 107 IDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred ccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 3 24578999887775444433 56788898888764
No 283
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.92 E-value=0.0038 Score=51.79 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=23.0
Q ss_pred CCCcEEEEEECCCChhhhhHHHHHHH
Q psy7938 189 KSKHVLVEFYAPWCGHCKQLAPIYDK 214 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~C~~~~~~~~~ 214 (305)
+.+..++.|+.+.|++|+++.+.+.+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh
Confidence 36789999999999999999988875
No 284
>PRK13599 putative peroxiredoxin; Provisional
Probab=96.92 E-value=0.0052 Score=51.76 Aligned_cols=87 Identities=9% Similarity=0.114 Sum_probs=60.8
Q ss_pred CCc-EEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc-----------------------------ccc
Q psy7938 190 SKH-VLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE-----------------------------LEH 239 (305)
Q Consensus 190 ~~~-~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~-----------------------------~~~ 239 (305)
++. +|+.|+++||+.|....+.|.++..+|+.. ++.++.+.++... .+.
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~-gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL-NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 444 578999999999999999999999999642 4555555444311 134
Q ss_pred CCc-------ccccEEEEEeCCCceEEe--ee--CCCCHHHHHHHHHhc
Q psy7938 240 TKI-------TSFPTLKLYAKDDNRVID--YN--GERVLEALSNFVESG 277 (305)
Q Consensus 240 ~~i-------~~~Ptl~~f~~g~~~~~~--~~--g~~~~~~l~~fi~~~ 277 (305)
|++ ...|+++++.++++.... |. ..++.+++.+.|.+.
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 555 257999999987775332 22 256889999988754
No 285
>PRK13189 peroxiredoxin; Provisional
Probab=96.89 E-value=0.0072 Score=51.18 Aligned_cols=87 Identities=10% Similarity=0.075 Sum_probs=58.9
Q ss_pred CC-cEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc-----------------------------ccc
Q psy7938 190 SK-HVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE-----------------------------LEH 239 (305)
Q Consensus 190 ~~-~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~-----------------------------~~~ 239 (305)
++ .+|++|+++||+.|....+.|.+++.+|+. .++.++.+.++... .+.
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~-~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRE-LNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 45 455678899999999999999999999964 23444444333211 134
Q ss_pred CCcc-------cccEEEEEeCCCceEEeee----CCCCHHHHHHHHHhc
Q psy7938 240 TKIT-------SFPTLKLYAKDDNRVIDYN----GERVLEALSNFVESG 277 (305)
Q Consensus 240 ~~i~-------~~Ptl~~f~~g~~~~~~~~----g~~~~~~l~~fi~~~ 277 (305)
|++. .+|+++++++++....... ..++.+++.+.|...
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 4543 4799999998777422222 466888999988754
No 286
>KOG3414|consensus
Probab=96.89 E-value=0.0072 Score=45.24 Aligned_cols=96 Identities=15% Similarity=0.280 Sum_probs=68.4
Q ss_pred cChhHHHh-cCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEEEeCCCc
Q psy7938 180 SNFDEIAF-DKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLYAKDDN 256 (305)
Q Consensus 180 ~~f~~~v~-~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f~~g~~ 256 (305)
...++.+. ...+.+++-|.-.|-+.|..+-..+.+++..+.+-..+.+ +|.++-.. +.|+++..||+++|-++++
T Consensus 12 ~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~Iyl--vdideV~~~~~~~~l~~p~tvmfFfn~kH 89 (142)
T KOG3414|consen 12 WEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYL--VDIDEVPDFVKMYELYDPPTVMFFFNNKH 89 (142)
T ss_pred HHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEE--EecchhhhhhhhhcccCCceEEEEEcCce
Confidence 44455553 4567899999999999999999999999999965444444 45554332 8899999999999987766
Q ss_pred eEEeee-C--------CCCHHHHHHHHHhc
Q psy7938 257 RVIDYN-G--------ERVLEALSNFVESG 277 (305)
Q Consensus 257 ~~~~~~-g--------~~~~~~l~~fi~~~ 277 (305)
..+.+. | ..+.++++..++..
T Consensus 90 mkiD~gtgdn~Kin~~~~~kq~~Idiie~i 119 (142)
T KOG3414|consen 90 MKIDLGTGDNNKINFAFEDKQEFIDIIETI 119 (142)
T ss_pred EEEeeCCCCCceEEEEeccHHHHHHHHHHH
Confidence 433332 1 23467777766654
No 287
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=96.86 E-value=0.001 Score=52.87 Aligned_cols=25 Identities=8% Similarity=-0.021 Sum_probs=18.1
Q ss_pred HHHhhhhhcCcccccccccceeeee
Q psy7938 34 RSFVTEFLAGNLKHSKFKKNLYIHL 58 (305)
Q Consensus 34 ~~~iv~f~a~wc~~c~~~~p~~~~~ 58 (305)
+.+|+.|||+||++|+.-.|.+.++
T Consensus 23 k~vvv~~~as~C~~c~~~~~~l~~l 47 (153)
T TIGR02540 23 KVSLVVNVASECGFTDQNYRALQEL 47 (153)
T ss_pred CEEEEEEeCCCCCchhhhHHHHHHH
Confidence 4567789999999997655544444
No 288
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.85 E-value=0.0024 Score=44.65 Aligned_cols=54 Identities=17% Similarity=0.281 Sum_probs=38.2
Q ss_pred CCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc-----ccCCcccccEEEE
Q psy7938 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL-----EHTKITSFPTLKL 250 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~-----~~~~i~~~Ptl~~ 250 (305)
+++.-++.|+.+||++|++.+..|.+. ++.+..+|.+.+.. ...+...+|.+++
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~--------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i 63 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEK--------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI 63 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHc--------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE
Confidence 345557789999999999999888753 34445566655432 3457789999964
No 289
>PRK13191 putative peroxiredoxin; Provisional
Probab=96.85 E-value=0.0083 Score=50.51 Aligned_cols=87 Identities=9% Similarity=0.088 Sum_probs=59.7
Q ss_pred CCc-EEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc-----------------------------cc
Q psy7938 190 SKH-VLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL-----------------------------EH 239 (305)
Q Consensus 190 ~~~-~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~-----------------------------~~ 239 (305)
++. +|+.|+++||+.|....+.|.+++.+|+.. ++.++.+.++.... +.
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~-g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL-NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 454 445889999999999999999999999642 44555444442211 23
Q ss_pred CCcc-------cccEEEEEeCCCceEEeee----CCCCHHHHHHHHHhc
Q psy7938 240 TKIT-------SFPTLKLYAKDDNRVIDYN----GERVLEALSNFVESG 277 (305)
Q Consensus 240 ~~i~-------~~Ptl~~f~~g~~~~~~~~----g~~~~~~l~~fi~~~ 277 (305)
|++. ..|+.+++.+++.....+. -.++.+++.+.|...
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 4442 4799999998877533322 257899999988764
No 290
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=96.83 E-value=0.0011 Score=57.01 Aligned_cols=87 Identities=15% Similarity=0.146 Sum_probs=62.3
Q ss_pred hhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCch-------hHHHHHHHcCC
Q psy7938 40 FLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEE-------DHQKILEFFGM 112 (305)
Q Consensus 40 f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-------~~~~l~~~~~I 112 (305)
||.+-|++|.++.|++..+ ..+++-.|..+.+|..-- -...+++++||
T Consensus 157 Fy~~~C~~C~~~apil~~f-------------------------a~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v 211 (256)
T TIGR02739 157 FYRGKSPISQKMAPVIQAF-------------------------AKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGV 211 (256)
T ss_pred EECCCCchhHHHHHHHHHH-------------------------HHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCC
Confidence 8999999999999988888 344344455555554410 11458899999
Q ss_pred CCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHHHcC
Q psy7938 113 SKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFLAG 154 (305)
Q Consensus 113 ~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~~~~ 154 (305)
. .+|++++.+..+. ..+....|.++.++|.+-+......
T Consensus 212 ~--~~Pal~Lv~~~t~-~~~pv~~G~iS~deL~~Ri~~v~~~ 250 (256)
T TIGR02739 212 K--YFPALYLVNPKSQ-KMSPLAYGFISQDELKERILNVLTQ 250 (256)
T ss_pred c--cCceEEEEECCCC-cEEEEeeccCCHHHHHHHHHHHHhc
Confidence 8 8999999998754 3333345889999998888777543
No 291
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.82 E-value=0.0066 Score=42.64 Aligned_cols=70 Identities=7% Similarity=0.106 Sum_probs=49.1
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc-----ccCCcccccEEEEEeCCCceEEeeeCCCCHH
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL-----EHTKITSFPTLKLYAKDDNRVIDYNGERVLE 268 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~-----~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~~~ 268 (305)
+..|..+||++|...+..|.+. ++.|-.+|.+.+.. ...+...+|++++ ++ . . .. ..+.+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~--------gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~-~-~--~~-Gf~~~ 67 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR--------GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GD-L-S--WS-GFRPD 67 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CC-E-E--Ee-cCCHH
Confidence 6689999999999998888542 46666677765442 3457789999976 33 2 1 22 55788
Q ss_pred HHHHHHHhcC
Q psy7938 269 ALSNFVESGG 278 (305)
Q Consensus 269 ~l~~fi~~~~ 278 (305)
.|.+.+..+.
T Consensus 68 ~l~~~~~~~~ 77 (81)
T PRK10329 68 MINRLHPAPH 77 (81)
T ss_pred HHHHHHHhhh
Confidence 8888887654
No 292
>KOG3170|consensus
Probab=96.79 E-value=0.017 Score=47.01 Aligned_cols=102 Identities=21% Similarity=0.352 Sum_probs=76.9
Q ss_pred CCcEEecccChhHHHhcC-C-CcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc-ccCCcccccEE
Q psy7938 172 NAVKVLVASNFDEIAFDK-S-KHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL-EHTKITSFPTL 248 (305)
Q Consensus 172 ~~v~~l~~~~f~~~v~~~-~-~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~-~~~~i~~~Ptl 248 (305)
+.|..+++.+|.+.|... . --|+|..|...-+.|+-+...++.+|-.|+ .+.|+++=. ..| ..|.-...||+
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp---~iKFVki~a--t~cIpNYPe~nlPTl 165 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFP---QIKFVKIPA--TTCIPNYPESNLPTL 165 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCC---cceEEeccc--ccccCCCcccCCCeE
Confidence 569999999999988433 3 358888999999999999999999999995 577776543 233 44556778999
Q ss_pred EEEeCCCce-----EEeeeC-CCCHHHHHHHHHhcC
Q psy7938 249 KLYAKDDNR-----VIDYNG-ERVLEALSNFVESGG 278 (305)
Q Consensus 249 ~~f~~g~~~-----~~~~~g-~~~~~~l~~fi~~~~ 278 (305)
++|..|.-+ +..+.| ..+.+++..++-+..
T Consensus 166 ~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qag 201 (240)
T KOG3170|consen 166 LVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQAG 201 (240)
T ss_pred EEeecchHHhheehhhhhcCCcCCHHHHHHHHHhcc
Confidence 999988432 333444 456788888887665
No 293
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=96.78 E-value=0.00066 Score=53.17 Aligned_cols=49 Identities=8% Similarity=0.041 Sum_probs=32.9
Q ss_pred CCCCCeEEEEeeccCceecCCCCCCCChhHHHHHhhhhhcCc-ccccccccceeeee
Q psy7938 3 KDEVPSLRLIRLEEDMAKYKPATPEINVDTVRSFVTEFLAGN-LKHSKFKKNLYIHL 58 (305)
Q Consensus 3 ~~~~p~i~l~~~~~~~~~~~~~~~~~~~~~~~~~iv~f~a~w-c~~c~~~~p~~~~~ 58 (305)
++..|.+.+...+.+.+.+. ++ . -+..|+.||++| |++|+...|.+.++
T Consensus 3 G~~aP~f~l~~~~g~~~~l~--~~----~-gk~vvl~f~~~~~c~~C~~e~~~l~~~ 52 (143)
T cd03014 3 GDKAPDFTLVTSDLSEVSLA--DF----A-GKVKVISVFPSIDTPVCATQTKRFNKE 52 (143)
T ss_pred CCCCCCcEEECCCCcEEeHH--Hh----C-CCeEEEEEEcCCCCCcCHHHHHHHHHH
Confidence 56788888877666555552 22 1 245788899999 69998766555554
No 294
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=96.74 E-value=0.014 Score=50.55 Aligned_cols=87 Identities=11% Similarity=0.082 Sum_probs=60.0
Q ss_pred CCcEEEEEE-CCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcc-----------------c-------------cc
Q psy7938 190 SKHVLVEFY-APWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVN-----------------E-------------LE 238 (305)
Q Consensus 190 ~~~~lv~f~-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~-----------------~-------------~~ 238 (305)
++.+++.|| +.||+.|....+.|.++..+++.. ++.++.|..+.. . .+
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~-gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER-GVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 556777777 899999999999999999999643 344444433321 0 14
Q ss_pred cCCcc-----cccEEEEEeCCCceEEee----eCCCCHHHHHHHHHhc
Q psy7938 239 HTKIT-----SFPTLKLYAKDDNRVIDY----NGERVLEALSNFVESG 277 (305)
Q Consensus 239 ~~~i~-----~~Ptl~~f~~g~~~~~~~----~g~~~~~~l~~fi~~~ 277 (305)
.|++. ..|+.+++++++.....+ ...++.+++.+.|...
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 55664 489999999877753333 2367889999888654
No 295
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=96.73 E-value=0.00021 Score=54.33 Aligned_cols=49 Identities=12% Similarity=0.072 Sum_probs=34.0
Q ss_pred CCCCCeEEEEeeccCceecCCCCCCCChhHHHHHhhhhhcC-cccccccccceeeee
Q psy7938 3 KDEVPSLRLIRLEEDMAKYKPATPEINVDTVRSFVTEFLAG-NLKHSKFKKNLYIHL 58 (305)
Q Consensus 3 ~~~~p~i~l~~~~~~~~~~~~~~~~~~~~~~~~~iv~f~a~-wc~~c~~~~p~~~~~ 58 (305)
|+.+|.+.+...+...+++. +. . .++.|+.||+. ||++|+...+.+.++
T Consensus 2 G~~~P~f~l~~~~g~~~~l~--~l----~-gk~~vl~f~~~~~c~~c~~~l~~l~~~ 51 (124)
T PF00578_consen 2 GDKAPDFTLTDSDGKTVSLS--DL----K-GKPVVLFFWPTAWCPFCQAELPELNEL 51 (124)
T ss_dssp TSBGGCEEEETTTSEEEEGG--GG----T-TSEEEEEEESTTTSHHHHHHHHHHHHH
T ss_pred cCCCCCcEeECCCCCEEEHH--HH----C-CCcEEEEEeCccCccccccchhHHHHH
Confidence 56789999887776666663 22 2 26778889999 999997554433333
No 296
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=96.71 E-value=0.0012 Score=49.85 Aligned_cols=92 Identities=11% Similarity=0.186 Sum_probs=63.6
Q ss_pred hHHHHHhhhhhcC----cccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHH
Q psy7938 31 DTVRSFVTEFLAG----NLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKI 106 (305)
Q Consensus 31 ~~~~~~iv~f~a~----wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l 106 (305)
++.+..++.++++ ||..|+.. +..- .+..++ . ..+.+...|....+..++
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~---l~~~-----------------~v~~~l----n--~~fv~w~~dv~~~eg~~l 68 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNT---LCAP-----------------EVIEYI----N--TRMLFWACSVAKPEGYRV 68 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHH---cCCH-----------------HHHHHH----H--cCEEEEEEecCChHHHHH
Confidence 4456667788999 99999532 1111 111111 1 347788889988888999
Q ss_pred HHHcCCCCCCCCeEEEEecCcC----ceeccCCCCCCCHHHHHHHHHHHHc
Q psy7938 107 LEFFGMSKDEVPSLRLIRLEED----MAKYKPATPEISVDTVRSFVTEFLA 153 (305)
Q Consensus 107 ~~~~~I~~~~~Ptl~~~~~~~~----~~~~~~~~~~~~~~~l~~fv~~~~~ 153 (305)
+..+++. ++|++.++....+ +.+. .|.+++++|...+.....
T Consensus 69 a~~l~~~--~~P~~~~l~~~~~~~~vv~~i---~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 69 SQALRER--TYPFLAMIMLKDNRMTIVGRL---EGLIQPEDLINRLTFIMD 114 (116)
T ss_pred HHHhCCC--CCCEEEEEEecCCceEEEEEE---eCCCCHHHHHHHHHHHHh
Confidence 9999998 9999999964332 1222 488999999998888753
No 297
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.71 E-value=0.016 Score=49.97 Aligned_cols=82 Identities=15% Similarity=0.230 Sum_probs=55.9
Q ss_pred CCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEe-------------------------------------
Q psy7938 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKID------------------------------------- 231 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id------------------------------------- 231 (305)
+.+.+++.|..+.|++|+++.+.+.++.+. +++.+..+-
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~----g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~ 191 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS----GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGL 191 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc----CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCC
Confidence 456789999999999999998887665432 111111000
Q ss_pred --CC--ccc-----------cccCCcccccEEEEEeCCCceEEeeeCCCCHHHHHHHHH
Q psy7938 232 --AT--VNE-----------LEHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVE 275 (305)
Q Consensus 232 --~~--~~~-----------~~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~~~~l~~fi~ 275 (305)
.. ... ..++||+++|++++-++++. +....|....+.|.+.+.
T Consensus 192 ~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~-~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 192 KPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGT-LQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred CccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCC-EEEecCCCCHHHHHHHhC
Confidence 00 000 15678999999999875554 667899999999988774
No 298
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=96.70 E-value=0.0014 Score=56.08 Aligned_cols=87 Identities=14% Similarity=0.070 Sum_probs=63.3
Q ss_pred hhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCc-h------hHHHHHHHcCC
Q psy7938 40 FLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDE-E------DHQKILEFFGM 112 (305)
Q Consensus 40 f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-~------~~~~l~~~~~I 112 (305)
||.+-|++|.+++|++..+ ..+++-.|..+.+|+.- + -....+.++||
T Consensus 150 Fy~s~Cp~C~~~aPil~~f-------------------------a~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v 204 (248)
T PRK13703 150 FYRGQDPIDGQLAQVINDF-------------------------RDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGV 204 (248)
T ss_pred EECCCCchhHHHHHHHHHH-------------------------HHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCC
Confidence 8999999999999998888 44444556667777631 0 11346789999
Q ss_pred CCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHHHcC
Q psy7938 113 SKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFLAG 154 (305)
Q Consensus 113 ~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~~~~ 154 (305)
. .+|++++.+.++. ..+....|.++.++|.+-+.....+
T Consensus 205 ~--~~PAl~Lv~~~t~-~~~pv~~G~iS~deL~~Ri~~v~t~ 243 (248)
T PRK13703 205 K--YFPALMLVDPKSG-SVRPLSYGFITQDDLAKRFLNVSTD 243 (248)
T ss_pred c--ccceEEEEECCCC-cEEEEeeccCCHHHHHHHHHHHHhc
Confidence 7 8999999998754 2333335889999998888877654
No 299
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.65 E-value=0.0037 Score=42.02 Aligned_cols=49 Identities=24% Similarity=0.435 Sum_probs=35.1
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc------ccCCcccccEEEE
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL------EHTKITSFPTLKL 250 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~------~~~~i~~~Ptl~~ 250 (305)
++.|+++||++|+.+...+.+.. +.+..+|...+.. ...+...+|++++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~--------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~ 56 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG--------IEFEEIDILEDGELREELKELSGWPTVPQIFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC--------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 56899999999999998888764 4455667665542 2345678887754
No 300
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=96.57 E-value=0.021 Score=47.43 Aligned_cols=88 Identities=11% Similarity=0.099 Sum_probs=59.9
Q ss_pred CCcEEEEEEC-CCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc------------------------------cc
Q psy7938 190 SKHVLVEFYA-PWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE------------------------------LE 238 (305)
Q Consensus 190 ~~~~lv~f~~-~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~------------------------------~~ 238 (305)
++.++|.||. .||+.|....+.+.++++++.. .++.++.|.++... .+
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~-~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNE-LNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHH-cCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 5688889995 7899999988999999999965 34555555444221 03
Q ss_pred cCCcc------cccEEEEEeCCCceEEeeeC----CCCHHHHHHHHHhcC
Q psy7938 239 HTKIT------SFPTLKLYAKDDNRVIDYNG----ERVLEALSNFVESGG 278 (305)
Q Consensus 239 ~~~i~------~~Ptl~~f~~g~~~~~~~~g----~~~~~~l~~fi~~~~ 278 (305)
.|++. .+|+.+++++++.....+.+ .++.+++.+.|....
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~ 164 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQ 164 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhh
Confidence 44553 37899999988764333322 567778888776543
No 301
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.55 E-value=0.00078 Score=45.70 Aligned_cols=19 Identities=21% Similarity=0.182 Sum_probs=13.9
Q ss_pred hhhhhcCccccccccccee
Q psy7938 37 VTEFLAGNLKHSKFKKNLY 55 (305)
Q Consensus 37 iv~f~a~wc~~c~~~~p~~ 55 (305)
++-|+++||++|+.+...+
T Consensus 2 v~l~~~~~c~~c~~~~~~l 20 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFL 20 (73)
T ss_pred EEEEeCCCChhHHHHHHHH
Confidence 3458899999998665433
No 302
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=96.53 E-value=0.00077 Score=53.62 Aligned_cols=74 Identities=9% Similarity=0.147 Sum_probs=42.0
Q ss_pred CChhHHHHHhhhhhcCcccccccccc-eeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHH
Q psy7938 28 INVDTVRSFVTEFLAGNLKHSKFKKN-LYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKI 106 (305)
Q Consensus 28 ~~~~~~~~~iv~f~a~wc~~c~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l 106 (305)
...++.+++++..+++||+.|+.|.- .|..- . +++... ....-++||.+ +.+++
T Consensus 32 ~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~-----------------e----Va~~lN--~~FI~VkvDre--e~Pdi 86 (163)
T PF03190_consen 32 KAKKENKPIFLSIGYSWCHWCHVMERESFSDP-----------------E----VAEYLN--RNFIPVKVDRE--ERPDI 86 (163)
T ss_dssp HHHHHT--EEEEEE-TT-HHHHHHHHHTTT-H-----------------H----HHHHHH--HH-EEEEEETT--T-HHH
T ss_pred HHHhcCCcEEEEEEecCCcchhhhcccCcCCH-----------------H----HHHHHh--CCEEEEEeccc--cCccH
Confidence 34567889999999999999986641 11111 1 111211 34556788888 88898
Q ss_pred HHHc--------CCCCCCCCeEEEEecCcC
Q psy7938 107 LEFF--------GMSKDEVPSLRLIRLEED 128 (305)
Q Consensus 107 ~~~~--------~I~~~~~Ptl~~~~~~~~ 128 (305)
...| |.. |+|+.++..+...
T Consensus 87 d~~y~~~~~~~~~~g--GwPl~vfltPdg~ 114 (163)
T PF03190_consen 87 DKIYMNAVQAMSGSG--GWPLTVFLTPDGK 114 (163)
T ss_dssp HHHHHHHHHHHHS-----SSEEEEE-TTS-
T ss_pred HHHHHHHHHHhcCCC--CCCceEEECCCCC
Confidence 8887 776 9999999987654
No 303
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=96.51 E-value=0.00082 Score=52.91 Aligned_cols=51 Identities=10% Similarity=0.005 Sum_probs=30.7
Q ss_pred CCCCCeEEEEeeccCceecCCCCCCCChhHHHHHhhhhh-cCcccccccccceeeeec
Q psy7938 3 KDEVPSLRLIRLEEDMAKYKPATPEINVDTVRSFVTEFL-AGNLKHSKFKKNLYIHLE 59 (305)
Q Consensus 3 ~~~~p~i~l~~~~~~~~~~~~~~~~~~~~~~~~~iv~f~-a~wc~~c~~~~p~~~~~~ 59 (305)
+...|.+.+...+...+.+. ++ .+.+..++.|| ++||+.|....|.+.++.
T Consensus 4 G~~~p~~~l~~~~g~~v~l~--~~----~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~ 55 (149)
T cd03018 4 GDKAPDFELPDQNGQEVRLS--EF----RGRKPVVLVFFPLAFTPVCTKELCALRDSL 55 (149)
T ss_pred CCcCCCcEecCCCCCEEeHH--HH----cCCCeEEEEEeCCCCCccHHHHHHHHHHHH
Confidence 45677777776655555441 11 11134566777 999999976655554443
No 304
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=96.41 E-value=0.0013 Score=53.10 Aligned_cols=49 Identities=8% Similarity=0.015 Sum_probs=30.9
Q ss_pred CCCCCeEEEEeeccCceecCCCCCCCChhHHHHHhhhhhcCc-ccccccccceeeee
Q psy7938 3 KDEVPSLRLIRLEEDMAKYKPATPEINVDTVRSFVTEFLAGN-LKHSKFKKNLYIHL 58 (305)
Q Consensus 3 ~~~~p~i~l~~~~~~~~~~~~~~~~~~~~~~~~~iv~f~a~w-c~~c~~~~p~~~~~ 58 (305)
++.+|.+.+...+...+.+. ++. -+..|+.||+.| |++|+...|.+.+.
T Consensus 21 G~~~P~f~l~~~~g~~v~l~--~~~-----Gk~vvl~f~~s~~cp~C~~e~~~l~~~ 70 (167)
T PRK00522 21 GDKAPDFTLVANDLSDVSLA--DFA-----GKRKVLNIFPSIDTGVCATSVRKFNQE 70 (167)
T ss_pred CCCCCCeEEEcCCCcEEehH--HhC-----CCEEEEEEEcCCCCCccHHHHHHHHHH
Confidence 45577777766544444441 221 235788999999 99998765544444
No 305
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.41 E-value=0.0066 Score=41.47 Aligned_cols=64 Identities=13% Similarity=0.154 Sum_probs=42.2
Q ss_pred EEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc-----ccCCcccccEEEEEeCCCceEEeeeCCCCHHH
Q psy7938 195 VEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL-----EHTKITSFPTLKLYAKDDNRVIDYNGERVLEA 269 (305)
Q Consensus 195 v~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~-----~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~~~~ 269 (305)
..|..++|++|+.....|.+. ++.+..+|.+.+.. ...+..++|++++ .|.. .-|..+.+.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~----~~~G~~~~~ 67 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH--------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDL----SWSGFRPDK 67 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCc----EEeccCHHH
Confidence 578899999999999888753 45556667665542 3457889999866 3322 233355565
Q ss_pred HHH
Q psy7938 270 LSN 272 (305)
Q Consensus 270 l~~ 272 (305)
|.+
T Consensus 68 ~~~ 70 (72)
T TIGR02194 68 LKA 70 (72)
T ss_pred HHh
Confidence 554
No 306
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=96.40 E-value=0.0064 Score=49.77 Aligned_cols=62 Identities=10% Similarity=0.102 Sum_probs=38.8
Q ss_pred HHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcC-ceEEEEEEeCC---------chhH
Q psy7938 34 RSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGN-LKVLFVTINTD---------EEDH 103 (305)
Q Consensus 34 ~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~vd~~---------~~~~ 103 (305)
+..|+.|+|+||++|.. .|.+.++ . .+++ ..+.++.+.|+ .++.
