BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7941
(238 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 8/147 (5%)
Query: 79 IHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPD 138
++ + N L+ T +A+ I R ED G Y C + K A +EV PD
Sbjct: 35 MYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPD 94
Query: 139 ISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE 198
I+ + S + EG A + CK+ GYP P+ WR+++N SN SS + F + E
Sbjct: 95 ITGHKRSENK--NEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISN--SSGRFFIINKE 150
Query: 199 VLSLTKVTRSEM----GAYQCIAANGV 221
+ + ++ G Y+C A N +
Sbjct: 151 NYTELNIVNLQITEDPGEYECNATNSI 177
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 9/140 (6%)
Query: 83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQ---VNTNPMTKQMAFLEVVIPPDI 139
++ + R V N+ L IR +++ D G Y C+ + + + + V +PP +
Sbjct: 142 ILKKDVRFIVLSNN----YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTV 197
Query: 140 SSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEV 199
+ ++ + G S LVC A G+P P ++W + + E I + +FS +S
Sbjct: 198 QARQSIVNATANLGQSVTLVCDADGFPEPTMSWTK--DGEPIENEEEDDEKHIFSDDSSE 255
Query: 200 LSLTKVTRSEMGAYQCIAAN 219
L++ V +++ Y CIA N
Sbjct: 256 LTIRNVDKNDEAEYVCIAEN 275
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 20/163 (12%)
Query: 81 EHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDIS 140
E + N R+SV ND ++ TL I + +D G Y C V T+ A + V I +
Sbjct: 43 EKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLM 102
Query: 141 SEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVL 200
+ EG A +VC P I W+ + +++I++ + + + + L
Sbjct: 103 FKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHK-GRDVILKKDV----RFIVLSNNYL 157
Query: 201 SLTKVTRSEMGAYQC---IAANG------------VPPTVSKR 228
+ + +++ G Y+C I A G VPPTV R
Sbjct: 158 QIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQAR 200
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 4/134 (2%)
Query: 102 LNIRSVRREDRGYYMCQVNTNPMTKQMAF-LEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
L I +V G + C +Q L V +PP E T D +G AK+ C
Sbjct: 679 LTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPT--DKAFAQGSDAKVEC 736
Query: 161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANG 220
KA G+P P++TW++ + S + VE L + + ++ G Y C A NG
Sbjct: 737 KADGFPKPQVTWKKAVGDTPGEYKDLKKSDNI-RVEEGTLHVDNIQKTNEGYYLCEAING 795
Query: 221 VPPTVSKRLMLHVH 234
+ +S +M+ V
Sbjct: 796 IGSGLSAVIMISVQ 809
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 96/216 (44%), Gaps = 45/216 (20%)
Query: 28 FTCVVNN-LGGHRVSSSVTDTH------------VNTGGSIVFP---TDSSAMKVAWIKA 71
+ CVVNN +GG V + +T T V+ G VF T + V+W+K
Sbjct: 321 YLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMK- 379
Query: 72 DTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAF- 130
D KA+ H+++ L I SV++ED+G Y C V + + + +
Sbjct: 380 DGKAI----------------GHSES---VLRIESVKKEDKGMYQCFVRNDRESAEASAE 420
Query: 131 --LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPS 188
L P + + + M P G S L C A G PTP+I+W + K I ++
Sbjct: 421 LKLGGRFDPPVIRQAFQEETMEP-GPSVFLKCVAGGNPTPEISWELDGKK--IANNDRYQ 477
Query: 189 SQKVFSVESEV---LSLTKVTRSEMGAYQCIAANGV 221
+ +V +V L++T V ++ G Y+CIA + V
Sbjct: 478 VGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKV 513
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 57/142 (40%), Gaps = 16/142 (11%)
Query: 84 ITNNARLSV----THNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPD 138
I NN R V T N LNI SV D G Y C + + + A L V P
Sbjct: 470 IANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPY 529
Query: 139 ISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE 198
I E + G + + C GYP I W R DN+ + + QKVF +
Sbjct: 530 IRQMEKKA---IVAGETLIVTCPVAGYPIDSIVWER-DNRALPINRK----QKVFP--NG 579
Query: 199 VLSLTKVTR-SEMGAYQCIAAN 219
L + V R S+ Y C+A N
Sbjct: 580 TLIIENVERNSDQATYTCVAKN 601
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 15/119 (12%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
TL I+ ED G Y+C VN + + + + V P +S++ V G A C
Sbjct: 307 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAP-LSAKIDPPTQTVDFGRPAVFTC 365
Query: 161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
+ G P ++W + D K I S+ V +ES V + + G YQC N
Sbjct: 366 QYTGNPIKTVSWMK-DGKAI------GHSESVLRIES-------VKKEDKGMYQCFVRN 410
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 155 SAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT--RSEMGA 212
A++ CKA G P P+I W R D + + P +++ S V + R E+ A
Sbjct: 56 GAEIECKASGNPMPEIIWIRSDGTAV---GDVPGLRQISSDGKLVFPPFRAEDYRQEVHA 112
Query: 213 --YQCIAANGVPPTVSK 227
Y C+A N +S+
Sbjct: 113 QVYACLARNQFGSIISR 129
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 11/101 (10%)
Query: 28 FTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN 87
FTC NL GH+ ++ + +V I+ PTD + + + K + KA V
Sbjct: 692 FTCHARNLAGHQQFTTPLNVYVPPRW-ILEPTDKAFAQGSDAKVECKADGFPKPQVTWKK 750
Query: 88 A---------RLSVTHN-DANTWTLNIRSVRREDRGYYMCQ 118
A L + N TL++ ++++ + GYY+C+
Sbjct: 751 AVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCE 791
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 53/136 (38%), Gaps = 23/136 (16%)
Query: 102 LNIRSVRREDRGY--YMCQVN---TNPMTKQMAFLEVVIPPDISS------EETSGDMMV 150
L+IR V ED GY Y C+ T +VI ISS DM
Sbjct: 201 LHIREVGPED-GYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKT 259
Query: 151 PEGGSA-KLVCKAKGYPTPKITWRR----EDNKEIIVRSNPPSSQKVFSVESEVLSLTKV 205
G S L+C A+GYP P W + K+ +V ++ +V V S L +
Sbjct: 260 YSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLND-----RVKQV-SGTLIIKDA 313
Query: 206 TRSEMGAYQCIAANGV 221
+ G Y C+ N V
Sbjct: 314 VVEDSGKYLCVVNNSV 329
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 91/219 (41%), Gaps = 47/219 (21%)
Query: 28 FTCVVNNLGGHRVSSSV----------------TDTHVNTGGSIVFP---TDSSAMKVAW 68
+TC N G SS+V D H G + F S ++V+W
Sbjct: 76 YTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSW 135
Query: 69 IKADTKAVLAIHEHVITNNARL--SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-- 124
K ++ ++A L S HN A TL I + G Y C +NP+
Sbjct: 136 YKDG---------ELLKDDANLQTSFIHNVA---TLQILQTDQSHVGQYNCSA-SNPLGT 182
Query: 125 ---TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEII 181
+ ++ E +PP + S D+ + E G+ K C G KITW + DN+EI
Sbjct: 183 ASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFK--CHVTGTAPIKITWAK-DNREI- 238
Query: 182 VRSNPPSSQKVFSVE-SEVLSLTKVTRSEMGAYQCIAAN 219
P + K+ VE + L++ KVT+ + G Y C A+N
Sbjct: 239 ---RPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN 274
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 25/166 (15%)
Query: 61 SSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV- 119
S +KV W K +T+ I E ++ R+S + A L + ++ ED G Y C+
Sbjct: 318 SPEIKVLWYKDETE----IQE---SSKFRMSFVESVA---VLEMYNLSVEDSGDYTCEAH 367
Query: 120 NTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKE 179
N L+V PP + + + +G L C+ +G P +++W + D +E
Sbjct: 368 NAAGSASSSTSLKVKEPPVFRKKPHPVETL--KGADVHLECELQGTPPFQVSWHK-DKRE 424
Query: 180 IIVRSNPPSSQKVFSVESE----VLSLTKVTRSEMGAYQCIAANGV 221
+ S K + + SE + + V +++G YQC A+N V
Sbjct: 425 L-------RSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDV 463
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 158 LVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIA 217
L CK G P +I W +E K +RS P + F L + KV S++G Y C A
Sbjct: 25 LQCKVDGTPEIRIAWYKEHTK---LRSAPAYKMQ-FKNNVASLVINKVDHSDVGEYTCKA 80
Query: 218 ANGVPPTVSKRLML 231
N V S +++
Sbjct: 81 ENSVGAVASSAVLV 94
Score = 33.5 bits (75), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 20/164 (12%)
Query: 59 TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQ 118
T ++ +K+ W K D + + N ++++ N A TL + V + D G Y C
Sbjct: 222 TGTAPIKITWAK-DNREIRP------GGNYKMTLVENTA---TLTVLKVTKGDAGQYTCY 271
Query: 119 V-NTNPMTKQMAFLEVVIPPD-ISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRRED 176
N A L V PP I E S +V + + CK G P K+ W + D
Sbjct: 272 ASNVAGKDSCSAQLGVQEPPRFIKKLEPS--RIVKQDEHTRYECKIGGSPEIKVLWYK-D 328
Query: 177 NKEIIVRSNPPSSQKVFSVES-EVLSLTKVTRSEMGAYQCIAAN 219
EI S ++ VES VL + ++ + G Y C A N
Sbjct: 329 ETEI----QESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 368
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 11/139 (7%)
Query: 98 NTWTLNIRSVRREDRGYYMCQVN--TNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGS 155
N L I SV D G Y C N + L+V + P I+ ++ + EG
Sbjct: 60 NGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPI--NVKIIEGLK 117
Query: 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQC 215
A L C G P P ++W + D+ +R N ++ +ES L + V + + G Y+C
Sbjct: 118 AVLPCTTMGNPKPSVSWIKGDSA---LREN----SRIAVLESGSLRIHNVQKEDAGQYRC 170
Query: 216 IAANGVPPTVSKRLMLHVH 234
+A N + SK + L V
Sbjct: 171 VAKNSLGTAYSKLVKLEVE 189
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 19/104 (18%)
Query: 137 PDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE 196
P I++ + D +V E A +C + YP P+I+W R NK +I K+F
Sbjct: 8 PVITTPLETVDALVEE--VATFMCAVESYPQPEISWTR--NKILI---------KLFDTR 54
Query: 197 ------SEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
++L++ V S+ G Y C A NGV V L V
Sbjct: 55 YSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVK 98
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 74/185 (40%), Gaps = 39/185 (21%)
Query: 58 PTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMC 117
P S + AWI +E+ + R V+ N L I V + D G Y C
Sbjct: 127 PPHSGELSYAWI---------FNEYPSYQDNRRFVSQETGN---LYIAKVEKSDVGNYTC 174
Query: 118 QVNTNPMTKQMAFLEVVIPPD---------ISSEETSGDMMVPE------GGSAKLVCKA 162
V TN +T +V+ PP + E ++ PE G + KL C A
Sbjct: 175 VV-TNTVTNH----KVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFA 229
Query: 163 KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222
G P P I WRR D K I ++ S + +L + + + G+Y+C+A N
Sbjct: 230 LGNPVPTILWRRADGKPIARKARRHKS-------NGILEIPNFQQEDAGSYECVAENSRG 282
Query: 223 PTVSK 227
V+K
Sbjct: 283 KNVAK 287
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 62/154 (40%), Gaps = 22/154 (14%)
Query: 66 VAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT 125
+ W +AD K + AR + H L I + ++ED G Y C V N
Sbjct: 237 ILWRRADGKPI-----------ARKARRHKSNGI--LEIPNFQQEDAGSYEC-VAENSRG 282
Query: 126 KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN 185
K +A ++ + + D+ V S CKA G P P W + +
Sbjct: 283 KNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKN--------GD 334
Query: 186 PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
P ++ +E L++T V S+ G YQC+A N
Sbjct: 335 PLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAEN 368
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSE-M 210
E KL C+ KG P P I W+ I +SV L + +++
Sbjct: 22 EEKKVKLSCEVKGNPKPHIRWKLNGTDVDI------GMDFRYSVVDGSLLINNPNKTQDA 75
Query: 211 GAYQCIAANGVPPTVSKRLMLH 232
G YQCIA N VS+ L
Sbjct: 76 GTYQCIATNSFGTIVSREAKLQ 97
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 74/185 (40%), Gaps = 39/185 (21%)
Query: 58 PTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMC 117
P S + AWI +E+ + R V+ N L I V + D G Y C
Sbjct: 126 PPHSGELSYAWI---------FNEYPSYQDNRRFVSQETGN---LYIAKVEKSDVGNYTC 173
Query: 118 QVNTNPMTKQMAFLEVVIPPD---------ISSEETSGDMMVPE------GGSAKLVCKA 162
V TN +T +V+ PP + E ++ PE G + KL C A
Sbjct: 174 VV-TNTVTNH----KVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFA 228
Query: 163 KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222
G P P I WRR D K I ++ S + +L + + + G+Y+C+A N
Sbjct: 229 LGNPVPTILWRRADGKPIARKARRHKS-------NGILEIPNFQQEDAGSYECVAENSRG 281
Query: 223 PTVSK 227
V+K
Sbjct: 282 KNVAK 286
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 62/154 (40%), Gaps = 22/154 (14%)
Query: 66 VAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT 125
+ W +AD K + AR + H L I + ++ED G Y C V N
Sbjct: 236 ILWRRADGKPI-----------ARKARRHKSNGI--LEIPNFQQEDAGSYEC-VAENSRG 281
Query: 126 KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN 185
K +A ++ + + D+ V S CKA G P P W + +
Sbjct: 282 KNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKN--------GD 333
Query: 186 PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
P ++ +E L++T V S+ G YQC+A N
Sbjct: 334 PLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAEN 367
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSE-M 210
E KL C+ KG P P I W+ I +SV L + +++
Sbjct: 21 EEKKVKLSCEVKGNPKPHIRWKLNGTDVDI------GMDFRYSVVDGSLLINNPNKTQDA 74
Query: 211 GAYQCIAANGVPPTVSKRLMLH 232
G YQCIA N VS+ L
Sbjct: 75 GTYQCIATNSFGTIVSREAKLQ 96
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 61/146 (41%), Gaps = 25/146 (17%)
Query: 102 LNIRSVRREDRGYYMCQV-NTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
L +R++ D G Y+C+ N ++ AFL+V + P I + E G LVC
Sbjct: 60 LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNE---TTYENGQVTLVC 116
Query: 161 KAKGYPTPKITWRR--------EDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGA 212
A+G P P+ITW+R E +K + R S L + V S+ G
Sbjct: 117 DAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHG-----SSSLHIKDVKLSDSGR 171
Query: 213 YQCIAANGVPPTVSKRLMLHVHCTYL 238
Y C AA+ R+ H YL
Sbjct: 172 YDCEAAS--------RIGGHQKSMYL 189
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 16/88 (18%)
Query: 137 PDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRR-----EDNKEIIVRSNPPSSQK 191
P IS + S + G C+A G P P I+W R E+N++ I++ +
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGS------ 56
Query: 192 VFSVESEVLSLTKVTRSEMGAYQCIAAN 219
+ L++ + S+ G Y C A N
Sbjct: 57 -----NTELTVRNIINSDGGPYVCRATN 79
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 21/114 (18%)
Query: 119 VNTNPMTKQMAFLEVV------IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITW 172
+N N + + AFLE V + P + +T DM V EG +A+ CK +GYP P++ W
Sbjct: 18 INANKVENEDAFLEEVAEEKPHVKPYFT--KTILDMEVVEGSAARFDCKVEGYPDPEVMW 75
Query: 173 RREDNKEIIVRSNPPSSQKVFSVESE-----VLSLTKVTRSEMGAYQCIAANGV 221
++D NP + F ++ + L++++V + Y C A N +
Sbjct: 76 FKDD--------NPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSL 121
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 21/114 (18%)
Query: 119 VNTNPMTKQMAFLEVV------IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITW 172
+N N + + AFLE V + P + +T DM V EG +A+ CK +GYP P++ W
Sbjct: 18 INANKVENEDAFLEEVAEEKPHVKPYFT--KTILDMDVVEGSAARFDCKVEGYPDPEVMW 75
Query: 173 RREDNKEIIVRSNPPSSQKVFSVESE-----VLSLTKVTRSEMGAYQCIAANGV 221
++D NP + F ++ + L++++V + Y C A N +
Sbjct: 76 FKDD--------NPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSL 121
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 20/145 (13%)
Query: 84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM--AFLEVVIPPDISS 141
IT + R V+ + N + N+ + D+G Y C V++ +TK + F+ ++ P+ ++
Sbjct: 53 ITMDKRRFVSQTNGNLYIANVEA---SDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTT 109
Query: 142 EETSGDMMVP-------EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS 194
+ D++V G + L C A G P P I WR+ V PS+ ++ S
Sbjct: 110 KPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRK-------VLEPMPSTAEI-S 161
Query: 195 VESEVLSLTKVTRSEMGAYQCIAAN 219
VL + + + G Y+C A N
Sbjct: 162 TSGAVLKIFNIQLEDEGIYECEAEN 186
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 5/135 (3%)
Query: 81 EHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDIS 140
E + N R+SV ND ++ TL I + +D G Y C V T+ A + V I +
Sbjct: 43 EKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLM 102
Query: 141 SEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVL 200
+ EG A +VC P I W+ + +++I++ + + + + L
Sbjct: 103 FKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHK-GRDVILKKDV----RFIVLSNNYL 157
Query: 201 SLTKVTRSEMGAYQC 215
+ + +++ G Y+C
Sbjct: 158 QIRGIKKTDEGTYRC 172
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 143 ETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSL 202
+ GD+ V EG ++ CK G PTP ++W+ D K + P S+ K+ E+ V SL
Sbjct: 14 QAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQL-DGKPV----RPDSAHKMLVRENGVHSL 68
Query: 203 --TKVTRSEMGAYQCIAAN 219
VT + G Y CIA N
Sbjct: 69 IIEPVTSRDAGIYTCIATN 87
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 30/158 (18%)
Query: 82 HVITNNARLSVTHNDANTWT---LNIRSVRREDRGYYMCQVNT---NPMTKQMAFLEVVI 135
++ N +++ ++ D T+ + +SV RED G Y C V+ N + L V++
Sbjct: 47 RLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLV 106
Query: 136 PP-----DISSEETSGDMMVPEGGSAKLVCKAK-GYPTPKITWRREDNKEIIVRSNPPSS 189
PP +I S T G+ V L C + G P + TW K+ IV P S
Sbjct: 107 PPSKPTVNIPSSATIGNRAV-------LTCSEQDGSPPSEYTWF----KDGIVMPTNPKS 155
Query: 190 QKVFSVESEVLSLTK-------VTRSEMGAYQCIAANG 220
+ FS S VL+ T ++ S+ G Y C A NG
Sbjct: 156 TRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNG 193
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWR--REDNKEIIVRSNPPSSQKVFSVESEV----- 199
++ +PE KL C G+ +P++ W+ + D ++ +N + S E V
Sbjct: 13 EVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNN----KITASYEDRVTFLPT 68
Query: 200 -LSLTKVTRSEMGAYQCIAA 218
++ VTR + G Y C+ +
Sbjct: 69 GITFKSVTREDTGTYTCMVS 88
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 9/119 (7%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
TL I SV ED G Y C+ N + +++ + D G + + C
Sbjct: 257 TLQIPSVSFEDEGTYECEAE-NSKGRDTVQGRIIVQAQPEWLKVISDTEADIGSNLRWGC 315
Query: 161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
A G P P + W R P +SQ V + L +K++ + G YQC+A N
Sbjct: 316 AAAGKPRPTVRWLR--------NGEPLASQNRVEVLAGDLRFSKLSLEDSGMYQCVAEN 366
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGA 212
G L C A G P P+I WR+ D S ++ L + V+ + G
Sbjct: 221 GQQVTLECFAFGNPVPRIKWRKVDG----------SLSPQWTTAEPTLQIPSVSFEDEGT 270
Query: 213 YQCIAANGVP-PTVSKRLMLHVHCTYL 238
Y+C A N TV R+++ +L
Sbjct: 271 YECEAENSKGRDTVQGRIIVQAQPEWL 297
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 158 LVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIA 217
L C+A+ P W+ + ++ P S ++ +++ TK + G YQC+A
Sbjct: 26 LACRARASPPATYRWKMNGTE---MKLEPGSRHQLVGGNLVIMNPTKA--QDAGVYQCLA 80
Query: 218 ANGVPPTVSKRLMLHV 233
+N V VS+ +L
Sbjct: 81 SNPVGTVVSREAILRF 96
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 9/118 (7%)
Query: 102 LNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCK 161
L+I++V ED G Y C+ N + ++I + D G + C
Sbjct: 259 LHIQNVDFEDEGTYECEAE-NIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCV 317
Query: 162 AKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
A G P P + W R+ P +SQ V L +K+ + G YQC+A N
Sbjct: 318 ASGKPRPAVRWLRD--------GQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAEN 367
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 142 EETSGDMMVPEGGSAK---LVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE 198
EE + PEG + + L C+A+ P W+ + ++ P S ++ V +
Sbjct: 8 EEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTE---LKMGPDSRYRL--VAGD 62
Query: 199 VLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
++ V + G+YQC+A N VS+ L
Sbjct: 63 LVISNPVKAKDAGSYQCVATNARGTVVSREASLRF 97
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKV 205
D G L C A G P P+I WR+ D + + K S E +L + V
Sbjct: 215 ADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQ---------TSKWLSSEP-LLHIQNV 264
Query: 206 TRSEMGAYQCIAAN-GVPPTVSKRLMLHVHCTYL 238
+ G Y+C A N T R+++H +L
Sbjct: 265 DFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWL 298
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 10/119 (8%)
Query: 107 VRREDRGYYMCQVNTNP---MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK 163
V+ +D G Y C V TN + + A L + S+EE + + EG C
Sbjct: 69 VKAKDAGSYQC-VATNARGTVVSREASLRFGFLQEFSAEERD-PVKITEGWGVMFTCSPP 126
Query: 164 -GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
YP W + I P ++ S + L + K S++G Y C A + +
Sbjct: 127 PHYPALSYRWLLNEFPNFI----PADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHI 181
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 135 IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS 194
PP I E D++V +G A L CKA+G PTP I W + + + + P S ++
Sbjct: 8 FPPRIV--EHPSDLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVETDKDDPRSHRMLL 64
Query: 195 VESEVLSLTKV----TRSEMGAYQCIAANGVPPTVSKRLMLHV 233
+ L V +R + G Y C+A N + VS L V
Sbjct: 65 PSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 26/180 (14%)
Query: 65 KVAWIKADTKAVLAIHEHVITNNARLSVTH-NDANTWTLNIRSVR-REDRGYYMC----- 117
++ W+K K ++ R V +D L I+ +R + D Y C
Sbjct: 37 RITWMKKGKK----------VSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNS 86
Query: 118 --QVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGG-SAKLVCKAKGYPTPKITWRR 174
++NT+ K E +PP S + + V E +A ++C A G P P+I+W
Sbjct: 87 LGEINTS--AKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISW-- 142
Query: 175 EDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
K+ + S+ ++ + S L + S+ G Y+C+A N S L+V
Sbjct: 143 --FKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYVR 200
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 16/76 (21%)
Query: 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE-----SEVLSLT--KV 205
GG A VC+A G P P+ITW ++ K SSQ+ +E VL + +V
Sbjct: 21 GGVASFVCQATGEPKPRITWMKKGKKV--------SSQRFEVIEFDDGAGSVLRIQPLRV 72
Query: 206 TRSEMGAYQCIAANGV 221
R E Y+C A N +
Sbjct: 73 QRDE-AIYECTATNSL 87
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 55/136 (40%), Gaps = 13/136 (9%)
Query: 99 TWTLNIRSVRREDRGYYMCQVNTN----PMTKQMAFLEVVIPPDISSEETSGDMMVPEGG 154
TW++ + SV D+G Y C V T Q+ +E I + V G
Sbjct: 72 TWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGS 131
Query: 155 SAKLVCKAKGYPTPKITWRR--EDNKEIIVRSNPPSSQKVFSV-------ESEVLSLTKV 205
+ + +CK P P I W + E N I N P Q + + E EVL L V
Sbjct: 132 NVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNV 191
Query: 206 TRSEMGAYQCIAANGV 221
+ + G Y C+A N +
Sbjct: 192 SFEDAGEYTCLAGNSI 207
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 150 VPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLS--LTKVTR 207
VP + K C + G P P + W + + KE P + V S + V
Sbjct: 28 VPAAKTVKFKCPSSGTPNPTLRWLK-NGKEF----KPDHRIGGYKVRYATWSIIMDSVVP 82
Query: 208 SEMGAYQCIAAN 219
S+ G Y CI N
Sbjct: 83 SDKGNYTCIVEN 94
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 55/136 (40%), Gaps = 13/136 (9%)
Query: 99 TWTLNIRSVRREDRGYYMCQVNTN----PMTKQMAFLEVVIPPDISSEETSGDMMVPEGG 154
TW++ + SV D+G Y C V T Q+ +E I + V G
Sbjct: 73 TWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGS 132
Query: 155 SAKLVCKAKGYPTPKITWRR--EDNKEIIVRSNPPSSQKVFSV-------ESEVLSLTKV 205
+ + +CK P P I W + E N I N P Q + + E EVL L V
Sbjct: 133 NVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNV 192
Query: 206 TRSEMGAYQCIAANGV 221
+ + G Y C+A N +
Sbjct: 193 SFEDAGEYTCLAGNSI 208
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 150 VPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLS--LTKVTR 207
VP + K C + G P P + W + + KE P + V S + V
Sbjct: 29 VPAAKTVKFKCPSSGTPQPTLRWLK-NGKEF----KPDHRIGGYKVRYATWSIIMDSVVP 83
Query: 208 SEMGAYQCIAAN 219
S+ G Y CI N
Sbjct: 84 SDKGNYTCIVEN 95
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 55/136 (40%), Gaps = 13/136 (9%)
Query: 99 TWTLNIRSVRREDRGYYMCQVNTN----PMTKQMAFLEVVIPPDISSEETSGDMMVPEGG 154
TW++ + SV D+G Y C V T Q+ +E I + V G
Sbjct: 72 TWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGS 131
Query: 155 SAKLVCKAKGYPTPKITWRR--EDNKEIIVRSNPPSSQKVFSV-------ESEVLSLTKV 205
+ + +CK P P I W + E N I N P Q + + E EVL L V
Sbjct: 132 NVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNV 191
Query: 206 TRSEMGAYQCIAANGV 221
+ + G Y C+A N +
Sbjct: 192 SFEDAGEYTCLAGNSI 207
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 150 VPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLS--LTKVTR 207
VP + K C + G P P + W + + KE P + V S + V
Sbjct: 28 VPAAKTVKFKCPSSGTPQPTLRWLK-NGKEF----KPDHRIGGYKVRYATWSIIMDSVVP 82
Query: 208 SEMGAYQCIAAN 219
S+ G Y CI N
Sbjct: 83 SDKGNYTCIVEN 94
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 135 IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS 194
PP I E D++V +G A L CKA+G PTP I W + + + + P S ++
Sbjct: 8 FPPRIV--EHPSDLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVETDKDDPRSHRMLL 64
Query: 195 VESEVLSLTKV----TRSEMGAYQCIAANGVPPTVSKRLMLHV 233
+ L V +R + G Y C+A N + VS L V
Sbjct: 65 PSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 21/121 (17%)
Query: 109 REDRGYYMCQVNTNPMTKQM---AFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKA-KG 164
R D G Y+C V N + + + A LEV I D + S D+MV G A + C+ +G
Sbjct: 81 RPDEGVYVC-VARNYLGEAVSHDASLEVAILRDDFRQNPS-DVMVAVGEPAVMECQPPRG 138
Query: 165 YPTPKITWRRE----DNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANG 220
+P P I+W+++ D+K+ + ++ L +T +S+ G Y C+ N
Sbjct: 139 HPEPTISWKKDGSPLDDKD-----------ERITIRGGKLMITYTRKSDAGKYVCVGTNM 187
Query: 221 V 221
V
Sbjct: 188 V 188
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 133 VVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKV 192
V +PP + + +++ + S L C A G+P P +TW + D + I N +
Sbjct: 8 VNVPPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTK-DGEPIEQEDN--EEKYS 64
Query: 193 FSVESEVLSLTKVTRSEMGAYQCIAAN 219
F+ + L + KV +S+ Y CIA N
Sbjct: 65 FNYDGSELIIKKVDKSDEAEYICIAEN 91
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMA-FLEVVIPPDISSEETSGDMMVPEGGSAKLV 159
+L+I+ V+ D G Y C+ + Q + +L++ P S +T EG +
Sbjct: 64 SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTI--YYSWEGNPINIS 121
Query: 160 CKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE-VLSLTKVTRSEMGAYQCIAA 218
C K P I WRR+ ++++ + ++ K +S + +L + + ++ G Y C A
Sbjct: 122 CDVKSNPPASIHWRRD---KLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178
