RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7938
(305 letters)
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 204 bits (521), Expect = 5e-64
Identities = 111/193 (57%), Positives = 148/193 (76%), Gaps = 1/193 (0%)
Query: 90 KVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVT 149
K+LF+ I++D D+Q+ILEFFG+ K+E P++RLI LEE+M KYKP + E++ + + F
Sbjct: 167 KILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCH 226
Query: 150 EFLAGNLKQHLLSQPLPEDWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLA 209
FL G +K HL+SQ LPEDWDK VKVLV NF+++AFD+ K+V VEFYAPWCGHCKQLA
Sbjct: 227 RFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLA 286
Query: 210 PIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKLYAKDDNR-VIDYNGERVLE 268
PI+DKLGE + D ++I IAK+D+T NE+E K+ SFPTLK + +R VIDYNGER L+
Sbjct: 287 PIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPTLKFFPASADRTVIDYNGERTLD 346
Query: 269 ALSNFVESGGKEG 281
F+ESGG++G
Sbjct: 347 GFKKFLESGGQDG 359
Score = 70.1 bits (171), Expect = 7e-14
Identities = 32/239 (13%), Positives = 63/239 (26%), Gaps = 20/239 (8%)
Query: 60 EDMAKY--KPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMSKDEV 117
+ P S + + + + E D K + D++
Sbjct: 5 SGLEVLFQGPGSEFATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDI 64
Query: 118 PSLRLIRLEEDMAKYKPATPEISV-----DTVRSFVTEFLAGNLKQHLLSQPLPEDWDKN 172
P + + +KY+ + + + +F E NL + LP
Sbjct: 65 P-FGITSNSDVFSKYQLDKDGVVLFKKFDEGRNNFEGEVTKENLLDFIKHNQLP------ 117
Query: 173 AVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDA 232
V +I + K ++ F + E F + D
Sbjct: 118 LVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDH 177
Query: 233 TVN----ELEHTKITSFPTLKLYAKDDNRV--IDYNGERVLEALSNFVESGGKEGGLPS 285
T N E K P ++L ++ + E E ++ F + P
Sbjct: 178 TDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPH 236
Score = 32.7 bits (74), Expect = 0.14
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 1 MSKDEVPSLRLIRLEEDMAKYKPATPEINVDTVRSFVTEFLAGNLKHS 48
+ K+E P++RLI LEE+M KYKP + E+ + + F FL G +K
Sbjct: 189 LKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPH 236
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines
missing, unknown funct; 1.50A {Trypanosoma cruzi}
Length = 127
Score = 162 bits (412), Expect = 1e-50
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 7/122 (5%)
Query: 161 LSQPLPEDWD-KNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKF 219
++ + D + + V L FD I D K V V +Y PW H ++D L
Sbjct: 3 MASNVANDGERPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQ 62
Query: 220 A---DRDDITIAKIDATVNELEHTK--ITSFPTLKLYAKDD-NRVIDYNGERVLEALSNF 273
+ + A+ID + ++ FPT++ Y + D +Y+G+R L + +F
Sbjct: 63 SQKRNHLTFVAARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSF 122
Query: 274 VE 275
V
Sbjct: 123 VF 124
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Length = 121
Score = 158 bits (401), Expect = 5e-49
Identities = 52/116 (44%), Positives = 73/116 (62%), Gaps = 5/116 (4%)
Query: 168 DWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFAD---RDD 224
+ V V+VA N++EI D +K VL+EFYAPWCGHCK LAP Y++LG +A +D
Sbjct: 3 LGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDR 62
Query: 225 ITIAKIDATVNELEHTKITSFPTLKLYAKDD-NRVIDYNGERVLEALSNFVESGGK 279
+ IAK+DAT N++ +I FPT+KLY + + Y+G R +E L F+ GK
Sbjct: 63 VVIAKVDATANDVPD-EIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGK 117
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 133
Score = 157 bits (398), Expect = 2e-48
Identities = 49/115 (42%), Positives = 66/115 (57%), Gaps = 4/115 (3%)
Query: 169 WDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIA 228
VKV+V FD I D K VL+EFYAPWCGHCKQL PIY LG+K+ + D+ IA
Sbjct: 4 GSSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIA 63
Query: 229 KIDATVNELEHTK--ITSFPTLKLYAKDDNR--VIDYNGERVLEALSNFVESGGK 279
K+DAT N++ + + + FPT+ D + + G R LE LS F++
Sbjct: 64 KMDATANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHAT 118
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP:
c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Length = 504
Score = 160 bits (404), Expect = 1e-45
Identities = 66/208 (31%), Positives = 102/208 (49%), Gaps = 15/208 (7%)
Query: 85 LAGNLKVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPE------ 138
LA + L ++ D + M K++ P + + ED+ P E
Sbjct: 262 LAKKNRGLMNFVSIDARKFGRHAGNLNM-KEQFPLFAIHDMTEDLKYGLPQLSEEAFDEL 320
Query: 139 -----ISVDTVRSFVTEFLAGNLKQHLLSQPLPEDWDKNAVKVLVASNFDEIAFDKSKHV 193
+ + S V +FL G+ + SQ + E+ D + V LV N DEI D K V
Sbjct: 321 SDKIVLESKAIESLVKDFLKGDASPIVKSQEIFENQDSS-VFQLVGKNHDEIVNDPKKDV 379
Query: 194 LVEFYAPWCGHCKQLAPIYDKLGEKFAD-RDDITIAKIDATVNELEHTKITSFPTLKLYA 252
LV +YAPWCGHCK+LAP Y +L + +A+ D+ IAK+D T N++ I +PT+ LY
Sbjct: 380 LVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVIEGYPTIVLYP 439
Query: 253 KDD-NRVIDYNGERVLEALSNFVESGGK 279
+ + Y G R L++L +F++ G
Sbjct: 440 GGKKSESVVYQGSRSLDSLFDFIKENGH 467
Score = 116 bits (292), Expect = 1e-29
Identities = 45/121 (37%), Positives = 64/121 (52%), Gaps = 7/121 (5%)
Query: 159 HLLSQPLPEDWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEK 218
H+ + + + +AV L +F+E VL EF+APWCGHCK +AP Y K E
Sbjct: 3 HMQQEAVAPE--DSAVVKLATDSFNEY-IQSHDLVLAEFFAPWCGHCKNMAPEYVKAAET 59
Query: 219 FADRDDITIAKIDATVNE--LEHTKITSFPTLKLYAK-DDNRVIDYNGERVLEALSNFVE 275
+ +IT+A+ID T N+ I FP+LK++ D N IDY G R EA+ F+
Sbjct: 60 LVE-KNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMI 118
Query: 276 S 276
Sbjct: 119 K 119
Score = 34.1 bits (77), Expect = 0.060
Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 3/110 (2%)
Query: 171 KNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKI 230
+ L F +S + +F A + + YD + + AD D +
Sbjct: 129 ADLPAYLANETFVTPVIVQSGKIDADFNATFYSMANKHFNDYDFVSAENADDDFKLSIYL 188
Query: 231 DATVNELEH---TKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVESG 277
+ ++E K + Y GE + +VESG
Sbjct: 189 PSAMDEPVVYNGKKADIADADVFEKWLQVEALPYFGEIDGSVFAQYVESG 238
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 153 bits (387), Expect = 3e-43
Identities = 70/247 (28%), Positives = 110/247 (44%), Gaps = 5/247 (2%)
Query: 35 SFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFV 94
N + K L + + D K S + V +FL K+ F
Sbjct: 218 GICPHMTEDNKDLIQGKDLLIAYYDVDYEKNAKGSNYW-RNRVMMVAKKFLDAGHKLNFA 276
Query: 95 TINTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFLAG 154
+ H+ + E+P + IR + + F+ ++ G
Sbjct: 277 VASRKTFSHELSDFGLESTAGEIPVVA-IRTAKGEKFVMQEEFSRDGKALERFLQDYFDG 335
Query: 155 NLKQHLLSQPLPEDWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDK 214
NLK++L S+P + + VKV+VA NFDEI +++K VL+EFYAPWCGHCK L P Y +
Sbjct: 336 NLKRYLKSEP-IPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKE 394
Query: 215 LGEKFADRDDITIAKIDATVNELEHT-KITSFPTLKLYAKDD-NRVIDYNGERVLEALSN 272
LGEK + +I IAK+DAT N++ ++ FPT+ + Y G R L +
Sbjct: 395 LGEKLSKDPNIVIAKMDATANDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFIS 454
Query: 273 FVESGGK 279
+++
Sbjct: 455 YLQREAT 461
Score = 105 bits (262), Expect = 1e-25
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 7/109 (6%)
Query: 172 NAVKVLVASNFDEIAFDKSKH--VLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAK 229
+ V L NF+ D +LVEF+APWCGH K+LAP Y+ + + +AK
Sbjct: 1 SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLK--GIVPLAK 58
Query: 230 IDATVNELEHTK--ITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVES 276
+D T N K ++ +PTLK++ +D Y+G R + + + ++
Sbjct: 59 VDCTANTNTCNKYGVSGYPTLKIF-RDGEEAGAYDGPRTADGIVSHLKK 106
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing
protein 7, endoplasmic reticulum, redox-active center,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 130
Score = 138 bits (349), Expect = 4e-41
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 170 DKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAK 229
+ V L SNF+ LVEFYAPWCGHC++L P + K +D + +
Sbjct: 15 SSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATAL--KDVVKVGA 72
Query: 230 IDATVNEL--EHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVESGGKEG 281
++A ++ + FPT+K++ + N+ DY G R EA+ + S + G
Sbjct: 73 VNADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALRSG 126
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
like domain, redox, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 133
Score = 132 bits (334), Expect = 8e-39
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Query: 170 DKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDD--ITI 227
V L +FD+ D +VEFYAPWCGHCK L P + + ++ + +
Sbjct: 5 SSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKL 64
Query: 228 AKIDATVNEL--EHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVESGGKEGGLPS 285
A +DATVN++ I FPT+K++ + +DY+G R + + + P
Sbjct: 65 AAVDATVNQVLASRYGIRGFPTIKIF-QKGESPVDYDGGRTRSDIVSRALDLFSDNAPPP 123
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 140
Score = 130 bits (329), Expect = 5e-38
Identities = 45/117 (38%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 162 SQPLPEDWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFAD 221
E ++N V VL NFD VL+EFYAPWCGHCKQ AP Y+K+ D
Sbjct: 7 GDDDLEVKEENGVWVLNDGNFDNFV-ADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKD 65
Query: 222 RD-DITIAKIDATVNEL--EHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVE 275
D I +AKIDAT + ++ +PT+K+ K +DY+G R E + V
Sbjct: 66 NDPPIAVAKIDATSASMLASKFDVSGYPTIKILKKGQ--AVDYDGSRTQEEIVAKVR 120
>1mek_A Protein disulfide isomerase; electron transport, redox-active
center, endoplasmic reticulum; NMR {Homo sapiens} SCOP:
c.47.1.2
Length = 120
Score = 127 bits (321), Expect = 5e-37
Identities = 44/115 (38%), Positives = 61/115 (53%), Gaps = 7/115 (6%)
Query: 166 PEDWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRD-D 224
PE+ D V VL SNF E A K++LVEFYAPWCGHCK LAP Y K K +
Sbjct: 3 PEEED--HVLVLRKSNFAE-ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSE 59
Query: 225 ITIAKIDATVNEL--EHTKITSFPTLKLYAKDDNR-VIDYNGERVLEALSNFVES 276
I +AK+DAT + + +PT+K + D +Y R + + N+++
Sbjct: 60 IRLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKK 114
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
Length = 111
Score = 126 bits (318), Expect = 1e-36
Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 6/107 (5%)
Query: 173 AVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEK-FADRDDITIAKID 231
V L +NFD+ ++FYAPWCGHCK LAP +++L +K F + IA++D
Sbjct: 6 TVLALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVD 63
Query: 232 ATVNEL--EHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVES 276
T + +PTL L+ + +V +++G R L++L FV S
Sbjct: 64 CTAERNICSKYSVRGYPTLLLF-RGGKKVSEHSGGRDLDSLHRFVLS 109
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 125 bits (315), Expect = 5e-36
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 8/108 (7%)
Query: 170 DKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAK 229
V+V+ N+ E+ ++EFYAPWC C+ L P ++ E D ++ IAK
Sbjct: 5 SSGNVRVITDENWRELL---EGDWMIEFYAPWCPACQNLQPEWESFAEWGED-LEVNIAK 60
Query: 230 IDATVNEL--EHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVE 275
+D T I + PT+ + Y G R + NF+
Sbjct: 61 VDVTEQPGLSGRFIINALPTIYHCKDGE--FRRYQGPRTKKDFINFIS 106
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 123 bits (311), Expect = 4e-34
Identities = 47/121 (38%), Positives = 64/121 (52%), Gaps = 6/121 (4%)
Query: 159 HLLSQPLPEDWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEK 218
L S+ E ++N V VL +NFD VL+EFYAPWCGHCKQ AP Y+K+
Sbjct: 2 PLGSEDDLEVKEENGVLVLNDANFDNFV-ADKDTVLLEFYAPWCGHCKQFAPEYEKIANI 60
Query: 219 FADRD-DITIAKIDATVNEL--EHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVE 275
D+D I +AKIDAT + ++ +PT+K+ K +DY G R E + V
Sbjct: 61 LKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKGQ--AVDYEGSRTQEEIVAKVR 118
Query: 276 S 276
Sbjct: 119 E 119
Score = 102 bits (256), Expect = 4e-26
Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 7/128 (5%)
Query: 153 AGNLKQHLLSQPLPEDWD-KNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPI 211
+ + P+ VL NFDE+ + + +LVEFYAPWCGHCK+LAP
Sbjct: 110 QEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVV-NDADIILVEFYAPWCGHCKKLAPE 168
Query: 212 YDKLGEKFADRDD-ITIAKIDATVNE--LEHTKITSFPTLKLYAKDDNRVIDYNGERVLE 268
Y+K ++ + R I +AK+DAT + ++ +PTLK++ R DYNG R
Sbjct: 169 YEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIF--RKGRPYDYNGPREKY 226
Query: 269 ALSNFVES 276
+ +++
Sbjct: 227 GIVDYMIE 234
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 127 bits (320), Expect = 5e-33
Identities = 34/191 (17%), Positives = 67/191 (35%), Gaps = 33/191 (17%)
Query: 88 NLKVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSF 147
N + V D I + + PSL + + + +Y+ + + + +F
Sbjct: 380 NEHIQVVRF--DCSSAPGICSDLYVFQ---PSLAVFK-GQGTKEYEIHHGKKILYDILAF 433
Query: 148 VTEFLAGNLKQHLLSQPLPEDWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQ 207
E + + V L NF + LV+F+APW +
Sbjct: 434 AKESVNSH------------------VTTLGPQNFPA---SDKEPWLVDFFAPWSPPSRA 472
Query: 208 LAPIYDKLGEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLYAKDDNRVIDYNGER 265
L P K + + +D T++E I ++PT ++ + + + +Y G
Sbjct: 473 LLPELRKASTLL--YGQLKVGTLDCTIHEGLCNMYNIQAYPTTVVF--NQSSIHEYEGHH 528
Query: 266 VLEALSNFVES 276
E + F+E
Sbjct: 529 SAEQILEFIED 539
Score = 127 bits (320), Expect = 5e-33
Identities = 30/194 (15%), Positives = 64/194 (32%), Gaps = 31/194 (15%)
Query: 90 KVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAK--YKPATPEISVDTVRSF 147
+ +++ + + + P +R + A + ++RS+
Sbjct: 595 LINVGSVDCGQ--YHSFCTQENVQ--RYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSW 650
Query: 148 VTEFLAGNLKQHLLSQPLPEDWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQ 207
FL A L F+E H +V+FYAPW G +
Sbjct: 651 GLGFL------------------PQASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQN 692
Query: 208 LAPIYDKLGEKFADRDDITIAKIDATVNE--LEHTKITSFPTLKLYAKDDNR---VIDYN 262
AP ++ L + + K+D + I ++P++KLY + + +
Sbjct: 693 FAPEFELLARMI--KGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQI 750
Query: 263 GERVLEALSNFVES 276
R + ++ +
Sbjct: 751 NSRDAKTIAALIYG 764
Score = 86.7 bits (214), Expect = 3e-19
Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 6/111 (5%)