T Consensus 26 KvvLVvf~AS~C~~~~q-~~~L~~L---~----------------------~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei 79 (183)
T PRK10606 26 NVLLIVNVASKCGLTPQ-YEQLENI---Q----------------------KAWADQGFVVLGFPCNQFLGQEPGSDEEI 79 (183)
T ss_pred CEEEEEEEeCCCCCcHH-HHHHHHH---H----------------------HHHhhCCeEEEEeeccccccCCCCCHHHH
Confidence 56788999999999953 2233333 2 2222 24888888884 2344
Q ss_pred HHHHH-HcCCCCCCCCeEEEEe
Q psy7938 104 QKILE-FFGMSKDEVPSLRLIR 124 (305)
Q Consensus 104 ~~l~~-~~~I~~~~~Ptl~~~~ 124 (305)
.++|+ .+|+ .+|.+.=++
T Consensus 80 ~~f~~~~~g~---~Fpv~~k~d 98 (183)
T PRK10606 80 KTYCRTTWGV---TFPMFSKIE 98 (183)
T ss_pred HHHHHHccCC---CceeEEEEc
Confidence 56776 6888 588654333
No 307
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.35 E-value=0.0027 Score=43.97 Aligned_cols=47 Identities=19% Similarity=0.391 Sum_probs=30.8
Q ss_pred EEEEEEeCCchhHHHHHHHcCCCCCCCCeEEEEecCcCceeccCCCC-CCCHHHHHHHHH
Q psy7938 91 VLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATP-EISVDTVRSFVT 149 (305)
Q Consensus 91 v~~~~vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~-~~~~~~l~~fv~ 149 (305)
+.+-.+|.. +.+++ .+|||. +.|++++ + |. ..+. | ..+.++|++|++
T Consensus 29 i~~ei~~~~--~~~~~-~~ygv~--~vPalvI-n-g~--~~~~---G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 29 IEVEIIDIE--DFEEI-EKYGVM--SVPALVI-N-GK--VVFV---GRVPSKEELKELLE 76 (76)
T ss_dssp EEEEEEETT--THHHH-HHTT-S--SSSEEEE-T-TE--EEEE---SS--HHHHHHHHHH
T ss_pred CeEEEEEcc--CHHHH-HHcCCC--CCCEEEE-C-CE--EEEE---ecCCCHHHHHHHhC
Confidence 666666766 67777 999998 9999953 3 32 3453 4 567788888874
No 308
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=96.34 E-value=0.0024 Score=52.60 Aligned_cols=141 Identities=10% Similarity=0.013 Sum_probs=69.1
Q ss_pred CCCCCCeEEEEee-ccCceecCCCCCCCChhHHHHHhhhhh-cCcccccccccceeeeecccccccCCCCCcchhhh---
Q psy7938 2 SKDEVPSLRLIRL-EEDMAKYKPATPEINVDTVRSFVTEFL-AGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDT--- 76 (305)
Q Consensus 2 ~~~~~p~i~l~~~-~~~~~~~~~~~~~~~~~~~~~~iv~f~-a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~--- 76 (305)
-++.+|.+.+... +.....+..+++. -+..|+.|| +.||++|+...|.+.+....++...-.---.+.|.
T Consensus 4 ~G~~aP~f~l~~~~~g~~~~~sl~d~~-----Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~ 78 (187)
T TIGR03137 4 INTEIKPFKATAYHNGEFVEVTDEDVK-----GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFV 78 (187)
T ss_pred cCCcCCCcEeeeccCCceeEecHHHHC-----CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHH
Confidence 4677889888763 4443333211111 135677899 99999997655555444333321000000001111
Q ss_pred hhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCCCC----CCCeEEEEecCcCceecc-C-CCCCCCHHHHHHHHHH
Q psy7938 77 VRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMSKD----EVPSLRLIRLEEDMAKYK-P-ATPEISVDTVRSFVTE 150 (305)
Q Consensus 77 ~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~~~----~~Ptl~~~~~~~~~~~~~-~-~~~~~~~~~l~~fv~~ 150 (305)
...+....... ..+.|-.+ +| ....+++.|||... ..|+..+++..+.+.... . ....+..+++.+.+..
T Consensus 79 ~~~~~~~~~~~-~~l~fpll-sD--~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 79 HKAWHDTSEAI-GKITYPML-GD--PTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred HHHHHhhhhhc-cCcceeEE-EC--CccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 11111111111 12332221 23 23678999998521 358888888654432221 1 1234577888887754
Q ss_pred H
Q psy7938 151 F 151 (305)
Q Consensus 151 ~ 151 (305)
.
T Consensus 155 ~ 155 (187)
T TIGR03137 155 A 155 (187)
T ss_pred h
Confidence 3
No 309
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.34 E-value=0.0093 Score=41.85 Aligned_cols=77 Identities=17% Similarity=0.299 Sum_probs=55.8
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEEEeCCCce-EEeeeCCCCHHHH
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLYAKDDNR-VIDYNGERVLEAL 270 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f~~g~~~-~~~~~g~~~~~~l 270 (305)
+++|..+.|+-|..+...+..++... .+.+..+|++.++. .+|+. .+|.+.+=..++.. .....+..+.+.|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~----~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L 76 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF----PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQL 76 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS----TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc----CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHH
Confidence 68899999999999998888865444 58888899987775 78885 79997762211111 3556678899999
Q ss_pred HHHHH
Q psy7938 271 SNFVE 275 (305)
Q Consensus 271 ~~fi~ 275 (305)
.+||.
T Consensus 77 ~~~L~ 81 (81)
T PF05768_consen 77 RAWLE 81 (81)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99984
No 310
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=96.32 E-value=0.00052 Score=59.47 Aligned_cols=87 Identities=14% Similarity=0.199 Sum_probs=59.7
Q ss_pred HHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCC
Q psy7938 34 RSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMS 113 (305)
Q Consensus 34 ~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~ 113 (305)
..+||.||-+.+.-|..+...+..++ .+| ..+.|++|... .-+ +...|.+.
T Consensus 147 ~~VVVHiY~~~~~~C~~mn~~L~~LA-------------------------~ky-p~vKFvkI~a~--~~~-~~~~f~~~ 197 (265)
T PF02114_consen 147 TWVVVHIYEPGFPRCEIMNSCLECLA-------------------------RKY-PEVKFVKIRAS--KCP-ASENFPDK 197 (265)
T ss_dssp -EEEEEEE-TTSCCHHHHHHHHHHHH-------------------------HH--TTSEEEEEEEC--GCC-TTTTS-TT
T ss_pred cEEEEEEEeCCCchHHHHHHHHHHHH-------------------------HhC-CceEEEEEehh--ccC-cccCCccc
Confidence 44678899999999988876666662 222 45899999987 322 56889998
Q ss_pred CCCCCeEEEEecCcCceeccC--C--CCCCCHHHHHHHHHHH
Q psy7938 114 KDEVPSLRLIRLEEDMAKYKP--A--TPEISVDTVRSFVTEF 151 (305)
Q Consensus 114 ~~~~Ptl~~~~~~~~~~~~~~--~--~~~~~~~~l~~fv~~~ 151 (305)
.+|||++|+.|..+..+.. + +..++..+|..|+.++
T Consensus 198 --~LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 198 --NLPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp --C-SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred --CCCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 9999999998876555542 1 2357788899988876
No 311
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=96.25 E-value=0.0026 Score=51.62 Aligned_cols=139 Identities=12% Similarity=0.059 Sum_probs=69.2
Q ss_pred CCCCCeEEEEeecc----CceecCCCCCCCChhHHHHHhhhhh-cCcccccccccceeeeecccccccCCCCCcchhhhh
Q psy7938 3 KDEVPSLRLIRLEE----DMAKYKPATPEINVDTVRSFVTEFL-AGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTV 77 (305)
Q Consensus 3 ~~~~p~i~l~~~~~----~~~~~~~~~~~~~~~~~~~~iv~f~-a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 77 (305)
++.+|.+.+-..+. ..+.+. ++ ++ +..|+.|| +.||++|....+.+.++...++.-.-.-.-.+.|.-
T Consensus 2 G~~aP~f~~~~~~g~~~~~~~~l~--~~----~G-k~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~ 74 (173)
T cd03015 2 GKKAPDFKATAVVPNGEFKEISLS--DY----KG-KWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSH 74 (173)
T ss_pred CCcCCCCEeecccCCCCceEEehH--Hh----CC-CEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCH
Confidence 46678887776543 344441 22 12 45777898 899999976655554443333220000000011111
Q ss_pred ---hhHHHHHhhcC--ceEEEEEEeCCchhHHHHHHHcCCCC----CCCCeEEEEecCcCce-eccCC-CCCCCHHHHHH
Q psy7938 78 ---RSFVTEFLAGN--LKVLFVTINTDEEDHQKILEFFGMSK----DEVPSLRLIRLEEDMA-KYKPA-TPEISVDTVRS 146 (305)
Q Consensus 78 ---~~~~~~~~~~~--~~v~~~~vd~~~~~~~~l~~~~~I~~----~~~Ptl~~~~~~~~~~-~~~~~-~~~~~~~~l~~ 146 (305)
..+.....+.. ..+.|..+ +| ....+++.||+.. ...|+.++++....+. .+... ....+.+++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~f~~l-~D--~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~ 151 (173)
T cd03015 75 FSHLAWRNTPRKEGGLGKINFPLL-AD--PKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLR 151 (173)
T ss_pred HHHHHHHHhhhhhCCccCcceeEE-EC--CchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHH
Confidence 11111111100 12333222 23 3467889999852 1467999998665432 22211 12346677888
Q ss_pred HHHHH
Q psy7938 147 FVTEF 151 (305)
Q Consensus 147 fv~~~ 151 (305)
.+...
T Consensus 152 ~l~~~ 156 (173)
T cd03015 152 VLDAL 156 (173)
T ss_pred HHHHh
Confidence 77664
No 312
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.24 E-value=0.052 Score=39.82 Aligned_cols=98 Identities=11% Similarity=0.156 Sum_probs=63.6
Q ss_pred cEEe-cccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccccccCCcccccEEEEEe
Q psy7938 174 VKVL-VASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKLYA 252 (305)
Q Consensus 174 v~~l-~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~~~~~i~~~Ptl~~f~ 252 (305)
++.+ +..++++++...+..++|-|+..--+ .....|.++|..++. .+.|+... +......+++ ..|++++++
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~--d~~F~~~~-~~~~~~~~~~-~~~~i~l~~ 74 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHP--YIKFFATF-DSKVAKKLGL-KMNEVDFYE 74 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhc--CCEEEEEC-cHHHHHHcCC-CCCcEEEeC
Confidence 4555 33557777741455666666655333 356678999999964 56665422 2222345555 479999998
Q ss_pred CCCceEEee-eCCCCHHHHHHHHHhcC
Q psy7938 253 KDDNRVIDY-NGERVLEALSNFVESGG 278 (305)
Q Consensus 253 ~g~~~~~~~-~g~~~~~~l~~fi~~~~ 278 (305)
+.......| .|..+.+.|.+||..+.
T Consensus 75 ~~~e~~~~y~~g~~~~~~l~~fi~~~~ 101 (102)
T cd03066 75 PFMEEPVTIPDKPYSEEELVDFVEEHK 101 (102)
T ss_pred CCCCCCcccCCCCCCHHHHHHHHHHhc
Confidence 743336678 78889999999998764
No 313
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.19 E-value=0.011 Score=40.44 Aligned_cols=49 Identities=12% Similarity=0.245 Sum_probs=34.8
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc------ccCCcccccEEEE
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL------EHTKITSFPTLKL 250 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~------~~~~i~~~Ptl~~ 250 (305)
++.|+.+||++|++....|++. ++.+..+|...+.. +..+-..+|++++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~--------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK--------GLPYVEINIDIFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 5789999999999998888863 34555567665442 3335578899855
No 314
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.16 E-value=0.012 Score=40.34 Aligned_cols=49 Identities=16% Similarity=0.333 Sum_probs=33.7
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc------ccCCcc-cccEEEE
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL------EHTKIT-SFPTLKL 250 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~------~~~~i~-~~Ptl~~ 250 (305)
++.|..++|++|......|++. ++.+..+|++.+.. +..+.. ++|++++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i 57 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK--------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI 57 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE
Confidence 5679999999999998888763 34555556655432 224555 8998854
No 315
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=96.14 E-value=0.008 Score=41.79 Aligned_cols=49 Identities=14% Similarity=0.423 Sum_probs=33.3
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc------ccCCcccccEEEE
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL------EHTKITSFPTLKL 250 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~------~~~~i~~~Ptl~~ 250 (305)
++.|+.+||++|......|++.. +.+..+|.+.+.. ...+..++|++++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~--------i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i 55 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKG--------VTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI 55 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcC--------CCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE
Confidence 35789999999999998887642 3344445544432 2346788999855
No 316
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.13 E-value=0.012 Score=41.98 Aligned_cols=59 Identities=20% Similarity=0.282 Sum_probs=42.0
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc--------------------------------cccCC
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE--------------------------------LEHTK 241 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~--------------------------------~~~~~ 241 (305)
++.|+.+.|++|..+.+.+.++.....++-.+.+..+...... ....+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4679999999999999999999865544334444444433320 14678
Q ss_pred cccccEEEEEe
Q psy7938 242 ITSFPTLKLYA 252 (305)
Q Consensus 242 i~~~Ptl~~f~ 252 (305)
+.++|++++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999999854
No 317
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.12 E-value=0.014 Score=39.74 Aligned_cols=64 Identities=17% Similarity=0.293 Sum_probs=42.2
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc-----ccCCcccccEEEEEeCCCceEEeeeCCCCHH
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL-----EHTKITSFPTLKLYAKDDNRVIDYNGERVLE 268 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~-----~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~~~ 268 (305)
++.|..+||++|.+.+..|.+. ++.+..+|.+.+.. ...+...+|.+++ +|.. + | ..+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~--------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi--~g~~--i---g--g~~ 65 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN--------GISYEEIPLGKDITGRSLRAVTGAMTVPQVFI--DGEL--I---G--GSD 65 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCCcEEEECCCChhHHHHHHHhCCCCcCeEEE--CCEE--E---e--CHH
Confidence 6789999999999998888753 34455556655442 2347789999843 4422 2 2 256
Q ss_pred HHHHHH
Q psy7938 269 ALSNFV 274 (305)
Q Consensus 269 ~l~~fi 274 (305)
+|.+|+
T Consensus 66 ~l~~~l 71 (72)
T cd03029 66 DLEKYF 71 (72)
T ss_pred HHHHHh
Confidence 677765
No 318
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=96.10 E-value=0.002 Score=50.10 Aligned_cols=106 Identities=16% Similarity=0.185 Sum_probs=53.3
Q ss_pred CCCeEEEEeeccCceecCCCCCCCChhHHHHHhhhhh-cCcccccccccceeeeecccccc----cCCCCCcchhhhhhh
Q psy7938 5 EVPSLRLIRLEEDMAKYKPATPEINVDTVRSFVTEFL-AGNLKHSKFKKNLYIHLEEDMAK----YKPASPEINVDTVRS 79 (305)
Q Consensus 5 ~~p~i~l~~~~~~~~~~~~~~~~~~~~~~~~~iv~f~-a~wc~~c~~~~p~~~~~~~~~~~----~~~~~~~~~~~~~~~ 79 (305)
..|.+.+...+...+.+. ++ . -+.+++.|| +.||+.|....+.+.++...+.. +..-+. .+.+.+..
T Consensus 2 ~~p~f~l~~~~g~~~~l~--~~----~-gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~-d~~~~~~~ 73 (140)
T cd03017 2 KAPDFTLPDQDGETVSLS--DL----R-GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSP-DSVESHAK 73 (140)
T ss_pred CCCCccccCCCCCEEeHH--Hh----C-CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcC-CCHHHHHH
Confidence 456666666555555442 11 1 256788898 58999997654444433322211 000011 01122222
Q ss_pred HHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCCCCCC---------CeEEEEecCcC
Q psy7938 80 FVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMSKDEV---------PSLRLIRLEED 128 (305)
Q Consensus 80 ~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~~~~~---------Ptl~~~~~~~~ 128 (305)
++.+ +.-.+.++ +| ....+++.||+. .. |+..+++..+.
T Consensus 74 ~~~~---~~~~~~~l---~D--~~~~~~~~~gv~--~~~~~~~~~~~p~~~lid~~G~ 121 (140)
T cd03017 74 FAEK---YGLPFPLL---SD--PDGKLAKAYGVW--GEKKKKYMGIERSTFLIDPDGK 121 (140)
T ss_pred HHHH---hCCCceEE---EC--CccHHHHHhCCc--cccccccCCcceeEEEECCCCE
Confidence 2222 11223222 23 235788999997 55 88888886443
No 319
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.09 E-value=0.044 Score=40.40 Aligned_cols=89 Identities=12% Similarity=0.255 Sum_probs=59.2
Q ss_pred cChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccccccCCcccccEEEEEeC------
Q psy7938 180 SNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKLYAK------ 253 (305)
Q Consensus 180 ~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~~~~~i~~~Ptl~~f~~------ 253 (305)
++.++++ ..++.++|-|+..--+ .....|.++|+.++. ++.|+.... ......+++ .|++++|++
T Consensus 9 ~~l~~f~-~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~--d~~F~~~~~-~~~~~~~~~--~~~ivl~~p~~~~~k 79 (104)
T cd03069 9 AEFEKFL-SDDDASVVGFFEDEDS---KLLSEFLKAADTLRE--SFRFAHTSD-KQLLEKYGY--GEGVVLFRPPRLSNK 79 (104)
T ss_pred HHHHHHh-ccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhh--cCEEEEECh-HHHHHhcCC--CCceEEEechhhhcc
Confidence 4566656 3566666666665333 456788899999954 567764332 222366777 688999943
Q ss_pred CCceEEeeeCCCCHHHHHHHHHhc
Q psy7938 254 DDNRVIDYNGERVLEALSNFVESG 277 (305)
Q Consensus 254 g~~~~~~~~g~~~~~~l~~fi~~~ 277 (305)
-......|.|..+.+.|.+||..+
T Consensus 80 ~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 80 FEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred cCcccccccCcCCHHHHHHHHHhh
Confidence 222256799988999999999875
No 320
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.06 E-value=0.046 Score=52.92 Aligned_cols=94 Identities=16% Similarity=0.177 Sum_probs=70.3
Q ss_pred hhHHHhcCCCc-EEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEEEeCCCc-e
Q psy7938 182 FDEIAFDKSKH-VLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLYAKDDN-R 257 (305)
Q Consensus 182 f~~~v~~~~~~-~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f~~g~~-~ 257 (305)
+.+.+.+-.++ .++.|+.+.|..|..+...+++++..- +++.+...|...+.. ++|+++..|++.+++.++. .
T Consensus 357 l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s---~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~ 433 (555)
T TIGR03143 357 LVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLS---EKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYT 433 (555)
T ss_pred HHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcC---CcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCccc
Confidence 34444344555 577888889999999999999998443 467777777655543 8899999999999964443 3
Q ss_pred EEeeeCCCCHHHHHHHHHhcC
Q psy7938 258 VIDYNGERVLEALSNFVESGG 278 (305)
Q Consensus 258 ~~~~~g~~~~~~l~~fi~~~~ 278 (305)
-++|.|-..-.++..||..-.
T Consensus 434 ~i~f~g~P~G~Ef~s~i~~i~ 454 (555)
T TIGR03143 434 GLKFHGVPSGHELNSFILALY 454 (555)
T ss_pred ceEEEecCccHhHHHHHHHHH
Confidence 599999888888888887653
No 321
>PHA03050 glutaredoxin; Provisional
Probab=96.04 E-value=0.01 Score=44.13 Aligned_cols=55 Identities=20% Similarity=0.248 Sum_probs=35.8
Q ss_pred EEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc------c-ccCCcccccEEEE
Q psy7938 193 VLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE------L-EHTKITSFPTLKL 250 (305)
Q Consensus 193 ~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~------~-~~~~i~~~Ptl~~ 250 (305)
-++.|..+||++|++....|.+..-.. ..+....+|..... . +.-+.+.+|++++
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~~---~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI 75 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFKR---GAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF 75 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCc---CCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence 367799999999999998887774322 13444444431111 1 3346788999955
No 322
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=96.01 E-value=0.018 Score=42.53 Aligned_cols=89 Identities=16% Similarity=0.185 Sum_probs=57.5
Q ss_pred CcEEecccChhHHHhcCCCcEEEEEECCCChhh---hhHHHHHHHHHHHhCCCCceEEEEEeCCccc-c-ccCCcccccE
Q psy7938 173 AVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHC---KQLAPIYDKLGEKFADRDDITIAKIDATVNE-L-EHTKITSFPT 247 (305)
Q Consensus 173 ~v~~l~~~~f~~~v~~~~~~~lv~f~~~~C~~C---~~~~~~~~~la~~~~~~~~v~~~~id~~~~~-~-~~~~i~~~Pt 247 (305)
....++.++++.++.. ....+ .|.+..|..| ....=++-++.+.+.+ .+..+-++..... . ..|++..+|+
T Consensus 10 g~~~vd~~~ld~~l~~-~~~~v-lf~~gDp~r~~E~~DvaVILPEL~~af~~--~~~~avv~~~~e~~L~~r~gv~~~Pa 85 (107)
T PF07449_consen 10 GWPRVDADTLDAFLAA-PGDAV-LFFAGDPARFPETADVAVILPELVKAFPG--RFRGAVVARAAERALAARFGVRRWPA 85 (107)
T ss_dssp TEEEE-CCCHHHHHHC-CSCEE-EEESS-TTTSTTCCHHHHHHHHHHCTSTT--SEEEEEEEHHHHHHHHHHHT-TSSSE
T ss_pred CCeeechhhHHHHHhC-CCcEE-EEECCCCCcCcccccceeEcHHHHHhhhC--ccceEEECchhHHHHHHHhCCccCCe
Confidence 3778889999999843 44444 4555555444 4444477788888854 4555555522222 2 8999999999
Q ss_pred EEEEeCCCceEEeeeCCCC
Q psy7938 248 LKLYAKDDNRVIDYNGERV 266 (305)
Q Consensus 248 l~~f~~g~~~~~~~~g~~~ 266 (305)
+++|++|.. .....|.++
T Consensus 86 Lvf~R~g~~-lG~i~gi~d 103 (107)
T PF07449_consen 86 LVFFRDGRY-LGAIEGIRD 103 (107)
T ss_dssp EEEEETTEE-EEEEESSST
T ss_pred EEEEECCEE-EEEecCeec
Confidence 999999865 666677654
No 323
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=95.93 E-value=0.0035 Score=49.72 Aligned_cols=49 Identities=8% Similarity=-0.004 Sum_probs=30.1
Q ss_pred CCCCCeEEEEeeccCceecCCCCCCCChhHHHHHhhhhhcC-cccccccccceeeee
Q psy7938 3 KDEVPSLRLIRLEEDMAKYKPATPEINVDTVRSFVTEFLAG-NLKHSKFKKNLYIHL 58 (305)
Q Consensus 3 ~~~~p~i~l~~~~~~~~~~~~~~~~~~~~~~~~~iv~f~a~-wc~~c~~~~p~~~~~ 58 (305)
++..|.+.+...+...+.+. ++ + -+.+|+.||+. ||+.|+...+.+.++
T Consensus 7 g~~~p~f~l~~~~G~~~~l~--~~----~-gk~~ll~f~~~~~~p~C~~~~~~l~~~ 56 (154)
T PRK09437 7 GDIAPKFSLPDQDGEQVSLT--DF----Q-GQRVLVYFYPKAMTPGCTVQACGLRDN 56 (154)
T ss_pred CCcCCCcEeeCCCCCEEeHH--Hh----C-CCCEEEEEECCCCCCchHHHHHHHHHH
Confidence 45678888777766655552 21 1 24678889986 677797554433333
No 324
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.018 Score=44.95 Aligned_cols=46 Identities=4% Similarity=0.083 Sum_probs=31.9
Q ss_pred hHHHHHHHcCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHH
Q psy7938 102 DHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEF 151 (305)
Q Consensus 102 ~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~ 151 (305)
...+|++.|+|+ +.||+++|+..++..-+. .|-+.++++..-+.=.
T Consensus 103 s~~ELa~kf~vr--stPtfvFfdk~Gk~Il~l--PGY~ppe~Fl~vlkYV 148 (182)
T COG2143 103 STEELAQKFAVR--STPTFVFFDKTGKTILEL--PGYMPPEQFLAVLKYV 148 (182)
T ss_pred cHHHHHHHhccc--cCceEEEEcCCCCEEEec--CCCCCHHHHHHHHHHH
Confidence 346899999998 999999999764433332 2667777765544433
No 325
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=95.83 E-value=0.02 Score=41.89 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=32.5
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc-------ccCCcccccEEEE
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL-------EHTKITSFPTLKL 250 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~-------~~~~i~~~Ptl~~ 250 (305)
++.|..+||++|.+....|.+..- .+....+|.+.... +..+...+|.+++
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~i------~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi 67 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLGV------NPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV 67 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCC------CCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE
Confidence 667999999999999887776522 23444444332211 2235679999843
No 326
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=95.66 E-value=0.0026 Score=48.97 Aligned_cols=66 Identities=6% Similarity=0.183 Sum_probs=38.6
Q ss_pred hhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCC-CCCC
Q psy7938 39 EFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMS-KDEV 117 (305)
Q Consensus 39 ~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~-~~~~ 117 (305)
-|..+|||-|.+.-|.+.++++.. +.+.+-.+--| ++.++.++|--. ...+
T Consensus 47 vi~e~WCgD~~~~vP~l~kiae~~--------------------------p~i~~~~i~rd--~~~el~~~~lt~g~~~I 98 (129)
T PF14595_consen 47 VITETWCGDCARNVPVLAKIAEAN--------------------------PNIEVRIILRD--ENKELMDQYLTNGGRSI 98 (129)
T ss_dssp EE--TT-HHHHHHHHHHHHHHHH---------------------------TTEEEEEE-HH--HHHHHTTTTTT-SS--S
T ss_pred EEECCCchhHHHHHHHHHHHHHhC--------------------------CCCeEEEEEec--CChhHHHHHHhCCCeec
Confidence 388999999998888888773322 34555555555 667777665321 2489
Q ss_pred CeEEEEecC-cCceec
Q psy7938 118 PSLRLIRLE-EDMAKY 132 (305)
Q Consensus 118 Ptl~~~~~~-~~~~~~ 132 (305)
|++++++.+ +...++
T Consensus 99 P~~I~~d~~~~~lg~w 114 (129)
T PF14595_consen 99 PTFIFLDKDGKELGRW 114 (129)
T ss_dssp SEEEEE-TT--EEEEE
T ss_pred CEEEEEcCCCCEeEEE
Confidence 999999764 445566
No 327
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=95.54 E-value=0.034 Score=40.46 Aligned_cols=53 Identities=19% Similarity=0.346 Sum_probs=34.2
Q ss_pred CCcEEEEEE----CCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc------ccCCcccccEEEE
Q psy7938 190 SKHVLVEFY----APWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL------EHTKITSFPTLKL 250 (305)
Q Consensus 190 ~~~~lv~f~----~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~------~~~~i~~~Ptl~~ 250 (305)
+.+++|+-. .+||++|.+....|.+.. +.+..+|...+.. +..+...+|.+++
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~--------i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACG--------VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcC--------CCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 445555444 289999999998887752 3445566654442 2345678899865
No 328
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=95.54 E-value=0.1 Score=38.39 Aligned_cols=90 Identities=20% Similarity=0.201 Sum_probs=57.7
Q ss_pred ccChhHHHhc-CCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc-----c-ccCCcc-cccEEEE
Q psy7938 179 ASNFDEIAFD-KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE-----L-EHTKIT-SFPTLKL 250 (305)
Q Consensus 179 ~~~f~~~v~~-~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~-----~-~~~~i~-~~Ptl~~ 250 (305)
.+++++++.. ..++++|+=.++.|+-.......|++......+ .+.++.+|.-... . ++++|. .-|.+++
T Consensus 7 ~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~--~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~il 84 (105)
T PF11009_consen 7 EEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD--EIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVIL 84 (105)
T ss_dssp HHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGGHHHHHHHHHHHT----SSEEEE
T ss_pred HHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc--cceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEE
Confidence 3677777743 467888888999999999999999999988853 3666777766544 2 788887 5899999
Q ss_pred EeCCCceEEeeeCCCCHHHH
Q psy7938 251 YAKDDNRVIDYNGERVLEAL 270 (305)
Q Consensus 251 f~~g~~~~~~~~g~~~~~~l 270 (305)
+++|+..-..-.+..+.+.|
T Consensus 85 i~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 85 IKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EETTEEEEEEEGGG-SHHHH
T ss_pred EECCEEEEECccccCCHHhc
Confidence 99995522223346666554
No 329
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=95.46 E-value=0.0046 Score=48.09 Aligned_cols=46 Identities=7% Similarity=-0.038 Sum_probs=28.2
Q ss_pred CCeEEEEeeccCceecCCCCCCCChhHHHHHhhhhhcCcccc-cccccceeeee
Q psy7938 6 VPSLRLIRLEEDMAKYKPATPEINVDTVRSFVTEFLAGNLKH-SKFKKNLYIHL 58 (305)
Q Consensus 6 ~p~i~l~~~~~~~~~~~~~~~~~~~~~~~~~iv~f~a~wc~~-c~~~~p~~~~~ 58 (305)
.|.+.+...+...+.+. ++ .-+..++.||++||++ |....+.+.++
T Consensus 2 ~p~f~l~~~~g~~~~l~--~~-----~gk~~vl~f~~~~C~~~C~~~l~~l~~~ 48 (142)
T cd02968 2 GPDFTLTDQDGRPVTLS--DL-----KGKPVLVYFGYTHCPDVCPTTLANLAQA 48 (142)
T ss_pred CCceEEEcCCCCEEchH--Hh-----CCCEEEEEEEcCCCcccCHHHHHHHHHH
Confidence 46666666655544442 11 1246788899999998 97554444443
No 330
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=95.41 E-value=0.0059 Score=43.20 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=47.4
Q ss_pred hhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCch--hHHHHHHHcCCCC
Q psy7938 37 VTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEE--DHQKILEFFGMSK 114 (305)
Q Consensus 37 iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~--~~~~l~~~~~I~~ 114 (305)
|+-|+.+||++|+....++..+.... ..+.+..+|.+.. +...+.+..|-..