Query: 219 NGV 221
N +
Sbjct: 179 NHI 181
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKV---FSVESEVLSLTKVTRS 208
E G LVC A+G P P+ITW+R + + ++ S L + V S
Sbjct: 14 ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS 73
Query: 209 EMGAYQCIAANGV 221
+ G Y C AA+ +
Sbjct: 74 DSGRYDCEAASRI 86
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 8/137 (5%)
Query: 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMA-FLEVVIPPDISSEETS 145
+ R+ V ++ +L+I+ V+ D G Y C+ + Q + +L++ P S +T
Sbjct: 51 DGRIEVKGQHGSS-SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTI 109
Query: 146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE-VLSLTK 204
EG + C K P I WRR+ ++++ + ++ K +S + +L +
Sbjct: 110 --YYSWEGNPINISCDVKSNPPASIHWRRD---KLVLPAKNTTNLKTYSTGRKMILEIAP 164
Query: 205 VTRSEMGAYQCIAANGV 221
+ ++ G Y C A N +
Sbjct: 165 TSDNDFGRYNCTATNHI 181
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKV---FSVESEVLSLTKVTRS 208
E G LVC A+G P P+ITW+R + + ++ S L + V S
Sbjct: 14 ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS 73
Query: 209 EMGAYQCIAANGV 221
+ G Y C AA+ +
Sbjct: 74 DSGRYDCEAASRI 86
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 54/121 (44%), Gaps = 18/121 (14%)
Query: 102 LNIRSVRREDRGYYMCQVNTNPMTK--QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLV 159
L+++SV R D G Y CQV T+ Q +L V P + E D+ VP +L
Sbjct: 62 LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPK--DLAVPPNAPFQLS 119
Query: 160 CKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAA 218
C+A G P P I W R K + PS VL++T VT+S + C A
Sbjct: 120 CEAVGPPEPVTIVWWRGTTK---IGGPAPS--------PSVLNVTGVTQST--XFSCEAH 166
Query: 219 N 219
N
Sbjct: 167 N 167
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDN--KEIIVRSNPPSSQKVFSVESEVLSLTKV 205
+ V +G KL C +G P I W ++ + + P S Q LSL V
Sbjct: 12 LTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF----LSLKSV 67
Query: 206 TRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
RS+ G Y C +G +S+ + L V
Sbjct: 68 ERSDAGRYWCQVEDGGETEISQPVWLTVE 96
>pdb|4FS0|A Chain A, Crystal Structure Of Mutant F136d Of Mouse Nectin-2
Extracellular Fragment D1-D2
Length = 225
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 16/130 (12%)
Query: 58 PTDSSAMKVAWIKADTKAVLAIHEHVITN-------NARLSV------THNDANTWTLNI 104
PT +V W + D V A H + RLS T+ D TL
Sbjct: 28 PTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAF 87
Query: 105 RSVRREDRGYYMCQVNTNP--MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKA 162
R +R ED G Y C+ T+P + + +L V+ P+ + E + P+ +
Sbjct: 88 RGLRVEDEGNYTCEFATDPNGTRRGVTWLRVIAQPE-NHAEAQEVTIGPQSVAVARCVST 146
Query: 163 KGYPTPKITW 172
G P +ITW
Sbjct: 147 GGRPPARITW 156
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 79/211 (37%), Gaps = 50/211 (23%)
Query: 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIK 70
FL NV +G+DA+ C V+ +P S W++
Sbjct: 224 FLQRPSNVIAIEGKDAVLECCVSG----------------------YPPPS----FTWLR 257
Query: 71 ADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN-TNPMTKQMA 129
+ L ++ + + L +++ V +D G Y C V N A
Sbjct: 258 GEEVIQLRSKKYSLLGGSNLLISN------------VTDDDSGTYTCVVTYKNENISASA 305
Query: 130 FLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSS 189
L V++PP + + ++ E + C G P P + W + N ++++ S+
Sbjct: 306 ELTVLVPPWFLNHPS--NLYAYESMDIEFECAVSGKPVPTVNWMK--NGDVVIPSD---- 357
Query: 190 QKVFS-VESEVLSLTKVTRSEMGAYQCIAAN 219
F V L + V +S+ G YQC+A N
Sbjct: 358 --YFQIVGGSNLRILGVVKSDEGFYQCVAEN 386
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 12/122 (9%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPD------ISSEETSGDMMVPEGG 154
L I ++ D G Y C T+ EV I D + + +++ EG
Sbjct: 178 ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGK 237
Query: 155 SAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQ 214
A L C GYP P TW R +E+I S+K + L ++ VT + G Y
Sbjct: 238 DAVLECCVSGYPPPSFTWLR--GEEVIQL----RSKKYSLLGGSNLLISNVTDDDSGTYT 291
Query: 215 CI 216
C+
Sbjct: 292 CV 293
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 109 REDRGYYMCQV---NTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY 165
+ D G Y C+ ++ + + A + V P S+ S + G + L C+ G
Sbjct: 91 KPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFM--GDTVLLKCEVIGD 148
Query: 166 PTPKITWRREDNKEIIVRSNP-PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
P P I W++ N++ + NP P +V + S L ++++ + G Y+C A N
Sbjct: 149 PMPTIHWQK--NQQDL---NPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARN 198
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 144 TSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT 203
T+ MV G L C A G PTP I W ++ + PS + F ++ L +T
Sbjct: 228 TASSQMVLRGMDLLLECIASGVPTPDIAWYKKG-------GDLPSDKAKFENFNKALRIT 280
Query: 204 KVTRSEMGAYQCIAAN 219
V+ + G Y C+A+N
Sbjct: 281 NVSEEDSGEYFCLASN 296
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 102 LNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCK 161
L I +V ED G Y C + +N M + V + + ++++ G +LVC+
Sbjct: 277 LRITNVSEEDSGEYFC-LASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCR 335
Query: 162 AKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
A G P P + W N E + +S PP+ + + ++ + T++ S YQC +N
Sbjct: 336 ANGNPKPTVQWMV--NGEPL-QSAPPNPNREVAGDTIIFRDTQI--SSRAVYQCNTSN 388
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 132 EVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQK 191
E+ PP I+ ++++ D +V + + C+AKG P P W R +++ + +P S +
Sbjct: 12 ELTQPPTIT-KQSAKDHIVDPRDNILIECEAKGNPAPSFHWTR-NSRFFNIAKDPRVSMR 69
Query: 192 VFSVESEVLSLTKVTRSE--MGAYQCIAANGVPPTVSKRLMLHV 233
S + V+ R E G YQC A N +S R+ L V
Sbjct: 70 RRS-GTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQV 112
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 73/179 (40%), Gaps = 24/179 (13%)
Query: 65 KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVR-REDRGYYMC------ 117
++ W+K K +++ + +D L I+ +R + D Y C
Sbjct: 38 RITWMKKGKK---------VSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSL 88
Query: 118 -QVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGG-SAKLVCKAKGYPTPKITWRRE 175
++NT+ K E +P + + + V E G +A ++C A G P P+I+W
Sbjct: 89 GEINTS--AKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTATMLCAAGGNPDPEISW--- 143
Query: 176 DNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
K+ + S+ ++ + S L + S+ G Y+C+A N S L+V
Sbjct: 144 -FKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYVR 201
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 16/74 (21%)
Query: 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE-----SEVLSLT--KV 205
GG A VC+A G P P+ITW ++ K SSQ+ +E VL + +V
Sbjct: 22 GGVASFVCQATGEPKPRITWMKKGKKV--------SSQRFEVIEFDDGAGSVLRIQPLRV 73
Query: 206 TRSEMGAYQCIAAN 219
R E Y+C A N
Sbjct: 74 QRDEA-IYECTATN 86
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 25/166 (15%)
Query: 61 SSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV- 119
S +KV W K +T+ I E ++ R+S + A L + ++ ED G Y C+
Sbjct: 126 SPEIKVLWYKDETE----IQE---SSKFRMSFVESVA---VLEMYNLSVEDSGDYTCEAH 175
Query: 120 NTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKE 179
N L+V PP + + + +G L C+ +G P +++W + D +E
Sbjct: 176 NAAGSASSSTSLKVKEPPVFRKKPHPVETL--KGADVHLECELQGTPPFQVSWHK-DKRE 232
Query: 180 IIVRSNPPSSQKVFSVESE----VLSLTKVTRSEMGAYQCIAANGV 221
+ S K + + SE + + V +++G YQC A+N V
Sbjct: 233 L-------RSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDV 271
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
PP + S D+ + E G+ K C G KITW + DN+EI P + K+ V
Sbjct: 5 PPFFDLKPVSVDLALGESGTFK--CHVTGTAPIKITWAK-DNREI----RPGGNYKMTLV 57
Query: 196 E-SEVLSLTKVTRSEMGAYQCIAAN 219
E + L++ KVT+ + G Y C A+N
Sbjct: 58 ENTATLTVLKVTKGDAGQYTCYASN 82
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 20/164 (12%)
Query: 59 TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQ 118
T ++ +K+ W K D + + N ++++ N A TL + V + D G Y C
Sbjct: 30 TGTAPIKITWAK-DNREIRP------GGNYKMTLVENTA---TLTVLKVTKGDAGQYTCY 79
Query: 119 V-NTNPMTKQMAFLEVVIPPD-ISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRRED 176
N A L V PP I E S +V + + CK G P K+ W + D
Sbjct: 80 ASNVAGKDSCSAQLGVQEPPRFIKKLEPS--RIVKQDEHTRYECKIGGSPEIKVLWYK-D 136
Query: 177 NKEIIVRSNPPSSQKVFSVES-EVLSLTKVTRSEMGAYQCIAAN 219
EI S ++ VES VL + ++ + G Y C A N
Sbjct: 137 ETEI----QESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 25/166 (15%)
Query: 61 SSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV- 119
S +KV W K +T+ I E ++ R+S + A L + ++ ED G Y C+
Sbjct: 126 SPEIKVLWYKDETE----IQE---SSKFRMSFVESVA---VLEMYNLSVEDSGDYTCEAH 175
Query: 120 NTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKE 179
N L+V PP + + + +G L C+ +G P +++W + D +E
Sbjct: 176 NAAGSASSSTSLKVKEPPVFRKKPHPVETL--KGADVHLECELQGTPPFQVSWHK-DKRE 232
Query: 180 IIVRSNPPSSQKVFSVESE----VLSLTKVTRSEMGAYQCIAANGV 221
+ S K + + SE + + V +++G YQC A+N V
Sbjct: 233 L-------RSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDV 271
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
PP + S D+ + E G+ K C G KITW + DN+EI P + K+ V
Sbjct: 5 PPFFDLKPVSVDLALGESGTFK--CHVTGTAPIKITWAK-DNREI----RPGGNYKMTLV 57
Query: 196 E-SEVLSLTKVTRSEMGAYQCIAAN 219
E + L++ KVT+ + G Y C A+N
Sbjct: 58 ENTATLTVLKVTKGDAGQYTCYASN 82
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 20/164 (12%)
Query: 59 TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQ 118
T ++ +K+ W K D + + N ++++ N A TL + V + D G Y C
Sbjct: 30 TGTAPIKITWAK-DNREIRP------GGNYKMTLVENTA---TLTVLKVTKGDAGQYTCY 79
Query: 119 V-NTNPMTKQMAFLEVVIPPD-ISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRRED 176
N A L V PP I E S +V + + CK G P K+ W + D
Sbjct: 80 ASNVAGKDSCSAQLGVQAPPRFIKKLEPS--RIVKQDEHTRYECKIGGSPEIKVLWYK-D 136
Query: 177 NKEIIVRSNPPSSQKVFSVES-EVLSLTKVTRSEMGAYQCIAAN 219
EI S ++ VES VL + ++ + G Y C A N
Sbjct: 137 ETEI----QESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176
>pdb|1S3K|H Chain H, Crystal Structure Of A Humanized Fab (Hu3s193) In Complex
With The Lewis Y Tetrasaccharide
pdb|3EYV|H Chain H, Anti-Lewis Y Fab Fragment With Lewis Y Antigen In The
Presence Of Zinc Ions
pdb|3EYV|B Chain B, Anti-Lewis Y Fab Fragment With Lewis Y Antigen In The
Presence Of Zinc Ions
Length = 222
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 76 VLAIHEHVITNNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVV 134
V AI ++ T R +++ N NT L + S+R ED G Y C T + A+
Sbjct: 54 VGAITDYPDTVKGRFTISRDNSKNTLFLQMDSLRPEDTGVYFCARGTRDGS-WFAYWGQG 112
Query: 135 IPPDISSEETSGDMMVP--------EGGSAKLVCKAKGY-PTP-KITW 172
P +SS T G + P GG+A L C K Y P P ++W
Sbjct: 113 TPVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSW 160
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTR 207
++V EG +A G+P P+++W R+ ++I S P Q FS L++ VT+
Sbjct: 15 VVVLEGSTATFEAHISGFPVPEVSWFRDG--QVISTSTLPGVQISFSDGRAKLTIPAVTK 72
Query: 208 SEMGAYQCIAANG 220
+ G Y A NG
Sbjct: 73 ANSGRYSLKATNG 85
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 70/179 (39%), Gaps = 47/179 (26%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P F PL++V + +G A F + H++ FP +V+W
Sbjct: 6 PTFTQPLQSVVVLEGSTATF-----------------EAHISG-----FPVP----EVSW 39
Query: 69 IKADTKAVLAIHEHVITNNA--RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK 126
+ VI+ + + ++ +D L I +V + + G Y + TN +
Sbjct: 40 FR---------DGQVISTSTLPGVQISFSDGRA-KLTIPAVTKANSGRYSLKA-TNGSGQ 88
Query: 127 QMAFLEVVI-----PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEI 180
+ E+++ PP+ S M V +G +L + G PTP + + R D EI
Sbjct: 89 ATSTAELLVKAETAPPNFVQRLQS--MTVRQGSQVRLQVRVTGIPTPVVKFYR-DGAEI 144
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 21/120 (17%)
Query: 109 REDRGYYMCQVNTNPMTKQMAFLEVVI----PPDISSEETSGDMMVPEGGSAKLVCKAKG 164
+ D G Y C+ ++ F ++++ PP IS + S + G C+A G
Sbjct: 66 KSDEGIYRCEGRVE-ARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASG 124
Query: 165 YPTPKITWRR-----EDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
P P I+W R E+N++ I++ + + L++ + S+ G Y C A N
Sbjct: 125 SPEPAISWFRNGKLIEENEKYILKGS-----------NTELTVRNIINSDGGPYVCRATN 173
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTR 207
++V EG +A G+P P+++W R + ++I S P Q FS L++ VT+
Sbjct: 15 VVVLEGSTATFEAHISGFPVPEVSWFR--DGQVISTSTLPGVQISFSDGRAKLTIPAVTK 72
Query: 208 SEMGAYQCIAANG 220
+ G Y A NG
Sbjct: 73 ANSGRYSLKATNG 85
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 70/179 (39%), Gaps = 47/179 (26%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P F PL++V + +G A F + H++ FP +V+W
Sbjct: 6 PTFTQPLQSVVVLEGSTATF-----------------EAHISG-----FPVP----EVSW 39
Query: 69 IKADTKAVLAIHEHVITNNA--RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK 126
+ VI+ + + ++ +D L I +V + + G Y + TN +
Sbjct: 40 FR---------DGQVISTSTLPGVQISFSDGRA-KLTIPAVTKANSGRYSLKA-TNGSGQ 88
Query: 127 QMAFLEVVI-----PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEI 180
+ E+++ PP+ S M V +G +L + G PTP + + R D EI
Sbjct: 89 ATSTAELLVKAETAPPNFVQRLQS--MTVRQGSQVRLQVRVTGIPTPVVKFYR-DGAEI 144
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 21/120 (17%)
Query: 109 REDRGYYMCQVNTNPMTKQMAFLEVVI----PPDISSEETSGDMMVPEGGSAKLVCKAKG 164
+ D G Y C+ ++ F ++++ PP IS + S + G C+A G
Sbjct: 162 KSDEGIYRCEGRVEARG-EIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASG 220
Query: 165 YPTPKITWRR-----EDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
P P I+W R E+N++ I++ + L++ + S+ G Y C A N
Sbjct: 221 SPEPAISWFRNGKLIEENEKYILKGSNTE-----------LTVRNIINSDGGPYVCRATN 269
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 30/71 (42%)
Query: 102 LNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCK 161
L I + ED G Y CQ Q A + + I ++ E +G A++VC+
Sbjct: 62 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCR 121
Query: 162 AKGYPTPKITW 172
P P ++W
Sbjct: 122 VSSSPAPAVSW 132
>pdb|4FMK|A Chain A, Crystal Structure Of Mouse Nectin-2 Extracellular Fragment
D1-D2
pdb|4FN0|A Chain A, Crystal Structure Of Mouse Nectin-2 Extracellular Fragment
D1-D2, 2nd Crystal Form
pdb|4FN0|B Chain B, Crystal Structure Of Mouse Nectin-2 Extracellular Fragment
D1-D2, 2nd Crystal Form
pdb|4FN0|C Chain C, Crystal Structure Of Mouse Nectin-2 Extracellular Fragment
D1-D2, 2nd Crystal Form
Length = 225
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 50/130 (38%), Gaps = 16/130 (12%)
Query: 58 PTDSSAMKVAWIKADTKAVLAIHEHVITN-------NARLSV------THNDANTWTLNI 104
PT +V W + D V A H + RLS T+ D TL
Sbjct: 28 PTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAF 87
Query: 105 RSVRREDRGYYMCQVNTNP--MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKA 162
R +R ED G Y C+ T P + + +L V+ P+ + E + P+ +
Sbjct: 88 RGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPE-NHAEAQEVTIGPQSVAVARCVST 146
Query: 163 KGYPTPKITW 172
G P +ITW
Sbjct: 147 GGRPPARITW 156
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKV 205
G ++ G + + CKA G PTP I W + K + SNP +S++ L +
Sbjct: 118 GTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTK--VDMSNP-----RYSLKDGFLQIENS 170
Query: 206 TRSEMGAYQCIAANGVPPTVSKRLMLHV 233
+ G Y+C+A N + SK L+V
Sbjct: 171 REEDQGKYECVAENSMGTEHSKATNLYV 198
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
PP+I + + + V GG A C A+G P P I WR+ K +S ++ +
Sbjct: 6 PPEIIRKPQNQGVRV--GGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 63
Query: 196 ESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
+ + R + Y+C+A NGV VS L ++
Sbjct: 64 SILRIEPVRAGRDDA-PYECVAENGVGDAVSADATLTIY 101
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 71/180 (39%), Gaps = 19/180 (10%)
Query: 65 KVAWIKADTKAVLAIHEHVITNNARLSVTH-NDANTWTLNIRSVRR-EDRGYYMCQVNTN 122
K+ W K K +N R V +D + L I+ +R D Y C + N
Sbjct: 37 KIVWNKKGKKV----------SNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNN 86
Query: 123 P-----MTKQMAFLEVVIPPDISSEETSGDMMVPEGG-SAKLVCKAKGYPTPKITWRRED 176
T+ E IP + + + V E +A ++C A G P P+ITW + D
Sbjct: 87 VGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFK-D 145
Query: 177 NKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCT 236
+ +N +++ S L + + S+ G Y+C+A N S L+V T
Sbjct: 146 FLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGT 205
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 15/86 (17%)
Query: 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE-----SEVLSLTKV-T 206
GG A +C+A G P PKI W ++ K S+Q+ +E VL + + T
Sbjct: 21 GGVASFICQATGDPRPKIVWNKKGKKV--------SNQRFEVIEFDDGSGSVLRIQPLRT 72
Query: 207 RSEMGAYQCIAANGVPP-TVSKRLML 231
+ Y+C+A+N V +VS RL +
Sbjct: 73 PRDEAIYECVASNNVGEISVSTRLTV 98
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 19/137 (13%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMA-FLEVVIPPDI---SSEETSGDMMVPEGGSA 156
TL I V R D+G Y C ++ MTK+ + F+ V P + S E+ + V G
Sbjct: 161 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATV--GERV 218
Query: 157 KLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCI 216
++ K GYP P+I W + I + SN VL++ +V+ + G Y I
Sbjct: 219 RIPAKYLGYPPPEIKWYKNG---IPLESNHTIKA------GHVLTIMEVSERDTGNYTVI 269
Query: 217 AANGVPPTVSKRLMLHV 233
N +SK HV
Sbjct: 270 LTN----PISKEKQSHV 282
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 165 YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
YP+ K ++ N+++ +S S K F L++ VTRS+ G Y C A++G+
Sbjct: 132 YPSSKHQHKKLVNRDLKTQSG--SEMKKFL---STLTIDGVTRSDQGLYTCAASSGL 183
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKV 205
G ++ G + + CKA G PTP I W + K + SNP +S++ L +
Sbjct: 120 GTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTK--VDMSNP-----RYSLKDGFLQIENS 172
Query: 206 TRSEMGAYQCIAANGVPPTVSKRLMLHV 233
+ G Y+C+A N + SK L+V
Sbjct: 173 REEDQGKYECVAENSMGTEHSKATNLYV 200
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
PP+I + + + V GG A C A+G P P I WR+ K +S ++ +
Sbjct: 8 PPEIIRKPQNQGVRV--GGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 65
Query: 196 ESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
+ + R + Y+C+A NGV VS L ++
Sbjct: 66 SILRIEPVRAGRDDA-PYECVAENGVGDAVSADATLTIY 103
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRR-EDNKEIIVRSN----PPSSQKVFSVESEVLS 201
D+ VPE S KL C G+ +P++ W+ + + +V N P + +V + S ++
Sbjct: 10 DVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV-TFSSSGIT 68
Query: 202 LTKVTRSEMGAYQCIAA 218
+ VTR + G Y C+ +
Sbjct: 69 FSSVTRKDNGEYTCMVS 85
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 24/173 (13%)
Query: 62 SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWT---LNIRSVRREDRGYYMCQ 118
S+ +V W K V ++ N++++ + D T++ + SV R+D G Y C
Sbjct: 29 SSPRVEW-----KFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCM 83
Query: 119 VNTNP---MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC-KAKGYPTPKITWRR 174
V+ + L V++PP S S V G A L C + G P + +W +
Sbjct: 84 VSEEGGQNYGEVSIHLTVLVPP--SKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFK 141
Query: 175 E-------DNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANG 220
+ D K+ N S +S L VT + G Y C A NG
Sbjct: 142 DGISMLTADAKKTRAFMN---SSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNG 191
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 19/137 (13%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMA-FLEVVIPPDI---SSEETSGDMMVPEGGSA 156
TL I V R D+G Y C ++ MTK+ + F+ V P + S E+ + V G
Sbjct: 291 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATV--GERV 348
Query: 157 KLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCI 216
++ K GYP P+I W + I + SN VL++ +V+ + G Y I
Sbjct: 349 RIPAKYLGYPPPEIKWYKNG---IPLESNHTIKA------GHVLTIMEVSERDTGNYTVI 399
Query: 217 AANGVPPTVSKRLMLHV 233
N +SK HV
Sbjct: 400 LTN----PISKEKQSHV 412
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 102 LNIRSVRREDRGYYMCQVNTNPMTK------QMAFLEVVIPPDISSEETSGDMMVPEGGS 155
+ +++ +D+G Y+C K Q+ LE V P + E + G S
Sbjct: 627 MELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSI---GES 683
Query: 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQC 215
++ C A G P P+I W + DN+ ++ S V + L++ +V + + G Y C
Sbjct: 684 IEVSCTASGNPPPQIMWFK-DNETLV-----EDSGIVLKDGNRNLTIRRVRKEDEGLYTC 737
Query: 216 IAAN 219
A +
Sbjct: 738 QACS 741
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 165 YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
YP+ K ++ N+++ +S S K F L++ VTRS+ G Y C A++G+
Sbjct: 262 YPSSKHQHKKLVNRDLKTQSG--SEMKKFL---STLTIDGVTRSDQGLYTCAASSGL 313
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 14/143 (9%)
Query: 86 NNARL-SVTHNDANTWTLNIRSVRR-EDRGYYMCQVNTNPM------TKQMAFLEVVIPP 137
N+ R ++ +++ L I+ +R D Y C V NP K E +PP
Sbjct: 48 NSQRFETIEFDESAGAVLRIQPLRTPRDENIYEC-VAQNPHGEVTVHAKLTVLREDQLPP 106
Query: 138 DISSEETSGDMMVPEGG-SAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE 196
+ + + V E +A ++C A G P P+ITW K+ + S+ ++ +
Sbjct: 107 GFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWF----KDFLPVDPSTSNGRIKQLR 162
Query: 197 SEVLSLTKVTRSEMGAYQCIAAN 219
S L + ++ G Y+C+A+N
Sbjct: 163 SGGLQIESSEETDQGKYECVASN 185
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 14/79 (17%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE-----VLS 201
D + GG A VC+A G P P++TW ++ K +SQ+ ++E + VL
Sbjct: 15 DQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV--------NSQRFETIEFDESAGAVLR 66
Query: 202 LTKV-TRSEMGAYQCIAAN 219
+ + T + Y+C+A N
Sbjct: 67 IQPLRTPRDENIYECVAQN 85
>pdb|3SBW|C Chain C, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Human Pd-L1
Length = 222
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 60 DSSAMKVAWIKADTKAVLAIH-------EHV-ITNNARLSVTHNDANTWTLNIRSVRRED 111
D +A+ V W D + +H +H ARL L I V+ +D
Sbjct: 32 DLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQD 91
Query: 112 RGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKIT 171
G Y C ++ + ++V P + ++ ++ P +L C+A+GYP ++
Sbjct: 92 AGVYRCMISYGGADYKRITVKVNAPYNKINQRIL--VVDPVTSEHELTCQAEGYPKAEVI 149
Query: 172 WRREDNKEI---IVRSNPPSSQKVFSVES 197
W D++ + +N +K+F+V S
Sbjct: 150 WTSSDHQVLSGKTTTTNSKREEKLFNVTS 178
>pdb|3FN3|A Chain A, Dimeric Structure Of Pd-L1
pdb|3FN3|B Chain B, Dimeric Structure Of Pd-L1
Length = 221
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 60 DSSAMKVAWIKADTKAVLAIH-------EHV-ITNNARLSVTHNDANTWTLNIRSVRRED 111
D +A+ V W D + +H +H ARL L I V+ +D
Sbjct: 32 DLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQD 91
Query: 112 RGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKIT 171
G Y C ++ + ++V P + ++ ++ P +L C+A+GYP ++
Sbjct: 92 AGVYRCMISYGGADYKRITVKVNAPYNKINQRIL--VVDPVTSEHELTCQAEGYPKAEVI 149
Query: 172 WRREDNKEI---IVRSNPPSSQKVFSVES 197
W D++ + +N +K+F+V S
Sbjct: 150 WTSSDHQVLSGKTTTTNSKREEKLFNVTS 178
>pdb|3BIK|A Chain A, Crystal Structure Of The Pd-1PD-L1 Complex
pdb|3BIS|A Chain A, Crystal Structure Of The Pd-L1
pdb|3BIS|B Chain B, Crystal Structure Of The Pd-L1
Length = 222
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 60 DSSAMKVAWIKADTKAVLAIH-------EHV-ITNNARLSVTHNDANTWTLNIRSVRRED 111
D +A+ V W D + +H +H ARL L I V+ +D
Sbjct: 32 DLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQD 91
Query: 112 RGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKIT 171
G Y C ++ + ++V P + ++ ++ P +L C+A+GYP ++
Sbjct: 92 AGVYRCMISYGGADYKRITVKVNAPYNKINQRIL--VVDPVTSEHELTCQAEGYPKAEVI 149
Query: 172 WRREDNKEI---IVRSNPPSSQKVFSVES 197
W D++ + +N +K+F+V S
Sbjct: 150 WTSSDHQVLSGKTTTTNSKREEKLFNVTS 178
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 10/127 (7%)
Query: 94 HNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV-VIPPDISSEETSGDMMVPE 152
HN + L ++ ED G Y C+V+ Q L++ V+ ++ ++V +
Sbjct: 264 HNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQ 323
Query: 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGA 212
G + CK G P P + W + P S +V L + V + G
Sbjct: 324 GQDVTIPCKVTGLPAPNVVWS---------HNAKPLSGGRATVTDSGLVIKGVKNGDKGY 374
Query: 213 YQCIAAN 219
Y C A N
Sbjct: 375 YGCRATN 381
>pdb|2RCJ|A Chain A, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|B Chain B, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|E Chain E, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|F Chain F, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|I Chain I, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|J Chain J, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|M Chain M, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|N Chain N, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|Q Chain Q, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|R Chain R, Solution Structure Of Human Immunoglobulin M
Length = 218
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 13/96 (13%)
Query: 88 ARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSG 146
R +++ ND+ NT L + S+R ED G Y C + + + P +SS T G
Sbjct: 66 GRFTISRNDSKNTLFLQMDSLRPEDTGVYFCARDGG--SSAPDYWGQGTPVTVSSASTKG 123
Query: 147 DMMVP--------EGGSAKLVCKAKGY-PTP-KITW 172
+ P GG+A L C K Y P P ++W
Sbjct: 124 PSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSW 159
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 15/119 (12%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
TL I+ ED G Y+C VN + + + + V P +S++ V G A C
Sbjct: 271 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAP-LSAKIDPPTQTVDFGRPAVFTC 329
Query: 161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
+ G P ++W + D K I S+ V +ES V + + G YQC N
Sbjct: 330 QYTGNPIKTVSWMK-DGKAI------GHSESVLRIES-------VKKEDKGMYQCFVRN 374
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 36/111 (32%)
Query: 28 FTCVVNN-LGGHRVSSSVTDTH------------VNTGGSIVFP---TDSSAMKVAWIKA 71
+ CVVNN +GG V + +T T V+ G VF T + V+W+K