Query: 168 DWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITI 227
D + L FD A + + V FY+P H LAP + + ++ + I
Sbjct: 112 YDDDPEIITLERREFDA-AVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEV--DGLLRI 168
Query: 228 AKIDATVNEL--EHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVES 276
++ + + + S+P+L ++ + + YNG+R E+L F
Sbjct: 169 GAVNCGDDRMLCRMKGVNSYPSLFIF-RSGMAAVKYNGDRSKESLVAFAMQ 218
Score = 65.2 bits (158), Expect = 6e-12
Identities = 11/107 (10%), Positives = 28/107 (26%), Gaps = 4/107 (3%)
Query: 171 KNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKI 230
++ V L NF + + V + +C + +L + + +
Sbjct: 221 RSTVTELSTGNFVNA-IETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWV 279
Query: 231 DATVNE--LEHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVE 275
D + + T+ T + + + E
Sbjct: 280 DCDAQDSLCKSLDTTASTT-AYFPPGATLNDREKSSVLFLNSLDAKE 325
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain
(residues 33-153), D domain (residues 154-261), CHA;
2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Length = 240
Score = 117 bits (294), Expect = 1e-31
Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 13/123 (10%)
Query: 172 NAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKID 231
L F ++ KSK VLV+F + KQ + +L E A DD+ +A++
Sbjct: 5 KGALPLDTVTFYKVI-PKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVG 61
Query: 232 ATVNELEHTK---------ITSFPTLKLYAKDDNR-VIDYNGERVLEALSNFVESGGKEG 281
+ + S+P L+ D + Y G + A+ +++ G
Sbjct: 62 ISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQGVYL 121
Query: 282 GLP 284
G+P
Sbjct: 122 GMP 124
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif,
endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Length = 122
Score = 111 bits (279), Expect = 8e-31
Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 7/109 (6%)
Query: 173 AVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDA 232
A L F+E H +V+FYAPWCG C+ AP ++ L + + K+D
Sbjct: 4 ASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGK--VRAGKVDC 61
Query: 233 TVNELEHTK--ITSFPTLKLY---AKDDNRVIDYNGERVLEALSNFVES 276
K I ++P++KLY + + R + ++ +
Sbjct: 62 QAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYG 110
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin,
thioredoxin fold, oxidoreductase, reductive methylation;
HET: MLY; 2.05A {Homo sapiens}
Length = 244
Score = 113 bits (284), Expect = 3e-30
Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 8/115 (6%)
Query: 170 DKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDD-ITIA 228
+ + +L A VEF+A WCGHC AP + L E + +A
Sbjct: 10 PSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLA 69
Query: 229 KIDATVNELEHT----KITSFPTLKLYAK---DDNRVIDYNGERVLEALSNFVES 276
+D I FPT++ + + + + ++ L +
Sbjct: 70 ALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLID 124
Score = 75.4 bits (185), Expect = 4e-16
Identities = 20/197 (10%), Positives = 60/197 (30%), Gaps = 18/197 (9%)
Query: 82 TEFLAGNLKVLFVTINTDEEDHQKILEFFGMSKDEVPSLRL-IRLEEDMAKYKPATPEIS 140
+ A + ++ EE + + F + P++R + +
Sbjct: 57 EDVKAWRPALYLAALDCAEETNSAVCRDFNIPG--FPTVRFFXAFTXNGSGAVFPVAGAD 114
Query: 141 VDTVRSFVTEFLAGNLKQHLLSQPLPEDWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAP 200
V T+R + + L + + P E + A + +++ + F
Sbjct: 115 VQTLRERLIDALESHHDTWPPACPPLEP-------AXLEEIDGFFARNNEEYLALIFEXG 167
Query: 201 WCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL-EHTKITSFPTLKLYAKDDNRVI 259
+++A + + + ++ T + +T FP+ L ++ +
Sbjct: 168 GSYLAREVAL-------DLSQHKGVAVRRVLNTEANVVRKFGVTDFPSCYLLFRNGSVSR 220
Query: 260 DYNGERVLEALSNFVES 276
+ +++
Sbjct: 221 VPVLMESRSFYTAYLQR 237
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC,
endoplasmic reticulum, glycoprotein, redox-active
center; 2.00A {Saccharomyces cerevisiae}
Length = 298
Score = 108 bits (271), Expect = 8e-28
Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 18/125 (14%)
Query: 170 DKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAK 229
+ L +FD+ + + LVEFYAPWCGHCK+L+ + K ++ +
Sbjct: 15 SDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVN 74
Query: 230 IDATVNEL--EHTKITSFPTLKLYAK----------------DDNRVIDYNGERVLEALS 271
D N+ + FPTL ++ + Y+G R L +
Sbjct: 75 CDLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIV 134
Query: 272 NFVES 276
+F S
Sbjct: 135 DFSLS 139
Score = 55.5 bits (133), Expect = 5e-09
Identities = 31/219 (14%), Positives = 69/219 (31%), Gaps = 45/219 (20%)
Query: 85 LAGNLKVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEI----- 139
L G ++V V N D ++ + + ++ P+L + R + +
Sbjct: 64 LDGVVQVAAV--NCDLNKNKALCAKYDVNG--FPTLMVFRPPKIDLSKPIDNAKKSFSAH 119
Query: 140 ---------SVDTVRSFVTEFLAGNLKQHLLSQPLPEDWDKNAVKVLV---------ASN 181
++ + F + + + + + + K+ V +
Sbjct: 120 ANEVYSGARTLAPIVDFSLSRI-RSYVKKFVRIDTLGSLLRKSPKLSVVLFSKQDKISPV 178
Query: 182 FDEIAFDKSKHVLVEFYAPWCGHCKQLA---PIYDKLGEKFADRDDITIAKIDATVNELE 238
+ IA D +FY+ KQL P Y+K E F + + +
Sbjct: 179 YKSIALDWLGKF--DFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSD----- 231
Query: 239 HTKITSFPTLKLYAKDDNRVIDYNGERV-LEALSNFVES 276
L ++ D ++ +Y G + +S F+
Sbjct: 232 ------KSKLVVFDADKDKFWEYEGNSINKNDISKFLRD 264
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 110 bits (276), Expect = 2e-27
Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 8/113 (7%)
Query: 170 DKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDD-ITIA 228
+ + +L A + S VEF+A WCGH AP + +L D + +A
Sbjct: 10 SSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLA 69
Query: 229 KIDATVNELEHT----KITSFPTLKLY---AKDDNRVIDYNGERVLEALSNFV 274
+D I FPT++ + K+ + ++ L +
Sbjct: 70 VLDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRL 122
Score = 53.0 bits (126), Expect = 4e-08
Identities = 21/197 (10%), Positives = 63/197 (31%), Gaps = 18/197 (9%)
Query: 82 TEFLAGNLKVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRL-EEDMAKYKPATPEIS 140
+ + ++ EE + + F ++ P++R + ++ + +
Sbjct: 57 NDVKDWRPALNLAVLDCAEETNSAVCREFNIAG--FPTVRFFQAFTKNGSGATLPGAGAN 114
Query: 141 VDTVRSFVTEFLAGNLKQHLLSQPLPEDWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAP 200
V T+R + + L + + P E N + N + ++ E
Sbjct: 115 VQTLRMRLIDALESHRDTWPPACPPLEPAKLNDIDGFFTRNKADY-----LALVFEREDS 169
Query: 201 WCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHT-KITSFPTLKLYAKDDNRVI 259
+ G + + + ++ T ++L + +T FP+ L ++ +
Sbjct: 170 YLGREVT---------LDLSQYHAVAVRRVLNTESDLVNKFGVTDFPSCYLLLRNGSVSR 220
Query: 260 DYNGERVLEALSNFVES 276
++++
Sbjct: 221 VPVLVESRSFYTSYLRG 237
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 103 bits (257), Expect = 3e-25
Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Query: 173 AVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFAD----RDDITIA 228
+ L N DEI + + LV FYA WC + L PI+++ + + + + A
Sbjct: 6 EITSLDTENIDEI-LNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFA 64
Query: 229 KIDATVNE--LEHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVES 276
++D + + +I+ +PTLKL+ +Y G+R ++AL++++
Sbjct: 65 RVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQ 114
Score = 76.9 bits (189), Expect = 4e-16
Identities = 21/151 (13%), Positives = 45/151 (29%), Gaps = 12/151 (7%)
Query: 65 YKPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIR 124
+ E + ++ + F+ + D+ H L + + P + I
Sbjct: 244 HMKEDTESLEIFQNEVARQLISEKGTINFLHADCDKFRHP--LLHIQKTPADCPVIA-ID 300
Query: 125 LEEDMAKYKPATPEISVDTVRSFVTEFLAGNLKQHLLSQPLPEDWDKNAVKVLVASNFDE 184
M + + ++ FV + +G L + P P D +
Sbjct: 301 SFRHMYVFGDFKDVLIPGKLKQFVFDLHSGKLHREFHHGPDPTDTA-------PGEQAQD 353
Query: 185 IAFDKSKHVLVEFYAPWCGHCKQLAPIYDKL 215
+A + + AP + L D+L
Sbjct: 354 VASSPPESSFQKL-AP-SEYRYTLLRDRDEL 382
Score = 35.0 bits (80), Expect = 0.029
Identities = 7/48 (14%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 1 MSKDEVPSLRLIRLEEDMAKYKPATPEINVDTVRSFVTEFLAGNLKHS 48
+ + P + I M + + ++ FV + +G L
Sbjct: 289 KTPADCPVIA-IDSFRHMYVFGDFKDVLIPGKLKQFVFDLHSGKLHRE 335
Score = 28.0 bits (62), Expect = 4.5
Identities = 23/230 (10%), Positives = 64/230 (27%), Gaps = 22/230 (9%)
Query: 60 EDMAKY--KPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMSKDEV 117
+ +A Y + S I + +T ++ D ++++ F ++
Sbjct: 106 KALADYIRQQKSDPIQEIRDLAEITTLDRSKRNIIGYFEQKDSDNYR---VFERVANILH 162
Query: 118 PSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFL--------AGNLKQHLLSQPLPEDW 169
+ D++K + + + + + + + +P
Sbjct: 163 DDCAFLSAFGDVSKPERYSGDNIIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCVPL-- 220
Query: 170 DKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAK 229
V+ + N +E+ + +++ + + + A
Sbjct: 221 ----VREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHAD 276
Query: 230 IDATVNELEH--TKITSFPTLKLYAKDDNRVI-DYNGERVLEALSNFVES 276
D + L H P + + + V D+ + L FV
Sbjct: 277 CDKFRHPLLHIQKTPADCPVIAIDSFRHMYVFGDFKDVLIPGKLKQFVFD 326
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 100 bits (249), Expect = 2e-24
Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 12/121 (9%)
Query: 164 PLPEDWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLG------E 217
P K+ V L NF ++ K VL +Y K +
Sbjct: 3 NFPTYDGKDRVVSLTEKNFKQVL--KKYDVLCLYYHESVSSDKVAQKQFQLKEIVLELVA 60
Query: 218 KFADRDDITIAKIDATVNE--LEHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVE 275
+ + DI +DA + +L + +R I+++GE + L F+
Sbjct: 61 QVLEHKDIGFVMVDAKKEAKLAKKLGFDEEGSLYVLK--GDRTIEFDGEFAADVLVEFLL 118
Query: 276 S 276
Sbjct: 119 D 119
Score = 50.1 bits (119), Expect = 3e-07
Identities = 5/73 (6%), Positives = 26/73 (35%), Gaps = 6/73 (8%)
Query: 90 KVLFVTINTDEEDHQKILEFFGMS------KDEVPSLRLIRLEEDMAKYKPATPEISVDT 143
+ D +D ++ ++ + K ++ + + + + + +
Sbjct: 277 NPDLSIVWIDPDDFPLLVAYWEKTFKIDLFKPQIGVVNVTDADSVWMEIPDDDDLPTAEE 336
Query: 144 VRSFVTEFLAGNL 156
+ ++ + L+G +
Sbjct: 337 LEDWIEDVLSGKI 349
Score = 38.9 bits (90), Expect = 0.001
Identities = 11/111 (9%), Positives = 27/111 (24%), Gaps = 8/111 (7%)
Query: 167 EDWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDIT 226
+ + + + + L+ F+ + +++ E F
Sbjct: 119 DLIEDPVEIINSKLEVQAFERIEDQIKLIGFFK---SEESEYYKAFEEAAEHFQPYIKFF 175
Query: 227 IAKIDATVNELEHTKITSFPTLKLYAK-DDNRVIDYNGERVLEALSNFVES 276
+L + Y D + + E L FV+
Sbjct: 176 ATFDKGVAKKLS----LKMNEVDFYEPFMDEPIAIPDKPYTEEELVEFVKE 222
Score = 36.2 bits (83), Expect = 0.009
Identities = 3/45 (6%), Positives = 17/45 (37%)
Query: 1 MSKDEVPSLRLIRLEEDMAKYKPATPEINVDTVRSFVTEFLAGNL 45
+ K ++ + + + + + + ++ + L+G +
Sbjct: 305 LFKPQIGVVNVTDADSVWMEIPDDDDLPTAEELEDWIEDVLSGKI 349
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 97.0 bits (240), Expect = 8e-23
Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 11/136 (8%)
Query: 156 LKQHLLSQPLPEDWDKN-AVKVLVASNFDE-IAFDKSKHVLVEFYAPWCGHCKQLAPIYD 213
+ Q P P + + +V L +F +V FY CG C++ A +
Sbjct: 6 VAQVATGSPRPGLFHLDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFS 65
Query: 214 KLGEKFADRDD------ITIAKIDATVNEL--EHTKITSFPTLKLY-AKDDNRVIDYNGE 264
K T A ++ I P L + +D R + G
Sbjct: 66 KFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRSNEECGT 125
Query: 265 RVLEALSNFVESGGKE 280
LE ++ +
Sbjct: 126 SSLEHVAFENSHLEVD 141
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 94.7 bits (235), Expect = 3e-22
Identities = 19/123 (15%), Positives = 47/123 (38%), Gaps = 12/123 (9%)
Query: 162 SQPLPEDWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQ------LAPIYDKL 215
PE + V + A N+ + F K + + + ++ P I +
Sbjct: 3 GLDFPEYDGVDRVINVNAKNYKNV-FKKYEVLALLYHEPPEDDKASQRQFEMEELILELA 61
Query: 216 GEKFADRDDITIAKIDATVNEL--EHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNF 273
+ D+ + +D+ + + +T ++ ++ ++ VI+Y+GE + L F
Sbjct: 62 AQVLEDK-GVGFGLVDSEKDAAVAKKLGLTEEDSIYVFK--EDEVIEYDGEFSADTLVEF 118
Query: 274 VES 276
+
Sbjct: 119 LLD 121
Score = 63.1 bits (153), Expect = 2e-11
Identities = 9/89 (10%), Positives = 29/89 (32%), Gaps = 6/89 (6%)
Query: 90 KVLFVTINTDEEDHQKILEFF------GMSKDEVPSLRLIRLEEDMAKYKPATPEISVDT 143
I D +D ++ ++ +S ++ + + + + S +
Sbjct: 279 NPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDADSVWMEMDDEEDLPSAEE 338
Query: 144 VRSFVTEFLAGNLKQHLLSQPLPEDWDKN 172
+ ++ + L G + +D D +
Sbjct: 339 LEDWLEDVLEGEINTEDDDDEDDDDDDDD 367
Score = 34.6 bits (79), Expect = 0.038
Identities = 3/45 (6%), Positives = 16/45 (35%)
Query: 2 SKDEVPSLRLIRLEEDMAKYKPATPEINVDTVRSFVTEFLAGNLK 46
S ++ + + + + + + + ++ + L G +
Sbjct: 308 SAPQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDVLEGEIN 352
Score = 32.7 bits (74), Expect = 0.12
Identities = 26/180 (14%), Positives = 53/180 (29%), Gaps = 23/180 (12%)
Query: 110 FGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFLAGNLKQHLLSQPLPEDW 169
F + D + +L ++ Y+ E + E + +++H +
Sbjct: 176 FFATFDSKVAKKLTLKLNEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEH--RRST---- 229
Query: 170 DKNAVKVLVASNFDEI-AFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIA 228
++ L + E D +V F + I + + D D++I
Sbjct: 230 ----LRKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSII 285
Query: 229 KIDATVNELEHTKIT-------SFPTLKLYAKDDN-----RVIDYNGERVLEALSNFVES 276
ID L S P + + D + D E L +++E
Sbjct: 286 WIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLED 345
>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone,
endoplasmic reticulum, isomeras membrane, redox-active
center; 2.20A {Homo sapiens}
Length = 147
Score = 88.9 bits (220), Expect = 6e-22
Identities = 44/83 (53%), Positives = 61/83 (73%)
Query: 90 KVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVT 149
K+LF I++D D+Q+ILEFFG+ K+E P++RLI LEE+M KYKP + E++ + + F
Sbjct: 64 KILFAFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCH 123
Query: 150 EFLAGNLKQHLLSQPLPEDWDKN 172
FL G +K HL+SQ LPEDWDK
Sbjct: 124 RFLEGKIKPHLMSQELPEDWDKQ 146
Score = 42.7 bits (100), Expect = 2e-05
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 1 MSKDEVPSLRLIRLEEDMAKYKPATPEINVDTVRSFVTEFLAGNLK 46
+ K+E P++RLI LEE+M KYKP + E+ + + F FL G +K
Sbjct: 86 LKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIK 131
Score = 41.2 bits (96), Expect = 7e-05
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 44 NLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLK 90
LK + I LEE+M KYKP S E+ + + F FL G +K
Sbjct: 85 GLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIK 131