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~--------------------------~~i~~~~idi~~~~~~~~el~~~~~~~~ 56 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEER--------------------------DDFDYRYVDIHAEGISKADLEKTVGKPV 56 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccc--------------------------cCCcEEEEECCCChHHHHHHHHHHCCCC
Confidence 45688999999987776666662211 3467777777632 2345655565311
Q ss_pred CCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHHH
Q psy7938 115 DEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFL 152 (305)
Q Consensus 115 ~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~~ 152 (305)
.++|++.+ .|. .. | ..++|.+++...+
T Consensus 57 ~~vP~ifi--~g~---~i----g--g~~~~~~~~~~~~ 83 (85)
T PRK11200 57 ETVPQIFV--DQK---HI----G--GCTDFEAYVKENL 83 (85)
T ss_pred CcCCEEEE--CCE---EE----c--CHHHHHHHHHHhc
Confidence 28999752 332 22 1 3466777777654
No 331
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=95.41 E-value=0.36 Score=40.83 Aligned_cols=86 Identities=17% Similarity=0.266 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHcCcccccccCCCCCCccccCCcEEecccChhHHH--hcCCCcEEEEEECCCChhhhhHHHHHHHHH
Q psy7938 139 ISVDTVRSFVTEFLAGNLKQHLLSQPLPEDWDKNAVKVLVASNFDEIA--FDKSKHVLVEFYAPWCGHCKQLAPIYDKLG 216 (305)
Q Consensus 139 ~~~~~l~~fv~~~~~~~~~~~~~s~~~p~~~~~~~v~~l~~~~f~~~v--~~~~~~~lv~f~~~~C~~C~~~~~~~~~la 216 (305)
.|.+.++.-......+-.+......+.|. .+|..+++.....+. ...++|+++.|.+-.|++-..-...+++++
T Consensus 53 fT~~~lk~vw~~~~ldl~~~a~~G~~APn----s~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~ 128 (237)
T PF00837_consen 53 FTLESLKAVWKVMWLDLFKEAKLGGPAPN----SPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLV 128 (237)
T ss_pred hhHHHHHHHHHHHHHHcccceeCCCCCCC----CceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHH
Confidence 34444544444443333333334445553 358889887744333 256889999999999999999999999999
Q ss_pred HHhCCCCceEEE
Q psy7938 217 EKFADRDDITIA 228 (305)
Q Consensus 217 ~~~~~~~~v~~~ 228 (305)
++|.+..++.++
T Consensus 129 ~~f~d~adFl~V 140 (237)
T PF00837_consen 129 EDFSDVADFLIV 140 (237)
T ss_pred HHhhhhhheehh
Confidence 999764444444
No 332
>PRK13599 putative peroxiredoxin; Provisional
Probab=95.40 E-value=0.011 Score=49.79 Aligned_cols=140 Identities=14% Similarity=0.144 Sum_probs=69.6
Q ss_pred CCCCCeEEEEeeccCceecCCCCCCCChhHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhh---hh
Q psy7938 3 KDEVPSLRLIRLEEDMAKYKPATPEINVDTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTV---RS 79 (305)
Q Consensus 3 ~~~~p~i~l~~~~~~~~~~~~~~~~~~~~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~ 79 (305)
++..|.+.+...+.....+. ++ .+...+|..|+++||+.|+.-.+.+.++...++..--.---.+.|.. ..
T Consensus 5 Gd~aPdF~l~t~~G~~~~~~--~~----~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~ 78 (215)
T PRK13599 5 GEKFPSMEVVTTQGVKRLPE--DY----AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIK 78 (215)
T ss_pred CCCCCCCEeECCCCcEecHH--HH----CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH
Confidence 56677777766544322210 11 11122346799999999976554444443333211000000112221 11
Q ss_pred HHHHHhhc-CceEEEEEEeCCchhHHHHHHHcCCCC-----CCCCeEEEEecCcCceec--cCCCCCCCHHHHHHHHHHH
Q psy7938 80 FVTEFLAG-NLKVLFVTINTDEEDHQKILEFFGMSK-----DEVPSLRLIRLEEDMAKY--KPATPEISVDTVRSFVTEF 151 (305)
Q Consensus 80 ~~~~~~~~-~~~v~~~~vd~~~~~~~~l~~~~~I~~-----~~~Ptl~~~~~~~~~~~~--~~~~~~~~~~~l~~fv~~~ 151 (305)
+....++. ...+.|--+ +| ....++..||+.. ...|+..+++..+.+... .+....++.+++.+.+...
T Consensus 79 w~~~i~~~~~~~i~fPil-~D--~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 79 WVEWIKDNTNIAIPFPVI-AD--DLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred HHHhHHHhcCCCCceeEE-EC--CCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 22211111 123433322 23 3367899999831 147999999876553221 1233457888888888764
No 333
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=95.34 E-value=0.0095 Score=49.00 Aligned_cols=140 Identities=9% Similarity=-0.001 Sum_probs=70.8
Q ss_pred CCCCCeEEEEee-ccCceecCCCCCCCChhHHHHHhhhhh-cCcccccccccceeeeeccccccc----CCCCCcchhhh
Q psy7938 3 KDEVPSLRLIRL-EEDMAKYKPATPEINVDTVRSFVTEFL-AGNLKHSKFKKNLYIHLEEDMAKY----KPASPEINVDT 76 (305)
Q Consensus 3 ~~~~p~i~l~~~-~~~~~~~~~~~~~~~~~~~~~~iv~f~-a~wc~~c~~~~p~~~~~~~~~~~~----~~~~~~~~~~~ 76 (305)
+.+.|.+.+.-. +.+..+++.+++. -+..|+-|| +.||+.|....+.+.+....++.. ...+. .+...
T Consensus 5 ~~~~p~f~~~~~~~g~~~~v~L~d~~-----Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~-D~~~~ 78 (187)
T PRK10382 5 NTKIKPFKNQAFKNGEFIEVTEKDTE-----GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVST-DTHFT 78 (187)
T ss_pred CCcCCCcEEEEEeCCcceEEEHHHhC-----CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeC-CCHHH
Confidence 345676666553 4444444322211 124566788 999999976544444433333210 00010 01111
Q ss_pred hhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCCC--CCC--CeEEEEecCcCceec-cC-CCCCCCHHHHHHHHHH
Q psy7938 77 VRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMSK--DEV--PSLRLIRLEEDMAKY-KP-ATPEISVDTVRSFVTE 150 (305)
Q Consensus 77 ~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~~--~~~--Ptl~~~~~~~~~~~~-~~-~~~~~~~~~l~~fv~~ 150 (305)
...+....... .++.|--+ +| ....+++.||+.. .+. |+..+++..+.+... .. ....++.+++.+.+..
T Consensus 79 ~~a~~~~~~~~-~~l~fpll-sD--~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~a 154 (187)
T PRK10382 79 HKAWHSSSETI-AKIKYAMI-GD--PTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA 154 (187)
T ss_pred HHHHHHhhccc-cCCceeEE-Ec--CchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHh
Confidence 22222222111 12333222 23 3478999999831 255 999999866553222 11 1345688899988876
Q ss_pred HH
Q psy7938 151 FL 152 (305)
Q Consensus 151 ~~ 152 (305)
..
T Consensus 155 lq 156 (187)
T PRK10382 155 AQ 156 (187)
T ss_pred hh
Confidence 53
No 334
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=95.29 E-value=0.0041 Score=40.76 Aligned_cols=52 Identities=17% Similarity=0.280 Sum_probs=33.4
Q ss_pred hhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCc--hhHHHHHHHcCCCCC
Q psy7938 38 TEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDE--EDHQKILEFFGMSKD 115 (305)
Q Consensus 38 v~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~~~l~~~~~I~~~ 115 (305)
+-|..+||++|+....++.+. .+.+-.+|.+. .....+.+..|..
T Consensus 2 ~vy~~~~C~~C~~~~~~L~~~-------------------------------~i~y~~~dv~~~~~~~~~l~~~~g~~-- 48 (60)
T PF00462_consen 2 VVYTKPGCPYCKKAKEFLDEK-------------------------------GIPYEEVDVDEDEEAREELKELSGVR-- 48 (60)
T ss_dssp EEEESTTSHHHHHHHHHHHHT-------------------------------TBEEEEEEGGGSHHHHHHHHHHHSSS--
T ss_pred EEEEcCCCcCHHHHHHHHHHc-------------------------------CCeeeEcccccchhHHHHHHHHcCCC--
Confidence 347789999997655333222 25566666663 3444555656887
Q ss_pred CCCeEEE
Q psy7938 116 EVPSLRL 122 (305)
Q Consensus 116 ~~Ptl~~ 122 (305)
++|++.+
T Consensus 49 ~~P~v~i 55 (60)
T PF00462_consen 49 TVPQVFI 55 (60)
T ss_dssp SSSEEEE
T ss_pred ccCEEEE
Confidence 9999875
No 335
>PRK10638 glutaredoxin 3; Provisional
Probab=95.28 E-value=0.039 Score=38.76 Aligned_cols=49 Identities=10% Similarity=0.285 Sum_probs=34.1
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc-c-----ccCCcccccEEEE
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE-L-----EHTKITSFPTLKL 250 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~-~-----~~~~i~~~Ptl~~ 250 (305)
++.|..+||++|+.....+++. ++.+..+|++.+. . +..+...+|++++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~--------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK--------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 5678899999999998888764 2344455665544 1 3346678998855
No 336
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=95.27 E-value=0.0098 Score=49.35 Aligned_cols=39 Identities=5% Similarity=0.118 Sum_probs=28.4
Q ss_pred hhHHHHHHHcCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHH
Q psy7938 101 EDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFV 148 (305)
Q Consensus 101 ~~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv 148 (305)
.++..+++++||+ +.|+++ +..|. .+ .|..+.++|.+++
T Consensus 159 ~~~~~l~~~~gi~--gtPtii-~~~G~---~~---~G~~~~~~l~~~L 197 (197)
T cd03020 159 AANLALGRQLGVN--GTPTIV-LADGR---VV---PGAPPAAQLEALL 197 (197)
T ss_pred HHHHHHHHHcCCC--cccEEE-ECCCe---Ee---cCCCCHHHHHhhC
Confidence 3788999999998 999997 65553 23 2556677777653
No 337
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=95.21 E-value=0.009 Score=41.68 Aligned_cols=53 Identities=25% Similarity=0.298 Sum_probs=33.8
Q ss_pred hhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchh---HHHHHHHcCCC
Q psy7938 37 VTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEED---HQKILEFFGMS 113 (305)
Q Consensus 37 iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---~~~l~~~~~I~ 113 (305)
|+-|+++||++|+....++.++.. ...+..+|.+... ...+.+..|+.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-----------------------------~~~~~~v~~~~~~~~~~~~~~~~~g~~ 52 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-----------------------------KPAVVELDQHEDGSEIQDYLQELTGQR 52 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-----------------------------CcEEEEEeCCCChHHHHHHHHHHhCCC
Confidence 356889999999877766666522 2445556655211 22455667876
Q ss_pred CCCCCeE
Q psy7938 114 KDEVPSL 120 (305)
Q Consensus 114 ~~~~Ptl 120 (305)
++|++
T Consensus 53 --~~P~v 57 (82)
T cd03419 53 --TVPNV 57 (82)
T ss_pred --CCCeE
Confidence 89986
No 338
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=95.20 E-value=0.046 Score=39.12 Aligned_cols=53 Identities=25% Similarity=0.520 Sum_probs=33.8
Q ss_pred CCcEEEEEEC----CCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc------ccCCcccccEEEE
Q psy7938 190 SKHVLVEFYA----PWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL------EHTKITSFPTLKL 250 (305)
Q Consensus 190 ~~~~lv~f~~----~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~------~~~~i~~~Ptl~~ 250 (305)
+.+++|+-.+ +||++|+.....|.+.. +.+..+|...+.. +..+-..+|.+++
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~--------i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi 69 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLG--------VDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV 69 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC--------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 4566665443 79999999988887763 3444455544332 3346678999844
No 339
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=95.18 E-value=0.054 Score=42.40 Aligned_cols=32 Identities=38% Similarity=0.643 Sum_probs=27.7
Q ss_pred CCCcEEEEEECCCChhhhhHHHHHHHHHHHhC
Q psy7938 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFA 220 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~ 220 (305)
..+.+++.|+.++|++|+.+.+.+.++...+.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP 35 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence 35678999999999999999999999877663
No 340
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.048 Score=38.14 Aligned_cols=49 Identities=18% Similarity=0.386 Sum_probs=34.4
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc--c-----ccC-CcccccEEEE
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE--L-----EHT-KITSFPTLKL 250 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~--~-----~~~-~i~~~Ptl~~ 250 (305)
++.|..++|++|++....|.+. ++.+..+|.+... . +.. +.+++|.+++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~--------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK--------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc--------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 5678999999999988877733 4445555544444 1 333 7899999987
No 341
>KOG1672|consensus
Probab=95.13 E-value=0.0076 Score=48.73 Aligned_cols=87 Identities=10% Similarity=0.200 Sum_probs=63.5
Q ss_pred HHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCC
Q psy7938 34 RSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMS 113 (305)
Q Consensus 34 ~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~ 113 (305)
..+|..||-|....|+.+.-.++.+ +.. +-...|++||+. ..+=|+.+++|+
T Consensus 85 ~kVVcHFY~~~f~RCKimDkhLe~L-------------------------Ak~-h~eTrFikvnae--~~PFlv~kL~Ik 136 (211)
T KOG1672|consen 85 EKVVCHFYRPEFFRCKIMDKHLEIL-------------------------AKR-HVETRFIKVNAE--KAPFLVTKLNIK 136 (211)
T ss_pred ceEEEEEEcCCCcceehHHHHHHHH-------------------------HHh-cccceEEEEecc--cCceeeeeeeee
Confidence 4566789999999998776555555 111 234789999998 778899999999
Q ss_pred CCCCCeEEEEecCcCceeccC--CC---CCCCHHHHHHHHHH
Q psy7938 114 KDEVPSLRLIRLEEDMAKYKP--AT---PEISVDTVRSFVTE 150 (305)
Q Consensus 114 ~~~~Ptl~~~~~~~~~~~~~~--~~---~~~~~~~l~~fv~~ 150 (305)
-+|++++|.+|..+.++.+ +- .+.+.+.|..-+..
T Consensus 137 --VLP~v~l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~~ 176 (211)
T KOG1672|consen 137 --VLPTVALFKNGKTVDYVVGFTDLGNKDDFTTETLENRLAK 176 (211)
T ss_pred --EeeeEEEEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHhh
Confidence 9999999999977666643 11 34566666665554
No 342
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=95.11 E-value=0.0087 Score=42.51 Aligned_cols=80 Identities=20% Similarity=0.190 Sum_probs=45.3
Q ss_pred HhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCch--hHHHHHHHcCCC
Q psy7938 36 FVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEE--DHQKILEFFGMS 113 (305)
Q Consensus 36 ~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~--~~~~l~~~~~I~ 113 (305)
||+-|..+||++|.....++..+.... ..+.+..+|.+.. +...+.+..|-.
T Consensus 1 ~V~vys~~~Cp~C~~ak~~L~~~~~~~--------------------------~~i~~~~idi~~~~~~~~~l~~~~g~~ 54 (86)
T TIGR02183 1 FVVIFGRPGCPYCVRAKQLAEKLAIER--------------------------ADFEFRYIDIHAEGISKADLEKTVGKP 54 (86)
T ss_pred CEEEEeCCCCccHHHHHHHHHHhCccc--------------------------CCCcEEEEECCCCHHHHHHHHHHhCCC
Confidence 456688999999986654444431110 2355666676521 134566666631
Q ss_pred CCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHHH
Q psy7938 114 KDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFL 152 (305)
Q Consensus 114 ~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~~ 152 (305)
..++|++. ++ + ++. | ..++|.+++.+..
T Consensus 55 ~~tVP~if-i~-g----~~i---g--G~~dl~~~~~~~~ 82 (86)
T TIGR02183 55 VETVPQIF-VD-E----KHV---G--GCTDFEQLVKENF 82 (86)
T ss_pred CCCcCeEE-EC-C----EEe---c--CHHHHHHHHHhcc
Confidence 12899884 33 3 221 1 2467888877653
No 343
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=95.09 E-value=0.32 Score=37.08 Aligned_cols=94 Identities=17% Similarity=0.308 Sum_probs=63.4
Q ss_pred cChhHHH-hcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccE-EEEEeCCC
Q psy7938 180 SNFDEIA-FDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPT-LKLYAKDD 255 (305)
Q Consensus 180 ~~f~~~v-~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Pt-l~~f~~g~ 255 (305)
-..++.+ ...++.+++-|..+|-+.|..+-..+.++|...++ -.+++.+|.++-+. +.|.++ -|. +++|-+++
T Consensus 9 ~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~--~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnk 85 (133)
T PF02966_consen 9 WHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN--FAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNK 85 (133)
T ss_dssp HHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTE
T ss_pred chHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc--ceEEEEEEcccchhhhcccccC-CCeEEEEEecCe
Confidence 4455655 35678999999999999999999999999999964 46777788876554 677888 676 55554665
Q ss_pred ceEEeee-C--------CCCHHHHHHHHHh
Q psy7938 256 NRVIDYN-G--------ERVLEALSNFVES 276 (305)
Q Consensus 256 ~~~~~~~-g--------~~~~~~l~~fi~~ 276 (305)
+..+.+. | ..+.++++.-++.
T Consensus 86 hm~vD~GtgnnnKin~~~~~kqe~iDiie~ 115 (133)
T PF02966_consen 86 HMMVDFGTGNNNKINWAFEDKQEFIDIIET 115 (133)
T ss_dssp EEEEESSSSSSSSBCS--SCHHHHHHHHHH
T ss_pred EEEEEecCCCccEEEEEcCcHHHHHHHHHH
Confidence 5344332 1 1245666666553
No 344
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=95.04 E-value=0.097 Score=37.80 Aligned_cols=69 Identities=10% Similarity=0.174 Sum_probs=47.5
Q ss_pred hHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCCCCCCC---eEEEEecCcCceeccCCCCCCCHHHHHHHHHH
Q psy7938 79 SFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMSKDEVP---SLRLIRLEEDMAKYKPATPEISVDTVRSFVTE 150 (305)
Q Consensus 79 ~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~~~~~P---tl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~ 150 (305)
-+...++..+|.-+++.|||.+.|...||.++.|.+..-| ++.-|+.|.=-..| +-..+..+|..|+.+
T Consensus 39 ~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHYKdG~fHkdY---dR~~t~kSmv~FlrD 110 (112)
T cd03067 39 LLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHYKDGDFHTEY---NRQLTFKSMVAFLRD 110 (112)
T ss_pred HHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhcccCCCccccc---cchhhHHHHHHHhhC
Confidence 3334445567889999999998788999999999743334 35556655321233 245688889988864
No 345
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=94.90 E-value=0.01 Score=39.85 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=32.4
Q ss_pred hhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchh--HHHHHHHcCCCCC
Q psy7938 38 TEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEED--HQKILEFFGMSKD 115 (305)
Q Consensus 38 v~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~--~~~l~~~~~I~~~ 115 (305)
+-|.++||++|+....++.+. + +.+..+|.+... ...+.+..|..
T Consensus 3 ~ly~~~~Cp~C~~~~~~L~~~------------------------------~-i~~~~~di~~~~~~~~~l~~~~~~~-- 49 (72)
T cd02066 3 VVFSKSTCPYCKRAKRLLESL------------------------------G-IEFEEIDILEDGELREELKELSGWP-- 49 (72)
T ss_pred EEEECCCCHHHHHHHHHHHHc------------------------------C-CcEEEEECCCCHHHHHHHHHHhCCC--
Confidence 457899999998776554444 2 556677766322 23455556665
Q ss_pred CCCeEE
Q psy7938 116 EVPSLR 121 (305)
Q Consensus 116 ~~Ptl~ 121 (305)
.+|++.
T Consensus 50 ~~P~~~ 55 (72)
T cd02066 50 TVPQIF 55 (72)
T ss_pred CcCEEE
Confidence 888774
No 346
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=94.80 E-value=0.0052 Score=48.13 Aligned_cols=57 Identities=12% Similarity=0.057 Sum_probs=33.1
Q ss_pred HHhhhh-hcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhH-HHHHHHcCC
Q psy7938 35 SFVTEF-LAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDH-QKILEFFGM 112 (305)
Q Consensus 35 ~~iv~f-~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~-~~l~~~~~I 112 (305)
..++-| ++.||++|+...|.+.++...+ . +..+.++.|..+..+. ..+++.+++
T Consensus 25 ~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~----------------------~--~~~v~vv~V~~~~~~~~~~~~~~~~~ 80 (149)
T cd02970 25 PVVVVFYRGFGCPFCREYLRALSKLLPEL----------------------D--ALGVELVAVGPESPEKLEAFDKGKFL 80 (149)
T ss_pred CEEEEEECCCCChhHHHHHHHHHHHHHHH----------------------H--hcCeEEEEEeCCCHHHHHHHHHhcCC
Confidence 344555 5999999986655544442221 1 1347788888774322 235566666
Q ss_pred CCCCCC
Q psy7938 113 SKDEVP 118 (305)
Q Consensus 113 ~~~~~P 118 (305)
.+|
T Consensus 81 ---~~p 83 (149)
T cd02970 81 ---PFP 83 (149)
T ss_pred ---CCe
Confidence 466
No 347
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=94.78 E-value=0.15 Score=36.86 Aligned_cols=92 Identities=22% Similarity=0.348 Sum_probs=66.1
Q ss_pred cChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc----ccCCcc----cccE-EEE
Q psy7938 180 SNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL----EHTKIT----SFPT-LKL 250 (305)
Q Consensus 180 ~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~----~~~~i~----~~Pt-l~~ 250 (305)
.+|.+++ ...+.|+|.|..+--.. ......+.++|...++.+ .++-|||...+. +++.+. --|. +.-
T Consensus 10 KdfKKLL-RTr~NVLvLy~ks~k~a-~~~Lk~~~~~A~~vkG~g--T~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkH 85 (112)
T cd03067 10 KDFKKLL-RTRNNVLVLYSKSAKSA-EALLKLLSDVAQAVKGQG--TIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKH 85 (112)
T ss_pred HHHHHHH-hhcCcEEEEEecchhhH-HHHHHHHHHHHHHhcCce--eEEEEecCChHHHHHHHHHccCCCCCCCcchhhc
Confidence 6788776 55678888887764333 334558899999997655 555679987553 667776 3443 556
Q ss_pred EeCCCceEEeeeCCCCHHHHHHHHHh
Q psy7938 251 YAKDDNRVIDYNGERVLEALSNFVES 276 (305)
Q Consensus 251 f~~g~~~~~~~~g~~~~~~l~~fi~~ 276 (305)
|+.|.- ...|+...+..+|..|++.
T Consensus 86 YKdG~f-HkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 86 YKDGDF-HTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred ccCCCc-cccccchhhHHHHHHHhhC
Confidence 777755 6789999999999999975
No 348
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=94.70 E-value=0.35 Score=35.78 Aligned_cols=97 Identities=13% Similarity=0.180 Sum_probs=59.9
Q ss_pred cEEec-ccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccccccCCcccccEEEEEe
Q psy7938 174 VKVLV-ASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKLYA 252 (305)
Q Consensus 174 v~~l~-~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~~~~~i~~~Ptl~~f~ 252 (305)
++.++ .++++.++.+.+..++|-|+..--+ .....|.++|..++. .+.|+.... ......+++. .|.+++|.
T Consensus 2 v~~i~s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd--d~~F~~t~~-~~~~~~~~~~-~~~vvl~r 74 (107)
T cd03068 2 SKQLQTLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLRE--DYKFHHTFD-SEIFKSLKVS-PGQLVVFQ 74 (107)
T ss_pred ceEcCCHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhccc--CCEEEEECh-HHHHHhcCCC-CCceEEEC
Confidence 44553 3556666644435666666665332 356778899999964 567754332 2222556664 57788883
Q ss_pred ------CCCceEEeeeCC-CCHHH-HHHHHHhc
Q psy7938 253 ------KDDNRVIDYNGE-RVLEA-LSNFVESG 277 (305)
Q Consensus 253 ------~g~~~~~~~~g~-~~~~~-l~~fi~~~ 277 (305)
+=......|.|. .+.++ |.+||.+|
T Consensus 75 p~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 75 PEKFQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred cHHHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 322237788987 67766 99999875
No 349
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=94.65 E-value=0.015 Score=45.07 Aligned_cols=46 Identities=11% Similarity=0.013 Sum_probs=29.4
Q ss_pred CCeEEEEeeccCceecCCCCCCCChhHHHHHhhhhh-cCcccccccccceeeee
Q psy7938 6 VPSLRLIRLEEDMAKYKPATPEINVDTVRSFVTEFL-AGNLKHSKFKKNLYIHL 58 (305)
Q Consensus 6 ~p~i~l~~~~~~~~~~~~~~~~~~~~~~~~~iv~f~-a~wc~~c~~~~p~~~~~ 58 (305)
.|.+.+...+.+.+.+. ++ ..+..++.|| +.||+.|....|.+.++
T Consensus 2 ~p~f~l~~~~g~~~~l~--~~-----~gk~~ll~f~~~~~c~~C~~~~~~l~~~ 48 (140)
T cd02971 2 APDFTLPATDGGEVSLS--DF-----KGKWVVLFFYPKDFTPVCTTELCAFRDL 48 (140)
T ss_pred CCCceeccCCCcEEehH--Hh-----CCCeEEEEEeCCCCCCcCHHHHHHHHHH
Confidence 46677766655555552 11 2356788888 78999997665555444
No 350
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=94.62 E-value=0.017 Score=49.17 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=33.1
Q ss_pred chhHHHHHHHcCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHH
Q psy7938 100 EEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEF 151 (305)
Q Consensus 100 ~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~ 151 (305)
..++..+++++||+ +.|+++ +.+|. .+ .|..+.+.|.+++...