Sbjct: 285 YLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMK- 343
Query: 72 DTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122
D KA+ H+++ L I SV++ED+G Y C V +
Sbjct: 344 DGKAI----------------GHSES---VLRIESVKKEDKGMYQCFVRND 375
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT--RSEMGA- 212
A++ CKA G P P+I W R D + + P +++ S V + R E+ A
Sbjct: 22 AEIECKASGNPMPEIIWIRSDGTAV---GDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQ 78
Query: 213 -YQCIAANGVPPTVSK 227
Y C+A N +S+
Sbjct: 79 VYACLARNQFGSIISR 94
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 19/98 (19%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE-----VLS 201
D + GG A VC+A G P P++TW ++ K +SQ+ ++E + VL
Sbjct: 15 DQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV--------NSQRFETIEFDESAGAVLR 66
Query: 202 LTKV-TRSEMGAYQCIAANGVPPTVSKRLMLHVHCTYL 238
+ + T + Y+C+A N V + +H T L
Sbjct: 67 IQPLRTPRDENVYECVAQNSV-----GEITVHAKLTVL 99
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 155 SAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQ 214
+A ++C A G P P+ITW K+ + S+ ++ + S L + ++ G Y+
Sbjct: 125 TATMLCAASGNPDPEITWF----KDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYE 180
Query: 215 CIAAN 219
C+A N
Sbjct: 181 CVATN 185
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 23/138 (16%)
Query: 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMA-----FLEVV-IPPDI 139
+N R+ + A L I S D+G Y C V TN + + ++ V + P
Sbjct: 154 SNGRIKQLRSGA----LQIESSEETDQGKYEC-VATNSAGVRYSSPANLYVRVQNVAPRF 208
Query: 140 SSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEV 199
S S ++M GG+ + C A G P P + W + +++ + P V V
Sbjct: 209 SILPMSHEIM--PGGNVNITCVAVGSPMPYVKW-MQGAEDLTPEDDMP-------VGRNV 258
Query: 200 LSLTKVTRSEMGAYQCIA 217
L LT V S Y C+A
Sbjct: 259 LELTDVKDS--ANYTCVA 274
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 15/119 (12%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
TL I+ ED G Y+C VN + + + + V P +S++ V G A C
Sbjct: 277 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAP-LSAKIDPPTQTVDFGRPAVFTC 335
Query: 161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
+ G P ++W + D K I S+ V +ES V + + G YQC N
Sbjct: 336 QYTGNPIKTVSWMK-DGKAI------GHSESVLRIES-------VKKEDKGMYQCFVRN 380
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 36/111 (32%)
Query: 28 FTCVVNN-LGGHRVSSSVTDTH------------VNTGGSIVFP---TDSSAMKVAWIKA 71
+ CVVNN +GG V + +T T V+ G VF T + V+W+K
Sbjct: 291 YLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMK- 349
Query: 72 DTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122
D KA+ H+++ L I SV++ED+G Y C V +
Sbjct: 350 DGKAI----------------GHSES---VLRIESVKKEDKGMYQCFVRND 381
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT--RSEMGA- 212
A++ CKA G P P+I W R D + + P +++ S V + R E+ A
Sbjct: 28 AEIECKASGNPMPEIIWIRSDGTAV---GDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQ 84
Query: 213 -YQCIAANGVPPTVSK 227
Y C+A N +S+
Sbjct: 85 VYACLARNQFGSIISR 100
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 155 SAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQ 214
+A ++C A G P P+ITW K+ + S+ ++ + S L + ++ G Y+
Sbjct: 125 TATMLCAASGNPDPEITW----FKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYE 180
Query: 215 CIAAN 219
C+A N
Sbjct: 181 CVATN 185
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 19/98 (19%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE-----VLS 201
D + GG A VC+A G P P++TW ++ K +SQ+ ++E + VL
Sbjct: 15 DQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV--------NSQRFETIEFDESAGAVLR 66
Query: 202 LTKV-TRSEMGAYQCIAANGVPPTVSKRLMLHVHCTYL 238
+ + T + Y+C+A N V + +H T L
Sbjct: 67 IQPLRTPRDENVYECVAQNSV-----GEITVHAKLTVL 99
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 15/119 (12%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
TL I+ ED G Y+C VN + + + + V P +S++ V G A C
Sbjct: 274 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAP-LSAKIDPPTQTVDFGRPAVFTC 332
Query: 161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
+ G P ++W + D K I S+ V +ES V + + G YQC N
Sbjct: 333 QYTGNPIKTVSWMK-DGKAI------GHSESVLRIES-------VKKEDKGMYQCFVRN 377
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 36/111 (32%)
Query: 28 FTCVVNN-LGGHRVSSSVTDTH------------VNTGGSIVFP---TDSSAMKVAWIKA 71
+ CVVNN +GG V + +T T V+ G VF T + V+W+K
Sbjct: 288 YLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMK- 346
Query: 72 DTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122
D KA+ H+++ L I SV++ED+G Y C V +
Sbjct: 347 DGKAI----------------GHSES---VLRIESVKKEDKGMYQCFVRND 378
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT--RSEMGA- 212
A++ CKA G P P+I W R D + + P +++ S V + R E+ A
Sbjct: 22 AEIECKASGNPMPEIIWIRSDGTAV---GDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQ 78
Query: 213 -YQCIAANGVPPTVSK 227
Y C+A N +S+
Sbjct: 79 VYACLARNQFGSIISR 94
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 23/136 (16%)
Query: 102 LNIRSVRREDRGY--YMC--------QVNTNPMTKQMAFLEVV--IPPDISSEETSGDMM 149
L+IR V ED GY Y C + + ++ E V + P ++ ++ +
Sbjct: 168 LHIREVGPED-GYKSYQCRTKHRLTGETRLSATKGRLVITEPVGSVRPKVNPQDKHQFID 226
Query: 150 VPEGGSAKLVCKAKGYPTPKITWRR----EDNKEIIVRSNPPSSQKVFSVESEVLSLTKV 205
V S L+C A+ YPTP W + K+ +V ++ +V V S L +
Sbjct: 227 VELASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLND-----RVKQV-SGTLIIKDA 280
Query: 206 TRSEMGAYQCIAANGV 221
+ G Y C+ N V
Sbjct: 281 VVEDSGKYLCVVNNSV 296
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 155 SAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQ 214
+A ++C A G P P+ITW K+ + S+ ++ + S L + ++ G Y+
Sbjct: 125 TATMLCAASGNPDPEITW----FKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYE 180
Query: 215 CIAAN 219
C+A N
Sbjct: 181 CVATN 185
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 19/98 (19%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE-----VLS 201
D + GG A VC+A G P P++TW ++ K +SQ+ ++E + VL
Sbjct: 15 DQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV--------NSQRFETIEFDESAGAVLR 66
Query: 202 LTKV-TRSEMGAYQCIAANGVPPTVSKRLMLHVHCTYL 238
+ + T + Y+C+A N V + +H T L
Sbjct: 67 IQPLRTPRDENVYECVAQNSV-----GEITVHAKLTVL 99
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 104 IRSVRREDRGYYMCQVNTNPMTKQMAFLEV-VIPPDISSEETSGDMMVPEGGSAKLVCKA 162
+R+ + D G Y C+V+T P A L + V+ P + S + +G + C A
Sbjct: 83 LRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTA 142
Query: 163 KGYPTPKITWRRE 175
+G P P +TW E
Sbjct: 143 EGSPAPSVTWDTE 155
>pdb|4I0K|A Chain A, Crystal Structure Of Murine B7-H3 Extracellular Domain
Length = 222
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
+L ++ VR D G Y C V+ L+V P S + + G + C
Sbjct: 73 SLRLQRVRVTDEGSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITC 132
Query: 161 KA-KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGA---YQCI 216
+ +GYP ++ W+ D + + + N +SQ + E + + V R +GA Y C+
Sbjct: 133 SSYQGYPEAEVFWK--DGQGVPLTGNVTTSQ--MANERGLFDVHSVLRVVLGANGTYSCL 188
Query: 217 AANGV 221
N V
Sbjct: 189 VRNPV 193
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 142 EETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLS 201
+ + + V EG + + VC+A G P P I W + +SN ++ L
Sbjct: 389 DRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSN----GRLTVFPDGTLE 444
Query: 202 LTKVTRSEMGAYQCIAANG 220
+ + G Y CIAAN
Sbjct: 445 VRYAQVQDNGTYLCIAANA 463
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 47/135 (34%), Gaps = 13/135 (9%)
Query: 100 WTLNIRSVRREDRGYYMCQVNTN----PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGS 155
W+L + SV DRG Y C V T + LE I + G
Sbjct: 180 WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSD 239
Query: 156 AKLVCKAKGYPTPKITWRR--EDNKEIIVRSNPP-------SSQKVFSVESEVLSLTKVT 206
+ CK P I W + E N + P + E EVLSL VT
Sbjct: 240 VEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVT 299
Query: 207 RSEMGAYQCIAANGV 221
+ G Y C+A N +
Sbjct: 300 FEDAGEYTCLAGNSI 314
Score = 30.4 bits (67), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTR 207
+ VP + + C A G PTP I+W + + R + L + V
Sbjct: 133 LAVPAANTVRFRCPAAGNPTPSISWLKNGRE---FRGEHRIGGIKLRHQQWSLVMESVVP 189
Query: 208 SEMGAYQCIAAN 219
S+ G Y C+ N
Sbjct: 190 SDRGNYTCVVEN 201
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 30/71 (42%)
Query: 102 LNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCK 161
L I + ED G Y CQ Q A + + I ++ E +G A++VC+
Sbjct: 60 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCR 119
Query: 162 AKGYPTPKITW 172
P P ++W
Sbjct: 120 VSSSPAPAVSW 130
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/220 (20%), Positives = 86/220 (39%), Gaps = 47/220 (21%)
Query: 20 IAQGRDAIFTCVVNN-LGGHR--------VSSSVTDTHVNTGGSI-VFPTDSSAMKVAWI 69
I + ++TC NN GH VS+ + +++ S V D+ A
Sbjct: 433 ITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPE 492
Query: 70 KADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN-------TN 122
+T + ++ + + RL +++ + TL + +V R D Y+C + ++
Sbjct: 493 AQNTTYLWWVNGQSLPVSPRLQLSNGNR---TLTLFNVTRNDARAYVCGIQNSVSANRSD 549
Query: 123 PMTKQMAF---LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKE 179
P+T + + ++ PPD S G + L C + P+P+ +WR
Sbjct: 550 PVTLDVLYGPDTPIISPPDSS---------YLSGANLNLSCHSASNPSPQYSWRIN---- 596
Query: 180 IIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
+ ++VL + K+T + G Y C +N
Sbjct: 597 -----------GIPQQHTQVLFIAKITPNNNGTYACFVSN 625
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 9/135 (6%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVP--EGGSAKL 158
+L I+++ + D G+Y V + + + A + + P++ S + P + +
Sbjct: 72 SLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAF 131
Query: 159 VCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAA 218
C+ + + W +S P S + S + L+L VTR++ +Y+C
Sbjct: 132 TCEPETQDATYLWWVNN-------QSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQ 184
Query: 219 NGVPPTVSKRLMLHV 233
N V S ++L+V
Sbjct: 185 NPVSARRSDSVILNV 199
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 57/141 (40%), Gaps = 16/141 (11%)
Query: 99 TWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVV-----IP-PDISSEETSGDMMVPE 152
T L I ++ ++ G Y CQ N + ++ + +P P ISS + V +
Sbjct: 425 TQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKP---VED 481
Query: 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGA 212
+ C+ + T + W + +S P S + S + L+L VTR++ A
Sbjct: 482 KDAVAFTCEPEAQNTTYLWW-------VNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARA 534
Query: 213 YQCIAANGVPPTVSKRLMLHV 233
Y C N V S + L V
Sbjct: 535 YVCGIQNSVSANRSDPVTLDV 555
Score = 26.9 bits (58), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 183 RSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
+S P S + S ++ L+L VTR+++G Y+C N + S ++L+V
Sbjct: 327 QSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNV 377
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT 206
D+ G +A+L C+ G P P I W R + I R SS + L++
Sbjct: 16 DVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDG----RTHTLTVMTEE 71
Query: 207 RSEMGAYQCIAANGVPPT-VSKRLMLH 232
+ + G Y CIA N V S +L+L
Sbjct: 72 QEDEGVYTCIATNEVGEVETSSKLLLQ 98
>pdb|3QS7|E Chain E, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS7|F Chain F, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS7|G Chain G, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS7|H Chain H, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
Length = 423
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 104 IRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK 163
+ SV R D GYY C + +P Q A + +V I++ +S D + + + K
Sbjct: 294 VSSVARNDTGYYTCSSSKHP--SQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFK 351
Query: 164 GYPTPKITW 172
YP + TW
Sbjct: 352 AYPQIRCTW 360
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVL---SLT 203
D++V + A L CK +G P P I W ++ V +N S +V + + ++
Sbjct: 18 DLVVKKNEPATLNCKVEGKPEPTIEWFKDGEP---VSTNEKKSHRVQFKDGALFFYRTMQ 74
Query: 204 KVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
+ G Y C+A N V VS+ L +
Sbjct: 75 GKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 11/123 (8%)
Query: 104 IRSVRREDRGYYMC--QVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCK 161
++ + +D G Y C + + A L++ + D E D V +G +A L C
Sbjct: 73 MQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPK-DTRVAKGETALLECG 131
Query: 162 A-KGYPTPKITWRRE----DNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCI 216
KG P P + W ++ D+ + + +S +V V+ L ++ V + G Y+CI
Sbjct: 132 PPKGIPEPTLIWIKDGVPLDDLKAMSFG---ASSRVRIVDGGNLLISNVEPIDEGNYKCI 188
Query: 217 AAN 219
A N
Sbjct: 189 AQN 191
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVL---SLT 203
D++V + A L CK +G P P I W ++ V +N S +V + + ++
Sbjct: 18 DLVVKKNEPATLNCKVEGKPEPTIEWFKDGEP---VSTNEKKSHRVQFKDGALFFYRTMQ 74
Query: 204 KVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
+ G Y C+A N V VS+ L +
Sbjct: 75 GKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 11/123 (8%)
Query: 104 IRSVRREDRGYYMC--QVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCK 161
++ + +D G Y C + + A L++ + D E D V +G +A L C
Sbjct: 73 MQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPK-DTRVAKGETALLECG 131
Query: 162 A-KGYPTPKITWRRE----DNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCI 216
KG P P + W ++ D+ + + +S +V V+ L ++ V + G Y+CI
Sbjct: 132 PPKGIPEPTLIWIKDGVPLDDLKAMSFG---ASSRVRIVDGGNLLISNVEPIDEGNYKCI 188
Query: 217 AAN 219
A N
Sbjct: 189 AQN 191
>pdb|3QS9|E Chain E, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS9|F Chain F, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS9|G Chain G, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS9|H Chain H, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
Length = 527
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 104 IRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK 163
+ SV R D GYY C + +P Q A + +V I++ +S D + + + K
Sbjct: 294 VSSVARNDTGYYTCSSSKHP--SQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFK 351
Query: 164 GYPTPKITW 172
YP + TW
Sbjct: 352 AYPQIRCTW 360
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 149 MVPEGGSAKLVCKAKGYPTPKITWRREDNK-----EIIVRS--NPPSSQKVFS--VESEV 199
++ E +++ C + GYP P TW++ +K E I N +++KVF V S
Sbjct: 418 VLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSST 477
Query: 200 LSLTKVTRSEMGAYQCIAANGVPPTVSKRLM 230
L++++ + + +C A N + + L+
Sbjct: 478 LNMSEAIKGFL--VKCCAYNSLGTSCETILL 506
>pdb|2FB4|H Chain H, Dir Primaerstruktur Des Kristallisierbaren Monoklonalen
Immunoglobulins Igg1 Kol. Ii. Aminosaeuresequenz Der L-
Kette, Lambda-Typ, Subgruppe I (German)
Length = 229
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 17/102 (16%)
Query: 88 ARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVNTNPMTKQMA------FLEVVIPPDIS 140
R +++ ND+ NT L + S+R ED G Y C + A + P +S
Sbjct: 66 GRFTISRNDSKNTLFLQMDSLRPEDTGVYFCARDGGHGFCSSASCFGPDYWGQGTPVTVS 125
Query: 141 SEETSGDMMVP--------EGGSAKLVCKAKGY-PTP-KITW 172
S T G + P GG+A L C K Y P P ++W
Sbjct: 126 SASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSW 167
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 155 SAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQ 214
+A LVCK G+P P + W R+ KEII Q+ F L + VT + YQ
Sbjct: 21 NATLVCKVTGHPKPIVKWYRQ-GKEIIADGLKYRIQE-FKGGYHQLIIASVTDDDATVYQ 78
Query: 215 CIAAN 219
A N
Sbjct: 79 VRATN 83
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 155 SAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQ 214
+A LVCK G+P P + W R+ KEII Q+ F L + VT + YQ
Sbjct: 19 NATLVCKVTGHPKPIVKWYRQ-GKEIIADGLKYRIQE-FKGGYHQLIIASVTDDDATVYQ 76
Query: 215 CIAAN 219
A N
Sbjct: 77 VRATN 81
>pdb|3MJ7|B Chain B, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
Length = 225
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 70/180 (38%), Gaps = 24/180 (13%)
Query: 58 PTDSSAMKVAWIKA-------DTKAVLAIHEHVITN-----NARLSVTHNDANTW--TLN 103
P D + + W+ + D +L + + N R+ T ND + ++N
Sbjct: 30 PEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASIN 89
Query: 104 IRSVRREDRGYYMCQVNTNPMTKQMAF-LEVVIPPDISSEETSGDMMVPEGGSAKLVCKA 162
+ +++ D G Y C+V P F L V++ P + G + G KL C+
Sbjct: 90 VTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEI--GNDFKLKCEP 147
Query: 163 KGYPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
K P + W++ + + + + + + S V+S+ + G Y C N V
Sbjct: 148 KEGSLPLQFEWQKLSDSQTM------PTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRV 201
>pdb|3JZ7|A Chain A, Crystal Structure Of The Extracellular Domains Of
Coxsackie & Adenovirus Receptor From Mouse (Mcar)
Length = 214
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 70/180 (38%), Gaps = 24/180 (13%)
Query: 58 PTDSSAMKVAWIKA-------DTKAVLAIHEHVITN-----NARLSVTHNDANTW--TLN 103
P D + + W+ + D +L + + N R+ T ND + ++N
Sbjct: 28 PEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASIN 87
Query: 104 IRSVRREDRGYYMCQVNTNPMTKQMAF-LEVVIPPDISSEETSGDMMVPEGGSAKLVCKA 162
+ +++ D G Y C+V P F L V++ P + G + G KL C+
Sbjct: 88 VTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEI--GNDFKLKCEP 145
Query: 163 KGYPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
K P + W++ + + + + + + S V+S+ + G Y C N V
Sbjct: 146 KEGSLPLQFEWQKLSDSQTM------PTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRV 199
>pdb|3EOY|G Chain G, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|H Chain H, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|I Chain I, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|J Chain J, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|K Chain K, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|L Chain L, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
Length = 104
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRRE--DNKEIIVRSNPPSSQKVFSVESEV----- 199
++ +PE KL C G+ +P++ W+ + D ++ +N ++ S E V
Sbjct: 12 EVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITA----SYEDRVTFLPT 67
Query: 200 -LSLTKVTRSEMGAYQCIAA 218
++ VTR + G Y C+ +
Sbjct: 68 GITFKSVTREDTGTYTCMVS 87
>pdb|3QIB|C Chain C, Crystal Structure Of The 2b4 Tcr In Complex With MccI-Ek
pdb|3QJF|A Chain A, Crystal Structure Of The 2b4 Tcr
pdb|3QJF|C Chain C, Crystal Structure Of The 2b4 Tcr
Length = 207
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 12/130 (9%)
Query: 41 SSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN---NARLSVTHNDA 97
S S H TG ++ ++ V W + +++ L ++ + N RL T N
Sbjct: 9 SPSALSLHEGTGSALRCNFTTTMRAVQWFQQNSRGSLINLFYLASGTKENGRLKSTFNSK 68
Query: 98 NTW-TLNIRSVRREDRGYYMCQV-----NTNPMT-KQMAFLEVVIPPDISSEETSGDMMV 150
++ TL+IR + ED G Y C N +T Q L V+ PDI + + + +
Sbjct: 69 ESYSTLHIRDAQLEDSGTYFCAALRATGGNNKLTFGQGTVLSVI--PDIQNPDPAVYQLR 126
Query: 151 PEGGSAKLVC 160
S K VC
Sbjct: 127 DSKSSDKSVC 136
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTR 207
M V EG SA+ C G P P +TW R+ V S Q + ++ V
Sbjct: 18 MTVYEGESARFSCDTDGEPVPTVTWLRKGQ----VLSTSARHQVTTTKYKSTFEISSVQA 73
Query: 208 SEMGAYQCIAAN 219
S+ G Y + N
Sbjct: 74 SDEGNYSVVVEN 85
>pdb|2IG2|H Chain H, Dir Primaerstruktur Des Kristallisierbaren Monoklonalen
Immunoglobulins Igg1 Kol. Ii. Aminosaeuresequenz Der L-
Kette, Lambda-Typ, Subgruppe I (German)
Length = 455
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 17/102 (16%)
Query: 88 ARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVNTNPMTKQMA------FLEVVIPPDIS 140
R +++ ND+ NT L + S+R ED G Y C + A + P +S
Sbjct: 66 GRFTISRNDSKNTLFLQMDSLRPEDTGVYFCARDGGHGFCSSASCFGPDYWGQGTPVTVS 125
Query: 141 SEETSGDMMVP--------EGGSAKLVCKAKGY-PTP-KITW 172
S T G + P GG+A L C K Y P P ++W
Sbjct: 126 SASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSW 167
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTR 207
M V EG SA+ C G P P +TW R+ V S Q + ++ V
Sbjct: 24 MTVYEGESARFSCDTDGEPVPTVTWLRKGQ----VLSTSARHQVTTTKYKSTFEISSVQA 79
Query: 208 SEMGAYQCIAAN 219
S+ G Y + N
Sbjct: 80 SDEGNYSVVVEN 91
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 34.3 bits (77), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 49/135 (36%), Gaps = 13/135 (9%)
Query: 100 WTLNIRSVRREDRGYYMCQVNTN----PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGS 155
W+L + SV D+G Y C V T + +E I + GG
Sbjct: 68 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGD 127
Query: 156 AKLVCKAKGYPTPKITWRR--EDNKEIIVRSNPPSSQKVFSV-------ESEVLSLTKVT 206
+ VCK P I W + E N P + + + E EVL + VT
Sbjct: 128 VEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT 187
Query: 207 RSEMGAYQCIAANGV 221
+ G Y C+A N +
Sbjct: 188 FEDAGEYTCLAGNSI 202
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 150 VPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSE 209
VP + K C A G P P + W + N + + + KV + + L + V S+
Sbjct: 23 VPAANTVKFRCPAGGNPMPTMRWLK--NGKEFKQEHRIGGYKVRN-QHWSLIMESVVPSD 79
Query: 210 MGAYQCIAAN 219
G Y C+ N
Sbjct: 80 KGNYTCVVEN 89
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 49/135 (36%), Gaps = 13/135 (9%)
Query: 100 WTLNIRSVRREDRGYYMCQVNTN----PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGS 155
W+L + SV D+G Y C V T + +E I + GG
Sbjct: 68 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGD 127
Query: 156 AKLVCKAKGYPTPKITWRR--EDNKEIIVRSNPPSSQKVFSV-------ESEVLSLTKVT 206
+ VCK P I W + E N P + + + E EVL + VT
Sbjct: 128 VEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT 187
Query: 207 RSEMGAYQCIAANGV 221
+ G Y C+A N +
Sbjct: 188 FEDAGEYTCLAGNSI 202
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 150 VPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSE 209
VP + K C A G P P + W + N + + + KV + + L + V S+
Sbjct: 23 VPAANTVKFRCPAGGNPMPTMRWLK--NGKEFKQEHRIGGYKVRN-QHWSLIMESVVPSD 79
Query: 210 MGAYQCIAAN 219
G Y C+ N
Sbjct: 80 KGNYTCVVEN 89
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 34.3 bits (77), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 53/140 (37%), Gaps = 29/140 (20%)
Query: 100 WTLNIRSVRREDRGYYMCQVNTN-------------PMTKQMAFLEVVIPPDISSEETSG 146
W+L + SV D+G Y C V ++ L+ +P + S+
Sbjct: 76 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANAST----- 130
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRR--EDNKEIIVRSNPP-----SSQKVFSVESEV 199
+V GG + VCK P I W + E N P + S +EV
Sbjct: 131 --VV--GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEV 186
Query: 200 LSLTKVTRSEMGAYQCIAAN 219
L+L VT ++ G Y C +N
Sbjct: 187 LALFNVTEADAGEYICKVSN 206
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 150 VPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSE 209
VP + K C A G P P + W + N + + + KV + + L + V S+
Sbjct: 31 VPAANTVKFRCPAGGNPMPTMRWLK--NGKEFKQEHRIGGYKVRN-QHWSLIMESVVPSD 87
Query: 210 MGAYQCIAAN 219
G Y C+ N
Sbjct: 88 KGNYTCVVEN 97
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 34.3 bits (77), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 49/135 (36%), Gaps = 13/135 (9%)
Query: 100 WTLNIRSVRREDRGYYMCQVNTN----PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGS 155
W+L + SV D+G Y C V T + +E I + GG
Sbjct: 67 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGD 126
Query: 156 AKLVCKAKGYPTPKITWRR--EDNKEIIVRSNPPSSQKVFSV-------ESEVLSLTKVT 206
+ VCK P I W + E N P + + + E EVL + VT
Sbjct: 127 VEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT 186
Query: 207 RSEMGAYQCIAANGV 221
+ G Y C+A N +
Sbjct: 187 FEDAGEYTCLAGNSI 201
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 150 VPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSE 209
VP + K C A G P P + W + N + + + KV + + L + V S+
Sbjct: 22 VPAANTVKFRCPAGGNPMPTMRWLK--NGKEFKQEHRIGGYKVRN-QHWSLIMESVVPSD 78
Query: 210 MGAYQCIAAN 219
G Y C+ N
Sbjct: 79 KGNYTCVVEN 88
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 31/144 (21%)
Query: 100 WTLNIRSVRREDRGYYMCQVNTN-------------PMTKQMAFLEVVIPPDISSEETSG 146
W+L + SV D+G Y C V ++ L+ +P + S+
Sbjct: 66 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANAST----- 120
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRR--EDNKEIIVRSNPPSSQKVFSV-------ES 197
+V GG + VCK P I W + E N P + + + E
Sbjct: 121 --VV--GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEI 176
Query: 198 EVLSLTKVTRSEMGAYQCIAANGV 221
EVL + VT + G Y C+A N +
Sbjct: 177 EVLYIRNVTFEDAGEYTCLAGNSI 200
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 150 VPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSE 209
VP + K C A G P P + W + N + + + KV + + L + V S+
Sbjct: 21 VPAANTVKFRCPAGGNPMPTMRWLK--NGKEFKQEHRIGGYKVRN-QHWSLIMESVVPSD 77
Query: 210 MGAYQCIAAN 219
G Y C+ N
Sbjct: 78 KGNYTCVVEN 87
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 34.3 bits (77), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 49/135 (36%), Gaps = 13/135 (9%)
Query: 100 WTLNIRSVRREDRGYYMCQVNTN----PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGS 155
W+L + SV D+G Y C V T + +E I + GG
Sbjct: 68 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGD 127
Query: 156 AKLVCKAKGYPTPKITWRR--EDNKEIIVRSNPPSSQKVFSV-------ESEVLSLTKVT 206
+ VCK P I W + E N P + + + E EVL + VT
Sbjct: 128 VEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT 187
Query: 207 RSEMGAYQCIAANGV 221
+ G Y C+A N +
Sbjct: 188 FEDAGEYTCLAGNSI 202
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 150 VPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSE 209
VP + K C A G P P + W + N + + + KV + + L + V S+
Sbjct: 23 VPAANTVKFRCPAGGNPMPTMRWLK--NGKEFKQEHRIGGYKVRN-QHWSLIMESVVPSD 79
Query: 210 MGAYQCIAAN 219
G Y C+ N
Sbjct: 80 KGNYTCVVEN 89
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 154 GSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAY 213