>2l57_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, PSI protein structure initiative; NMR
{Clostridium perfringens}
Length = 126
Score = 76.7 bits (189), Expect = 9e-18
Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 3/110 (2%)
Query: 178 VASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL 237
+ + + ++ F C +C ++ + ++ + +I A+++ N
Sbjct: 14 INVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNID 73
Query: 238 EHTK--ITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVES-GGKEGGLP 284
K PT K+ N+ + G + + S G KEG
Sbjct: 74 LAYKYDANIVPTTVFLDKEGNKFYVHQGLMRKNNIETILNSLGVKEGHHH 123
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Length = 133
Score = 76.0 bits (187), Expect = 2e-17
Identities = 17/81 (20%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 90 KVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVT 149
+ F TI D + + D+ P+ + + ++ EI+ + +++FV
Sbjct: 54 VINFGTI--DAKAFGAHAGNLNLKTDKFPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVD 111
Query: 150 EFLAGNLKQHLLSQPLPEDWD 170
+F+AG ++ + S+P+PE +
Sbjct: 112 DFVAGKIEPSIKSEPIPEKQE 132
Score = 36.7 bits (85), Expect = 0.002
Identities = 10/48 (20%), Positives = 25/48 (52%)
Query: 1 MSKDEVPSLRLIRLEEDMAKYKPATPEINVDTVRSFVTEFLAGNLKHS 48
+ D+ P+ + + ++ EI + +++FV +F+AG ++ S
Sbjct: 74 LKTDKFPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKIEPS 121
Score = 33.3 bits (76), Expect = 0.029
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 44 NLKHSKFKKNLYIHLEEDMAKYK-PASPEINVDTVRSFVTEFLAGNLK 90
NLK KF I K+ EI + +++FV +F+AG ++
Sbjct: 73 NLKTDKFPAFA-IQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKIE 119
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A
{Rhodobacter capsulatus}
Length = 155
Score = 73.7 bits (181), Expect = 3e-16
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 5/99 (5%)
Query: 180 SNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEH 239
A +LV+F+APWCG C+Q+AP + A + + +AKID +
Sbjct: 54 PAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQ--VRLAKIDTQAHPAVA 111
Query: 240 TK--ITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVES 276
+ I P L+ + G R L FV
Sbjct: 112 GRHRIQGIPAFILF-HKGRELARAAGARPASELVGFVRG 149
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 71.6 bits (176), Expect = 6e-16
Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 7/106 (6%)
Query: 173 AVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDA 232
A++ + F+ +V F+ C HCK + + DK G + + I+ +D+
Sbjct: 3 AIRDITTEAGMAH-FEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARA---PQVAISSVDS 58
Query: 233 TVN-EL-EHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVES 276
EL + PTL +D ++G L S
Sbjct: 59 EARPELMKELGFERVPTLVFI-RDGKVAKVFSGIMNPRELQALYAS 103
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE,
fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Length = 121
Score = 71.2 bits (175), Expect = 8e-16
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 173 AVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDA 232
+V+V+ + + + K V+++F+A WCG CK + P+++K+ + A D + K+D
Sbjct: 16 SVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAG-DKVGFYKVD- 73
Query: 233 TVNELEHT----KITSFPTLKLYAKDDNRV 258
V+E I + PT + K+ ++
Sbjct: 74 -VDEQSQIAQEVGIRAMPTFVFF-KNGQKI 101
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.82A {Thermus
thermophilus}
Length = 140
Score = 70.1 bits (172), Expect = 3e-15
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
Query: 173 AVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDA 232
V F + + LV+F+APWCG C+ ++PI ++L A R + + K++
Sbjct: 34 WVVEADEKGFAQEVA-GAPLTLVDFFAPWCGPCRLVSPILEELARDHAGR--LKVVKVNV 90
Query: 233 TVNELEHTK--ITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVES 276
+ + + S PTL L+ + V + G L +
Sbjct: 91 DEHPGLAARYGVRSVPTLVLF-RRGAPVATWVGASPRRVLEERLRP 135
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.19A {Yersinia pestis}
Length = 148
Score = 70.2 bits (172), Expect = 4e-15
Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 180 SNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEH 239
D++ ++++F+APWCG C+ API+ + + A + + K++
Sbjct: 46 ETLDKLL-QDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGK--VRFVKVNTEAEPALS 102
Query: 240 TK--ITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVES 276
T+ I S PT+ LY ++ + NG N+++
Sbjct: 103 TRFRIRSIPTIMLY-RNGKMIDMLNGAVPKAPFDNWLDE 140
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion,
electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB:
1uvz_A 1w89_A
Length = 119
Score = 69.3 bits (170), Expect = 4e-15
Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 172 NAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKID 231
+ +F + + V+V+F+A WCG CK L P +K+ K + + +AK+D
Sbjct: 13 TTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGK--VVMAKVD 70
Query: 232 ATVNELEHTK--ITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVES 276
+ + +++ PT+ K+ + V + G + + L F++
Sbjct: 71 IDDHTDLAIEYEVSAVPTVLAM-KNGDVVDKFVGIKDEDQLEAFLKK 116
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Length = 118
Score = 69.0 bits (169), Expect = 6e-15
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 13/113 (11%)
Query: 170 DKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAK 229
D + VLV+F+A WCG C++L I + E D+T K
Sbjct: 3 DPIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN---KDVTFIK 59
Query: 230 IDATVNELEHT----KITSFPTLKLYAKDDNRVIDYNGERV---LEALSNFVE 275
+D V++ + ++S P L K + I + V + + +E
Sbjct: 60 VD--VDKNGNAADAYGVSSIPALFFV-KKEGNEIKTLDQFVGADVSRIKADIE 109
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure
initiative, structural genomics; 2.30A {Methanosarcina
mazei}
Length = 140
Score = 69.4 bits (170), Expect = 7e-15
Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 5/107 (4%)
Query: 172 NAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKID 231
+++ + + D K V+V FY+P C +CK + P +++ +++ +I+
Sbjct: 6 SSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSS--AVFGRIN 63
Query: 232 ATVNELEHTK--ITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVES 276
N K + PT K + V + G+ L N V
Sbjct: 64 IATNPWTAEKYGVQGTPTFKFF-CHGRPVWEQVGQIYPSILKNAVRD 109
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein
disulfide isomerase, PIPE, dorsal-ventral patterning,
chaperone, WIND mutants; 1.75A {Drosophila melanogaster}
SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Length = 248
Score = 72.0 bits (176), Expect = 7e-15
Identities = 17/126 (13%), Positives = 40/126 (31%), Gaps = 16/126 (12%)
Query: 172 NAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEK-FADRDDITIAKI 230
L +F++ ++ + +V+F + + + D+ IA +
Sbjct: 16 TGCVDLDELSFEKT-VERFPYSVVKFDIASP--YGEKHEAFTAFSKSAHKATKDLLIATV 72
Query: 231 DATVNELEHTK---------ITSFPTLKLYAK--DDNRVIDYNGERVLEALSNFV-ESGG 278
K +FP++ L+ D+ + + + L+ L FV +
Sbjct: 73 GVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTP 132
Query: 279 KEGGLP 284
G
Sbjct: 133 LYIGRD 138
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas
reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Length = 112
Score = 68.1 bits (167), Expect = 1e-14
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 12/94 (12%)
Query: 172 NAVKVLVASNFDEI---AFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIA 228
+ + + + +D ++ K ++V+F A WCG CK +AP+++ L +A + +
Sbjct: 3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGK--VIFL 60
Query: 229 KIDATVNELEHT----KITSFPTLKLYAKDDNRV 258
K+D V+ + IT+ PT +Y KD +
Sbjct: 61 KVD--VDAVAAVAEAAGITAMPTFHVY-KDGVKA 91
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A
{Escherichia coli}
Length = 128
Score = 68.2 bits (167), Expect = 1e-14
Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 5/126 (3%)
Query: 153 AGNLKQHLLSQPLPEDWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIY 212
+ + H S +P + + L +FD +LV+F+A WCG K +API
Sbjct: 3 SSHHHHHHSSGLVPRGSHSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPIL 62
Query: 213 DKLGEKFADRDDITIAKIDATVNELEHTK--ITSFPTLKLYAKDDNRVIDYNGERVLEAL 270
D++ +++ + +T+AK++ N K I PTL L+ K+ G L
Sbjct: 63 DEIADEYQGK--LTVAKLNIDQNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQL 119
Query: 271 SNFVES 276
F+++
Sbjct: 120 KEFLDA 125
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule,
electron transport; 1.51A {Streptomyces coelicolor}
Length = 112
Score = 67.4 bits (165), Expect = 2e-14
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 172 NAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKID 231
+K + +F++ K VLV+F+A WCG C+Q+AP + + ++ D+ I I K++
Sbjct: 5 GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDK--IEIVKLN 62
Query: 232 ATVNELEHTK--ITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVES 276
N K + S PTL +Y + G + A+ +E
Sbjct: 63 IDENPGTAAKYGVMSIPTLNVY-QGGEVAKTIVGAKPKAAIVRDLED 108
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium
falciparum}
Length = 128
Score = 67.8 bits (166), Expect = 2e-14
Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 5/110 (4%)
Query: 169 WDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIA 228
+ K SN K+ +++ F+A WC C + DKL + + R I +
Sbjct: 21 FKKVPRLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKR--IYLL 78
Query: 229 KIDATVNELEHTK--ITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVES 276
K+D NE K + S PT+ L K+ + + L ++
Sbjct: 79 KVDLDKNESLARKFSVKSLPTIILL-KNKTMLARKDHFVSSNDLIALIKK 127
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola
hepatica}
Length = 104
Score = 66.9 bits (164), Expect = 3e-14
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 12/91 (13%)
Query: 174 VKVLV-ASNFDE-IAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKID 231
++VL A++ ++ I +K + ++V+F+A WCG C+ +AP + L ++ ++ AK+D
Sbjct: 1 MRVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEI---PEVEFAKVD 57
Query: 232 ATVNELEHT----KITSFPTLKLYAKDDNRV 258
V++ E +T+ PT KD V
Sbjct: 58 --VDQNEEAAAKYSVTAMPTFVFI-KDGKEV 85
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2,
protein STRU initiative; NMR {Bacteroides vulgatus}
Length = 136
Score = 67.9 bits (166), Expect = 3e-14
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 180 SNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEH 239
N +E ++ K +V+FYA WCG CK +API D+L +++ + I I K+D +
Sbjct: 28 KNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQ--IVIYKVDTEKEQELA 85
Query: 240 TK--ITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVES 276
I S P++ + + G + ++
Sbjct: 86 GAFGIRSIPSILFI-PMEGKPEMAQGAMPKASFKKAIDE 123
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm,
deoxyribonucleotide synthesis, golgi apparatus,
membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB:
3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Length = 109
Score = 66.9 bits (164), Expect = 3e-14
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 173 AVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDA 232
+ AS FD + K V+V+FYA WCG CK +AP+ +K E++ K+D
Sbjct: 8 VTQFKTASEFDSA-IAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQY---PQADFYKLD- 62
Query: 233 TVNELEHT----KITSFPTLKLYAKDDNRV 258
V+EL ++++ PTL L+ K+ V
Sbjct: 63 -VDELGDVAQKNEVSAMPTLLLF-KNGKEV 90
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 67.0 bits (164), Expect = 3e-14
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 9/95 (9%)
Query: 161 LSQPLPEDWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFA 220
+ ++ L ++ ++++FYA WCG CK + P KL + +
Sbjct: 1 MGHHHHHHSSYTSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAY- 59
Query: 221 DRDDITIAKIDATVNELEHT----KITSFPTLKLY 251
D+ K D V+E ++T+ PT L
Sbjct: 60 --PDVRFVKCD--VDESPDIAKECEVTAMPTFVLG 90
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure
initiative structural genomics of pathogenic protozoa
consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Length = 112
Score = 66.6 bits (163), Expect = 3e-14
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 11/90 (12%)
Query: 173 AVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDA 232
V + FD I +++ V+V+F+A WCG CK++AP Y++ + + + K+D
Sbjct: 10 VKIVTSQAEFDSI-ISQNELVIVDFFAEWCGPCKRIAPFYEECSKTY---TKMVFIKVD- 64
Query: 233 TVNELEHT----KITSFPTLKLYAKDDNRV 258
V+E+ ITS PT K+Y K+ + V
Sbjct: 65 -VDEVSEVTEKENITSMPTFKVY-KNGSSV 92
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 67.0 bits (164), Expect = 4e-14
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 12/111 (10%)
Query: 172 NAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKID 231
+ V V F I + + F A WCG CK + +K+ +F + AK+D
Sbjct: 20 SVVDVYSVEQFRNI-MSEDILTVAWFTAVWCGPCKTIERPMEKIAYEF---PTVKFAKVD 75
Query: 232 ATVNELEHT----KITSFPTLKLY--AKDDNRVIDYNGERVLEALSNFVES 276
+ ++ PT + K VI N + + L + ++
Sbjct: 76 --ADNNSEIVSKCRVLQLPTFIIARSGKMLGHVIGANPGMLRQKLRDIIKD 124
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport;
1.60A {Nostoc SP} SCOP: c.47.1.1
Length = 115
Score = 66.6 bits (163), Expect = 4e-14
Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Query: 172 NAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKID 231
V + + F+ + VLV F+A WCG C+ ++P+ + ++DR + + K++
Sbjct: 7 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR--LKVVKLE 64
Query: 232 ATVNELEHTK--ITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVES 276
N K + P L+L K + + G + L +F+++
Sbjct: 65 IDPNPTTVKKYKVEGVPALRLV-KGEQILDSTEGVISKDKLLSFLDT 110
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Length = 106
Score = 66.1 bits (162), Expect = 4e-14
Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 173 AVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDA 232
+V + NF++ K VLV+F+APWCG C+ +API ++L +++ + + + K++
Sbjct: 2 SVIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGK--VKVVKVNV 59
Query: 233 TVNELEHTK--ITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVES 276
N + I S PTL L+ K+ V G + EAL ++
Sbjct: 60 DENPNTAAQYGIRSIPTLLLF-KNGQVVDRLVGAQPKEALKERIDK 104
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP:
c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B*
1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B*
1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T*
2h6x_A ...
