Query psy7941
Match_columns 238
No_of_seqs 170 out of 1416
Neff 11.4
Searched_HMMs 46136
Date Fri Aug 16 22:44:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7941.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7941hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 99.9 1.1E-24 2.3E-29 181.1 18.3 187 6-237 329-517 (1051)
2 KOG3513|consensus 99.9 9.4E-24 2E-28 175.5 20.3 184 6-236 238-423 (1051)
3 KOG4194|consensus 99.9 1.2E-22 2.6E-27 158.9 13.0 206 2-237 497-707 (873)
4 PHA02826 IL-1 receptor-like pr 99.9 5.4E-21 1.2E-25 138.3 16.9 190 14-233 28-226 (227)
5 KOG4194|consensus 99.9 4.6E-21 9.9E-26 150.2 16.7 199 18-234 579-796 (873)
6 KOG4221|consensus 99.9 1.4E-20 3E-25 157.0 19.4 184 8-237 140-329 (1381)
7 PHA02785 IL-beta-binding prote 99.9 1.6E-19 3.5E-24 138.5 21.3 187 19-223 88-317 (326)
8 KOG4221|consensus 99.8 7.3E-20 1.6E-24 152.8 13.8 176 10-233 239-415 (1381)
9 PHA02785 IL-beta-binding prote 99.8 1.4E-17 3E-22 127.9 17.1 173 17-234 35-216 (326)
10 KOG4222|consensus 99.8 1.4E-17 3.1E-22 138.6 12.7 193 24-237 103-316 (1281)
11 KOG4222|consensus 99.7 3.4E-16 7.3E-21 130.6 13.1 186 7-233 224-411 (1281)
12 cd05762 Ig8_MLCK Eighth immuno 99.7 8.1E-16 1.7E-20 97.2 9.0 88 145-237 7-94 (98)
13 cd05762 Ig8_MLCK Eighth immuno 99.7 6.2E-15 1.3E-19 93.2 12.2 94 9-138 1-95 (98)
14 cd05851 Ig3_Contactin-1 Third 99.6 2.1E-15 4.5E-20 93.5 9.2 81 145-234 8-88 (88)
15 cd05745 Ig3_Peroxidasin Third 99.6 2.6E-15 5.6E-20 90.1 8.2 74 152-233 1-74 (74)
16 cd04975 Ig4_SCFR_like Fourth i 99.6 5E-15 1.1E-19 93.7 9.2 83 146-234 11-100 (101)
17 cd05851 Ig3_Contactin-1 Third 99.6 1.2E-14 2.6E-19 90.1 10.0 86 8-133 1-87 (88)
18 cd05740 Ig_CEACAM_D4 Fourth im 99.6 7.3E-15 1.6E-19 91.5 9.0 82 145-234 10-91 (91)
19 cd05730 Ig3_NCAM-1_like Third 99.6 9.1E-15 2E-19 92.3 9.5 85 145-235 10-94 (95)
20 cd05894 Ig_C5_MyBP-C C5 immuno 99.6 7.3E-15 1.6E-19 90.6 8.2 82 147-233 4-86 (86)
21 cd05852 Ig5_Contactin-1 Fifth 99.6 5.8E-15 1.2E-19 87.9 7.4 73 153-233 1-73 (73)
22 cd05870 Ig5_NCAM-2 Fifth immun 99.6 3.7E-14 8E-19 89.9 10.9 86 146-233 9-98 (98)
23 cd05863 Ig2_VEGFR-3 Second imm 99.6 8.2E-15 1.8E-19 85.2 7.1 66 156-234 1-66 (67)
24 cd05854 Ig6_Contactin-2 Sixth 99.6 1.8E-14 3.9E-19 88.6 9.0 82 154-237 1-85 (85)
25 cd05866 Ig1_NCAM-2 First immun 99.6 3.1E-14 6.6E-19 88.5 9.9 81 146-233 8-91 (92)
26 cd05735 Ig8_DSCAM Eight immuno 99.6 2.1E-14 4.6E-19 89.0 9.0 80 153-237 1-85 (88)
27 cd05737 Ig_Myomesin_like_C C-t 99.6 2.8E-14 6E-19 89.4 9.5 83 145-233 8-92 (92)
28 cd05865 Ig1_NCAM-1 First immun 99.6 4E-14 8.6E-19 88.9 10.1 83 146-233 8-95 (96)
29 cd05882 Ig1_Necl-1 First (N-te 99.6 1.1E-13 2.5E-18 86.5 12.1 91 15-132 4-94 (95)
30 cd05728 Ig4_Contactin-2-like F 99.6 2.6E-14 5.6E-19 88.1 9.0 80 145-233 6-85 (85)
31 cd05867 Ig4_L1-CAM_like Fourth 99.6 2.1E-14 4.5E-19 86.6 8.4 75 153-233 1-75 (76)
32 cd05859 Ig4_PDGFR-alpha Fourth 99.6 2.6E-14 5.7E-19 90.6 8.8 86 147-234 12-100 (101)
33 cd05881 Ig1_Necl-2 First (N-te 99.6 1.1E-13 2.3E-18 86.1 11.3 91 15-132 4-94 (95)
34 cd04968 Ig3_Contactin_like Thi 99.6 4.4E-14 9.5E-19 87.8 9.5 81 145-234 8-88 (88)
35 cd05734 Ig7_DSCAM Seventh immu 99.6 2.2E-14 4.8E-19 87.2 8.0 78 156-233 1-79 (79)
36 cd05892 Ig_Myotilin_C C-termin 99.6 2.2E-14 4.7E-19 85.8 7.4 72 156-233 1-75 (75)
37 cd05724 Ig2_Robo Second immuno 99.6 5.4E-14 1.2E-18 87.1 9.5 82 146-233 4-86 (86)
38 cd05771 IgC_Tapasin_R Tapasin- 99.6 2E-13 4.3E-18 92.4 13.0 120 101-222 2-132 (139)
39 cd05726 Ig4_Robo Fhird immunog 99.6 7.6E-14 1.7E-18 87.1 10.1 83 153-236 1-84 (90)
40 cd05893 Ig_Palladin_C C-termin 99.6 1.8E-14 3.9E-19 86.2 6.9 71 156-233 1-75 (75)
41 cd05869 Ig5_NCAM-1 Fifth immun 99.6 6.5E-14 1.4E-18 88.6 9.7 83 148-233 12-97 (97)
42 cd05876 Ig3_L1-CAM Third immun 99.6 2E-14 4.4E-19 85.4 6.9 71 156-234 1-71 (71)
43 PF07679 I-set: Immunoglobulin 99.6 1.4E-13 3E-18 86.0 11.1 78 9-122 1-78 (90)
44 cd05723 Ig4_Neogenin Fourth im 99.6 3.5E-14 7.5E-19 84.4 7.9 71 155-233 1-71 (71)
45 cd05868 Ig4_NrCAM Fourth immun 99.6 4.1E-14 9E-19 85.2 8.2 75 153-233 1-75 (76)
46 cd04970 Ig6_Contactin_like Six 99.6 2.5E-14 5.4E-19 88.3 7.5 82 154-237 1-85 (85)
47 cd05764 Ig_2 Subgroup of the i 99.5 8E-14 1.7E-18 83.7 8.9 74 153-233 1-74 (74)
48 cd07701 Ig1_Necl-3 First (N-te 99.5 2.4E-13 5.2E-18 85.3 11.4 92 15-133 4-95 (95)
49 cd05738 Ig2_RPTP_IIa_LAR_like 99.5 4.2E-14 9E-19 84.8 7.3 74 156-234 1-74 (74)
50 cd04978 Ig4_L1-NrCAM_like Four 99.5 5.4E-14 1.2E-18 84.9 7.8 75 153-233 1-75 (76)
51 cd05773 Ig8_hNephrin_like Eigh 99.5 5.3E-14 1.1E-18 90.7 8.1 83 152-237 22-108 (109)
52 cd04969 Ig5_Contactin_like Fif 99.5 7E-14 1.5E-18 83.6 7.8 73 153-233 1-73 (73)
53 cd04972 Ig_TrkABC_d4 Fourth do 99.5 1.1E-13 2.5E-18 86.3 9.1 82 147-233 9-90 (90)
54 cd05737 Ig_Myomesin_like_C C-t 99.5 2.9E-13 6.2E-18 84.8 10.9 74 15-123 8-81 (92)
55 cd05747 Ig5_Titin_like M5, fif 99.5 3.2E-13 6.8E-18 84.6 11.0 82 7-124 2-83 (92)
56 cd05763 Ig_1 Subgroup of the i 99.5 8.1E-14 1.8E-18 83.8 7.9 74 156-233 1-74 (75)
57 cd05853 Ig6_Contactin-4 Sixth 99.5 6.2E-14 1.4E-18 85.4 7.3 79 154-237 1-85 (85)
58 cd05732 Ig5_NCAM-1_like Fifth 99.5 1.7E-13 3.7E-18 86.7 9.1 84 147-233 10-96 (96)
59 cd07693 Ig1_Robo First immunog 99.5 3.5E-13 7.5E-18 86.0 10.4 87 145-233 8-99 (100)
60 cd04974 Ig3_FGFR Third immunog 99.5 2.1E-13 4.6E-18 85.0 9.1 81 153-234 1-90 (90)
61 cd05722 Ig1_Neogenin First imm 99.5 2.6E-13 5.5E-18 85.6 9.5 84 145-233 6-95 (95)
62 cd04976 Ig2_VEGFR Second immun 99.5 9.8E-14 2.1E-18 82.3 7.2 70 156-234 1-70 (71)
63 cd05870 Ig5_NCAM-2 Fifth immun 99.5 4.5E-13 9.8E-18 84.9 10.7 95 8-132 2-97 (98)
64 cd05857 Ig2_FGFR Second immuno 99.5 1.7E-13 3.8E-18 84.6 8.5 82 148-233 4-85 (85)
65 cd05865 Ig1_NCAM-1 First immun 99.5 7.4E-13 1.6E-17 83.1 11.4 86 13-131 5-91 (96)
66 cd05892 Ig_Myotilin_C C-termin 99.5 2.9E-13 6.3E-18 80.9 9.0 66 59-132 8-74 (75)
67 cd04977 Ig1_NCAM-1_like First 99.5 2.1E-13 4.6E-18 85.3 8.5 82 146-233 8-92 (92)
68 cd04968 Ig3_Contactin_like Thi 99.5 5E-13 1.1E-17 83.0 10.1 86 8-133 1-87 (88)
69 cd05848 Ig1_Contactin-5 First 99.5 2.1E-13 4.6E-18 85.6 8.4 74 152-231 18-92 (94)
70 cd05748 Ig_Titin_like Immunogl 99.5 1.4E-13 3E-18 82.6 7.2 74 155-233 1-74 (74)
71 cd05725 Ig3_Robo Third immunog 99.5 1.2E-13 2.7E-18 81.6 6.9 69 156-233 1-69 (69)
72 cd05744 Ig_Myotilin_C_like Imm 99.5 1.8E-13 3.8E-18 82.2 7.6 72 156-233 1-75 (75)
73 cd05850 Ig1_Contactin-2 First 99.5 4.1E-13 8.9E-18 84.3 9.6 73 153-231 19-92 (94)
74 cd05747 Ig5_Titin_like M5, fif 99.5 2.7E-13 5.8E-18 84.9 8.6 82 145-231 10-91 (92)
75 cd05760 Ig2_PTK7 Second immuno 99.5 2.7E-13 5.8E-18 81.9 8.2 74 156-234 1-75 (77)
76 cd05891 Ig_M-protein_C C-termi 99.5 3.6E-13 7.9E-18 84.2 9.0 83 145-233 8-92 (92)
77 cd05765 Ig_3 Subgroup of the i 99.5 3E-13 6.4E-18 82.8 8.4 79 153-233 1-81 (81)
78 cd05864 Ig2_VEGFR-2 Second imm 99.5 1.8E-13 3.9E-18 80.6 7.0 67 156-232 1-67 (70)
79 cd05856 Ig2_FGFRL1-like Second 99.5 1.9E-13 4E-18 83.9 7.4 79 148-233 4-82 (82)
80 PHA03376 BARF1; Provisional 99.5 5.1E-12 1.1E-16 85.8 14.5 138 15-178 18-164 (221)
81 PF07679 I-set: Immunoglobulin 99.5 2.7E-13 5.9E-18 84.7 8.1 84 145-233 7-90 (90)
82 cd05731 Ig3_L1-CAM_like Third 99.5 1.1E-13 2.4E-18 82.4 6.0 70 156-233 1-70 (71)
83 cd05728 Ig4_Contactin-2-like F 99.5 5.1E-13 1.1E-17 82.3 8.8 74 11-124 2-75 (85)
84 cd05858 Ig3_FGFR-2 Third immun 99.5 4.3E-13 9.3E-18 83.6 8.5 80 153-233 1-89 (90)
85 cd05749 Ig2_Tyro3_like Second 99.5 4.3E-13 9.3E-18 81.3 8.1 75 145-231 5-80 (81)
86 cd05855 Ig_TrkB_d5 Fifth domai 99.5 1.9E-13 4.2E-18 82.0 6.5 74 157-232 2-77 (79)
87 cd05849 Ig1_Contactin-1 First 99.5 6.2E-13 1.3E-17 83.1 9.0 73 153-232 19-92 (93)
88 cd05746 Ig4_Peroxidasin Fourth 99.5 1.6E-13 3.4E-18 81.1 5.9 68 156-231 1-68 (69)
89 cd04975 Ig4_SCFR_like Fourth i 99.5 1.5E-12 3.2E-17 82.5 10.6 90 15-134 10-100 (101)
90 cd05869 Ig5_NCAM-1 Fifth immun 99.5 1.7E-12 3.7E-17 82.1 10.5 94 8-132 2-96 (97)
91 cd05852 Ig5_Contactin-1 Fifth 99.5 7.6E-13 1.7E-17 78.8 8.2 71 23-132 1-72 (73)
92 cd05733 Ig6_L1-CAM_like Sixth 99.4 4.4E-13 9.6E-18 80.9 7.1 72 156-231 1-76 (77)
93 cd05893 Ig_Palladin_C C-termin 99.4 1.1E-12 2.3E-17 78.5 8.6 66 59-132 8-74 (75)
94 cd04973 Ig1_FGFR First immunog 99.4 1E-12 2.2E-17 79.7 8.6 76 147-232 3-78 (79)
95 cd05739 Ig3_RPTP_IIa_LAR_like 99.4 7.4E-13 1.6E-17 78.0 7.7 68 153-231 1-68 (69)
96 cd05730 Ig3_NCAM-1_like Third 99.4 2.1E-12 4.5E-17 81.5 10.3 89 9-134 2-93 (95)
97 cd05891 Ig_M-protein_C C-termi 99.4 2.3E-12 4.9E-17 80.6 10.2 84 14-133 7-90 (92)
98 cd07702 Ig2_VEGFR-1 Second imm 99.4 3.1E-13 6.7E-18 79.7 5.9 69 156-231 1-70 (72)
99 cd05894 Ig_C5_MyBP-C C5 immuno 99.4 2.2E-12 4.7E-17 79.5 10.0 74 16-124 3-76 (86)
100 cd04972 Ig_TrkABC_d4 Fourth do 99.4 2.9E-12 6.2E-17 79.9 10.7 85 12-132 4-89 (90)
101 cd05853 Ig6_Contactin-4 Sixth 99.4 2E-12 4.4E-17 78.7 9.5 84 24-137 1-85 (85)
102 cd05732 Ig5_NCAM-1_like Fifth 99.4 2.4E-12 5.2E-17 81.4 10.4 93 8-132 2-95 (96)
103 cd04971 Ig_TrKABC_d5 Fifth dom 99.4 4.8E-13 1E-17 81.2 6.6 72 157-232 2-79 (81)
104 cd05717 Ig1_Necl-1-3_like Firs 99.4 4.6E-12 1E-16 79.9 11.0 91 15-132 4-94 (95)
105 cd05735 Ig8_DSCAM Eight immuno 99.4 2.4E-12 5.2E-17 79.7 9.5 82 23-138 1-86 (88)
106 cd05756 Ig1_IL1R_like First im 99.4 9E-13 1.9E-17 82.5 7.4 81 148-233 9-94 (94)
107 cd04977 Ig1_NCAM-1_like First 99.4 7E-12 1.5E-16 78.4 11.2 77 12-123 4-80 (92)
108 cd05875 Ig6_hNeurofascin_like 99.4 1.4E-12 3E-17 78.6 7.6 72 156-231 1-76 (77)
109 cd05745 Ig3_Peroxidasin Third 99.4 1.4E-12 3E-17 78.2 7.5 72 22-132 1-73 (74)
110 cd05866 Ig1_NCAM-2 First immun 99.4 4.1E-12 8.9E-17 79.0 9.8 78 12-125 4-81 (92)
111 cd05736 Ig2_Follistatin_like S 99.4 1.9E-12 4.2E-17 78.0 8.0 75 156-235 1-75 (76)
112 cd05874 Ig6_NrCAM Sixth immuno 99.4 1.4E-12 3E-17 78.6 7.3 72 156-231 1-76 (77)
113 cd07693 Ig1_Robo First immunog 99.4 7.2E-12 1.6E-16 79.8 10.9 95 8-133 1-99 (100)
114 cd05854 Ig6_Contactin-2 Sixth 99.4 9.5E-12 2.1E-16 76.5 10.7 67 65-137 18-85 (85)
115 cd05744 Ig_Myotilin_C_like Imm 99.4 5.9E-12 1.3E-16 75.5 9.4 65 60-132 9-74 (75)
116 cd05743 Ig_Perlecan_D2_like Im 99.4 1.2E-12 2.6E-17 79.3 6.2 68 153-224 1-68 (78)
117 cd05724 Ig2_Robo Second immuno 99.4 8.2E-12 1.8E-16 77.3 9.9 74 14-124 2-75 (86)
118 cd05848 Ig1_Contactin-5 First 99.4 7.5E-12 1.6E-16 78.5 9.3 78 9-124 2-83 (94)
119 cd05867 Ig4_L1-CAM_like Fourth 99.4 5.2E-12 1.1E-16 76.1 8.2 74 23-133 1-75 (76)
120 cd05750 Ig_Pro_neuregulin Immu 99.4 2E-12 4.4E-17 77.8 6.3 72 156-229 1-73 (75)
121 cd05740 Ig_CEACAM_D4 Fourth im 99.4 1.7E-11 3.6E-16 76.3 10.6 77 9-125 2-80 (91)
122 cd05861 Ig1_PDGFR-alphabeta Fr 99.4 3.4E-12 7.3E-17 78.3 7.2 79 153-234 1-83 (84)
123 cd05859 Ig4_PDGFR-alpha Fourth 99.4 1.3E-11 2.9E-16 78.2 9.8 88 17-134 12-100 (101)
124 cd05882 Ig1_Necl-1 First (N-te 99.4 1.2E-11 2.6E-16 77.4 9.3 85 146-232 5-94 (95)
125 cd05758 Ig5_KIRREL3-like Fifth 99.4 1.4E-11 3.1E-16 78.0 9.7 80 146-231 9-97 (98)
126 cd05857 Ig2_FGFR Second immuno 99.4 1.3E-11 2.9E-16 76.1 9.4 81 17-132 3-84 (85)
127 cd05868 Ig4_NrCAM Fourth immun 99.3 7.8E-12 1.7E-16 75.2 7.9 74 23-133 1-75 (76)
128 cd05849 Ig1_Contactin-1 First 99.3 1.5E-11 3.3E-16 76.8 9.5 78 8-124 1-82 (93)
129 cd05726 Ig4_Robo Fhird immunog 99.3 1.4E-11 3E-16 76.8 9.1 82 23-135 1-83 (90)
130 cd05742 Ig1_VEGFR_like First i 99.3 5.8E-12 1.2E-16 77.5 7.1 80 153-233 1-83 (84)