G+ L C A G P P I WR++ ++V + ++ +E+ VL + + G Y
Sbjct: 24 GTFVLSCVATGSPVPTILWRKDG---VLVSTQ---DSRIKQLENGVLQIRYAKLGDTGRY 77
Query: 214 QCIAA 218
CIA+
Sbjct: 78 TCIAS 82
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 33.9 bits (76), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE---------SEVLSLT 203
GGS +L C+A G P P+I W E + S ++ V + +S+
Sbjct: 36 GGSVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHATYHQHAASTISID 95
Query: 204 KVTRSEMGAYQCIAAN 219
+ + G Y+C A+N
Sbjct: 96 TLVEEDTGTYECRASN 111
>pdb|3RNQ|B Chain B, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Pd-L2
Length = 201
Score = 33.9 bits (76), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 102 LNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCK 161
+I SV+ D G Y C V +L V + +T + VP G +L C+
Sbjct: 68 FHIPSVQVRDSGQYRCLVICG-AAWDYKYLTVKVKASYMRIDTR-ILEVPGTGEVQLTCQ 125
Query: 162 AKGYPTPKITWR 173
A+GYP +++W+
Sbjct: 126 ARGYPLAEVSWQ 137
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 33.9 bits (76), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 155 SAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQ 214
+A LVCK G+P P + W R+ KEII Q+ F L + VT + YQ
Sbjct: 21 NATLVCKVTGHPKPIVKWYRQ-GKEIIADGLKYRIQE-FKGGYHQLIIASVTDDDATVYQ 78
Query: 215 CIAAN 219
A N
Sbjct: 79 VRATN 83
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 48/131 (36%), Gaps = 11/131 (8%)
Query: 100 WTLNIRSVRREDRGYYMCQVNTN----PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGS 155
W+L + SV D+G Y C V T + +E I + GG
Sbjct: 76 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGD 135
Query: 156 AKLVCKAKGYPTPKITWRR--EDNKEIIVRSNPP-----SSQKVFSVESEVLSLTKVTRS 208
+ VCK P I W + E N P + S +EVL+L VT +
Sbjct: 136 VEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEA 195
Query: 209 EMGAYQCIAAN 219
+ G Y C +N
Sbjct: 196 DAGEYICKVSN 206
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 33.9 bits (76), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 96 DANTWTLNIRSVRREDRGYYMCQVNTNPMTK--QMAFLEVVIPPD--------------- 138
+ NT L +V +D G+Y+C+VN N + Q + L+V P+
Sbjct: 61 NGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQ 120
Query: 139 ISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRRED 176
I E TS +M G + L C A G P P W + +
Sbjct: 121 ICVEPTSQKLM--PGSTLVLQCVAVGSPIPHYQWFKNE 156
>pdb|2Q3A|A Chain A, Crystal Structure Of Rhesus Macaque Cd8 Alpha-Alpha
Homodimer
pdb|2Q3A|B Chain B, Crystal Structure Of Rhesus Macaque Cd8 Alpha-Alpha
Homodimer
Length = 120
Score = 33.9 bits (76), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 97 ANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIP 136
+T+ L +R R+E+ GYY C +N + F+ V +P
Sbjct: 74 GDTFVLTLRDFRQENEGYYFCSALSNSIMYFSHFVPVFLP 113
>pdb|3BP5|B Chain B, Crystal Structure Of The Mouse Pd-1 And Pd-L2 Complex
pdb|3BP6|B Chain B, Crystal Structure Of The Mouse Pd-1 Mutant And Pd-L2
Complex
Length = 202
Score = 33.9 bits (76), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 102 LNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCK 161
+I SV+ D G Y C V +L V + +T + VP G +L C+
Sbjct: 69 FHIPSVQVRDSGQYRCLVICG-AAWDYKYLTVKVKASYMRIDTR-ILEVPGTGEVQLTCQ 126
Query: 162 AKGYPTPKITWR 173
A+GYP +++W+
Sbjct: 127 ARGYPLAEVSWQ 138
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 33.5 bits (75), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 48/135 (35%), Gaps = 13/135 (9%)
Query: 100 WTLNIRSVRREDRGYYMCQVNTN----PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGS 155
W+L SV D+G Y C V T + +E I + GG
Sbjct: 68 WSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGD 127
Query: 156 AKLVCKAKGYPTPKITWRR--EDNKEIIVRSNPPSSQKVFSV-------ESEVLSLTKVT 206
+ VCK P I W + E N P + + + E EVL + VT
Sbjct: 128 VEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT 187
Query: 207 RSEMGAYQCIAANGV 221
+ G Y C+A N +
Sbjct: 188 FEDAGEYTCLAGNSI 202
>pdb|1FRG|H Chain H, Crystal Structure, Sequence, And Epitope Mapping Of A
Peptide Complex Of An Anti-Influenza Ha Peptide Antibody
Fab 26(Slash)9: Fine-Tuning Antibody Specificity
Length = 220
Score = 33.5 bits (75), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 87 NARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETS 145
R +++ ++A NT L + S++ ED G Y C K A+ +S+ +T+
Sbjct: 65 KGRFTISRDNAKNTLFLEMTSLKSEDAGLYYCARRERYDEKGFAYWGRGTLVTVSAAKTT 124
Query: 146 GDMMVP--------EGGSAKLVCKAKGY-PTP-KITW 172
+ P G S L C KGY P P +TW
Sbjct: 125 APSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTW 161
>pdb|2XA8|H Chain H, Crystal Structure Of The Fab Domain Of Omalizumab At 2.41a
Length = 219
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 14/149 (9%)
Query: 36 GGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHN 95
G R+S +V+ + +G S + + + W+ + T + + R++++ +
Sbjct: 16 GSLRLSCAVSGYSITSGYSWNWIRQAPGKGLEWVASITYDGSTNYNPSV--KGRITISRD 73
Query: 96 DA-NTWTLNIRSVRREDRGYYMCQVNTNPMTK-QMAFLEVVIPPDISSEETSGDMMVP-- 151
D+ NT+ L + S+R ED Y C ++ A +SS T G + P
Sbjct: 74 DSKNTFYLQMNSLRAEDTAVYYCARGSHYFGHWHFAVWGQGTLVTVSSASTKGPSVFPLA 133
Query: 152 ------EGGSAKLVCKAKGY-PTP-KITW 172
GG+A L C K Y P P ++W
Sbjct: 134 PSSKSTSGGTAALGCLVKDYFPEPVTVSW 162
>pdb|1CD8|A Chain A, Crystal Structure Of A Soluble Form Of The Human T Cell
Co- Receptor Cd8 At 2.6 Angstroms Resolution
pdb|3QZW|G Chain G, Plasticity Of Human Cd8 Binding To Peptide-Hla-A2402
pdb|3QZW|H Chain H, Plasticity Of Human Cd8 Binding To Peptide-Hla-A2402
pdb|3QZW|I Chain I, Plasticity Of Human Cd8 Binding To Peptide-Hla-A2402
pdb|3QZW|J Chain J, Plasticity Of Human Cd8 Binding To Peptide-Hla-A2402
Length = 114
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 97 ANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIP 136
+T+ L + RRE+ GYY C +N + F+ V +P
Sbjct: 74 GDTFVLTLSDFRRENEGYYFCSALSNSIMYFSHFVPVFLP 113
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 154 GSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAY 213
G+A L CKA G P P I+W +E + P + E L + + S+ G Y
Sbjct: 24 GTALLKCKATGDPLPVISWLKEG------FTFPGRDPRATIQEQGTLQIKNLRISDTGTY 77
Query: 214 QCIAAN 219
C+A +
Sbjct: 78 TCVATS 83
>pdb|1AKJ|D Chain D, Complex Of The Human Mhc Class I Glycoprotein Hla-A2 And
The T Cell Coreceptor Cd8
pdb|1AKJ|E Chain E, Complex Of The Human Mhc Class I Glycoprotein Hla-A2 And
The T Cell Coreceptor Cd8
Length = 120
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 97 ANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIP 136
+T+ L + RRE+ GYY C +N + F+ V +P
Sbjct: 74 GDTFVLTLSDFRRENEGYYFCSALSNSIMYFSHFVPVFLP 113
>pdb|2HP4|A Chain A, Computational Design And Crystal Structure Of An Enhanced
Affinity Mutant Human Cd8-Alpha-Alpha Co-Receptor
pdb|2HP4|B Chain B, Computational Design And Crystal Structure Of An Enhanced
Affinity Mutant Human Cd8-Alpha-Alpha Co-Receptor
Length = 114
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 97 ANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIP 136
+T+ L + RRE+ GYY C +N + F+ V +P
Sbjct: 74 GDTFVLTLSDFRRENEGYYFCSALSNSIMYFSHFVPVFLP 113
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVES-EVLSLTKVTRSEM 210
EG + C+ YP+ I+W R+ ++ S+ S+ K+++ S L +T + ++
Sbjct: 32 EGNQVNITCEVFAYPSATISWFRDGQ---LLPSSNYSNIKIYNTPSASYLEVTPDSENDF 88
Query: 211 GAYQCIAAN 219
G Y C A N
Sbjct: 89 GNYNCTAVN 97
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE---------SEVLSLT 203
GGS +L C+A G P P+I W E + S ++ V + +S+
Sbjct: 36 GGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISID 95
Query: 204 KVTRSEMGAYQCIAAN 219
+ + G Y+C A+N
Sbjct: 96 TLVEEDTGTYECRASN 111
>pdb|2ZCK|H Chain H, Crystal Structure Of A Ternary Complex Between Psa, A
Substrat-Acyl Intermediate And An Activating Antibody
pdb|2ZCL|H Chain H, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
Length = 230
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 19/96 (19%)
Query: 143 ETSGDMMVPEGGSAKLVCKAKGY--PTPKITWRRE---DNKEIIVRSNPPS----SQKVF 193
+ SGD +V G S KL CKA GY T I W R+ E I R P S S ++F
Sbjct: 5 QQSGDDLVKPGASVKLSCKASGYTFTTYYINWMRQRPGQGLEWIGRIAPASGTTYSSEMF 64
Query: 194 ----------SVESEVLSLTKVTRSEMGAYQCIAAN 219
S + + L+ ++ + Y C A+
Sbjct: 65 KDKATLTVDTSSNTAYIQLSSLSSEDSAVYFCARAD 100
>pdb|2ZCH|H Chain H, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
Length = 229
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 19/96 (19%)
Query: 143 ETSGDMMVPEGGSAKLVCKAKGY--PTPKITWRRE---DNKEIIVRSNPPS----SQKVF 193
+ SGD +V G S KL CKA GY T I W R+ E I R P S S ++F
Sbjct: 5 QQSGDDLVKPGASVKLSCKASGYTFTTYYINWMRQRPGQGLEWIGRIAPASGTTYSSEMF 64
Query: 194 ----------SVESEVLSLTKVTRSEMGAYQCIAAN 219
S + + L+ ++ + Y C A+
Sbjct: 65 KDKATLTVDTSSNTAYIQLSSLSSEDSAVYFCARAD 100
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 19/129 (14%)
Query: 104 IRSVRREDRGYYMCQ--VNTNPMTKQMAFLEV----VIPPDISSEETSGDMMVPEGGSAK 157
IR + D Y+C+ VN T +L+V PP I E + ++ G +A+
Sbjct: 148 IRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSK--LVRIRGEAAQ 205
Query: 158 LVCKAK----GYPTPKITWRREDNK-EIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGA 212
+VC A G+ + +R D K EI + S+ Q + + LSL V + G
Sbjct: 206 IVCSATNAEVGF---NVILKRGDTKLEIPLNSD---FQDNYYKKVRALSLNAVDFQDAGI 259
Query: 213 YQCIAANGV 221
Y C+A+N V
Sbjct: 260 YSCVASNDV 268
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 47/131 (35%), Gaps = 11/131 (8%)
Query: 100 WTLNIRSVRREDRGYYMCQVNTN----PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGS 155
W+L SV D+G Y C V T + +E I + GG
Sbjct: 75 WSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGD 134
Query: 156 AKLVCKAKGYPTPKITWRR--EDNKEIIVRSNPP-----SSQKVFSVESEVLSLTKVTRS 208
+ VCK P I W + E N P + S +EVL+L VT +
Sbjct: 135 VEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEA 194
Query: 209 EMGAYQCIAAN 219
+ G Y C +N
Sbjct: 195 DAGEYICKVSN 205
>pdb|3EJJ|X Chain X, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 289
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 19/129 (14%)
Query: 104 IRSVRREDRGYYMCQ--VNTNPMTKQMAFLEV----VIPPDISSEETSGDMMVPEGGSAK 157
IR + D Y+C+ VN T +L+V PP I E + ++ G +A+
Sbjct: 148 IRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSK--LVRIRGEAAQ 205
Query: 158 LVCKAK----GYPTPKITWRREDNK-EIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGA 212
+VC A G+ + +R D K EI + S+ Q + + LSL V + G
Sbjct: 206 IVCSATNAEVGF---NVILKRGDTKLEIPLNSD---FQDNYYKKVRALSLNAVDFQDAGI 259
Query: 213 YQCIAANGV 221
Y C+A+N V
Sbjct: 260 YSCVASNDV 268
>pdb|2NCM|A Chain A, Neural Cell Adhesion Molecule, Nmr, 20 Structures
Length = 99
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 81 EHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVI 135
E + N R+SV ND ++ TL I + +D G Y C V T+ A + V I
Sbjct: 43 EKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI 97
>pdb|3H49|A Chain A, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3H49|B Chain B, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3IN1|A Chain A, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
pdb|3IN1|B Chain B, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
Length = 325
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD 72
YPLE + G DAI + + GHR + G I+ + + +K D
Sbjct: 33 YPLERIAXTTGGDAINEATIISRLGHRTALXSRIGKDAAGQFILDHCRKENIDIQSLKQD 92
Query: 73 TKAVLAIHEHVITNNA-RLSVTHNDANTWTLNIRSV 107
+I+ ++T + R VT+ + + W LNI V
Sbjct: 93 VSIDTSINVGLVTEDGERTFVTNRNGSLWKLNIDDV 128
>pdb|1IGC|H Chain H, Igg1 Fab Fragment (Mopc21) Complex With Domain Iii Of
Protein G From Streptococcus
Length = 222
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 12/118 (10%)
Query: 66 VAWIKADTKAVLAIHEHVITNNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNPM 124
+ W+ + +H + T R +++ N NT L + S+R ED G Y C N
Sbjct: 45 LEWVAYISSGSSTLH-YADTVKGRFTISRDNPKNTLFLQMTSLRSEDTGMYYCARWGNYP 103
Query: 125 TKQMAFLEVVIPPDISSEETSGDMMVP--EGGSAK------LVCKAKGY-PTP-KITW 172
M + +SS +T+ + P G +A+ L C KGY P P +TW
Sbjct: 104 YYAMDYWGQGTSVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTW 161
>pdb|1YY8|A Chain A, Crystal Structure Of The Fab Fragment From The Monoclonal
Antibody CetuximabERBITUXIMC-C225
pdb|1YY8|C Chain C, Crystal Structure Of The Fab Fragment From The Monoclonal
Antibody CetuximabERBITUXIMC-C225
pdb|1YY9|C Chain C, Structure Of The Extracellular Domain Of The Epidermal
Growth Factor Receptor In Complex With The Fab Fragment
Of Cetuximab/erbitux/imc- C225
Length = 213
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 19/144 (13%)
Query: 100 WTLNIRSVRREDRGYYMCQVNTN-PMT----KQMAFLEVVIPPDISSEETSGDMMVPEGG 154
+TL+I SV ED Y CQ N N P T ++ V P + S + + + G
Sbjct: 71 FTLSINSVESEDIADYYCQQNNNWPTTFGAGTKLELKRTVAAPSVFIFPPSDEQL--KSG 128
Query: 155 SAKLVCKAKG-YP-TPKITWRRE------DNKEIIVRSNPPSSQKVFSVESEVLSLTKVT 206
+A +VC YP K+ W+ + +++E + + S +S+ S L+L+K
Sbjct: 129 TASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQD--SKDSTYSL-SSTLTLSKAD 185
Query: 207 RSEMGAYQC-IAANGVPPTVSKRL 229
+ Y C + G+ V+K
Sbjct: 186 YEKHKVYACEVTHQGLSSPVTKSF 209
>pdb|3UCR|A Chain A, Crystal Structure Of The Immunoreceptor Tigit Igv Domain
pdb|3UCR|B Chain B, Crystal Structure Of The Immunoreceptor Tigit Igv Domain
pdb|3UCR|C Chain C, Crystal Structure Of The Immunoreceptor Tigit Igv Domain
pdb|3UCR|D Chain D, Crystal Structure Of The Immunoreceptor Tigit Igv Domain
Length = 110
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 143 ETSGDMMVPEGGSAKLVC--KAKGYPTPKITWRRED------NKEIIVRSNPPSSQKVFS 194
ET+G++ +GGS L C + ++ W ++D N ++ +P +V
Sbjct: 10 ETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAP 69
Query: 195 VESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
L+L +T ++ G Y CI T + R+ L V
Sbjct: 70 GPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEV 108
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 126 KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN 185
+Q+ LE V P + E + G S ++ C A G P P+I W + DN+ ++
Sbjct: 1 RQLTVLERVAPTITGNLENQTTSI---GESIEVSCTASGNPPPQIMWFK-DNETLV---- 52
Query: 186 PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
S V + L++ +V + + G Y C A +
Sbjct: 53 -EDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACS 85
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 102 LNIRSVRREDRGYYMCQ 118
L IR VR+ED G Y CQ
Sbjct: 66 LTIRRVRKEDEGLYTCQ 82
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG 211
EG C+ G P PKI W + D K+I +S+ + Q+ L T T + G
Sbjct: 21 EGMPVTFTCRVAGNPKPKIYWFK-DGKQISPKSDHYTIQRDLDGTCS-LHTTASTLDDDG 78
Query: 212 AYQCIAAN 219
Y +AAN
Sbjct: 79 NYTIMAAN 86
>pdb|4DZB|B Chain B, Mucosal-Associated Invariant T Cell Receptor,
Valpha7.2jalpha33-Vbeta2
Length = 246
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Query: 78 AIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAF------- 130
A +E + + L + H TL + S ED +Y+C T+ + F
Sbjct: 56 ATYEQGVEKDKFL-INHASLTLSTLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLT 114
Query: 131 ----LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY 165
L+ V PP+++ E S + + A LVC A G+
Sbjct: 115 VLEDLKNVFPPEVAVFEPS-EAEISHTQKATLVCLATGF 152
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 17/80 (21%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITW-------RREDNKEIIVRSNPPSSQKVFSVESEV 199
+M + EG ++ K G P P ++W + +D ++IV S + + S+ EV
Sbjct: 14 NMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIV-----SEKGLHSLIFEV 68
Query: 200 LSLTKVTRSEMGAYQCIAAN 219
V S+ GAY C+A N
Sbjct: 69 -----VRASDAGAYACVAKN 83
>pdb|2OCW|A Chain A, Solution Structure Of Human Secretory Component
pdb|3CHN|S Chain S, Solution Structure Of Human Secretory Iga1
pdb|3CM9|S Chain S, Solution Structure Of Human Siga2
Length = 585
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 17/145 (11%)
Query: 85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT-KQMAFLEVVIP-PDISSE 142
T RL + +++ I +R D G Y+CQ + + K+ A L+V+ P P++ E
Sbjct: 170 TGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYE 229
Query: 143 ETSGDM-----MVPE-GGSAKLVCKAKGYPTPKIT----WRREDNKEIIVRSNPPSSQKV 192
+ G + + PE AK +C+ + +R E + NP
Sbjct: 230 DLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGS 289
Query: 193 FSVESEVLSLTKVTRSEMGAYQCIA 217
FSV +T + + + G Y C A
Sbjct: 290 FSV-----VITGLRKEDAGRYLCGA 309
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 20/146 (13%)
Query: 88 ARLSVTHNDAN-TWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVV-------IPPDI 139
RLS+ N T+T+ + + D G+Y C N + + + ++++ +P ++
Sbjct: 393 GRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNV 452
Query: 140 SS--EETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVES 197
++ ET + VP CK Y W + + + PS V E+
Sbjct: 453 TAVLGET---LKVP----CHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDEN 505
Query: 198 E---VLSLTKVTRSEMGAYQCIAANG 220
L+L VTR++ G Y C G
Sbjct: 506 SRLVSLTLNLVTRADEGWYWCGVKQG 531
>pdb|1HKF|A Chain A, The Three Dimensional Structure Of Nk Cell Receptor Nkp44,
A Triggering Partner In Natural Cytotoxicity
Length = 122
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 58 PTDSSAMKVAWIKADT-----KAVLAIHEHVITNNARLSVTHN-DANTWTLNIRSVRRED 111
PT S K W K + + V + + +R ++ + DA +T+ + +R ED
Sbjct: 36 PTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREED 95
Query: 112 RGYYMCQV---NTNPMTKQMAFLEVV 134
G+Y C++ + N ++K + F VV
Sbjct: 96 SGHYWCRIYRPSDNSVSKSVRFYLVV 121
>pdb|3UDW|A Chain A, Crystal Structure Of The Immunoreceptor Tigit In Complex
With Poliovirus Receptor (PvrCD155NECL-5) D1 Domain
pdb|3UDW|B Chain B, Crystal Structure Of The Immunoreceptor Tigit In Complex
With Poliovirus Receptor (PvrCD155NECL-5) D1 Domain
Length = 110
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 143 ETSGDMMVPEGGSAKLVC--KAKGYPTPKITWRRED------NKEIIVRSNPPSSQKVFS 194
ET+G++ +GGS L C + ++ W ++D N ++ +P +V
Sbjct: 10 ETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAP 69
Query: 195 VESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
L+L +T ++ G Y CI T + R+ L V
Sbjct: 70 GPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEV 108
>pdb|1OPG|L Chain L, Opg2 Fab Fragment
pdb|1BM3|L Chain L, Immunoglobulin Opg2 Fab-Peptide Complex
Length = 214
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 14/129 (10%)
Query: 100 WTLNIRSVRREDRGYYMC-QVNTNPMT----KQMAFLEVVIPPDISSEETSGDMMVPEGG 154
+TL+I SV ED G Y C Q N+ P+T ++ P +S S + + G
Sbjct: 71 FTLSINSVETEDFGMYFCQQSNSWPLTFGGGSKLEIKRADAAPTVSIFPPSSEQLT--SG 128
Query: 155 SAKLVCKAKG-YPTP-----KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS 208
A +VC YP KI N + ++ S +S+ S L+LTK
Sbjct: 129 GASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM-SSTLTLTKDEYE 187
Query: 209 EMGAYQCIA 217
+Y C A
Sbjct: 188 RHNSYTCEA 196
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG 211
EG C+ G P PKI W + D K+I +S+ + Q+ L T T + G
Sbjct: 22 EGMPVTFTCRVAGNPKPKIYWFK-DGKQISPKSDHYTIQRDLDGTCS-LHTTASTLDDDG 79
Query: 212 AYQCIAAN 219
Y +AAN
Sbjct: 80 NYTIMAAN 87
>pdb|2ZCH|L Chain L, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
Length = 215
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 15/141 (10%)
Query: 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMC-QVNTNPMT----KQMAFLEVVIPPDISSE 142
ARLS + + + +TLNI+ V ED Y C Q N +P T ++ P +S
Sbjct: 64 ARLSGSGSGTD-FTLNIQPVEEEDAATYYCQQSNEDPYTFGGGTKLEIKRADAAPTVSIF 122
Query: 143 ETSGDMMVPEGGSAKLVCKAKG-YPTP-----KITWRREDNKEIIVRSNPPSSQKVFSVE 196
S + + G A +VC YP KI N + ++ S +S+
Sbjct: 123 PPSSEQLT--SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM- 179
Query: 197 SEVLSLTKVTRSEMGAYQCIA 217
S L+LTK +Y C A
Sbjct: 180 SSTLTLTKDEYERHNSYTCEA 200
>pdb|2ZCK|L Chain L, Crystal Structure Of A Ternary Complex Between Psa, A
Substrat-Acyl Intermediate And An Activating Antibody
pdb|2ZCL|L Chain L, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
Length = 218
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 15/141 (10%)
Query: 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMC-QVNTNPMT----KQMAFLEVVIPPDISSE 142
ARLS + + + +TLNI+ V ED Y C Q N +P T ++ P +S
Sbjct: 64 ARLSGSGSGTD-FTLNIQPVEEEDAATYYCQQSNEDPYTFGGGTKLEIKRADAAPTVSIF 122
Query: 143 ETSGDMMVPEGGSAKLVCKAKG-YPTP-----KITWRREDNKEIIVRSNPPSSQKVFSVE 196
S + + G A +VC YP KI N + ++ S +S+
Sbjct: 123 PPSSEQLT--SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM- 179
Query: 197 SEVLSLTKVTRSEMGAYQCIA 217
S L+LTK +Y C A
Sbjct: 180 SSTLTLTKDEYERHNSYTCEA 200
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 135 IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITW 172
IPP I E D+ + EG + C G PTP++TW
Sbjct: 6 IPPKI--EALPSDISIDEGKVLTVACAFTGEPTPEVTW 41
>pdb|1FH5|L Chain L, Crystal Structure Of The Fab Fragment Of The Monoclonal
Antibody Mak33
Length = 213
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 14/129 (10%)
Query: 100 WTLNIRSVRREDRGYYMC-QVNTNPMT----KQMAFLEVVIPPDISSEETSGDMMVPEGG 154
+TL+I SV ED G Y C Q N+ P+T ++ P +S S + + G
Sbjct: 71 FTLSINSVETEDFGMYYCQQSNSWPLTFGAGTKLELKRADAAPTVSIFPPSSEQLT--SG 128
Query: 155 SAKLVCKAKG-YPTP-----KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS 208
A +VC YP KI N + ++ S +S+ S L+LTK
Sbjct: 129 GASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM-SSTLTLTKDEYE 187
Query: 209 EMGAYQCIA 217
+Y C A
Sbjct: 188 RHNSYTCEA 196
>pdb|3RQ3|A Chain A, Structure Of T-Cell Immunoreceptor With Immunoglobulin And
Itim Domains (Tigit) In Hexagonal Crystal Form
pdb|3RQ3|B Chain B, Structure Of T-Cell Immunoreceptor With Immunoglobulin And
Itim Domains (Tigit) In Hexagonal Crystal Form
Length = 116
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 143 ETSGDMMVPEGGSAKLVC--KAKGYPTPKITWRRED------NKEIIVRSNPPSSQKVFS 194
ET+G++ +GGS L C + ++ W ++D N ++ +P +V
Sbjct: 7 ETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAP 66
Query: 195 VESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
L+L +T ++ G Y CI T + R+ L V
Sbjct: 67 GPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEV 105
>pdb|3Q0H|A Chain A, Structure Of T-Cell Immunoreceptor With Immunoglobulin And
Itim Domains (Tigit)
pdb|3Q0H|B Chain B, Structure Of T-Cell Immunoreceptor With Immunoglobulin And
Itim Domains (Tigit)
Length = 117
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 143 ETSGDMMVPEGGSAKLVC--KAKGYPTPKITWRRED------NKEIIVRSNPPSSQKVFS 194
ET+G++ +GGS L C + ++ W ++D N ++ +P +V
Sbjct: 8 ETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAP 67
Query: 195 VESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
L+L +T ++ G Y CI T + R+ L V
Sbjct: 68 GPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEV 106
>pdb|1ZA3|A Chain A, The Crystal Structure Of The Ysd1 Fab Bound To Dr5
pdb|1ZA3|L Chain L, The Crystal Structure Of The Ysd1 Fab Bound To Dr5
Length = 213
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 18/143 (12%)
Query: 100 WTLNIRSVRREDRGYYMCQVNTNPMT----KQMAFLEVVIPPDISSEETSGDMMVPEGGS 155
+TL I S++ ED Y CQ +++P T ++ V P + S + + + G+
Sbjct: 71 FTLTISSLQPEDFATYYCQSSSSPYTFGQGTKVEIKRTVAAPSVFIFPPSDEQL--KSGT 128
Query: 156 AKLVCKAKG-YP-TPKITWRRE------DNKEIIVRSNPPSSQKVFSVESEVLSLTKVTR 207
A +VC YP K+ W+ + +++E + + S +S+ S L+L+K
Sbjct: 129 ASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQD--SKDSTYSL-SSTLTLSKADY 185
Query: 208 SEMGAYQC-IAANGVPPTVSKRL 229
+ Y C + G+ V+K
Sbjct: 186 EKHKVYACEVTHQGLSSPVTKSF 208
>pdb|1QFU|H Chain H, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
Length = 223
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 146 GDMMVPEGGSAKLVCKAKGY--PTPKITW---RREDNKEIIVRSNPPSSQKVFSVESEVL 200
G +V G S KL CKA GY T + W R + E I R +P S+ ++ + +
Sbjct: 8 GAELVRPGASVKLSCKASGYTLTTYWMNWFKQRPDQGLEWIGRIDPYDSETHYNQKFKDK 67
Query: 201 SLTKVTRSEMGAYQCIAA 218
++ V RS AY +++
Sbjct: 68 AILTVDRSSSTAYMQLSS 85
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 150 VPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSE 209
V EG S KL C+ P PK+ W+R N E++ + S + L + V + +
Sbjct: 27 VLEGDSVKLECQISAIPPPKLFWKR--NNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKD 84
Query: 210 MGAYQCIAAN 219
G Y A N
Sbjct: 85 AGWYTVSAVN 94
>pdb|3M45|A Chain A, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|B Chain B, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|C Chain C, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|D Chain D, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
Length = 108
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 30/135 (22%)
Query: 4 VRGFEPDFLYPL-ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSS 62
V+G + F PL +NVT+ +G AI TC V+ + S N ++ D
Sbjct: 3 VKGSQGQF--PLTQNVTVVEGGTAILTCRVDQNDNTSLQWS------NPAQQTLYFDDKK 54
Query: 63 AMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122
A++ + R+ + + ++++ V D G Y C + T
Sbjct: 55 ALR---------------------DNRIELVRASWHELSISVSDVSLSDEGQYTCSLFTM 93
Query: 123 PMTKQMAFLEVVIPP 137
P+ A+L V+ P
Sbjct: 94 PVKTSKAYLTVLGVP 108
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 135 IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITW 172
IPP I E D+ + EG + C G PTP++TW
Sbjct: 4 IPPKI--EALPSDISIDEGKVLTVACAFTGEPTPEVTW 39
>pdb|3PV6|A Chain A, Crystal Structure Of Nkp30 Bound To Its Ligand B7-H6
pdb|3PV7|A Chain A, Crystal Structure Of Nkp30 Ligand B7-H6
Length = 248
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 66/179 (36%), Gaps = 24/179 (13%)
Query: 58 PTDSSAMKVAWI--------KADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRR 109
P + ++M + W + H+ A +S + +L + ++
Sbjct: 32 PLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQL 91