Length = 108
Score = 65.7 bits (161), Expect = 6e-14
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 172 NAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKID 231
+ + L +FD +LV+F+A WCG CK +API D++ +++ + +T+AK++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLN 59
Query: 232 ATVNELEHTK--ITSFPTLKLY 251
N K I PTL L+
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLF 81
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic
thioredoxin, oxidoreductase; NMR {Chlamydomonas
reinhardtii} SCOP: c.47.1.1
Length = 107
Score = 65.7 bits (161), Expect = 6e-14
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 173 AVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDA 232
+ F + + S VLV+F+APWCG C+ +AP+ D++ ++ D+ + K++
Sbjct: 2 EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK--LKCVKLNT 59
Query: 233 TVNELEHTK--ITSFPTLKLY 251
+ ++ I S PT+ ++
Sbjct: 60 DESPNVASEYGIRSIPTIMVF 80
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.25A {Aeropyrum pernix}
Length = 135
Score = 66.7 bits (163), Expect = 6e-14
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 11/100 (11%)
Query: 159 HLLSQPLPEDWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEK 218
+ + L D + + F ++ ++ Y+ C HC + P + ++
Sbjct: 4 SYVKEGLAVLEDGRLIYIT-PEEFRQLL---QGDAILAVYSKTCPHCHRDWPQLIQASKE 59
Query: 219 FADR-----DDITIAKIDATVNELEHTK--ITSFPTLKLY 251
I + + + LE K + PTL Y
Sbjct: 60 VDVPIVMFIWGSLIGERELSAARLEMNKAGVEGTPTLVFY 99
>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic
reticulum, glycoprotein, redox-active center; 1.92A
{Rattus norvegicus}
Length = 250
Score = 69.0 bits (168), Expect = 8e-14
Identities = 36/170 (21%), Positives = 60/170 (35%), Gaps = 19/170 (11%)
Query: 16 EDMAKYKPATPEINVDTVRSF--------VTEFLAGNLKHSKFKKNLYI--HLEEDMAKY 65
E ++ + V N K+ L + + + Y
Sbjct: 89 EPRMHVMDVQGSTEASAIKDYVVKHALPLVGHRKTSNDAKRYSKRPLVVVYYSVDFSFDY 148
Query: 66 KPASPEINVDTVRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRL 125
+ A+ R+ V E + F DEED+ ++ G+S+ I L
Sbjct: 149 RTATQFW-----RNKVLEVAKDFPEYTFAIA--DEEDYATEVKDLGLSESGGDVNAAI-L 200
Query: 126 EEDMAKYKPATPEISVDTVRSFVTEFLAGNLKQHLLSQPLPEDWDKNAVK 175
+E K+ E D +R FV F G LK + SQP+P++ +K A
Sbjct: 201 DESGKKFAMEPEEFDSDALREFVMAFKKGKLKPVIKSQPVPKN-NKGAAA 249
Score = 36.6 bits (84), Expect = 0.006
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 3 KDEVPSLRLIRLEEDMAKYKPATPEINVDTVRSFVTEFLAGNLK 46
+ + L+E K+ E + D +R FV F G LK
Sbjct: 189 SESGGDVNAAILDESGKKFAMEPEEFDSDALREFVMAFKKGKLK 232
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A
{Acetobacter aceti}
Length = 107
Score = 65.4 bits (160), Expect = 8e-14
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 180 SNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEH 239
S+FD+ S VLV+F+A WCG CK + P ++G++FA + +T+AK++ N
Sbjct: 10 SSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGK--VTVAKVNIDDNPETP 67
Query: 240 TK--ITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVES 276
+ S PTL L +D + G L +VES
Sbjct: 68 NAYQVRSIPTLMLV-RDGKVIDKKVGALPKSQLKAWVES 105
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31
protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 137
Score = 66.4 bits (162), Expect = 8e-14
Identities = 24/114 (21%), Positives = 37/114 (32%), Gaps = 11/114 (9%)
Query: 172 NAVKVLVASNFD-EIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKI 230
+K D E+ DK +VEF+A W C+ APIY L K+ + K+
Sbjct: 7 GYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNC-TGLNFGKV 65
Query: 231 DATVNE--------LEHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVES 276
D PTL L+ + + ++ S
Sbjct: 66 DVGRYTDVSTRYKVSTSPLTKQLPTLILF-QGGKEAMRRPQIDKKGRAVSWTFS 118
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A
{Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB:
1rqm_A 1quw_A 1nw2_A
Length = 105
Score = 65.4 bits (160), Expect = 8e-14
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 173 AVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDA 232
A L +NF + VLV+F+A WCG C+ +AP+ ++ E AD+ +T+AK++
Sbjct: 1 ATMTLTDANFQQA-IQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK--VTVAKLNV 57
Query: 233 TVNELEHTK--ITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVES 276
N ++ I S PTL L+ K V G + E L +
Sbjct: 58 DENPETTSQFGIMSIPTLILF-KGGRPVKQLIGYQPKEQLEAQLAD 102
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP:
c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Length = 105
Score = 65.3 bits (160), Expect = 9e-14
Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 174 VKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDAT 233
V+ + S++ E + V+V+F+APWCG CK +AP+ D+L ++++ + I + K++
Sbjct: 2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK--IAVYKLNTD 59
Query: 234 VNELEHTK--ITSFPTLKLY 251
T+ I S PT+ +
Sbjct: 60 EAPGIATQYNIRSIPTVLFF 79
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 66.8 bits (163), Expect = 9e-14
Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 12/123 (9%)
Query: 172 NAVKVLVASNFDE-IAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKI 230
+V A F+E + ++V F+APW C Q+ + +L ++ ++ K+
Sbjct: 13 AVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL---PQVSFVKL 69
Query: 231 DATVNELEHT----KITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVESGGKEGGLPSG 286
+ + +I+S PT + K+ ++ +G L+ V+ G
Sbjct: 70 E--AEGVPEVSEKYEISSVPTFLFF-KNSQKIDRLDGAHA-PELTKKVQRHASSGSFLPS 125
Query: 287 AQQ 289
A+
Sbjct: 126 AKV 128
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron
transport; 2.20A {Drosophila melanogaster} SCOP:
c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Length = 106
Score = 65.4 bits (160), Expect = 1e-13
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 173 AVKVLVASNFDE-IAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKID 231
+V ++ D + K V+++F+A WCG CK ++P +L +FAD + + K+D
Sbjct: 2 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN--VVVLKVD 59
Query: 232 ATVNELEHT----KITSFPTLKLYAKDDNRV 258
V+E E I+S PT K+ +V
Sbjct: 60 --VDECEDIAMEYNISSMPTFVFL-KNGVKV 87
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.99A {Desulfitobacterium hafniense dcb-2}
Length = 111
Score = 65.4 bits (160), Expect = 1e-13
Identities = 16/106 (15%), Positives = 43/106 (40%), Gaps = 5/106 (4%)
Query: 173 AVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDA 232
+++ L + F+++ +D+ K LV F C C+++ P+ ++L + + +D
Sbjct: 5 SLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEES--FGFYYVDV 62
Query: 233 TVNELEHTK--ITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVES 276
+ + + P + + KD G+ + + +
Sbjct: 63 EEEKTLFQRFSLKGVPQILYF-KDGEYKGKMAGDVEDDEVEQMIAD 107
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 65.4 bits (160), Expect = 1e-13
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 12/92 (13%)
Query: 172 NAVKVLVASNFDE-IAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKI 230
+++ + + + K+K V+V+F+A WCG CK +AP++ +L EK+ D K+
Sbjct: 14 ELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY----DAIFVKV 69
Query: 231 DATVNELEHT----KITSFPTLKLYAKDDNRV 258
D V++LE T I++ PT K+ +V
Sbjct: 70 D--VDKLEETARKYNISAMPTFIAI-KNGEKV 98
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 65.5 bits (160), Expect = 1e-13
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 13/92 (14%)
Query: 174 VKVLVASNFDEI---AFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKI 230
+ FD A + K V+++F A WCG C+ +AP++ + +KF K+
Sbjct: 17 IACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKF---PGAVFLKV 73
Query: 231 DATVNELEHT----KITSFPTLKLYAKDDNRV 258
D V+EL+ + + PT KD
Sbjct: 74 D--VDELKEVAEKYNVEAMPTFLFI-KDGAEA 102
>2yzu_A Thioredoxin; redox protein, electron transport, structural
genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Length = 109
Score = 65.0 bits (159), Expect = 1e-13
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 180 SNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEH 239
NFDE + VLV+F+A WC C+ +API +++ +++ + + +AK+D N
Sbjct: 9 QNFDET-LGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGK--LLVAKLDVDENPKTA 65
Query: 240 TK--ITSFPTLKLY 251
+ + S PT+ L+
Sbjct: 66 MRYRVMSIPTVILF 79
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A
{Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A
2l59_A
Length = 121
Score = 65.1 bits (159), Expect = 2e-13
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 172 NAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKID 231
+A + ++F +K VLV+F+A WCG CK +AP+ +++ + A +T+AK+D
Sbjct: 12 SATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATD--LTVAKLD 69
Query: 232 ATVNELEHTK--ITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVES 276
N + S PTL L+ KD V G + AL +
Sbjct: 70 VDTNPETARNFQVVSIPTLILF-KDGQPVKRIVGAKGKAALLRELSD 115
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 65.1 bits (159), Expect = 2e-13
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Query: 174 VKVLVASNFDEI---AFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKI 230
+ FD D K V+++F A WCG C+ +AP++ + +KF K+
Sbjct: 9 IACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKF---PGAIFLKV 65
Query: 231 DATVNELEHT----KITSFPTLKLYAKDDNRV 258
D V+EL+ + + PT KD +V
Sbjct: 66 D--VDELKDVAEAYNVEAMPTFLFI-KDGEKV 94
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure
initiative, CESG, center for eukaryotic structural
genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Length = 124
Score = 65.1 bits (159), Expect = 2e-13
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 13/92 (14%)
Query: 174 VKVLVASNFDEI---AFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKI 230
+ ++E A + V+V+F A WCG C+ +AP + L +K ++ K+
Sbjct: 19 IACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKL---PNVLFLKV 75
Query: 231 DATVNELEHT----KITSFPTLKLYAKDDNRV 258
D +EL+ I + PT K+ +
Sbjct: 76 D--TDELKSVASDWAIQAMPTFMFL-KEGKIL 104
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex,
iron-sulfur, electron transport; 1.65A {Spinacia
oleracea} PDB: 2pvo_C 1f9m_A
Length = 111
Score = 64.7 bits (158), Expect = 2e-13
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 173 AVKVLVASNFDEIAFD-KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKID 231
V + F I K V+++ + WCG K +AP Y+KL E++ D+ K+D
Sbjct: 6 KVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEY---LDVIFLKLD 62
Query: 232 ATVNELEHT----KITSFPTLKLYAKDDNRV 258
E + I PT K+ K+++ V
Sbjct: 63 CN-QENKTLAKELGIRVVPTFKIL-KENSVV 91
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative
splicing, FBP interacting repressor, RRM, electron
transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 67.2 bits (164), Expect = 2e-13
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 172 NAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKID 231
+ + L +FD +LV+F+A WCG CK +API D++ +++ + +T+AK++
Sbjct: 12 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLN 69
Query: 232 ATVNELEHTK--ITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVESGGKEGGLPS 285
N K I PTL L+ K+ G L F+++ + S
Sbjct: 70 IDQNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANLAGSAMES 124
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport;
2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 64.3 bits (157), Expect = 2e-13
Identities = 19/92 (20%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 173 AVKVLV-ASNFDE-IAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKI 230
VK + +F ++ S+ +V+F CG C ++AP + + K+ ++
Sbjct: 2 GVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKY---PQAVFLEV 58
Query: 231 DATVNELEHT----KITSFPTLKLYAKDDNRV 258
D V++ + T I++ PT + + ++ R+
Sbjct: 59 D--VHQCQGTAATNNISATPTFQFF-RNKVRI 87
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport,
redox- active center, transport, oxidoreductase; HET:
CME; 1.50A {Saccharomyces cerevisiae}
Length = 112
Score = 64.3 bits (157), Expect = 2e-13
Identities = 11/75 (14%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 181 NFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHT 240
+ K +++ F+ W CK L +++ + + ++ +++ ID +E
Sbjct: 12 TYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSN-SNVSFLSID--ADENSEI 68
Query: 241 ----KITSFPTLKLY 251
+I++ P +
Sbjct: 69 SELFEISAVPYFIII 83
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase;
1.90A {Sulfolobus solfataricus}
Length = 109
Score = 64.3 bits (157), Expect = 3e-13
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 171 KNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKI 230
++ VL NFDE+ +K VLV+ +A WC C PIY K+ EK+ + ++
Sbjct: 3 EDVTLVLTEENFDEV-IRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGK--AVFGRL 59
Query: 231 DATVNELEHTK--ITSFPTLKLY 251
+ N+ K + + PT ++
Sbjct: 60 NVDENQKIADKYSVLNIPTTLIF 82
>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo
sapiens}
Length = 252
Score = 67.4 bits (164), Expect = 3e-13
Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 7/142 (4%)
Query: 36 FVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKVLFVT 95
N + K L + + D K S + V +FL K+ F
Sbjct: 115 ICPHMTEDNKDLIQGKDLLIAYYDVDYEKNAKGSNYW-RNRVMMVAKKFLDAGHKLNFAV 173
Query: 96 INTDEEDHQKILEFFGMSKD--EVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVTEFLA 153
+ L FG+ E+P + + + + + + F+ ++
Sbjct: 174 A--SRKTFSHELSDFGLESTAGEIPVVAIRTAKGEKFVMQE-EFSRDGKALERFLQDYFD 230
Query: 154 GNLKQHLLSQPLPEDWDKNAVK 175
GNLK++L S+P+PE D A
Sbjct: 231 GNLKRYLKSEPIPESND-GAAA 251
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 64.8 bits (158), Expect = 3e-13
Identities = 19/122 (15%), Positives = 40/122 (32%), Gaps = 13/122 (10%)
Query: 172 NAVKVLVASNFDE-IAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKI 230
N ++ ++ + K K V+++ YA WC CK+ + D + +
Sbjct: 12 NFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQA 71
Query: 231 DATVNELEHT------KITSFPTLKLYAKD-----DNRVIDY-NGERVLEALSNFVESGG 278
+ T N+ + + PT+ + RV + + E L +
Sbjct: 72 NVTANDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQPHHH 131
Query: 279 KE 280
Sbjct: 132 HH 133
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP:
c.47.1.1
Length = 124
Score = 64.4 bits (157), Expect = 3e-13
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 173 AVKVLVASNFDEIAFD-KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKID 231
V + F I K V+++ + WCG CK +AP Y+KL E++ D+ K+D
Sbjct: 19 KVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL---DVIFLKLD 75
Query: 232 ATVNELEHT----KITSFPTLKLYAKDDNRV 258
E + I PT K+ K+++ V
Sbjct: 76 CN-QENKTLAKELGIRVVPTFKIL-KENSVV 104
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport,
redox-active center; 1.50A {Bacillus subtilis} PDB:
2ipa_A 2gzy_A 2gzz_A
Length = 112
Score = 63.8 bits (156), Expect = 4e-13
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 173 AVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDA 232
A+ +F + VL +F+APWCG K +AP+ ++L ++ D+ + I KID
Sbjct: 2 AIVKATDQSFSAETSEGV--VLADFWAPWCGPSKMIAPVLEELDQEMGDK--LKIVKIDV 57
Query: 233 TVNELEHTK--ITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVES 276
N+ K + S PTL + KD V G + EAL V
Sbjct: 58 DENQETAGKYGVMSIPTLLVL-KDGEVVETSVGFKPKEALQELVNK 102
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi;
structural genomics, PSI, protein structure initiative;
2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB:
2gzp_A 2jzt_A
Length = 142
Score = 64.4 bits (157), Expect = 4e-13
Identities = 17/117 (14%), Positives = 34/117 (29%), Gaps = 5/117 (4%)
Query: 163 QPLPEDWDKNAVKVLVASNFDEIAFDKSKH-VLVEFYAPWCGHCKQLAPIYDKLGEKFAD 221
L + + + AS D+ +L+ + +L +F
Sbjct: 8 SALWQRLLTRGWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQ 67
Query: 222 RDDITIAKIDATVNEL--EHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVES 276
D +A D +E + + FP ++ D +G L + S
Sbjct: 68 -FDWQVAVADLEQSEAIGDRFNVRRFPATLVF-TDGKLRGALSGIHPWAELLTLMRS 122
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase,
thioredoxin-fold, protein disulfide reductase; 1.70A
{Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Length = 122
Score = 63.9 bits (156), Expect = 5e-13
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Query: 174 VKVLVASNFDEI---AFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKI 230
+ V + A K V+++F A WCG C+ +AP++ L +KF + K+
Sbjct: 15 ISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKF---PNAVFLKV 71
Query: 231 DATVNELEHT----KITSFPTLKLYAKDDNRV 258
D V+EL+ + + PT K+ +
Sbjct: 72 D--VDELKPIAEQFSVEAMPTFLFM-KEGDVK 100
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A*
1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 63.1 bits (154), Expect = 6e-13
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 179 ASNFDE-IAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL 237
+ F E + K V+V+F A WCG CK + P + L EK+ ++ ++D V++
Sbjct: 8 KTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKY---SNVIFLEVD--VDDC 62
Query: 238 EHT----KITSFPTLKLYAKDDNRVIDYNG 263
+ ++ S PT + + K +V +++G
Sbjct: 63 QDVASESEVKSMPTFQFF-KKGQKVGEFSG 91
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis}
PDB: 3hyp_A
Length = 141
Score = 64.1 bits (156), Expect = 6e-13
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 180 SNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEH 239
++ E + K +V+FYA WCG CK +API ++L +++A + I I K++
Sbjct: 41 NHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGK--IYIYKVNVDKEPELA 98
Query: 240 TK--ITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVES 276
I S PT+ G E L +++
Sbjct: 99 RDFGIQSIPTIWFV-PMKGEPQVNMGALSKEQLKGYIDK 136
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP:
c.47.1.1
Length = 113
Score = 63.1 bits (154), Expect = 6e-13
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 11/83 (13%)
Query: 180 SNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEH 239
+F++ K ++V+F A WC CK +API+ +L +KF ++T K+D V+EL+
Sbjct: 17 EHFEK-GKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKF---PNVTFLKVD--VDELKA 70
Query: 240 T----KITSFPTLKLYAKDDNRV 258
+ + PT KD V
Sbjct: 71 VAEEWNVEAMPTFIFL-KDGKLV 92
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 63.1 bits (154), Expect = 9e-13
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 179 ASNFDE-IAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL 237
+ F E + K V+V+F A WCG K + P + L EK+ ++ ++D V++
Sbjct: 19 KTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKY---SNVIFLEVD--VDDC 73
Query: 238 EHT----KITSFPTLKLYAKDDNRV 258
+ ++ S PT + + K +V
Sbjct: 74 QDVASECEVKSMPTFQFF-KKGQKV 97
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB:
3hhv_A
Length = 104
Score = 62.3 bits (152), Expect = 9e-13
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 174 VKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDAT 233
V L + NFD + +V+F+A WC C LAPI ++L E + + K+++
Sbjct: 1 VIHLDSKNFDSF-LASHEIAVVDFWAEWCAPCLILAPIIEELAEDY---PQVGFGKLNSD 56
Query: 234 VNELEHTK--ITSFPTLKLY 251
N + + S PT+ +
Sbjct: 57 ENPDIAARYGVMSLPTVIFF 76
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
2.90A {Bacillus cereus}
Length = 105
Score = 62.3 bits (152), Expect = 1e-12
Identities = 14/97 (14%), Positives = 36/97 (37%), Gaps = 7/97 (7%)
Query: 181 NFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVN-EL-E 238
++ + VL+ CG C + + + E + + + +I E+
Sbjct: 10 ELATY-IEEQQLVLLFIKTENCGVCDVMLRKVNYVLENY---NYVEKIEILLQDMQEIAG 65
Query: 239 HTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVE 275
+ + PT+ L+ + ++ + LE L ++
Sbjct: 66 RYAVFTGPTVLLF-YNGKEILRESRFISLENLERTIQ 101
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox
enzymology, oxidoreductase, redox-active center,
transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A
2o85_A 2o89_A 2o87_A
Length = 106
Score = 62.0 bits (151), Expect = 2e-12
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 173 AVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDA 232
A+ + ++FD +S LV+F+A CG CK +AP+ ++L + + I K+D
Sbjct: 4 AIVKVTDADFDSKV--ESGVQLVDFWATACGPCKMIAPVLEELAADYEGK--ADILKLDV 59
Query: 233 TVNELEHTK--ITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVES 276
N K + S PTL ++ KD V G + E L+ ++
Sbjct: 60 DENPSTAAKYEVMSIPTLIVF-KDGQPVDKVVGFQPKENLAEVLDK 104
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2,
protein structure initiative; NMR {Bacteroides
thetaiotaomicron}
Length = 130
Score = 62.5 bits (152), Expect = 2e-12
Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 16/114 (14%)
Query: 180 SNFDEI---AFDKSKHVLVEFYAPWCGHCKQLAPI--YDKLGEKFADRDDITIAKIDATV 234
+F E A + K + V+ + WCG CK+L+ + D L + + K+D
Sbjct: 14 LSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFN-RHFVNLKMDMEK 72
Query: 235 NELEHT----KITSFPTLKLYAKDDNRVID-----YNGERVLEALSNFVESGGK 279
E + ++PTL L+ V+ + +L+ + VES G
Sbjct: 73 GEGVELRKKYGVHAYPTL-LFINSSGEVVYRLVGAEDAPELLKKVKLGVESEGH 125
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project protein structural and
functional analyses; 2.30A {Aquifex aeolicus} PDB:
2ayt_A
Length = 229
Score = 64.3 bits (156), Expect = 2e-12
Identities = 16/120 (13%), Positives = 36/120 (30%), Gaps = 6/120 (5%)
Query: 184 EIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFAD---RDDITIAKIDATVNELEHT 240
+ F + + + A C C+ + + E + +D I + ++ E
Sbjct: 16 QKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETE 75
Query: 241 K--ITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVESGGKEGGLPSGAQQGKFRLVYSL 298
K + PT+ + D I Y G + + + L+ +
Sbjct: 76 KYGVDRVPTIVIEGDKDYG-IRYIGLPAGLEFTTLINGIFHVSQRKPQLSEKTLELLQVV 134
Score = 58.5 bits (141), Expect = 3e-10
Identities = 30/224 (13%), Positives = 64/224 (28%), Gaps = 25/224 (11%)
Query: 75 DTVRSFVTEFLAGNLK---VLFVTINTDEEDHQKIL-----EFFGMSKDEVPSLRLIRLE 126
VR + E K + + + + E + + V ++
Sbjct: 5 LDVRMQLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDI 64
Query: 127 EDMAKYKPATPEISVDTVRSFV--------TEFLAGNLKQHLLSQPLPEDWDKNAVKVLV 178
+K T + VD V + V ++ + L
Sbjct: 65 YSPFTHKEETEKYGVDRVPTIVIEGDKDYGIRYIGLPAGLEFTTLINGIFHVSQRKPQLS 124
Query: 179 ASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVN--E 236
+ + + F CG+C A + D IT IDA+ N
Sbjct: 125 EKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALA---NDYITSKVIDASENQDL 181
Query: 237 LEHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVESGGKE 280
E ++ P + + + V ++ G + A ++ + ++
Sbjct: 182 AEQFQVVGVPKIVI----NKGVAEFVGAQPENAFLGYIMAVYEK 221
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC
structure funded by NIH, protein structure initiative,
PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Length = 85
Score = 60.8 bits (148), Expect = 3e-12
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 190 SKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTK--ITSFPT 247
SK + F +P C HC + +++ + D + + I+ N + + I + PT
Sbjct: 2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDA--VEVEYINVMENPQKAMEYGIMAVPT 59
Query: 248 LKLY 251
+ +
Sbjct: 60 IVIN 63
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase,
structural genomics consortium, SGC; 2.00A {Plasmodium
falciparum}
Length = 133
Score = 62.1 bits (151), Expect = 3e-12
Identities = 13/83 (15%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 174 VKVLVASNFDE-IAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDA 232
+++ + ++ + ++ ++++F A WC C ++ + + +T+ ID
Sbjct: 23 IELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY----YVTLVDID- 77
Query: 233 TVNELEHT----KITSFPTLKLY 251
V+ I + PT + Y
Sbjct: 78 -VDIHPKLNDQHNIKALPTFEFY 99
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 61.7 bits (150), Expect = 4e-12
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 179 ASNFDEI---AFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVN 235
+D+ A K VL F A WCG +Q+AP Y +L E + + ID V+
Sbjct: 32 KERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENY---PSLMFLVID--VD 86
Query: 236 ELEHT----KITSFPTLKLYAKDDNRV 258
EL +I + PT +D +V
Sbjct: 87 ELSDFSASWEIKATPTFFFL-RDGQQV 112
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 60.6 bits (147), Expect = 4e-11
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 10/101 (9%)
Query: 180 SNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDD--ITIAKIDATVNE- 236
FD V FY+P C HC LAP + +FA D + I ++ +
Sbjct: 105 REFDAAVNSGELW-FVNFYSPGCSHCHDLAPTW----REFAKEVDGLLRIGAVNCGDDRM 159
Query: 237 -LEHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVES 276
+ S+P+L ++ + + YNG+R E+L F
Sbjct: 160 LCRMKGVNSYPSLFIF-RSGMAAVKYNGDRSKESLVAFAMQ 199
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 61.0 bits (148), Expect = 6e-11
Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 179 ASNFDEIAFDKSKH--VLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE 236
SN ++ ++S VL F++ HC QL PI + L ++ + +AK+D +
Sbjct: 14 ESNLQQVL-EQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQ--FILAKLDCDAEQ 70
Query: 237 --LEHTKITSFPTLKLYAKDDNRVID-YNGERVLEALSNFVE 275
+ + PT+ L+ + + +D + G + EA+ ++
Sbjct: 71 MIAAQFGLRAIPTVYLFQ--NGQPVDGFQGPQPEEAIRALLD 110
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy,
IGE, conformational diversity, multispecficity,
redox-active center; 2.77A {Escherichia coli} SCOP:
c.47.1.1
Length = 123
Score = 57.9 bits (140), Expect = 6e-11
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 172 NAVKVLVASNFDEIAFDKSKHVLVEFYAPWCG--------------HCKQLAPIYDKLGE 217
+ + L +FD +LV+F+A WCG CK +API D++ +
Sbjct: 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIAD 62
Query: 218 KFADRDDITIAKIDATVNELEHTK--ITSFPTLKLY 251
++ + +T+AK++ N K I PTL L+
Sbjct: 63 EYQGK--LTVAKLNIDQNPGTAPKYGIRGIPTLLLF 96
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 57.4 bits (138), Expect = 3e-10
Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 3/96 (3%)
Query: 184 EIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHT--- 240
+ A ++V + WCG CK L P + + E + + ++ +
Sbjct: 40 KEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSP 99
Query: 241 KITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVES 276
P + + E + F S
Sbjct: 100 DGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVS 135
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.47.1.1
Length = 85
Score = 55.0 bits (133), Expect = 3e-10
Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Query: 193 VLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTK--ITSFPTLKL 250
+ F +P C +C + D+ ++F D+ I + KID V+ + + + + P + +
Sbjct: 4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDK--IDVEKIDIMVDREKAIEYGLMAVPAIAI 61
Query: 251 YAKDDNRVIDYNGERVLEALSNFVES 276
N V+ + G E L +
Sbjct: 62 -----NGVVRFVGAPSREELFEAIND 82
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens}
PDB: 1xbs_A
Length = 149
Score = 56.1 bits (135), Expect = 6e-10
Identities = 14/101 (13%), Positives = 29/101 (28%), Gaps = 6/101 (5%)
Query: 179 ASNFDE-IAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNE- 236
D+ I K +++ F C QL I K + I +D
Sbjct: 11 KKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKM--AAIYLVDVDQTAV 68
Query: 237 -LEHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVES 276
++ I+ P+ + + + G ++
Sbjct: 69 YTQYFDISYIPSTVFF-FNGQHMKVDYGSPDHTKFVGSFKT 108
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A
{Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB:
1j08_A
Length = 226
Score = 56.3 bits (135), Expect = 1e-09
Identities = 23/204 (11%), Positives = 63/204 (30%), Gaps = 25/204 (12%)
Query: 77 VRSFVTEFLAGNLKVLFVTINTDEEDHQKILEFFGMSKDEVPSLRLIRLEEDMAKYKPAT 136
++ V E K+ + ++ D + +++ + + + + P+ + + +D
Sbjct: 41 LKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDR--APATTITQDGKDFGVRYFGL 98
Query: 137 PEISVDTVRSFVTEFLAGNLKQHLLSQPLPEDWDKNAVKVLVASNFDEIAFDKSKHVLVE 196
P F FL + L ++ I ++
Sbjct: 99 PAG-----HEF-AAFLEDIVDVSREETNLMDE------------TKQAIRNIDQDVRILV 140
Query: 197 FYAPWCGHCKQLAPIYDKLGEKF--ADRDDITIAKIDATVN--ELEHTKITSFPTLKLYA 252
F P C +C + K + A + I ++A + + + P + +
Sbjct: 141 FVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQ- 199
Query: 253 KDDNRVIDYNGERVLEALSNFVES 276
+ +++ G + + S
Sbjct: 200 VNGEDRVEFEGAYPEKMFLEKLLS 223
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 54.1 bits (130), Expect = 2e-09
Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 6/80 (7%)
Query: 174 VKVLVASNFDEIAFDKSKH--VLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKID 231
++ + + + + K V++ Y C + L KF + K
Sbjct: 12 LREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP---ETKFVKAI 68
Query: 232 ATVNELEHTKITSFPTLKLY 251
+ +EH PT+ +Y
Sbjct: 69 VN-SCIEHYHDNCLPTIFVY 87
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 52.8 bits (127), Expect = 4e-09
Identities = 11/80 (13%), Positives = 27/80 (33%), Gaps = 6/80 (7%)
Query: 174 VKVLVASNFDEIAFDKSKH--VLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKID 231
++ + + + + + V++ Y C + L KF + K
Sbjct: 5 LREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP---ETKFVKAI 61
Query: 232 ATVNELEHTKITSFPTLKLY 251
+ ++H PT+ +Y
Sbjct: 62 VN-SCIQHYHDNCLPTIFVY 80
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.4 bits (125), Expect = 1e-07
Identities = 42/279 (15%), Positives = 88/279 (31%), Gaps = 95/279 (34%)
Query: 75 DTVRSFVTEFLAGNLKVLF----------------VTINTDEEDHQK-----ILEFFGMS 113
D+ SF + VLF +I D ++ + +L ++