131 cd04973 Ig1_FGFR First immunog 99.3 2.1E-11 4.6E-16 73.9 9.3 67 15-122 1-67 (79)
132 cd04967 Ig1_Contactin First Ig 99.3 1.1E-11 2.3E-16 77.5 8.2 71 152-228 18-89 (91)
133 cd05850 Ig1_Contactin-2 First 99.3 2.8E-11 6E-16 76.0 10.0 79 9-125 2-84 (94)
134 cd05752 Ig1_FcgammaR_like Frst 99.3 1.1E-11 2.3E-16 74.7 7.5 77 9-132 1-77 (78)
135 cd04970 Ig6_Contactin_like Six 99.3 4E-11 8.7E-16 73.9 10.2 67 65-137 18-85 (85)
136 cd05863 Ig2_VEGFR-3 Second imm 99.3 1.1E-11 2.3E-16 72.1 7.1 57 60-134 9-66 (67)
137 cd04979 Ig_Semaphorin_C Immuno 99.3 1.7E-11 3.6E-16 76.3 8.5 84 146-234 4-87 (89)
138 cd04969 Ig5_Contactin_like Fif 99.3 1.7E-11 3.6E-16 73.3 8.2 62 23-123 1-62 (73)
139 cd05773 Ig8_hNephrin_like Eigh 99.3 4.4E-11 9.5E-16 77.1 10.6 96 8-137 4-108 (109)
140 cd05723 Ig4_Neogenin Fourth im 99.3 2.2E-11 4.7E-16 72.3 8.2 59 60-131 10-69 (71)
141 cd05743 Ig_Perlecan_D2_like Im 99.3 3.3E-11 7.2E-16 72.9 8.8 65 23-123 1-65 (78)
142 cd04974 Ig3_FGFR Third immunog 99.3 1.4E-11 3E-16 76.7 7.2 33 101-133 56-89 (90)
143 cd05752 Ig1_FcgammaR_like Frst 99.3 3.4E-11 7.3E-16 72.5 8.5 70 146-233 8-78 (78)
144 cd05858 Ig3_FGFR-2 Third immun 99.3 3.5E-11 7.5E-16 75.0 8.8 34 100-133 55-89 (90)
145 cd04978 Ig4_L1-NrCAM_like Four 99.3 2.7E-11 5.8E-16 73.1 8.1 74 23-133 1-75 (76)
146 cd05722 Ig1_Neogenin First imm 99.3 6.6E-11 1.4E-15 74.5 10.0 78 11-125 2-85 (95)
147 cd05753 Ig2_FcgammaR_like Seco 99.3 1.9E-11 4E-16 74.8 7.1 73 149-233 10-83 (83)
148 cd04979 Ig_Semaphorin_C Immuno 99.3 5E-11 1.1E-15 74.1 9.2 83 14-133 2-84 (89)
149 cd05758 Ig5_KIRREL3-like Fifth 99.3 1.2E-10 2.5E-15 73.8 11.0 83 8-124 2-89 (98)
150 cd07701 Ig1_Necl-3 First (N-te 99.3 6.8E-11 1.5E-15 74.2 9.7 87 145-233 4-95 (95)
151 cd05873 Ig_Sema4D_like Immunog 99.3 5.4E-11 1.2E-15 72.8 8.9 69 14-122 2-70 (87)
152 cd05725 Ig3_Robo Third immunog 99.3 4.9E-11 1.1E-15 70.4 8.3 50 60-123 9-58 (69)
153 cd05748 Ig_Titin_like Immunogl 99.3 1E-10 2.2E-15 70.1 9.6 55 60-124 10-64 (74)
154 cd05764 Ig_2 Subgroup of the i 99.3 7.6E-11 1.6E-15 70.6 8.6 64 23-124 1-64 (74)
155 cd05760 Ig2_PTK7 Second immuno 99.2 5.9E-11 1.3E-15 71.6 7.9 54 60-124 9-62 (77)
156 cd05856 Ig2_FGFRL1-like Second 99.2 4.3E-11 9.3E-16 73.3 7.3 69 18-124 4-72 (82)
157 cd05756 Ig1_IL1R_like First im 99.2 6.4E-11 1.4E-15 74.1 8.1 77 16-123 7-83 (94)
158 cd04976 Ig2_VEGFR Second immun 99.2 6.5E-11 1.4E-15 70.2 7.6 60 60-133 9-69 (71)
159 cd05876 Ig3_L1-CAM Third immun 99.2 6.7E-11 1.5E-15 70.2 7.6 52 60-124 9-60 (71)
160 cd05729 Ig2_FGFR_like Second i 99.2 8.5E-11 1.8E-15 72.5 8.4 82 148-233 4-85 (85)
161 cd05749 Ig2_Tyro3_like Second 99.2 8.2E-11 1.8E-15 71.3 8.0 70 11-124 1-71 (81)
162 cd05895 Ig_Pro_neuregulin-1 Im 99.2 3.2E-11 7E-16 72.6 5.9 71 156-229 1-74 (76)
163 cd05717 Ig1_Necl-1-3_like Firs 99.2 3E-10 6.4E-15 71.6 10.5 87 145-233 4-95 (95)
164 cd05763 Ig_1 Subgroup of the i 99.2 1.2E-10 2.5E-15 70.0 8.1 66 59-133 8-74 (75)
165 cd07690 Ig1_CD4 First immunogl 99.2 1.1E-10 2.4E-15 72.6 8.1 79 18-122 2-87 (94)
166 cd05754 Ig3_Perlecan_like Thir 99.2 8.6E-11 1.9E-15 72.4 7.4 76 145-231 8-84 (85)
167 cd05898 Ig5_KIRREL3 Fifth immu 99.2 1.4E-10 3.1E-15 72.5 8.4 83 145-231 8-97 (98)
168 cd05864 Ig2_VEGFR-2 Second imm 99.2 1E-10 2.2E-15 68.8 7.3 59 60-133 9-68 (70)
169 cd05861 Ig1_PDGFR-alphabeta Fr 99.2 5.3E-10 1.2E-14 68.5 10.7 68 23-122 1-68 (84)
170 cd05746 Ig4_Peroxidasin Fourth 99.2 9.2E-11 2E-15 69.2 6.8 52 60-124 9-60 (69)
171 cd05738 Ig2_RPTP_IIa_LAR_like 99.2 1.6E-10 3.5E-15 69.1 8.0 63 60-133 9-73 (74)
172 cd05757 Ig2_IL1R_like Second i 99.2 1.6E-10 3.4E-15 71.9 7.9 67 148-222 5-76 (92)
173 cd05727 Ig2_Contactin-2-like S 99.2 1.1E-10 2.3E-15 72.5 7.1 72 147-222 12-84 (96)
174 cd05742 Ig1_VEGFR_like First i 99.2 2.7E-10 5.9E-15 70.0 8.9 82 23-133 1-83 (84)
175 cd05765 Ig_3 Subgroup of the i 99.2 2.8E-10 6E-15 69.5 8.3 69 23-123 1-70 (81)
176 cd05739 Ig3_RPTP_IIa_LAR_like 99.2 2.7E-10 5.9E-15 67.0 7.5 60 23-124 1-60 (69)
177 cd05885 Ig2_Necl-4 Second immu 99.2 6E-10 1.3E-14 66.7 9.0 67 156-224 2-69 (80)
178 cd05873 Ig_Sema4D_like Immunog 99.2 2.5E-10 5.4E-15 69.8 7.4 69 145-221 3-71 (87)
179 cd04983 IgV_TCR_alpha_like Imm 99.2 9.9E-10 2.1E-14 71.1 10.7 85 12-122 2-92 (109)
180 cd05753 Ig2_FcgammaR_like Seco 99.2 2.3E-10 5E-15 69.9 7.2 65 16-123 7-71 (83)
181 cd05731 Ig3_L1-CAM_like Third 99.1 2.9E-10 6.3E-15 67.5 7.3 52 60-124 9-60 (71)
182 cd05845 Ig2_L1-CAM_like Second 99.1 3.9E-10 8.6E-15 69.9 8.0 72 145-222 10-83 (95)
183 cd05871 Ig_Semaphorin_classIII 99.1 6.7E-10 1.5E-14 69.0 8.9 84 148-235 6-90 (91)
184 cd05862 Ig1_VEGFR First immuno 99.1 7.6E-10 1.7E-14 68.1 8.9 81 153-234 1-85 (86)
185 cd05855 Ig_TrkB_d5 Fifth domai 99.1 8.2E-10 1.8E-14 66.3 8.6 57 59-124 8-68 (79)
186 cd05899 IgV_TCR_beta Immunoglo 99.1 7.4E-10 1.6E-14 71.7 9.2 83 12-121 2-93 (110)
187 cd05734 Ig7_DSCAM Seventh immu 99.1 7.3E-10 1.6E-14 67.2 8.5 60 60-124 9-68 (79)
188 cd04967 Ig1_Contactin First Ig 99.1 6.1E-10 1.3E-14 69.5 8.4 78 9-124 2-83 (91)
189 cd05754 Ig3_Perlecan_like Thir 99.1 6.7E-10 1.4E-14 68.4 8.3 71 12-123 5-75 (85)
190 cd07702 Ig2_VEGFR-1 Second imm 99.1 6.3E-10 1.4E-14 65.6 7.8 50 60-122 9-58 (72)
191 cd05713 Ig_MOG_like Immunoglob 99.1 2.4E-09 5.2E-14 68.1 10.8 45 88-133 51-97 (100)
192 cd05871 Ig_Semaphorin_classIII 99.1 1.7E-09 3.7E-14 67.2 9.8 84 16-134 4-89 (91)
193 cd05845 Ig2_L1-CAM_like Second 99.1 4.6E-10 1E-14 69.6 7.1 78 9-123 3-82 (95)
194 PF13895 Ig_2: Immunoglobulin 99.1 7.7E-10 1.7E-14 67.2 8.2 72 148-233 9-80 (80)
195 smart00408 IGc2 Immunoglobulin 99.1 8.4E-10 1.8E-14 63.6 7.8 63 152-222 1-63 (63)
196 cd05729 Ig2_FGFR_like Second i 99.1 2.7E-09 5.9E-14 65.6 10.2 72 17-123 3-74 (85)
197 cd04971 Ig_TrKABC_d5 Fifth dom 99.1 2.1E-09 4.6E-14 65.2 9.4 69 59-133 8-78 (81)
198 cd05736 Ig2_Follistatin_like S 99.1 1.8E-09 3.9E-14 65.0 9.0 64 60-133 9-73 (76)
199 cd05727 Ig2_Contactin-2-like S 99.1 9.5E-10 2.1E-14 68.3 7.5 74 14-122 9-82 (96)
200 cd05860 Ig4_SCFR Fourth immuno 99.1 2.8E-09 6E-14 66.3 9.0 87 146-234 11-100 (101)
201 PF00047 ig: Immunoglobulin do 99.1 4.3E-09 9.2E-14 61.0 9.4 64 23-119 1-64 (64)
202 PHA02826 IL-1 receptor-like pr 99.0 4.4E-09 9.5E-14 76.5 11.1 90 19-121 104-209 (227)
203 cd04982 IgV_TCR_gamma Immunogl 99.0 4.4E-09 9.5E-14 68.8 10.0 85 13-121 3-98 (116)
204 cd04980 IgV_L_kappa Immunoglob 99.0 3E-09 6.5E-14 68.4 8.9 85 11-121 3-92 (106)
205 cd05757 Ig2_IL1R_like Second i 99.0 3.4E-09 7.3E-14 65.9 8.6 71 17-122 4-74 (92)
206 cd05775 Ig_SLAM-CD84_like_N N- 99.0 3.1E-09 6.7E-14 67.0 8.4 81 21-129 2-90 (97)
207 cd00099 IgV Immunoglobulin var 99.0 6E-09 1.3E-13 66.9 9.8 81 18-123 1-90 (105)
208 cd05898 Ig5_KIRREL3 Fifth immu 99.0 1.4E-08 3E-13 63.6 11.0 83 9-123 2-88 (98)
209 cd05874 Ig6_NrCAM Sixth immuno 99.0 4.6E-09 9.9E-14 63.2 8.4 57 59-125 8-68 (77)
210 cd05877 Ig_LP_like Immunoglobu 99.0 1.4E-08 3.1E-13 65.3 11.1 81 22-122 1-90 (106)
211 cd05733 Ig6_L1-CAM_like Sixth 99.0 4.3E-09 9.3E-14 63.4 8.0 56 59-124 8-67 (77)
212 cd05875 Ig6_hNeurofascin_like 99.0 6.3E-09 1.4E-13 62.6 8.7 58 59-126 8-69 (77)
213 cd05846 Ig1_MRC-OX-2_like Firs 99.0 1.1E-08 2.3E-13 64.7 10.0 46 88-133 49-96 (97)
214 PF07686 V-set: Immunoglobulin 99.0 1.7E-08 3.7E-13 65.7 11.3 86 12-122 5-101 (114)
215 cd05718 Ig1_PVR_like First imm 99.0 1.2E-08 2.7E-13 64.6 10.3 85 24-131 1-93 (98)
216 cd05897 Ig2_IL1R2_like Second 99.0 2.4E-09 5.2E-14 66.6 6.5 80 149-234 6-94 (95)
217 cd07690 Ig1_CD4 First immunogl 99.0 1.8E-09 4E-14 67.1 6.0 75 148-222 2-89 (94)
218 cd07706 IgV_TCR_delta Immunogl 99.0 7.4E-09 1.6E-13 67.7 9.1 86 11-121 2-93 (116)
219 cd05714 Ig_CSPGs_LP Immunoglob 99.0 2.1E-08 4.6E-13 64.4 11.1 93 22-134 1-103 (106)
220 cd05716 Ig_pIgR Immunoglobulin 99.0 1.2E-08 2.6E-13 64.6 9.8 81 18-123 2-87 (98)
221 cd05880 Ig_EVA1 Immunoglobulin 99.0 2.9E-08 6.3E-13 64.6 11.7 89 13-123 3-102 (115)
222 cd05750 Ig_Pro_neuregulin Immu 99.0 8E-09 1.7E-13 61.9 8.5 57 61-124 11-67 (75)
223 cd05887 Ig1_Nectin-3_like Firs 99.0 2.8E-08 6E-13 62.0 10.9 46 88-133 48-95 (96)
224 cd05774 Ig_CEACAM_D1 First imm 99.0 1.5E-08 3.3E-13 64.4 9.9 89 15-133 5-103 (105)
225 cd05872 Ig_Sema4B_like Immunog 99.0 9.4E-09 2E-13 62.4 8.5 78 15-133 3-80 (85)
226 cd05715 Ig_P0-like Immunoglobu 99.0 1.8E-08 4E-13 65.8 10.5 87 14-122 4-102 (116)
227 cd05741 Ig_CEACAM_D1_like Firs 99.0 7.6E-09 1.6E-13 64.7 8.3 75 23-127 1-84 (92)
228 cd05895 Ig_Pro_neuregulin-1 Im 98.9 1.5E-08 3.3E-13 60.9 9.2 57 61-123 11-67 (76)
229 PF13895 Ig_2: Immunoglobulin 98.9 1.2E-08 2.6E-13 61.9 8.9 77 9-133 2-78 (80)
230 smart00409 IG Immunoglobulin. 98.9 2.9E-08 6.2E-13 60.8 10.7 80 148-233 4-85 (86)
231 smart00410 IG_like Immunoglobu 98.9 2.9E-08 6.2E-13 60.8 10.7 80 148-233 4-85 (86)
232 cd05900 Ig_Aggrecan Immunoglob 98.9 3.1E-08 6.8E-13 63.8 10.9 98 22-133 1-108 (112)
233 cd05879 Ig_P0 Immunoglobulin ( 98.9 4.4E-08 9.5E-13 63.6 11.5 87 14-122 4-102 (116)
234 cd05896 Ig1_IL1RAPL-1_like Fir 98.9 1.2E-08 2.6E-13 63.7 8.3 84 148-233 10-104 (104)
235 cd05883 Ig2_Necl-2 Second immu 98.9 1.7E-08 3.6E-13 60.7 8.5 79 156-236 2-82 (82)
236 cd04984 IgV_L_lambda Immunoglo 98.9 1.2E-08 2.6E-13 64.6 8.4 78 19-121 2-84 (98)
237 cd05896 Ig1_IL1RAPL-1_like Fir 98.9 9.7E-09 2.1E-13 64.1 7.5 84 15-123 7-93 (104)
238 cd05759 Ig2_KIRREL3-like Secon 98.9 1.4E-08 3E-13 62.0 8.2 77 156-233 2-82 (82)
239 cd05878 Ig_Aggrecan_like Immun 98.9 4.9E-08 1.1E-12 63.0 11.1 97 22-134 1-107 (110)
240 PF00047 ig: Immunoglobulin do 98.9 3E-09 6.4E-14 61.7 4.9 59 153-217 1-64 (64)
241 cd05889 Ig1_DNAM-1_like First 98.9 5.6E-08 1.2E-12 60.7 10.9 47 88-134 48-94 (96)
242 cd05862 Ig1_VEGFR First immuno 98.9 2.9E-08 6.3E-13 61.0 9.4 84 23-134 1-85 (86)
243 cd05712 Ig_Siglec_N Immunoglob 98.9 1.8E-08 3.9E-13 66.1 9.0 89 13-121 4-101 (119)
244 cd05885 Ig2_Necl-4 Second immu 98.9 3E-08 6.4E-13 59.4 8.3 58 59-124 10-67 (80)
245 KOG3515|consensus 98.9 7.1E-08 1.5E-12 79.9 13.3 172 8-221 7-186 (741)
246 cd05741 Ig_CEACAM_D1_like Firs 98.9 1.4E-08 3E-13 63.5 7.3 81 153-233 1-92 (92)
247 smart00410 IG_like Immunoglobu 98.9 1.5E-07 3.2E-12 57.5 11.5 72 16-123 2-74 (86)
248 smart00409 IG Immunoglobulin. 98.9 1.5E-07 3.2E-12 57.5 11.5 72 16-123 2-74 (86)
249 cd05720 Ig_CD8_alpha Immunoglo 98.8 3.4E-08 7.3E-13 63.1 8.6 75 19-120 2-89 (104)
250 PHA02987 Ig domain OX-2-like p 98.8 1.2E-07 2.7E-12 65.1 11.2 96 16-136 23-124 (189)
251 cd05888 Ig1_Nectin-4_like Frst 98.8 1.4E-07 2.9E-12 59.9 10.6 46 88-133 51-99 (100)
252 smart00408 IGc2 Immunoglobulin 98.8 4.2E-08 9.1E-13 56.3 7.4 61 22-122 1-61 (63)
253 cd07700 IgV_CD8_beta Immunoglo 98.8 7.9E-08 1.7E-12 61.8 9.1 78 18-120 1-92 (107)
254 cd05881 Ig1_Necl-2 First (N-te 98.8 1.8E-07 3.9E-12 58.3 10.0 74 146-219 5-83 (95)
255 cd04981 IgV_H Immunoglobulin ( 98.8 1.3E-07 2.9E-12 61.7 9.9 84 14-121 3-97 (117)
256 cd05902 Ig_Neurocan Immunoglob 98.8 2.5E-07 5.5E-12 59.3 10.9 48 87-134 57-107 (110)
257 cd05901 Ig_Versican Immunoglob 98.8 6.5E-07 1.4E-11 57.7 12.4 97 23-134 2-114 (117)
258 cd05886 Ig1_Nectin-1_like Firs 98.7 3.4E-07 7.4E-12 57.6 10.4 47 87-133 50-98 (99)
259 cd05774 Ig_CEACAM_D1 First imm 98.7 2.1E-07 4.5E-12 59.2 9.3 84 149-232 9-104 (105)
260 cd05751 Ig1_LILRB1_like First 98.7 1.5E-07 3.3E-12 58.5 8.5 74 8-122 2-75 (91)
261 PF13927 Ig_3: Immunoglobulin 98.7 1.2E-07 2.5E-12 56.6 7.4 75 8-121 1-75 (75)
262 smart00406 IGv Immunoglobulin 98.7 1.8E-07 4E-12 56.8 8.4 33 87-119 48-81 (81)