Query: 110 EDRGYYMCQVNTNPMTKQMAF-LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPT 167
E+ G Y C+V P+ Q LEVV P + D + + K +C++ G YP
Sbjct: 92 EEAGEYRCEVVVTPLKAQGTVQLEVVASP---ASRLLLDQVGMKENEDKYMCESSGFYPE 148
Query: 168 P-KITWRREDNK---------EIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCI 216
ITW ++ K ++I + F+V S L L YQC+
Sbjct: 149 AINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTS-CLKLNSSQEDPGTVYQCV 206
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 52/147 (35%), Gaps = 13/147 (8%)
Query: 100 WTLNIRSVRREDRGYYMCQVNTN----PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGS 155
W+L + SV DRG Y C V T + LE I + G
Sbjct: 72 WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSD 131
Query: 156 AKLVCKAKGYPTPKITWRR--EDNKEIIVRSNPP-----SSQKVFSVESEV-LSLTKVTR 207
+ CK P I W + E N + P S SVE++V L L V+
Sbjct: 132 VEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSE 191
Query: 208 SEMGAYQCIAANGVPPTVSKRLMLHVH 234
+ G Y C A N + K L VH
Sbjct: 192 RDGGEYLCRATNFI-GVAEKAFWLSVH 217
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTR 207
+ VP + + C A G PTP I+W + + R + L + V
Sbjct: 25 LAVPAANTVRFRCPAAGNPTPSISWLKNGRE---FRGEHRIGGIKLRHQQWSLVMESVVP 81
Query: 208 SEMGAYQCIAAN 219
S+ G Y C+ N
Sbjct: 82 SDRGNYTCVVEN 93
>pdb|3O6F|D Chain D, Crystal Structure Of A Human Autoimmune Tcr Ms2-3c8 Bound
To Mhc Class Ii Self-Ligand MbpHLA-Dr4
pdb|3O6F|H Chain H, Crystal Structure Of A Human Autoimmune Tcr Ms2-3c8 Bound
To Mhc Class Ii Self-Ligand MbpHLA-Dr4
pdb|3T0E|D Chain D, Crystal Structure Of A Complete Ternary Complex Of T Cell
Receptor, Peptide-Mhc And Cd4
Length = 245
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 19/96 (19%)
Query: 81 EHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAF---------- 130
+ + N+A L+++ TL + S ED +Y+C + F
Sbjct: 63 DKFLINHASLTLS-------TLTVTSAHPEDSSFYICSARGGSYNSPLHFGNGTRLTVTE 115
Query: 131 -LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY 165
L+ V PP+++ E S + + A LVC A G+
Sbjct: 116 DLKNVFPPEVAVFEPS-EAEISHTQKATLVCLATGF 150
>pdb|3NZH|H Chain H, Crystal Structure Of Anti-Emmprin Antibody 5f6 Fab
Length = 226
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 17/96 (17%)
Query: 88 ARLSVTHNDANTWT-LNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSG 146
R +++ +D+ + L + ++R ED G Y C + + Q L V SS T G
Sbjct: 69 GRFTISRDDSKSSVYLQMNNLRAEDTGIYYCTPDGSDYWGQGTTLTV------SSASTKG 122
Query: 147 DMMVP--------EGGSAKLVCKAKGY-PTP-KITW 172
+ P GG+A L C K Y P P ++W
Sbjct: 123 PSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW 158
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 11/77 (14%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEV--LSLTK 204
D V EG L C +G P P+ITW RS + E+ V L +
Sbjct: 20 DCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS---------TCEAGVAELHIQD 70
Query: 205 VTRSEMGAYQCIAANGV 221
+ G Y C+A N +
Sbjct: 71 ALPEDHGTYTCLAENAL 87
>pdb|3QG6|B Chain B, Structural Basis For Ligand Recognition And Discrimination
Of A Quorum Quenching Antibody
pdb|3QG6|H Chain H, Structural Basis For Ligand Recognition And Discrimination
Of A Quorum Quenching Antibody
pdb|3QG7|H Chain H, Structural Basis For Ligand Recognition And Discrimination
Of A Quorum Quenching Antibody
Length = 213
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 18/96 (18%)
Query: 88 ARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSG 146
+R S+T + + N + L + SV ED G Y C T++ + +SS +T+
Sbjct: 66 SRFSITRDTSKNQFFLQLHSVTIEDTGTYFC-------TREGDYWGQGTTLTVSSAKTTA 118
Query: 147 DMMVP--------EGGSAKLVCKAKGY-PTP-KITW 172
+ P G S L C KGY P P +TW
Sbjct: 119 PSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTW 154
>pdb|4FA8|A Chain A, Multi-Pronged Modulation Of Cytokine Signaling
pdb|4FA8|B Chain B, Multi-Pronged Modulation Of Cytokine Signaling
pdb|4FA8|D Chain D, Multi-Pronged Modulation Of Cytokine Signaling
Length = 203
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 94 HNDANTWTLNIRSVRREDRGYYMC--QVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVP 151
H ANT+ L + + G Y+C ++ +TKQ L VV P +S P
Sbjct: 63 HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQ-EHLSVVKPLTLSVHSERSQF--P 119
Query: 152 EGGSAKLVCKAKGYPTPKITWRREDNKE 179
+ + C +P P + W + E
Sbjct: 120 DFSVLTVTCTVNAFPHPHVQWLMPEGVE 147
>pdb|2CH8|A Chain A, Structure Of The Epstein-barr Virus Oncogene Barf1
pdb|2CH8|B Chain B, Structure Of The Epstein-barr Virus Oncogene Barf1
pdb|2CH8|C Chain C, Structure Of The Epstein-barr Virus Oncogene Barf1
pdb|2CH8|D Chain D, Structure Of The Epstein-barr Virus Oncogene Barf1
Length = 201
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 94 HNDANTWTLNIRSVRREDRGYYMC--QVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVP 151
H ANT+ L + + G Y+C ++ +TKQ L VV P +S P
Sbjct: 61 HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQ-EHLSVVKPLTLSVHSERSQF--P 117
Query: 152 EGGSAKLVCKAKGYPTPKITWRREDNKE 179
+ + C +P P + W + E
Sbjct: 118 DFSVLTVTCTVNAFPHPHVQWLMPEGVE 145
>pdb|1RIH|L Chain L, Crystal Structure Of Fab 14f7, A Unique Anti-Tumor
Antibody Specific For N-Glycolyl Gm3
Length = 214
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 52/129 (40%), Gaps = 14/129 (10%)
Query: 100 WTLNIRSVRREDRGYYMC-QVNTNPMT----KQMAFLEVVIPPDISSEETSGDMMVPEGG 154
+TL+I SV ED G Y C Q N P+T ++ P +S S + + G
Sbjct: 71 FTLSISSVETEDFGMYFCQQSNRWPLTFGAGTKLELKRADAAPTVSIFPPSSEQLT--SG 128
Query: 155 SAKLVCKAKG-YPTP-----KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS 208
A +VC YP KI N + ++ S +S+ S L+LTK
Sbjct: 129 GASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM-SSTLTLTKDEYE 187
Query: 209 EMGAYQCIA 217
+Y C A
Sbjct: 188 RHNSYTCEA 196
>pdb|3UEZ|A Chain A, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|3UEZ|B Chain B, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|3UEZ|C Chain C, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|3UEZ|D Chain D, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|A Chain A, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|B Chain B, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|C Chain C, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|D Chain D, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|E Chain E, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|F Chain F, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|M Chain M, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|N Chain N, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|O Chain O, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|P Chain P, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|Q Chain Q, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|R Chain R, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADQ|A Chain A, Crystal Structure Of The Mouse Colony-Stimulating Factor 1
(Mcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADQ|B Chain B, Crystal Structure Of The Mouse Colony-Stimulating Factor 1
(Mcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADQ|C Chain C, Crystal Structure Of The Mouse Colony-Stimulating Factor 1
(Mcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADQ|D Chain D, Crystal Structure Of The Mouse Colony-Stimulating Factor 1
(Mcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
Length = 208
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 94 HNDANTWTLNIRSVRREDRGYYMC--QVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVP 151
H ANT+ L + + G Y+C ++ +TKQ L VV P +S P
Sbjct: 61 HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQ-EHLSVVKPLTLSVHSERSQF--P 117
Query: 152 EGGSAKLVCKAKGYPTPKITWRREDNKE 179
+ + C +P P + W + E
Sbjct: 118 DFSVLTVTCTVNAFPHPHVQWLMPEGVE 145
>pdb|3LMJ|H Chain H, Structure Of Human Anti Hiv 21c Fab
pdb|3LQA|H Chain H, Crystal Structure Of Clade C Gp120 In Complex With Scd4
And
Length = 231
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 16/102 (15%)
Query: 87 NARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPD-----IS 140
R+S+T + + NT + + S+R ED Y C N + + +S
Sbjct: 65 QGRVSMTEDTSTNTAYMELSSLRSEDTAVYYCATGGNYYNLWTGYYPLAYWGQGTLVTVS 124
Query: 141 SEETSGDMMVP--------EGGSAKLVCKAKGY-PTP-KITW 172
S T G + P GG+A L C K Y P P ++W
Sbjct: 125 SASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW 166
>pdb|1UZ8|B Chain B, Anti-Lewis X Fab Fragment In Complex With Lewis X
pdb|1UZ8|H Chain H, Anti-Lewis X Fab Fragment In Complex With Lewis X
Length = 212
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
Query: 95 NDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGG 154
N NT L + VR ED Y C T + ++ S +VP G
Sbjct: 74 NAKNTLYLQMSKVRSEDTALYYCARETGTRFDYWGQGTTLTVSSATTTAPSVYPLVPGGS 133
Query: 155 SAKLVCKAKGY-PTP 168
S L C KGY P P
Sbjct: 134 SVTLGCLVKGYFPEP 148
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 19/95 (20%)
Query: 145 SGDMMVPEGGSAKLVCKAKGY-------------PTPKITWRREDNKEIIVRSNPPSSQK 191
SG +V GGS KL C A G+ P + W E N + + PS +
Sbjct: 7 SGGGLVQPGGSQKLSCAASGFDFSGYWMSWVRQAPGKGLEWIGEINPDSSTINYTPSLKD 66
Query: 192 VFSVESE------VLSLTKVTRSEMGAYQCIAANG 220
F + + L ++KV + Y C G
Sbjct: 67 KFIISRDNAKNTLYLQMSKVRSEDTALYYCARETG 101
>pdb|1YC8|A Chain A, Caban33- Y37vE44GR45L TRIPLE MUTANT
pdb|1YC8|B Chain B, Caban33- Y37vE44GR45L TRIPLE MUTANT
pdb|1YZZ|A Chain A, Humanized Caban33 At Room Temperature
pdb|1YZZ|B Chain B, Humanized Caban33 At Room Temperature
Length = 124
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 88 ARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVN 120
R +++ ++A NT L + S++RED G Y CQ+
Sbjct: 65 GRFTISRDNAKNTVYLQMNSLQREDTGMYYCQIQ 98
>pdb|2BK8|A Chain A, M1 Domain From Titin
Length = 97
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 151 PEGGSAKLVCKAKGY-PTPKITWRREDNKEIIVRSNPPSSQKVFSVESEV--LSLTKVTR 207
EGG K VCK + Y + ++TW VR S + + E V L + +T+
Sbjct: 14 EEGGHVKYVCKIENYDQSTQVTWY------FGVRQLENSEKYEITYEDGVAILYVKDITK 67
Query: 208 SEMGAYQCIAAN 219
+ G Y+C N
Sbjct: 68 LDDGTYRCKVVN 79
>pdb|1I7Z|B Chain B, Antibody Gnc92h2 Bound To Ligand
pdb|1I7Z|D Chain D, Antibody Gnc92h2 Bound To Ligand
Length = 220
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 13/86 (15%)
Query: 97 ANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVP----- 151
A+T L I +++ ED Y C+ +P+ V +SS T G + P
Sbjct: 76 ASTAYLQIINLKNEDTATYFCETYDSPLGDYWGQGTTVT---VSSASTKGPSVFPLAPSS 132
Query: 152 ---EGGSAKLVCKAKGY-PTP-KITW 172
GG+A L C K Y P P ++W
Sbjct: 133 KSTSGGTAALGCLVKDYFPEPVTVSW 158
>pdb|1DQJ|A Chain A, Crystal Structure Of The Anti-Lysozyme Antibody Hyhel-63
Complexed With Hen Egg White Lysozyme
pdb|1DQM|L Chain L, Crystal Structure Of Anti-Lysozyme Antibody
pdb|1DQQ|A Chain A, Crystal Structure Of Anti-Lysozyme Antibody Hyhel-63
pdb|1DQQ|C Chain C, Crystal Structure Of Anti-Lysozyme Antibody Hyhel-63
pdb|1NBY|A Chain A, Crystal Structure Of Hyhel-63 Complexed With Hel Mutant
K96a
pdb|1NBZ|A Chain A, Crystal Structure Of Hyhel-63 Complexed With Hel Mutant
K97a
pdb|1NDG|A Chain A, Crystal Structure Of Fab Fragment Of Antibody Hyhel-8
Complexed With Its Antigen Lysozyme
pdb|1NDM|A Chain A, Crystal Structure Of Fab Fragment Of Antibody Hyhel-26
Complexed With Lysozyme
pdb|1XGU|A Chain A, Structure For Antibody Hyhel-63 Y33f Mutant Complexed With
Hen Egg Lysozyme
Length = 214
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 52/129 (40%), Gaps = 14/129 (10%)
Query: 100 WTLNIRSVRREDRGYYMC-QVNTNPMT----KQMAFLEVVIPPDISSEETSGDMMVPEGG 154
+TL+I SV ED G Y C Q N+ P T ++ P +S S + + G
Sbjct: 71 FTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLT--SG 128
Query: 155 SAKLVCKAKG-YPTP-----KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS 208
A +VC YP KI N + ++ S +S+ S L+LTK
Sbjct: 129 GASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM-SSTLTLTKDEYE 187
Query: 209 EMGAYQCIA 217
+Y C A
Sbjct: 188 RHNSYTCEA 196
>pdb|1H8N|A Chain A, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment From Phage-Displayed Murine Antibody
Libraries
Length = 252
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 21/85 (24%)
Query: 101 TLNIRSVRREDRGYYMCQ-VNTNPMTKQMAF-LEV------------------VIPPDIS 140
TL I +V+ ED Y CQ ++ P+T LE+ +
Sbjct: 75 TLTISNVQSEDLADYFCQQYSSYPLTFGAGTKLELKRGGGGSGGGGSGGGGSGGGGSQVQ 134
Query: 141 SEETSGDMMVPEGGSAKLVCKAKGY 165
+E+ G+++ P G S KL CKA GY
Sbjct: 135 LQESGGELVRP-GASVKLSCKASGY 158
>pdb|3D9A|L Chain L, High Resolution Crystal Structure Structure Of Hyhel10 Fab
Complexed To Hen Egg Lysozyme
Length = 213
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 52/129 (40%), Gaps = 14/129 (10%)
Query: 100 WTLNIRSVRREDRGYYMC-QVNTNPMT----KQMAFLEVVIPPDISSEETSGDMMVPEGG 154
+TL+I SV ED G Y C Q N+ P T ++ P +S S + + G
Sbjct: 71 FTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLT--SG 128
Query: 155 SAKLVCKAKG-YPTP-----KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS 208
A +VC YP KI N + ++ S +S+ S L+LTK
Sbjct: 129 GASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM-SSTLTLTKDEYE 187
Query: 209 EMGAYQCIA 217
+Y C A
Sbjct: 188 RHNSYTCEA 196
>pdb|3HFM|L Chain L, Structure Of An Antibody-Antigen Complex. Crystal
Structure Of The HyHEL-10 Fab-Lysozyme Complex
Length = 214
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 52/129 (40%), Gaps = 14/129 (10%)
Query: 100 WTLNIRSVRREDRGYYMC-QVNTNPMT----KQMAFLEVVIPPDISSEETSGDMMVPEGG 154
+TL+I SV ED G Y C Q N+ P T ++ P +S S + + G
Sbjct: 71 FTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLT--SG 128
Query: 155 SAKLVCKAKG-YPTP-----KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS 208
A +VC YP KI N + ++ S +S+ S L+LTK
Sbjct: 129 GASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM-SSTLTLTKDEYE 187
Query: 209 EMGAYQCIA 217
+Y C A
Sbjct: 188 RHNSYTCEA 196
>pdb|3L5Y|L Chain L, Crystal Structure Of The Complex Between Il-13 And M1295
Fab
Length = 213
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 19/155 (12%)
Query: 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT-KQMAFLEV---VIPPDISSEE 143
AR S + + + +TL I S+ ED Y CQ + P T Q LE+ V P +
Sbjct: 60 ARFSGSGSGTD-FTLTISSLEPEDFAVYYCQQHDYPYTFGQGTKLEIKRTVAAPSVFIFP 118
Query: 144 TSGDMMVPEGGSAKLVCKAKG-YP-TPKITWRRE------DNKEIIVRSNPPSSQKVFSV 195
S + + + G+A +VC YP K+ W+ + +++E + + S +S+
Sbjct: 119 PSDEQL--KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQD--SKDSTYSL 174
Query: 196 ESEVLSLTKVTRSEMGAYQC-IAANGVPPTVSKRL 229
S L+L+K + Y C + G+ V+K
Sbjct: 175 -SSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSF 208
>pdb|1XGP|A Chain A, Structure For Antibody Hyhel-63 Y33a Mutant Complexed With
Hen Egg Lysozyme
pdb|1XGQ|A Chain A, Structure For Antibody Hyhel-63 Y33v Mutant Complexed With
Hen Egg Lysozyme
pdb|1XGR|A Chain A, Structure For Antibody Hyhel-63 Y33i Mutant Complexed With
Hen Egg Lysozyme
pdb|1XGT|A Chain A, Structure For Antibody Hyhel-63 Y33l Mutant Complexed With
Hen Egg Lysozyme
Length = 215
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 52/129 (40%), Gaps = 14/129 (10%)
Query: 100 WTLNIRSVRREDRGYYMC-QVNTNPMT----KQMAFLEVVIPPDISSEETSGDMMVPEGG 154
+TL+I SV ED G Y C Q N+ P T ++ P +S S + + G
Sbjct: 72 FTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLT--SG 129
Query: 155 SAKLVCKAKG-YPTP-----KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS 208
A +VC YP KI N + ++ S +S+ S L+LTK
Sbjct: 130 GASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM-SSTLTLTKDEYE 188
Query: 209 EMGAYQCIA 217
+Y C A
Sbjct: 189 RHNSYTCEA 197
>pdb|1YC7|A Chain A, Caban33 Vhh Fragment Against Vsg
pdb|1YC7|B Chain B, Caban33 Vhh Fragment Against Vsg
Length = 124
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 88 ARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVN 120
R +++ ++A NT L + S++RED G Y CQ+
Sbjct: 65 GRFTISRDNAKNTVYLQMNSLQREDTGMYYCQIQ 98
>pdb|1TZH|A Chain A, Crystal Structure Of The Fab Yads1 Complexed With H-Vegf
pdb|1TZH|L Chain L, Crystal Structure Of The Fab Yads1 Complexed With H-Vegf
Length = 213
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 18/143 (12%)
Query: 100 WTLNIRSVRREDRGYYMCQVNTNPMT----KQMAFLEVVIPPDISSEETSGDMMVPEGGS 155
+TL I S++ ED Y CQ + +P T ++ V P + S + + + G+
Sbjct: 71 FTLTISSLQPEDFATYYCQSSASPATFGQGTKVEIKRTVAAPSVFIFPPSDEQL--KSGT 128
Query: 156 AKLVCKAKG-YP-TPKITWRRE------DNKEIIVRSNPPSSQKVFSVESEVLSLTKVTR 207
A +VC YP K+ W+ + +++E + + S +S+ S L+L+K
Sbjct: 129 ASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQD--SKDSTYSL-SSTLTLSKADY 185
Query: 208 SEMGAYQC-IAANGVPPTVSKRL 229
+ Y C + G+ V+K
Sbjct: 186 EKHKVYACEVTHQGLSSPVTKSF 208
>pdb|3LD8|B Chain B, Structure Of Jmjd6 And Fab Fragments
pdb|3LDB|B Chain B, Structure Of Jmjd6 Complexd With Alpha-Ketoglutarate And
Fab Fragment
Length = 220
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 100 WTLNIRSVRREDRGYYMCQVN-TNPMT----KQMAFLEVVIPPDISSEETSGDMMVPEGG 154
+TL I SV+ ED G Y CQ +NP T ++ P +S S + + G
Sbjct: 77 YTLTITSVQAEDMGQYFCQQGISNPYTFGAGTKLEIKRADAKPTVSIFPPSSEQLGT--G 134
Query: 155 SAKLVC 160
SA LVC
Sbjct: 135 SATLVC 140
>pdb|3NBN|A Chain A, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|D Chain D, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
Length = 433
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 129 AFLEVVIPPDISSEE--TSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNP 186
AF ++ D S E T D + G + KLVC G P++ R+ D + ++ ++
Sbjct: 198 AFFIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADD 257
Query: 187 PSSQ 190
P SQ
Sbjct: 258 PVSQ 261
>pdb|32C2|A Chain A, Structure Of An Activity Suppressing Fab Fragment To
Cytochrome P450 Aromatase
Length = 217
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 55/140 (39%), Gaps = 14/140 (10%)
Query: 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT----KQMAFLEVVIPPDISSEE 143
AR S + + + +TLNI V ED Y CQ P+T ++ P +S
Sbjct: 64 ARFSGSGSGTD-FTLNIHPVEEEDAATYYCQHIREPLTFGGGTKLEIKRADAAPTVSIFP 122
Query: 144 TSGDMMVPEGGSAKLVCKAKG-YPTP-----KITWRREDNKEIIVRSNPPSSQKVFSVES 197
S + + G A +VC YP KI N + ++ S +S+ S
Sbjct: 123 PSSEQLT--SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM-S 179
Query: 198 EVLSLTKVTRSEMGAYQCIA 217
L+LTK +Y C A
Sbjct: 180 STLTLTKDEYERHNSYTCEA 199
>pdb|4ERS|L Chain L, A Molecular Basis For Negative Regulation Of The Glucagon
Receptor
Length = 214
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 19/144 (13%)
Query: 100 WTLNIRSVRREDRGYYMC-QVNTNPMT----KQMAFLEVVIPPDISSEETSGDMMVPEGG 154
+TL I SV+ ED Y C Q N+NP+T ++ V P + S + + + G
Sbjct: 71 FTLTISSVQPEDFVTYYCLQHNSNPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQL--KSG 128
Query: 155 SAKLVCKAKG-YP-TPKITWRRE------DNKEIIVRSNPPSSQKVFSVESEVLSLTKVT 206
+A +VC YP K+ W+ + +++E + + S +S+ S L+L+K
Sbjct: 129 TASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQD--SKDSTYSL-SSTLTLSKAD 185
Query: 207 RSEMGAYQC-IAANGVPPTVSKRL 229
+ Y C + G+ V+K
Sbjct: 186 YEKHKVYACEVTHQGLSSPVTKSF 209
>pdb|1ZTX|L Chain L, West Nile Virus Envelope Protein Diii In Complex With
Neutralizing E16 Antibody Fab
Length = 212
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 14/131 (10%)
Query: 100 WTLNIRSVRREDRGYYMCQVN-TNPMT----KQMAFLEVVIPPDISSEETSGDMMVPEGG 154
+TL I SV+ ED Y CQ + T P+T ++ P +S S + + G
Sbjct: 71 YTLTISSVQAEDLALYYCQQHYTTPLTFGAGTKLELKRADAAPTVSIFPPSSEQLT--SG 128
Query: 155 SAKLVCKAKG-YPTP-----KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS 208
A +VC YP KI N + ++ S +S+ S L+LTK
Sbjct: 129 GASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM-SSTLTLTKDEYE 187
Query: 209 EMGAYQCIAAN 219
+Y C A +
Sbjct: 188 RHNSYTCEATH 198
>pdb|1F4W|H Chain H, Crystal Structure Of An Anti-Carbohydrate Antibody
Directed Against Vibrio Cholerae O1 In Complex With
Antigen
pdb|1F4X|H Chain H, Crystal Structure Of An Anti-Carbohydrate Antibody
Directed Against Vibrio Cholerae O1 In Complex With
Antigen
pdb|1F4Y|H Chain H, Crystal Structure Of An Anti-Carbohydrate Antibody
Directed Against Vibrio Cholerae O1 In Complex With
Antigen
Length = 216
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 138 DISSEETSGDMMVPEGGSAKLVCKAKGY--PTPKITWRRE 175
++ EE+ G ++ P GGS +L C A GY T ++W R+
Sbjct: 1 EVQLEESGGGLVTP-GGSLRLSCAASGYVFSTYDMSWVRQ 39
>pdb|2F8X|C Chain C, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3V79|C Chain C, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 434
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 129 AFLEVVIPPDISSEE--TSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNP 186
AF ++ D S E T D + G + KLVC G P++ R+ D + ++ ++
Sbjct: 198 AFFIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADD 257
Query: 187 PSSQ 190
P SQ
Sbjct: 258 PVSQ 261
>pdb|1F6A|A Chain A, Structure Of The Human Ige-Fc Bound To Its High Affinity
Receptor Fc(Epsilon)ri(Alpha)
Length = 176
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
+LNI + + ED G Y CQ + + +LEV D + S ++++ EG L C
Sbjct: 52 SLNIVNAKFEDSGEYKCQ-HQQVAESEPVYLEVF--SDWLLLQASAEVVM-EGQPLFLRC 107
Query: 161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQC 215
WR D ++I + + + + E+ +S+T + G Y C
Sbjct: 108 HG---------WRNWDVYKVIYYKDGEALK--YWYENHAISITNAAAEDSGTYYC 151
>pdb|3D85|A Chain A, Crystal Structure Of Il-23 In Complex With Neutralizing
Fab
Length = 214
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 19/144 (13%)
Query: 100 WTLNIRSVRREDRGYYMCQ-VNTNPMT----KQMAFLEVVIPPDISSEETSGDMMVPEGG 154
+TL+I SV ED G Y CQ ++ P T ++ V P + S + + + G
Sbjct: 71 FTLSINSVEPEDVGVYYCQNGHSFPFTFGSGTKLEIKRTVAAPSVFIFPPSDEQL--KSG 128
Query: 155 SAKLVCKAKG-YP-TPKITWRRE------DNKEIIVRSNPPSSQKVFSVESEVLSLTKVT 206
+A +VC YP K+ W+ + +++E + + S +S+ S L+L+K
Sbjct: 129 TASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQD--SKDSTYSL-SSTLTLSKAD 185
Query: 207 RSEMGAYQC-IAANGVPPTVSKRL 229
+ Y C + G+ V+K
Sbjct: 186 YEKHKVYACEVTHQGLSSPVTKSF 209
>pdb|3B9K|A Chain A, Crystal Structure Of Cd8alpha-Beta In Complex With Yts
156.7 Fab
pdb|3B9K|E Chain E, Crystal Structure Of Cd8alpha-Beta In Complex With Yts
156.7 Fab
Length = 131
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 86 NNARL-SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEET 144
N+++L S + N + L + +E+ GYY C V +N + M F VV P + +
Sbjct: 70 NSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSV---MYFSSVV--PVLQKVNS 124
Query: 145 SGDMM 149
S D++
Sbjct: 125 SADLV 129
>pdb|3IAG|C Chain C, Csl (Rbp-Jk) Bound To Hes-1 Nonconsensus Site
Length = 422
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 142 EETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQ 190
E T D + G + KLVC G P++ R+ D + ++ ++ P SQ
Sbjct: 208 EFTVRDGYIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQ 256
>pdb|1F11|A Chain A, F124 Fab Fragment From A Monoclonal Anti-Pres2 Antibody
pdb|1F11|C Chain C, F124 Fab Fragment From A Monoclonal Anti-Pres2 Antibody
Length = 218
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 15/141 (10%)
Query: 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMC-QVNTNPMT----KQMAFLEVVIPPDISSE 142
AR S + + + +TLNI V ED Y C Q N +P T ++ P +S
Sbjct: 64 ARFSGSGSGTD-FTLNIHPVEEEDAATYYCQQSNEDPFTFGSGTKLEIKRADAAPTVSIF 122
Query: 143 ETSGDMMVPEGGSAKLVCKAKG-YPTP-----KITWRREDNKEIIVRSNPPSSQKVFSVE 196
S + + G A +VC YP KI N + ++ S +S+
Sbjct: 123 PPSSEQLT--SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM- 179
Query: 197 SEVLSLTKVTRSEMGAYQCIA 217
S L+LTK +Y C A
Sbjct: 180 SSTLTLTKDEYERHNSYTCEA 200
>pdb|3BRG|C Chain C, Csl (Rbp-Jk) Bound To Dna
Length = 427
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 142 EETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQ 190
E T D + G + KLVC G P++ R+ D + ++ ++ P SQ
Sbjct: 213 EFTVRDGYIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQ 261
>pdb|1J89|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|B Chain B, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|C Chain C, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|D Chain D, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|E Chain E, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J88|A Chain A, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|B Chain B, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|C Chain C, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|D Chain D, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|E Chain E, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
Length = 172
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 15/115 (13%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
+LNI + + ED G Y CQ + + +LEV D + S ++++ EG L C
Sbjct: 52 SLNIVNAKFEDSGEYKCQ-HQQVNESEPVYLEVF--SDWLLLQASAEVVM-EGQPLFLRC 107
Query: 161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQC 215
WR D ++I + + + + E+ +S+T T + G Y C
Sbjct: 108 HG---------WRNWDVYKVIYYKDGEALK--YWYENHNISITNATVEDSGTYYC 151
>pdb|2Y7Q|A Chain A, The High-Affinity Complex Between Ige And Its Receptor Fc
Epsilon Ri
Length = 188
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
+LNI + + ED G Y CQ + + +LEV D + S ++++ EG L C
Sbjct: 55 SLNIVNAKFEDSGEYKCQ-HQQVAESEPVYLEVF--SDWLLLQASAEVVM-EGQPLFLRC 110
Query: 161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQC 215
WR D ++I + + + + E+ +S+T + G Y C
Sbjct: 111 HG---------WRNWDVYKVIYYKDGEALK--YWYENHAISITNAAAEDSGTYYC 154
>pdb|1MLB|A Chain A, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme
pdb|1MLC|A Chain A, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme Complexed With Lysozyme
pdb|1MLC|C Chain C, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme Complexed With Lysozyme