Sbjct: 287 DSWESFFVSVRKA-ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT 345
Query: 114 KDEVPSLRLIRLEEDMAKYKPATPEIS---VDTVRSFVTEFLAGN------LKQHLLSQP 164
+++V + + PA ++ V+ ++ V ++G L L
Sbjct: 346 QEQV--QDYV---NKTNSHLPAGKQVEISLVNGAKNLV---VSGPPQSLYGLNLTLRKAK 397
Query: 165 LPEDWDKNAV-----KVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKF 219
P D++ + K+ ++ F +A +P+ H L P D + +
Sbjct: 398 APSGLDQSRIPFSERKLKFSNRFLPVA------------SPF--HSHLLVPASDLINK-- 441
Query: 220 ADRDDITIAKIDATVNELEHTKITSFPTLKLYAKD--DNRVIDYNGERVL---------- 267
D+ + ++ +I + T D D RV+ + +
Sbjct: 442 ----DLVKNNVSFNAKDI---QIPVYDT-----FDGSDLRVLSGSISERIVDCIIRLPVK 489
Query: 268 -EALSNFVES-------GGKEG--GLPSGAQQGK-FRLV 295
E + F + GG G L + G R++
Sbjct: 490 WETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVI 528
Score = 38.9 bits (90), Expect = 0.002
Identities = 48/366 (13%), Positives = 96/366 (26%), Gaps = 154/366 (42%)
Query: 33 VRSFVTEFLAGNLKHSKFKKNLYIHLEEDMAKYKPASPEINVDTVRSFVTEFLAGNLKV- 91
+ F +L GN H+ L L ++ + E+ +++++T +
Sbjct: 88 LTEFENCYLEGNDIHA-----LAAKLLQENDTTLVKTKEL----IKNYITARIMAKRPFD 138
Query: 92 ------LFVTINTDEEDHQKILEFF---GMSKDEVPSLRLIRLEEDMAKYKPATPEISVD 142
LF E + +++ F G + D LR + Y
Sbjct: 139 KKSNSALF---RAVGEGNAQLVAIFGGQGNTDDYFEELRDL--------Y---------Q 178
Query: 143 TVRSFVTEFL--AGNLKQHLLSQPLPED-----------WDKNAVKV------------- 176
T V + + + L+ L + W +N
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 177 -----------LVASN---------FDEI--AFDKSKHVLV-----------EFYAP--- 200
+V + + A S+ ++ F+
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK 298
Query: 201 ------WCG-HCKQLAPIYD---KLGEKFADRD-----------DITIAKIDATVNELEH 239
+ G C + P + E + + ++T ++ VN+
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN- 357
Query: 240 TKITSFPTLKLYAKDDNRVID---YNGERVLEALSNFVESG------GKEGGL-----PS 285
+ P + ++ NG + N V SG G L PS
Sbjct: 358 ---SHLPA--------GKQVEISLVNGAK------NLVVSGPPQSLYGLNLTLRKAKAPS 400
Query: 286 GAQQGK 291
G Q +
Sbjct: 401 GLDQSR 406
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul
structural genomics, PSI-2, protein structure
initiative; 1.30A {Xylella fastidiosa}
Length = 133
Score = 46.8 bits (111), Expect = 7e-07
Identities = 18/133 (13%), Positives = 32/133 (24%), Gaps = 19/133 (14%)
Query: 162 SQPLPEDWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFAD 221
S L +D++A K L+ F A WC C+ L
Sbjct: 1 SNALNLPYDEHADAWTQVKKALAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALI 60
Query: 222 RDDITIAKIDATVNE--------LEHTKITSFPTLKLYAKDDNRVI-----------DYN 262
+ KID + P + + D +
Sbjct: 61 AKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKVRYTTKGGELANARKMS 120
Query: 263 GERVLEALSNFVE 275
+ + + + E
Sbjct: 121 DQGIYDFFAKITE 133
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide
formation, redox partner, oxidoreductase; 1.66A
{Synechococcus SP}
Length = 106
Score = 45.1 bits (106), Expect = 2e-06
Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 10/110 (9%)
Query: 183 DEIAFDK--SKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL-EH 239
+ + + A WC HC+ ++ ++ + + +
Sbjct: 3 LAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQV-PYVECSPNGPGTPQAQECTE 61
Query: 240 TKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVESGGKEGGLPSGAQQ 289
ITS+PT + + Y G R LEAL+ +EG L
Sbjct: 62 AGITSYPTWII---NGRT---YTGVRSLEALAVASGYPLEEGRLEHHHHH 105
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics
research consortium, oxidoreductase; NMR {Thermus
thermophilus}
Length = 130
Score = 44.3 bits (105), Expect = 5e-06
Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 24/116 (20%)
Query: 184 EIAFDKSKHVLVEFYAPWCGHCKQL-------APIYDKLGEKFADRDDITIAKIDATVNE 236
+A + V+V F++ C +C+Q+ + L +F +A + E
Sbjct: 13 ALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARF------VVASVSVDTPE 66
Query: 237 ----LEHTKITSFPTLKLYAKDDN------RVIDY-NGERVLEALSNFVESGGKEG 281
++ PT R+ L+ L GG G
Sbjct: 67 GQELARRYRVPGTPTFVFLVPKAGAWEEVGRLFGSRPRAEFLKELRQVCVKGGACG 122
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga
hutchinsoni structural genomics, PSI-2, protein
structure initiative; 1.88A {Cytophaga hutchinsonii}
Length = 148
Score = 44.6 bits (106), Expect = 6e-06
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRD 223
++K+ ++ F+ CGHC+Q P K +
Sbjct: 30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKG 64
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP:
c.47.1.1
Length = 118
Score = 43.0 bits (101), Expect = 1e-05
Identities = 14/114 (12%), Positives = 31/114 (27%), Gaps = 15/114 (13%)
Query: 171 KNAVKVLVASNFDEI--AFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIA 228
+ +K L + A DK + C +C++ A I
Sbjct: 8 LDNIKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTL----SGVVAETKAHIY 63
Query: 229 KIDATVNE--------LEHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFV 274
I++ I + P ++ D + + + + +F
Sbjct: 64 FINSEEPSQLNDLQAFRSRYGIPTVPGF-VHITDGQINVRCDSSMSAQEIKDFA 116
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 2e-05
Identities = 52/388 (13%), Positives = 111/388 (28%), Gaps = 130/388 (33%)
Query: 1 MSKDEVPSLRLIRLEEDMAKYKP---------ATPEINVDTVRSFVTEFLAGNLKHSKFK 51
+ P L L++ + + P + ++ + ++++ + L K ++
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL----KSKPYE 244
Query: 52 KNLYIHLEEDMAKYKPASPEINVDTVRSF--------------VTEFLAGNLKVLFVTIN 97
L + L ++ N +F VT+FL+ +
Sbjct: 245 NCLLV-LL-NVQ---------NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 98 -----TDEEDHQKILEFFGMSKDEVPS---------LRLI--RLEEDMAKYKPATPEISV 141
T +E +L++ ++P L +I + + +A + ++
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN-WKHVNC 352
Query: 142 DTVRSFVTEFLAGNLKQHLLSQP------LPED-----------W------------DKN 172
D + + + L L+ + P W +K
Sbjct: 353 DKLTTIIESSLN-VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 173 AVKVLVASNFDE-------IAFDKSKHV---------LVEFYAPWCGHCKQ-LAP----- 210
LV E I + + +V+ Y L P
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 211 -IYDKLG---------EKFADRDDITI------AKI--DATVNELEHTKITSFPTLKLYA 252
Y +G E+ + + KI D+T + + + LK Y
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 253 K--DDNRVIDYNGERVLEALSNFVESGG 278
DN D ER++ A+ +F+
Sbjct: 532 PYICDN---DPKYERLVNAILDFLPKIE 556
Score = 36.0 bits (82), Expect = 0.018
Identities = 48/344 (13%), Positives = 97/344 (28%), Gaps = 110/344 (31%)
Query: 2 SKDEVPSLRLI-RLEEDMAKYKPATPEINV-------------DTVRSF-VTEFLAGN-- 44
+K V L+ +L + + + +PA + + D S+ V +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPA-KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 45 -LKHSKFKK---------NLYIHLEEDMAKY--KPASPEINVDTVRSFVTEFLAGNLKVL 92
L L ++ + ++ ++ + ++++ + L
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK------ 239
Query: 93 FVTINTDEEDHQK---ILEFFGMSKDEVPSLRLIRLEEDMAKYKPATPEISVDTVRSFVT 149
+ ++ +L V + + K I + T VT
Sbjct: 240 -------SKPYENCLLVL-------LNVQNAKAWNAFNLSCK-------ILLTTRFKQVT 278
Query: 150 EFLAGNLKQHLLSQPLPEDWDKNAVKVLVASNFDEIAFD-----KSKHVLV--------- 195
+FL+ H+ + VK L+ D D + +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338
Query: 196 EFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL----------------EH 239
+ A W + K + DKL I++++N L
Sbjct: 339 DGLATW-DNWKHVN--CDKLTT-----------IIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 240 TKITSFPTLKLYAKDDNRVIDYNGERVLEALSNF--VESGGKEG 281
I + L L D VI + V+ L + VE KE
Sbjct: 385 AHIPT-ILLSLIWFD---VIKSDVMVVVNKLHKYSLVEKQPKES 424
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB:
1b9y_C 1b9x_C
Length = 245
Score = 43.9 bits (103), Expect = 2e-05
Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 188 DKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL-EHTKITSFP 246
K ++V Y C L L ++ + KI A+ + P
Sbjct: 131 QKITTIVVHIYEDGIKGCDALNSSLICLAAEYP---MVKFCKIKASNTGAGDRFSSDVLP 187
Query: 247 TLKLY 251
TL +Y
Sbjct: 188 TLLVY 192
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation,
blood coagulation, oxidoreduc blood
coagulation,oxidoreductase; HET: U10; 3.60A
{Synechococcus SP}
Length = 291
Score = 43.9 bits (102), Expect = 3e-05
Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 17/97 (17%)
Query: 194 LVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL-EHTKITSFPTLKLYA 252
+ A WC HC+ ++ ++ + + + ITS+PT +
Sbjct: 201 GTMYGAYWCPHCQDQKELFGAAFDQVPYV-ECSPNGPGTPQAQECTEAGITSYPTWIING 259
Query: 253 KDDNRVIDYNGERVLEALS---------NFVESGGKE 280
+ Y G R LEAL+ +E
Sbjct: 260 R------TYTGVRSLEALAVASGYPLEEGRLEHHHHH 290
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold,
structural genomics, PSI-2, protein structu initiative;
2.00A {Bacteroides fragilis}
Length = 142
Score = 41.9 bits (99), Expect = 3e-05
Identities = 7/38 (18%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLG---EKFADRD 223
K+++ ++ FY P C +C++ ++ ++ E +
Sbjct: 26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGT 63
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia
fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A
1oc9_B 1fg4_A 1oc9_A
Length = 144
Score = 42.0 bits (99), Expect = 4e-05
Identities = 15/101 (14%), Positives = 25/101 (24%), Gaps = 26/101 (25%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTK------- 241
K V F A WC + P + A++ + + I + +
Sbjct: 27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPW 86
Query: 242 -------------------ITSFPTLKLYAKDDNRVIDYNG 263
+ S PTL D +I
Sbjct: 87 LALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQA 127
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural
genomics, joint center F structural genomics, JCSG;
2.02A {Parabacteroides distasonis}
Length = 143
Score = 41.2 bits (97), Expect = 6e-05
Identities = 10/69 (14%), Positives = 18/69 (26%), Gaps = 8/69 (11%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRD--------DITIAKIDATVNELEHT 240
++ L+ F+A + + KF D + TV +
Sbjct: 31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLD 90
Query: 241 KITSFPTLK 249
T F
Sbjct: 91 LSTQFHEGL 99
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2,
structure initiative, midwest center for structural
genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Length = 148
Score = 41.1 bits (97), Expect = 7e-05
Identities = 6/39 (15%), Positives = 20/39 (51%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITI 227
+++++L+ F+A WC + +L +++ + +
Sbjct: 32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAM 70
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural
genomics, protein S initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Bacteroides
fragilis}
Length = 142
Score = 40.4 bits (95), Expect = 1e-04
Identities = 5/38 (13%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPI---YDKLGEKFADRD 223
+++ L+ P C C ++ + A +
Sbjct: 30 PAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKK 67
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron
transport; 1.80A {Leishmania major}
Length = 165
Score = 41.0 bits (96), Expect = 1e-04
Identities = 18/101 (17%), Positives = 26/101 (25%), Gaps = 26/101 (25%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITI---------AKIDATVNELEH 239
K V F A WC C+ P + EK D + I +A ++
Sbjct: 47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPW 106
Query: 240 T-----------------KITSFPTLKLYAKDDNRVIDYNG 263
+ S PTL D +
Sbjct: 107 LSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRA 147
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin;
2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Length = 144
Score = 39.6 bits (93), Expect = 2e-04
Identities = 16/101 (15%), Positives = 27/101 (26%), Gaps = 26/101 (25%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITI---------AKIDATVNELEH 239
K V + F A WC C+ P+ + EK + + + ++
Sbjct: 27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPW 86
Query: 240 T-----------------KITSFPTLKLYAKDDNRVIDYNG 263
+ S PTL D +I
Sbjct: 87 LALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQA 127
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation,
disulfide bonds tryparedoxin, thioredoxin, trypanosome;
1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A
1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Length = 146
Score = 39.7 bits (93), Expect = 2e-04
Identities = 16/101 (15%), Positives = 24/101 (23%), Gaps = 26/101 (25%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTK------- 241
K V F A WC + P + +KF + + + E
Sbjct: 27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPW 86
Query: 242 -------------------ITSFPTLKLYAKDDNRVIDYNG 263
+ S PTL D V+
Sbjct: 87 LAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRA 127
>2lrn_A Thiol:disulfide interchange protein; structural genomics,
thioredoxin-like, NEW YORK structural G research
consortium, oxidoreductase; NMR {Bacteroides SP}
Length = 152
Score = 39.2 bits (92), Expect = 3e-04
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRD 223
K K+VLV+F+ C C++ P K F D+
Sbjct: 28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKG 62
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW
YORK structural G research consortium, nysgrc,
PSI-biology; NMR {Bacteroides vulgatus}
Length = 152
Score = 38.5 bits (90), Expect = 6e-04
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRD 223
K K VL++F +L K+A +
Sbjct: 34 KGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQG 68
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Length = 217
Score = 39.2 bits (91), Expect = 7e-04
Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 14/94 (14%)
Query: 188 DKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNEL-EHTKITSFP 246
K ++V Y C L + L ++ + KI A+ + P
Sbjct: 118 QKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP---MVKFCKIRASNTGAGDRFSSDVLP 174
Query: 247 TLKLYAKDDNRVIDYNGERVLEALSNFVESGGKE 280
TL +Y GE ++ + E ++
Sbjct: 175 TLLVY---------KGGE-LISNFISVAEQFAED 198
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP:
c.47.1.10 PDB: 3ios_A
Length = 136
Score = 38.0 bits (89), Expect = 7e-04
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 191 KHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKID---ATVNELEHTKITSFPT 247
K ++ F+APWC C+ AP+ ++ + + +A +D A + + +F
Sbjct: 26 KPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQ 85
Query: 248 L 248
L
Sbjct: 86 L 86
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like
fold, RESA-like fold, dithiol, STOA, redox-active
center; 2.50A {Bacillus subtilis}
Length = 145
Score = 38.1 bits (89), Expect = 8e-04
Identities = 10/58 (17%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 188 DKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSF 245