263 cd05775 Ig_SLAM-CD84_like_N N- 98.7 7E-08 1.5E-12 60.8 6.3 82 152-233 3-96 (97)
264 cd05759 Ig2_KIRREL3-like Secon 98.7 4.7E-07 1E-11 55.2 9.8 57 61-123 12-69 (82)
265 cd05860 Ig4_SCFR Fourth immuno 98.7 8.4E-07 1.8E-11 55.4 10.5 78 16-124 11-89 (101)
266 cd05897 Ig2_IL1R2_like Second 98.7 6.3E-08 1.4E-12 60.2 5.5 72 19-122 6-77 (95)
267 cd05877 Ig_LP_like Immunoglobu 98.7 4.4E-07 9.5E-12 58.3 9.4 82 152-234 1-103 (106)
268 PF13927 Ig_3: Immunoglobulin 98.6 1.4E-07 2.9E-12 56.3 6.5 57 156-219 18-75 (75)
269 cd05900 Ig_Aggrecan Immunoglob 98.6 6.3E-07 1.4E-11 57.8 9.4 82 152-234 1-109 (112)
270 cd05714 Ig_CSPGs_LP Immunoglob 98.6 3.4E-07 7.3E-12 58.8 8.1 83 152-235 1-104 (106)
271 cd05751 Ig1_LILRB1_like First 98.6 2.2E-07 4.7E-12 57.9 7.0 78 148-233 11-90 (91)
272 cd05879 Ig_P0 Immunoglobulin ( 98.6 7.7E-07 1.7E-11 57.8 9.4 87 146-232 6-115 (116)
273 cd05713 Ig_MOG_like Immunoglob 98.6 1E-06 2.2E-11 55.9 9.3 80 153-233 1-99 (100)
274 cd05872 Ig_Sema4B_like Immunog 98.6 4.4E-07 9.5E-12 55.2 7.1 66 147-222 5-70 (85)
275 cd04983 IgV_TCR_alpha_like Imm 98.6 4.5E-07 9.8E-12 58.5 7.5 77 145-221 5-93 (109)
276 cd05883 Ig2_Necl-2 Second immu 98.5 2.5E-06 5.5E-11 51.3 9.8 68 60-134 11-80 (82)
277 cd05761 Ig2_Necl-1-4_like Seco 98.5 6.9E-07 1.5E-11 54.4 7.6 66 156-223 2-70 (82)
278 cd05899 IgV_TCR_beta Immunoglo 98.5 5.9E-07 1.3E-11 58.1 7.2 76 145-221 5-95 (110)
279 cd05878 Ig_Aggrecan_like Immun 98.5 2.3E-06 4.9E-11 55.2 9.5 83 152-235 1-108 (110)
280 cd05761 Ig2_Necl-1-4_like Seco 98.5 3.6E-06 7.8E-11 51.2 9.6 58 61-124 12-69 (82)
281 cd05880 Ig_EVA1 Immunoglobulin 98.5 4.3E-06 9.3E-11 54.4 10.2 88 145-232 5-114 (115)
282 cd07705 Ig2_Necl-1 Second immu 98.5 2.8E-06 6.1E-11 51.8 8.6 76 156-233 2-83 (83)
283 cd05715 Ig_P0-like Immunoglobu 98.5 3.9E-06 8.4E-11 54.8 9.8 89 145-233 5-116 (116)
284 cd00099 IgV Immunoglobulin var 98.4 1.6E-06 3.6E-11 55.5 7.7 74 149-222 2-91 (105)
285 cd05721 IgV_CTLA-4 Immunoglobu 98.4 4.9E-06 1.1E-10 53.0 9.5 83 14-119 4-93 (115)
286 cd05718 Ig1_PVR_like First imm 98.4 3E-06 6.5E-11 53.5 8.1 79 154-233 1-97 (98)
287 PF07686 V-set: Immunoglobulin 98.4 1.9E-06 4.1E-11 55.9 7.4 89 145-233 8-114 (114)
288 cd04980 IgV_L_kappa Immunoglob 98.4 1.6E-06 3.5E-11 55.6 6.8 76 145-220 7-93 (106)
289 PHA02987 Ig domain OX-2-like p 98.4 1.1E-05 2.3E-10 55.8 10.8 90 146-235 23-123 (189)
290 cd05711 Ig_FcalphaRI Immunoglo 98.4 1.6E-06 3.5E-11 54.2 6.4 74 9-120 2-75 (94)
291 cd05886 Ig1_Nectin-1_like Firs 98.4 9E-06 1.9E-10 51.2 9.7 35 198-233 63-98 (99)
292 cd04984 IgV_L_lambda Immunoglo 98.3 2.5E-06 5.3E-11 53.9 6.7 72 149-220 2-85 (98)
293 cd05846 Ig1_MRC-OX-2_like Firs 98.3 7.2E-06 1.6E-10 51.7 8.7 80 153-233 1-96 (97)
294 PF08205 C2-set_2: CD80-like C 98.3 1.4E-05 3.1E-10 49.4 9.8 84 9-124 1-85 (89)
295 cd04982 IgV_TCR_gamma Immunogl 98.3 4.5E-06 9.7E-11 54.5 7.6 75 145-219 5-98 (116)
296 cd00098 IgC Immunoglobulin Con 98.3 3.5E-06 7.6E-11 52.8 6.9 74 21-124 11-86 (95)
297 cd05771 IgC_Tapasin_R Tapasin- 98.3 2.1E-05 4.6E-10 53.1 10.9 87 7-124 37-132 (139)
298 cd00098 IgC Immunoglobulin Con 98.3 2.6E-06 5.7E-11 53.4 6.0 71 151-222 11-86 (95)
299 cd05711 Ig_FcalphaRI Immunoglo 98.3 1.2E-05 2.5E-10 50.3 8.8 81 148-233 10-94 (94)
300 cd07694 Ig2_CD4 Second immunog 98.3 1.4E-05 2.9E-10 48.2 8.0 62 149-220 10-73 (88)
301 cd07705 Ig2_Necl-1 Second immu 98.3 3E-05 6.6E-10 47.2 9.9 58 61-124 12-70 (83)
302 cd05902 Ig_Neurocan Immunoglob 98.2 1.6E-05 3.6E-10 51.0 8.7 81 153-234 2-107 (110)
303 cd05888 Ig1_Nectin-4_like Frst 98.2 2E-05 4.3E-10 49.9 8.9 78 155-233 2-99 (100)
304 cd05884 Ig2_Necl-3 Second immu 98.2 2.4E-05 5.3E-10 47.6 8.8 66 156-222 2-70 (83)
305 cd05755 Ig2_ICAM-1_like Second 98.2 1.4E-05 3.1E-10 50.1 7.9 71 150-223 13-87 (100)
306 cd05901 Ig_Versican Immunoglob 98.2 6.8E-05 1.5E-09 48.4 10.8 37 197-234 78-114 (117)
307 cd05887 Ig1_Nectin-3_like Firs 98.2 3.9E-05 8.4E-10 47.9 9.1 79 154-233 1-95 (96)
308 cd05884 Ig2_Necl-3 Second immu 98.2 3.4E-05 7.4E-10 46.9 8.6 58 61-124 12-70 (83)
309 cd05755 Ig2_ICAM-1_like Second 98.1 3.2E-05 6.9E-10 48.5 7.9 76 13-122 6-84 (100)
310 cd05716 Ig_pIgR Immunoglobulin 98.1 2.2E-05 4.7E-10 49.6 7.4 74 148-221 2-87 (98)
311 cd05772 IgC_SIRP Signal-regula 98.1 6E-05 1.3E-09 48.5 8.9 70 150-222 18-93 (111)
312 cd07700 IgV_CD8_beta Immunoglo 98.1 3.2E-05 7E-10 49.6 7.7 72 149-220 2-94 (107)
313 cd07694 Ig2_CD4 Second immunog 98.1 7.9E-05 1.7E-09 45.0 8.6 64 19-122 10-73 (88)
314 cd07696 IgC_CH3 CH3 domain (th 98.1 3.6E-05 7.8E-10 48.2 7.4 82 13-124 4-87 (96)
315 KOG1480|consensus 98.0 1.9E-06 4.1E-11 70.9 1.3 187 7-234 23-219 (909)
316 cd05772 IgC_SIRP Signal-regula 98.0 0.0001 2.2E-09 47.5 9.0 75 19-124 17-93 (111)
317 cd07699 IgC_L Immunoglobulin C 98.0 4.4E-05 9.6E-10 48.3 7.2 81 13-123 7-89 (100)
318 cd07698 IgC_MHC_I_alpha3 Class 98.0 0.00015 3.2E-09 45.3 9.5 69 23-124 14-84 (93)
319 cd05847 IgC_CH2_IgE CH2 domain 98.0 5.4E-05 1.2E-09 47.2 7.4 73 22-124 13-87 (94)
320 KOG3515|consensus 98.0 2E-05 4.4E-10 65.9 6.5 168 18-222 216-385 (741)
321 cd07698 IgC_MHC_I_alpha3 Class 97.9 0.00011 2.4E-09 45.8 8.0 67 153-222 14-84 (93)
322 cd00096 Ig Immunoglobulin doma 97.9 2.7E-05 5.7E-10 45.2 4.9 65 156-221 1-66 (74)
323 cd05889 Ig1_DNAM-1_like First 97.9 0.00033 7.1E-09 43.8 9.6 76 155-231 2-93 (96)
324 cd07706 IgV_TCR_delta Immunogl 97.9 7E-05 1.5E-09 48.9 7.0 75 145-219 6-93 (116)
325 PF07654 C1-set: Immunoglobuli 97.9 0.00017 3.6E-09 43.9 8.0 70 22-124 7-78 (83)
326 cd05769 IgC_TCR_beta T cell re 97.9 0.00013 2.8E-09 47.2 7.7 91 13-133 8-102 (115)
327 cd05720 Ig_CD8_alpha Immunoglo 97.9 6.1E-05 1.3E-09 48.1 6.0 70 150-219 3-90 (104)
328 PF08205 C2-set_2: CD80-like C 97.9 5.3E-05 1.2E-09 46.8 5.6 68 153-222 14-85 (89)
329 smart00407 IGc1 Immunoglobulin 97.9 0.00034 7.4E-09 41.6 8.9 54 64-123 16-71 (75)
330 cd00096 Ig Immunoglobulin doma 97.8 0.00019 4.1E-09 41.5 7.5 55 63-123 12-66 (74)
331 cd05712 Ig_Siglec_N Immunoglob 97.8 0.00016 3.6E-09 47.3 7.6 76 145-220 6-102 (119)
332 cd07703 Ig2_Nectin-2_like Seco 97.8 0.0007 1.5E-08 42.2 9.9 58 59-124 26-83 (95)
333 cd05768 IgC_CH4 CH4 domain (fo 97.8 0.00011 2.4E-09 46.6 6.5 82 13-124 6-92 (102)
334 cd05766 IgC_MHC_II_beta Class 97.8 0.00043 9.4E-09 43.2 8.9 71 21-124 12-84 (94)
335 cd05767 IgC_MHC_II_alpha Class 97.8 0.00073 1.6E-08 42.1 9.6 70 22-124 14-85 (94)
336 cd05847 IgC_CH2_IgE CH2 domain 97.8 0.0002 4.4E-09 44.6 7.0 69 152-222 13-87 (94)
337 smart00407 IGc1 Immunoglobulin 97.7 0.00019 4E-09 42.8 6.5 65 156-222 2-72 (75)
338 cd04986 IgC_CH2 CH2 domain (se 97.7 0.00022 4.8E-09 44.7 6.8 81 13-124 9-90 (99)
339 cd05719 Ig2_PVR_like Second im 97.7 0.00058 1.2E-08 42.7 8.7 58 59-124 26-83 (95)
340 cd05766 IgC_MHC_II_beta Class 97.7 0.0003 6.6E-09 43.9 7.2 67 151-222 12-84 (94)
341 PHA03271 envelope glycoprotein 97.7 0.0063 1.4E-07 47.4 15.3 79 97-180 204-289 (490)
342 cd07699 IgC_L Immunoglobulin C 97.7 0.00018 3.8E-09 45.5 6.1 72 150-222 14-90 (100)
343 cd07703 Ig2_Nectin-2_like Seco 97.7 0.00075 1.6E-08 42.1 8.7 66 154-222 16-83 (95)
344 cd05719 Ig2_PVR_like Second im 97.7 0.00075 1.6E-08 42.1 8.7 77 153-232 15-94 (95)
345 cd04981 IgV_H Immunoglobulin ( 97.7 0.00039 8.5E-09 45.4 7.8 75 145-219 4-97 (117)
346 cd07704 Ig2_Nectin-3-4_like Se 97.7 0.0009 2E-08 41.7 8.8 83 147-232 10-96 (97)
347 cd07696 IgC_CH3 CH3 domain (th 97.7 0.00041 8.9E-09 43.4 7.2 72 150-222 11-87 (96)
348 cd07697 IgC_TCR_gamma T cell r 97.6 0.0011 2.5E-08 41.3 8.9 73 19-124 12-86 (96)
349 cd05769 IgC_TCR_beta T cell re 97.6 0.00036 7.8E-09 45.2 6.8 70 152-222 17-93 (115)
350 cd04986 IgC_CH2 CH2 domain (se 97.6 0.00036 7.9E-09 43.7 6.5 72 150-222 16-90 (99)
351 cd05770 IgC_beta2m Class I maj 97.6 0.0019 4.2E-08 40.1 9.5 71 21-124 13-84 (93)
352 cd05768 IgC_CH4 CH4 domain (fo 97.6 0.00044 9.5E-09 43.9 6.5 69 152-222 15-92 (102)
353 cd05767 IgC_MHC_II_alpha Class 97.5 0.00063 1.4E-08 42.4 6.9 66 152-222 14-85 (94)
354 cd07697 IgC_TCR_gamma T cell r 97.5 0.00078 1.7E-08 42.1 7.0 66 152-222 15-86 (96)
355 cd07704 Ig2_Nectin-3-4_like Se 97.5 0.0038 8.2E-08 39.0 9.9 78 14-124 7-85 (97)
356 cd05770 IgC_beta2m Class I maj 97.5 0.0008 1.7E-08 41.8 6.7 66 152-222 14-84 (93)
357 smart00406 IGv Immunoglobulin 97.5 0.00062 1.4E-08 40.9 6.2 63 155-217 1-81 (81)
358 cd07691 Ig_CD3_gamma_delta Imm 97.4 0.00059 1.3E-08 39.0 5.2 31 101-134 34-64 (69)
359 PF07654 C1-set: Immunoglobuli 97.4 0.00033 7.2E-09 42.6 4.7 67 151-222 6-78 (83)
360 cd04985 IgC_CH1 CH1 domain (fi 97.4 0.0015 3.3E-08 40.8 7.6 71 22-123 15-87 (95)
361 cd07689 Ig2_VCAM-1 Second immu 97.4 0.00092 2E-08 41.5 6.3 71 150-222 12-87 (99)
362 PHA03270 envelope glycoprotein 97.3 0.053 1.2E-06 42.7 16.8 73 101-177 183-261 (466)
363 cd07692 Ig_CD3_epsilon Immunog 97.3 0.00051 1.1E-08 39.0 3.8 50 152-219 6-55 (65)
364 cd07691 Ig_CD3_gamma_delta Imm 97.2 0.0021 4.6E-08 36.8 5.8 60 153-235 6-65 (69)
365 PF08204 V-set_CD47: CD47 immu 97.2 0.00044 9.6E-09 45.3 3.4 82 19-122 23-107 (130)
366 cd04985 IgC_CH1 CH1 domain (fi 97.2 0.0018 3.9E-08 40.4 5.8 68 153-221 16-87 (95)
367 PHA02633 hypothetical protein; 97.1 0.0012 2.5E-08 36.8 4.1 39 196-235 16-54 (63)
368 PHA03271 envelope glycoprotein 97.1 0.019 4E-07 45.0 11.8 130 7-177 246-385 (490)
369 PHA03376 BARF1; Provisional 97.1 0.012 2.5E-07 41.1 9.6 74 148-221 21-110 (221)
370 PHA03269 envelope glycoprotein 97.1 0.021 4.6E-07 45.6 11.9 81 96-181 285-372 (566)
371 PHA02633 hypothetical protein; 97.0 0.0018 3.9E-08 36.1 4.1 34 101-134 19-53 (63)
372 PHA03269 envelope glycoprotein 96.9 0.032 6.8E-07 44.6 11.3 122 17-177 336-469 (566)
373 PHA02982 hypothetical protein; 96.8 0.1 2.2E-06 37.1 14.7 126 15-174 31-169 (251)
374 PF08204 V-set_CD47: CD47 immu 96.7 0.0025 5.3E-08 41.8 3.7 81 150-233 24-119 (130)
375 KOG4597|consensus 96.7 0.0045 9.7E-08 49.0 5.7 87 146-234 204-292 (560)
376 PHA03273 envelope glycoprotein 96.7 0.047 1E-06 43.4 10.9 78 99-181 197-280 (486)
377 PF07354 Sp38: Zona-pellucida- 96.6 0.0033 7.2E-08 46.0 4.1 50 166-221 11-60 (271)
378 cd05721 IgV_CTLA-4 Immunoglobu 96.5 0.021 4.5E-07 36.7 6.7 72 148-219 8-95 (115)
379 cd07692 Ig_CD3_epsilon Immunog 96.4 0.012 2.6E-07 33.5 4.7 20 101-121 36-55 (65)
380 PHA03270 envelope glycoprotein 96.4 0.21 4.6E-06 39.5 12.9 120 18-176 229-358 (466)
381 cd07689 Ig2_VCAM-1 Second immu 96.4 0.027 5.8E-07 35.1 6.4 17 20-36 12-28 (99)
382 PHA02982 hypothetical protein; 96.3 0.018 3.9E-07 40.7 6.1 77 148-224 34-126 (251)
383 PF07354 Sp38: Zona-pellucida- 95.9 0.013 2.9E-07 42.9 4.2 47 62-120 11-57 (271)
384 PHA03042 CD47-like protein; Pr 95.6 0.17 3.6E-06 37.5 8.6 70 151-232 29-103 (286)
385 PF11465 Receptor_2B4: Natural 95.1 0.081 1.8E-06 33.3 4.9 41 194-234 67-107 (108)
386 PHA03189 UL14 tegument protein 95.0 0.48 1E-05 35.8 9.5 25 14-38 58-82 (348)
387 PHA02914 Immunoglobulin-like d 95.0 1.4 3.1E-05 34.8 15.9 135 15-180 271-421 (500)
388 KOG1480|consensus 94.7 0.013 2.8E-07 49.3 1.1 75 10-122 131-205 (909)
389 PHA03273 envelope glycoprotein 94.6 1.9 4.2E-05 34.8 13.8 120 18-176 245-376 (486)
390 PHA03042 CD47-like protein; Pr 94.6 0.26 5.7E-06 36.6 7.3 64 20-121 28-91 (286)
391 PF11465 Receptor_2B4: Natural 94.0 0.92 2E-05 28.7 9.6 43 88-133 62-104 (108)
392 PHA02914 Immunoglobulin-like d 93.8 1.6 3.5E-05 34.5 10.3 41 98-138 79-119 (500)
393 PF05790 C2-set: Immunoglobuli 93.5 0.95 2.1E-05 27.2 7.7 20 199-218 44-63 (80)