Length = 214
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 52/129 (40%), Gaps = 14/129 (10%)
Query: 100 WTLNIRSVRREDRGYYMC-QVNTNPMT----KQMAFLEVVIPPDISSEETSGDMMVPEGG 154
+TL+I SV ED G Y C Q N+ P T ++ P +S S + + G
Sbjct: 71 FTLSINSVETEDFGMYFCQQSNSWPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLT--SG 128
Query: 155 SAKLVCKAKG-YPTP-----KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS 208
A +VC YP KI N + ++ S +S+ S L+LTK
Sbjct: 129 GASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM-SSTLTLTKDEYE 187
Query: 209 EMGAYQCIA 217
+Y C A
Sbjct: 188 RHNSYTCEA 196
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 10/106 (9%)
Query: 138 DISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKE---IIVRSNPPSSQKV-- 192
DI ++ + V G S L C+A + + W ++ + E ++++ SS +
Sbjct: 1 DIELTQSPATLSVTPGDSVSLSCRASQSISNNLHWYQQKSHESPRLLIKYVSQSSSGIPS 60
Query: 193 -FSVESE----VLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
FS LS+ V + G Y C +N P T L +
Sbjct: 61 RFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSWPRTFGGGTKLEI 106
>pdb|3S35|X Chain X, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
pdb|3S36|X Chain X, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
pdb|3S37|X Chain X, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
Length = 122
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 165 YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
YP+ K ++ N+++ +S S K F L++ VTRS+ G Y C A++G+
Sbjct: 46 YPSSKHQHKKLVNRDLKTQSG--SEMKKFL---STLTIDGVTRSDQGLYTCAASSGL 97
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQ 127
TL I V R D+G Y C ++ MTK+
Sbjct: 75 TLTIDGVTRSDQGLYTCAASSGLMTKK 101
>pdb|1QLE|H Chain H, Cryo-structure Of The Paracoccus Denitrificans
Four-subunit Cytochrome C Oxidase In The Completely
Oxidized State Complexed With An Antibody Fv Fragment
Length = 119
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 138 DISSEETSGDMMVPEGGSAKLVCKAKGYPTPKIT--WRRE 175
++ +E+ GD++ P GGS KL C A G+ T W R+
Sbjct: 1 EVKLQESGGDLVQP-GGSLKLSCAASGFTFSSYTMSWVRQ 39
>pdb|3L95|B Chain B, Crystal Structure Of The Human Notch1 Negative Regulatory
Region (Nrr) Bound To The Fab Fragment Of An Antagonist
Antibody
pdb|3L95|H Chain H, Crystal Structure Of The Human Notch1 Negative Regulatory
Region (Nrr) Bound To The Fab Fragment Of An Antagonist
Antibody
Length = 227
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 145 SGDMMVPEGGSAKLVCKAKG--YPTPKITWRRE---DNKEIIVRSNPP 187
SG +V GGS +L C A G + + I W R+ E + R NPP
Sbjct: 7 SGGGLVQPGGSLRLSCAASGFTFSSYWIHWVRQAPGKGLEWVARINPP 54
>pdb|3QSK|B Chain B, 5 Histidine Variant Of The Anti-Rnase A Vhh In Complex
With Rnase A
Length = 123
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 145 SGDMMVPEGGSAKLVCKAKGYPTPKI--TWRRE 175
SG +V GGS +L C A GY P I W R+
Sbjct: 9 SGGGLVQAGGSLRLSCAASGYHHPYIYMGWFRQ 41
>pdb|1H5B|A Chain A, T Cell Receptor Valpha11 (Av11s5) Domain
Length = 113
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 66 VAWIKADTKAVLAIHEHVITN---NARLSVTHND--ANTWTLNIRSVRREDRGYYMCQVN 120
V W + +++ L ++ + N RL + A TL+IR + ED G Y C
Sbjct: 32 VQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCAAE 91
Query: 121 TNPMTKQMAF 130
+ + Q+ F
Sbjct: 92 ASSGSWQLIF 101
>pdb|3TT1|L Chain L, Crystal Structure Of Leut In The Outward-Open Conformation
In Complex With Fab
pdb|3TT1|M Chain M, Crystal Structure Of Leut In The Outward-Open Conformation
In Complex With Fab
Length = 218
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 15/141 (10%)
Query: 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMC-QVNTNPMT----KQMAFLEVVIPPDISSE 142
AR S + + + +TLNI V ED Y C Q N +P T ++ P +S
Sbjct: 64 ARFSGSGSGTD-FTLNIHPVEEEDAATYYCQQSNEDPYTFGGGTKLEIKRADAAPTVSIF 122
Query: 143 ETSGDMMVPEGGSAKLVCKAKG-YPTP-----KITWRREDNKEIIVRSNPPSSQKVFSVE 196
S + + G A +VC YP KI N + ++ S +S+
Sbjct: 123 PPSSEQLT--SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM- 179
Query: 197 SEVLSLTKVTRSEMGAYQCIA 217
S L+LTK +Y C A
Sbjct: 180 SSTLTLTKDEYERHNSYTCEA 200
>pdb|1J87|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Hexagonal Crystal Form 1
Length = 172
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 15/115 (13%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
+LNI + + ED G Y CQ + + +LEV D + S ++++ EG L C
Sbjct: 52 SLNIVNAKFEDSGEYKCQ-HQQVNESEPVYLEVF--SDWLLLQASAEVVM-EGQPLFLRC 107
Query: 161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQC 215
WR D ++I + + + + E+ +S+T T + G Y C
Sbjct: 108 HG---------WRNWDVYKVIYYKDGEALK--YWYENHNISITNATVEDSGTYYC 151
>pdb|3QQ9|L Chain L, Crystal Structure Of Fab Fragment Of Anti-Human Rsv
(Respiratory Syncytial Virus) F Protein Mab 101f
pdb|3QQ9|C Chain C, Crystal Structure Of Fab Fragment Of Anti-Human Rsv
(Respiratory Syncytial Virus) F Protein Mab 101f
Length = 218
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 19/144 (13%)
Query: 100 WTLNIRSVRREDRGYYMC-QVNTNPMT----KQMAFLEVVIPPDISSEETSGDMMVPEGG 154
+TLNI V ED Y C Q+ +P T ++ V P + S + + + G
Sbjct: 75 FTLNIHPVEEEDAATYYCQQIIEDPWTFGGGTKLEIKRTVAAPSVFIFPPSDEQL--KSG 132
Query: 155 SAKLVCKAKG-YP-TPKITWRRE------DNKEIIVRSNPPSSQKVFSVESEVLSLTKVT 206
+A +VC YP K+ W+ + +++E + + S +S+ S L+L+K
Sbjct: 133 TASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQD--SKDSTYSL-SSTLTLSKAD 189
Query: 207 RSEMGAYQC-IAANGVPPTVSKRL 229
+ Y C + G+ V+K
Sbjct: 190 YEKHKVYACEVTHQGLSSPVTKSF 213
>pdb|2P4A|B Chain B, X-Ray Structure Of A Camelid Affinity Matured
Single-Domain Vhh Antibody Fragment In Complex With
Rnase A
pdb|2P4A|D Chain D, X-Ray Structure Of A Camelid Affinity Matured
Single-Domain Vhh Antibody Fragment In Complex With
Rnase A
Length = 121
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 145 SGDMMVPEGGSAKLVCKAKGYPTPKI--TWRRE 175
SG +V GGS +L C A GYP I W R+
Sbjct: 7 SGGGLVQAGGSLRLSCAASGYPWTYIYMGWFRQ 39
>pdb|4F9P|D Chain D, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
pdb|4F9P|C Chain C, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
Length = 254
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 16/99 (16%)
Query: 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKE---IIVRSNPPSSQKVFSVESEV----- 199
+ V G S L C+A + + W R+ + E ++++ +SQ +F + S
Sbjct: 147 LSVTPGDSVSLSCRASQSISNNLHWYRQKSHESPRLLIKY---ASQSIFGIPSRFSGSGS 203
Query: 200 -----LSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
LS+ V + G Y C +N P T L +
Sbjct: 204 GTEFTLSINSVETEDFGIYFCQQSNSWPHTFGTGTKLEL 242
>pdb|1F2Q|A Chain A, Crystal Structure Of The Human High-Affinity Ige Receptor
pdb|1J86|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Monoclinic Crystal Form 2
pdb|1J86|B Chain B, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Monoclinic Crystal Form 2
pdb|1RPQ|A Chain A, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|B Chain B, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|C Chain C, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|D Chain D, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
Length = 176
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 15/115 (13%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
+LNI + + ED G Y CQ + + +LEV D + S ++++ EG L C
Sbjct: 52 SLNIVNAKFEDSGEYKCQ-HQQVNESEPVYLEVF--SDWLLLQASAEVVM-EGQPLFLRC 107
Query: 161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQC 215
WR D ++I + + + + E+ +S+T T + G Y C
Sbjct: 108 HG---------WRNWDVYKVIYYKDGEALK--YWYENHNISITNATVEDSGTYYC 151
>pdb|4EOW|H Chain H, Crystal Structure Of A Disease-Associated Anti-Human
Gm-Csf Autoantibody Mb007
Length = 228
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 19/90 (21%)
Query: 145 SGDMMVPEGGSAKLVCKAKGYPTPK--ITWRREDNKE-------IIVRSNPPSSQKVF-- 193
SG + G S K+ CKA GY + I W R+ + I RS P+ + F
Sbjct: 7 SGSELKKPGASVKVSCKASGYSFSRYGIKWVRQAPGQGLEWMGWINTRSGVPAYAQGFTG 66
Query: 194 --------SVESEVLSLTKVTRSEMGAYQC 215
SV++ L ++ + + G Y C
Sbjct: 67 RFVFSLDTSVDTAFLEISSLKTEDTGIYYC 96
>pdb|1AR1|C Chain C, Structure At 2.7 Angstrom Resolution Of The Paracoccus
Denitrificans Two-Subunit Cytochrome C Oxidase Complexed
With An Antibody Fv Fragment
pdb|1MQK|H Chain H, Crystal Structure Of The Unliganded Fv-Fragment Of The
Anti- Cytochrome C Oxidase Antibody 7e2
pdb|3EHB|C Chain C, A D-Pathway Mutation Decouples The Paracoccus
Denitrificans Cytochrome C Oxidase By Altering The Side
Chain Orientation Of A Distant, Conserved Glutamate
pdb|3HB3|C Chain C, High Resolution Crystal Structure Of Paracoccus
Denitrificans Cytochrome C Oxidase
Length = 127
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 138 DISSEETSGDMMVPEGGSAKLVCKAKGYPTPKIT--WRRE 175
++ +E+ GD++ P GGS KL C A G+ T W R+
Sbjct: 1 EVKLQESGGDLVQP-GGSLKLSCAASGFTFSSYTMSWVRQ 39
>pdb|4DVB|A Chain A, The Crystal Structure Of The Fab Fragment Of Pro-upa
Antibody Mab-112
pdb|4DVB|H Chain H, The Crystal Structure Of The Fab Fragment Of Pro-upa
Antibody Mab-112
Length = 213
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 142 EETSGDMMVPEGGSAKLVCKAKGYPTPK--ITWRRE 175
+E+ GD++ P GGS KL C A G+ + ++W R+
Sbjct: 5 QESGGDLVKP-GGSLKLSCSASGFTFSRYAMSWVRQ 39
>pdb|3O4L|D Chain D, Genetic And Structural Basis For Selection Of A Ubiquitous
T Cell Receptor Deployed In Epstein-Barr Virus
Length = 195
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 6/108 (5%)
Query: 59 TDSSAMKVAWIKADTKAVLAIHEHVITN-----NARLSVTHNDANT-WTLNIRSVRREDR 112
TDSS+ + W K + A L + ++ +N + R +V N + +L I + D
Sbjct: 20 TDSSSTYLYWYKQEPGAGLQLLTYIFSNMDMKQDQRKTVLLNKKDKHLSLRIADTQTGDS 79
Query: 113 GYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
Y C + N ++V+ P+I + + + + S K VC
Sbjct: 80 AIYFCAEDNNARLMFGDGTQLVVKPNIQNPDPAVYQLRDSKSSDKSVC 127
>pdb|3K1K|C Chain C, Green Fluorescent Protein Bound To Minimizer Nanobody
pdb|3K1K|D Chain D, Green Fluorescent Protein Bound To Minimizer Nanobody
Length = 123
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 145 SGDMMVPEGGSAKLVCKAKGYPTPKIT--WRRE 175
SG +V GGS +L C A G+P + + W R+
Sbjct: 9 SGGALVQPGGSLRLSCAASGFPVNRYSMRWYRQ 41
>pdb|1A6T|B Chain B, Fab Fragment Of Mab1-Ia Monoclonal Antibody To Human
Rhinovirus 14 Nim-Ia Site
pdb|1A6T|D Chain D, Fab Fragment Of Mab1-Ia Monoclonal Antibody To Human
Rhinovirus 14 Nim-Ia Site
Length = 217
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 143 ETSGDMMVPEGGSAKLVCKAKGY--PTPKITWRREDNK---EIIVRSNPPSSQKVFSVES 197
+ SG +V G S K+ CKA GY T + W ++ + E I R +P + F+ +
Sbjct: 5 QQSGPDLVKPGASVKISCKASGYSFSTYYMHWVKQSHGKSLEWIGRVDPDNGGTSFNQKF 64
Query: 198 EVLSLTKVTRSEMGAY 213
+ ++ V +S AY
Sbjct: 65 KGKAILTVDKSSSTAY 80
>pdb|4DW2|H Chain H, The Crystal Structure Of Upa In Complex With The Fab
Fragment Of Mab- 112
Length = 212
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 142 EETSGDMMVPEGGSAKLVCKAKGYPTPK--ITWRRE 175
+E+ GD++ P GGS KL C A G+ + ++W R+
Sbjct: 5 QESGGDLVKP-GGSLKLSCSASGFTFSRYAMSWVRQ 39
>pdb|3QIU|C Chain C, Crystal Structure Of The 226 Tcr In Complex With MccI-Ek
pdb|3QIW|C Chain C, Crystal Structure Of The 226 Tcr In Complex With
Mcc-P5eI-Ek
Length = 205
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 41 SSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN---NARLSVTHNDA 97
S S H TG ++ ++ V W + +++ L ++ + N RL +
Sbjct: 9 SPSALSLHEGTGSALRCNFTTTMRAVQWFRKNSRGSLINLFYLASGTKENGRLKSAFDSK 68
Query: 98 NTW-TLNIRSVRREDRGYYMC 117
+ TL+IR + ED G Y C
Sbjct: 69 ERYSTLHIRDAQLEDSGTYFC 89
>pdb|3OGO|E Chain E, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
pdb|3OGO|F Chain F, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
pdb|3OGO|G Chain G, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
pdb|3OGO|H Chain H, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
Length = 123
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 145 SGDMMVPEGGSAKLVCKAKGYPTPKIT--WRRE 175
SG +V GGS +L C A G+P + + W R+
Sbjct: 8 SGGALVQPGGSLRLSCAASGFPVNRYSMRWYRQ 40
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 11/77 (14%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE----VLSL 202
D V EG + + +G P P ++W R N++ + Q+ F+ E+E L +
Sbjct: 14 DQSVREGQDVIMSIRVQGEPKPVVSWLR--NRQPVR-----PDQRRFAEEAEGGLCRLRI 66
Query: 203 TKVTRSEMGAYQCIAAN 219
R + G Y C A N
Sbjct: 67 LAAERGDAGFYTCKAVN 83
>pdb|1T3F|B Chain B, Three Dimensional Structure Of A Humanized Anti-Ifn-Gamma
Fab (Huzaf) In P21 21 21 Space Group
Length = 220
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 14/103 (13%)
Query: 80 HEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDI 139
+ + A L+V NT + + S+R ED Y C P +V +
Sbjct: 60 YNQDFKDKATLTV-DKSTNTAYMELSSLRSEDTAVYYCARGFLPWFADWGQGTLVT---V 115
Query: 140 SSEETSGDMMVP--------EGGSAKLVCKAKGY-PTP-KITW 172
SS T G + P GG+A L C K Y P P ++W
Sbjct: 116 SSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW 158
>pdb|2ZNX|A Chain A, 5-Fluorotryptophan Incorporated Scfv10 Complexed To Hen
Egg Lysozyme
pdb|2ZNX|B Chain B, 5-Fluorotryptophan Incorporated Scfv10 Complexed To Hen
Egg Lysozyme
Length = 242
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 100 WTLNIRSVRREDRGYYMC-QVNTNPMT 125
+TL+I SV ED G Y C Q N+ P T
Sbjct: 71 FTLSINSVETEDFGMYFCQQSNSXPYT 97
>pdb|1T04|B Chain B, Three Dimensional Structure Of A Humanized Anti-Ifn-Gamma
Fab In C2 Space Group
pdb|1T04|D Chain D, Three Dimensional Structure Of A Humanized Anti-Ifn-Gamma
Fab In C2 Space Group
Length = 219
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 14/103 (13%)
Query: 80 HEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDI 139
+ + A L+V NT + + S+R ED Y C P +V +
Sbjct: 60 YNQDFKDKATLTV-DKSTNTAYMELSSLRSEDTAVYYCARGFLPWFADWGQGTLVT---V 115
Query: 140 SSEETSGDMMVP--------EGGSAKLVCKAKGY-PTP-KITW 172
SS T G + P GG+A L C K Y P P ++W
Sbjct: 116 SSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW 158
>pdb|1IQW|L Chain L, Crystal Structure Of The Fab Fragment Of The Mouse Anti-
Human Fas Antibody Hfe7a
Length = 218
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 15/141 (10%)
Query: 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMC-QVNTNPMT----KQMAFLEVVIPPDISSE 142
AR S + + + +TLNI V ED Y C Q N +P T ++ P +S
Sbjct: 64 ARFSGSGSGTD-FTLNIHPVEEEDAATYYCQQSNEDPRTFGGGTKLEIKRADAAPTVSIF 122
Query: 143 ETSGDMMVPEGGSAKLVCKAKG-YPTP-----KITWRREDNKEIIVRSNPPSSQKVFSVE 196
S + + G A +VC YP KI N + ++ S +S+
Sbjct: 123 PPSSEQLT--SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM- 179
Query: 197 SEVLSLTKVTRSEMGAYQCIA 217
S L+LTK +Y C A
Sbjct: 180 SSTLTLTKDEYERHNSYTCEA 200
>pdb|1QKZ|H Chain H, Fab Fragment (Mn14c11.6) In Complex With A Peptide Antigen
Derived From Neisseria Meningitidis P1.7 Serosubtype
Antigen And Domain Ii From Streptococcal Protein G
Length = 219
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 14/98 (14%)
Query: 87 NARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVNTNPMTKQ-MAFLEVVIPPDISSEET 144
R +++ ++A N L + S++ ED G Y C +P+ M + +SS +T
Sbjct: 65 KGRFTISRDNAKNNLYLQMNSLKSEDTGMYYCA--RDPLEYYGMDYWGQGTSVAVSSAKT 122
Query: 145 SGDMMVP--------EGGSAKLVCKAKGY-PTP-KITW 172
+ + P G S L C KGY P P +TW
Sbjct: 123 TAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTVTW 160
>pdb|1F58|L Chain L, Igg1 Fab Fragment (58.2) Complex With 24-Residue Peptide
(Residues 308-333 Of Hiv-1 Gp120 (Mn Isolate) With Ala
To Aib Substitution At Position 323
pdb|2F58|L Chain L, Igg1 Fab Fragment (58.2) Complex With 12-Residue Cyclic
Peptide (Including Residues 315-324 Of Hiv-1 Gp120) (Mn
Isolate)
Length = 216
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 14/129 (10%)
Query: 100 WTLNIRSVRREDRGYYMC-QVNTNPMT----KQMAFLEVVIPPDISSEETSGDMMVPEGG 154
+TLNI V ED Y C Q + +P+T ++ P +S S + + G
Sbjct: 75 FTLNIHPVEEEDAATYYCQQSHEDPLTFGAGTKLELKRADAAPTVSIFPPSSEQLT--SG 132
Query: 155 SAKLVCKAKG-YPTP-----KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS 208
A +VC YP KI N + ++ S +S+ S L+LTK
Sbjct: 133 GASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM-SSTLTLTKDEYE 191
Query: 209 EMGAYQCIA 217
+Y C A
Sbjct: 192 RHNSYTCEA 200
>pdb|3QJH|A Chain A, The Crystal Structure Of The 5c.C7 Tcr
pdb|3QJH|C Chain C, The Crystal Structure Of The 5c.C7 Tcr
Length = 205
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 41 SSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT---NNARLSVTHNDA 97
S S H TG ++ ++ V W + +++ L ++ + N RL +
Sbjct: 9 SPSALSLHEGTGSALRCNFTTTMRAVQWFRKNSRGSLINLFYLASGTKENGRLKSAFDSK 68
Query: 98 NTW-TLNIRSVRREDRGYYMCQV---NTN 122
+ TL+IR + ED G Y C NTN
Sbjct: 69 ERYSTLHIRDAQLEDSGTYFCAAEASNTN 97
>pdb|3F58|L Chain L, Igg1 Fab Fragment (58.2) Complex With 12-Residue Cyclic
Peptide (Including Residues 315-324 Of Hiv-1 Gp120 (Mn
Isolate); H315s Mutation
Length = 215
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 14/129 (10%)
Query: 100 WTLNIRSVRREDRGYYMC-QVNTNPMT----KQMAFLEVVIPPDISSEETSGDMMVPEGG 154
+TLNI V ED Y C Q + +P+T ++ P +S S + + G
Sbjct: 75 FTLNIHPVEEEDAATYYCQQSHEDPLTFGAGTKLELKRADAAPTVSIFPPSSEQLT--SG 132
Query: 155 SAKLVCKAKG-YPTP-----KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS 208
A +VC YP KI N + ++ S +S+ S L+LTK
Sbjct: 133 GASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM-SSTLTLTKDEYE 191
Query: 209 EMGAYQCIA 217
+Y C A
Sbjct: 192 RHNSYTCEA 200
>pdb|1A4J|H Chain H, Diels Alder Catalytic Antibody Germline Precursor
pdb|1A4J|B Chain B, Diels Alder Catalytic Antibody Germline Precursor
pdb|1A4K|H Chain H, Diels Alder Catalytic Antibody With Transition State
Analogue
pdb|1A4K|B Chain B, Diels Alder Catalytic Antibody With Transition State
Analogue
Length = 219
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 97 ANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVP----- 151
A+T L I +++ ED Y C V + + + +SS T G + P
Sbjct: 76 ASTAYLQINNLKNEDTATYFC-VQAERLRRTFDYWGAGTTVTVSSASTKGPSVFPLAPSS 134
Query: 152 ---EGGSAKLVCKAKGY-PTP-KITW 172
GG+A L C K Y P P ++W
Sbjct: 135 KSTSGGTAALGCLVKDYFPEPVTVSW 160
>pdb|2PTT|A Chain A, Structure Of Nk Cell Receptor 2b4 (Cd244) Bound To Its
Ligand Cd48
pdb|2PTV|A Chain A, Structure Of Nk Cell Receptor Ligand Cd48
Length = 110
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 39 RVSSSVTDTHVNTGGSIVFPTDSSAM----KVAWIKADTKAVLAIHEH---VITNNARLS 91
R S+ D + TG ++ + ++ W+ + +L + + I +
Sbjct: 5 RARGSIPDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKG 64
Query: 92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIP 136
+ + N L+I +VR+ED+G Y +V + LEV P
Sbjct: 65 RVYLEENNGALHISNVRKEDKGTYYMRVLRETENELKITLEVFDP 109
>pdb|1I85|A Chain A, Crystal Structure Of The Ctla-4B7-2 Complex
pdb|1I85|B Chain B, Crystal Structure Of The Ctla-4B7-2 Complex
pdb|1NCN|A Chain A, The Receptor-Binding Domain Of Human B7-2
pdb|1NCN|B Chain B, The Receptor-Binding Domain Of Human B7-2
Length = 110
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 17/22 (77%)
Query: 96 DANTWTLNIRSVRREDRGYYMC 117
D+++WTL + +++ +D+G Y C
Sbjct: 65 DSDSWTLRLHNLQIKDKGLYQC 86
>pdb|1H8O|A Chain A, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment.
pdb|1H8O|B Chain B, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment.
pdb|1H8S|A Chain A, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment Complexed With The Hapten.
pdb|1H8S|B Chain B, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment Complexed With The Hapten
Length = 252
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 21/85 (24%)
Query: 101 TLNIRSVRREDRGYYMCQ-VNTNPMTKQMAF-LEV------------------VIPPDIS 140
TL I +V+ ED Y CQ ++ P+T LE+ +
Sbjct: 75 TLTISNVQSEDLADYFCQQYSSYPLTFGAGTKLELKRGGGGSGGGGSGGGGSGGGGSQVQ 134
Query: 141 SEETSGDMMVPEGGSAKLVCKAKGY 165
+E G+++ P G S KL CKA GY
Sbjct: 135 LQEPGGELVRP-GASVKLSCKASGY 158
>pdb|3UTZ|A Chain A, Endogenous-Like Inhibitory Antibodies Targeting Activated
Metalloproteinase Motifs Show Therapeutic Potential
pdb|3UTZ|D Chain D, Endogenous-Like Inhibitory Antibodies Targeting Activated
Metalloproteinase Motifs Show Therapeutic Potential
pdb|3UTZ|E Chain E, Endogenous-Like Inhibitory Antibodies Targeting Activated
Metalloproteinase Motifs Show Therapeutic Potential
Length = 219
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 200 LSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCT 236
L +++V ++G Y C A+ VPPT L + T
Sbjct: 78 LKISRVEAEDLGVYYCFQASHVPPTFGSGTKLEIKRT 114
>pdb|2X1X|R Chain R, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2 In A Tetragonal Crystal Form
pdb|2X1W|L Chain L, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
pdb|2X1W|M Chain M, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
pdb|2X1W|N Chain N, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
pdb|2X1W|O Chain O, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
Length = 213
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 165 YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
YP+ K ++ N+++ +S S K F L++ VTRS+ G Y C A++G+
Sbjct: 143 YPSSKHQHKKLVNRDLKTQSG--SEMKKFL---STLTIDGVTRSDQGLYTCAASSGL 194
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQ 127
TL I V R D+G Y C ++ MTK+
Sbjct: 172 TLTIDGVTRSDQGLYTCAASSGLMTKK 198
>pdb|1NEZ|G Chain G, The Crystal Structure Of A TlCD8AA COMPLEX AT 2.1A
Resolution:implications For Memory T Cell Generation,
Co-Receptor Preference And Affinity
pdb|1NEZ|H Chain H, The Crystal Structure Of A TlCD8AA COMPLEX AT 2.1A
Resolution:implications For Memory T Cell Generation,
Co-Receptor Preference And Affinity
Length = 128
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 86 NNARL-SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVV 134
N+++L S + N + L + +E+ GYY C V +N + M F VV
Sbjct: 70 NSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSV---MYFSSVV 116
>pdb|4FFV|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFV|H Chain H, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFW|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
pdb|4FFW|H Chain H, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
Length = 217
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 143 ETSGDMMVPEGGSAKLVCKAKGYPTP--KITWRREDNKE 179
+ SG +V G S K+ CKA GY I W ++ N +
Sbjct: 5 QQSGPELVKPGASVKISCKASGYSFTDYNINWMKQSNGK 43
>pdb|3DMM|C Chain C, Crystal Structure Of The Cd8 Alpha BetaH-2dd Complex
Length = 166
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 86 NNARL-SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVV 134
N+++L S + N + L + +E+ GYY C V +N + M F VV
Sbjct: 75 NSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSV---MYFSSVV 121
>pdb|1BQH|G Chain G, Murine Cd8aa Ectodomain Fragment In Complex With H-2kbVSV8
pdb|1BQH|H Chain H, Murine Cd8aa Ectodomain Fragment In Complex With H-2kbVSV8
pdb|1BQH|I Chain I, Murine Cd8aa Ectodomain Fragment In Complex With H-2kbVSV8
pdb|1BQH|K Chain K, Murine Cd8aa Ectodomain Fragment In Complex With H-2kbVSV8
Length = 129
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 86 NNARL-SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVV 134
N+++L S + N + L + +E+ GYY C V +N + M F VV
Sbjct: 70 NSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSV---MYFSSVV 116
>pdb|2ATP|A Chain A, Crystal Structure Of A Cd8ab Heterodimer
pdb|2ATP|C Chain C, Crystal Structure Of A Cd8ab Heterodimer
Length = 122
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 86 NNARL-SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVV 134
N+++L S + N + L + +E+ GYY C V +N + M F VV
Sbjct: 70 NSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSV---MYFSSVV 116
>pdb|4HKB|N Chain N, Ch67 Fab (unbound) From The Ch65-67 Lineage
pdb|4HKB|B Chain B, Ch67 Fab (unbound) From The Ch65-67 Lineage
pdb|4HKB|D Chain D, Ch67 Fab (unbound) From The Ch65-67 Lineage
pdb|4HKB|F Chain F, Ch67 Fab (unbound) From The Ch65-67 Lineage
pdb|4HKB|H Chain H, Ch67 Fab (unbound) From The Ch65-67 Lineage
pdb|4HKB|K Chain K, Ch67 Fab (unbound) From The Ch65-67 Lineage
Length = 213
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 22/103 (21%)
Query: 17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAV 76
+V++A G+ A TC NN+G RV F V + D+
Sbjct: 8 SVSVAPGQTATITCGGNNIGRKRVD--------------WFQQKPGQAPVLVVYEDSDRP 53
Query: 77 LAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV 119
I E +N+ T TL I V D Y CQV
Sbjct: 54 SGIPERFSDSNS--------GTTATLTISRVEAGDEADYYCQV 88
>pdb|1UZ6|F Chain F, Anti-Lewis X Fab Fragment Uncomplexed
pdb|1UZ6|H Chain H, Anti-Lewis X Fab Fragment Uncomplexed
pdb|1UZ6|P Chain P, Anti-Lewis X Fab Fragment Uncomplexed
pdb|1UZ6|W Chain W, Anti-Lewis X Fab Fragment Uncomplexed
Length = 217
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 19/95 (20%)
Query: 145 SGDMMVPEGGSAKLVCKAKGY-------------PTPKITWRREDNKEIIVRSNPPSSQK 191
SG +V GGS KL C A G+ P + W E N + + PS +
Sbjct: 7 SGGGLVQPGGSQKLSCAASGFDFSGYWMSWVRQAPGKGLEWIGEINPDSSTINYTPSLKD 66
Query: 192 VFSVESE------VLSLTKVTRSEMGAYQCIAANG 220
F + + L ++KV + Y C G
Sbjct: 67 KFIISRDNAKNTLYLQMSKVRSEDTALYYCARETG 101
>pdb|1LK3|H Chain H, Engineered Human Interleukin-10 Monomer Complexed To 9d7
Fab Fragment
pdb|1LK3|I Chain I, Engineered Human Interleukin-10 Monomer Complexed To 9d7
Fab Fragment
Length = 219
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 21/97 (21%)
Query: 145 SGDMMVPEGGSAKLVCKAKGYPTPK--ITWRREDNK---EIIVRSNPPSSQKVF------ 193
SG +V G S KL CKA GY I W ++ + E I NP S +
Sbjct: 7 SGAALVKPGASVKLSCKASGYTFTDFYIHWVKQSHGKSLEWIGYINPNSGYTNYNEKFKN 66
Query: 194 --------SVESEVLSLTKVTRSEMGAYQCIAANGVP 222
S + + L+++T + Y C GVP
Sbjct: 67 KATLTVDKSTSTGYMELSRLTSEDSANYSC--TRGVP 101