+K + ++ F+ WC CK+ P + + D + + ++ +E + F
Sbjct: 32 NKGQKTILHFWTSWCPPCKKELPQFQSFYDAHPS-DSVKLVTVNLVNSEQNQQVVEDF 88
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein
disulfide isomerase, endoplasmic R isomerase; 1.83A
{Homo sapiens}
Length = 151
Score = 38.1 bits (88), Expect = 9e-04
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 184 EIAFDKSKHVLVEFYAPWCGHCKQLAP 210
A K ++V + C + + L
Sbjct: 38 FYAQKSKKPLMVIHHLEDCQYSQALKK 64
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase,
sulfur oxidation, thiol- disulfide oxidoreductase; HET:
MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Length = 116
Score = 37.3 bits (86), Expect = 0.001
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 6/90 (6%)
Query: 181 NFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEH- 239
+ DK++ L+ F P C +C + + + ++
Sbjct: 9 HHGSDDDDKAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGL 68
Query: 240 ---TKITSFPTLKLYAKDD--NRVIDYNGE 264
+T PT L A D R+ Y GE
Sbjct: 69 ELARPVTFTPTFVLMAGDVESGRLEGYPGE 98
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB;
reduced, thiol-disulfide exchange, oxidoreductase; 1.60A
{Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Length = 164
Score = 38.2 bits (89), Expect = 0.001
Identities = 12/70 (17%), Positives = 18/70 (25%), Gaps = 10/70 (14%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIA----------KIDATVNELE 238
K K L++F+A WC C +K + I K
Sbjct: 37 KDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYA 96
Query: 239 HTKITSFPTL 248
P +
Sbjct: 97 GLNYPKLPVV 106
>4evm_A Thioredoxin family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.51A
{Streptococcus pneumoniae}
Length = 138
Score = 37.6 bits (88), Expect = 0.001
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 9/70 (12%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADR---------DDITIAKIDATVNELEH 239
K K V ++F+A WC C P D++ ++ D N +
Sbjct: 21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKG 80
Query: 240 TKITSFPTLK 249
+ P L
Sbjct: 81 LDYKNLPVLV 90
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G
midwest center for structural genomics, protein
structure initiative; 1.70A {Aeropyrum pernix}
Length = 165
Score = 37.9 bits (88), Expect = 0.001
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIA 228
V++ F A WC C +A + D+L EK+ + I I
Sbjct: 36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAID 75
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2,
protein struct initiative; NMR {Neisseria meningitidis
serogroup B}
Length = 153
Score = 37.3 bits (87), Expect = 0.002
Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIA------KIDATVNELEHTKI 242
+ K L+ F+ P C C P K + +++ +A I++ ++ +
Sbjct: 27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGL 86
Query: 243 TSFPTL 248
F +
Sbjct: 87 P-FTVM 91
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB
struct genomics consortium, TBSGC, unknown function;
1.90A {Mycobacterium tuberculosis}
Length = 352
Score = 38.4 bits (89), Expect = 0.002
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIA-KIDATVNELEHTKITSF 245
+ K VL++F+A C +C++ P + + D I E +
Sbjct: 81 RGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKG 138
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics,
unknown function, thioredoxin-like; NMR {Bacteroides
vulgatus}
Length = 152
Score = 37.3 bits (87), Expect = 0.002
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITI------AKIDATVNELEHTKI 242
K K++ ++ +A WCG C+ P +L EK+A DI A N + ++
Sbjct: 29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAG-KDIHFVSLSCDKNKKAWENMVTKDQL 87
Query: 243 TSFPTLK 249
Sbjct: 88 KGIQLHM 94
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase,
PSI-II, structural genomics, protein structure
initiative; 2.09A {Chlorobium tepidum tls}
Length = 152
Score = 36.9 bits (86), Expect = 0.002
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRD 223
V ++F+A WCG C+Q P +++ K+ +
Sbjct: 27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKG 61
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET:
MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB:
1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A
3c73_A
Length = 151
Score = 36.5 bits (85), Expect = 0.003
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 191 KHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRD 223
K V + F+ WC CK+ P + F +
Sbjct: 27 KGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG 59
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1,
thiol-disulfide oxidoreduct TLPA-like family, PSI-2;
1.74A {Bacteroides thetaiotaomicron}
Length = 150
Score = 36.2 bits (84), Expect = 0.004
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 189 KSKHVLVEFYAPWCGHCKQLA--PIYDKLGEKFADRDDITI 227
K K +L+ F+A W Q ++ +K+ I +
Sbjct: 32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGM 72
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus
subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Length = 148
Score = 36.1 bits (84), Expect = 0.004
Identities = 12/57 (21%), Positives = 28/57 (49%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSF 245
K L+ F++ C CK+ P ++ +K+ D+ ++ + + ++L+ KI
Sbjct: 28 GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKET 84
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural
genomics, PSI-2, protein structure initiative; 1.77A
{Geobacter metallireducens gs-15}
Length = 158
Score = 36.2 bits (84), Expect = 0.004
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRD 223
+ K VLV F+A WC +C+ P D+L + F D
Sbjct: 40 RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGD 74
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI,
structural genomics, protein initiative; 2.45A
{Geobacter metallireducens gs-15}
Length = 154
Score = 36.1 bits (84), Expect = 0.005
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRD 223
K + V+V F+A WC C++ P +L A +
Sbjct: 27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKP 61
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius
rotundicauda}
Length = 143
Score = 35.5 bits (82), Expect = 0.007
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 186 AFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADR 222
A + F A WC C+ PI + + D
Sbjct: 22 ALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDD 58
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
2.35A {Bordetella parapertussis}
Length = 195
Score = 35.8 bits (82), Expect = 0.009
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 188 DKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADR 222
K ++EF+A C HC + P+ + +
Sbjct: 23 TPGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQD 57
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein
structure initiative; 2.00A {Neisseria meningitidis
serogroup B}
Length = 151
Score = 35.1 bits (81), Expect = 0.009
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRD 223
K+ +V +A WCG C++ P K +
Sbjct: 23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGS 57
>1bed_A DSBA oxidoreductase; TCPG, protein disulfide isomerase, disulfide
oxidoreductase; 2.00A {Vibrio cholerae} SCOP: c.47.1.13
PDB: 2ijy_A
Length = 181
Score = 35.5 bits (81), Expect = 0.009
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADR 222
S V+ EF++ +C HC PI +L ++ +
Sbjct: 17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEG 50
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD,
structural genomics, protein structure initiative; 1.80A
{Rhodopseudomonas palustris}
Length = 137
Score = 35.0 bits (80), Expect = 0.009
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 7/96 (7%)
Query: 161 LSQPL-PEDWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPW--CGHCKQLAPIYDKLGE 217
+S L NA ++ + D+ K V++ F LA + +L
Sbjct: 3 MSGSLARAAARPNAPTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELIN 62
Query: 218 KFADRDDITIAKIDATVNE--LEHTKITSFPTLKLY 251
F R + A++ A + + P+L +
Sbjct: 63 AFPGR--LVAAEVAAEAERGLMARFGVAVCPSLAVV 96
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A
{Aeropyrum pernix}
Length = 243
Score = 36.0 bits (82), Expect = 0.010
Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 9/106 (8%)
Query: 179 ASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADR--DDITIAKIDATVNE 236
+ + + K + + P C +C + + + I ++A N
Sbjct: 127 DATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENP 186
Query: 237 LEHTK--ITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVESGGKE 280
K + S P++ + N + + G E ++V+S +
Sbjct: 187 DIADKYGVMSVPSIAI-----NGYLVFVGVPYEEDFLDYVKSAAEG 227
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II,
structural genomics, protein structure initiative; 1.66A
{Chlorobaculum tepidum}
Length = 165
Score = 35.0 bits (81), Expect = 0.013
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 191 KHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRD 223
K +V F+A WC C+ P ++ + +A R
Sbjct: 35 KAYIVNFFATWCPPCRSEIPDMVQVQKTWASRG 67
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA,
thioredoxin fold, redox- active center; 1.90A {Xylella
fastidiosa}
Length = 193
Score = 34.7 bits (79), Expect = 0.017
Identities = 10/71 (14%), Positives = 19/71 (26%), Gaps = 2/71 (2%)
Query: 191 KHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKITSFPTLKL 250
K +VE + C HC G + A D+ + A + ++ +
Sbjct: 26 KIEVVEIFGYTCPHCAHFDSKLQAWGARQA--KDVRFTLVPAVFGGVWDPFARAYLAADV 83
Query: 251 YAKDDNRVIDY 261
Sbjct: 84 LGVAKRSHTAM 94
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
genomics, PSI, protein structure initiative; 1.12A
{Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 136
Score = 34.2 bits (79), Expect = 0.018
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 191 KHVLVEFYAPWCGHCKQLAPIYDKLGEKFAD 221
K ++ F+ PWC C AP ++
Sbjct: 25 KPAVLWFWTPWCPFCNAEAPSLSQVAAANPA 55
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural
genomics, midwest CE structural genomics; HET: MSE;
2.20A {Corynebacterium glutamicum}
Length = 160
Score = 34.0 bits (78), Expect = 0.026
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 189 KSKHVLVEFYAPWCGHCKQLA-PIYDKLGEKFADRDDITIA 228
+ K V+VE + C C P K+ + I
Sbjct: 29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIG 69
>2ls5_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, NEW structural genomics research
consortium; NMR {Bacteroides thetaiotaomicron}
Length = 159
Score = 33.8 bits (78), Expect = 0.026
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKL-GEKFADRDDITI 227
+ K V+++F A WCG C++ P +K K D D +
Sbjct: 32 RGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFAL 71
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double
disulfide bridge, membrane protein; 1.60A
{Bradyrhizobium japonicum} SCOP: c.47.1.10
Length = 186
Score = 34.4 bits (79), Expect = 0.027
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRD------DITIAKIDATVNELEHTKI 242
+ K +LV +A WC C++ P D+L K + + +I + L+ +
Sbjct: 59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANL 118
Query: 243 TSFPTL 248
T
Sbjct: 119 TRLGYF 124
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold,
DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis
serogroup B} PDB: 3dvx_A
Length = 195
Score = 34.1 bits (77), Expect = 0.033
Identities = 11/55 (20%), Positives = 21/55 (38%)
Query: 188 DKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEHTKI 242
K ++EF+ +C HC P+ KLG+ + + L ++
Sbjct: 20 QSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHVVWQPEMLGLARM 74
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure
initiativ midwest center for structural genomics,
rossmann fold; 1.10A {Methanosarcina mazei}
Length = 103
Score = 32.8 bits (75), Expect = 0.034
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 14/94 (14%)
Query: 188 DKSKHVL------VEFYA-PWCGHCKQLAPIYDKLGEKFA--DRDDITIAKIDATVNEL- 237
D+ HV V Y C CK+ + LG F D + + + V E+
Sbjct: 11 DRGNHVSGVDRGKVIMYGLSTCVWCKKTKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVR 70
Query: 238 EHTKITSFPTLKLYAKDDNRVI-DYNGERVLEAL 270
SFPT + +D + I + + + E+L
Sbjct: 71 RFNPSVSFPTTII---NDEKAIVGFKEKEIRESL 101
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.034
Identities = 6/31 (19%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 116 EVPSLRLIRLEEDMAKYKP-ATPEISVD-TV 144
E +L+ +L+ + Y + P +++ T+
Sbjct: 18 EKQALK--KLQASLKLYADDSAPALAIKATM 46
Score = 33.0 bits (74), Expect = 0.062
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 8/34 (23%)
Query: 46 KHSKFKKNLYIHLEEDMAKYKPAS-PEINVD-TV 77
K + KK L+ + Y S P + + T+
Sbjct: 19 KQA-LKK-----LQASLKLYADDSAPALAIKATM 46
Score = 32.6 bits (73), Expect = 0.069
Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 4/20 (20%)
Query: 235 NELEHTKITSFPTLKLYAKD 254
L+ K+ + +LKLYA D
Sbjct: 20 QALK--KLQA--SLKLYADD 35
Score = 32.2 bits (72), Expect = 0.087
Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 36/65 (55%)
Query: 170 DKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAK 229
+K A+K L AS ++ YA AP +A
Sbjct: 18 EKQALKKLQAS--------------LKLYAD------DSAP---------------ALA- 41
Query: 230 IDATV 234
I AT+
Sbjct: 42 IKATM 46
Score = 31.5 bits (70), Expect = 0.20
Identities = 6/31 (19%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 5 EVPSLRLIRLEEDMAKYKP-ATPEINVD-TV 33
E +L+ +L+ + Y + P + + T+
Sbjct: 18 EKQALK--KLQASLKLYADDSAPALAIKATM 46
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond,
redox-active center, transcription regulator; HET: MSE
GOL; 1.50A {Pseudomonas aeruginosa PAO1}
Length = 192
Score = 33.6 bits (76), Expect = 0.040
Identities = 9/35 (25%), Positives = 11/35 (31%)
Query: 188 DKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADR 222
K +VE + C HC P EK
Sbjct: 23 QPGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPAD 57
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily
protein SPOA0173, silicibacter DSS, structural genomics,
PSI-2; 1.95A {Silicibacter pomeroyi}
Length = 158
Score = 33.2 bits (76), Expect = 0.049
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 189 KSKHVLVEFYAPWCGHCKQ-LAPIYDKLGEKFADRD 223
+ K +++E + C C P+ K+ F +
Sbjct: 27 RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDK 62
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase,
disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB:
3dvw_A 3a3t_A
Length = 193
Score = 33.2 bits (75), Expect = 0.051
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 188 DKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFAD 221
K ++EF+ +C HC L P+ K + F D