394 cd05890 Ig2_Nectin-1_like Seco 92.9 1.4 3E-05 27.3 8.2 76 155-233 22-98 (98)
395 PHA02865 MHC-like TNF binding 91.5 0.81 1.8E-05 35.5 6.1 21 155-175 216-238 (338)
396 KOG4597|consensus 90.4 0.67 1.4E-05 37.4 4.9 90 10-133 198-291 (560)
397 PHA02865 MHC-like TNF binding 90.2 1.7 3.8E-05 33.8 6.9 17 107-123 288-304 (338)
398 PF06328 Lep_receptor_Ig: Ig-l 89.8 2.3 4.9E-05 26.2 6.0 72 15-119 10-81 (89)
399 PF02124 Marek_A: Marek's dise 88.2 8 0.00017 28.0 13.6 97 65-177 8-115 (211)
400 PHA03052 Hypothetical protein; 86.3 3.6 7.8E-05 23.6 4.8 38 15-75 4-41 (69)
401 KOG0613|consensus 82.8 4.6 0.0001 37.0 6.4 78 146-225 342-420 (1205)
402 PHA03052 Hypothetical protein; 82.3 4.4 9.5E-05 23.3 4.0 34 146-180 5-41 (69)
403 PHA03240 envelope glycoprotein 80.8 2.7 5.9E-05 30.1 3.5 21 98-119 103-123 (258)
404 PHA03189 UL14 tegument protein 78.2 29 0.00063 26.7 9.0 19 204-222 139-157 (348)
405 PHA02935 Hypothetical protein; 76.9 10 0.00022 27.0 5.5 94 65-163 68-165 (349)
406 PHA03112 IL-18 binding protein 75.2 14 0.0003 24.9 5.4 21 101-121 96-117 (141)
407 PF03921 ICAM_N: Intercellular 73.5 19 0.00041 22.3 10.0 80 145-237 10-89 (91)
408 PHA03286 envelope glycoprotein 72.2 11 0.00025 30.5 5.2 24 101-124 308-331 (492)
409 PHA03240 envelope glycoprotein 72.0 26 0.00056 25.4 6.4 29 194-222 101-129 (258)
410 cd05890 Ig2_Nectin-1_like Seco 71.7 22 0.00047 22.2 7.2 56 59-122 31-86 (98)
411 PHA03112 IL-18 binding protein 67.5 35 0.00077 23.0 6.4 73 150-222 35-120 (141)
412 KOG0200|consensus 64.4 64 0.0014 28.0 8.6 114 101-221 14-140 (609)
413 PF05790 C2-set: Immunoglobuli 63.5 30 0.00065 20.8 9.5 21 101-121 44-64 (80)
414 PF06328 Lep_receptor_Ig: Ig-l 62.6 23 0.0005 21.8 4.2 32 148-180 13-49 (89)
415 PF02480 Herpes_gE: Alphaherpe 60.5 19 0.00041 29.6 4.6 25 99-123 268-292 (439)
416 PHA03282 envelope glycoprotein 60.2 20 0.00043 29.4 4.5 27 98-124 331-357 (540)
417 PHA03282 envelope glycoprotein 57.5 29 0.00063 28.5 5.0 41 194-234 120-161 (540)
418 KOG0613|consensus 53.2 25 0.00053 32.7 4.4 115 101-221 394-516 (1205)
419 PF06832 BiPBP_C: Penicillin-B 51.7 53 0.0011 19.9 7.2 53 155-223 31-83 (89)
420 PF11049 KSHV_K1: Glycoprotein 51.4 46 0.00099 19.1 5.8 49 66-139 13-61 (71)
421 KOG3611|consensus 50.2 48 0.001 29.4 5.6 62 155-221 571-635 (737)
422 PHA03283 envelope glycoprotein 46.2 66 0.0014 27.0 5.4 27 97-123 312-338 (542)
423 PHA03283 envelope glycoprotein 45.9 44 0.00095 28.0 4.4 38 197-235 133-170 (542)
424 PF02480 Herpes_gE: Alphaherpe 45.6 6.9 0.00015 32.1 0.0 38 198-235 89-126 (439)
425 PF01688 Herpes_gI: Alphaherpe 45.6 63 0.0014 22.5 4.6 26 98-123 122-147 (161)
426 KOG1026|consensus 45.5 91 0.002 27.8 6.4 98 115-224 253-354 (774)
427 PHA03286 envelope glycoprotein 42.9 53 0.0011 27.0 4.3 38 197-234 126-163 (492)
428 PHA03290 envelope glycoprotein 41.0 77 0.0017 24.9 4.8 37 98-134 127-164 (357)
429 PF02440 Adeno_E3_CR1: Adenovi 39.7 74 0.0016 18.1 4.8 19 152-174 4-22 (63)
430 PF13220 DUF4028: Protein of u 37.0 45 0.00097 18.0 2.2 17 207-223 7-23 (65)
431 PHA03292 envelope glycoprotein 36.6 1.5E+02 0.0032 23.9 5.8 27 98-124 126-152 (413)
432 KOG1026|consensus 30.5 48 0.001 29.4 2.6 28 148-175 202-229 (774)
433 PHA03281 envelope glycoprotein 28.1 1.3E+02 0.0028 25.6 4.5 39 197-235 297-335 (642)
434 PF11327 DUF3129: Protein of u 26.8 1.4E+02 0.003 21.3 4.1 26 98-123 91-116 (184)
435 PF15096 G6B: G6B family 26.3 50 0.0011 23.4 1.7 17 205-221 81-97 (224)
436 PHA03289 envelope glycoprotein 25.7 1.3E+02 0.0027 23.7 3.8 26 99-124 121-146 (352)
437 PHA03281 envelope glycoprotein 24.9 1.5E+02 0.0033 25.2 4.4 25 99-123 474-498 (642)
438 PF05955 Herpes_gp2: Equine he 24.5 2.7E+02 0.0058 19.8 13.3 64 157-221 111-179 (226)
439 KOG3611|consensus 24.1 1.8E+02 0.0038 26.1 4.9 27 101-127 613-639 (737)
440 PF03712 Cu2_monoox_C: Copper 21.5 87 0.0019 21.6 2.2 20 16-35 85-104 (156)
441 PHA03291 envelope glycoprotein 21.0 1.8E+02 0.004 23.2 3.9 37 98-134 127-164 (401)
442 TIGR00864 PCC polycystin catio 20.5 1.1E+03 0.024 25.5 16.5 86 149-235 991-1085(2740)
443 TIGR00864 PCC polycystin catio 20.3 1.1E+03 0.024 25.5 16.8 70 108-178 1835-1907(2740)
No 1
>KOG3513|consensus
Probab=99.93 E-value=1.1e-24 Score=181.06 Aligned_cols=187 Identities=24% Similarity=0.413 Sum_probs=151.2
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
...|.++..+++..+..|+++.+.|.+. +.|.|.+.|++++..+....
T Consensus 329 ~a~P~w~~~~~d~~~~~gs~v~~eC~a~--------------------------g~P~p~v~WlkNg~pl~~~~------ 376 (1051)
T KOG3513|consen 329 YAPPYWLQKPQDTEADTGSNVTLECKAS--------------------------GKPNPTVKWLKNGEPLEPAE------ 376 (1051)
T ss_pred ecCchhhcccceeEecCCCCeEEEEEec--------------------------CCCCCceEEeeCCeecCccC------
Confidence 3579999999999999999999999995 46688899999887654211
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcC-CcccccccCCceeecCCCcEEEEEEEc
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIP-PDISSEETSGDMMVPEGGSAKLVCKAK 163 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~-~~~~~~~~~~~~~~~~g~~~~l~C~~~ 163 (238)
.+.+..+... +|+|.+++.+|+|.|.|.++|. +.....+.|.|... |.+...+......+..|..+.|.|...
T Consensus 377 r~~~~~i~~g-----~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~ 451 (1051)
T KOG3513|consen 377 RDPRYKIDDG-----TLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPF 451 (1051)
T ss_pred CCcceEEeCC-----EEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccC
Confidence 1233555444 9999999999999999999886 55677889999854 777666666666788899999999999
Q ss_pred cccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 164 GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 164 ~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
+.|.|.+.|.++++ .+. ...+.....+++|.|.+++.+|+|.|+|.|+|..|.+ ..+..|.|..++
T Consensus 452 asP~p~~~W~k~~~-~~~------~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a-~~~~~L~Vkd~t 517 (1051)
T KOG3513|consen 452 ASPKPKVSWLKGGE-KLL------QSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKA-ESTGNLIVKDAT 517 (1051)
T ss_pred CCCcceEEEEcCCc-ccc------cCceEEECCCCcEEecccCcccCcEEEEEEEcccCcc-ceEEEEEEecCc
Confidence 99999999999554 322 1244556678899999999999999999999999955 888888887654
No 2
>KOG3513|consensus
Probab=99.93 E-value=9.4e-24 Score=175.48 Aligned_cols=184 Identities=25% Similarity=0.461 Sum_probs=143.7
Q ss_pred ccccceecc-CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe
Q psy7941 6 GFEPDFLYP-LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI 84 (238)
Q Consensus 6 ~~~p~~~~~-~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~ 84 (238)
..+|.|... ++...+..|+++.|.|.+ .|+|.|++.|.|.++....
T Consensus 238 ~~~P~i~~~~p~~~~a~~G~~v~LECfA--------------------------~G~P~P~i~W~k~~g~~~~------- 284 (1051)
T KOG3513|consen 238 EYAPKILVPFPETETALKGQSVKLECFA--------------------------LGNPTPQIKWRKVDGKPPP------- 284 (1051)
T ss_pred ccCCccccCCCCcccccCCCeEEEEEEe--------------------------cCCCCCcEEEEeCCCCCCC-------
Confidence 346777643 557889999999999998 4678999999999885321
Q ss_pred ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEc
Q psy7941 85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK 163 (238)
Q Consensus 85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~ 163 (238)
.|...... + -+|.|.+++.+|+|.|.|.++|. +.......+.|..+|.+.. ...+..+..|+++.|.|.+.
T Consensus 285 ---~r~~~~~~--~-~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~--~~~d~~~~~gs~v~~eC~a~ 356 (1051)
T KOG3513|consen 285 ---RRATYSNY--G-KVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQ--KPQDTEADTGSNVTLECKAS 356 (1051)
T ss_pred ---cceeeecc--c-cEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhc--ccceeEecCCCCeEEEEEec
Confidence 12211111 1 19999999999999999999886 5556677788888888865 45667788999999999999
Q ss_pred cccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEee
Q psy7941 164 GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCT 236 (238)
Q Consensus 164 ~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~ 236 (238)
|.|.|.++|++ ++.++.... .........+.|.|.+++..|+|.|.|.|+|.+| ...+.+.|.|...
T Consensus 357 g~P~p~v~Wlk-Ng~pl~~~~----r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G-~i~anA~L~V~a~ 423 (1051)
T KOG3513|consen 357 GKPNPTVKWLK-NGEPLEPAE----RDPRYKIDDGTLIISNVQESDSGVYQCIAENKYG-TIYANAELKVLAS 423 (1051)
T ss_pred CCCCCceEEee-CCeecCccC----CCcceEEeCCEEEEEecccccCeEEEeeeecccc-eEeeeeEEEEEcc
Confidence 99999999999 666665322 1122345667899999999999999999999999 5588888988864
No 3
>KOG4194|consensus
Probab=99.89 E-value=1.2e-22 Score=158.94 Aligned_cols=206 Identities=25% Similarity=0.367 Sum_probs=149.3
Q ss_pred cCCCccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee
Q psy7941 2 VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE 81 (238)
Q Consensus 2 ~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~ 81 (238)
|.....+|++...|+.+.+..|..+.|+|.+..... .+..+.|.+++........+
T Consensus 497 vC~DspkpqI~~qPe~~~al~g~nirftC~a~sssa------------------------splsi~WR~dnevq~rv~ve 552 (873)
T KOG4194|consen 497 VCDDSPKPQIVTQPETVSALIGENIRFTCNAYSSSA------------------------SPLSIEWRKDNEVQPRVDVE 552 (873)
T ss_pred eecCCCCcceecCchHhhhhhccceEEEEEeccCCC------------------------CCceeEeeeccccCcccchh
Confidence 445567899999999999999999999999975322 25579999976532211111
Q ss_pred eE--eecCccEEE-EEcCCCeEEEEEcccCcccCeEEEEEEecCC--CcceeeEEEEEcCCcccccccCCceeecCCCcE
Q psy7941 82 HV--ITNNARLSV-THNDANTWTLNIRSVRREDRGYYMCQVNTNP--MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSA 156 (238)
Q Consensus 82 ~~--~~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~ 156 (238)
.. +....|-.. .........|.+.|++..|.|.|.|++.|.- .-+.++.+.|...|.+.. .+.++.+..|..+
T Consensus 553 d~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtk--tP~dltl~tg~mA 630 (873)
T KOG4194|consen 553 DFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTK--TPEDLTLRTGQMA 630 (873)
T ss_pred cchhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCcccc--Ccccceeecccce
Confidence 00 000000000 0011123479999999999999999998853 335577788888887764 4667889999999
Q ss_pred EEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEee
Q psy7941 157 KLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCT 236 (238)
Q Consensus 157 ~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~ 236 (238)
.|.|.+.|.|.|+|.|-++++..++.-.. ........+..+.|.++..+|.|.|+|.|.|.+| ..+...+|.|...
T Consensus 631 rl~CaAtG~P~PeIawqkdggtdFPAA~e---RRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG-~isanAtL~V~e~ 706 (873)
T KOG4194|consen 631 RLECAATGHPRPEIAWQKDGGTDFPAARE---RRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAG-QISANATLTVLET 706 (873)
T ss_pred eeeeeccCCCCcceeehhcCCCCCchhhh---heeeecCCCCEEEEecccccccceeEEeeecccc-ceeeceEEEEecC
Confidence 99999999999999999977765544321 1222344556889999999999999999999999 5588999999887
Q ss_pred c
Q psy7941 237 Y 237 (238)
Q Consensus 237 p 237 (238)
|
T Consensus 707 p 707 (873)
T KOG4194|consen 707 P 707 (873)
T ss_pred C
Confidence 6
No 4
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.88 E-value=5.4e-21 Score=138.27 Aligned_cols=190 Identities=16% Similarity=0.273 Sum_probs=112.8
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEE
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT 93 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (238)
....+.+.+|+++.|.|.+.+.....+.. ......+.+.|+|.+......... .......+...