T Consensus 188 v~~~~~la~~lgi~--gTPtiv-~~~G~---~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 188 IADHYALGVQFGVQ--GTPAIV-LSNGT---LV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred HHHhHHHHHHcCCc--cccEEE-EcCCe---Ee---eCCCCHHHHHHHHHHc
Confidence 34889999999998 999999 54442 33 3667889999988764
No 351
>KOG2603|consensus
Probab=94.32 E-value=0.083 Score=46.08 Aligned_cols=61 Identities=15% Similarity=0.346 Sum_probs=46.3
Q ss_pred ceEEEEEEeCCchhHHHHHHHcCCCCCCCCeEEEEecCcCce----eccCCCCCCCHHHHHHHHHHHHc
Q psy7938 89 LKVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMA----KYKPATPEISVDTVRSFVTEFLA 153 (305)
Q Consensus 89 ~~v~~~~vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~----~~~~~~~~~~~~~l~~fv~~~~~ 153 (305)
.++-|..||.+ +-+++-+.++++ ..|++.+|.+..... .+....-....|++.+|+++...
T Consensus 103 tklFF~~Vd~~--e~p~~Fq~l~ln--~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tk 167 (331)
T KOG2603|consen 103 TKLFFCMVDYD--ESPQVFQQLNLN--NVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTK 167 (331)
T ss_pred ceEEEEEEecc--ccHHHHHHhccc--CCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhh
Confidence 48999999999 889999999998 999999997654311 12111223458999999999864
No 352
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=94.15 E-value=0.2 Score=39.66 Aligned_cols=44 Identities=20% Similarity=0.400 Sum_probs=34.4
Q ss_pred CCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeC
Q psy7938 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDA 232 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~ 232 (305)
..+.+|+.|+...|++|+.+.+.+.++.+.+-+.+++.+.-.+.
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 35678999999999999999999999999984445666665544
No 353
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=93.72 E-value=0.012 Score=44.42 Aligned_cols=59 Identities=7% Similarity=0.001 Sum_probs=33.1
Q ss_pred hcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhH-----HHHHH--HcCCC
Q psy7938 41 LAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDH-----QKILE--FFGMS 113 (305)
Q Consensus 41 ~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~-----~~l~~--~~~I~ 113 (305)
--+||+.|+...|.+.+. +.+......|+.|.+..... -.+-. .++|+
T Consensus 34 g~sWCPDC~~aep~v~~~-------------------------f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~ 88 (119)
T PF06110_consen 34 GQSWCPDCVAAEPVVEKA-------------------------FKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLK 88 (119)
T ss_dssp S-BSSHHHHHHHHHHHHH-------------------------HHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---
T ss_pred CCcccHHHHHHHHHHHHH-------------------------HHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeee
Confidence 357999998777666555 23333457788777652211 11222 58888
Q ss_pred CCCCCeEEEEecC
Q psy7938 114 KDEVPSLRLIRLE 126 (305)
Q Consensus 114 ~~~~Ptl~~~~~~ 126 (305)
++|||+-+..+
T Consensus 89 --~IPTLi~~~~~ 99 (119)
T PF06110_consen 89 --GIPTLIRWETG 99 (119)
T ss_dssp --SSSEEEECTSS
T ss_pred --ecceEEEECCC
Confidence 99999988765
No 354
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=93.65 E-value=0.021 Score=39.74 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=33.4
Q ss_pred hhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCch-hHHHHHHHcCCCCC
Q psy7938 37 VTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEE-DHQKILEFFGMSKD 115 (305)
Q Consensus 37 iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-~~~~l~~~~~I~~~ 115 (305)
|+-|..+||++|+..+.++.+. .|.+-.+|.+.. +...+....|..
T Consensus 10 V~ly~~~~Cp~C~~ak~~L~~~-------------------------------gi~y~~idi~~~~~~~~~~~~~g~~-- 56 (79)
T TIGR02190 10 VVVFTKPGCPFCAKAKATLKEK-------------------------------GYDFEEIPLGNDARGRSLRAVTGAT-- 56 (79)
T ss_pred EEEEECCCCHhHHHHHHHHHHc-------------------------------CCCcEEEECCCChHHHHHHHHHCCC--
Confidence 5568899999998665444332 255556666632 223455566776
Q ss_pred CCCeEE
Q psy7938 116 EVPSLR 121 (305)
Q Consensus 116 ~~Ptl~ 121 (305)
.+|.+.
T Consensus 57 ~vP~i~ 62 (79)
T TIGR02190 57 TVPQVF 62 (79)
T ss_pred CcCeEE
Confidence 899885
No 355
>PRK13190 putative peroxiredoxin; Provisional
Probab=93.58 E-value=0.046 Score=45.58 Aligned_cols=112 Identities=13% Similarity=0.111 Sum_probs=58.2
Q ss_pred hhhcCcccccccccceeeeecccccccCCCCCcchhh---hhhhHHHHHhhcCc-eEEEEEEeCCchhHHHHHHHcCCCC
Q psy7938 39 EFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVD---TVRSFVTEFLAGNL-KVLFVTINTDEEDHQKILEFFGMSK 114 (305)
Q Consensus 39 ~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~v~~~~vd~~~~~~~~l~~~~~I~~ 114 (305)
-|+++||+.|..-.+.+.+....++.-.-.-.-.+.| ....++.+..+..+ .+.|-.+ +| ....+++.|||..
T Consensus 34 ~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll-~D--~~~~ia~~ygv~~ 110 (202)
T PRK13190 34 SHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVI-AD--IDKELAREYNLID 110 (202)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEE-EC--CChHHHHHcCCcc
Confidence 5799999999754443333322222100000001112 11223333322122 2444322 23 3378999999941
Q ss_pred ----CCCCeEEEEecCcCceecc--CCCCCCCHHHHHHHHHHHHc
Q psy7938 115 ----DEVPSLRLIRLEEDMAKYK--PATPEISVDTVRSFVTEFLA 153 (305)
Q Consensus 115 ----~~~Ptl~~~~~~~~~~~~~--~~~~~~~~~~l~~fv~~~~~ 153 (305)
..+|+..+++..+.+.... .....++.+++.+.++....
T Consensus 111 ~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 111 ENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred ccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 1479999998766533221 12346899999998887643
No 356
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=93.50 E-value=0.036 Score=38.38 Aligned_cols=21 Identities=14% Similarity=-0.072 Sum_probs=14.7
Q ss_pred hhhhcCcccccccccceeeee
Q psy7938 38 TEFLAGNLKHSKFKKNLYIHL 58 (305)
Q Consensus 38 v~f~a~wc~~c~~~~p~~~~~ 58 (305)
+-|..+||++|.....++.+.
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~ 22 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK 22 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc
Confidence 347789999998666544443
No 357
>PRK10824 glutaredoxin-4; Provisional
Probab=93.41 E-value=0.17 Score=38.03 Aligned_cols=55 Identities=20% Similarity=0.332 Sum_probs=32.6
Q ss_pred CCcEEEEEEC----CCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc----ccCCcccccEEEE
Q psy7938 190 SKHVLVEFYA----PWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL----EHTKITSFPTLKL 250 (305)
Q Consensus 190 ~~~~lv~f~~----~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~----~~~~i~~~Ptl~~ 250 (305)
+.+|+|+--+ |||++|++....|.++... +..+.++-+.... +.-+-..+|.+++
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~------~~~idi~~d~~~~~~l~~~sg~~TVPQIFI 76 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGER------FAYVDILQNPDIRAELPKYANWPTFPQLWV 76 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCC------ceEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence 4455554443 6999999999888876422 2333333222111 2235678898877
No 358
>PRK13191 putative peroxiredoxin; Provisional
Probab=93.15 E-value=0.079 Score=44.62 Aligned_cols=49 Identities=10% Similarity=0.158 Sum_probs=32.8
Q ss_pred HHHHHHHcCCCC-----CCCCeEEEEecCcCceec-c-CCCCCCCHHHHHHHHHHH
Q psy7938 103 HQKILEFFGMSK-----DEVPSLRLIRLEEDMAKY-K-PATPEISVDTVRSFVTEF 151 (305)
Q Consensus 103 ~~~l~~~~~I~~-----~~~Ptl~~~~~~~~~~~~-~-~~~~~~~~~~l~~fv~~~ 151 (305)
...+++.||+.. ...|+..+++..+.+... . .....++.+++.+.++..
T Consensus 105 ~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 105 MGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred chHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 378899999841 236888999876553322 1 123457889999888765
No 359
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=93.07 E-value=0.14 Score=44.28 Aligned_cols=49 Identities=12% Similarity=0.055 Sum_probs=32.5
Q ss_pred HHHHHHcCCCC---CCCCeEEEEecCcCceecc-C-CCCCCCHHHHHHHHHHHH
Q psy7938 104 QKILEFFGMSK---DEVPSLRLIRLEEDMAKYK-P-ATPEISVDTVRSFVTEFL 152 (305)
Q Consensus 104 ~~l~~~~~I~~---~~~Ptl~~~~~~~~~~~~~-~-~~~~~~~~~l~~fv~~~~ 152 (305)
..+++.||+.. -..|+..+++..+.+.... . ....++.+++.+.+....
T Consensus 172 ~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq 225 (261)
T PTZ00137 172 REVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQ 225 (261)
T ss_pred hHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhc
Confidence 78999999941 1479999998655432221 1 234578888888887653
No 360
>KOG2640|consensus
Probab=92.87 E-value=0.038 Score=48.12 Aligned_cols=86 Identities=26% Similarity=0.405 Sum_probs=67.1
Q ss_pred CCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc---cccCCcccccEEEEEeCCCceEEeeeCCC
Q psy7938 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE---LEHTKITSFPTLKLYAKDDNRVIDYNGER 265 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~---~~~~~i~~~Ptl~~f~~g~~~~~~~~g~~ 265 (305)
...++-+.||+.||+..+...|.+.-....+.. +....++-.... ...+++.+.|++.+.... -+.+|-|.+
T Consensus 75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~---i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t--~~~~~~~~r 149 (319)
T KOG2640|consen 75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS---IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQT--CPASYRGER 149 (319)
T ss_pred cCCcccccchhcccCcccccCcccchhhhhccc---cccccHHHHhhcccchhccccccCCcceeeccc--cchhhcccc
Confidence 355788999999999999999999888888752 333333322222 278999999999997765 379999999
Q ss_pred CHHHHHHHHHhcCC
Q psy7938 266 VLEALSNFVESGGK 279 (305)
Q Consensus 266 ~~~~l~~fi~~~~~ 279 (305)
+..+|.+|..+...
T Consensus 150 ~l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 150 DLASLVNFYTEITP 163 (319)
T ss_pred cHHHHHHHHHhhcc
Confidence 99999999998764
No 361
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=92.81 E-value=0.16 Score=42.40 Aligned_cols=140 Identities=14% Similarity=0.205 Sum_probs=66.9
Q ss_pred CCCCCeEEEEeeccCceecCCCCCCCChhHHHHHhhhhhcCcccccccccceeeeeccccccc----CCCCCcchhhhhh
Q psy7938 3 KDEVPSLRLIRLEEDMAKYKPATPEINVDTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKY----KPASPEINVDTVR 78 (305)
Q Consensus 3 ~~~~p~i~l~~~~~~~~~~~~~~~~~~~~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~----~~~~~~~~~~~~~ 78 (305)
++..|.+.+...+.. +.+. ++ .+....+|..|+++||+.|....+.+.++...++.. ...+.. +.....
T Consensus 2 G~~aP~F~~~~~~g~-~~l~--d~---~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D-~~~~~~ 74 (203)
T cd03016 2 GDTAPNFEADTTHGP-IKFH--DY---LGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVD-SVESHI 74 (203)
T ss_pred cCCCCCeEEecCCCc-EeHH--HH---cCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECC-CHHHHH
Confidence 456777777654332 2221 11 010112344689999999976544444443333211 000100 011111
Q ss_pred hHHHHHhhc-CceEEEEEEeCCchhHHHHHHHcCCCCC------CCCeEEEEecCcCceec-c-CCCCCCCHHHHHHHHH
Q psy7938 79 SFVTEFLAG-NLKVLFVTINTDEEDHQKILEFFGMSKD------EVPSLRLIRLEEDMAKY-K-PATPEISVDTVRSFVT 149 (305)
Q Consensus 79 ~~~~~~~~~-~~~v~~~~vd~~~~~~~~l~~~~~I~~~------~~Ptl~~~~~~~~~~~~-~-~~~~~~~~~~l~~fv~ 149 (305)
.+.+....+ +..+.|-.+ +| ....+++.||+... ..|+..+++..+.+... . .....++.+++.+.+.
T Consensus 75 ~~~~~i~~~~~~~~~fpil-~D--~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~ 151 (203)
T cd03016 75 KWIEDIEEYTGVEIPFPII-AD--PDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVD 151 (203)
T ss_pred HHHhhHHHhcCCCCceeEE-EC--chHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHH
Confidence 122222221 123444322 23 34789999998521 23467888866543222 1 1223567888988887
Q ss_pred HHH
Q psy7938 150 EFL 152 (305)
Q Consensus 150 ~~~ 152 (305)
...
T Consensus 152 ~lq 154 (203)
T cd03016 152 ALQ 154 (203)
T ss_pred HHh
Confidence 754
No 362
>KOG2640|consensus
Probab=92.77 E-value=0.11 Score=45.43 Aligned_cols=82 Identities=15% Similarity=0.213 Sum_probs=57.3
Q ss_pred hhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCCCCCCC
Q psy7938 39 EFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMSKDEVP 118 (305)
Q Consensus 39 ~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~~~~~P 118 (305)
.||+.||+..+..+|-+.-....+. .|....++=. -......+.+|+. +.|
T Consensus 82 ~fy~s~C~fsr~~~~~fd~~~sl~~--------------------------~i~h~~vee~-~~lpsv~s~~~~~--~~p 132 (319)
T KOG2640|consen 82 LFYASWCPFSRAVRPEFDVRSSLFS--------------------------SIQHFAVEES-QALPSVFSSYGIH--SEP 132 (319)
T ss_pred cchhcccCcccccCcccchhhhhcc--------------------------ccccccHHHH-hhcccchhccccc--cCC
Confidence 3999999999888877776644442 1222222211 0235577899998 999
Q ss_pred eEEEEecCcCceeccCCCCCCCHHHHHHHHHHHHc
Q psy7938 119 SLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFLA 153 (305)
Q Consensus 119 tl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~~~ 153 (305)
++.+....-. ..|. |.++..+|.+|..+.+.
T Consensus 133 s~~~~n~t~~-~~~~---~~r~l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 133 SNLMLNQTCP-ASYR---GERDLASLVNFYTEITP 163 (319)
T ss_pred cceeeccccc-hhhc---ccccHHHHHHHHHhhcc
Confidence 9998886644 4553 67889999999999864
No 363
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=92.74 E-value=0.19 Score=40.54 Aligned_cols=33 Identities=27% Similarity=0.610 Sum_probs=29.3
Q ss_pred CCCcEEEEEECCCChhhhhHHHHHHHHHHHhCC
Q psy7938 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFAD 221 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~ 221 (305)
..+..++.|+...|++|+.+.+.+..+...+.+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~ 46 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK 46 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC
Confidence 467889999999999999999999999888743
No 364
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=92.70 E-value=0.032 Score=38.01 Aligned_cols=14 Identities=21% Similarity=0.266 Sum_probs=10.8
Q ss_pred hhhcCccccccccc
Q psy7938 39 EFLAGNLKHSKFKK 52 (305)
Q Consensus 39 ~f~a~wc~~c~~~~ 52 (305)
-|..++|++|+...
T Consensus 3 ly~~~~Cp~C~~ak 16 (72)
T TIGR02194 3 VYSKNNCVQCKMTK 16 (72)
T ss_pred EEeCCCCHHHHHHH
Confidence 36679999997655
No 365
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=92.56 E-value=0.2 Score=46.48 Aligned_cols=49 Identities=14% Similarity=0.281 Sum_probs=35.2
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc-----cc---------CCcccccEEEE
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL-----EH---------TKITSFPTLKL 250 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~-----~~---------~~i~~~Ptl~~ 250 (305)
++.|..+||++|.+....|.+. ++.+..+|+++... .+ .+.+++|++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~--------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN--------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 6789999999999988777764 35555666665442 11 36778999976
No 366
>KOG1752|consensus
Probab=92.36 E-value=0.48 Score=34.88 Aligned_cols=51 Identities=14% Similarity=0.289 Sum_probs=36.3
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc-------ccCCcccccEEEE
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL-------EHTKITSFPTLKL 250 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~-------~~~~i~~~Ptl~~ 250 (305)
+|.|..+||+.|..+...|.. + .....+..+|-..+.. +--+-+.+|.+++
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~--~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----L--GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----C--CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence 455999999999998888877 3 3466778788665442 2223558999887
No 367
>PHA03050 glutaredoxin; Provisional
Probab=92.27 E-value=0.056 Score=40.16 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=15.9
Q ss_pred hhhhhcCcccccccccceeeee
Q psy7938 37 VTEFLAGNLKHSKFKKNLYIHL 58 (305)
Q Consensus 37 iv~f~a~wc~~c~~~~p~~~~~ 58 (305)
|+-|..+||++|++...++...
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~ 36 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKF 36 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHc
Confidence 4459999999998766555444
No 368
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=92.11 E-value=0.1 Score=36.97 Aligned_cols=20 Identities=10% Similarity=0.296 Sum_probs=16.7
Q ss_pred HHHHHHHcCCCCCCCCeEEEEe
Q psy7938 103 HQKILEFFGMSKDEVPSLRLIR 124 (305)
Q Consensus 103 ~~~l~~~~~I~~~~~Ptl~~~~ 124 (305)
...+++++|+. +.|++++.+
T Consensus 72 ~~~~~~~~g~~--g~Pt~v~~~ 91 (98)
T cd02972 72 DTALARALGVT--GTPTFVVNG 91 (98)
T ss_pred HHHHHHHcCCC--CCCEEEECC
Confidence 35678999998 999999876
No 369
>KOG3425|consensus
Probab=91.93 E-value=0.059 Score=40.16 Aligned_cols=58 Identities=12% Similarity=0.036 Sum_probs=38.6
Q ss_pred CcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhH-HHHHHHcCCC---CCCCC
Q psy7938 43 GNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDH-QKILEFFGMS---KDEVP 118 (305)
Q Consensus 43 ~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~-~~l~~~~~I~---~~~~P 118 (305)
+||+.|.+..|.+.+. .++...++.|+.|++.+... ..-+..|.++ -.++|
T Consensus 43 SWCPdCV~AEPvi~~a-------------------------lk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vP 97 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEA-------------------------LKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVP 97 (128)
T ss_pred cCCchHHHhhHHHHHH-------------------------HHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecc
Confidence 6999999888877666 44556789999999873211 1223333332 14789
Q ss_pred eEEEEec
Q psy7938 119 SLRLIRL 125 (305)
Q Consensus 119 tl~~~~~ 125 (305)
|++=++.
T Consensus 98 TLlrw~~ 104 (128)
T KOG3425|consen 98 TLLRWKR 104 (128)
T ss_pred eeeEEcC
Confidence 9998874
No 370
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=91.90 E-value=3.2 Score=29.88 Aligned_cols=74 Identities=15% Similarity=0.239 Sum_probs=51.3
Q ss_pred CCcE-EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccccccCCcccccEEEEEeCCCceEEeeeCCCCHH
Q psy7938 190 SKHV-LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKLYAKDDNRVIDYNGERVLE 268 (305)
Q Consensus 190 ~~~~-lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~~~ 268 (305)
.++| ++.|..+. ..|..+...++++|..- +++.+...+.. +..|++.+..+|...-++|.|-..-.
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS---dkI~~~~~~~~---------~~~P~~~i~~~~~~~gIrF~GiP~Gh 84 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLS---DKITLEEDNDD---------ERKPSFSINRPGEDTGIRFAGIPMGH 84 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhC---CceEEEEecCC---------CCCCEEEEecCCCcccEEEEecCCch
Confidence 3444 55555555 89999999999888765 34555432321 14799999877744369999988888
Q ss_pred HHHHHHHh
Q psy7938 269 ALSNFVES 276 (305)
Q Consensus 269 ~l~~fi~~ 276 (305)
++..||..
T Consensus 85 Ef~Slila 92 (94)
T cd02974 85 EFTSLVLA 92 (94)
T ss_pred hHHHHHHH
Confidence 88888764
No 371
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=91.82 E-value=0.047 Score=39.89 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=15.4
Q ss_pred hhhhhcCcccccccccceeeee
Q psy7938 37 VTEFLAGNLKHSKFKKNLYIHL 58 (305)
Q Consensus 37 iv~f~a~wc~~c~~~~p~~~~~ 58 (305)
|+-|..+||++|++...++...
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~ 31 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL 31 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc
Confidence 4568899999998665444333
No 372
>PRK10329 glutaredoxin-like protein; Provisional
Probab=91.42 E-value=0.078 Score=37.14 Aligned_cols=73 Identities=14% Similarity=0.151 Sum_probs=44.1
Q ss_pred hhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCch-hHHHHHHHcCCCCCC
Q psy7938 38 TEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEE-DHQKILEFFGMSKDE 116 (305)
Q Consensus 38 v~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-~~~~l~~~~~I~~~~ 116 (305)
+-|..+||++|.+.+-++.+ ..|.|-.+|.+.. +........|.. .
T Consensus 4 ~lYt~~~Cp~C~~ak~~L~~-------------------------------~gI~~~~idi~~~~~~~~~~~~~g~~--~ 50 (81)
T PRK10329 4 TIYTRNDCVQCHATKRAMES-------------------------------RGFDFEMINVDRVPEAAETLRAQGFR--Q 50 (81)
T ss_pred EEEeCCCCHhHHHHHHHHHH-------------------------------CCCceEEEECCCCHHHHHHHHHcCCC--C
Confidence 35778999999765433222 2367777888721 122223445665 8
Q ss_pred CCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHHH
Q psy7938 117 VPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFL 152 (305)
Q Consensus 117 ~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~~ 152 (305)
+|++++ + + ... .+...+.|.+......
T Consensus 51 vPvv~i-~-~---~~~----~Gf~~~~l~~~~~~~~ 77 (81)
T PRK10329 51 LPVVIA-G-D---LSW----SGFRPDMINRLHPAPH 77 (81)
T ss_pred cCEEEE-C-C---EEE----ecCCHHHHHHHHHhhh
Confidence 998864 2 2 122 3567788888877664
No 373
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=91.33 E-value=0.096 Score=35.66 Aligned_cols=51 Identities=22% Similarity=0.182 Sum_probs=31.1
Q ss_pred hhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCc--hhHHHHHHHcCCCCC
Q psy7938 38 TEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDE--EDHQKILEFFGMSKD 115 (305)
Q Consensus 38 v~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~~~l~~~~~I~~~ 115 (305)
+-|..+||++|+...-.+.+. .|.+..+|.+. ....++.+..|-.
T Consensus 4 ~ly~~~~C~~C~ka~~~L~~~-------------------------------gi~~~~~di~~~~~~~~el~~~~g~~-- 50 (73)
T cd03027 4 TIYSRLGCEDCTAVRLFLREK-------------------------------GLPYVEINIDIFPERKAELEERTGSS-- 50 (73)
T ss_pred EEEecCCChhHHHHHHHHHHC-------------------------------CCceEEEECCCCHHHHHHHHHHhCCC--
Confidence 457889999998654333322 35566667662 2234465666665
Q ss_pred CCCeEE
Q psy7938 116 EVPSLR 121 (305)
Q Consensus 116 ~~Ptl~ 121 (305)
.+|++.
T Consensus 51 ~vP~v~ 56 (73)
T cd03027 51 VVPQIF 56 (73)
T ss_pred CcCEEE
Confidence 889773
No 374
>PRK13189 peroxiredoxin; Provisional
Probab=90.60 E-value=0.27 Score=41.56 Aligned_cols=66 Identities=18% Similarity=0.303 Sum_probs=39.8
Q ss_pred HHHHHHcCCCC-----CCCCeEEEEecCcCceecc--CCCCCCCHHHHHHHHHHHHcCcccccccCCCCCCccccCC
Q psy7938 104 QKILEFFGMSK-----DEVPSLRLIRLEEDMAKYK--PATPEISVDTVRSFVTEFLAGNLKQHLLSQPLPEDWDKNA 173 (305)
Q Consensus 104 ~~l~~~~~I~~-----~~~Ptl~~~~~~~~~~~~~--~~~~~~~~~~l~~fv~~~~~~~~~~~~~s~~~p~~~~~~~ 173 (305)
..+++.||+.. ...|+..+++..+.+.... .....++.+++.+.+......... ..--|.+|..+.
T Consensus 108 ~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq~~~~~----~~~~p~~w~~g~ 180 (222)
T PRK13189 108 GEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQTSDEK----GVATPANWPPND 180 (222)
T ss_pred cHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhhHhhc----CcCcCCCCCCCC
Confidence 68899999851 1468899998765543221 123467888888888765332111 233455665443
No 375
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=89.97 E-value=6.2 Score=29.03 Aligned_cols=103 Identities=18% Similarity=0.151 Sum_probs=73.8
Q ss_pred cEEecccChhHHH-hcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc------ccCCcc-cc
Q psy7938 174 VKVLVASNFDEIA-FDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL------EHTKIT-SF 245 (305)
Q Consensus 174 v~~l~~~~f~~~v-~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~------~~~~i~-~~ 245 (305)
++.++.++.-++= -+-++..++-|-.+--+.-.++.+.++++|+....++++.++=||-+.-+. +.|+|. .-
T Consensus 3 lrkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~ 82 (120)
T cd03074 3 LRKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFR 82 (120)
T ss_pred hhhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCC
Confidence 3444444443332 233567888888888888899999999999999888999999999888764 456654 35
Q ss_pred cEEEEEeCCCceEEeee--C---CCCHHHHHHHHHh
Q psy7938 246 PTLKLYAKDDNRVIDYN--G---ERVLEALSNFVES 276 (305)
Q Consensus 246 Ptl~~f~~g~~~~~~~~--g---~~~~~~l~~fi~~ 276 (305)
|.+=+.+-.....+.+. + ..+.+.|..||..
T Consensus 83 PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~Wied 118 (120)
T cd03074 83 PQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIED 118 (120)
T ss_pred CceeeEecccccceeEecccccccCcHHHHHHHHHh
Confidence 88888875544333332 2 3678999999975
No 376
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=89.61 E-value=2.3 Score=31.19 Aligned_cols=59 Identities=25% Similarity=0.491 Sum_probs=45.3
Q ss_pred eEEEEEEeCCchhHHHHHHHcCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHHH
Q psy7938 90 KVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFL 152 (305)
Q Consensus 90 ~v~~~~vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~~ 152 (305)
.+-|+..|.+ -...|-+..|+. ..-|.+++.+.... .+|.....+++.+.+.+|+.+++
T Consensus 57 ~~f~~a~ede--~tdsLRDf~nL~-d~~P~LviLDip~r-~~~v~~~eeIT~e~~~~fv~~yl 115 (116)
T cd03071 57 LLFFVAGEDD--MTDSLRDYTNLP-EAAPLLTILDMSAR-AKYVMDVEEITPAIVEAFVSDFL 115 (116)
T ss_pred eeeeeeccch--HHHHHHHhcCCC-ccCceEEEEecccc-ceEeCchHhcCHHHHHHHHHHhh
Confidence 3555555554 556666777774 68899999998776 78877767899999999999985
No 377
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=89.56 E-value=0.21 Score=36.30 Aligned_cols=17 Identities=6% Similarity=-0.199 Sum_probs=11.3
Q ss_pred cCcccccccccceeeee
Q psy7938 42 AGNLKHSKFKKNLYIHL 58 (305)
Q Consensus 42 a~wc~~c~~~~p~~~~~ 58 (305)
+|||++|+....++.+.