Sbjct: 22 QAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKD 55
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR
{Chlamydophila pneumoniae}
Length = 154
Score = 32.6 bits (74), Expect = 0.082
Identities = 12/80 (15%), Positives = 22/80 (27%), Gaps = 15/80 (18%)
Query: 184 EIAFDKSKHVLVEF-YAPWCGHCKQLA-------PIYDKLGEKF-------ADRDDITIA 228
E + K + + F + WC C ++ G ++
Sbjct: 41 EHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEE 100
Query: 229 KIDATVNELEHTKITSFPTL 248
+ K+T FP L
Sbjct: 101 QRQKNQELKAQYKVTGFPEL 120
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG,
structural genomics, midwest center for structural
genomics; 1.75A {Corynebacterium glutamicum}
Length = 183
Score = 32.4 bits (74), Expect = 0.091
Identities = 5/34 (14%), Positives = 15/34 (44%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADR 222
+++ V++ + WC C+ + + E+
Sbjct: 58 ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAA 91
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825
/ FA 1090), DSBC, structural genomics, unknown funct 2;
2.00A {Neisseria gonorrhoeae}
Length = 147
Score = 31.9 bits (72), Expect = 0.13
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 185 IAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEK 218
K + F P C CK+L ++K+ +
Sbjct: 9 EVRGNGKLKVAVFSDPDCPFCKRLEHEFEKMTDV 42
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote
structural genomics, structural genomics consortium,
SGC, U function; 1.73A {Plasmodium yoelii}
Length = 160
Score = 31.7 bits (71), Expect = 0.15
Identities = 10/82 (12%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 181 NFDE-IAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITIAKIDATVNELEH 239
D+ I + + V + F + C ++ + K+ + + I + I +
Sbjct: 31 AVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDFNTM 90
Query: 240 TKITSFPTLKLYAKDDNRVIDY 261
++ ++ + ++ + +ID
Sbjct: 91 YELYDPVSVMFFYRNKHMMIDL 112
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2,
NYSGXRC, structu genomics, protein structure initiative;
1.76A {Thermus thermophilus}
Length = 154
Score = 31.2 bits (71), Expect = 0.23
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 188 DKSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADR 222
SK ++ F+A WC CK P ++ E+
Sbjct: 28 TVSKPAVIVFWASWCTVCKAEFPGLHRVAEETGVP 62
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A
{Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Length = 123
Score = 30.8 bits (69), Expect = 0.24
Identities = 17/120 (14%), Positives = 40/120 (33%), Gaps = 20/120 (16%)
Query: 174 VKVLVASNFDE----IAFDKSKHVLVEFYA-------PWCGHCKQLAPIYDKLGEKFADR 222
+ + S F+E + K + F WC C Q P+ + + ++
Sbjct: 4 YEEVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEG 63
Query: 223 DDITIAKI-------DATVNELEHTKITSFPTLKLYAKDDNRVIDYNGERVLEALSNFVE 275
++ D + ++ K+T+ PTL Y ++++ + +
Sbjct: 64 CVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKY-GTPQKLVESECLQA-NLVEMLFS 121
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox
protein, protein disulfide isomerase, thioredoxin fold;
1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB:
1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Length = 241
Score = 31.5 bits (71), Expect = 0.25
Identities = 10/64 (15%), Positives = 24/64 (37%)
Query: 155 NLKQHLLSQPLPEDWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDK 214
NL L+ + + + + + S++ + ++ F P+C +CKQ
Sbjct: 62 NLSNTLIEKEIYAPAGREMWQRMEQSHWLLDGKKDAPVIVYVFADPFCPYCKQFWQQARP 121
Query: 215 LGEK 218
+
Sbjct: 122 WVDS 125
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin;
thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase,
ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella
enterica subsp}
Length = 189
Score = 31.1 bits (69), Expect = 0.26
Identities = 5/35 (14%), Positives = 10/35 (28%)
Query: 190 SKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDD 224
+VEF++ +C C +
Sbjct: 14 DAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQ 48
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA,
thiol-disulfide oxidoreductase, DISU bond, redox-active
center; 1.58A {Salmonella enterica subsp} PDB: 1a23_A
1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A
1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A*
3e9j_B* 1ac1_A 2b6m_A 2b3s_A
Length = 191
Score = 31.0 bits (69), Expect = 0.28
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 189 KSKHVLVEFYAPWCGHCKQLAPIYDKLGEKFADRDD 224
+ ++EF++ +C HC Q + +
Sbjct: 20 AGEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPE 55
>3f9u_A Putative exported cytochrome C biogenesis-related; exported
cytochrome C biogenesis-related protein, bacteroide
fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Length = 172
Score = 30.8 bits (69), Expect = 0.30
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 184 EIAFDKSKHVLVEFYAPWCGHCKQL 208
E A +K V+++F C +C+++
Sbjct: 41 EYARQHNKPVMLDFTGYGCVNCRKM 65
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics,
PSI-2, protein ST initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.76A {Vibrio
fischeri}
Length = 185
Score = 31.1 bits (69), Expect = 0.32
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 190 SKHVLVEFYAPWCGHCKQLAPIYDKLGEK 218
+ E +A CGHC+ + + ++
Sbjct: 22 GMAPVTEVFALSCGHCRNMENFLPVISQE 50
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide
oxidoreductase, oxidoreductase, protein disulfide
isomerase, protein folding, thioredoxin; 2.4A
{Escherichia coli} SCOP: c.47.1.13
Length = 197
Score = 30.9 bits (69), Expect = 0.33
Identities = 17/151 (11%), Positives = 45/151 (29%), Gaps = 18/151 (11%)
Query: 98 TDEEDHQKILEFFGMSKDEVPSL--------RLIRLEEDMAKYK-PATPEISVD-----T 143
D + + G+ +E + + + E+ A + P + V+
Sbjct: 4 RSASDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADVQLRGVPAMFVNGKYQLN 63
Query: 144 VRSFVTEFLAGNLKQHLLSQPLPEDWDKNAVKVLVASNFDEIAFDK---SKHVLVEFYAP 200
+ T + ++Q+ + + +K ++EF++
Sbjct: 64 PQGMDTSNMDVFVQQYADTVKYLSEKKGGGTGAQYEDGKQYTTLEKPVAGAPQVLEFFSF 123
Query: 201 WCGHCKQLAPIYDKLGEKFADR-DDITIAKI 230
+C HC Q + + + + K
Sbjct: 124 FCPHCYQFEEVLHISDNVKKKLPEGVKMTKY 154
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi
DSS-3, thioredoxin-like, oxidoreductase, structural
genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Length = 175
Score = 30.8 bits (70), Expect = 0.36
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 9/51 (17%)
Query: 180 SNFDEIAFDKSKHV---------LVEFYAPWCGHCKQLAPIYDKLGEKFAD 221
+N D + D + V +VEF+ C +C++ L + +
Sbjct: 3 ANRDSLFNDPNAPVLGNPEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPN 53
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Length = 167
Score = 30.0 bits (67), Expect = 0.53
Identities = 6/46 (13%), Positives = 11/46 (23%), Gaps = 8/46 (17%)
Query: 186 AFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGE-------KFADRDD 224
++ +LV WC C+ D +
Sbjct: 51 RIERRYRLLV-AGEMWCPDCQINLAALDFAQRLQPNIELAIISKGR 95
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
c.47.1.24
Length = 153
Score = 29.9 bits (67), Expect = 0.56
Identities = 15/125 (12%), Positives = 39/125 (31%), Gaps = 24/125 (19%)
Query: 181 NFDE---IAFDKSKHVLVEFYAPWCGHCKQL-------APIYDKLGEKF----ADRDDIT 226
+F+ ++K +++ C+ L + + + E F D
Sbjct: 30 SFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEE 89
Query: 227 IAKIDATVNELEHTKITSFPTLKLYAKDDNRVI----DYNGERVLEALSNFVESGGKEGG 282
+ + FP + + + + + L+ ++ F+ G+ G
Sbjct: 90 GQRYIQFYK------LGDFPYVSILDPRTGQKLVEWHQLDVSSFLDQVTGFLGEHGQLDG 143
Query: 283 LPSGA 287
L S +
Sbjct: 144 LSSSS 148
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein,
periplasm, redox-active center, oxidoreductase; HET:
PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Length = 195
Score = 29.1 bits (64), Expect = 1.4
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 190 SKHVLVEFYAPWCGHCKQLAP-IYDKLGEKFADR 222
+ L++ ++ C C + + + EK D
Sbjct: 17 ADKTLIKVFSYACPFCYKYDKAVTGPVSEKVKDI 50
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein
structure initiative, midwest center for structural
genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP:
c.47.1.13
Length = 175
Score = 28.6 bits (64), Expect = 1.7
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 193 VLVEFYAPWCGHCKQLAPIYDKLGEKFADRDDITI 227
++EF C +C++ ++L + +
Sbjct: 30 KMIEFINVRCPYCRKWFEESEELLAQSVKSGKVER 64
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like,
oxidoreductase, competence, redox-active center; 1.40A
{Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Length = 202
Score = 28.5 bits (64), Expect = 2.0
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 193 VLVEFYAPWCGHCKQLAP-IYDKLGEKFADRDDITI 227
+VEF C CK I+ K+ + F D+ D+
Sbjct: 32 TVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKF 67
>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN
protein structure initiative, midwest center for
structural genomics; 2.50A {Pseudomonas syringae PV}
Length = 182
Score = 28.5 bits (63), Expect = 2.1
Identities = 6/33 (18%), Positives = 10/33 (30%), Gaps = 1/33 (3%)
Query: 191 KHVLVEFYAPWCGHCKQLAP-IYDKLGEKFADR 222
+ F P C + + D L + D
Sbjct: 15 PRLFEVFLEPTCPFSVKAFFKLDDLLAQAGEDN 47
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein
disulfide isomerase, protein folding, redox protein,
redox-active center; HET: MES; 1.90A {Escherichia coli}
SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A
2iyj_A
Length = 216
Score = 28.7 bits (63), Expect = 2.3
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 188 DKSKHVLVEFYAPWCGHCKQLAPIYDKL 215
+ KHV+ F CG+C +L
Sbjct: 84 PQEKHVITVFTDITCGYCHKLHEQMADY 111
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC,
structu genomics, protein structure initiative; 1.76A
{Novosphingobium aromaticivorans}
Length = 205
Score = 28.5 bits (63), Expect = 2.3
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 193 VLVEFYAPWCGHCKQLAP-IYDKLGEKFADRDDITIAKIDATVNELEH 239
LVEF + C HC +L I + + ++
Sbjct: 18 RLVEFVSYTCPHCSHFEIESEGQLKIGMVQPGKGAIEVRNFVRDPIDM 65
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains,
allosteric regulation hydrolase, membrane; 3.02A {Homo
sapiens}
Length = 691
Score = 28.9 bits (64), Expect = 2.4
Identities = 9/71 (12%), Positives = 20/71 (28%), Gaps = 1/71 (1%)
Query: 146 SFVTEFLAGNLKQHLLSQPLPEDWDKNAVKVLVASN-FDEIAFDKSKHVLVEFYAPWCGH 204
+ + G Q +L P+ V + A N + F +++ +
Sbjct: 103 VQQLQSMLGCELQAMLCVPVISRATDQVVALACAFNKLEGDLFTDEDEHVIQHCFHYTST 162
Query: 205 CKQLAPIYDKL 215
+ K
Sbjct: 163 VLTSTLAFQKE 173
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein
disulfide isomerase, protein folding, redox protein;
2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Length = 211
Score = 28.3 bits (62), Expect = 2.9
Identities = 7/53 (13%), Positives = 11/53 (20%)
Query: 166 PEDWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEK 218
KHV+ F C +C L + +
Sbjct: 62 VAGKILVDKLNSYKDEMIVYPAKNEKHVVTVFMDITCHYCHLLHQQLKEYNDL 114
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold,
cytochrome C maturation, atomic resolution
oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP:
c.47.1.10
Length = 156
Score = 27.6 bits (62), Expect = 3.0
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 160 LLSQPLPE----DWDKNAVKVLVASNFDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKL 215
L+ +P P+ + + D AF K K LV +A WC C AP+ +L
Sbjct: 9 LIGRPAPQTALPPLEGLQADNVQVPGLDPAAF-KGKVSLVNVWASWCVPCHDEAPLLTEL 67
Query: 216 GEK 218
G+
Sbjct: 68 GKD 70
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal
thioredoxin-like domain, N-terminal beta-sheet,
fingerprint rigion, oxidoreductase; 1.90A {Escherichia
coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Length = 168
Score = 27.6 bits (62), Expect = 3.1
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 182 FDEIAFDKSKHVLVEFYAPWCGHCKQLAPIYDKLGEK 218
+ + K VL+ +A WC C+ ++L +
Sbjct: 43 YQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ 79
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase,
translocation, secretion, protein transport; 2.18A
{Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19
c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A
3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Length = 844
Score = 28.0 bits (63), Expect = 5.0
Identities = 7/41 (17%), Positives = 19/41 (46%)
Query: 142 DTVRSFVTEFLAGNLKQHLLSQPLPEDWDKNAVKVLVASNF 182
+ V + + L + + + LPE+W + + L+ + +
Sbjct: 628 EIVENMIKSSLERAIAAYTPREELPEEWKLDGLVDLINTTY 668
>2bmb_A Folic acid synthesis protein FOL1; folate biosynthesis,
transferase, ligase, multifunctional enzyme; HET: PMM;
2.3A {Saccharomyces cerevisiae}
Length = 545
Score = 27.5 bits (61), Expect = 6.9
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 117 VPSLRLIRLEEDMAKYKPATPEISVDTVRSFV 148
+P ++ IR ++ + K +S+DT RS V
Sbjct: 295 IPLIKAIRESTELPQDKVI---LSIDTYRSNV 323
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold,
ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Length = 997
Score = 27.5 bits (61), Expect = 8.0
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 142 DTVRSFVTEFLAGNLKQHLLSQPLPEDWDKNAVKVLVASNF 182
+ V E +A + L + PEDWD +K +
Sbjct: 783 EAAIGMVEETVASLAENFLNPEVHPEDWDLEGLKATLLDTA 823
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase,
protein translocation, protein transport; 2.00A
{Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A
3bxz_A*
Length = 853
Score = 27.1 bits (61), Expect = 8.1
Identities = 8/41 (19%), Positives = 19/41 (46%)
Query: 142 DTVRSFVTEFLAGNLKQHLLSQPLPEDWDKNAVKVLVASNF 182
+T+ S + + ++ Q L E WD ++ + ++F
Sbjct: 666 ETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDF 706
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold,
oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis}
PDB: 3f4r_A* 3f4t_A*
Length = 226
Score = 26.8 bits (59), Expect = 9.0
Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 193 VLVEFYAPWCGHCKQLAP-IYDKLGEKFADRDDITI 227
+++E+ + C HC ++ K+ EK+ D +
Sbjct: 42 LMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLY 77
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.387
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,752,309
Number of extensions: 294863
Number of successful extensions: 1046
Number of sequences better than 10.0: 1
Number of HSP's gapped: 937
Number of HSP's successfully gapped: 227
Length of query: 305
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 212
Effective length of database: 4,105,140
Effective search space: 870289680
Effective search space used: 870289680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.8 bits)