T Consensus 28 ~~~~~~v~eGe~v~L~C~~~~~~~~~~~~---------------~~~~~~~~V~W~k~~s~~~v~~~~-~~~~~~~i~~~ 91 (227)
T PHA02826 28 DLTPVYAKFGDPMVLLCTGKHYKKSIFFD---------------KTFITSYNVTWSKTDSLAFVRDSG-ARTKIKKITHN 91 (227)
T ss_pred CcceEEecCCCCEEEEccccccccccccc---------------cccCCCccEEEEeCCeEEEEEcCC-Ccccccccccc
Confidence 45678899999999999986421100000 000224579999976432211100 00000000000
Q ss_pred EcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEc-----cccC
Q psy7941 94 HNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK-----GYPT 167 (238)
Q Consensus 94 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-----~~p~ 167 (238)
.......+|.|.+++.+|+|.|+|.+.+... ......|.|..+ .....+.+|+.+.|.|.+. +.|.
T Consensus 92 ~~~~r~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~--------~~~~~~~~G~~v~L~C~~~~~~~~~~p~ 163 (227)
T PHA02826 92 EIGDRSENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSG--------TINYQFNSGKDSKLHCYGTDGISSTFKD 163 (227)
T ss_pred ceecCCCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecC--------CccceEecCCCEEEEeeCCCCccccCCC
Confidence 0011133899999999999999999987542 233334444321 1224567899999999975 3467
Q ss_pred CeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC-CC--CccceEEEEE
Q psy7941 168 PKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV-PP--TVSKRLMLHV 233 (238)
Q Consensus 168 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~-g~--~~~~~~~l~V 233 (238)
|+++|++ ++..+.... .......++.|.|.++..+|+|.|+|.|.... |. ..++.+.|+|
T Consensus 164 p~I~WyK-ng~~l~~~~-----r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~~g~~y~~t~~~~~~~ 226 (227)
T PHA02826 164 YTLTWYK-NGNIVLYTD-----RIQLRNNNSTLVIKSATHDDSGIYTCNLRFNKNSNNYNITKEYKVTI 226 (227)
T ss_pred ceEEEEE-CCEECCCCC-----CEEEeCCCCEEEECcCCHHhCEEEEEEEEEeECCEEEEEEEEEEEEE
Confidence 8999999 555543211 11122234579999999999999999999865 32 3355555543
No 5
>KOG4194|consensus
Probab=99.88 E-value=4.6e-21 Score=150.24 Aligned_cols=199 Identities=25% Similarity=0.356 Sum_probs=144.9
Q ss_pred eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCe-----------------EEeccCCCCceEEEEeCCceeeeeee
Q psy7941 18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGS-----------------IVFPTDSSAMKVAWIKADTKAVLAIH 80 (238)
Q Consensus 18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~W~~~~~~~~~~~~ 80 (238)
..|.-++.+.|+|.++|.-|..++..+..++...+++ .+-+.|.|.|+|.|.|+++...+...
T Consensus 579 ~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~ 658 (873)
T KOG4194|consen 579 DNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAAR 658 (873)
T ss_pred eeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhh
Confidence 3577899999999999999998888777776443333 33447789999999998876433221
Q ss_pred eeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEE
Q psy7941 81 EHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLV 159 (238)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~ 159 (238)
..|..+...+ -.+.|.|++.+|+|.|+|.+++. +..+..+.+.|...|.+..+ ..+..+..|+.+.|+
T Consensus 659 ------eRRl~Vmped---d~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~P--L~~~~V~~get~vlq 727 (873)
T KOG4194|consen 659 ------ERRLHVMPED---DVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIP--LEDQLVVVGETLVLQ 727 (873)
T ss_pred ------hheeeecCCC---CEEEEecccccccceeEEeeeccccceeeceEEEEecCCccccc--ccceEEEecceEEEE
Confidence 1233222221 27889999999999999999875 66778889999988887765 344667889999999
Q ss_pred EEEccccC-CeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941 160 CKAKGYPT-PKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 160 C~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
|.+.+.|. |.+.|+++++........ .....+--|.+.+...+|+|.|+|...|..|.. ...+.+.|.
T Consensus 728 C~a~~~~a~pr~~W~k~d~pil~t~rh------~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~-~~~i~l~~~ 796 (873)
T KOG4194|consen 728 CLAEGAPADPRLEWFKEDKPILITERH------TFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTE-RIHICLLVY 796 (873)
T ss_pred EecCCCCCCccccccCCCCceEEeecc------cCCCCCeEEEEEehhhhhcceEEEEEEeeccce-eeEEEEEEe
Confidence 99999877 899999966655443321 111223356677788899999999999999843 455555444
No 6
>KOG4221|consensus
Probab=99.87 E-value=1.4e-20 Score=156.95 Aligned_cols=184 Identities=27% Similarity=0.474 Sum_probs=140.3
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN 87 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 87 (238)
.+.|...+.+..+..|+++.|.|.+.. .|.+.+.|.+++..+.. +
T Consensus 140 ~~~f~~~~~~~t~~~g~ta~f~c~vn~--------------------------e~~p~i~w~kn~~pl~~---------~ 184 (1381)
T KOG4221|consen 140 LADFALQPESTTLLYGQTALFSCEVNA--------------------------EPVPTIMWLKNDQPLPL---------D 184 (1381)
T ss_pred cCccccCccceeEecCCcEEEEEEEcC--------------------------ccCceeEEecccccccC---------C
Confidence 577888888999999999999998853 23457999998775432 3
Q ss_pred ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC--CcceeeEEEEEcCCc----ccccccCCceeecCCCcEEEEEE
Q psy7941 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP--MTKQMAFLEVVIPPD----ISSEETSGDMMVPEGGSAKLVCK 161 (238)
Q Consensus 88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~~~~~----~~~~~~~~~~~~~~g~~~~l~C~ 161 (238)
+|+...-++ .|.|.+++..|.|.|.|.++++. ..+..+.|+|...+. ..+...+....+.+|+.+.|.|.
T Consensus 185 ~r~i~lpsG----~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCv 260 (1381)
T KOG4221|consen 185 SRVIVLPSG----ALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECV 260 (1381)
T ss_pred CcEEEcCCC----cEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEE
Confidence 355444433 89999999999999999998753 346677888874332 22344566677899999999999
Q ss_pred EccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 162 AKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 162 ~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
+.+.|.|.|.|.+ ++..+.... ..+.....+.|.|++++..|+|.|+|.|.|... ...+...|.|..+|
T Consensus 261 vs~~p~p~v~Wlr-ng~~i~~ds-----~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D-~idasaev~V~a~P 329 (1381)
T KOG4221|consen 261 VSGVPKPSVKWLR-NGEKISVDS-----YRIVLVGGSSLLISNATDDDSGKYTCRATNTND-SIDASAEVTVLAPP 329 (1381)
T ss_pred ecCCCCCceEEee-CCeeeeecc-----eEEEEecccceEEeccccccCceEEEEecCCCc-ccccceEEEEEcCC
Confidence 9999999999999 666665422 344455567899999999999999999999554 33666777887766
No 7
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.86 E-value=1.6e-19 Score=138.53 Aligned_cols=187 Identities=17% Similarity=0.250 Sum_probs=116.6
Q ss_pred EEEecCCEEEEeEEecCCCceeeeeeeeee----------------eecCCeEEecc--------CCCCceEEEEeCCce
Q psy7941 19 TIAQGRDAIFTCVVNNLGGHRVSSSVTDTH----------------VNTGGSIVFPT--------DSSAMKVAWIKADTK 74 (238)
Q Consensus 19 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~--------~~~~~~~~W~~~~~~ 74 (238)
.+...|++.|.|.++|..+.. ..++.+++ ...|....+.| +.|++.++|+++..
T Consensus 88 ~~~~~DsG~Y~C~a~N~~g~~-~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~- 165 (326)
T PHA02785 88 NPTQSDSGIYICITKNETYCD-MMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR- 165 (326)
T ss_pred ccCcccCeEEEEEEECCCcce-EEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-
Confidence 356689999999999876432 12221111 22344455555 36788999988532
Q ss_pred eeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cc----eeeEEEEEcCCcccccccCCcee
Q psy7941 75 AVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TK----QMAFLEVVIPPDISSEETSGDMM 149 (238)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~----~~~~l~v~~~~~~~~~~~~~~~~ 149 (238)
+ ...++..... ..|.|.+++.+|+|.|+|.+.+... .. ..+.+.|..+...+....+....
T Consensus 166 ~----------~~~r~~~~~~----~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~ 231 (326)
T PHA02785 166 L----------RNKRLKQRTP----GIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVV 231 (326)
T ss_pred c----------CCcceEecCC----CeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEE
Confidence 1 1233333211 2899999999999999999977422 21 12234444222111112235567
Q ss_pred ecCCCcEEEEEEEccccC---CeEEEEeCCCeeeEeecCCCCCcce-----------EEEeeceEEEEEeecCCCeEEEE
Q psy7941 150 VPEGGSAKLVCKAKGYPT---PKITWRREDNKEIIVRSNPPSSQKV-----------FSVESEVLSLTKVTRSEMGAYQC 215 (238)
Q Consensus 150 ~~~g~~~~l~C~~~~~p~---~~~~W~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~i~~~~~~d~G~y~C 215 (238)
+..|+.+.|.|.+.|.|. +.+.|++ ++..+...+.. ..... .......|.|.++..+|.|.|+|
T Consensus 232 ~~~G~~v~L~C~a~g~P~~~~~~v~W~k-ng~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C 309 (326)
T PHA02785 232 TSIGSNLTIACRVSLRPPTTDADVFWIS-NGMYYEEDDED-GDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTC 309 (326)
T ss_pred ecCCCcEEEEEEEECCCCCCCceEEEEE-CCEECCCcCCC-CceeEEEecCccccccceeeeEEEEECCcchhcCeeeEE
Confidence 788999999999998776 4899999 55544321100 00000 01123479999999999999999
Q ss_pred EeeeCCCC
Q psy7941 216 IAANGVPP 223 (238)
Q Consensus 216 ~~~n~~g~ 223 (238)
.|.|..|.
T Consensus 310 ~A~n~~~~ 317 (326)
T PHA02785 310 MAFTIPSI 317 (326)
T ss_pred EEEeccCc
Confidence 99998863
No 8
>KOG4221|consensus
Probab=99.83 E-value=7.3e-20 Score=152.76 Aligned_cols=176 Identities=23% Similarity=0.463 Sum_probs=133.9
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCcc
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNAR 89 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~ 89 (238)
.|...+....+..||++.|.|.++ +.|.|++.|++++.++... +.|
T Consensus 239 ~fl~~p~~~~v~~g~~v~leCvvs--------------------------~~p~p~v~Wlrng~~i~~d--------s~r 284 (1381)
T KOG4221|consen 239 VFLDEPSNAVVVEGDDVVLECVVS--------------------------GVPKPSVKWLRNGEKISVD--------SYR 284 (1381)
T ss_pred eeecCCCccccccCCcEEEEEEec--------------------------CCCCCceEEeeCCeeeeec--------ceE
Confidence 477888899999999999999995 4567889999977765432 234
Q ss_pred EEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCC
Q psy7941 90 LSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP 168 (238)
Q Consensus 90 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~ 168 (238)
+.+.... +|.|.+++..|+|.|+|++.|. ......+.++|..+|.+.. .+..+...++.++.|.|.+.|.|.|
T Consensus 285 ivl~g~~----slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~--~p~~l~A~e~~die~ec~~~g~p~p 358 (1381)
T KOG4221|consen 285 IVLVGGS----SLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTK--APTTLVAHESMDIEFECPVSGKPIP 358 (1381)
T ss_pred EEEeccc----ceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCC--CCcceeeeeccceeEeCCCCCCCcc
Confidence 4433222 8999999999999999999773 4456678899999887764 3455677779999999999999999
Q ss_pred eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941 169 KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233 (238)
Q Consensus 169 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V 233 (238)
.+.|++ ++..+... .......+..|.|..+-..|.|.|.|.++|..|.. .....+.|
T Consensus 359 ~v~w~k-Ngd~~ips------dy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a-~a~a~l~v 415 (1381)
T KOG4221|consen 359 TVRWYK-NGDRIIPS------DYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGSA-QAAAQLEV 415 (1381)
T ss_pred eEEEEe-cCcccCcc------cceEecCCCCcEEEEEecccchhhhhhhccCcccc-cchhhhee
Confidence 999999 55544332 22333344448888899999999999999999954 55444433
No 9
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.79 E-value=1.4e-17 Score=127.92 Aligned_cols=173 Identities=16% Similarity=0.322 Sum_probs=110.1
Q ss_pred eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcC
Q psy7941 17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHND 96 (238)
Q Consensus 17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (238)
...+.+|+.+.|.|.+.+. +..+.|.+.+.|+|++..... .... ..
T Consensus 35 ~~~~~~ge~~~l~C~~~~~---------------------~~~g~p~~~i~W~K~g~~~~~-----------~~~~-~~- 80 (326)
T PHA02785 35 SFMELENEPVILPCPQINT---------------------LSSGYNILDILWEKRGADNDR-----------IIPI-DN- 80 (326)
T ss_pred hhhhhcCCCEEEECCCccc---------------------cccCCCCceEEEEECCCccce-----------EEEc-cC-
Confidence 4456789999999987431 013455778999998643110 0000 01
Q ss_pred CCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEE-----EccccCCeE
Q psy7941 97 ANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCK-----AKGYPTPKI 170 (238)
Q Consensus 97 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~-----~~~~p~~~~ 170 (238)
+. .|.|.++..+|+|.|+|.+.|... ....+.|+|................+.+|..+.|.|. ..+.|.+.+
T Consensus 81 -g~-~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i 158 (326)
T PHA02785 81 -GS-NMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADI 158 (326)
T ss_pred -Cc-eEEEcccCcccCeEEEEEEECCCcceEEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceE
Confidence 11 577899999999999999987643 3445566665432211111122234668899999997 235688899
Q ss_pred EEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC---ccceEEEEEE
Q psy7941 171 TWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT---VSKRLMLHVH 234 (238)
Q Consensus 171 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~---~~~~~~l~V~ 234 (238)
+|++ +.. +. ........++.|.|.++..+|.|.|+|.+.|..|.. .++.+.|.|.
T Consensus 159 ~W~k-~~~-~~-------~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~ 216 (326)
T PHA02785 159 IWSG-HRR-LR-------NKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVR 216 (326)
T ss_pred EEcc-CCc-cC-------CcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEe
Confidence 9987 332 11 012222234689999999999999999999988743 1334455554
No 10
>KOG4222|consensus
Probab=99.75 E-value=1.4e-17 Score=138.56 Aligned_cols=193 Identities=23% Similarity=0.376 Sum_probs=144.2
Q ss_pred CCEEEEeEEecCCCceeeeeeee---------------eeeecCCeEEeccC----CCCceEEEEeCCceeeeeeeeeEe
Q psy7941 24 RDAIFTCVVNNLGGHRVSSSVTD---------------THVNTGGSIVFPTD----SSAMKVAWIKADTKAVLAIHEHVI 84 (238)
Q Consensus 24 ~~~~l~C~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~----~~~~~~~W~~~~~~~~~~~~~~~~ 84 (238)
+-+.|.|.++|..+...+....+ +....|+...+.|+ .|.+.+.|.|++..+....
T Consensus 103 d~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~----- 177 (1281)
T KOG4222|consen 103 DHGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYD----- 177 (1281)
T ss_pred CCceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCcccccc-----
Confidence 77799999999877766653322 23567888888877 5688999999887765211
Q ss_pred ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC--CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEE
Q psy7941 85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN--PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKA 162 (238)
Q Consensus 85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~ 162 (238)
..++.+.+-+ .|.|.|+...|.|.|.|+++|. ...+..+.+.|+..|.+... +....+..|..+.+.|.+
T Consensus 178 --~~~~~lisgG----~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~r--p~~~~v~~g~~~~f~c~v 249 (1281)
T KOG4222|consen 178 --VPIIALISGG----NLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKR--PKDLAVLVGAAAEFDCRV 249 (1281)
T ss_pred --ceeEEEecCC----cEEEeccccCCCceeeeeecccccccccccceeeeccCCccccc--cccceeeccccccccccc
Confidence 1222222222 8999999999999999999874 33455678888888877643 555778889999999999
Q ss_pred ccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 163 KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 163 ~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
.|.|.|.+.|.+++. .+... .........+|.|.++...|.|.|.|.+.|..| ...++..++|+.+|
T Consensus 250 ~GdP~P~Vrwkk~~~-~~P~~------ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG-~l~asa~ltV~apP 316 (1281)
T KOG4222|consen 250 GGDPQPTVRWKKDDP-SLPRS------RYSILDDTQTLRIDRVTPTDEGTYVCPAENLVG-GLEASATLTVQAPP 316 (1281)
T ss_pred CCCCCCceeeeccCC-CCCcc------ceeeeeccccccccccCCCcccceeeecccccc-ccccccceEEecCc
Confidence 999999999999443 33211 222334446799999999999999999999999 55888888998876
No 11
>KOG4222|consensus
Probab=99.70 E-value=3.4e-16 Score=130.58 Aligned_cols=186 Identities=25% Similarity=0.459 Sum_probs=142.0
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
.+|.|...+....+..|+++.+.|.+. ++|.+++.|.+.+....
T Consensus 224 e~P~f~~rp~~~~v~~g~~~~f~c~v~--------------------------GdP~P~Vrwkk~~~~~P---------- 267 (1281)
T KOG4222|consen 224 EKPWFWKRPKDLAVLVGAAAEFDCRVG--------------------------GDPQPTVRWKKDDPSLP---------- 267 (1281)
T ss_pred cCCccccccccceeecccccccccccC--------------------------CCCCCceeeeccCCCCC----------
Confidence 578999999999999999999999984 56788899999665532
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccc
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY 165 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~ 165 (238)
..|+.+..... +|.|.+++..|.|.|.|.+.+. +.....+.++|+.+|.+... +....+..|..+.|.|.+.|.