T Consensus 24 ~~~Cp~C~~ak~lL~~~ 40 (97)
T TIGR00365 24 FPQCGFSARAVQILKAC 40 (97)
T ss_pred CCCCchHHHHHHHHHHc
Confidence 38999998665444333
No 378
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=89.40 E-value=0.12 Score=35.06 Aligned_cols=15 Identities=13% Similarity=0.000 Sum_probs=11.6
Q ss_pred hhhhcCccccccccc
Q psy7938 38 TEFLAGNLKHSKFKK 52 (305)
Q Consensus 38 v~f~a~wc~~c~~~~ 52 (305)
+-|..+||++|...+
T Consensus 4 ~lys~~~Cp~C~~ak 18 (72)
T cd03029 4 SLFTKPGCPFCARAK 18 (72)
T ss_pred EEEECCCCHHHHHHH
Confidence 357789999997554
No 379
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=89.32 E-value=0.52 Score=39.33 Aligned_cols=32 Identities=28% Similarity=0.788 Sum_probs=27.0
Q ss_pred CCcEEEEEECCCChhhhhHHHHH---HHHHHHhCC
Q psy7938 190 SKHVLVEFYAPWCGHCKQLAPIY---DKLGEKFAD 221 (305)
Q Consensus 190 ~~~~lv~f~~~~C~~C~~~~~~~---~~la~~~~~ 221 (305)
+++.+|.|+.-.|+||..+.+.+ ..+.+.+.+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~ 71 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE 71 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC
Confidence 45779999999999999999866 778888854
No 380
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=89.10 E-value=0.19 Score=34.15 Aligned_cols=18 Identities=17% Similarity=0.006 Sum_probs=12.9
Q ss_pred hhhhcCccccccccccee
Q psy7938 38 TEFLAGNLKHSKFKKNLY 55 (305)
Q Consensus 38 v~f~a~wc~~c~~~~p~~ 55 (305)
+-|..+||++|...+.++
T Consensus 3 ~ly~~~~Cp~C~~ak~~L 20 (75)
T cd03418 3 EIYTKPNCPYCVRAKALL 20 (75)
T ss_pred EEEeCCCChHHHHHHHHH
Confidence 457789999997655333
No 381
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=89.01 E-value=3.3 Score=39.79 Aligned_cols=76 Identities=9% Similarity=0.145 Sum_probs=55.2
Q ss_pred CCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccccccCCcccccEEEEEeCCCceEEeeeCCCCHHH
Q psy7938 190 SKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKLYAKDDNRVIDYNGERVLEA 269 (305)
Q Consensus 190 ~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~~~~ 269 (305)
.+++-+.++.+.|..|..+...+++++..- +++.+...+.. ...|++.+..+|...-++|.|-..-.+
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s---~~i~~~~~~~~---------~~~p~~~~~~~~~~~~i~f~g~P~g~E 85 (517)
T PRK15317 18 ERPIELVASLDDSEKSAELKELLEEIASLS---DKITVEEDSLD---------VRKPSFSITRPGEDTGVRFAGIPMGHE 85 (517)
T ss_pred CCCEEEEEEeCCCchHHHHHHHHHHHHHhC---CceEEEEccCC---------CCCCEEEEEcCCccceEEEEecCccHH
Confidence 455555555558999999999999998775 35555332211 347999998766554799999888888
Q ss_pred HHHHHHhc
Q psy7938 270 LSNFVESG 277 (305)
Q Consensus 270 l~~fi~~~ 277 (305)
+..||...
T Consensus 86 f~s~i~~i 93 (517)
T PRK15317 86 FTSLVLAL 93 (517)
T ss_pred HHHHHHHH
Confidence 88888765
No 382
>KOG3414|consensus
Probab=88.96 E-value=0.68 Score=34.92 Aligned_cols=95 Identities=11% Similarity=0.111 Sum_probs=64.2
Q ss_pred HHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCC
Q psy7938 33 VRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGM 112 (305)
Q Consensus 33 ~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I 112 (305)
-+-+++.|--+|=+-|-++..++...++.+. +-..++-||.+ +-+.+.+.|++
T Consensus 23 ~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vs-------------------------nfa~Iylvdid--eV~~~~~~~~l 75 (142)
T KOG3414|consen 23 ERLVVIRFGRDWDPTCMKMDELLSSIAEDVS-------------------------NFAVIYLVDID--EVPDFVKMYEL 75 (142)
T ss_pred ceEEEEEecCCCCchHhhHHHHHHHHHHHHh-------------------------hceEEEEEecc--hhhhhhhhhcc
Confidence 4555667999999999877766666644442 34567777888 88999999999
Q ss_pred CCCCCCeEEEEecCcCc-eecc-CC----CC-CCCHHHHHHHHHHHHcCcc
Q psy7938 113 SKDEVPSLRLIRLEEDM-AKYK-PA----TP-EISVDTVRSFVTEFLAGNL 156 (305)
Q Consensus 113 ~~~~~Ptl~~~~~~~~~-~~~~-~~----~~-~~~~~~l~~fv~~~~~~~~ 156 (305)
. ..||+++|-++... ..+. ++ ++ --+.+++++.++-...|..
T Consensus 76 ~--~p~tvmfFfn~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~iyRga~ 124 (142)
T KOG3414|consen 76 Y--DPPTVMFFFNNKHMKIDLGTGDNNKINFAFEDKQEFIDIIETIYRGAR 124 (142)
T ss_pred c--CCceEEEEEcCceEEEeeCCCCCceEEEEeccHHHHHHHHHHHHHhhh
Confidence 8 88888887665431 1110 00 11 2356788888888776643
No 383
>PRK10638 glutaredoxin 3; Provisional
Probab=88.75 E-value=0.14 Score=35.81 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=30.9
Q ss_pred hhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCch--hHHHHHHHcCCCCC
Q psy7938 38 TEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEE--DHQKILEFFGMSKD 115 (305)
Q Consensus 38 v~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~--~~~~l~~~~~I~~~ 115 (305)
+-|..+||++|+...-.+.+. .+.+..+|.+.. ....+.+..|..
T Consensus 5 ~ly~~~~Cp~C~~a~~~L~~~-------------------------------gi~y~~~dv~~~~~~~~~l~~~~g~~-- 51 (83)
T PRK10638 5 EIYTKATCPFCHRAKALLNSK-------------------------------GVSFQEIPIDGDAAKREEMIKRSGRT-- 51 (83)
T ss_pred EEEECCCChhHHHHHHHHHHc-------------------------------CCCcEEEECCCCHHHHHHHHHHhCCC--
Confidence 346679999998665333332 244555666522 234556666776
Q ss_pred CCCeEE
Q psy7938 116 EVPSLR 121 (305)
Q Consensus 116 ~~Ptl~ 121 (305)
.+|++.
T Consensus 52 ~vP~i~ 57 (83)
T PRK10638 52 TVPQIF 57 (83)
T ss_pred CcCEEE
Confidence 899773
No 384
>PRK15000 peroxidase; Provisional
Probab=88.57 E-value=0.43 Score=39.68 Aligned_cols=115 Identities=11% Similarity=0.066 Sum_probs=58.6
Q ss_pred HHHhhhhhcC-cccccccccceeeeecccccccCCCCCcchhhhh---hhHHHHHhhcCc--eEEEEEEeCCchhHHHHH
Q psy7938 34 RSFVTEFLAG-NLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTV---RSFVTEFLAGNL--KVLFVTINTDEEDHQKIL 107 (305)
Q Consensus 34 ~~~iv~f~a~-wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~v~~~~vd~~~~~~~~l~ 107 (305)
+..|+.||+. ||+.|....+.+.+....++...-.---.+.|+. ..+.....+..+ .+.|-.+ +| ....++
T Consensus 35 k~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpll-sD--~~~~ia 111 (200)
T PRK15000 35 KTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMV-AD--VKREIQ 111 (200)
T ss_pred CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEE-EC--CCcHHH
Confidence 3566678984 9999976544444443333211000000111211 111222222112 2333322 33 346889
Q ss_pred HHcCCCC----CCCCeEEEEecCcCcee-ccC-CCCCCCHHHHHHHHHHH
Q psy7938 108 EFFGMSK----DEVPSLRLIRLEEDMAK-YKP-ATPEISVDTVRSFVTEF 151 (305)
Q Consensus 108 ~~~~I~~----~~~Ptl~~~~~~~~~~~-~~~-~~~~~~~~~l~~fv~~~ 151 (305)
+.||+.. -.+|+..+++..+.+.. +.. ....++.+++.+.+...
T Consensus 112 ~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 112 KAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 9999851 14799999986654332 222 23457888888888764
No 385
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=87.19 E-value=0.46 Score=35.12 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=30.8
Q ss_pred hhcCceEEEEEEeCCchhHHHHHHHcCCCCCCCCeEEEEecCcC
Q psy7938 85 LAGNLKVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEED 128 (305)
Q Consensus 85 ~~~~~~v~~~~vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~ 128 (305)
..+.+.+..+.++.. ....|..+||+. .+|++++|+.|.-
T Consensus 55 ~af~~~~~~avv~~~--~e~~L~~r~gv~--~~PaLvf~R~g~~ 94 (107)
T PF07449_consen 55 KAFPGRFRGAVVARA--AERALAARFGVR--RWPALVFFRDGRY 94 (107)
T ss_dssp CTSTTSEEEEEEEHH--HHHHHHHHHT-T--SSSEEEEEETTEE
T ss_pred HhhhCccceEEECch--hHHHHHHHhCCc--cCCeEEEEECCEE
Confidence 445577777777744 668899999998 9999999998854
No 386
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=87.08 E-value=0.18 Score=35.23 Aligned_cols=53 Identities=11% Similarity=0.333 Sum_probs=35.2
Q ss_pred ceEEEEEEeCCchhHHHHHHHcCCCCCCCCeEEEEecCcC--ceeccCCCCCCCHHHHHHHHH
Q psy7938 89 LKVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEED--MAKYKPATPEISVDTVRSFVT 149 (305)
Q Consensus 89 ~~v~~~~vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~--~~~~~~~~~~~~~~~l~~fv~ 149 (305)
..+.+-.||.+ +++.+..+||. .+|-+.+=+.++. .... .+.++.+.|.+|++
T Consensus 27 ~~~~l~~vDI~--~d~~l~~~Y~~---~IPVl~~~~~~~~~~~~~~---~~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 27 FPFELEEVDID--EDPELFEKYGY---RIPVLHIDGIRQFKEQEEL---KWRFDEEQLRAWLE 81 (81)
T ss_dssp STCEEEEEETT--TTHHHHHHSCT---STSEEEETT-GGGCTSEEE---ESSB-HHHHHHHHH
T ss_pred cCceEEEEECC--CCHHHHHHhcC---CCCEEEEcCccccccccee---CCCCCHHHHHHHhC
Confidence 34788899999 77889999998 6997654432111 0111 25788899998874
No 387
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=86.41 E-value=1.6 Score=34.37 Aligned_cols=49 Identities=14% Similarity=0.300 Sum_probs=33.6
Q ss_pred EEEEECC------CChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc------ccCCc----ccccEEEE
Q psy7938 194 LVEFYAP------WCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL------EHTKI----TSFPTLKL 250 (305)
Q Consensus 194 lv~f~~~------~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~------~~~~i----~~~Ptl~~ 250 (305)
+|.|+++ +|++|..++..|+.+ +|.+..+|.+.+.. +..+- ..+|.+++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~--------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF--------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 4567777 899999998888765 45667777765432 22232 57888876
No 388
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=86.37 E-value=5.9 Score=38.03 Aligned_cols=77 Identities=16% Similarity=0.186 Sum_probs=54.5
Q ss_pred CCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccccccCCcccccEEEEEeCCCceEEeeeCCCCHHH
Q psy7938 190 SKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKLYAKDDNRVIDYNGERVLEA 269 (305)
Q Consensus 190 ~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~~~~ 269 (305)
.+++-+.++.+.|..|..+...+++++..- +++.+...+.+ ....|++.+..+|...-++|.|-..-.+
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s---~ki~~~~~~~~--------~~~~p~~~~~~~~~~~~i~f~g~P~g~E 86 (515)
T TIGR03140 18 ENPVTLVLSAGSHEKSKELLELLDEIASLS---DKISLTQNTAD--------TLRKPSFTILRDGADTGIRFAGIPGGHE 86 (515)
T ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHhC---CCeEEEEecCC--------cCCCCeEEEecCCcccceEEEecCCcHH
Confidence 445545444447999999999999998775 35655433321 1356999998766544799999888888
Q ss_pred HHHHHHhc
Q psy7938 270 LSNFVESG 277 (305)
Q Consensus 270 l~~fi~~~ 277 (305)
+..||..-
T Consensus 87 f~s~i~~i 94 (515)
T TIGR03140 87 FTSLVLAI 94 (515)
T ss_pred HHHHHHHH
Confidence 88888864
No 389
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=85.98 E-value=4.2 Score=28.91 Aligned_cols=56 Identities=13% Similarity=0.148 Sum_probs=38.0
Q ss_pred HhhcCceEEEEEEeCCchhHHHHHHHcCCCCCCCCeEEEEecC-cCceeccCCCCCCCHHHHHHHHHH
Q psy7938 84 FLAGNLKVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLE-EDMAKYKPATPEISVDTVRSFVTE 150 (305)
Q Consensus 84 ~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~-~~~~~~~~~~~~~~~~~l~~fv~~ 150 (305)
+...++.+.|+.+.. ..++..+++. -|++++|+.. +....| .|..+.++|.+|+..
T Consensus 40 A~~~r~~~~F~~~~~-----~~~~~~~~~~---~~~i~l~~~~~~~~~~y---~g~~~~~~l~~fi~~ 96 (97)
T cd02981 40 AESLRDDYGFGHTSD-----KEVAKKLKVK---PGSVVLFKPFEEEPVEY---DGEFTEESLVEFIKD 96 (97)
T ss_pred HHhcccCCeEEEECh-----HHHHHHcCCC---CCceEEeCCcccCCccC---CCCCCHHHHHHHHHh
Confidence 344445678876652 4567778874 5899999875 333445 366778999999864
No 390
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=85.61 E-value=0.66 Score=33.05 Aligned_cols=28 Identities=32% Similarity=0.345 Sum_probs=15.8
Q ss_pred EEEEEEeCC--chhHHHHHHHcCCCCCCCCeE
Q psy7938 91 VLFVTINTD--EEDHQKILEFFGMSKDEVPSL 120 (305)
Q Consensus 91 v~~~~vd~~--~~~~~~l~~~~~I~~~~~Ptl 120 (305)
+.|..+|.+ ......+.+..|-. .+|++
T Consensus 38 i~y~~idv~~~~~~~~~l~~~~g~~--tvP~v 67 (90)
T cd03028 38 VDFGTFDILEDEEVRQGLKEYSNWP--TFPQL 67 (90)
T ss_pred CCeEEEEcCCCHHHHHHHHHHhCCC--CCCEE
Confidence 455556654 22234455555765 89987
No 391
>PHA03075 glutaredoxin-like protein; Provisional
Probab=85.02 E-value=1.5 Score=32.51 Aligned_cols=29 Identities=24% Similarity=0.654 Sum_probs=26.1
Q ss_pred CcEEEEEECCCChhhhhHHHHHHHHHHHh
Q psy7938 191 KHVLVEFYAPWCGHCKQLAPIYDKLGEKF 219 (305)
Q Consensus 191 ~~~lv~f~~~~C~~C~~~~~~~~~la~~~ 219 (305)
|.+++.|.-|.|+-|......+.++..+|
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 56899999999999999999998887776
No 392
>KOG3171|consensus
Probab=83.25 E-value=0.33 Score=40.11 Aligned_cols=84 Identities=15% Similarity=0.276 Sum_probs=54.2
Q ss_pred hhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCCCCC
Q psy7938 37 VTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMSKDE 116 (305)
Q Consensus 37 iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~~~~ 116 (305)
+|.-|-+...-|-.++..+.-++... ..|.|+++-.+ +-...++|..+ .
T Consensus 163 ~VhIYEdgi~gcealn~~~~cLAAey--------------------------P~vKFckikss---~~gas~~F~~n--~ 211 (273)
T KOG3171|consen 163 VVHIYEDGIKGCEALNSSLTCLAAEY--------------------------PIVKFCKIKSS---NTGASDRFSLN--V 211 (273)
T ss_pred EEEEecCCCchHHHHhhhHHHhhccC--------------------------CceeEEEeeec---cccchhhhccc--C
Confidence 44567777777766654444442222 67999999876 33456889988 9
Q ss_pred CCeEEEEecCcCceeccCC----CCCCCHHHHHHHHHHH
Q psy7938 117 VPSLRLIRLEEDMAKYKPA----TPEISVDTVRSFVTEF 151 (305)
Q Consensus 117 ~Ptl~~~~~~~~~~~~~~~----~~~~~~~~l~~fv~~~ 151 (305)
+|++.||+.|+-+..|.-- ..+.....+..|+..+
T Consensus 212 lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 212 LPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred CceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 9999999998765555310 1234445566666554
No 393
>PRK10824 glutaredoxin-4; Provisional
Probab=82.22 E-value=1 Score=33.78 Aligned_cols=16 Identities=6% Similarity=-0.224 Sum_probs=11.0
Q ss_pred Ccccccccccceeeee
Q psy7938 43 GNLKHSKFKKNLYIHL 58 (305)
Q Consensus 43 ~wc~~c~~~~p~~~~~ 58 (305)
|||++|++...++..+
T Consensus 28 p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 28 PSCGFSAQAVQALSAC 43 (115)
T ss_pred CCCchHHHHHHHHHHc
Confidence 6999998665444444
No 394
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=81.24 E-value=0.55 Score=32.74 Aligned_cols=15 Identities=20% Similarity=0.016 Sum_probs=11.2
Q ss_pred hhhhcCccccccccc
Q psy7938 38 TEFLAGNLKHSKFKK 52 (305)
Q Consensus 38 v~f~a~wc~~c~~~~ 52 (305)
+-|.-++|++|.+..
T Consensus 4 ~iyt~~~CPyC~~ak 18 (80)
T COG0695 4 TIYTKPGCPYCKRAK 18 (80)
T ss_pred EEEECCCCchHHHHH
Confidence 346678999997654
No 395
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=81.17 E-value=1.7 Score=35.92 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=30.5
Q ss_pred hHHHHHHHcCCCC----CCCCeEEEEecCcCceecc-C-CCCCCCHHHHHHHHHHH
Q psy7938 102 DHQKILEFFGMSK----DEVPSLRLIRLEEDMAKYK-P-ATPEISVDTVRSFVTEF 151 (305)
Q Consensus 102 ~~~~l~~~~~I~~----~~~Ptl~~~~~~~~~~~~~-~-~~~~~~~~~l~~fv~~~ 151 (305)
....+++.||+.. -.+|+..+++....+.... . ....++.+++.+.+...
T Consensus 108 ~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 108 KTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred cHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 3478899999841 1368888998765433221 1 12345666777666654
No 396
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=81.08 E-value=10 Score=25.53 Aligned_cols=71 Identities=11% Similarity=0.123 Sum_probs=45.2
Q ss_pred EEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc---ccCCcccccEEEEEeCCCceEEeeeCCCCHHHHHH
Q psy7938 196 EFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL---EHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSN 272 (305)
Q Consensus 196 ~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~---~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~~~~l~~ 272 (305)
+|+.++|+.|.+++-.++...- .+.+..++...... ....-..+|++. .+|. .+ .+...|.+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i------~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~--~l-----~dS~~I~~ 65 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGI------PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGE--VL-----TDSAAIIE 65 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTE------EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTE--EE-----ESHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCC------eEEEeccCcccchhHHHhhcccccceEEE--ECCE--EE-----eCHHHHHH
Confidence 4778999999998755554422 34555555444322 334456899997 4442 22 36778999
Q ss_pred HHHhcCCCC
Q psy7938 273 FVESGGKEG 281 (305)
Q Consensus 273 fi~~~~~~~ 281 (305)
+|.+....+
T Consensus 66 yL~~~~~~~ 74 (75)
T PF13417_consen 66 YLEERYPGP 74 (75)
T ss_dssp HHHHHSTSS
T ss_pred HHHHHcCCC
Confidence 999887543
No 397
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=81.06 E-value=3.4 Score=40.29 Aligned_cols=77 Identities=13% Similarity=0.210 Sum_probs=57.6
Q ss_pred ecccChhHHHhcCCCcEEEEEECCCChhhhhHHHHH---HHHHHHhCCCCceEEEEEeCCcccc--ccC--------Ccc
Q psy7938 177 LVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIY---DKLGEKFADRDDITIAKIDATVNEL--EHT--------KIT 243 (305)
Q Consensus 177 l~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~id~~~~~~--~~~--------~i~ 243 (305)
-..+.|.+.- ..++|+|+....+||..|..|...= .++|..+ +.+++-++||.++-+. .-| +--
T Consensus 31 W~~eAf~~A~-~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~l--N~~FV~IKVDREERPDvD~~Ym~~~q~~tG~G 107 (667)
T COG1331 31 WGEEAFAKAK-EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAIL--NENFVPVKVDREERPDVDSLYMNASQAITGQG 107 (667)
T ss_pred cCHHHHHHHH-HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHH--HhCceeeeEChhhccCHHHHHHHHHHHhccCC
Confidence 3456777654 6799999999999999999996543 5688888 4589999999887553 111 234
Q ss_pred cccEEEEEeCCCc
Q psy7938 244 SFPTLKLYAKDDN 256 (305)
Q Consensus 244 ~~Ptl~~f~~g~~ 256 (305)
+-|--++..++++
T Consensus 108 GWPLtVfLTPd~k 120 (667)
T COG1331 108 GWPLTVFLTPDGK 120 (667)
T ss_pred CCceeEEECCCCc
Confidence 7898888887776
No 398
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=80.10 E-value=3.4 Score=27.55 Aligned_cols=50 Identities=10% Similarity=0.155 Sum_probs=30.8
Q ss_pred EEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc--c-ccCCcccccEEEE
Q psy7938 195 VEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE--L-EHTKITSFPTLKL 250 (305)
Q Consensus 195 v~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~--~-~~~~i~~~Ptl~~ 250 (305)
+.|+.+||++|.+.+-.+.+..- .+.+..+|..... . +......+|++..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl------~~e~~~v~~~~~~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI------TVELREVELKNKPAEMLAASPKGTVPVLVL 54 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC------CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE
Confidence 46788999999998766555432 3445555543222 1 3334567899864
No 399
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=79.79 E-value=6.3 Score=26.64 Aligned_cols=74 Identities=11% Similarity=0.209 Sum_probs=40.9
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCc-cccccCCcccccEEEEEeCCCceEEeeeCCCCHHHHHH
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATV-NELEHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSN 272 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~-~~~~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~~~~l~~ 272 (305)
+..|+.+.|+.|++.+-.+.+..-.+ ....+|... .+...-+...+|++..=..|+. ... .+...|.+
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~y------~~~~~~~~~~~~~~~~~~~~vP~l~~~~~~~~-~~l----~eS~~I~~ 70 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIPY------EVVEVNPVSRKEIKWSSYKKVPILRVESGGDG-QQL----VDSSVIIS 70 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCce------EEEECCchhHHHHHHhCCCccCEEEECCCCCc-cEE----EcHHHHHH
Confidence 45688899999999886665553332 233333211 1122234567898875322111 121 34567888
Q ss_pred HHHhcC
Q psy7938 273 FVESGG 278 (305)
Q Consensus 273 fi~~~~ 278 (305)
+|.+..
T Consensus 71 yL~~~~ 76 (77)
T cd03040 71 TLKTYL 76 (77)
T ss_pred HHHHHc
Confidence 887653
No 400
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=78.26 E-value=10 Score=25.77 Aligned_cols=71 Identities=8% Similarity=0.029 Sum_probs=39.2
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcc---cc-ccCCcccccEEEEEeCCCceEEeeeCCCCHHH
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVN---EL-EHTKITSFPTLKLYAKDDNRVIDYNGERVLEA 269 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~---~~-~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~~~~ 269 (305)
+..|+.++|++|.+.+-.+.+..-.+ ....++.... +. ..-....+|+++. .+|+. . ..+...
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y------~~~~v~~~~~~~~~~~~~~p~~~vP~l~~-~~~~~--~----l~es~~ 68 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDV------ILYPCPKGSPKRDKFLEKGGKVQVPYLVD-PNTGV--Q----MFESAD 68 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcE------EEEECCCChHHHHHHHHhCCCCcccEEEe-CCCCe--E----EEcHHH
Confidence 35678889999999876666553322 2233322111 11 2224467898854 22222 2 134567
Q ss_pred HHHHHHhc
Q psy7938 270 LSNFVESG 277 (305)
Q Consensus 270 l~~fi~~~ 277 (305)
|.+||.+.
T Consensus 69 I~~yL~~~ 76 (77)
T cd03041 69 IVKYLFKT 76 (77)
T ss_pred HHHHHHHh
Confidence 88888754
No 401
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=78.07 E-value=2.2 Score=31.42 Aligned_cols=78 Identities=9% Similarity=-0.070 Sum_probs=43.1
Q ss_pred EEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc---------ccCCcccccEEEEEeCCCceEEeee---
Q psy7938 195 VEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL---------EHTKITSFPTLKLYAKDDNRVIDYN--- 262 (305)
Q Consensus 195 v~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~---------~~~~i~~~Ptl~~f~~g~~~~~~~~--- 262 (305)
..|+.++|+.|++....+++- ++.+-.+|..+.+. ...+ .--++...+. ..+--
T Consensus 2 ~iy~~~~C~~crka~~~L~~~--------~i~~~~~di~~~p~s~~eL~~~l~~~g-----~~~li~~~~~-~yk~l~l~ 67 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR--------GVAYTFHDYRKDGLDAATLERWLAKVG-----WETLLNKRGT-TWRKLDDA 67 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc--------CCCeEEEecccCCCCHHHHHHHHHHhC-----hHHHHccCch-HHHhCChh
Confidence 579999999999987766654 23334445444332 2223 1233444333 11111
Q ss_pred --CCCCHHHHHHHHHhcCCCCCCCCC
Q psy7938 263 --GERVLEALSNFVESGGKEGGLPSG 286 (305)
Q Consensus 263 --g~~~~~~l~~fi~~~~~~~~~~~~ 286 (305)
...+.+++.+.+.++...-..|-.