>pdb|3RBG|A Chain A, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|B Chain B, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|C Chain C, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|D Chain D, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
Length = 124
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 77 LAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMC 117
+ ++E+ + N++ + H+ AN ++ + +V +D G Y C
Sbjct: 43 IFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKC 83
>pdb|1LO4|H Chain H, Retro-Diels-Alderase Catalytic Antibody 9d9
Length = 220
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 143 ETSGDMMVPEGGSAKLVCKAKGYP--TPKITWRRE 175
ET GD++ P GGS L C+A G+ T ++W R+
Sbjct: 6 ETGGDLVKP-GGSLTLSCEASGFTLRTYGMSWVRQ 39
>pdb|2COQ|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 108
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 78 AIHEHVITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQV 119
+ E I+ R S T ++ +N+ +L IR +R ED G Y C+
Sbjct: 43 STKEQTISIGGRYSETVDEGSNSASLTIRDLRVEDSGTYKCKA 85
>pdb|2IEL|A Chain A, Crystal Structure Of Tt0030 From Thermus Thermophilus
pdb|2IEL|B Chain B, Crystal Structure Of Tt0030 From Thermus Thermophilus
Length = 138
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 197 SEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
S +L++ + + GAYQ I + +PP +S+ L L VH
Sbjct: 83 SPLLAIEEELLAHPGAYQGIVLSTLPPGLSRWLRLDVH 120
>pdb|2ARJ|R Chain R, Cd8alpha-Alpha In Complex With Yts 105.18 Fab
pdb|2ARJ|Q Chain Q, Cd8alpha-Alpha In Complex With Yts 105.18 Fab
Length = 123
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 86 NNARL-SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVV 134
N+++L S + N + L + +E+ GYY C V +N + M F VV
Sbjct: 70 NSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSV---MYFSSVV 116
>pdb|1QNZ|H Chain H, Nmr Structure Of The 0.5b Anti-Hiv Antibody Complex With
The Gp120 V3 Peptide
Length = 119
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 143 ETSGDMMVPEGGSAKLVCKAKGY--PTPKITWRREDN 177
+ SG +V G S K+ CKA GY T I W ++++
Sbjct: 5 QQSGAELVKPGASVKMSCKASGYTFTTYPIEWMKQNH 41
>pdb|2ESV|E Chain E, Structure Of The Hla-E-VmaprtlilKK50.4 TCR COMPLEX
Length = 240
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQ---------MAFLEVVIPPDISSEETSGDMMVP 151
TL ++ ED G Y C + + T+ + L+ V PP+++ E S + +
Sbjct: 74 TLKVQPAELEDSGVYFCASSQDRDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPS-EAEIS 132
Query: 152 EGGSAKLVCKAKGY 165
A LVC A G+
Sbjct: 133 HTQKATLVCLATGF 146
>pdb|1BOG|A Chain A, Anti-P24 (Hiv-1) Fab Fragment Cb41 Complexed With An
Epitope-Homologous Peptide
Length = 214
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 14/134 (10%)
Query: 97 ANTWTLNIRSVRREDRGYYMC-QVNTNPMT----KQMAFLEVVIPPDISSEETSGDMMVP 151
T++L I S+ ED G Y C Q + P+T ++ P +S S + +
Sbjct: 68 GQTYSLTISSLEYEDMGIYYCLQYDDFPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLT- 126
Query: 152 EGGSAKLVCKAKG-YPTP-----KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKV 205
G+A +VC YP KI N + + S +S+ S L+LTK
Sbjct: 127 -SGTASVVCFLNNFYPKEINVKWKIDGSERQNGVLDSWTEQDSKDSTYSM-SSTLTLTKD 184
Query: 206 TRSEMGAYQCIAAN 219
+Y C A +
Sbjct: 185 EYERHNSYTCEATH 198
>pdb|1YMM|E Chain E, TcrHLA-Dr2bMBP-Peptide Complex
Length = 249
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 21/98 (21%)
Query: 81 EHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN--TNPMTKQMAF-------- 130
+ + N+A L+++ TL + S ED +Y+C T+ + F
Sbjct: 65 DKFLINHASLTLS-------TLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTV 117
Query: 131 ---LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY 165
L+ V PP+++ E S + + A LVC A G+
Sbjct: 118 LEDLKNVFPPEVAVFEPS-EAEISHTQKATLVCLATGF 154
>pdb|3E8U|L Chain L, Crystal Structure And Thermodynamic Analysis Of Diagnostic
Fab 106.3 Complexed With Bnp 5-13 (C10a) Reveal Basis Of
Selective Molecular Recognition
Length = 216
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 49/129 (37%), Gaps = 14/129 (10%)
Query: 100 WTLNIRSVRREDRGYYMC-QVNTNPMT----KQMAFLEVVIPPDISSEETSGDMMVPEGG 154
+ LNI V ED Y C Q N +P T ++ P +S S + + G
Sbjct: 75 FNLNIHPVEEEDAATYYCQQSNEDPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLT--SG 132
Query: 155 SAKLVCKAKG-YPTP-----KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS 208
A +VC YP KI N + ++ S +S+ S L+LTK
Sbjct: 133 GASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM-SSTLTLTKDEYE 191
Query: 209 EMGAYQCIA 217
+Y C A
Sbjct: 192 RHNSYTCEA 200
>pdb|2WBJ|D Chain D, Tcr Complex
pdb|2WBJ|H Chain H, Tcr Complex
Length = 279
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 21/98 (21%)
Query: 81 EHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN--TNPMTKQMAF-------- 130
+ + N+A L+++ TL + S ED +Y+C T+ + F
Sbjct: 88 DKFLINHASLTLS-------TLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTV 140
Query: 131 ---LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY 165
L+ V PP+++ E S + + A LVC A G+
Sbjct: 141 TEDLKNVFPPEVAVFEPS-EAEISHTQKATLVCLATGF 177
>pdb|1IGF|H Chain H, Crystal Structures Of An Antibody To A Peptide And Its
Complex With Peptide Antigen At 2.8 Angstroms
pdb|2IGF|H Chain H, Crystal Structures Of An Antibody To A Peptide And Its
Complex With Peptide Antigen At 2.8 Angstroms
pdb|1IGF|J Chain J, Crystal Structures Of An Antibody To A Peptide And Its
Complex With Peptide Antigen At 2.8 Angstroms
Length = 221
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 143 ETSGDMMVPEGGSAKLVCKAKGYPTPK--ITWRRE 175
E+ GD++ P GGS KL C A G+ + ++W R+
Sbjct: 6 ESGGDLVKP-GGSLKLSCAASGFTFSRCAMSWVRQ 39
>pdb|2O5X|H Chain H, Crystal Structure Of 1e9 Leuh47trpARGH100TRP, AN
ENGINEERED DIELS- Alderase Fab With Nm Steroid-Binding
Affinity
pdb|2O5Y|H Chain H, Crystal Structure Of The 1e9 Leuh47trpARGH100TRP FAB
PROGESTERONE Complex
pdb|2O5Z|H Chain H, Crystal Structure Of The 1e9 Leuh47trpARGH100TRP FAB
5-Beta- Androstane-3,17-Dione Complex
Length = 227
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 97 ANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVP----- 151
A T L I +++ ED Y C T + M + +SS T G + P
Sbjct: 76 ATTAYLQINNLKNEDTATYFCARGTT-IVWAMDYWGQGTSVTVSSASTKGPSVFPLAPSS 134
Query: 152 ---EGGSAKLVCKAKGY-PTP-KITW 172
GG+A L C K Y P P ++W
Sbjct: 135 KSTSGGTAALGCLVKDYFPEPVTVSW 160
>pdb|1J1P|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant Ls91a Complexed
With Hen Egg White Lysozyme
Length = 107
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 100 WTLNIRSVRREDRGYYMC-QVNTNPMT 125
+TL+I SV ED G Y C Q N+ P T
Sbjct: 71 FTLSINSVETEDFGMYFCQQANSWPYT 97
>pdb|1H0D|A Chain A, Crystal Structure Of Human Angiogenin In Complex With Fab
Fragment Of Its Monoclonal Antibody Mab 26-2f
Length = 216
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 15/149 (10%)
Query: 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMT----KQMAFLEVVIPPDISSE 142
AR S + + + ++LNI + +D Y CQ + P+T ++ P +S
Sbjct: 64 ARFSGSGSGTD-FSLNIHPMEEDDTAMYFCQQSKEVPLTFGAGTKLELKRADAAPTVSIF 122
Query: 143 ETSGDMMVPEGGSAKLVCKAKG-YPTP-----KITWRREDNKEIIVRSNPPSSQKVFSVE 196
S + + G A +VC YP KI N + ++ S +S+
Sbjct: 123 PPSSEQLT--SGGASVVCFLNNFYPKDINVRWKIDGSERQNGVLNSWTDQDSKDSTYSM- 179
Query: 197 SEVLSLTKVTRSEMGAYQCIAANGVPPTV 225
S L+LTK +Y C A + P V
Sbjct: 180 SSTLTLTKDEYERHNSYTCEATHAASPIV 208
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 16/129 (12%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQM-AFLEVV------IPPDISSEETSGDMMVPEG 153
TL I S R D G +MC N + + LEVV I P I++ + V +G
Sbjct: 274 TLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTT-----VFVNDG 328
Query: 154 GSAKLVCKAKGYPTPK-ITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEM 210
+ L+ + + +P P+ W + + P S+ ++ SE L LT++ +E
Sbjct: 329 ENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSE-LHLTRLKGTEG 387
Query: 211 GAYQCIAAN 219
G Y + +N
Sbjct: 388 GTYTFLVSN 396
>pdb|1MI5|E Chain E, The Crystal Structure Of Lc13 Tcr In Complex With
Hlab8-Ebv Peptide Complex
pdb|3KPR|E Chain E, Crystal Structure Of The Lc13 Tcr In Complex With Hla
B4405 Bound To Eeylkawtf A Mimotope
pdb|3KPR|J Chain J, Crystal Structure Of The Lc13 Tcr In Complex With Hla
B4405 Bound To Eeylkawtf A Mimotope
pdb|3KPS|E Chain E, Crystal Structure Of The Lc13 Tcr In Complex With Hla
B4405 Bound To Eeylqafty A Self Peptide From The Abcd3
Protein
Length = 241
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQM----------AFLEVVIPPDISSEETSGDMMV 150
TL I+ ++ED Y+C + +Q L+ V PP+++ E S + +
Sbjct: 74 TLKIQRTQQEDSAVYLCASSLGQAYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPS-EAEI 132
Query: 151 PEGGSAKLVCKAKGY 165
A LVC A G+
Sbjct: 133 SHTQKATLVCLATGF 147
>pdb|3O2V|H Chain H, Crystal Structure Of 1e9 Phel89serLEUH47TRPMETH100BPHE, AN
Engineered Diels-Alderase Fab With Modified Specificity
And Catalytic Activity
pdb|3O2W|H Chain H, Crystal Structure Of The 1e9 Phel89serLEUH47TRPMETH100BPHE
FAB IN Complex With A 39a11 Transition State Analog
Length = 227
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 97 ANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVP----- 151
A T L I +++ ED Y C T + + + +SS T G + P
Sbjct: 76 ATTAYLQINNLKNEDTATYFCARGTT-IVRAFDYWGQGTSVTVSSASTKGPSVFPLAPSS 134
Query: 152 ---EGGSAKLVCKAKGY-PTP-KITW 172
GG+A L C K Y P P ++W
Sbjct: 135 KSTSGGTAALGCLVKDYFPEPVTVSW 160
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 19/139 (13%)
Query: 94 HNDAN---TWTLNIRSVRREDRGYYMCQVNTNPMTKQM-AFLEVV------IPPDISSEE 143
H D N TL I S R D G +MC N + + LEVV I P I++
Sbjct: 239 HGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTT- 297
Query: 144 TSGDMMVPEGGSAKLVCKAKGYPTPK-ITWRREDNKEIIVRSNPPSSQKVFSVE--SEVL 200
+ V +G + L+ + + +P P+ W + + P S+ ++ SE L
Sbjct: 298 ----VFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSE-L 352
Query: 201 SLTKVTRSEMGAYQCIAAN 219
LT++ +E G Y + +N
Sbjct: 353 HLTRLKGTEGGTYTFLVSN 371
>pdb|1H5B|C Chain C, T Cell Receptor Valpha11 (Av11s5) Domain
Length = 113
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 66 VAWIKADTKAVLAIHEHVITN---NARL--SVTHNDANTWTLNIRSVRREDRGYYMCQVN 120
V W + +++ L ++ + N RL + + TL+IR + ED G Y C
Sbjct: 32 VQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAAE 91
Query: 121 TNPMTKQMAF 130
+ + Q+ F
Sbjct: 92 ASSGSWQLIF 101
>pdb|2XQB|H Chain H, Crystal Structure Of Anti-Il-15 Antibody In Complex With
Human Il-15
Length = 236
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 15/86 (17%)
Query: 102 LNIRSVRREDRGYYMCQVN--TNPMTKQMAFLEVVIPP---DISSEETSGDMMVP----- 151
+ +RS+R +D Y C + P+ + +A+ + +SS T G + P
Sbjct: 81 MELRSLRSDDTAVYYCARDPAAWPLQQSLAWFDPWGQGTMVTVSSASTKGPSVFPLAPSS 140
Query: 152 ---EGGSAKLVCKAKGY-PTP-KITW 172
GG+A L C K Y P P ++W
Sbjct: 141 KSTSGGTAALGCLVKDYFPEPVTVSW 166
>pdb|1KGC|E Chain E, Immune Receptor
Length = 242
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQM----------AFLEVVIPPDISSEETSGDMMV 150
TL I+ ++ED Y+C + +Q L+ V PP+++ E S + +
Sbjct: 75 TLKIQRTQQEDSAVYLCASSLGQAYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPS-EAEI 133
Query: 151 PEGGSAKLVCKAKGY 165
A LVC A G+
Sbjct: 134 SHTQKATLVCLATGF 148
>pdb|4F2M|B Chain B, Crystal Structure Of A Tgev Coronavirus Spike Fragment In
Complex With The Tgev Neutralizing Monoclonal Antibody
1af10
pdb|4F2M|D Chain D, Crystal Structure Of A Tgev Coronavirus Spike Fragment In
Complex With The Tgev Neutralizing Monoclonal Antibody
1af10
Length = 214
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 51/129 (39%), Gaps = 14/129 (10%)
Query: 100 WTLNIRSVRREDRGYYMC-QVNTNPMT----KQMAFLEVVIPPDISSEETSGDMMVPEGG 154
+TLNI SV ED Y C Q ++ P T ++ P +S S + + G
Sbjct: 71 FTLNINSVESEDIADYFCQQTDSWPTTFGAGTKLELKRADAAPTVSIFPPSSEQLT--SG 128
Query: 155 SAKLVCKAKG-YPTP-----KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS 208
A +VC YP KI N + ++ S +S+ S L+LTK
Sbjct: 129 GASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM-SSTLTLTKDEYE 187
Query: 209 EMGAYQCIA 217
+Y C A
Sbjct: 188 RHNSYTCEA 196
>pdb|3OF6|A Chain A, Human Pre-T Cell Receptor Crystal Structure
pdb|3OF6|B Chain B, Human Pre-T Cell Receptor Crystal Structure
pdb|3OF6|C Chain C, Human Pre-T Cell Receptor Crystal Structure
Length = 255
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQM----------AFLEVVIPPDISSEETSGDMMV 150
TL I+ ++ED Y+C + +Q L+ V PP+++ E S + +
Sbjct: 79 TLKIQRTQQEDSAVYLCASSLGQAYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPS-EAEI 137
Query: 151 PEGGSAKLVCKAKGY 165
A LVC A G+
Sbjct: 138 SHTQKATLVCLATGF 152
>pdb|3N9L|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide And
Nog
pdb|3N9M|A Chain A, Cekdm7a From C.Elegans, Alone
pdb|3N9M|C Chain C, Cekdm7a From C.Elegans, Alone
pdb|3N9N|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2 Peptide
And Nog
pdb|3N9O|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k9me2 Peptide And Nog
pdb|3N9P|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2 Peptide
And Nog
pdb|3N9Q|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k27me2 Peptide And Nog
pdb|3PUQ|A Chain A, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUQ|C Chain C, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUR|A Chain A, Cekdm7a From C.Elegans, Complex With D-2-Hg
pdb|3PUR|C Chain C, Cekdm7a From C.Elegans, Complex With D-2-Hg
Length = 528
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 40 VSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE 81
++ S TD HV+ GGS V+ K+ +I A T+ A ++
Sbjct: 304 MAGSYTDFHVDFGGSSVYYHILKGEKIFYIAAPTEQNFAAYQ 345
>pdb|3DGG|A Chain A, Crystal Structure Of Fabox108
pdb|3DGG|C Chain C, Crystal Structure Of Fabox108
Length = 217
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 49/128 (38%), Gaps = 13/128 (10%)
Query: 100 WTLNIRSVRREDRGYYMCQVNTNPMT----KQMAFLEVVIPPDISSEETSGDMMVPEGGS 155
+TLNI V ED Y CQ + +T ++ P +S S + + G
Sbjct: 75 FTLNIHPVEEEDAATYYCQHSRELLTFGAGTKLELKRADAAPTVSIFPPSSEQLT--SGG 132
Query: 156 AKLVCKAKG-YPTP-----KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSE 209
A +VC YP KI N + ++ S +S+ S L+LTK
Sbjct: 133 ASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM-SSTLTLTKDEYER 191
Query: 210 MGAYQCIA 217
+Y C A
Sbjct: 192 HNSYTCEA 199
>pdb|3M8O|L Chain L, Human Iga1 Fab Fragment
pdb|3QNX|A Chain A, Orthorhombic Form Of Human Iga1 Fab Fragment, Sharing Same
Fv As Igg
pdb|3QNY|A Chain A, Monoclinic Form Of Human Iga1 Fab Fragment, Sharing Same
Fv As Igg
pdb|3QNY|C Chain C, Monoclinic Form Of Human Iga1 Fab Fragment, Sharing Same
Fv As Igg
pdb|3QNZ|A Chain A, Orthorhombic Form Of Igg1 Fab Fragment (in Complex With
Antigenic Tubulin Peptide) Sharing Same Fv As Iga
pdb|3QO0|A Chain A, Monoclinic Form Of Igg1 Fab Fragment (In Complex With
Antigenic Peptide) Sharing Same Fv As Iga
pdb|3QO1|A Chain A, Monoclinic Form Of Igg1 Fab Fragment (apo Form) Sharing
Same Fv As Iga
Length = 219
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 19/144 (13%)
Query: 100 WTLNIRSVRREDRGYYMCQVNTN-PMT-KQMAFLEV---VIPPDISSEETSGDMMVPEGG 154
+TL I V ED G Y C N P+T Q LE+ V P + S + + + G
Sbjct: 76 FTLKIIRVEAEDAGTYYCMQNKQTPLTFGQGTRLEIKRTVAAPSVFIFPPSDEQL--KSG 133
Query: 155 SAKLVCKAKG-YP-TPKITWRRE------DNKEIIVRSNPPSSQKVFSVESEVLSLTKVT 206
+A +VC YP K+ W+ + +++E + + S +S+ S L+L+K
Sbjct: 134 TASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQD--SKDSTYSL-SSTLTLSKAD 190
Query: 207 RSEMGAYQC-IAANGVPPTVSKRL 229
+ Y C + G+ V+K
Sbjct: 191 YEKHKVYACEVTHQGLSSPVTKSF 214
>pdb|2Q87|A Chain A, The Crystal Structure Of The Human Irp60 Ectodomain
pdb|2Q87|B Chain B, The Crystal Structure Of The Human Irp60 Ectodomain
pdb|2Q87|C Chain C, The Crystal Structure Of The Human Irp60 Ectodomain
Length = 110
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 87 NARLSVTHNDAN-TWTLNIRSVRREDRGYYMCQVNT 121
N R+S+ + AN ++T+ + ++ ED G Y C V+T
Sbjct: 54 NGRVSIRDSPANLSFTVTLENLTEEDAGTYWCGVDT 89
>pdb|4FOM|A Chain A, Crystal Structure Of Human Nectin-3 Full Ectodomain
(D1-D3)
Length = 308
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 95 NDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGG 154
NDA T+ + ++ D G Y+C+ T P+ + V + + + G + +GG
Sbjct: 72 NDA---TITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGG 128
Query: 155 S---AKLVCKAKGYPTPKITWRRE 175
+ A + A G P I W +
Sbjct: 129 NETVAAICIAATGKPVAHIDWEGD 152
>pdb|4AG4|H Chain H, Crystal Structure Of A Ddr1-Fab Complex
Length = 215
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 143 ETSGDMMVPEGGSAKLVCKAKGYPTPKITW 172
+ SG +V G S KL CKA GY T I+W
Sbjct: 5 QESGAELVRPGASVKLSCKASGY-TFSISW 33
>pdb|3KG5|A Chain A, Crystal Structure Of Human Ig-Beta Homodimer
pdb|3KG5|B Chain B, Crystal Structure Of Human Ig-Beta Homodimer
Length = 134
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 81 EHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122
+ + R+ + N++ TL I+ +R ED G Y CQ N
Sbjct: 62 QQLKLEKGRMEESQNESLA-TLTIQGIRFEDNGIYFCQQKCN 102
>pdb|1I9I|H Chain H, Native Crystal Structure Of The Recombinant Monoclonal
Wild Type Anti-Testosterone Fab Fragment
pdb|1I9J|H Chain H, Testosterone Complex Structure Of The Recombinant
Monoclonal Wild Type Anti-Testosterone Fab Fragment
Length = 220
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 145 SGDMMVPEGGSAKLVCKAKG--YPTPKITWRRE 175
SG +V GGS KL C A G + T ++W R+
Sbjct: 7 SGGGLVKPGGSLKLSCAASGFTFSTYALSWVRQ 39
>pdb|1CFS|A Chain A, Anti-P24 (Hiv-1) Fab Fragment Cb41 Complexed With An
Epitope-Unrelated Peptide
pdb|1CFT|A Chain A, Anti-P24 (Hiv-1) Fab Fragment Cb41 Complexed With An
Epitope-Unrelated D-Peptide
pdb|1CFN|A Chain A, Anti-P24 (Hiv-1) Fab Fragment Cb41 Complexed With An
Epitope-Related Peptide
pdb|1CFQ|A Chain A, Anti-P24 (Hiv-1) Fab Fragment Cb41
pdb|1HH6|A Chain A, Anti-P24 (Hiv-1) Fab Fragment Cb41 Complexed With A
Peptide
pdb|1HH9|A Chain A, Anti-P24 (Hiv-1) Fab Fragment Cb41 Complexed With A
Peptide
pdb|1HI6|A Chain A, Anti-P24 (Hiv-1) Fab Fragment Cb41 Complexed With A
Peptide
Length = 214
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 52/134 (38%), Gaps = 14/134 (10%)
Query: 97 ANTWTLNIRSVRREDRGYYMC-QVNTNPMT----KQMAFLEVVIPPDISSEETSGDMMVP 151
T++L I S+ ED G Y C Q + P+T ++ P +S S + +
Sbjct: 68 GQTYSLTISSLEYEDMGIYYCLQYDDFPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLT- 126
Query: 152 EGGSAKLVCKAKG-YPTP-----KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKV 205
G A +VC YP KI N + + S +S+ S L+LTK
Sbjct: 127 -SGGASVVCFLNNFYPKEINVKWKIDGSERQNGVLDSWTEQDSKDSTYSM-SSTLTLTKD 184
Query: 206 TRSEMGAYQCIAAN 219
+Y C A +
Sbjct: 185 EYERHNSYTCEATH 198
>pdb|1AXS|L Chain L, Mature Oxy-Cope Catalytic Antibody With Hapten
pdb|1AXS|A Chain A, Mature Oxy-Cope Catalytic Antibody With Hapten
Length = 211
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 19/144 (13%)
Query: 100 WTLNIRSVRREDRGYYMC-QVNTNPMT----KQMAFLEVVIPPDISSEETSGDMMVPEGG 154
++L I S+ ED G Y C Q + P T ++ V P + S + + + G
Sbjct: 71 YSLTISSLEYEDMGIYYCLQYDEFPYTFGSGTKLEIKRTVAAPSVFIFPPSDEQL--KSG 128
Query: 155 SAKLVCKAKG-YP-TPKITWRRE------DNKEIIVRSNPPSSQKVFSVESEVLSLTKVT 206
+A +VC YP K+ W+ + +++E + + S +S+ S L+L+K
Sbjct: 129 TASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQD--SKDSTYSL-SSTLTLSKAD 185
Query: 207 RSEMGAYQC-IAANGVPPTVSKRL 229
+ Y C + G+ V+K
Sbjct: 186 YEKHKVYACEVTHQGLSSPVTKSF 209
>pdb|3FMG|L Chain L, Structure Of Rotavirus Outer Capsid Protein Vp7 Trimer In
Co A Neutralizing Fab
Length = 211
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 28/138 (20%)
Query: 100 WTLNIRSVRREDRGYYMCQVNTNP-----------MTKQMAFLEVVIPPDISSEETSGDM 148
++L I SV+ ED G Y CQ + P + + A V I P S + TS
Sbjct: 71 FSLKISSVQPEDFGTYYCQHHNGPPLTFGAGTKLELKRADAAPTVSIFPPSSKQLTS--- 127
Query: 149 MVPEGGSAKLVCKAKGYPTPK---ITWR----REDNKEIIVRSNPPSSQKVFSVESEVLS 201
G A +VC + PK + W+ N + ++ S +S+ S L+
Sbjct: 128 -----GGASVVCFLNNF-YPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM-SSTLT 180
Query: 202 LTKVTRSEMGAYQCIAAN 219
LTK +Y C A +
Sbjct: 181 LTKDEYERHNSYTCEATH 198
>pdb|1IBG|L Chain L, Structure And Specificity Of The Anti-Digoxin Antibody
40-50
Length = 217
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 16/132 (12%)
Query: 100 WTLNIRSVRREDRGYYMCQVNTN-PMT----KQMAFLEVVIPPDISSEETSGDMMVPEGG 154
+TLNI V ED Y CQ + P+T ++ P +S S + + G
Sbjct: 74 FTLNIHPVEEEDAATYYCQHSREYPLTFGAGTELELKRADAAPTVSIFPPSSEQLT--SG 131
Query: 155 SAKLVCKAKGYPTPK---ITWR----REDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTR 207
A +VC + PK + W+ N + ++ S +S+ S L+LTK
Sbjct: 132 GASVVCFLNNF-YPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM-SSTLTLTKDEY 189
Query: 208 SEMGAYQCIAAN 219
+Y C A +
Sbjct: 190 ERHNSYTCEATH 201
>pdb|3KHO|A Chain A, Crystal Structure Of Murine Ig-Beta (Cd79b) Homodimer
pdb|3KHO|B Chain B, Crystal Structure Of Murine Ig-Beta (Cd79b) Homodimer
pdb|3KHQ|A Chain A, Crystal Structure Of Murine Ig-Beta (Cd79b) In The
Monomeric Form
Length = 133
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 81 EHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQ 118
+ +++ R+ T N + +TL I++++ ED G Y C+
Sbjct: 59 QELVSEEGRIVQTQN-GSVYTLTIQNIQYEDNGIYFCK 95
>pdb|2FGW|L Chain L, X-Ray Structures Of Fragments From Binding And Nonbinding
Versions Of A Humanized Anti-Cd18 Antibody: Structural
Indications Of The Key Role Of Vh Residues 59 To 65
Length = 214
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 19/144 (13%)
Query: 100 WTLNIRSVRREDRGYYMCQV-NTNPMT----KQMAFLEVVIPPDISSEETSGDMMVPEGG 154
+TL I S++ ED Y CQ NT P T ++ V P + S + + + G
Sbjct: 71 YTLTISSLQPEDFATYYCQQGNTLPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQL--KSG 128
Query: 155 SAKLVCKAKG-YP-TPKITWRRE------DNKEIIVRSNPPSSQKVFSVESEVLSLTKVT 206
+A +VC YP K+ W+ + +++E + + S +S+ S L+L+K
Sbjct: 129 TASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQD--SKDSTYSL-SSTLTLSKAD 185
Query: 207 RSEMGAYQC-IAANGVPPTVSKRL 229
+ Y C + G+ V+K
Sbjct: 186 YEKHKVYACEVTHQGLSSPVTKSF 209
>pdb|1PSK|H Chain H, The Crystal Structure Of An Fab Fragment That Binds To The
Melanoma-Associated Gd2 Ganglioside
Length = 209
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 17/96 (17%)
Query: 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGD 147
A L+V H + T + +RS+ ED Y C + Q L V SS +T+
Sbjct: 68 ATLTV-HKSSTTAYMELRSLTSEDSAVYYCTSKSFDYWGQGTTLTV------SSAKTTAP 120
Query: 148 MMVP--------EGGSAKLVCKAKGY-PTP-KITWR 173
+ P G + L C KGY P P +TW
Sbjct: 121 SVYPLAPVCGDTTGSAVTLGCLVKGYFPEPVTLTWN 156
>pdb|1CR9|H Chain H, Crystal Structure Of The Anti-Prion Fab 3f4
pdb|1CU4|H Chain H, Crystal Structure Of The Anti-Prion Fab 3f4 In Complex
With Its Peptide Epitope
Length = 217
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 16/86 (18%)
Query: 97 ANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVP----- 151
+NT L + S+ ED Y C + + Q L V SS +T+ + P
Sbjct: 76 SNTAYLQLSSLTSEDTAVYYCNADLHDYWGQGTTLTV------SSAKTTAPSVYPLAPVC 129
Query: 152 ---EGGSAKLVCKAKGY-PTP-KITW 172
G S L C KGY P P +TW
Sbjct: 130 GDTTGSSVTLGCLVKGYFPEPVTLTW 155
>pdb|1EJO|H Chain H, Fab Fragment Of Neutralising Monoclonal Antibody 4c4
Complexed With G-H Loop From Fmdv
Length = 220
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 143 ETSGDMMVPEGGSAKLVCKAKGYPTPKIT--WRRE 175
E+ GD++ P GGS KL C A G+ T W R+
Sbjct: 6 ESGGDLVKP-GGSLKLSCAASGFTFSSYTMSWVRQ 39
>pdb|1D5I|L Chain L, Unliganded Germline Precursor Of An Oxy-Cope Catalytic
Antibody
pdb|1D6V|L Chain L, Conformation Effects In Biological Catalysis Introduced By
Oxy-Cope Antibody Maturation
Length = 211
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 19/144 (13%)
Query: 100 WTLNIRSVRREDRGYYMC-QVNTNPMT----KQMAFLEVVIPPDISSEETSGDMMVPEGG 154
++L I S+ ED G Y C Q + P T ++ V P + S + + + G
Sbjct: 71 YSLTISSLEYEDMGIYYCLQYDEFPYTFGSGTKLEIKRTVAAPSVFIFPPSDEQL--KSG 128
Query: 155 SAKLVCKAKG-YP-TPKITWRRE------DNKEIIVRSNPPSSQKVFSVESEVLSLTKVT 206
+A +VC YP K+ W+ + +++E + + S +S+ S L+L+K
Sbjct: 129 TASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQD--SKDSTYSL-SSTLTLSKAD 185
Query: 207 RSEMGAYQC-IAANGVPPTVSKRL 229
+ Y C + G+ V+K
Sbjct: 186 YEKHKVYACEVTHQGLSSPVTKSF 209
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 10/109 (9%)
Query: 138 DISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRRE----DNKEIIVRSN------PP 187
DI ++ M G + CKA ++W ++ K +I R+N P
Sbjct: 1 DIKMTQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPS 60
Query: 188 SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCT 236
S + L+++ + +MG Y C+ + P T L + T
Sbjct: 61 RFSGSGSGQDYSLTISSLEYEDMGIYYCLQYDEFPYTFGSGTKLEIKRT 109
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 150 VPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSE 209
+ EG + L C G P P+++W + E + S+ + K + + ++ V+ ++
Sbjct: 234 IQEGKALNLTCNVWGDPPPEVSWLK---NEKALASDDHCNLKFEAGRTAYFTINGVSTAD 290
Query: 210 MGAYQCIAAN 219
G Y + N
Sbjct: 291 SGKYGLVVKN 300
>pdb|1D5B|A Chain A, Unliganded Mature Oxy-Cope Catalytic Antibody
pdb|1D5B|L Chain L, Unliganded Mature Oxy-Cope Catalytic Antibody
Length = 211
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 19/144 (13%)
Query: 100 WTLNIRSVRREDRGYYMC-QVNTNPMT----KQMAFLEVVIPPDISSEETSGDMMVPEGG 154
++L I S+ ED G Y C Q + P T ++ V P + S + + + G
Sbjct: 71 YSLTISSLEYEDMGIYYCLQYDEFPYTFGSGTKLEIKRTVAAPSVFIFPPSDEQL--KSG 128
Query: 155 SAKLVCKAKG-YP-TPKITWRRE------DNKEIIVRSNPPSSQKVFSVESEVLSLTKVT 206
+A +VC YP K+ W+ + +++E + + S +S+ S L+L+K
Sbjct: 129 TASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQD--SKDSTYSL-SSTLTLSKAD 185