T Consensus 268 ~~ry~i~~d~q---tl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kk--p~dq~v~lg~~vt~pc~~~gn 342 (1281)
T KOG4222|consen 268 RSRYSILDDTQ---TLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKK--PRDQKVALGGTVTFPCETLGN 342 (1281)
T ss_pred ccceeeeeccc---cccccccCCCcccceeeeccccccccccccceEEecCcccccc--cCccccccCceEEeeeecCCC
Confidence 44555443311 8999999999999999999875 56677889999999988754 344567779999999999999
Q ss_pred cCCeEEEEeCCCeeeEeecC-CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941 166 PTPKITWRREDNKEIIVRSN-PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233 (238)
Q Consensus 166 p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V 233 (238)
|.|.+.|.+++...+..... .....+........|+|.++...|.|.|.|...+..|....+.....+
T Consensus 343 P~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt 411 (1281)
T KOG4222|consen 343 PPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQT 411 (1281)
T ss_pred CCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEE
Confidence 99999999977665544322 111222223334489999999999999999998888866555554433
No 12
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.66 E-value=8.1e-16 Score=97.21 Aligned_cols=88 Identities=24% Similarity=0.284 Sum_probs=68.5
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
+....+..|+.+.|.|.+.|.|.+.+.|++ ++..+.... ..........+.|.|.++..+|+|.|+|.|.|..|..
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~p~p~v~W~k-dg~~l~~~~---~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~ 82 (98)
T cd05762 7 PEDMKVRAGESVELFCKVTGTQPITCTWMK-FRKQIQEGE---GIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSR 82 (98)
T ss_pred CcCEEEECCCEEEEEEEEcccCCCceEEEE-CCEEecCCC---cEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCce
Confidence 455778999999999999999999999999 555553211 0011111234579999999999999999999999955
Q ss_pred ccceEEEEEEeec
Q psy7941 225 VSKRLMLHVHCTY 237 (238)
Q Consensus 225 ~~~~~~l~V~~~p 237 (238)
..++.|.|..+|
T Consensus 83 -~~~~~l~V~~~P 94 (98)
T cd05762 83 -QAQVNLTVVDKP 94 (98)
T ss_pred -eEEEEEEEecCC
Confidence 889999998876
No 13
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.65 E-value=6.2e-15 Score=93.17 Aligned_cols=94 Identities=20% Similarity=0.388 Sum_probs=71.8
Q ss_pred cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCc
Q psy7941 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNA 88 (238)
Q Consensus 9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ 88 (238)
|.|...++.+.+..|+++.|.|.+. +.|++.+.|+|++..+. .+.
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~--------------------------G~p~p~v~W~kdg~~l~---------~~~ 45 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVT--------------------------GTQPITCTWMKFRKQIQ---------EGE 45 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEc--------------------------ccCCCceEEEECCEEec---------CCC
Confidence 6788899999999999999999995 45678899999876542 123
Q ss_pred cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCc
Q psy7941 89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPD 138 (238)
Q Consensus 89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~ 138 (238)
++.+.... ....|.|.++..+|+|.|+|.+.|. +.....+.|.|...|.
T Consensus 46 ~~~~~~~~-~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P~ 95 (98)
T cd05762 46 GIKIENTE-NSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKPD 95 (98)
T ss_pred cEEEEecC-CeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCCC
Confidence 34433222 2338999999999999999999886 4456677788876664
No 14
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.64 E-value=2.1e-15 Score=93.53 Aligned_cols=81 Identities=25% Similarity=0.397 Sum_probs=63.0
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
+.+..+.+|+.+.|.|.+.|.|.|.++|++++ ..+.. .......+..|.|.++..+|.|.|+|.|.|..|..
T Consensus 8 ~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~-~~~~~-------~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 79 (88)
T cd05851 8 FKDTYALKGQNVTLECFALGNPVPVIRWRKIL-EPMPA-------TAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKD 79 (88)
T ss_pred cccEEEeCCCcEEEEEEecccCCCEEEEEECC-cCCCC-------CCEEecCCCEEEECcCChhhCEEEEEEEEcCCCce
Confidence 34566889999999999999999999999944 33321 11122345579999999999999999999999954
Q ss_pred ccceEEEEEE
Q psy7941 225 VSKRLMLHVH 234 (238)
Q Consensus 225 ~~~~~~l~V~ 234 (238)
...+.|.|+
T Consensus 80 -~~~~~l~V~ 88 (88)
T cd05851 80 -KHQARVYVQ 88 (88)
T ss_pred -EEEEEEEEC
Confidence 777777763
No 15
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.63 E-value=2.6e-15 Score=90.11 Aligned_cols=74 Identities=30% Similarity=0.632 Sum_probs=57.9
Q ss_pred CCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEE
Q psy7941 152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLML 231 (238)
Q Consensus 152 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l 231 (238)
+|+.+.|.|.+.|.|.|.+.|++ ++..+... ........+.|.|.++..+|.|.|+|.|.|..|.. +.++.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k-~g~~~~~~------~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~L 72 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTK-GGSQLSVD------RRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQ-RTVAQL 72 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEE-CCEECCCC------CCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCce-eEEEEE
Confidence 58899999999999999999999 55444321 11223345689999999999999999999999944 777776
Q ss_pred EE
Q psy7941 232 HV 233 (238)
Q Consensus 232 ~V 233 (238)
.|
T Consensus 73 ~V 74 (74)
T cd05745 73 TV 74 (74)
T ss_pred eC
Confidence 54
No 16
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.62 E-value=5e-15 Score=93.73 Aligned_cols=83 Identities=28% Similarity=0.415 Sum_probs=63.9
Q ss_pred CceeecCCCcEEEEEEEcc-ccCCeEEEEeCCCeeeEeecCCCCCcceEE------EeeceEEEEEeecCCCeEEEEEee
Q psy7941 146 GDMMVPEGGSAKLVCKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFS------VESEVLSLTKVTRSEMGAYQCIAA 218 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~ 218 (238)
..+.+.+|+.+.|.|.+.| .|+|.+.|++ ++.++.... ...... .....|.|.++..+|+|.|+|.|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~K-dg~~i~~~~----~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~ 85 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTY-DNRTLTNKL----TEIVTSENESEYRYVSELKLVRLKESEAGTYTFLAS 85 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEe-CCeeCCCCc----ceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEE
Confidence 4567889999999999999 8899999999 565553211 011111 123579999999999999999999
Q ss_pred eCCCCCccceEEEEEE
Q psy7941 219 NGVPPTVSKRLMLHVH 234 (238)
Q Consensus 219 n~~g~~~~~~~~l~V~ 234 (238)
|..|. .+.++.|.|+
T Consensus 86 N~~G~-~~~t~~L~V~ 100 (101)
T cd04975 86 NSDAS-KSLTFELYVN 100 (101)
T ss_pred CCCcc-EEEEEEEEEE
Confidence 99994 4888888876
No 17
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.61 E-value=1.2e-14 Score=90.09 Aligned_cols=86 Identities=20% Similarity=0.312 Sum_probs=64.2
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN 87 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 87 (238)
+|.|...+.+..+.+|+++.|.|.+. +.|.|.++|+|++..... .
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~--------------------------G~P~P~v~W~k~~~~~~~---------~ 45 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFAL--------------------------GNPVPVIRWRKILEPMPA---------T 45 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEec--------------------------ccCCCEEEEEECCcCCCC---------C
Confidence 58889999999999999999999985 466888999998754321 1
Q ss_pred ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEE
Q psy7941 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEV 133 (238)
Q Consensus 88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 133 (238)
.++... ...|.|.+++.+|+|.|+|.+.|. +.....+.|.|
T Consensus 46 ~~~~~~-----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 87 (88)
T cd05851 46 AEISMS-----GAVLKIFNIQPEDEGTYECEAENIKGKDKHQARVYV 87 (88)
T ss_pred CEEecC-----CCEEEECcCChhhCEEEEEEEEcCCCceEEEEEEEE
Confidence 122221 128999999999999999999886 33444555544
No 18
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.61 E-value=7.3e-15 Score=91.45 Aligned_cols=82 Identities=28% Similarity=0.490 Sum_probs=64.7
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
.....+.+|+.+.|.|.+.|. .|.+.|++ ++..+... .......+..|.|.++..+|+|.|.|.|.|..|..
T Consensus 10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~k-ng~~l~~~------~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 81 (91)
T cd05740 10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVN-NGSLLVPP------RLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNM 81 (91)
T ss_pred cCccccccCCcEEEEEEeCCC-CCEEEEEE-CCEECCCC------CEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCE
Confidence 445678899999999999999 99999999 44443211 11122334589999999999999999999999987
Q ss_pred ccceEEEEEE
Q psy7941 225 VSKRLMLHVH 234 (238)
Q Consensus 225 ~~~~~~l~V~ 234 (238)
.+..+.|.|+
T Consensus 82 ~S~~~~L~V~ 91 (91)
T cd05740 82 TSDPYILNVN 91 (91)
T ss_pred EeeeEEEEeC
Confidence 7888888874
No 19
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.61 E-value=9.1e-15 Score=92.31 Aligned_cols=85 Identities=25% Similarity=0.501 Sum_probs=64.3
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
.....+..|+.+.|.|.+.|.|.|.+.|++ ++..+... ............|.|.++..+|.|.|+|.|.|..|.
T Consensus 10 ~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k-~g~~~~~~----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~- 83 (95)
T cd05730 10 EVNATANLGQSVTLACDADGFPEPTMTWTK-DGEPIESG----EEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGE- 83 (95)
T ss_pred ccceEEeCCCCEEEEEeccEeCCCEEEEEE-CCEECcCC----CCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCe-
Confidence 344568899999999999999999999999 55444321 011111223447999999999999999999999995
Q ss_pred ccceEEEEEEe
Q psy7941 225 VSKRLMLHVHC 235 (238)
Q Consensus 225 ~~~~~~l~V~~ 235 (238)
...++.|.|..
T Consensus 84 ~~~~~~L~V~~ 94 (95)
T cd05730 84 QEAEIHLKVFA 94 (95)
T ss_pred EEEEEEEEEEe
Confidence 47888888764
No 20
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.60 E-value=7.3e-15 Score=90.57 Aligned_cols=82 Identities=23% Similarity=0.404 Sum_probs=61.1
Q ss_pred ceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEE-EeeceEEEEEeecCCCeEEEEEeeeCCCCCc
Q psy7941 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS-VESEVLSLTKVTRSEMGAYQCIAANGVPPTV 225 (238)
Q Consensus 147 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~ 225 (238)
.+.+..|+.+.|.|.+.|.|.|.+.|++ ++..+.... ....... ...+.|.|..+..+|+|.|+|.|.|..|..
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k-~~~~i~~~~---~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~- 78 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSR-GDKAFTETE---GRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGED- 78 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEE-CCEECccCC---CeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcE-
Confidence 3567889999999999999999999999 555443211 0011111 123579999999999999999999999954
Q ss_pred cceEEEEE
Q psy7941 226 SKRLMLHV 233 (238)
Q Consensus 226 ~~~~~l~V 233 (238)
+.++.|.|
T Consensus 79 ~~~~~l~V 86 (86)
T cd05894 79 HASLFVKV 86 (86)
T ss_pred EEEEEEEC
Confidence 77777654
No 21
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.60 E-value=5.8e-15 Score=87.94 Aligned_cols=73 Identities=25% Similarity=0.544 Sum_probs=56.5
Q ss_pred CCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEE
Q psy7941 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH 232 (238)
Q Consensus 153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~ 232 (238)
|+.+.|.|.+.|.|.|.+.|++ ++..+... .......++.|.|.++..+|.|.|+|.|.|..|.. +.+..|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k-~~~~l~~~------~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~ 72 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSK-GTELLVNN------SRISIWDDGSLEILNITKLDEGSYTCFAENNRGKA-NSTGVLS 72 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEe-CCEecccC------CCEEEcCCCEEEECcCChhHCEEEEEEEECCCCce-eEEEEEE
Confidence 5789999999999999999999 44443211 22333345689999999999999999999999954 6666665
Q ss_pred E
Q psy7941 233 V 233 (238)
Q Consensus 233 V 233 (238)
|
T Consensus 73 ~ 73 (73)
T cd05852 73 V 73 (73)
T ss_pred C
Confidence 4
No 22
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.59 E-value=3.7e-14 Score=89.94 Aligned_cols=86 Identities=28% Similarity=0.512 Sum_probs=61.4
Q ss_pred CceeecCCCcEEEEEEEccccCCeEEEEeCCC-eeeEeecCCCCCcceEEE---eeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941 146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDN-KEIIVRSNPPSSQKVFSV---ESEVLSLTKVTRSEMGAYQCIAANGV 221 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~-~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~C~~~n~~ 221 (238)
....+.+|+.+.|.|.+.|.|.|.+.|++... ..+...... ........ ....|.|.++..+|+|.|+|.|.|..
T Consensus 9 ~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~-~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 87 (98)
T cd05870 9 KNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKS-PDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRI 87 (98)
T ss_pred ccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcC-cCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccC
Confidence 45678899999999999999999999998532 222111100 01111111 23479999999999999999999999
Q ss_pred CCCccceEEEEE
Q psy7941 222 PPTVSKRLMLHV 233 (238)
Q Consensus 222 g~~~~~~~~l~V 233 (238)
|.. .+++.|.|
T Consensus 88 G~~-~~~~~l~~ 98 (98)
T cd05870 88 GGH-QKSMYLDI 98 (98)
T ss_pred Ccc-eeEEEEeC
Confidence 944 77777764
No 23
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.58 E-value=8.2e-15 Score=85.22 Aligned_cols=66 Identities=29% Similarity=0.502 Sum_probs=52.9
Q ss_pred EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
+.|.|.+.|+|.|.+.|++ ++..+... ...+.|.|.++..+|+|.|+|.|.|..| ..++++.+.|.
T Consensus 1 ~~l~c~v~g~P~P~v~W~k-dg~~l~~~-----------~~~~~L~i~~v~~~D~G~YtC~a~N~~g-~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYK-DGKLISGK-----------HSQHSLQIKDVTEASAGTYTLVLWNSAA-GLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEE-CCEECccc-----------CCcCEEEECCCCHHHCEEEEEEEEECCc-cEEEEEEEEEE
Confidence 4789999999999999999 56555311 1345799999999999999999999999 44777766653
No 24
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.58 E-value=1.8e-14 Score=88.60 Aligned_cols=82 Identities=23% Similarity=0.285 Sum_probs=59.7
Q ss_pred CcEEEEEEEccccCC--eEEEEeCCCeeeEeecCCCCCcce-EEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEE
Q psy7941 154 GSAKLVCKAKGYPTP--KITWRREDNKEIIVRSNPPSSQKV-FSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLM 230 (238)
Q Consensus 154 ~~~~l~C~~~~~p~~--~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~ 230 (238)
+++.|.|.+.|.|.| .+.|++ ++..+............ .....+.|.|.+++..|+|.|+|.|.|..| ..++++.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~-~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g-~~~~~~~ 78 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSL-DDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVD-SASASAT 78 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEE-CCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCC-CEEEEEE
Confidence 368999999999877 689999 55444321110010011 112345899999999999999999999999 4488999
Q ss_pred EEEEeec
Q psy7941 231 LHVHCTY 237 (238)
Q Consensus 231 l~V~~~p 237 (238)
|.|..||
T Consensus 79 L~V~~~P 85 (85)
T cd05854 79 LVVRGPP 85 (85)
T ss_pred EEEECCC
Confidence 9999887
No 25
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.58 E-value=3.1e-14 Score=88.54 Aligned_cols=81 Identities=22% Similarity=0.447 Sum_probs=62.7
Q ss_pred CceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEee---ceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVES---EVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
....+..|+.+.|.|.+.|.|. .+.|+++++..+... .......+ ..|.|.++..+|+|.|+|.|.|..|
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~------~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G 80 (92)
T cd05866 8 SKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSS------QRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKG 80 (92)
T ss_pred cceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCC------CCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCC
Confidence 3456888999999999999998 999998656544321 11222222 3799999999999999999999999
Q ss_pred CCccceEEEEE
Q psy7941 223 PTVSKRLMLHV 233 (238)
Q Consensus 223 ~~~~~~~~l~V 233 (238)
....+++.|.|
T Consensus 81 ~~~~~~i~l~~ 91 (92)
T cd05866 81 QTQEATVVLEI 91 (92)
T ss_pred cEEEEEEEEEE
Confidence 76688888876
No 26
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.58 E-value=2.1e-14 Score=88.96 Aligned_cols=80 Identities=20% Similarity=0.294 Sum_probs=60.1
Q ss_pred CCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEE-----EeeceEEEEEeecCCCeEEEEEeeeCCCCCccc
Q psy7941 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS-----VESEVLSLTKVTRSEMGAYQCIAANGVPPTVSK 227 (238)
Q Consensus 153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~ 227 (238)
|+.+.|.|.+.|.|.+.+.|++ ++..+.... ....... ...+.|.|.++..+|+|.|+|.|.|..|. .+.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k-~~~~i~~~~---~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~-~~~ 75 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEK-EDRIINPEM---SRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGE-DRG 75 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEee-CCEECCCCC---CcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCc-ceE
Confidence 6789999999999999999999 444432111 0010110 11246999999999999999999999995 489
Q ss_pred eEEEEEEeec
Q psy7941 228 RLMLHVHCTY 237 (238)
Q Consensus 228 ~~~l~V~~~p 237 (238)
.+.|.|..+|
T Consensus 76 ~~~L~V~~~P 85 (88)
T cd05735 76 IIQLTVQEPP 85 (88)
T ss_pred EEEEEEeCCC
Confidence 9999999877
No 27
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.58 E-value=2.8e-14 Score=89.39 Aligned_cols=83 Identities=18% Similarity=0.395 Sum_probs=61.1
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEE--eeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV--ESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
+..+.+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.... ....... ....|.|.++..+|+|.|+|.|.|..|
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k-~g~~l~~~~----~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 82 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLK-NDQALALSD----HYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYG 82 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCCeEEEEE-CCEECccCC----CEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCC
Confidence 445678899999999999999999999999 554443211 0111111 123699999999999999999999999
Q ss_pred CCccceEEEEE
Q psy7941 223 PTVSKRLMLHV 233 (238)
Q Consensus 223 ~~~~~~~~l~V 233 (238)
.. +..+.|.|
T Consensus 83 ~~-~~~~~v~v 92 (92)
T cd05737 83 GE-TVDVTVSV 92 (92)
T ss_pred cc-eEEEEEeC
Confidence 44 66666654
No 28
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.58 E-value=4e-14 Score=88.89 Aligned_cols=83 Identities=17% Similarity=0.384 Sum_probs=60.3
Q ss_pred CceeecCCCcEEEEEEEccccC-CeEEEEeCCCeeeEeecCCCCCcceEEEe----eceEEEEEeecCCCeEEEEEeeeC
Q psy7941 146 GDMMVPEGGSAKLVCKAKGYPT-PKITWRREDNKEIIVRSNPPSSQKVFSVE----SEVLSLTKVTRSEMGAYQCIAANG 220 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~y~C~~~n~ 220 (238)
....+..|+.+.|.|.+.|.|. |.+.|++.++..+.... ....... .+.|.|.++..+|+|.|+|.|.|.