T Consensus 68 ~~~~~s~~e~~~~l~~~p~LikRPIi 93 (105)
T cd03035 68 QKAALDAAKAIALMLEHPSLIKRPVL 93 (105)
T ss_pred hhccCCHHHHHHHHHhCcCeeecceE
Confidence 134567788888888765444433
No 402
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=77.78 E-value=2.2 Score=31.19 Aligned_cols=81 Identities=14% Similarity=0.071 Sum_probs=45.6
Q ss_pred EEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc------ccCCcccccEEEEEeCCCceEEee-----eC
Q psy7938 195 VEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL------EHTKITSFPTLKLYAKDDNRVIDY-----NG 263 (305)
Q Consensus 195 v~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~------~~~~i~~~Ptl~~f~~g~~~~~~~-----~g 263 (305)
..|+.++|+.|++....+++. ++.+..+|...+.. .-.+-.+.+.--++...+. ...- ..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~-~~~~l~~~~~~ 72 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH--------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGT-PYRKLGLADKD 72 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc--------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCc-hHHHcCCcccc
Confidence 579999999999988777764 33344455544332 1112223233334443322 1111 23
Q ss_pred CCCHHHHHHHHHhcCCCCCCC
Q psy7938 264 ERVLEALSNFVESGGKEGGLP 284 (305)
Q Consensus 264 ~~~~~~l~~fi~~~~~~~~~~ 284 (305)
..+.+++.++|.++...-..|
T Consensus 73 ~ls~~e~~~~l~~~p~LikRP 93 (105)
T cd02977 73 ELSDEEALELMAEHPKLIKRP 93 (105)
T ss_pred CCCHHHHHHHHHhCcCeeeCC
Confidence 567889999999887654433
No 403
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=76.43 E-value=0.5 Score=36.78 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=24.4
Q ss_pred ccCCcccccEEEEEeCCCceEEeeeCCCCHHHHHHHH
Q psy7938 238 EHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFV 274 (305)
Q Consensus 238 ~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~~~~l~~fi 274 (305)
.+++|.++||+++ +| ..+.|..+.+.|.+.|
T Consensus 123 ~~~gi~gtPt~~v--~g----~~~~G~~~~~~l~~~i 153 (154)
T cd03023 123 RALGITGTPAFII--GD----TVIPGAVPADTLKEAI 153 (154)
T ss_pred HHcCCCcCCeEEE--CC----EEecCCCCHHHHHHHh
Confidence 6789999999887 33 2578888888888765
No 404
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=76.23 E-value=13 Score=28.60 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=36.1
Q ss_pred EEEeCCccccccCCcccccEEEEEeCCC----------ceEEeeeCCCCHHHHHHHHHhcC
Q psy7938 228 AKIDATVNELEHTKITSFPTLKLYAKDD----------NRVIDYNGERVLEALSNFVESGG 278 (305)
Q Consensus 228 ~~id~~~~~~~~~~i~~~Ptl~~f~~g~----------~~~~~~~g~~~~~~l~~fi~~~~ 278 (305)
+.+.++..-.++|+|+.+|++++.+++. .......|..+.+.-.+.+.+.+
T Consensus 55 ~~v~IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~g 115 (130)
T TIGR02742 55 SGVQIDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQDG 115 (130)
T ss_pred CcEEEChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHhC
Confidence 3344455555999999999999998874 11456678887777777676554
No 405
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=75.42 E-value=5.9 Score=26.29 Aligned_cols=66 Identities=9% Similarity=0.094 Sum_probs=35.9
Q ss_pred EEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEEEeCCCceEEeeeCCCCHHHHHHH
Q psy7938 196 EFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNF 273 (305)
Q Consensus 196 ~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~~~~l~~f 273 (305)
.|+.++|++|.+.+-.+...+-.+ ....++...... +..+-..+|++.. ++| . . ..+...|.+|
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~~------~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~-~-~-----l~es~aI~~y 68 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIPV------EQIILQNDDEATPIRMIGAKQVPILEK-DDG-S-F-----MAESLDIVAF 68 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCCe------EEEECCCCchHHHHHhcCCCccCEEEe-CCC-e-E-----eehHHHHHHH
Confidence 577889999999876665553332 333344322111 2233456888743 323 2 1 2345567777
Q ss_pred HH
Q psy7938 274 VE 275 (305)
Q Consensus 274 i~ 275 (305)
|.
T Consensus 69 L~ 70 (71)
T cd03037 69 ID 70 (71)
T ss_pred Hh
Confidence 64
No 406
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=74.88 E-value=6.5 Score=31.08 Aligned_cols=45 Identities=11% Similarity=0.173 Sum_probs=30.6
Q ss_pred CCcEEEEEECCCChhhhhH-HHHHHHHHHHhCCCCceEEEEEeCCc
Q psy7938 190 SKHVLVEFYAPWCGHCKQL-APIYDKLGEKFADRDDITIAKIDATV 234 (305)
Q Consensus 190 ~~~~lv~f~~~~C~~C~~~-~~~~~~la~~~~~~~~v~~~~id~~~ 234 (305)
+..+|+.|.+.||+.|... .+.|.+...++...+-..++.+..+.
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~ 75 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVND 75 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCC
Confidence 3456666668899999998 99999999998653311244444443
No 407
>KOG2507|consensus
Probab=74.75 E-value=21 Score=32.86 Aligned_cols=87 Identities=14% Similarity=0.088 Sum_probs=59.9
Q ss_pred cCCCcEEEEEECCCChhhhhHH--HHHHHHH-HHhCCCCceEEEEEeCCcccc----ccCCcccccEEEEEeCCCceEEe
Q psy7938 188 DKSKHVLVEFYAPWCGHCKQLA--PIYDKLG-EKFADRDDITIAKIDATVNEL----EHTKITSFPTLKLYAKDDNRVID 260 (305)
Q Consensus 188 ~~~~~~lv~f~~~~C~~C~~~~--~~~~~la-~~~~~~~~v~~~~id~~~~~~----~~~~i~~~Ptl~~f~~g~~~~~~ 260 (305)
..++.+||.|-+........|. ..+...- ..+ ...++.++|+.....+ .-|.+..+|+++++...+.....
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~l--s~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLev 93 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSL--SKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEV 93 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhh--hcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEE
Confidence 3456777777777666665554 2232222 222 2468888888877766 56778899999999988876777
Q ss_pred eeCCCCHHHHHHHHHh
Q psy7938 261 YNGERVLEALSNFVES 276 (305)
Q Consensus 261 ~~g~~~~~~l~~fi~~ 276 (305)
..|....++|..=|.+
T Consensus 94 itg~v~adeL~~~i~K 109 (506)
T KOG2507|consen 94 ITGFVTADELASSIEK 109 (506)
T ss_pred eeccccHHHHHHHHHH
Confidence 8898887777665543
No 408
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=73.01 E-value=6.9 Score=32.98 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=36.0
Q ss_pred ccCCcccccEEEEEeCCCceEEeeeCCCCHHHHHHHHHhcCCCCCCCCCC
Q psy7938 238 EHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVESGGKEGGLPSGA 287 (305)
Q Consensus 238 ~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~~~~l~~fi~~~~~~~~~~~~~ 287 (305)
.+.+|+++|++++ ++ -...+|..+.+-+..-|++.......+...
T Consensus 178 ~e~gI~gVP~fv~---d~--~~~V~Gaq~~~v~~~al~~~~~~~~~~~~~ 222 (225)
T COG2761 178 QEMGIRGVPTFVF---DG--KYAVSGAQPYDVLEDALRQLLAEKAEEHKP 222 (225)
T ss_pred HHCCCccCceEEE---cC--cEeecCCCCHHHHHHHHHHHHhcccccCCC
Confidence 7899999999999 32 366799999999999999887766655443
No 409
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=72.64 E-value=3.7 Score=30.48 Aligned_cols=84 Identities=14% Similarity=0.193 Sum_probs=49.1
Q ss_pred EEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc------ccCCcccccEEEEEeCCCceEEe---eeC--
Q psy7938 195 VEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL------EHTKITSFPTLKLYAKDDNRVID---YNG-- 263 (305)
Q Consensus 195 v~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~------~~~~i~~~Ptl~~f~~g~~~~~~---~~g-- 263 (305)
..|+.++|+.|++....|++. ++.+-.+|...+.. .-++..+.|..-+++..+.. .+ ..+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~-~~~l~~~~~~ 72 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH--------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKS-YRELGLKDKL 72 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc--------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCch-HHhCCccccc
Confidence 468999999999988777663 34445555554442 12223345655566554431 11 111
Q ss_pred -CCCHHHHHHHHHhcCCCCCCCCCC
Q psy7938 264 -ERVLEALSNFVESGGKEGGLPSGA 287 (305)
Q Consensus 264 -~~~~~~l~~fi~~~~~~~~~~~~~ 287 (305)
..+.+.+.+.|.++...-..|-.-
T Consensus 73 ~~~s~~e~~~~l~~~p~LikRPIi~ 97 (111)
T cd03036 73 PSLSEEEALELLSSDGMLIKRPFVV 97 (111)
T ss_pred ccCCHHHHHHHHHhCcCeeeCCEEE
Confidence 235677888888887655544443
No 410
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=72.07 E-value=25 Score=25.36 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=39.5
Q ss_pred HHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCCCCCCCeEEEEec-CcCceeccCCCCCCCHHHHHHHHHHH
Q psy7938 80 FVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRL-EEDMAKYKPATPEISVDTVRSFVTEF 151 (305)
Q Consensus 80 ~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~~-~~~~~~~~~~~~~~~~~~l~~fv~~~ 151 (305)
+...+...+....|+.... ..++..+++ ..|++++++. .+....|. .|..+.+.|.+||...
T Consensus 38 F~~vA~~~R~d~~F~~~~~-----~~~~~~~~~---~~~~i~l~~~~~e~~~~y~--~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 38 FEEAAEEFHPYIKFFATFD-----SKVAKKLGL---KMNEVDFYEPFMEEPVTIP--DKPYSEEELVDFVEEH 100 (102)
T ss_pred HHHHHHhhhcCCEEEEECc-----HHHHHHcCC---CCCcEEEeCCCCCCCcccC--CCCCCHHHHHHHHHHh
Confidence 3344444446677765443 356778888 5799999976 33322342 3567899999999764
No 411
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=71.86 E-value=5.9 Score=32.11 Aligned_cols=27 Identities=30% Similarity=0.689 Sum_probs=22.1
Q ss_pred EEECCCChhhhhHHHHHHHHHHHhCCC
Q psy7938 196 EFYAPWCGHCKQLAPIYDKLGEKFADR 222 (305)
Q Consensus 196 ~f~~~~C~~C~~~~~~~~~la~~~~~~ 222 (305)
+|..|.|+.|-.+.|.+.++...+...
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~ 28 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK 28 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc
Confidence 589999999999999999999999653
No 412
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=71.41 E-value=4.8 Score=30.90 Aligned_cols=22 Identities=18% Similarity=0.520 Sum_probs=17.8
Q ss_pred EEEEECCCChhhhhHHHHHHHH
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKL 215 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~l 215 (305)
+..|+.++|+.|++....+.+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~ 23 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH 23 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 5678999999999987666654
No 413
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.98 E-value=6.9 Score=26.72 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=18.8
Q ss_pred EEEECCCChhhhhHHHHHHHHHH
Q psy7938 195 VEFYAPWCGHCKQLAPIYDKLGE 217 (305)
Q Consensus 195 v~f~~~~C~~C~~~~~~~~~la~ 217 (305)
+.|++..|+.|..+...++.+.-
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v 27 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNV 27 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCC
Confidence 67999999999988877776643
No 414
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=70.40 E-value=4.1 Score=33.01 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=15.7
Q ss_pred HHHHHHcCCCCCCCCeEEEEecC
Q psy7938 104 QKILEFFGMSKDEVPSLRLIRLE 126 (305)
Q Consensus 104 ~~l~~~~~I~~~~~Ptl~~~~~~ 126 (305)
..+++++||+ ++||+++|+..
T Consensus 137 ~~la~~m~I~--~~Ptlvi~~~~ 157 (176)
T PF13743_consen 137 QQLAREMGIT--GFPTLVIFNEN 157 (176)
T ss_dssp HHHHHHTT-S--SSSEEEEE---
T ss_pred HHHHHHcCCC--CCCEEEEEecc
Confidence 5699999998 99999999943
No 415
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=69.75 E-value=21 Score=30.67 Aligned_cols=69 Identities=12% Similarity=0.067 Sum_probs=39.3
Q ss_pred cEEecccChhHHHhcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccccccCCcccccEEEEEeC
Q psy7938 174 VKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKLYAK 253 (305)
Q Consensus 174 v~~l~~~~f~~~v~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~~~~~i~~~Ptl~~f~~ 253 (305)
...++..++. ..+|+.+++..+.||+.|...+=.+-.+-.+|.+- .+....-|. .+ .-..+|++.+..-
T Consensus 46 ~~kvsn~d~~----~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~-~l~~~~S~~--~d----~~pn~Ptl~F~~~ 114 (249)
T PF06053_consen 46 FFKVSNQDLA----PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNF-SLEYHYSDP--YD----NYPNTPTLIFNNY 114 (249)
T ss_pred eeeecCcccC----CCCeeEEEEEecccCccchhhHHHHHHHHHhcCCe-eeEEeecCc--cc----CCCCCCeEEEecC
Confidence 4445444432 56899999999999999988754444444455321 233322222 11 1235688777654
No 416
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=67.56 E-value=19 Score=22.82 Aligned_cols=50 Identities=14% Similarity=0.209 Sum_probs=30.4
Q ss_pred EEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc---c-ccCCcccccEEEE
Q psy7938 195 VEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE---L-EHTKITSFPTLKL 250 (305)
Q Consensus 195 v~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~---~-~~~~i~~~Ptl~~ 250 (305)
..|+.++|+.|.+.+-.+....- .+....++..... . .......+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i------~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGL------PYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC------CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 35788899999988766666532 2344444433221 1 2445668898765
No 417
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=67.32 E-value=1.5 Score=40.69 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=12.5
Q ss_pred hhhhhcCccccccccc
Q psy7938 37 VTEFLAGNLKHSKFKK 52 (305)
Q Consensus 37 iv~f~a~wc~~c~~~~ 52 (305)
|+-|..+||++|+...
T Consensus 4 V~vys~~~Cp~C~~aK 19 (410)
T PRK12759 4 VRIYTKTNCPFCDLAK 19 (410)
T ss_pred EEEEeCCCCHHHHHHH
Confidence 4468899999997554
No 418
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=66.96 E-value=63 Score=25.69 Aligned_cols=87 Identities=14% Similarity=0.114 Sum_probs=54.5
Q ss_pred CCcEEEEEE-CCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc-----------------------cccCCcc--
Q psy7938 190 SKHVLVEFY-APWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE-----------------------LEHTKIT-- 243 (305)
Q Consensus 190 ~~~~lv~f~-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~-----------------------~~~~~i~-- 243 (305)
++.|+++|| ..+++-|-...-.|+....+|... +..+.-|-.+... ++.|++.
T Consensus 30 Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~-~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~ 108 (157)
T COG1225 30 GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL-GAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGE 108 (157)
T ss_pred CCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccc
Confidence 567777777 557888988888888888888653 4444444333322 1334442
Q ss_pred ----------cccEEEEEeCCCceEEeeeC---CCCHHHHHHHHHhc
Q psy7938 244 ----------SFPTLKLYAKDDNRVIDYNG---ERVLEALSNFVESG 277 (305)
Q Consensus 244 ----------~~Ptl~~f~~g~~~~~~~~g---~~~~~~l~~fi~~~ 277 (305)
..++.+++.+++.....+.. .-..+.+.+.|.+.
T Consensus 109 k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 109 KKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred cccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 36788888887775444533 23456677666654
No 419
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=65.76 E-value=10 Score=25.00 Aligned_cols=50 Identities=14% Similarity=0.272 Sum_probs=30.0
Q ss_pred EEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcc-----cc-ccCCcccccEEEE
Q psy7938 195 VEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVN-----EL-EHTKITSFPTLKL 250 (305)
Q Consensus 195 v~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~-----~~-~~~~i~~~Ptl~~ 250 (305)
..|+.++|+.|++++-.+....-.+ ....++.... .. +......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~------~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDV------PLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCc------eEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 4678889999999887766653333 3334443221 11 2334457899875
No 420
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=65.53 E-value=15 Score=31.60 Aligned_cols=42 Identities=12% Similarity=0.275 Sum_probs=29.9
Q ss_pred hHHHHHHHcCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHH
Q psy7938 102 DHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFV 148 (305)
Q Consensus 102 ~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv 148 (305)
++..+++++||+ +.|++++-+..+.+... .|-.+.++|.+.+
T Consensus 207 ~n~~l~~~lGv~--GTPaiv~~d~~G~~~~v---~G~~~~~~L~~~l 248 (251)
T PRK11657 207 DNQKLMDDLGAN--ATPAIYYMDKDGTLQQV---VGLPDPAQLAEIM 248 (251)
T ss_pred HHHHHHHHcCCC--CCCEEEEECCCCCEEEe---cCCCCHHHHHHHh
Confidence 567799999998 99999988743322223 3566777787765
No 421
>PRK12559 transcriptional regulator Spx; Provisional
Probab=65.46 E-value=7.6 Score=29.82 Aligned_cols=22 Identities=14% Similarity=0.433 Sum_probs=17.8
Q ss_pred EEEEECCCChhhhhHHHHHHHH
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKL 215 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~l 215 (305)
+..|+.++|+.|++....|++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~ 23 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN 23 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 5679999999999987666654
No 422
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=65.15 E-value=6.3 Score=29.47 Aligned_cols=82 Identities=12% Similarity=0.022 Sum_probs=45.2
Q ss_pred EEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--cc----CCcccccEEEEEeCCCceEEee------e
Q psy7938 195 VEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EH----TKITSFPTLKLYAKDDNRVIDY------N 262 (305)
Q Consensus 195 v~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~----~~i~~~Ptl~~f~~g~~~~~~~------~ 262 (305)
..|+.++|+.|++....+++. ++.+..+|...... .+ +...+...--++...+. ..+- .
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~el~~l~~~~~~~~~~lin~~~~-~~k~l~~~~~~ 72 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN--------GIEYQFIDIGEDGPTREELLDILSLLEDGIDPLLNTRGQ-SYRALNTSNTF 72 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc--------CCceEEEecCCChhhHHHHHHHHHHcCCCHHHheeCCCc-chhhCCchhhc
Confidence 468999999999988777763 34445556554432 11 11122222224444333 1211 1
Q ss_pred CCCCHHHHHHHHHhcCCCCCCCC
Q psy7938 263 GERVLEALSNFVESGGKEGGLPS 285 (305)
Q Consensus 263 g~~~~~~l~~fi~~~~~~~~~~~ 285 (305)
...+.+++.++|.++...-..|-
T Consensus 73 ~~ls~~e~~~~i~~~p~LikRPI 95 (117)
T TIGR01617 73 LDLSDKEALELLAEDPALLRRPL 95 (117)
T ss_pred ccCCHHHHHHHHHhCcceEecCE
Confidence 24567788888888776544443
No 423
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=64.95 E-value=1.5 Score=35.21 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=19.6
Q ss_pred HHHhhhhhcCcccccccccceeeee
Q psy7938 34 RSFVTEFLAGNLKHSKFKKNLYIHL 58 (305)
Q Consensus 34 ~~~iv~f~a~wc~~c~~~~p~~~~~ 58 (305)
...|+.|+...|++|+.+.+.+..+
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~~~ 40 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILEAW 40 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHHHH
Confidence 4457889999999999887666554
No 424
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=64.60 E-value=8.3 Score=28.75 Aligned_cols=83 Identities=13% Similarity=0.177 Sum_probs=45.1
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc------ccCCcccccEEEEEeCCCceEEeee----C
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL------EHTKITSFPTLKLYAKDDNRVIDYN----G 263 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~------~~~~i~~~Ptl~~f~~g~~~~~~~~----g 263 (305)
+..|+.++|+.|++....+++. ++.+-.+|...+.. +-+...+.|.--+++..+.. .+-- .
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~--------gi~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~~-~k~l~~~~~ 72 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH--------QIPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSKA-FKNLNIDID 72 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--------CCceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcHH-HHHcCCCcc
Confidence 4578899999999988777764 23344445544332 11111122433344544431 1111 2
Q ss_pred CCCHHHHHHHHHhcCCCCCCCC
Q psy7938 264 ERVLEALSNFVESGGKEGGLPS 285 (305)
Q Consensus 264 ~~~~~~l~~fi~~~~~~~~~~~ 285 (305)
..+.+++.+.+.++...-..|-
T Consensus 73 ~ls~~e~i~~l~~~p~LikRPi 94 (115)
T cd03032 73 ELSLSELIRLISEHPSLLRRPI 94 (115)
T ss_pred cCCHHHHHHHHHhChhheeCCE
Confidence 3566778888888765444443
No 425
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=63.68 E-value=18 Score=30.52 Aligned_cols=47 Identities=19% Similarity=0.368 Sum_probs=35.7
Q ss_pred HHHHHHcCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHHHHcCccccc
Q psy7938 104 QKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFLAGNLKQH 159 (305)
Q Consensus 104 ~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~~~~~~~~~ 159 (305)
.+.+++.||+ +.|+|++ + .+|... |..+.+.+.+-+.+.++.+..+.
T Consensus 174 ~~~A~e~gI~--gVP~fv~-d-----~~~~V~-Gaq~~~v~~~al~~~~~~~~~~~ 220 (225)
T COG2761 174 EAAAQEMGIR--GVPTFVF-D-----GKYAVS-GAQPYDVLEDALRQLLAEKAEEH 220 (225)
T ss_pred HHHHHHCCCc--cCceEEE-c-----CcEeec-CCCCHHHHHHHHHHHHhcccccC
Confidence 3478999998 9999998 2 344443 78889999999999987654443
No 426
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=61.59 E-value=9 Score=25.37 Aligned_cols=67 Identities=16% Similarity=0.194 Sum_probs=38.5
Q ss_pred EEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc--c-ccCCcccccEEEEEeCCCceEEeeeCCCCHHHHH
Q psy7938 195 VEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE--L-EHTKITSFPTLKLYAKDDNRVIDYNGERVLEALS 271 (305)
Q Consensus 195 v~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~--~-~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~~~~l~ 271 (305)
..|+.++|+.|.+.+-.++..+-.+ ....+|..... . +......+|++. .+| . . ......|.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~~------~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~-~-~-----l~es~aI~ 66 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVSV------EIIDVDPDNPPEDLAELNPYGTVPTLV--DRD-L-V-----LYESRIIM 66 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCcc------EEEEcCCCCCCHHHHhhCCCCCCCEEE--ECC-E-E-----EEcHHHHH
Confidence 4678899999999876665554333 33344433221 1 233455789774 233 2 1 23456777
Q ss_pred HHHHh
Q psy7938 272 NFVES 276 (305)
Q Consensus 272 ~fi~~ 276 (305)
++|.+
T Consensus 67 ~yL~~ 71 (73)
T cd03059 67 EYLDE 71 (73)
T ss_pred HHHHh
Confidence 77765
No 427
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=61.41 E-value=25 Score=29.85 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=30.4
Q ss_pred CcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCc
Q psy7938 191 KHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATV 234 (305)
Q Consensus 191 ~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~ 234 (305)
+..++.|....|++|+...+.+.+....... .++.+..+-...
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~-~~~~~~~~~f~~ 127 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKKYIDDGK-VRLVLREFPFLD 127 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHHhhhcCC-CceEEEEeecCC
Confidence 6789999999999999888888885555433 245555444333
No 428
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=58.84 E-value=3.2 Score=34.59 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=16.9
Q ss_pred hhhhhcCccccccccccee
Q psy7938 37 VTEFLAGNLKHSKFKKNLY 55 (305)
Q Consensus 37 iv~f~a~wc~~c~~~~p~~ 55 (305)
|++|+.-.|+||..+.+.+
T Consensus 41 VvEffdy~CphC~~~~~~l 59 (207)
T PRK10954 41 VLEFFSFYCPHCYQFEEVY 59 (207)
T ss_pred EEEEeCCCCccHHHhcccc
Confidence 8899999999999888765
No 429
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=58.77 E-value=12 Score=28.86 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=17.0
Q ss_pred EEEEECCCChhhhhHHHHHHHH
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKL 215 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~l 215 (305)
+..|+.++|+.|+.....+++-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~ 23 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH 23 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc
Confidence 4578999999999977665543
No 430
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=58.59 E-value=31 Score=25.66 Aligned_cols=45 Identities=13% Similarity=0.239 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEEeCCccccccCCcccccEEEEEeC
Q psy7938 207 QLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKLYAK 253 (305)
Q Consensus 207 ~~~~~~~~la~~~~~~~~v~~~~id~~~~~~~~~~i~~~Ptl~~f~~ 253 (305)
.+.+....+.+........ ..+.++.+..++|+|+.+|++++-+.
T Consensus 36 ~~~~t~~~~~~l~~~~~~~--~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC--PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC--cceeEChhHHhhCCceEcCEEEEEcC
Confidence 4445555555444332222 44555666669999999999999887
No 431
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=58.40 E-value=86 Score=24.37 Aligned_cols=73 Identities=16% Similarity=0.236 Sum_probs=46.1
Q ss_pred cEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcc----cccEEEEEeCCCceEEeeeCCC
Q psy7938 192 HVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKIT----SFPTLKLYAKDDNRVIDYNGER 265 (305)
Q Consensus 192 ~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~----~~Ptl~~f~~g~~~~~~~~g~~ 265 (305)
.-++.|++|.||=|......++.. .+.+-.+..+.-.. ++++|. +=-|.++ +| .-.+|-.
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~~--------Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~G----y~vEGHV 91 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKAN--------GFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NG----YYVEGHV 91 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHhC--------CcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cC----EEEeccC
Confidence 457789999999998876655521 34444444443333 557663 3334443 23 3357888
Q ss_pred CHHHHHHHHHhcC
Q psy7938 266 VLEALSNFVESGG 278 (305)
Q Consensus 266 ~~~~l~~fi~~~~ 278 (305)
..+.+..++++.-
T Consensus 92 Pa~aI~~ll~~~p 104 (149)
T COG3019 92 PAEAIARLLAEKP 104 (149)
T ss_pred CHHHHHHHHhCCC
Confidence 8999999998765
No 432
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=57.10 E-value=15 Score=24.41 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=30.2
Q ss_pred EEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc-----c-ccCCcccccEEEE
Q psy7938 195 VEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE-----L-EHTKITSFPTLKL 250 (305)
Q Consensus 195 v~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~-----~-~~~~i~~~Ptl~~ 250 (305)
..|+.++|+.|++..-.+.+..-. +....+|..... . .......+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~------~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE------LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD 57 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC------CEEEEecCccCCcCCHHHHhhCcCCCCCEEEE
Confidence 468899999999887666665333 344445543221 1 3333557899963
No 433
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=54.16 E-value=36 Score=25.05 Aligned_cols=39 Identities=23% Similarity=0.251 Sum_probs=23.9
Q ss_pred ceEEEEEEeCCc--hhHHHHHHHcCCCCCCCCeEEEEecCcC
Q psy7938 89 LKVLFVTINTDE--EDHQKILEFFGMSKDEVPSLRLIRLEED 128 (305)
Q Consensus 89 ~~v~~~~vd~~~--~~~~~l~~~~~I~~~~~Ptl~~~~~~~~ 128 (305)
+.+.++.+|.-. +-...++++|||. =.-|.++++++|.-
T Consensus 50 ~~~~~y~l~v~~~R~vSn~IAe~~~V~-HeSPQ~ili~~g~~ 90 (105)
T PF11009_consen 50 DEIPVYYLDVIEYRPVSNAIAEDFGVK-HESPQVILIKNGKV 90 (105)
T ss_dssp ----EEEEEGGGGHHHHHHHHHHHT-----SSEEEEEETTEE
T ss_pred ccceEEEEEEEeCchhHHHHHHHhCCC-cCCCcEEEEECCEE
Confidence 348899999872 1223589999996 35699999998864
No 434
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=53.76 E-value=56 Score=22.23 Aligned_cols=60 Identities=20% Similarity=0.166 Sum_probs=44.7
Q ss_pred EEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEEEeC
Q psy7938 193 VLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLYAK 253 (305)
Q Consensus 193 ~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f~~ 253 (305)
.+..|-+..-+........+.++-+.+. .+.+.+--||..+++- +.++|-.+||++=.-.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l-~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~~P 64 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELL-GGPYELEVIDVLKQPQLAEEDKIVATPTLVKVLP 64 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhc-CCcEEEEEEEcccCHhHHhhCCEEEechhhhcCC
Confidence 4556666666777777777777777765 4678888889888876 8899999999774433
No 435
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=53.24 E-value=17 Score=27.02 Aligned_cols=22 Identities=9% Similarity=0.339 Sum_probs=17.5
Q ss_pred EEEEECCCChhhhhHHHHHHHH
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKL 215 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~l 215 (305)
+..|+.+.|+.|++....+++-
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~ 23 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA 23 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc
Confidence 4578999999999887666654
No 436
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=53.20 E-value=38 Score=27.97 Aligned_cols=46 Identities=24% Similarity=0.254 Sum_probs=32.1
Q ss_pred hHHHHHHHcCCCCCCCCeEEEEecCcCceeccCCCC--CCCHHHHHHHHHHHH
Q psy7938 102 DHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATP--EISVDTVRSFVTEFL 152 (305)
Q Consensus 102 ~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~--~~~~~~l~~fv~~~~ 152 (305)
+...++++.|+. ++||+.+-++|+ -+....| -.+.+.+..++.+.+
T Consensus 162 ~~r~l~~rlg~~--GfPTl~le~ng~---~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 162 DSRRLMQRLGAA--GFPTLALERNGT---MYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHHHhccC--CCCeeeeeeCCc---eEeccCCcccCCcHHHHHHHHHHH
Confidence 336789999998 999999999763 2222223 346677888777764
No 437
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=50.60 E-value=83 Score=22.70 Aligned_cols=60 Identities=20% Similarity=0.345 Sum_probs=35.9
Q ss_pred HHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCCCCCCCeEEEEecC------cC-ceeccCCCCCCCHHHHHHHHHHH
Q psy7938 80 FVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLE------ED-MAKYKPATPEISVDTVRSFVTEF 151 (305)
Q Consensus 80 ~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~------~~-~~~~~~~~~~~~~~~l~~fv~~~ 151 (305)
+...+...+....|+.... ..++..+++ .|++++|++. +. ...| .|..+.++|.+|+...