Query: 207 RSEMGAYQC-IAANGVPPTVSKRL 229
+ Y C + G+ V+K
Sbjct: 186 YEKHKVYACEVTHQGLSSPVTKSF 209
>pdb|1P2C|A Chain A, Crystal Structure Analysis Of An Anti-Lysozyme Antibody
pdb|1P2C|D Chain D, Crystal Structure Analysis Of An Anti-Lysozyme Antibody
pdb|2Q76|A Chain A, Mouse Anti-Hen Egg White Lysozyme Antibody F10.6.6 Fab
Fragment
pdb|2Q76|C Chain C, Mouse Anti-Hen Egg White Lysozyme Antibody F10.6.6 Fab
Fragment
Length = 212
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 52/129 (40%), Gaps = 14/129 (10%)
Query: 100 WTLNIRSVRREDRGYYMCQVNTN-PMT----KQMAFLEVVIPPDISSEETSGDMMVPEGG 154
+TL+I SV ED G Y CQ + + P T ++ P +S S + + G
Sbjct: 71 FTLSINSVETEDFGVYFCQQSGSWPRTFGGGTKLDIKRADAAPTVSIFPPSSEQLT--SG 128
Query: 155 SAKLVCKAKG-YPTP-----KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS 208
A +VC YP KI N + ++ S +S+ S L+LTK
Sbjct: 129 GASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM-SSTLTLTKDEYE 187
Query: 209 EMGAYQCIA 217
+Y C A
Sbjct: 188 RHNSYTCEA 196
>pdb|3FFD|A Chain A, Structure Of Parathyroid Hormone-Related Protein Complexed
To A Neutralizing Monoclonal Antibody
Length = 218
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 143 ETSGDMMVPEGGSAKLVCKAKG--YPTPKITWRRE 175
E+ GD++ P GGS KL C A G + + ++W R+
Sbjct: 6 ESGGDLVKP-GGSLKLSCAASGFTFSSYGMSWIRQ 39
>pdb|2X7L|L Chain L, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|B Chain B, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|D Chain D, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|K Chain K, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|F Chain F, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|I Chain I, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
Length = 217
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 22/147 (14%)
Query: 100 WTLNIRSVRREDRGYYMCQVNTNPMTKQMAF-----LEV---VIPPDISSEETSGDMMVP 151
+TL I V+RED Y C + + AF LE+ V P + S + +
Sbjct: 71 YTLTISGVQREDAATYYCLGGYPAASYRTAFGGGTELEIIRTVAAPSVFIFPPSDEQL-- 128
Query: 152 EGGSAKLVCKAKG-YP-TPKITWRRE------DNKEIIVRSNPPSSQKVFSVESEVLSLT 203
+ G+A +VC YP K+ W+ + +++E + + S +S+ S L+L+
Sbjct: 129 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQD--SKDSTYSL-SSTLTLS 185
Query: 204 KVTRSEMGAYQC-IAANGVPPTVSKRL 229
K + Y C + G+ V+K
Sbjct: 186 KADYEKHKVYACEVTHQGLSSPVTKSF 212
>pdb|2NTF|H Chain H, Crystal Structure Of A Quorum-Quenching Antibody In
Complex With An N- Acyl-L-Homoserine Lactone Analog
pdb|2NTF|B Chain B, Crystal Structure Of A Quorum-Quenching Antibody In
Complex With An N- Acyl-L-Homoserine Lactone Analog
pdb|2OP4|H Chain H, Crystal Structure Of Quorum-Quenching Antibody 1g9
Length = 222
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 143 ETSGDMMVPEGGSAKLVCKAKGY 165
+ SG +V G S KL CKA GY
Sbjct: 5 QQSGSELVRPGASVKLSCKASGY 27
>pdb|1YUH|H Chain H, Fab Fragment
pdb|1YUH|B Chain B, Fab Fragment
Length = 218
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 143 ETSGDMMVPEGGSAKLVCKAKGY 165
+ SG +V G S KL CKA GY
Sbjct: 5 QQSGAELVKPGASVKLSCKASGY 27
>pdb|1NCA|L Chain L, Refined Crystal Structure Of The Influenza Virus N9
Neuraminidase-Nc41 Fab Complex
pdb|1NCB|L Chain L, Crystal Structures Of Two Mutant Neuraminidase-Antibody
Complexes With Amino Acid Substitutions In The Interface
pdb|1NCC|L Chain L, Crystal Structures Of Two Mutant Neuraminidase-Antibody
Complexes With Amino Acid Substitutions In The Interface
pdb|1NCD|L Chain L, Refined Crystal Structure Of The Influenza Virus N9
Neuraminidase-Nc41 Fab Complex
Length = 214
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 28/138 (20%)
Query: 100 WTLNIRSVRREDRGYYMCQVNTNP-----------MTKQMAFLEVVIPPDISSEETSGDM 148
+TL I SV+ ED Y CQ + +P + + A V I P S + TS
Sbjct: 71 YTLTISSVQAEDLALYYCQQHYSPPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTS--- 127
Query: 149 MVPEGGSAKLVCKAKGYPTPK---ITWR----REDNKEIIVRSNPPSSQKVFSVESEVLS 201
G A +VC + PK + W+ N + ++ S +S+ S L+
Sbjct: 128 -----GGASVVCFLNNF-YPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM-SSTLT 180
Query: 202 LTKVTRSEMGAYQCIAAN 219
LTK +Y C A +
Sbjct: 181 LTKDEYERHNSYTCEATH 198
>pdb|1IFH|H Chain H, A Detailed Analysis Of The Free And Bound Conformation Of
An Antibody: X-Ray Structures Of Anti-Peptide Fab
17(Slash)9 And Three Different Fab-Peptide Complexes
pdb|1HIL|B Chain B, Structural Evidence For Induced Fit As A Mechanism For
Antigen-Antibody Recognition
pdb|1HIL|D Chain D, Structural Evidence For Induced Fit As A Mechanism For
Antigen-Antibody Recognition
pdb|1HIM|L Chain L, Structural Evidence For Induced Fit As A Mechanism For
Antibody-Antigen Recognition
pdb|1HIM|M Chain M, Structural Evidence For Induced Fit As A Mechanism For
Antibody-Antigen Recognition
pdb|1HIN|H Chain H, Structural Evidence For Induced Fit As A Mechanism For
Antibody-Antigen Recognition
Length = 220
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 143 ETSGDMMVPEGGSAKLVCKAKG--YPTPKITWRRE 175
E+ GD++ P GGS KL C A G + + ++W R+
Sbjct: 6 ESGGDLVKP-GGSLKLSCAASGFSFSSYGMSWVRQ 39
>pdb|2ADG|B Chain B, Crystal Structure Of Monoclonal Anti-Cd4 Antibody Q425
pdb|2ADI|B Chain B, Crystal Structure Of Monoclonal Anti-Cd4 Antibody Q425 In
Complex With Barium
pdb|2ADJ|B Chain B, Crystal Structure Of Monoclonal Anti-Cd4 Antibody Q425 In
Complex With Calcium
Length = 222
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 143 ETSGDMMVPEGGSAKLVCKAKG--YPTPKITWRRE 175
E+ GD++ P GGS KL C A G + + ++W R+
Sbjct: 6 ESGGDLVKP-GGSLKLSCAASGFTFSSYGMSWVRQ 39
>pdb|2H1P|L Chain L, The Three-Dimensional Structures Of A Polysaccharide
Binding Antibody To Cryptococcus Neoformans And Its
Complex With A Peptide From A Phage Display Library:
Implications For The Identification Of Peptide Mimotopes
Length = 219
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 16/132 (12%)
Query: 100 WTLNIRSVRREDRGYYMCQVNTN-PMT----KQMAFLEVVIPPDISSEETSGDMMVPEGG 154
+TL I V ED+G Y C +T+ P T ++ P +S S + + G
Sbjct: 76 FTLKISRVEAEDQGVYFCSQSTHVPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLT--SG 133
Query: 155 SAKLVCKAKGYPTPK---ITWR----REDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTR 207
A +VC + PK + W+ N + ++ S +S+ S L+LTK
Sbjct: 134 GASVVCFLNNF-YPKDINVKWKIDGSERQNGVLNSWTDEDSKDSTYSM-SSTLTLTKDEY 191
Query: 208 SEMGAYQCIAAN 219
+Y C A +
Sbjct: 192 ERHNSYTCEATH 203
>pdb|3V6F|A Chain A, Crystal Structure Of An Anti-hbv E-antigen Monoclonal Fab
Fragment (e6), Unbound
pdb|3V6F|C Chain C, Crystal Structure Of An Anti-hbv E-antigen Monoclonal Fab
Fragment (e6), Unbound
pdb|3V6F|E Chain E, Crystal Structure Of An Anti-hbv E-antigen Monoclonal Fab
Fragment (e6), Unbound
pdb|3V6F|H Chain H, Crystal Structure Of An Anti-hbv E-antigen Monoclonal Fab
Fragment (e6), Unbound
pdb|3V6Z|A Chain A, Crystal Structure Of Hepatitis B Virus E-antigen
pdb|3V6Z|C Chain C, Crystal Structure Of Hepatitis B Virus E-antigen
Length = 224
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 143 ETSGDMMVPEGGSAKLVCKAKG--YPTPKITWRRE 175
E+ GD++ P GGS KL C A G + + ++W R+
Sbjct: 6 ESGGDLVKP-GGSLKLSCAASGFTFSSYGMSWVRQ 39
>pdb|1YQV|H Chain H, The Crystal Structure Of The Antibody Fab Hyhel5 Complex
With Lysozyme At 1.7a Resolution
Length = 215
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 20/101 (19%)
Query: 138 DISSEETSGDMMVPEGGSAKLVCKAKGYPTPK--ITWRR-------EDNKEIIVRSNPPS 188
++ +++ ++M P G S K+ CKA GY I W + E EI+ S +
Sbjct: 1 EVQLQQSGAELMKP-GASVKISCKASGYTFSDYWIEWVKQRPGHGLEWIGEILPGSGSTN 59
Query: 189 SQKVF----------SVESEVLSLTKVTRSEMGAYQCIAAN 219
+ F S + + L +T + G Y C+ N
Sbjct: 60 YHERFKGKATFTADTSSSTAYMQLNSLTSEDSGVYYCLHGN 100
>pdb|1SEQ|H Chain H, Fab Mnac13
Length = 225
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 145 SGDMMVPEGGSAKLVCKAKG--YPTPKITWRRE 175
SG +V GGS KL C A G + T ++W R+
Sbjct: 7 SGGGLVQPGGSLKLSCAASGFTFSTYTMSWARQ 39
>pdb|2GKI|A Chain A, Heavy And Light Chain Variable Single Domains Of An
Anti-dna Binding Antibody Hydrolyze Both Double- And
Single-stranded Dnas Without Sequence Specificity
pdb|2GKI|B Chain B, Heavy And Light Chain Variable Single Domains Of An
Anti-dna Binding Antibody Hydrolyze Both Double- And
Single-stranded Dnas Without Sequence Specificity
Length = 291
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 128 MAFLEVVIPPDISSEE----TSGDMMVPEGGSAKLVCKAKGY 165
+A L ++ P + E SG +V G S K+ CKA GY
Sbjct: 8 LALLPLLFTPVTKAREVQLQQSGPELVKPGASVKMSCKASGY 49
>pdb|1H5B|B Chain B, T Cell Receptor Valpha11 (Av11s5) Domain
pdb|1H5B|D Chain D, T Cell Receptor Valpha11 (Av11s5) Domain
Length = 113
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 66 VAWIKADTKAVLAIHEHVITN---NARLSVTHN--DANTWTLNIRSVRREDRGYYMCQVN 120
V W + +++ L ++ + N RL + + TL+IR + ED G Y C
Sbjct: 32 VQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAAE 91
Query: 121 TNPMTKQMAF 130
+ Q+ F
Sbjct: 92 ASSGAWQLIF 101
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 150 VPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSE 209
VP + K C A G P P + W + N + + + KV + + L + V S+
Sbjct: 24 VPAANTVKFRCPAGGNPMPTMRWLK--NGKEFKQEHRIGGYKVRN-QHWSLIMESVVPSD 80
Query: 210 MGAYQCIAAN 219
G Y C+ N
Sbjct: 81 KGNYTCVVEN 90
>pdb|2XKN|B Chain B, Crystal Structure Of The Fab Fragment Of The Anti-Egfr
Antibody 7a7
pdb|2XKN|D Chain D, Crystal Structure Of The Fab Fragment Of The Anti-Egfr
Antibody 7a7
Length = 216
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 145 SGDMMVPEGGSAKLVCKAKGYPTPK--ITWRRE 175
SG ++V GGS KL C A G+ + ++W R+
Sbjct: 7 SGGVLVKPGGSLKLSCAASGFTFSRYAMSWVRQ 39
>pdb|4HFU|H Chain H, Crystal Structure Of Fab 8m2 In Complex With A H2n2
Influenza Virus Hemagglutinin
Length = 226
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 145 SGDMMVPEGGSAKLVCKAKG--YPTPKITWRRE 175
SG M P G S K+ CKA G + + ITW R+
Sbjct: 7 SGADMKPPGSSVKVPCKASGDTFSSYTITWVRQ 39
>pdb|3RKD|L Chain L, Hepatitis E Virus E2s Domain (Genotype I) In Complex With
A Neutralizing Antibody
pdb|3RKD|C Chain C, Hepatitis E Virus E2s Domain (Genotype I) In Complex With
A Neutralizing Antibody
Length = 214
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 16/130 (12%)
Query: 100 WTLNIRSVRREDRGYYMCQ-VNTNPMT----KQMAFLEVVIPPDISSEETSGDMMVPEGG 154
++L I S++ ED G Y CQ NP T ++ P +S S + + G
Sbjct: 71 YSLKINSLQSEDFGSYYCQHFWGNPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLT--SG 128
Query: 155 SAKLVCKAKGYPTPK---ITWR----REDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTR 207
A +VC + PK + W+ N + ++ S +S+ S L+LTK
Sbjct: 129 GASVVCFLNNF-YPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM-SSTLTLTKDEY 186
Query: 208 SEMGAYQCIA 217
+Y C A
Sbjct: 187 ERHNSYTCEA 196
>pdb|1MHP|L Chain L, Crystal Structure Of A Chimeric Alpha1 Integrin I-Domain
In Complex With The Fab Fragment Of A Humanized
Neutralizing Antibody
pdb|1MHP|Y Chain Y, Crystal Structure Of A Chimeric Alpha1 Integrin I-Domain
In Complex With The Fab Fragment Of A Humanized
Neutralizing Antibody
Length = 212
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 19/144 (13%)
Query: 100 WTLNIRSVRREDRGYYMCQV-NTNPMT----KQMAFLEVVIPPDISSEETSGDMMVPEGG 154
+TL I S++ ED Y CQ + NP T ++ V P + S + + + G
Sbjct: 69 YTLTISSLQPEDFATYYCQQWSGNPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQL--KSG 126
Query: 155 SAKLVCKAKG-YP-TPKITWRRE------DNKEIIVRSNPPSSQKVFSVESEVLSLTKVT 206
+A +VC YP K+ W+ + +++E + + S +S+ S L+L+K
Sbjct: 127 TASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQD--SKDSTYSL-SSTLTLSKAD 183
Query: 207 RSEMGAYQC-IAANGVPPTVSKRL 229
+ Y C + G+ V+K
Sbjct: 184 YEKHKVYACEVTHQGLSSPVTKSF 207
>pdb|2FBJ|H Chain H, Refined Crystal Structure Of The Galactan-Binding
Immunoglobulin Fab J539 At 1.95-Angstroms Resolution
Length = 220
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 19/90 (21%)
Query: 145 SGDMMVPEGGSAKLVCKAKGYPTPK--ITWRRE---DNKEIIVRSNP--------PSSQK 191
SG +V GGS KL C A G+ K ++W R+ E I +P PS +
Sbjct: 7 SGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKD 66
Query: 192 VFSVE------SEVLSLTKVTRSEMGAYQC 215
F + S L ++KV + Y C
Sbjct: 67 KFIISRDNAKNSLYLQMSKVRSEDTALYYC 96
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 150 VPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSE 209
VP + K C A G P P + W + N + + + KV + + L + V S+
Sbjct: 25 VPAANTVKFRCPAGGNPMPTMRWLK--NGKEFKQEHRIGGYKVRN-QHWSLIMESVVPSD 81
Query: 210 MGAYQCIAAN 219
G Y C+ N
Sbjct: 82 KGNYTCVVEN 91
>pdb|3O41|L Chain L, Crystal Structure Of 101f Fab Bound To 15-Mer Peptide
Epitope
pdb|3O41|B Chain B, Crystal Structure Of 101f Fab Bound To 15-Mer Peptide
Epitope
pdb|3O45|L Chain L, Crystal Structure Of 101f Fab Bound To 17-Mer Peptide
Epitope
pdb|3O45|B Chain B, Crystal Structure Of 101f Fab Bound To 17-Mer Peptide
Epitope
Length = 218
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 16/130 (12%)
Query: 100 WTLNIRSVRREDRGYYMC-QVNTNPMT----KQMAFLEVVIPPDISSEETSGDMMVPEGG 154
+TLNI V ED Y C Q+ +P T ++ P +S S + + G
Sbjct: 75 FTLNIHPVEEEDAATYYCQQIIEDPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLT--SG 132
Query: 155 SAKLVCKAKGYPTPK---ITWR----REDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTR 207
A +VC + PK + W+ N + ++ S +S+ S L+LTK
Sbjct: 133 GASVVCFLNNF-YPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM-SSTLTLTKDEY 190
Query: 208 SEMGAYQCIA 217
+Y C A
Sbjct: 191 ERHNSYTCEA 200
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 150 VPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSE 209
VP + K C A G P P + W + N + + + KV + + L + V S+
Sbjct: 20 VPAANTVKFRCPAGGNPMPTMRWLK--NGKEFKQEHRIGGYKVRN-QHWSLIMESVVPSD 76
Query: 210 MGAYQCIAAN 219
G Y C+ N
Sbjct: 77 KGNYTCVVEN 86
>pdb|4H20|H Chain H, Crystal Structure And Computational Modeling Of The Fab
Fragment From The Protective Anti-ricin Monoclonal
Antibody Rac18
Length = 220
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 143 ETSGDMMVPEGGSAKLVCKAKGY 165
+ SG ++V G S K+ CKA GY
Sbjct: 5 QQSGPVLVKPGASVKMSCKASGY 27
>pdb|3EOT|L Chain L, Crystal Structure Of Lac031, An Engineered Anti-Vla1 Fab
Length = 215
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 30/137 (21%)
Query: 100 WTLNIRSVRREDRGYYMC-QVNTNPMT-KQMAFLEV----------VIPPDISSEETSGD 147
+TL I S++ ED Y C Q++ NP T Q +E+ + PP SSE+ +
Sbjct: 72 YTLTISSLQPEDFATYYCQQISGNPWTFGQGTKVEIKRADAAPTVSIFPP--SSEQLT-- 127
Query: 148 MMVPEGGSAKLVCKAKGYPTPK---ITWR----REDNKEIIVRSNPPSSQKVFSVESEVL 200
G A +VC + PK + W+ N + ++ S +S+ S L
Sbjct: 128 -----SGGASVVCFLNNF-YPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM-SSTL 180
Query: 201 SLTKVTRSEMGAYQCIA 217
+LTK +Y C A
Sbjct: 181 TLTKDEYERHNSYTCEA 197
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 143 ETSGDMMVPEGGSAKLVCKAKGYPTPKITWRRE 175
E G + P GG+ L C+ P+P+I W ++
Sbjct: 9 EPEGGAVAP-GGTVTLTCEVPAQPSPQIHWMKD 40
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From Human
Advanced Glycosylation End Product-Specific Receptor
Length = 96
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 143 ETSGDMMVPEGGSAKLVCKAKGYPTPKITWRRE 175
E G + P GG+ L C+ P+P+I W ++
Sbjct: 16 EPEGGAVAP-GGTVTLTCEVPAQPSPQIHWMKD 47
>pdb|2OJZ|H Chain H, Anti-Dna Antibody Ed10
pdb|2OJZ|I Chain I, Anti-Dna Antibody Ed10
pdb|2OK0|H Chain H, Fab Ed10-Dna Complex
Length = 216
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 143 ETSGDMMVPEGGSAKLVCKAKGY 165
E SG +V G S K+ CKA GY
Sbjct: 5 EESGPELVKPGASVKISCKASGY 27
>pdb|2YPV|H Chain H, Crystal Structure Of The Meningococcal Vaccine Antigen
Factor H Binding Protein In Complex With A Bactericidal
Antibody
Length = 218
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 143 ETSGDMMVPEGGSAKLVCKAKGYPTP--KITWRREDNKEII 181
+ SG +V G S K+ CKA GY ++W ++ N + +
Sbjct: 5 QESGPELVKPGASVKISCKASGYSFSDYNMSWVKQSNGKSL 45
>pdb|2C1O|A Chain A, Enaiihis Fab Fragment In The Free Form
pdb|2C1O|L Chain L, Enaiihis Fab Fragment In The Free Form
Length = 254
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 143 ETSGDMMVPEGGSAKLVCKAKGYPTPK--ITWRRE 175
+ SG +V G S KL CKA GY + W RE
Sbjct: 4 QQSGAELVRPGTSVKLSCKASGYSFTNYWMNWLRE 38
>pdb|3QEG|H Chain H, Crystal Structure Of Human N12-I2 Fab, An Adcc And
Neutralizing Anti- Hiv-1 Env Antibody
Length = 239
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 29/112 (25%)
Query: 83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT------NPMTKQMAFLEVV-- 134
IT +A +S + + +RS++ ED Y C ++ P T + ++
Sbjct: 69 AITTDAEMSTAY-------MELRSLKSEDSAVYYCASDSRDFSYYEPGTSYSHYYNIMDV 121
Query: 135 ----IPPDISSEETSGDMMVP--------EGGSAKLVCKAKGY-PTP-KITW 172
+SS T G + P GG+A L C K Y P P ++W
Sbjct: 122 WGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW 173
>pdb|1YPZ|E Chain E, Immune Receptor
pdb|1YPZ|G Chain G, Immune Receptor
Length = 207
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 66 VAWIKADTKAVLAIHEHVITN---NARL--SVTHNDANTWTLNIRSVRREDRGYYMCQVN 120
V W + +++ L ++ + N RL + + TL+IR + ED G Y C +
Sbjct: 32 VQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAAD 91
Query: 121 T 121
T
Sbjct: 92 T 92
>pdb|3HNS|L Chain L, Cs-35 Fab Complex With Oligoarabinofuranosyl
Hexasaccharide
pdb|3HNT|L Chain L, Cs-35 Fab Complex With A Linear, Terminal
Oligoarabinofuranosyl Tetrasaccharide From
Lipoarabinomannan
pdb|3HNV|L Chain L, Cs-35 Fab Complex With Oligoarabinofuranosyl
Tetrasaccharide (Branch Part Of Hexasaccharide)
Length = 214
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 53/137 (38%), Gaps = 26/137 (18%)
Query: 100 WTLNIRSVRREDRGYYMCQVNTNP-----------MTKQMAFLEVVIPPDISSEETSGDM 148
++L I ++ +ED G Y C +T P + + A V I P S + TS
Sbjct: 71 FSLTISNLEQEDIGTYFCHQDTKPPYTFGSGTKLEIKRADAAPTVSIFPPSSEQLTS--- 127
Query: 149 MVPEGGSAKLVCKAKG-YPTP-----KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSL 202
G A +VC YP KI N + ++ S +S+ S L+L
Sbjct: 128 -----GGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM-SSTLTL 181
Query: 203 TKVTRSEMGAYQCIAAN 219
TK +Y C A +
Sbjct: 182 TKDEYERHNSYTCEATH 198
>pdb|1MRC|H Chain H, Preparation, Characterization And Crystallization Of An
Antibody Fab Fragment That Recognizes Rna. Crystal
Structures Of Native Fab And Three Fab-Mononucleotide
Complexes
pdb|1MRD|H Chain H, Preparation, Characterization And Crystallization Of An
Antibody Fab Fragment That Recognizes Rna. Crystal
Structures Of Native Fab And Three Fab-Mononucleotide
Complexes
pdb|1MRE|H Chain H, Preparation, Characterization And Crystallization Of An
Antibody Fab Fragment That Recognizes Rna. Crystal
Structures Of Native Fab And Three Fab-Mononucleotide
Complexes
pdb|1MRF|H Chain H, Preparation, Characterization And Crystallization Of An
Antibody Fab Fragment That Recognizes Rna. Crystal
Structures Of Native Fab And Three Fab-Mononucleotide
Complexes
Length = 215
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 143 ETSGDMMVPEGGSAKLVCKAKGY 165
+ SG +V G S KL CKA GY
Sbjct: 5 QQSGAELVKPGASVKLSCKASGY 27
>pdb|1V7M|H Chain H, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|1V7M|I Chain I, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|1V7N|H Chain H, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|1V7N|I Chain I, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|1V7N|J Chain J, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|1V7N|K Chain K, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|2ZKH|H Chain H, Human Thrombopoietin Neutralizing Antibody Tn1 Fab
Length = 217
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 143 ETSGDMMVPEGGSAKLVCKAKGY 165
E SG +V GGS KL C A G+
Sbjct: 5 EESGGGLVQPGGSMKLSCAASGF 27
>pdb|4F9L|D Chain D, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 20.1 Single Chain Antibody
pdb|4F9L|C Chain C, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 20.1 Single Chain Antibody
Length = 259
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 143 ETSGDMMVPEGGSAKLVCKAKGY 165
+ SG +V G S KL CKA GY
Sbjct: 136 QESGAELVKPGASVKLSCKASGY 158
>pdb|3P0G|B Chain B, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 126
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 76 VLAIHEHVITNNA-----RLSVTH-NDANTWTLNIRSVRREDRGYYMCQV 119
V AIH TN A R +++ N ANT L + S++ ED Y C V
Sbjct: 48 VAAIHSGGSTNYANSVKGRFTISRDNAANTVYLQMNSLKPEDTAVYYCNV 97
>pdb|1YEE|H Chain H, Structure Of A Catalytic Antibody, Igg2a Fab Fragment
(D2.5)
Length = 222
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 143 ETSGDMMVPEGGSAKLVCKAKGY--PTPKITW---RREDNKEIIVRSNPPSSQKVFSVES 197
+ SG +V G S KL CK GY + I W R E I R P + ++V+
Sbjct: 5 QESGAELVRPGASVKLSCKTSGYIFTSYWIHWVKQRAAAGLEWIARIYPGTGSSYYNVKF 64
Query: 198 EVLSLTKVTRSEMGAYQCIAA 218
+ + +S AY +++
Sbjct: 65 KGKATLTADKSSSTAYMQLSS 85
>pdb|1S78|D Chain D, Insights Into Erbb Signaling From The Structure Of The
Erbb2- Pertuzumab Complex
pdb|1S78|F Chain F, Insights Into Erbb Signaling From The Structure Of The
Erbb2- Pertuzumab Complex
Length = 226
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 145 SGDMMVPEGGSAKLVCKAKGYPTPKIT--WRRE---DNKEIIVRSNPPSSQKVFSVESEV 199
SG +V GGS +L C A G+ T W R+ E + NP S +++ +
Sbjct: 7 SGGGLVQPGGSLRLSCAASGFTFTDYTMDWVRQAPGKGLEWVADVNPNSGGSIYNQRFKG 66
Query: 200 LSLTKVTRSEMGAY 213
V RS+ Y
Sbjct: 67 RFTLSVDRSKNTLY 80
>pdb|1MAM|L Chain L, Crystal Structure To 2.45 A Resolution Of A Monoclonal Fab
Specific For The Brucella A Cell Wall Polysaccharide
Antigen
Length = 214
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 14/129 (10%)
Query: 100 WTLNIRSVRREDRGYYMCQV-NTNPMT----KQMAFLEVVIPPDISSEETSGDMMVPEGG 154
++L I ++ +ED Y+CQ NT P T ++ P +S S + + G
Sbjct: 71 YSLTISNLNQEDMATYICQQGNTLPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLT--SG 128
Query: 155 SAKLVCKAKG-YPTP-----KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS 208
A +VC YP KI N + ++ S +S+ S L+LTK
Sbjct: 129 GASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM-SSTLTLTKDEYE 187
Query: 209 EMGAYQCIA 217
+Y C A
Sbjct: 188 RHNSYTCEA 196
>pdb|1NQB|A Chain A, Trivalent Antibody Fragment
pdb|1NQB|C Chain C, Trivalent Antibody Fragment
Length = 256
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 143 ETSGDMMVPEGGSAKLVCKAKGY 165
+ SG +V G S KL CKA GY
Sbjct: 5 QQSGAELVKPGASVKLSCKASGY 27
>pdb|2PND|A Chain A, Structure Or Murine Crig
Length = 119
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQV 119
RL V+H +L I +++ +DR +Y C+V
Sbjct: 66 GRLKVSHKVPGDVSLQINTLQMDDRNHYTCEV 97
>pdb|2IFF|H Chain H, Structure Of An Antibody-Lysozyme Complex: Effect Of A
Conservative Mutation
pdb|1BQL|H Chain H, Structure Of An Anti-Hel Fab Fragment Complexed With
Bobwhite Quail Lysozyme
Length = 215
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 20/97 (20%)
Query: 142 EETSGDMMVPEGGSAKLVCKAKGYPTPK--ITWRR-------EDNKEIIVRSNPPSSQKV 192
+++ ++M P G S K+ CKA GY I W + E EI+ S + +
Sbjct: 5 QQSGAELMKP-GASVKISCKASGYTFSDYWIEWVKQRPGHGLEWIGEILPGSGSTNYHER 63
Query: 193 F----------SVESEVLSLTKVTRSEMGAYQCIAAN 219
F S + + L +T + G Y C+ N
Sbjct: 64 FKGKATFTADTSSSTAYMQLNSLTSEDSGVYYCLHGN 100
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 150 VPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSE 209
V EG SA C+ P +TW + D++E+ K ++ L++ +V +
Sbjct: 388 VGEGQSANFYCRVIASSPPVVTWHK-DDREL---KQSVKYMKRYNGNDYGLTINRVKGDD 443
Query: 210 MGAYQCIAAN 219
G Y A N
Sbjct: 444 KGEYTVRAKN 453
>pdb|3ULS|L Chain L, Crystal Structure Of Fab12
pdb|3ULS|A Chain A, Crystal Structure Of Fab12
Length = 213
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 22/107 (20%)
Query: 17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAV 76
+V++A G+ A +C +N+G + V + V I D++
Sbjct: 9 SVSVAPGQTARISCSGDNIGSYYVH--------------WYQQKPGQAPVLVIYEDSERP 54
Query: 77 LAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
I E R S + N NT TL I + ED Y C +P
Sbjct: 55 SGIPE-------RFSGS-NSGNTATLTISGTQAEDEADYYCSSYDDP 93
>pdb|3ULU|C Chain C, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|C Chain C, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 213
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 22/107 (20%)
Query: 17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAV 76
+V++A G+ A +C +N+G + V + V I D++
Sbjct: 9 SVSVAPGQTARISCSGDNIGSYYVH--------------WYQQKPGQAPVLVIYEDSERP 54
Query: 77 LAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
I E R S + N NT TL I + ED Y C +P
Sbjct: 55 SGIPE-------RFSGS-NSGNTATLTISGTQAEDEADYYCSSYDDP 93
>pdb|1JHL|H Chain H, Three-Dimensional Structure Of A Heteroclitic Antigen-
Antibody Cross-Reaction Complex
Length = 116
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 143 ETSGDMMVPEGGSAKLVCKAKGY 165
+ SG +V G S KL CKA GY
Sbjct: 5 QQSGAELVRPGASVKLSCKASGY 27
>pdb|1L7I|H Chain H, Crystal Structure Of The Anti-Erbb2 Fab2c4
Length = 222
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 145 SGDMMVPEGGSAKLVCKAKGYPTPKIT--WRRE---DNKEIIVRSNPPSSQKVFSVESEV 199
SG +V GGS +L C A G+ T W R+ E + NP S +++ +
Sbjct: 7 SGGGLVQPGGSLRLSCAASGFTFTDYTMDWVRQAPGKGLEWVADVNPNSGGSIYNQRFKG 66
Query: 200 LSLTKVTRSEMGAY 213
V RS+ Y
Sbjct: 67 RFTLSVDRSKNTLY 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,122,548
Number of Sequences: 62578
Number of extensions: 274468
Number of successful extensions: 2165
Number of sequences better than 100.0: 452
Number of HSP's better than 100.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 304
Number of HSP's that attempted gapping in prelim test: 1719
Number of HSP's gapped (non-prelim): 650
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)