T Consensus 8 ~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~-----~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~ 82 (96)
T cd05865 8 SQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQ-----QRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNE 82 (96)
T ss_pred CccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccC-----CeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcC
Confidence 3446788999999999999985 69999985554332211 1111111 247999999999999999999999
Q ss_pred CCCCccceEEEEE
Q psy7941 221 VPPTVSKRLMLHV 233 (238)
Q Consensus 221 ~g~~~~~~~~l~V 233 (238)
.|....+++.|.|
T Consensus 83 ~~g~~~~s~~l~v 95 (96)
T cd05865 83 DEGESEATVNVKI 95 (96)
T ss_pred CCCcEEEEEEEEE
Confidence 8335477877776
No 29
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.57 E-value=1.1e-13 Score=86.50 Aligned_cols=91 Identities=19% Similarity=0.392 Sum_probs=66.2
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEE
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTH 94 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (238)
.+++.+.+|+++.|.|.+.+ .|.+.+.|++++..... ........+.|+.+..
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g--------------------------~~~~~v~W~k~~~~~~~-~~~~~~~~~~r~~~~~ 56 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKE--------------------------HDNSSLQWSNTAQQTLY-FGEKRALRDNRIQLVK 56 (95)
T ss_pred cccEEEecCCcEEEEEEEeC--------------------------CCCCeEEEeccCccEEE-eCCeEEEeCCeEEEEe
Confidence 45788999999999999964 34567999998765332 2223333456777665
Q ss_pred cCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEE
Q psy7941 95 NDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLE 132 (238)
Q Consensus 95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~ 132 (238)
.....++|.|.+++.+|+|.|+|.+.......+.+.+.
T Consensus 57 ~~~~~~~L~I~nV~~~D~G~YtC~~~t~~~~~~~~~~~ 94 (95)
T cd05882 57 STPTELIISISNVQLSDEGEYTCSIFTMPVRTAKATVT 94 (95)
T ss_pred CCCceEEEEECCCCcccCEEEEEEEEeeccccEEEEEE
Confidence 55567899999999999999999997655445555543
No 30
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.57 E-value=2.6e-14 Score=88.11 Aligned_cols=80 Identities=30% Similarity=0.497 Sum_probs=62.8
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
+....+..|+.+.|.|.+.|.|.|.+.|++ ++..+... . .....++.|.|.++..+|+|.|+|.|.|..|.
T Consensus 6 p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k-~g~~~~~~------~-~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~- 76 (85)
T cd05728 6 ISDTEADIGSSLRWECKASGNPRPAYRWLK-NGQPLASE------N-RIEVEAGDLRITKLSLSDSGMYQCVAENKHGT- 76 (85)
T ss_pred CCccEEcCCCcEEEEEEeeEeCCCEEEEEE-CCEECCCC------C-eEEEeCCEEEEeeCCHHHCEEEEEEEECCCCe-
Confidence 445678899999999999999999999999 55444211 1 12335668999999999999999999999994
Q ss_pred ccceEEEEE
Q psy7941 225 VSKRLMLHV 233 (238)
Q Consensus 225 ~~~~~~l~V 233 (238)
...++.|.|
T Consensus 77 ~~~~~~l~V 85 (85)
T cd05728 77 IYASAELAV 85 (85)
T ss_pred EEEEEEEEC
Confidence 477776654
No 31
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.57 E-value=2.1e-14 Score=86.61 Aligned_cols=75 Identities=35% Similarity=0.498 Sum_probs=57.4
Q ss_pred CCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEE
Q psy7941 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH 232 (238)
Q Consensus 153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~ 232 (238)
|+.+.|.|.+.|.|.|.++|++ ++..+.... . .......++.|.|.+++.+|+|.|+|.|.|..|.. ...+.|.
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k-~g~~i~~~~---~-~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 74 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSI-NGAPIEGTD---P-DPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNL-LANAHVH 74 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEE-CCEECCCCC---C-CceEEeeCCEEEECCCChhhCEEEEEEEECCCCeE-EEEEEEE
Confidence 6789999999999999999999 555443211 1 11223345689999999999999999999999954 6677776
Q ss_pred E
Q psy7941 233 V 233 (238)
Q Consensus 233 V 233 (238)
|
T Consensus 75 V 75 (76)
T cd05867 75 V 75 (76)
T ss_pred E
Confidence 6
No 32
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.57 E-value=2.6e-14 Score=90.57 Aligned_cols=86 Identities=20% Similarity=0.309 Sum_probs=62.5
Q ss_pred ceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCC---CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPP---SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP 223 (238)
Q Consensus 147 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~ 223 (238)
...+..|+.+.|.|.+.|+|.|.+.|++ ++.++....... ..........+.|.|.++..+|+|.|+|.|.|..|.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~k-dg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~ 90 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLK-DNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV 90 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEE-CCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence 3567788999999999999999999999 555543221100 000000112357999999999999999999999994
Q ss_pred CccceEEEEEE
Q psy7941 224 TVSKRLMLHVH 234 (238)
Q Consensus 224 ~~~~~~~l~V~ 234 (238)
.+.++.|.|+
T Consensus 91 -~~~t~~l~V~ 100 (101)
T cd05859 91 -KSYTFALQIQ 100 (101)
T ss_pred -EEEEEEEEEE
Confidence 4778888775
No 33
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.57 E-value=1.1e-13 Score=86.05 Aligned_cols=91 Identities=21% Similarity=0.405 Sum_probs=69.1
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEE
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTH 94 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (238)
.+++.+.+|+++.|+|.+.+..... +.|++.+...+.... .....+.||.+..
T Consensus 4 ~~nvtv~~G~ta~L~C~v~~~~~~~--------------------------v~w~~~~~~~i~~~~-~~~~~d~Rf~~~~ 56 (95)
T cd05881 4 TEDVTVVEGEVAIISCRVKNNDDSV--------------------------IQLLNPNRQTIYFRD-VRPLKDSRFQLVN 56 (95)
T ss_pred cCceEEcCCCcEEEEEEEccCCccE--------------------------EEEEecCCcEEEecC-ccccCCcCEEEEe
Confidence 4568899999999999998755433 889987755443333 3444688999887
Q ss_pred cCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEE
Q psy7941 95 NDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLE 132 (238)
Q Consensus 95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~ 132 (238)
.....++|.|.+++.+|+|.|+|.+.........+.+.
T Consensus 57 ~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~p~~~~~~~~~ 94 (95)
T cd05881 57 FSSNELRVSLSNVSLSDEGRYFCQLYTDPPQEAYTTIT 94 (95)
T ss_pred CCCCEEEEEECcCCcccCEEEEEEEEcccCeEEEEEEE
Confidence 56788899999999999999999997766555554443
No 34
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.56 E-value=4.4e-14 Score=87.82 Aligned_cols=81 Identities=26% Similarity=0.421 Sum_probs=62.8
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
+....+.+|+.+.|.|.+.|.|.|.+.|++++..... . ......++.|.|.++..+|+|.|+|.|.|..|.
T Consensus 8 p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~-~-------~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~- 78 (88)
T cd04968 8 PKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPS-S-------AEISMSGAVLKIPNIQFEDEGTYECEAENIKGK- 78 (88)
T ss_pred CCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCC-c-------cEEEEeCCEEEECCCCcccCEEEEEEEEECCCc-
Confidence 3446678899999999999999999999995543221 1 111235568999999999999999999999995
Q ss_pred ccceEEEEEE
Q psy7941 225 VSKRLMLHVH 234 (238)
Q Consensus 225 ~~~~~~l~V~ 234 (238)
...+..|.|+
T Consensus 79 ~~~~~~l~V~ 88 (88)
T cd04968 79 DTHQGRIYVQ 88 (88)
T ss_pred EEEEEEEEEC
Confidence 4777777763
No 35
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.56 E-value=2.2e-14 Score=87.21 Aligned_cols=78 Identities=26% Similarity=0.510 Sum_probs=56.8
Q ss_pred EEEEEEEccccCCeEEEEeCCCeeeEeecCC-CCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNP-PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233 (238)
Q Consensus 156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V 233 (238)
+.|.|.+.|+|.|.+.|+++++......... ..........++.|.|.++..+|+|.|.|.|.|..|...++++.|.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 4799999999999999999544321111000 01122223345689999999999999999999999988788888765
No 36
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.56 E-value=2.2e-14 Score=85.76 Aligned_cols=72 Identities=26% Similarity=0.451 Sum_probs=52.2
Q ss_pred EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe-e--ceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEE
Q psy7941 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE-S--EVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH 232 (238)
Q Consensus 156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~--~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~ 232 (238)
+.|.|.+.|.|.|.+.|++ ++..+.... ........ . ..|.|.++..+|+|.|+|.|.|..|.. +.+..|.
T Consensus 1 v~l~C~v~G~P~P~i~W~k-~~~~i~~~~----~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~a~L~ 74 (75)
T cd05892 1 VKLECQISAIPPPKIFWKR-NNEMVQYNT----DRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVA-TCHARLD 74 (75)
T ss_pred CEEEEEEEecCCCeEEEEE-CCEECcCCC----CeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeE-EEEEEEe
Confidence 4799999999999999999 555543211 11111111 1 269999999999999999999999944 6666665
Q ss_pred E
Q psy7941 233 V 233 (238)
Q Consensus 233 V 233 (238)
|
T Consensus 75 V 75 (75)
T cd05892 75 V 75 (75)
T ss_pred C
Confidence 4
No 37
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.56 E-value=5.4e-14 Score=87.11 Aligned_cols=82 Identities=30% Similarity=0.565 Sum_probs=63.0
Q ss_pred CceeecCCCcEEEEEEE-ccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 146 GDMMVPEGGSAKLVCKA-KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
....+.+|+.+.|.|.+ .|.|.|.+.|++ ++..+... .........+.|.|.++..+|+|.|+|.+.|..|..
T Consensus 4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k-~g~~~~~~-----~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 77 (86)
T cd05724 4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRK-DGQPLNLD-----NERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGER 77 (86)
T ss_pred ccEEEeCCCCEEEEEECCCCCCCCEEEEEE-CCEECCCC-----CCCEEEccCCEEEEeECCcccCEEEEEEEEeccCce
Confidence 45677899999999998 789999999999 55443321 112222335689999999999999999999999977
Q ss_pred ccceEEEEE
Q psy7941 225 VSKRLMLHV 233 (238)
Q Consensus 225 ~~~~~~l~V 233 (238)
.++.+.|.|
T Consensus 78 ~s~~~~l~V 86 (86)
T cd05724 78 ESAAARLSV 86 (86)
T ss_pred eeeeEEEEC
Confidence 677777654
No 38
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.56 E-value=2e-13 Score=92.35 Aligned_cols=120 Identities=23% Similarity=0.364 Sum_probs=75.6
Q ss_pred EEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc-ccC-CeEEEEeCCC
Q psy7941 101 TLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPT-PKITWRREDN 177 (238)
Q Consensus 101 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-~~~~W~~~~~ 177 (238)
+|.|.+++.+|+|.|.|.+.+. +.....+.|.|..+|.+.... .......|..+.|.|.+.| +|. ..+.|++++.
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~--~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~ 79 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSL--EKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPP 79 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeC--CCceeecCCcEEEEEEECCCCCCCeEEEEEECCC
Confidence 7999999999999999999764 444556778888888775432 2233346888999999988 565 4899999543
Q ss_pred eeeE----eecC----CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 178 KEII----VRSN----PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 178 ~~~~----~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
.... .... ......-.....+.|.+..-...+...|+|.+.|...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 80 GDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred CCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence 2111 0000 0000000111223455544333445599999998764
No 39
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.56 E-value=7.6e-14 Score=87.05 Aligned_cols=83 Identities=28% Similarity=0.545 Sum_probs=61.0
Q ss_pred CCcEEEEEEEccccCCeEEEEeCCCeeeEeecC-CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEE
Q psy7941 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN-PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLML 231 (238)
Q Consensus 153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l 231 (238)
|+.+.|.|.+.|.|.|.+.|++++......... ...........++.|.|.++..+|+|.|+|.|.|..|. ....+.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l 79 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGS-ILTKAYL 79 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCc-eEEEEEE
Confidence 678999999999999999999965433211110 01112222333557999999999999999999999995 4788899
Q ss_pred EEEee
Q psy7941 232 HVHCT 236 (238)
Q Consensus 232 ~V~~~ 236 (238)
.|..+
T Consensus 80 ~V~~~ 84 (90)
T cd05726 80 EVTDV 84 (90)
T ss_pred EEeec
Confidence 99864
No 40
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.56 E-value=1.8e-14 Score=86.24 Aligned_cols=71 Identities=25% Similarity=0.461 Sum_probs=51.8
Q ss_pred EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEee----ceEEEEEeecCCCeEEEEEeeeCCCCCccceEEE
Q psy7941 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVES----EVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLML 231 (238)
Q Consensus 156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l 231 (238)
+.|.|.+.|.|.|.+.|++ ++..+.... ........ ..|.|.++..+|+|.|+|.|.|..|.. +.+..|
T Consensus 1 v~l~C~v~G~P~P~v~W~k-~~~~l~~~~-----~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~a~L 73 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKK-ENESLTHNT-----DRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIV-SCTARL 73 (75)
T ss_pred CEEEEEEeEecCCEEEEEE-CCEECCCCC-----CeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEE-EEEEEE
Confidence 4799999999999999999 444442111 11112111 159999999999999999999999944 667766
Q ss_pred EE
Q psy7941 232 HV 233 (238)
Q Consensus 232 ~V 233 (238)
.|
T Consensus 74 ~V 75 (75)
T cd05893 74 DV 75 (75)
T ss_pred eC
Confidence 54
No 41
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.55 E-value=6.5e-14 Score=88.63 Aligned_cols=83 Identities=25% Similarity=0.488 Sum_probs=58.6
Q ss_pred eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEE---EeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS---VESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
..+..|+.+.|.|.+.|.|.|.++|++ ++..+...... ....... ...+.|.|.++..+|.|.|+|.|.|..|..
T Consensus 12 ~~~~~g~~v~l~C~~~G~P~P~v~W~~-~~~~~~~~~~~-~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 89 (97)
T cd05869 12 TAMELEEQITLTCEASGDPIPSITWRT-STRNISSEEKT-LDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQD 89 (97)
T ss_pred eEEEcCCCEEEEEEeeEeCCCEEEEEE-CCccccCCccc-cCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCe
Confidence 345558999999999999999999999 44333211100 0111111 112479999999999999999999999944
Q ss_pred ccceEEEEE
Q psy7941 225 VSKRLMLHV 233 (238)
Q Consensus 225 ~~~~~~l~V 233 (238)
+.++.|.|
T Consensus 90 -~~~~~l~v 97 (97)
T cd05869 90 -SQSMYLEV 97 (97)
T ss_pred -eEEEEEEC
Confidence 77777765
No 42
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.55 E-value=2e-14 Score=85.40 Aligned_cols=71 Identities=28% Similarity=0.481 Sum_probs=54.5
Q ss_pred EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
+.|.|.+.|.|.|.+.|+++++. +... ..........|.|.++..+|.|.|+|.|.|..|. .++++.|.|.
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~-~~~~------~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~Ve 71 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGP-LSPN------RTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGS-ARHHYTVTVE 71 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcC-CCCC------ceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCe-EEEEEEEEEC
Confidence 46899999999999999995543 2211 1112334568999999999999999999999995 4788888763
No 43
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.55 E-value=1.4e-13 Score=86.02 Aligned_cols=78 Identities=26% Similarity=0.517 Sum_probs=63.3
Q ss_pred cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCc
Q psy7941 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNA 88 (238)
Q Consensus 9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ 88 (238)
|.|...+..+.+.+|+++.|.|.+.+ .|.+.+.|++++..+.. ..
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~--------------------------~p~~~v~W~~~~~~l~~---------~~ 45 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSG--------------------------NPPPTVTWYKNGRPLTS---------SQ 45 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEE--------------------------SSSSEEEEEETTEEEES---------SS
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEe--------------------------CCCCcccccccccceee---------ee
Confidence 78899999999999999999999964 34678999998665432 44
Q ss_pred cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
++.+.... ...+|.|.+++.+|+|.|+|.+.+.