T Consensus 37 F~~vA~~~R~d~~F~~~~~-----~~~~~~~~~----~~~ivl~~p~~~~~k~de~~~~y---~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 37 FLKAADTLRESFRFAHTSD-----KQLLEKYGY----GEGVVLFRPPRLSNKFEDSSVKF---DGDLDSSKIKKFIREN 103 (104)
T ss_pred HHHHHHhhhhcCEEEEECh-----HHHHHhcCC----CCceEEEechhhhcccCcccccc---cCcCCHHHHHHHHHhh
Confidence 3333444445677765443 345677776 3678888541 11 1234 3667889999999764
No 438
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=49.85 E-value=35 Score=26.46 Aligned_cols=37 Identities=5% Similarity=0.286 Sum_probs=26.5
Q ss_pred HHHHHHcCCCCCCCCeEEEEecCcCceeccCCCCCCCHHHHHHHHHH
Q psy7938 104 QKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTE 150 (305)
Q Consensus 104 ~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~ 150 (305)
.+++.+.||. +.||+++ +| ..+ .+..+.+++.++|++
T Consensus 126 ~~~~~~~~i~--~tPt~~i--nG---~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 126 SQLARQLGIT--GTPTFFI--NG---KYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp HHHHHHHT-S--SSSEEEE--TT---CEE---ETTTSHHHHHHHHHH
T ss_pred HHHHHHcCCc--cccEEEE--CC---EEe---CCCCCHHHHHHHHcC
Confidence 3578899998 9999997 34 233 257888899888763
No 439
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=48.77 E-value=11 Score=29.13 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=31.6
Q ss_pred EEEEEEeCCchhHHHHHHHcCCCCCCCC---eEEEEecCcCceeccCCCCCCCHHHHHHHHHHH
Q psy7938 91 VLFVTINTDEEDHQKILEFFGMSKDEVP---SLRLIRLEEDMAKYKPATPEISVDTVRSFVTEF 151 (305)
Q Consensus 91 v~~~~vd~~~~~~~~l~~~~~I~~~~~P---tl~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~ 151 (305)
+.+-.+..+ +...+-+++||.. ..- |.+ ++ .+|. .|....+++..++.+-
T Consensus 51 f~Vk~~~~~--d~~alK~~~gIp~-e~~SCHT~V-I~-----Gy~v--EGHVPa~aI~~ll~~~ 103 (149)
T COG3019 51 FEVKVVETD--DFLALKRRLGIPY-EMQSCHTAV-IN-----GYYV--EGHVPAEAIARLLAEK 103 (149)
T ss_pred cEEEEeecC--cHHHHHHhcCCCh-hhccccEEE-Ec-----CEEE--eccCCHHHHHHHHhCC
Confidence 555556666 7788889999962 222 222 11 2332 3777888899888765
No 440
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=48.68 E-value=22 Score=26.76 Aligned_cols=26 Identities=15% Similarity=0.520 Sum_probs=20.6
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHh
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKLGEKF 219 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~la~~~ 219 (305)
+..|+.|.|+.|+.....+++..-.+
T Consensus 3 itiy~~p~C~t~rka~~~L~~~gi~~ 28 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHGIEY 28 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCc
Confidence 56799999999999988877754443
No 441
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=48.33 E-value=9.8 Score=29.12 Aligned_cols=91 Identities=10% Similarity=0.101 Sum_probs=55.2
Q ss_pred HHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCC
Q psy7938 34 RSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMS 113 (305)
Q Consensus 34 ~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~ 113 (305)
+-+++.|--+|=+.|.++.-++...++.+ ++-..++.||.+ +-+++.+.|.+.
T Consensus 21 rvvViRFG~d~d~~Cm~mDeiL~~~a~~v-------------------------~~~a~IY~vDi~--~Vpdfn~~yel~ 73 (133)
T PF02966_consen 21 RVVVIRFGRDWDPVCMQMDEILYKIAEKV-------------------------KNFAVIYLVDID--EVPDFNQMYELY 73 (133)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHH-------------------------TTTEEEEEEETT--TTHCCHHHTTS-
T ss_pred eEEEEEeCCCCCccHHHHHHHHHHHHHHh-------------------------hcceEEEEEEcc--cchhhhcccccC
Confidence 33455688888888876654554443333 355778999999 889999999994
Q ss_pred CCCCC-eEEEEecCcCc-------eeccCCCCCCCHHHHHHHHHHHHcC
Q psy7938 114 KDEVP-SLRLIRLEEDM-------AKYKPATPEISVDTVRSFVTEFLAG 154 (305)
Q Consensus 114 ~~~~P-tl~~~~~~~~~-------~~~~~~~~~~~~~~l~~fv~~~~~~ 154 (305)
-| |+++|-.+... ...+....-.+.+++.+.++-...|
T Consensus 74 ---dP~tvmFF~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~iyrg 119 (133)
T PF02966_consen 74 ---DPCTVMFFFRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIETIYRG 119 (133)
T ss_dssp ---SSEEEEEEETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHHHHHH
T ss_pred ---CCeEEEEEecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHHHHHH
Confidence 56 56666333221 1111111123578888888876654
No 442
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=48.28 E-value=27 Score=28.09 Aligned_cols=37 Identities=22% Similarity=0.398 Sum_probs=29.5
Q ss_pred EEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEE
Q psy7938 193 VLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKI 230 (305)
Q Consensus 193 ~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~i 230 (305)
.+.+|+...|++|-...+.+.++...+.+ -.+.+.-+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~-~~i~~~p~ 37 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPD-VEIEWRPF 37 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTT-CEEEEEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CcEEEecc
Confidence 36789999999999999999999999832 34555444
No 443
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=47.95 E-value=21 Score=24.26 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=31.4
Q ss_pred hhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCCCCCCCeEEEE
Q psy7938 77 VRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLI 123 (305)
Q Consensus 77 ~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~~~~~Ptl~~~ 123 (305)
++.+..+.. .+.+.+--||.. +++++|+.++|- ..||++=.
T Consensus 22 l~~i~e~~l--~~~~~LeVIDv~--~~P~lAe~~~iv--AtPtLvk~ 62 (72)
T cd02978 22 LKRILEELL--GGPYELEVIDVL--KQPQLAEEDKIV--ATPTLVKV 62 (72)
T ss_pred HHHHHHHhc--CCcEEEEEEEcc--cCHhHHhhCCEE--Eechhhhc
Confidence 333444443 578888889999 999999999998 99998733
No 444
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=47.71 E-value=32 Score=27.72 Aligned_cols=32 Identities=16% Similarity=0.339 Sum_probs=26.4
Q ss_pred ccCCcccccEEEEEeCCCceEEeeeCCCCHHHHHHHH
Q psy7938 238 EHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFV 274 (305)
Q Consensus 238 ~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~~~~l~~fi 274 (305)
..++|.++|++++ +| + ..+.|....+.|.+.|
T Consensus 161 ~~~gv~GvP~~vv--~g-~--~~~~G~~~~~~l~~~l 192 (193)
T PF01323_consen 161 RQLGVFGVPTFVV--NG-K--YRFFGADRLDELEDAL 192 (193)
T ss_dssp HHTTCSSSSEEEE--TT-T--EEEESCSSHHHHHHHH
T ss_pred HHcCCcccCEEEE--CC-E--EEEECCCCHHHHHHHh
Confidence 6789999999999 44 3 6788998888888766
No 445
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=47.30 E-value=31 Score=27.80 Aligned_cols=27 Identities=37% Similarity=0.869 Sum_probs=24.7
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhC
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKLGEKFA 220 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~la~~~~ 220 (305)
+.+|+.+.|++|-...+.+.++...+.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 568999999999999999999999984
No 446
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=45.83 E-value=32 Score=24.04 Aligned_cols=52 Identities=10% Similarity=0.217 Sum_probs=31.3
Q ss_pred EEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc--c-ccCCcccccEEEE
Q psy7938 193 VLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE--L-EHTKITSFPTLKL 250 (305)
Q Consensus 193 ~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~--~-~~~~i~~~Ptl~~ 250 (305)
.+..|+.+.|++|.+.+-.+....- .+.+..++..... . .......+|++..
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl------~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNI------PHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCC------CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 3566788899999988765555432 3444455543221 2 2334567899875
No 447
>KOG3170|consensus
Probab=45.68 E-value=6.6 Score=32.34 Aligned_cols=87 Identities=10% Similarity=0.158 Sum_probs=54.0
Q ss_pred HHHHHhh-hhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHHHHHHc
Q psy7938 32 TVRSFVT-EFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFF 110 (305)
Q Consensus 32 ~~~~~iv-~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~ 110 (305)
+--.|++ .-|....+.|..++..+..++..+ ..+.|+++-.+.+ ...|
T Consensus 109 s~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kf--------------------------p~iKFVki~at~c-----IpNY 157 (240)
T KOG3170|consen 109 SEGVWVVVHLYKQGVPLCALLSHHLQSLACKF--------------------------PQIKFVKIPATTC-----IPNY 157 (240)
T ss_pred cCccEEEEEeeccccHHHHHHHHHHHHHhhcC--------------------------CcceEEecccccc-----cCCC
Confidence 3334443 468888888987766666663333 4588888865511 0112
Q ss_pred CCCCCCCCeEEEEecCcCceeccC--C--CCCCCHHHHHHHHHHH
Q psy7938 111 GMSKDEVPSLRLIRLEEDMAKYKP--A--TPEISVDTVRSFVTEF 151 (305)
Q Consensus 111 ~I~~~~~Ptl~~~~~~~~~~~~~~--~--~~~~~~~~l~~fv~~~ 151 (305)
-= ...||+++|..|.-...+.+ . +...+.+++..++.+.
T Consensus 158 Pe--~nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 158 PE--SNLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred cc--cCCCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 22 37899999998875445542 1 1246788888888765
No 448
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=45.55 E-value=41 Score=28.53 Aligned_cols=49 Identities=16% Similarity=0.248 Sum_probs=39.3
Q ss_pred hcCCCcEEEEEECCCChhhhhHHHHHHHHHHHhCC--CCceEEEEEeCCcc
Q psy7938 187 FDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFAD--RDDITIAKIDATVN 235 (305)
Q Consensus 187 ~~~~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~--~~~v~~~~id~~~~ 235 (305)
...+..++|-+-..+|..|..-...++.|-.++.+ ..+|.|+-||--..
T Consensus 23 ~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~ 73 (238)
T PF04592_consen 23 NSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGE 73 (238)
T ss_pred hcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCc
Confidence 34567889999999999999988999998888754 35899998885543
No 449
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=45.09 E-value=2e+02 Score=26.43 Aligned_cols=138 Identities=18% Similarity=0.273 Sum_probs=80.2
Q ss_pred CCCeEEEEecCcC-ceeccCCCCCCCHHHHHHHHHHHHcCcccccccCCCCCCccccCCcEEecccChhHHHhc-CCCcE
Q psy7938 116 EVPSLRLIRLEED-MAKYKPATPEISVDTVRSFVTEFLAGNLKQHLLSQPLPEDWDKNAVKVLVASNFDEIAFD-KSKHV 193 (305)
Q Consensus 116 ~~Ptl~~~~~~~~-~~~~~~~~~~~~~~~l~~fv~~~~~~~~~~~~~s~~~p~~~~~~~v~~l~~~~f~~~v~~-~~~~~ 193 (305)
.-|+|.+=+.|+. ..+|. |--.--++.+++.-.+.-.-. .|.. +.+.-+.+.+ .+..-
T Consensus 60 RkpSF~i~r~g~~~gv~FA---glPlGHEftSlVLaLlqv~G~-------ppk~----------~q~vieqik~i~g~~~ 119 (520)
T COG3634 60 RKPSFSINRPGEDQGVRFA---GLPLGHEFTSLVLALLQVGGH-------PPKE----------DQDVIEQIKAIDGDFH 119 (520)
T ss_pred cCCceeecCCCcccceEEe---cCcccchHHHHHHHHHHhcCC-------CCch----------hHHHHHHHHhcCCcee
Confidence 4588888887754 23453 222223466666655432111 1111 1122222222 23445
Q ss_pred EEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCc--cccccCCcccccEEEEEeCCCceEEeeeCCCCHHHHH
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATV--NELEHTKITSFPTLKLYAKDDNRVIDYNGERVLEALS 271 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~--~~~~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~~~~l~ 271 (305)
|=-|++-.|..|-.+-..+.-++-. ++++....||..- ++.+.-+|-++||+++ +|+. .-.|.++.++|.
T Consensus 120 FETy~SltC~nCPDVVQALN~msvl---Np~I~H~~IdGa~Fq~Evear~IMaVPtvfl--nGe~---fg~GRmtleeil 191 (520)
T COG3634 120 FETYFSLTCHNCPDVVQALNLMSVL---NPRIKHTAIDGALFQDEVEARNIMAVPTVFL--NGEE---FGQGRMTLEEIL 191 (520)
T ss_pred EEEEEEeeccCChHHHHHHHHHHhc---CCCceeEEecchhhHhHHHhccceecceEEE--cchh---hcccceeHHHHH
Confidence 6667888899998877766655443 3578888888654 3336668899999987 4432 236778888888
Q ss_pred HHHHhcCCCC
Q psy7938 272 NFVESGGKEG 281 (305)
Q Consensus 272 ~fi~~~~~~~ 281 (305)
.-|...+...
T Consensus 192 aki~~gaa~~ 201 (520)
T COG3634 192 AKIDTGAAKR 201 (520)
T ss_pred HHhcCCcccc
Confidence 8777644333
No 450
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=44.92 E-value=19 Score=26.70 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=28.6
Q ss_pred hhcCceEEEEEEeCCchhHHHHHHHcCCCCCCCCeEEEEec
Q psy7938 85 LAGNLKVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRL 125 (305)
Q Consensus 85 ~~~~~~v~~~~vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~~ 125 (305)
-..+..+.+..|+-..+- ..+....|=..++.|.+++=..
T Consensus 38 P~l~~~ldV~rV~f~RPR-~~vi~llGE~~QslPvLVL~~~ 77 (112)
T PF11287_consen 38 PDLRERLDVRRVDFPRPR-QAVIALLGEANQSLPVLVLADG 77 (112)
T ss_pred hhhhhcccEEEeCCCCch-HHHHHHhChhccCCCEEEeCCC
Confidence 444567889999988653 5566777775679998887653
No 451
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=44.26 E-value=1.1e+02 Score=22.66 Aligned_cols=69 Identities=13% Similarity=0.247 Sum_probs=45.9
Q ss_pred HHHHhhcCceEEEEEEeCCchhHHHHH----HHcCCCCCCCCeEEEEecCcCce-eccCC-C-CCCCHHHHHHHHHHHH
Q psy7938 81 VTEFLAGNLKVLFVTINTDEEDHQKIL----EFFGMSKDEVPSLRLIRLEEDMA-KYKPA-T-PEISVDTVRSFVTEFL 152 (305)
Q Consensus 81 ~~~~~~~~~~v~~~~vd~~~~~~~~l~----~~~~I~~~~~Ptl~~~~~~~~~~-~~~~~-~-~~~~~~~l~~fv~~~~ 152 (305)
+++.....+++.|+.||-| +++-+. ..|||+-. -|.+-+.+....-. =+... . ...+.++|.+|+++++
T Consensus 45 vA~~nt~np~LsiIWIDPD--~FPllv~yWektF~IDl~-~PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 45 VARDNTDNPDLSIIWIDPD--DFPLLVPYWEKTFGIDLF-RPQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred HHHhcCcCCCceEEEECCc--cCchhhHHHHhhcCcccC-CCceeeEecccccceeEecccccccCcHHHHHHHHHhhC
Confidence 3344444678999999999 766544 56788743 59999998764312 22222 1 2367899999998863
No 452
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=44.23 E-value=63 Score=25.98 Aligned_cols=45 Identities=24% Similarity=0.384 Sum_probs=30.3
Q ss_pred CCCcEEEEEECCCC-hhhhhHHHHHHHHHHHhCCC-CceEEEEEeCC
Q psy7938 189 KSKHVLVEFYAPWC-GHCKQLAPIYDKLGEKFADR-DDITIAKIDAT 233 (305)
Q Consensus 189 ~~~~~lv~f~~~~C-~~C~~~~~~~~~la~~~~~~-~~v~~~~id~~ 233 (305)
.++.++|.|.-..| ..|-.....+.++.+.+... .++.++.|..+
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 47898999988888 56888888888887777532 34444444444
No 453
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=42.79 E-value=41 Score=25.56 Aligned_cols=70 Identities=9% Similarity=0.169 Sum_probs=39.6
Q ss_pred HHHHHHHHHHH---hCCCCceEEEEEeCCcccc------------ccCCcccccEEEEEeCCCceEEeeeCCCCHHHHHH
Q psy7938 208 LAPIYDKLGEK---FADRDDITIAKIDATVNEL------------EHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSN 272 (305)
Q Consensus 208 ~~~~~~~la~~---~~~~~~v~~~~id~~~~~~------------~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~~~~l~~ 272 (305)
..+.+-.++.. ++ +..+.+.+.|...++. ..-|...+|-+++ +| + ++......+.++|.+
T Consensus 22 vd~eL~~~a~~~~~Lk-~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dG-e-iv~~G~YPt~eEl~~ 96 (123)
T PF06953_consen 22 VDPELVRFAADLDWLK-EQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DG-E-IVKTGRYPTNEELAE 96 (123)
T ss_dssp --HHHHHHHHHHHHHH-HTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TT-E-EEEESS---HHHHHH
T ss_pred CCHHHHHHHHHHHHHH-hCCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CC-E-EEEecCCCCHHHHHH
Confidence 34455444443 33 2479999999888762 4457889999988 44 3 565666889999999
Q ss_pred HHHhcCCCCC
Q psy7938 273 FVESGGKEGG 282 (305)
Q Consensus 273 fi~~~~~~~~ 282 (305)
|+.-......
T Consensus 97 ~~~i~~~~~~ 106 (123)
T PF06953_consen 97 WLGISFSELE 106 (123)
T ss_dssp HHT--GGGTT
T ss_pred HhCCCccccc
Confidence 9976544333
No 454
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=39.57 E-value=1.3e+02 Score=21.88 Aligned_cols=64 Identities=14% Similarity=0.144 Sum_probs=36.7
Q ss_pred hhHHHHHhhcCceEEEEEEeCCchhHHHHHHHcCCCCCCCCeEEEEecCcCceec-----cCCCCC-CCHHH-HHHHHHH
Q psy7938 78 RSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKY-----KPATPE-ISVDT-VRSFVTE 150 (305)
Q Consensus 78 ~~~~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~-----~~~~~~-~~~~~-l~~fv~~ 150 (305)
..+...+...+..+.|+.... ..+...+++. .|.+++|++..--.+| .+ .+. .+.++ |.+|+..
T Consensus 36 ~~F~~vA~~~Rdd~~F~~t~~-----~~~~~~~~~~---~~~vvl~rp~~~~~k~e~~~~~~-~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 36 QLYQDAANSLREDYKFHHTFD-----SEIFKSLKVS---PGQLVVFQPEKFQSKYEPKSHVL-NKKDSTSEDELKDFFKE 106 (107)
T ss_pred HHHHHHHHhcccCCEEEEECh-----HHHHHhcCCC---CCceEEECcHHHhhhcCcceeee-eccccchHHHHHHHHhc
Confidence 344444555556778865543 3567788884 6888888653211122 11 233 45544 9999864
No 455
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=38.96 E-value=8.4 Score=37.70 Aligned_cols=78 Identities=3% Similarity=0.047 Sum_probs=44.4
Q ss_pred CCCChhHHHHHhhhhhcCcccccccccceeeeecccccccCCCCCcchhhhhhhHHHHHhhcCceEEEEEEeCCchhHHH
Q psy7938 26 PEINVDTVRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQK 105 (305)
Q Consensus 26 ~~~~~~~~~~~iv~f~a~wc~~c~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~ 105 (305)
|+......+++++.--+.||..|+-|+. +. ++.+.+..++. ....-++||-+ +.++
T Consensus 36 f~~A~~edkPIflSIGys~CHWChVM~~---ES-------------f~d~eiA~~lN------~~FV~IKVDRE--ERPD 91 (667)
T COG1331 36 FAKAKEEDKPILLSIGYSTCHWCHVMAH---ES-------------FEDPEIAAILN------ENFVPVKVDRE--ERPD 91 (667)
T ss_pred HHHHHHhCCCEEEEeccccccchHHHhh---hc-------------CCCHHHHHHHH------hCceeeeEChh--hccC
Confidence 3344456777888888889999976631 11 11112222222 23445677766 6666
Q ss_pred HHHHc-------CCCCCCCCeEEEEecCcC
Q psy7938 106 ILEFF-------GMSKDEVPSLRLIRLEED 128 (305)
Q Consensus 106 l~~~~-------~I~~~~~Ptl~~~~~~~~ 128 (305)
+-+.| ... .|.|.-+|..+..+
T Consensus 92 vD~~Ym~~~q~~tG~-GGWPLtVfLTPd~k 120 (667)
T COG1331 92 VDSLYMNASQAITGQ-GGWPLTVFLTPDGK 120 (667)
T ss_pred HHHHHHHHHHHhccC-CCCceeEEECCCCc
Confidence 54444 443 49997777776544
No 456
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=38.84 E-value=32 Score=25.45 Aligned_cols=80 Identities=10% Similarity=0.069 Sum_probs=43.4
Q ss_pred EEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc---------ccCCcccccEEEEEeCCCceEEee----
Q psy7938 195 VEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL---------EHTKITSFPTLKLYAKDDNRVIDY---- 261 (305)
Q Consensus 195 v~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~---------~~~~i~~~Ptl~~f~~g~~~~~~~---- 261 (305)
..|+.+.|..|++....+++. ++.+..+|..+... ...+ .+.--+++..+.. .+-
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~--------~i~~~~~di~~~~~t~~el~~~l~~~~---~~~~~lin~~~~~-y~~l~~~ 69 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA--------GIEPEIVEYLKTPPTAAELRELLAKLG---ISPRDLLRTKEAP-YKELGLA 69 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC--------CCCeEEEecccCCcCHHHHHHHHHHcC---CCHHHHHhcCCch-HHHcCCC
Confidence 578999999999987666554 23334455544432 2222 1122233332221 110
Q ss_pred eCCCCHHHHHHHHHhcCCCCCCCCC
Q psy7938 262 NGERVLEALSNFVESGGKEGGLPSG 286 (305)
Q Consensus 262 ~g~~~~~~l~~fi~~~~~~~~~~~~ 286 (305)
....+.+++.+.|.++...-..|-.
T Consensus 70 ~~~ls~~e~i~ll~~~P~LikRPIi 94 (112)
T cd03034 70 DPELSDEELIDAMAAHPILIERPIV 94 (112)
T ss_pred ccCCCHHHHHHHHHhCcCcccCCEE
Confidence 1246678888888888765555544
No 457
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=37.58 E-value=34 Score=25.41 Aligned_cols=79 Identities=8% Similarity=0.042 Sum_probs=43.5
Q ss_pred EEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc---------ccCCcccccE-EEEEeCCCceEEeee--
Q psy7938 195 VEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL---------EHTKITSFPT-LKLYAKDDNRVIDYN-- 262 (305)
Q Consensus 195 v~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~---------~~~~i~~~Pt-l~~f~~g~~~~~~~~-- 262 (305)
..|+.+.|..|++....+++. ++.+..+|..+.+. +..+ .+. --+++..+. ..+--
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~--------~i~~~~~di~~~p~t~~el~~~l~~~g---~~~~~~lin~~~~-~~~~l~~ 69 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK--------GIEPEVVKYLKNPPTKSELEAIFAKLG---LTVAREMIRTKEA-LYKELGL 69 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC--------CCCeEEEeccCCCcCHHHHHHHHHHcC---CchHHHHHhcCCc-HHHHcCC
Confidence 478999999999987776664 23334455544442 2223 222 113443322 11111
Q ss_pred --CCCCHHHHHHHHHhcCCCCCCCC
Q psy7938 263 --GERVLEALSNFVESGGKEGGLPS 285 (305)
Q Consensus 263 --g~~~~~~l~~fi~~~~~~~~~~~ 285 (305)
...+.+++.+.|.++...-..|-
T Consensus 70 ~~~~ls~~e~i~~l~~~P~LikRPI 94 (114)
T TIGR00014 70 SDPNLSDQELLDAMVAHPILLERPI 94 (114)
T ss_pred CccCCCHHHHHHHHHHCcCcccCCe
Confidence 14566778888888766544443
No 458
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=37.37 E-value=1.9e+02 Score=22.31 Aligned_cols=85 Identities=12% Similarity=0.119 Sum_probs=55.4
Q ss_pred CCCcEEEEEECCCCh----hhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc--------------------cccCCccc
Q psy7938 189 KSKHVLVEFYAPWCG----HCKQLAPIYDKLGEKFADRDDITIAKIDATVNE--------------------LEHTKITS 244 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~----~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~--------------------~~~~~i~~ 244 (305)
..|.++|+.+++.-. .|+...- =+.+.+-++ .++++-.-|....+ ...++.+.
T Consensus 20 e~K~L~VYLH~~~~~~t~~Fc~~~L~-se~Vi~fl~--~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~ 96 (136)
T cd02990 20 DRKLLAIYLHHDESVLSNVFCSQLLC-AESIVQYLS--QNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQ 96 (136)
T ss_pred hcceEEEEEcCCCCccHHHHHHHHhc-CHHHHHHHH--cCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCC
Confidence 467889998888653 4444310 023333343 36777667766643 14567899
Q ss_pred ccEEEEEeCCCc---eEEeeeCCCCHHHHHHHHHh
Q psy7938 245 FPTLKLYAKDDN---RVIDYNGERVLEALSNFVES 276 (305)
Q Consensus 245 ~Ptl~~f~~g~~---~~~~~~g~~~~~~l~~fi~~ 276 (305)
+|.+.+.-.... ...+..|..+.+++..-|..
T Consensus 97 fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~ 131 (136)
T cd02990 97 LPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIE 131 (136)
T ss_pred CCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHH
Confidence 999999865432 26678999999999887664
No 459
>KOG2792|consensus
Probab=36.54 E-value=2.4e+02 Score=24.54 Aligned_cols=88 Identities=13% Similarity=0.226 Sum_probs=52.9
Q ss_pred CCcEEEEEECCCChh-hhhHHHHHHHHHHHhCCCCce----EEEEEeCCccc----------------------------
Q psy7938 190 SKHVLVEFYAPWCGH-CKQLAPIYDKLGEKFADRDDI----TIAKIDATVNE---------------------------- 236 (305)
Q Consensus 190 ~~~~lv~f~~~~C~~-C~~~~~~~~~la~~~~~~~~v----~~~~id~~~~~---------------------------- 236 (305)
++=++++|.=+.|+. |-.....+.++.+.+.....+ .|+.+|-....
T Consensus 139 Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~v 218 (280)
T KOG2792|consen 139 GKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQV 218 (280)
T ss_pred cceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHHH
Confidence 567888998888874 766555555555655443332 67777764433
Q ss_pred cccCCc---------------ccccEEEEEeCCCceEEeeeC-CCCHHHHHHHHHhcC
Q psy7938 237 LEHTKI---------------TSFPTLKLYAKDDNRVIDYNG-ERVLEALSNFVESGG 278 (305)
Q Consensus 237 ~~~~~i---------------~~~Ptl~~f~~g~~~~~~~~g-~~~~~~l~~fi~~~~ 278 (305)
+++|.| ++.=-++++++.+. .+.|-| ..+.+++.+=|.++.
T Consensus 219 ak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~-Fvd~~GrN~~~~~~~~~I~~~v 275 (280)
T KOG2792|consen 219 AKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGE-FVDYYGRNYDADELADSILKHV 275 (280)
T ss_pred HHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcc-eehhhcccCCHHHHHHHHHHHH
Confidence 122222 22222344455555 777777 778888888777654
No 460
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=36.01 E-value=1.3e+02 Score=25.08 Aligned_cols=48 Identities=23% Similarity=0.324 Sum_probs=33.3
Q ss_pred CCCcEEEEEECCCCh-hhhhHHHHHHHHHHHhC-CC-C--ceEEEEEeCCccc
Q psy7938 189 KSKHVLVEFYAPWCG-HCKQLAPIYDKLGEKFA-DR-D--DITIAKIDATVNE 236 (305)
Q Consensus 189 ~~~~~lv~f~~~~C~-~C~~~~~~~~~la~~~~-~~-~--~v~~~~id~~~~~ 236 (305)
.+++++|.|.=+.|+ -|-.....+.++-+.+. .. . .++++.+|-+...
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDt 118 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDT 118 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCC
Confidence 578899988877785 48888877877777775 22 2 4667777755433
No 461
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=35.13 E-value=42 Score=23.79 Aligned_cols=34 Identities=15% Similarity=0.043 Sum_probs=28.2
Q ss_pred CceEEEEEEeCCchhHHHHHHHcCCCCCCCCeEEEEec
Q psy7938 88 NLKVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRL 125 (305)
Q Consensus 88 ~~~v~~~~vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~~ 125 (305)
.|.+.+--||.. +++++|+.++|- ..||++=.-+
T Consensus 33 ~g~y~LeVIDv~--~qP~lAE~~~Iv--ATPtLIK~~P 66 (87)
T TIGR02654 33 QGVYALKVIDVL--KNPQLAEEDKIL--ATPTLSKILP 66 (87)
T ss_pred CCceEEEEEEcc--cCHhHHhHCCEE--EecHHhhcCC
Confidence 466888888999 999999999998 9999874443
No 462
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.54 E-value=17 Score=26.47 Aligned_cols=35 Identities=14% Similarity=0.062 Sum_probs=20.8
Q ss_pred ceEEEEEEeCCchhHHHHHHHcCCCCCCCCeE-EEEecC
Q psy7938 89 LKVLFVTINTDEEDHQKILEFFGMSKDEVPSL-RLIRLE 126 (305)
Q Consensus 89 ~~v~~~~vd~~~~~~~~l~~~~~I~~~~~Ptl-~~~~~~ 126 (305)
|.+.|..||.- .+.++-+.+.-- ...||+ .+|-+|
T Consensus 44 g~v~~~~vnVL--~d~eiR~~lk~~-s~WPT~PQLyi~G 79 (105)
T COG0278 44 GVVDFAYVDVL--QDPEIRQGLKEY-SNWPTFPQLYVNG 79 (105)
T ss_pred CCcceeEEeec--cCHHHHhccHhh-cCCCCCceeeECC
Confidence 44788999987 555554433321 467777 445544
No 463
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=33.08 E-value=19 Score=28.31 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=16.1
Q ss_pred EEEEEEeCCc--hhHHHHHHHcCC--CCCCCCeEE
Q psy7938 91 VLFVTINTDE--EDHQKILEFFGM--SKDEVPSLR 121 (305)
Q Consensus 91 v~~~~vd~~~--~~~~~l~~~~~I--~~~~~Ptl~ 121 (305)
|.|-.+|.+. ....+|.+.++- ....+|.+.
T Consensus 31 V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVF 65 (147)
T cd03031 31 VKFDERDVSMDSGFREELRELLGAELKAVSLPRVF 65 (147)
T ss_pred CcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEE
Confidence 6677777752 123345555554 113677654
No 464
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=32.84 E-value=50 Score=26.83 Aligned_cols=33 Identities=12% Similarity=0.234 Sum_probs=0.0
Q ss_pred ccCCcccccEEEEEeCCCceEEeeeCCCCHHHHHHHHH
Q psy7938 238 EHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVE 275 (305)
Q Consensus 238 ~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~~~~l~~fi~ 275 (305)
...+|.++||+++ +++ ....|..+.+.+.+-|+
T Consensus 169 ~~~gv~G~Pt~vv---~g~--~~~~G~~~~~~~~~~i~ 201 (201)
T cd03024 169 RQLGISGVPFFVF---NGK--YAVSGAQPPEVFLQALR 201 (201)
T ss_pred HHCCCCcCCEEEE---CCe--EeecCCCCHHHHHHHhC
No 465
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=32.42 E-value=59 Score=21.13 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=29.2
Q ss_pred EEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc--c----ccCCcccccEEEE
Q psy7938 195 VEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE--L----EHTKITSFPTLKL 250 (305)
Q Consensus 195 v~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~--~----~~~~i~~~Ptl~~ 250 (305)
..|+.+.|+.|.+.+-.+....-. +....+|..... . +......+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~------~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIP------YEWVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC------cEEEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 467889999999887666655332 334445532211 1 2223457899864
No 466
>PRK10853 putative reductase; Provisional
Probab=31.75 E-value=52 Score=24.66 Aligned_cols=22 Identities=9% Similarity=0.096 Sum_probs=17.8
Q ss_pred EEEEECCCChhhhhHHHHHHHH
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKL 215 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~l 215 (305)
+..|+.+.|+.|++....+++-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~ 23 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ 23 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc
Confidence 4578899999999988777654
No 467
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=31.44 E-value=65 Score=24.49 Aligned_cols=23 Identities=9% Similarity=0.228 Sum_probs=18.7
Q ss_pred EEEEEECCCChhhhhHHHHHHHH
Q psy7938 193 VLVEFYAPWCGHCKQLAPIYDKL 215 (305)
Q Consensus 193 ~lv~f~~~~C~~C~~~~~~~~~l 215 (305)
.+..|+.+.|..|++....|++-
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~ 24 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKAS 24 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHC
Confidence 35678999999999988777764
No 468
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=31.35 E-value=47 Score=30.10 Aligned_cols=76 Identities=18% Similarity=0.257 Sum_probs=46.1
Q ss_pred CChhhhhHHHHHHHHHHHhC----C-CCceEEEEEeCCcccc-----ccCCcc-c-ccEEEEEeCCCceEEee-eCCCCH
Q psy7938 201 WCGHCKQLAPIYDKLGEKFA----D-RDDITIAKIDATVNEL-----EHTKIT-S-FPTLKLYAKDDNRVIDY-NGERVL 267 (305)
Q Consensus 201 ~C~~C~~~~~~~~~la~~~~----~-~~~v~~~~id~~~~~~-----~~~~i~-~-~Ptl~~f~~g~~~~~~~-~g~~~~ 267 (305)
.||.|-+..-.+.+++++.+ . ...+.++-+-|--|-. ..+++. + --...+|++|+. +... ....-.
T Consensus 270 SCPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~-v~k~~~ee~~v 348 (359)
T PF04551_consen 270 SCPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEV-VKKVIPEEEIV 348 (359)
T ss_dssp E----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEE-EEEE-CSTCHH
T ss_pred eCCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEE-EEecCCHHHHH
Confidence 38888777666666665543 2 2378999999988874 567776 3 334788888754 5555 666667
Q ss_pred HHHHHHHHhc
Q psy7938 268 EALSNFVESG 277 (305)
Q Consensus 268 ~~l~~fi~~~ 277 (305)
+.|.+-|+++
T Consensus 349 d~L~~~I~~~ 358 (359)
T PF04551_consen 349 DELIELIEEH 358 (359)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 7777777664
No 469
>PRK09301 circadian clock protein KaiB; Provisional
Probab=31.22 E-value=52 Score=24.08 Aligned_cols=41 Identities=15% Similarity=0.037 Sum_probs=30.8
Q ss_pred CceEEEEEEeCCchhHHHHHHHcCCCCCCCCeEEEEecCcCceecc
Q psy7938 88 NLKVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYK 133 (305)
Q Consensus 88 ~~~v~~~~vd~~~~~~~~l~~~~~I~~~~~Ptl~~~~~~~~~~~~~ 133 (305)
.+.+.+=-||.. +++++|+.++|- ..||++=.-+.- ..+..
T Consensus 36 ~g~y~LeVIDv~--~qPelAE~~~Iv--ATPTLIK~~P~P-~rrii 76 (103)
T PRK09301 36 KGVYALKVIDVL--KNPQLAEEDKIL--ATPTLAKILPPP-VRKII 76 (103)
T ss_pred CCceEEEEEEcc--cCHhHHhHCCeE--EecHHhhcCCCC-cceee
Confidence 366888888999 999999999998 999987444332 24554
No 470
>KOG2868|consensus
Probab=30.91 E-value=1.3e+02 Score=26.76 Aligned_cols=65 Identities=14% Similarity=0.184 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhCCCCceEEEEEeCCccccccCCcccccEEEEEeCCCce--EEeeeCCCCHHHHHHHHHhc
Q psy7938 208 LAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKLYAKDDNR--VIDYNGERVLEALSNFVESG 277 (305)
Q Consensus 208 ~~~~~~~la~~~~~~~~v~~~~id~~~~~~~~~~i~~~Ptl~~f~~g~~~--~~~~~g~~~~~~l~~fi~~~ 277 (305)
..|..+++.... ..+.+.++|...++..+.+|.| |+++|++.... -+......+.+++..+|.+.
T Consensus 23 ~DP~ik~Ild~a---shva~Y~fd~~~~eWnKtdiEG--tffvY~R~~~p~~gf~i~NR~~~~nf~e~lt~d 89 (335)
T KOG2868|consen 23 IDPYIKSILDVA---SHVALYTFDFGANEWNKTDIEG--TFFVYKRDASPRHGFLIVNRLSPDNFVEPLTKD 89 (335)
T ss_pred hCHHHHHHHhhc---cceeEEEeccccchhhhcccee--EEEEEEccCCCccceEeecCCChhhhhhhcCCC
Confidence 346666666554 5799999999999998888887 68888765332 22333455667777766654
No 471
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=30.72 E-value=69 Score=22.11 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=20.5
Q ss_pred cccEEEEEeCCCce--EEeeeCCCCHHHHHHHHHhcC
Q psy7938 244 SFPTLKLYAKDDNR--VIDYNGERVLEALSNFVESGG 278 (305)
Q Consensus 244 ~~Ptl~~f~~g~~~--~~~~~g~~~~~~l~~fi~~~~ 278 (305)
.-|++++++.+++. .+...+ .+.+.+.+|+.+..
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~-w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEK-WKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SS-SSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEEEccc-CCHHHHHHHHHHhC
Confidence 45999999976654 444444 48889999998764
No 472
>PRK09301 circadian clock protein KaiB; Provisional
Probab=29.37 E-value=1.7e+02 Score=21.45 Aligned_cols=80 Identities=19% Similarity=0.072 Sum_probs=55.2
Q ss_pred CCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEEEeCCCceEEeeeCCC-C
Q psy7938 190 SKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLYAKDDNRVIDYNGER-V 266 (305)
Q Consensus 190 ~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f~~g~~~~~~~~g~~-~ 266 (305)
...++-.|.+..-+..+.....+.++-+.+.. +.+.+--||..+++- +.+.|-.+||++=--+.- .-+.-|.. +
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~-g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~P--~rriiGDlsd 81 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFK-GVYALKVIDVLKNPQLAEEDKILATPTLAKILPPP--VRKIIGDLSD 81 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcC-CceEEEEEEcccCHhHHhHCCeEEecHHhhcCCCC--cceeeccccc
Confidence 35677788888888887777777777666543 357777889888876 889999999977544442 34566744 3
Q ss_pred HHHHHH
Q psy7938 267 LEALSN 272 (305)
Q Consensus 267 ~~~l~~ 272 (305)
.+.+..
T Consensus 82 ~~kVL~ 87 (103)
T PRK09301 82 REKVLI 87 (103)
T ss_pred HHHHHH
Confidence 444433
No 473
>PRK10026 arsenate reductase; Provisional
Probab=29.28 E-value=68 Score=24.99 Aligned_cols=22 Identities=14% Similarity=0.383 Sum_probs=18.4
Q ss_pred EEEEECCCChhhhhHHHHHHHH
Q psy7938 194 LVEFYAPWCGHCKQLAPIYDKL 215 (305)
Q Consensus 194 lv~f~~~~C~~C~~~~~~~~~l 215 (305)
+..|+.+.|+.|++....+++-
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~ 25 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS 25 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 5678999999999988777764
No 474
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=28.94 E-value=1.9e+02 Score=20.51 Aligned_cols=71 Identities=21% Similarity=0.109 Sum_probs=50.2
Q ss_pred cEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--ccCCcccccEEEEEeCCCceEEeeeCCC
Q psy7938 192 HVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLYAKDDNRVIDYNGER 265 (305)
Q Consensus 192 ~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~~~i~~~Ptl~~f~~g~~~~~~~~g~~ 265 (305)
.++=.|.+..-+.++.....+.++-+.... +.+.+--||..+++- +.+.|-.+||++=--+.- .-+.-|..
T Consensus 4 ~~LrLyvag~~p~S~~ai~nl~~i~e~~l~-g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~P--~rriiGdl 76 (87)
T TIGR02654 4 YVLKLYVAGNTPNSVRALKTLKNILETEFQ-GVYALKVIDVLKNPQLAEEDKILATPTLSKILPPP--VRKIIGDL 76 (87)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcC-CceEEEEEEcccCHhHHhHCCEEEecHHhhcCCCC--cceeeccc
Confidence 456677777777777777777777666543 357777889888876 889999999977544442 34456643
No 475
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=25.17 E-value=1.1e+02 Score=27.57 Aligned_cols=78 Identities=14% Similarity=0.220 Sum_probs=50.9
Q ss_pred CChhhhhHHHHHHHHH----HHhCC-CCceEEEEEeCCcccc-----ccCCccc--ccEEEEEeCCCceEEeeeCCCCHH
Q psy7938 201 WCGHCKQLAPIYDKLG----EKFAD-RDDITIAKIDATVNEL-----EHTKITS--FPTLKLYAKDDNRVIDYNGERVLE 268 (305)
Q Consensus 201 ~C~~C~~~~~~~~~la----~~~~~-~~~v~~~~id~~~~~~-----~~~~i~~--~Ptl~~f~~g~~~~~~~~g~~~~~ 268 (305)
-|+.|-+..-.+.+.+ +.+.. ...+.++-+-|--|.. ..+++.+ -|...+|.+|+. ..+..+..-.+
T Consensus 263 aCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~-~~~~~~~~~~e 341 (361)
T COG0821 263 ACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEI-IKKLPEEDIVE 341 (361)
T ss_pred ECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeE-EEecChhhHHH
Confidence 3999976644443333 33322 2346666667766553 5677764 699999999865 67777777777
Q ss_pred HHHHHHHhcCC
Q psy7938 269 ALSNFVESGGK 279 (305)
Q Consensus 269 ~l~~fi~~~~~ 279 (305)
.|...+.+...
T Consensus 342 el~~~i~~~~~ 352 (361)
T COG0821 342 ELEALIEAYAE 352 (361)
T ss_pred HHHHHHHHHHH
Confidence 88877776543
No 476
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=23.84 E-value=72 Score=23.34 Aligned_cols=76 Identities=16% Similarity=0.159 Sum_probs=36.6
Q ss_pred EECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc--cc----CCcccccEEEEEeCCCceEEeee----CCCC
Q psy7938 197 FYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL--EH----TKITSFPTLKLYAKDDNRVIDYN----GERV 266 (305)
Q Consensus 197 f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~--~~----~~i~~~Ptl~~f~~g~~~~~~~~----g~~~ 266 (305)
|+.+.|..|++....+++- ++.+-.+|..+... .+ +...+.+.--+++..+....... ...+
T Consensus 1 Y~~~~C~t~rka~~~L~~~--------gi~~~~~d~~k~p~s~~el~~~l~~~~~~~~~lin~~~~~~k~l~~~~~~~~s 72 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN--------GIEYEFIDYKKEPLSREELRELLSKLGNGPDDLINTRSKTYKELGKLKKDDLS 72 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT--------T--EEEEETTTS---HHHHHHHHHHHTSSGGGGB-TTSHHHHHTTHHHCTTSB
T ss_pred CcCCCCHHHHHHHHHHHHc--------CCCeEeehhhhCCCCHHHHHHHHHHhcccHHHHhcCccchHhhhhhhhhhhhh
Confidence 6789999999988777763 34445567665442 11 11111111122333332111111 2567
Q ss_pred HHHHHHHHHhcCCC
Q psy7938 267 LEALSNFVESGGKE 280 (305)
Q Consensus 267 ~~~l~~fi~~~~~~ 280 (305)
.+++.+.|.++...
T Consensus 73 ~~e~i~~l~~~p~L 86 (110)
T PF03960_consen 73 DEELIELLLENPKL 86 (110)
T ss_dssp HHHHHHHHHHSGGG
T ss_pred hHHHHHHHHhChhh
Confidence 78888888877643
No 477
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=23.65 E-value=73 Score=23.78 Aligned_cols=17 Identities=18% Similarity=0.507 Sum_probs=14.1
Q ss_pred hHHHHHHHcCCCCCCCCeEE
Q psy7938 102 DHQKILEFFGMSKDEVPSLR 121 (305)
Q Consensus 102 ~~~~l~~~~~I~~~~~Ptl~ 121 (305)
...++++.+|| +|||+.
T Consensus 51 nlKe~e~~lgi---SYPTvR 67 (113)
T PF09862_consen 51 NLKEMEKELGI---SYPTVR 67 (113)
T ss_pred CHHHHHHHHCC---CcHHHH
Confidence 34678999999 799985
No 478
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=23.24 E-value=93 Score=24.97 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=18.4
Q ss_pred HHHHHHcCCCCCCCCeEEEEecCc
Q psy7938 104 QKILEFFGMSKDEVPSLRLIRLEE 127 (305)
Q Consensus 104 ~~l~~~~~I~~~~~Ptl~~~~~~~ 127 (305)
.+.+.++||. +.||+++.+.+.
T Consensus 159 ~~~a~~~gv~--g~Ptfvv~~~~~ 180 (193)
T cd03025 159 QKLARELGIN--GFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHcCCC--ccCEEEEEeCCe
Confidence 5578889998 999999998664
No 479
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=22.21 E-value=3e+02 Score=19.62 Aligned_cols=69 Identities=14% Similarity=0.132 Sum_probs=36.3
Q ss_pred cCCC-cEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccccccCCcccccEEEEEeCC-CceEEeeeCCC
Q psy7938 188 DKSK-HVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKLYAKD-DNRVIDYNGER 265 (305)
Q Consensus 188 ~~~~-~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~~~~~i~~~Ptl~~f~~g-~~~~~~~~g~~ 265 (305)
+.++ .++.+|-...-+ -...|+++|..++++=.+.++-=+...+ ..-.+-|.+ +|+++ ......|.|..
T Consensus 14 d~~kr~iIgYF~~~~~~----eY~~f~kvA~~lr~dC~F~v~~G~~~~~----~~~~~~~~i-~frp~~~~~~~~y~G~~ 84 (91)
T cd03070 14 DRSKRNIIGYFESKDSD----EYDNFRKVANILRDDCSFLVGFGDVTKP----ERPPGDNII-YFPPGHNAPDMVYLGSL 84 (91)
T ss_pred CcCCceEEEEEcCCCCh----hHHHHHHHHHHHhhcCeEEEEecccccc----ccCCCCCeE-EECCCCCCCceEEccCC
Confidence 4455 455555443323 2567889999997644444433232211 112333444 44554 44358899966
No 480
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=21.76 E-value=3.7e+02 Score=21.92 Aligned_cols=76 Identities=14% Similarity=0.188 Sum_probs=45.5
Q ss_pred CCcEEEEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc--c-ccCCcccccEEEEEeCCCceEEeeeCCCC
Q psy7938 190 SKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE--L-EHTKITSFPTLKLYAKDDNRVIDYNGERV 266 (305)
Q Consensus 190 ~~~~lv~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~--~-~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~ 266 (305)
+...+.+|+.+.|+.|.+..-.+.+..- .+....+|..... . ...-...+|++.. +| . .+ ..
T Consensus 7 ~~~~~~Ly~~~~s~~~~rv~~~L~e~gl------~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~--~g-~-~l-----~E 71 (211)
T PRK09481 7 KRSVMTLFSGPTDIYSHQVRIVLAEKGV------SVEIEQVEKDNLPQDLIDLNPYQSVPTLVD--RE-L-TL-----YE 71 (211)
T ss_pred CCCeeEEeCCCCChhHHHHHHHHHHCCC------CCEEEeCCcccCCHHHHHhCCCCCCCEEEE--CC-E-Ee-----eC
Confidence 4455667778899999998866665432 3445556643221 1 2223457899863 33 2 22 34
Q ss_pred HHHHHHHHHhcCCC
Q psy7938 267 LEALSNFVESGGKE 280 (305)
Q Consensus 267 ~~~l~~fi~~~~~~ 280 (305)
...|.++|.+....
T Consensus 72 S~AIl~YL~~~~~~ 85 (211)
T PRK09481 72 SRIIMEYLDERFPH 85 (211)
T ss_pred HHHHHHHHHHhCCC
Confidence 56788899877643
No 481
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=21.70 E-value=86 Score=25.95 Aligned_cols=26 Identities=31% Similarity=0.733 Sum_probs=22.5
Q ss_pred EEEEEECCCChhhhhHHHHHHHHHHH
Q psy7938 193 VLVEFYAPWCGHCKQLAPIYDKLGEK 218 (305)
Q Consensus 193 ~lv~f~~~~C~~C~~~~~~~~~la~~ 218 (305)
.+.+.+.|-|+.|-...|.++++...
T Consensus 3 ~lhYifDPmCgWCyGa~Pll~~l~~~ 28 (212)
T COG3531 3 TLHYIFDPMCGWCYGAAPLLEALSAQ 28 (212)
T ss_pred eeEEecCcchhhhhCccHHHHHHHhc
Confidence 46778899999999999999998876
No 482
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=21.49 E-value=3.1e+02 Score=19.48 Aligned_cols=66 Identities=15% Similarity=0.147 Sum_probs=39.2
Q ss_pred CCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCcccc---ccCCcccccEEEEEeCCCceEEeeeCCCCHHHHHHHHHh
Q psy7938 200 PWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL---EHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVES 276 (305)
Q Consensus 200 ~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~~---~~~~i~~~Ptl~~f~~g~~~~~~~~g~~~~~~l~~fi~~ 276 (305)
.+|+.|++.+-.+.+.. -.+.+..+|....+. +..-...+|++. .+| . .. .+...|.++|.+
T Consensus 20 g~cpf~~rvrl~L~eKg------i~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~-~--~i----~eS~~I~eYLde 84 (91)
T cd03061 20 GNCPFCQRLFMVLWLKG------VVFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNG-E--VK----TDNNKIEEFLEE 84 (91)
T ss_pred CCChhHHHHHHHHHHCC------CceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECC-E--Ee----cCHHHHHHHHHH
Confidence 57999999876665542 234555566544332 223346789665 333 2 22 456788899887
Q ss_pred cCCC
Q psy7938 277 GGKE 280 (305)
Q Consensus 277 ~~~~ 280 (305)
....
T Consensus 85 ~~~~ 88 (91)
T cd03061 85 TLCP 88 (91)
T ss_pred HccC
Confidence 6543
No 483
>COG3411 Ferredoxin [Energy production and conversion]
Probab=21.42 E-value=2.1e+02 Score=19.00 Aligned_cols=35 Identities=23% Similarity=0.186 Sum_probs=25.7
Q ss_pred cccEEEEEeCCCceEEeeeCCCCHHHHHHHHHhcCCCCCC
Q psy7938 244 SFPTLKLYAKDDNRVIDYNGERVLEALSNFVESGGKEGGL 283 (305)
Q Consensus 244 ~~Ptl~~f~~g~~~~~~~~g~~~~~~l~~fi~~~~~~~~~ 283 (305)
.=|++++|+.| +.| +..+.+...++++++...+..
T Consensus 16 ~gPvl~vYpeg----vWY-~~V~p~~a~rIv~~hl~~Gr~ 50 (64)
T COG3411 16 DGPVLVVYPEG----VWY-TRVDPEDARRIVQSHLLGGRP 50 (64)
T ss_pred cCCEEEEecCC----eeE-eccCHHHHHHHHHHHHhCCCc
Confidence 34999999998 334 456888899999888754433
No 484
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=21.37 E-value=1.6e+02 Score=19.14 Aligned_cols=52 Identities=17% Similarity=0.314 Sum_probs=28.3
Q ss_pred EEEECCCChhhhhHHHHHHHHHHHhCCCCceEEEEEeCCccc--c-ccCCcccccEEEE
Q psy7938 195 VEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE--L-EHTKITSFPTLKL 250 (305)
Q Consensus 195 v~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~id~~~~~--~-~~~~i~~~Ptl~~ 250 (305)
..|+.+.|+.|.+.+-.+...+.. -.+....+|..... . .......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~~~----i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~ 56 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETGLG----DDVELVLVNPWSDDESLLAVNPLGKIPALVL 56 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhCCC----CCcEEEEcCcccCChHHHHhCCCCCCCEEEE
Confidence 357788899998876555442111 23455555532211 1 3334567887764
No 485
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=20.31 E-value=1.3e+02 Score=27.29 Aligned_cols=75 Identities=15% Similarity=0.248 Sum_probs=42.9
Q ss_pred CChhhhhHHHHHHH----HHHHhCCC-CceEEEEEeCCcccc-----ccCCccc-ccEEEEEeCCCceEEeeeCCCCHHH
Q psy7938 201 WCGHCKQLAPIYDK----LGEKFADR-DDITIAKIDATVNEL-----EHTKITS-FPTLKLYAKDDNRVIDYNGERVLEA 269 (305)
Q Consensus 201 ~C~~C~~~~~~~~~----la~~~~~~-~~v~~~~id~~~~~~-----~~~~i~~-~Ptl~~f~~g~~~~~~~~g~~~~~~ 269 (305)
-|+.|.+-...+.. +-+.+.+. ..+.++-+-|.-|.+ .+++|.+ -+...+|.+|+. .....+..-.+.
T Consensus 270 sCPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~-v~kv~~~~~~~~ 348 (360)
T PRK00366 270 SCPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEK-IKTLPEENIVEE 348 (360)
T ss_pred ECCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEE-eeeeChHhHHHH
Confidence 36667665444444 44445442 358888888865544 6778775 455667777644 555555444444
Q ss_pred HHHHHHh
Q psy7938 270 LSNFVES 276 (305)
Q Consensus 270 l~~fi~~ 276 (305)
|.+-|.+
T Consensus 349 l~~~i~~ 355 (360)
T PRK00366 349 LEAEIEA 355 (360)
T ss_pred HHHHHHH
Confidence 5444443
Done!