T Consensus 46 ~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~~~n~ 78 (90)
T PF07679_consen 46 RYQIESDG-GSSSLTIKNVTREDAGTYTCVASNS 78 (90)
T ss_dssp SEEEEEET-TEEEEEESSESGGGSEEEEEEEEET
T ss_pred eeeeeccc-ceeEEccCCCChhhCEEEEEEEEEC
Confidence 55554433 5669999999999999999999876
No 44
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.55 E-value=3.5e-14 Score=84.38 Aligned_cols=71 Identities=27% Similarity=0.490 Sum_probs=53.4
Q ss_pred cEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941 155 SAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233 (238)
Q Consensus 155 ~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V 233 (238)
++.|.|.+.|.|.|.++|++++ ..+... ........+.|.|.++..+|.|.|+|.|.|..|.. ..++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g-~~~~~~------~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNG-DMVIPS------DYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNV-QASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECC-eECCCC------CCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEE-EEEEEEEC
Confidence 3789999999999999999944 433211 11223344568899999999999999999999944 67776654
No 45
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.55 E-value=4.1e-14 Score=85.17 Aligned_cols=75 Identities=25% Similarity=0.520 Sum_probs=57.3
Q ss_pred CCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEE
Q psy7941 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH 232 (238)
Q Consensus 153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~ 232 (238)
|+.+.|.|.+.|.|.|.++|++ ++..+..... .......+..|.+.+++.+|.|.|+|.|.|..|. ...++.|.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k-~g~~i~~~~~----~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~ 74 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLT-NGVPIEIAPT----DPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGY-LLANAFVN 74 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEE-CCEEccccCC----CceEEecCCEEEECCCCHhhCEEEEEEEEcCCCE-EEEEEEEE
Confidence 5788999999999999999999 5655532111 1112234457899999999999999999999994 47777777
Q ss_pred E
Q psy7941 233 V 233 (238)
Q Consensus 233 V 233 (238)
|
T Consensus 75 v 75 (76)
T cd05868 75 V 75 (76)
T ss_pred e
Confidence 6
No 46
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.55 E-value=2.5e-14 Score=88.27 Aligned_cols=82 Identities=22% Similarity=0.206 Sum_probs=60.0
Q ss_pred CcEEEEEEEccccCC--eEEEEeCCCeeeEeecCCCCC-cceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEE
Q psy7941 154 GSAKLVCKAKGYPTP--KITWRREDNKEIIVRSNPPSS-QKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLM 230 (238)
Q Consensus 154 ~~~~l~C~~~~~p~~--~~~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~ 230 (238)
+.+.|.|.+.|.|.| .+.|++ ++..+......... ........+.|.|.+++..|+|.|+|.|.|..|. .++++.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~-~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~ 78 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSF-NGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDS-LSASAD 78 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEE-CCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCc-EEEEEE
Confidence 368999999999887 679999 55554322110000 0111223567999999999999999999999994 488999
Q ss_pred EEEEeec
Q psy7941 231 LHVHCTY 237 (238)
Q Consensus 231 l~V~~~p 237 (238)
|.|..||
T Consensus 79 l~V~~pP 85 (85)
T cd04970 79 LIVRGPP 85 (85)
T ss_pred EEEECCC
Confidence 9999887
No 47
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.54 E-value=8e-14 Score=83.68 Aligned_cols=74 Identities=31% Similarity=0.579 Sum_probs=57.0
Q ss_pred CCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEE
Q psy7941 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH 232 (238)
Q Consensus 153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~ 232 (238)
|+.+.|.|.+.|.|.|.+.|++.++..+... ........+.|.|..+..+|.|.|+|.|.|..|. .+.++.|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~------~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~ 73 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNS------SRTLVYDNGTLDILITTVKDTGSFTCIASNAAGE-ATATVELH 73 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCC------CeEEEecCCEEEEEECChhhCEEEEEEEECCCCe-EEEEEEEE
Confidence 6789999999999999999998555544311 1122334568999999999999999999999994 47777665
Q ss_pred E
Q psy7941 233 V 233 (238)
Q Consensus 233 V 233 (238)
|
T Consensus 74 v 74 (74)
T cd05764 74 I 74 (74)
T ss_pred C
Confidence 4
No 48
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.54 E-value=2.4e-13 Score=85.34 Aligned_cols=92 Identities=23% Similarity=0.452 Sum_probs=65.1
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEE
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTH 94 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (238)
++++.+.+|+++.|.|.+.+. |.+.+.|++.++..+.. .......++|+....
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~--------------------------p~~~v~W~~~~~~~l~~-~~~~~~~~~r~~~~~ 56 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQN--------------------------DNTSLQWSNPAQQTLYF-DDKKALRDNRIELVR 56 (95)
T ss_pred cceEEEecCCcEEEEEEEecC--------------------------CceEEEEeCCCCeEEEE-cCcccccCCCEEEEE
Confidence 467889999999999999643 35669999865543321 111122356777644
Q ss_pred cCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEE
Q psy7941 95 NDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV 133 (238)
Q Consensus 95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v 133 (238)
.....++|.|.+++.+|+|.|+|.+.+.......+.|.|
T Consensus 57 ~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~~~~~~~l~v 95 (95)
T cd07701 57 ASWHELSISISDVSLSDEGQYTCSLFTMPVKTSKAYLTV 95 (95)
T ss_pred CCCCcEEEEECcCCcccCEEEEEEeEeecCccEEEEEEC
Confidence 444667999999999999999999977655566666654
No 49
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.54 E-value=4.2e-14 Score=84.77 Aligned_cols=74 Identities=30% Similarity=0.533 Sum_probs=56.5
Q ss_pred EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
+.|.|.+.|.|.|.+.|++ ++..+... .........++.|.|.++..+|+|.|+|.|.|..|...+..+.|.|.
T Consensus 1 a~l~C~~~G~P~p~v~W~k-~~~~~~~~----~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~ 74 (74)
T cd05738 1 ATMLCAASGNPDPEITWFK-DFLPVDTT----SNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR 74 (74)
T ss_pred CEEEEEEeEecCCEEEEEE-CCEECccC----CCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence 4789999999999999999 44443211 11222333455799999999999999999999999777888888763
No 50
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.53 E-value=5.4e-14 Score=84.95 Aligned_cols=75 Identities=31% Similarity=0.486 Sum_probs=57.9
Q ss_pred CCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEE
Q psy7941 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH 232 (238)
Q Consensus 153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~ 232 (238)
|+.+.|.|.+.|.|.|.+.|++ ++..+..... ..........|.|.++..+|.|.|+|.|.|..|.. ...+.|.
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~-~g~~~~~~~~----~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~ 74 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRL-NGVPIEELPP----DPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYL-LANAFVH 74 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEE-CCEECCCCCC----cceEEccCCEEEECCCChhhCEEEEEEEEccCCeE-EEeEEEE
Confidence 6789999999999999999999 5554432111 11233445689999999999999999999999954 7777777
Q ss_pred E
Q psy7941 233 V 233 (238)
Q Consensus 233 V 233 (238)
|
T Consensus 75 V 75 (76)
T cd04978 75 V 75 (76)
T ss_pred E
Confidence 6
No 51
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.53 E-value=5.3e-14 Score=90.74 Aligned_cols=83 Identities=20% Similarity=0.417 Sum_probs=60.8
Q ss_pred CCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcce---EEEeeceEEEEEee-cCCCeEEEEEeeeCCCCCccc
Q psy7941 152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKV---FSVESEVLSLTKVT-RSEMGAYQCIAANGVPPTVSK 227 (238)
Q Consensus 152 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~-~~d~G~y~C~~~n~~g~~~~~ 227 (238)
.|..+.|.|.+.|.|.+.+.|++ ++..+.... ....... .....+.|.|.++. .+|.|.|+|.|.|..|.. ..
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k-~g~~l~~~~-~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~-~~ 98 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAK-NGVPLDLGN-PRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGED-SL 98 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEE-CCEECCCCC-CeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccC-cE
Confidence 56889999999999999999999 555443211 0000000 01113578999987 589999999999999955 89
Q ss_pred eEEEEEEeec
Q psy7941 228 RLMLHVHCTY 237 (238)
Q Consensus 228 ~~~l~V~~~p 237 (238)
++.|.|..+|
T Consensus 99 ~i~L~~~~~p 108 (109)
T cd05773 99 DIQLVSTSRP 108 (109)
T ss_pred EEEEEecCCC
Confidence 9999999887
No 52
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.53 E-value=7e-14 Score=83.63 Aligned_cols=73 Identities=27% Similarity=0.506 Sum_probs=56.1
Q ss_pred CCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEE
Q psy7941 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH 232 (238)
Q Consensus 153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~ 232 (238)
|+.+.|.|.+.|.|.|.++|++ ++..+... ........+.|.|.++..+|+|.|+|.|.|..|.. ..++.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k-~~~~~~~~------~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 72 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSK-GTELLTNS------SRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKA-NSTGSLS 72 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEE-CCEEcccC------CCEEECCCCeEEEccCChhHCEEEEEEEECCCCce-EEEEEEE
Confidence 6789999999999999999999 44443211 12223344579999999999999999999999944 6676665
Q ss_pred E
Q psy7941 233 V 233 (238)
Q Consensus 233 V 233 (238)
|
T Consensus 73 V 73 (73)
T cd04969 73 V 73 (73)
T ss_pred C
Confidence 4
No 53
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.53 E-value=1.1e-13 Score=86.26 Aligned_cols=82 Identities=27% Similarity=0.429 Sum_probs=60.4
Q ss_pred ceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCcc
Q psy7941 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVS 226 (238)
Q Consensus 147 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~ 226 (238)
...+.+|+.+.|.|.+.|.|.|.+.|+++ +..+.... ............|.|.++..+|.|.|+|.|.|..|.. .
T Consensus 9 ~~~v~~G~~v~l~C~~~G~P~p~v~W~~~-g~~~~~~~---~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~-~ 83 (90)
T cd04972 9 ATVVYEGGTATIRCTAEGSPLPKVEWIIA-GLIVIQTR---TDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQA-N 83 (90)
T ss_pred CEEEcCCCcEEEEEEEEEcCCCeEEEEEC-CEEccCCc---cEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCce-e
Confidence 45588999999999999999999999994 44332111 0001111234479999999999999999999999954 7
Q ss_pred ceEEEEE
Q psy7941 227 KRLMLHV 233 (238)
Q Consensus 227 ~~~~l~V 233 (238)
.++.|.|
T Consensus 84 ~~~~L~v 90 (90)
T cd04972 84 VSVQVTV 90 (90)
T ss_pred EEEEEeC
Confidence 7777654
No 54
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.53 E-value=2.9e-13 Score=84.77 Aligned_cols=74 Identities=27% Similarity=0.401 Sum_probs=55.6
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEE
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTH 94 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (238)
|+.+.+.+|+++.|.|.+. +.|.|.+.|+|++..+. ...++.+..
T Consensus 8 p~~v~v~~G~~v~L~C~v~--------------------------G~P~p~v~W~k~g~~l~---------~~~~~~~~~ 52 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVF--------------------------GDPDPEVSWLKNDQALA---------LSDHYNVKV 52 (92)
T ss_pred CceEEEeCCCcEEEEEEEE--------------------------ecCCCeEEEEECCEECc---------cCCCEEEEE
Confidence 5567899999999999985 35577899999876532 133444433
Q ss_pred cCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941 95 NDANTWTLNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
......+|.|.+++.+|+|.|+|.+.|..
T Consensus 53 ~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 81 (92)
T cd05737 53 EQGKYASLTIKGVSSEDSGKYGIVVKNKY 81 (92)
T ss_pred cCCCEEEEEEccCChhhCEEEEEEEEECC
Confidence 32334589999999999999999998853
No 55
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.52 E-value=3.2e-13 Score=84.62 Aligned_cols=82 Identities=24% Similarity=0.427 Sum_probs=63.2
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
.+|.|...+..+.+.+|+++.|.|.+. +.|.+.+.|++++..+. .
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~--------------------------g~P~p~v~W~k~g~~l~---------~ 46 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVD--------------------------GEPAPTVTWMREGQIIV---------S 46 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEe--------------------------ecCCCEEEEEECCEECC---------C
Confidence 478999999999999999999999985 35577899999865432 1
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
..++.+... ....+|.|.+++.+|+|.|.|.+.|..+
T Consensus 47 ~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~N~~G 83 (92)
T cd05747 47 SQRHQITST-EYKSTFEISKVQMSDEGNYTVVVENSEG 83 (92)
T ss_pred CCcEEEEEc-CCeeEEEECCCCcccCEeEEEEEEcCCC
Confidence 334444322 2234899999999999999999988543
No 56
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.52 E-value=8.1e-14 Score=83.85 Aligned_cols=74 Identities=28% Similarity=0.551 Sum_probs=54.1
Q ss_pred EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233 (238)
Q Consensus 156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V 233 (238)
+.|.|.+.|.|.|.++|++++........ .........+..|.|.++..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~---~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~-~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAAR---ERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGS-ISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCccc---ccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCE-EEeeEEEEE
Confidence 47899999999999999995543221110 111112233457999999999999999999999994 477777776
No 57
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.52 E-value=6.2e-14 Score=85.37 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=60.0
Q ss_pred CcEEEEEEEcc--ccCCeEEEEeCCCeeeEeecCCCCCcceEE----EeeceEEEEEeecCCCeEEEEEeeeCCCCCccc
Q psy7941 154 GSAKLVCKAKG--YPTPKITWRREDNKEIIVRSNPPSSQKVFS----VESEVLSLTKVTRSEMGAYQCIAANGVPPTVSK 227 (238)
Q Consensus 154 ~~~~l~C~~~~--~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~ 227 (238)
+++.|.|.+.+ .+.+.+.|++ ++.++.... ....... ...+.|.|.+++.+|+|.|+|.|.|..+ ..+.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~-dg~~i~~~~---~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~-~~~a 75 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSF-NGHLIDFQK---DGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVD-KLSA 75 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEE-CCEECcccC---CCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccC-ceEE
Confidence 36899999976 4577999999 666664211 1111222 2345899999999999999999999999 5599
Q ss_pred eEEEEEEeec
Q psy7941 228 RLMLHVHCTY 237 (238)
Q Consensus 228 ~~~l~V~~~p 237 (238)
+..|.|+.||
T Consensus 76 ~a~L~V~~pP 85 (85)
T cd05853 76 AADLIVRGPP 85 (85)
T ss_pred EEEEEEecCC
Confidence 9999999998
No 58
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.51 E-value=1.7e-13 Score=86.71 Aligned_cols=84 Identities=26% Similarity=0.500 Sum_probs=60.3
Q ss_pred ceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEE---EeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS---VESEVLSLTKVTRSEMGAYQCIAANGVPP 223 (238)
Q Consensus 147 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~n~~g~ 223 (238)
...+.+|+.+.|.|.+.|.|.|.+.|++++ ..+...... ....... .....|.|.++..+|.|.|+|.|.|..|.
T Consensus 10 ~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 87 (96)
T cd05732 10 NQTAVELEQITLTCEAEGDPIPEITWRRAT-RNFSEGDKS-LDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGG 87 (96)
T ss_pred ceeEecCCcEEEEEEEeEcCCCcEEEEECC-cccCCCCcc-ccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCC
Confidence 456788999999999999999999999944 332211100 0011111 12347999999999999999999999995
Q ss_pred CccceEEEEE
Q psy7941 224 TVSKRLMLHV 233 (238)
Q Consensus 224 ~~~~~~~l~V 233 (238)
. +.++.|.|
T Consensus 88 ~-~~s~~l~v 96 (96)
T cd05732 88 D-QQSMYLEV 96 (96)
T ss_pred c-EEEEEEeC
Confidence 4 77777764
No 59
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.51 E-value=3.5e-13 Score=85.98 Aligned_cols=87 Identities=32% Similarity=0.601 Sum_probs=59.9
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEE-----eecCCCeEEEEEeee
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTK-----VTRSEMGAYQCIAAN 219 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-----~~~~d~G~y~C~~~n 219 (238)
+....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+........ .......++.+.+.. +..+|+|.|+|.|.|
T Consensus 8 p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k-~g~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N 85 (100)
T cd07693 8 PSDLIVSKGDPATLNCKAEGRPTPTIQWLK-NGQPLETDKDDPR-SHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHN 85 (100)
T ss_pred CceeEEcCCCeEEEEeeCCcCCCCEEEEEE-CCEECccccCCCC-cceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEc
Confidence 445778899999999999999999999999 5554432111011 111122222333222 268899999999999
Q ss_pred CCCCCccceEEEEE
Q psy7941 220 GVPPTVSKRLMLHV 233 (238)
Q Consensus 220 ~~g~~~~~~~~l~V 233 (238)
..|...++.+.|.|
T Consensus 86 ~~G~~~s~~~~l~v 99 (100)
T cd07693 86 SLGEAVSRNASLEV 99 (100)
T ss_pred cccceecceEEEEe
Confidence 99976788888876
No 60
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.51 E-value=2.1e-13 Score=84.96 Aligned_cols=81 Identities=27% Similarity=0.453 Sum_probs=55.5
Q ss_pred CCcEEEEEEEccccCCeEEEEeCC---CeeeEeecCCC------CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941 153 GGSAKLVCKAKGYPTPKITWRRED---NKEIIVRSNPP------SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP 223 (238)
Q Consensus 153 g~~~~l~C~~~~~p~~~~~W~~~~---~~~~~~~~~~~------~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~ 223 (238)
|+.+.|.|.+.|.|.|.|+|++++ +..+....... ............|.|.++..+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 578999999999999999999952 11111000000 000001112347999999999999999999999995
Q ss_pred CccceEEEEEE
Q psy7941 224 TVSKRLMLHVH 234 (238)
Q Consensus 224 ~~~~~~~l~V~ 234 (238)
. .+++.|.|.
T Consensus 81 ~-~~sa~L~V~ 90 (90)
T cd04974 81 S-HHSAWLTVL 90 (90)
T ss_pred c-cCCEEEEeC
Confidence 4 778888873
No 61
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.51 E-value=2.6e-13 Score=85.61 Aligned_cols=84 Identities=32% Similarity=0.594 Sum_probs=61.9
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEe-----ecCCCeEEEEEeee
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKV-----TRSEMGAYQCIAAN 219 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~G~y~C~~~n 219 (238)
+....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.... ........++.+.+.++ ...|.|.|+|.|.|
T Consensus 6 P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k-~g~~l~~~~----~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N 80 (95)
T cd05722 6 PSDIVAVRGGPVVLNCSAEGEPPPKIEWKK-DGVLLNLVS----DERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQN 80 (95)
T ss_pred CCCeEEcCCCCEEEeeecccCCCCEEEEEE-CCeECcccc----CcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEEC
Confidence 344567789999999999999999999999 555443211 11122333456777766 57899999999999
Q ss_pred C-CCCCccceEEEEE
Q psy7941 220 G-VPPTVSKRLMLHV 233 (238)
Q Consensus 220 ~-~g~~~~~~~~l~V 233 (238)
. .|...++.+.|.|
T Consensus 81 ~~~G~~~s~~~~l~v 95 (95)
T cd05722 81 DSLGSIVSRTARLTV 95 (95)
T ss_pred CccCcEEEeeeEEeC
Confidence 9 9977788887765
No 62
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.51 E-value=9.8e-14 Score=82.32 Aligned_cols=70 Identities=27% Similarity=0.506 Sum_probs=53.9
Q ss_pred EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
+.|.|.+.|.|.|.+.|++ ++..+... .........|.|.++..+|+|.|+|.|.|..|. ..+++.+.|.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k-~g~~l~~~-------~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~-~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYK-NGKLISEK-------NRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAK-LEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEE-CCEECCCC-------CEEEcCCCEEEECcCCHHHCEEEEEEEEcCCcc-EEEEEEEEEE
Confidence 4689999999999999999 55554321 122344568999999999999999999999984 4666666653
No 63
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.51 E-value=4.5e-13 Score=84.93 Aligned_cols=95 Identities=19% Similarity=0.408 Sum_probs=63.2
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN 87 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 87 (238)
+|.+. .+.++.+.+|+++.|.|.+. +.|.|.++|++.......... ....+
T Consensus 2 ~p~i~-~~~~~~~~~G~~v~l~C~~~--------------------------G~P~p~i~W~k~~~g~~~~~~--~~~~~ 52 (98)
T cd05870 2 QPHII-QLKNETTVENGAATLSCKAE--------------------------GEPIPEITWKRASDGHTFSEG--DKSPD 52 (98)
T ss_pred CCEEE-eeccEEEcCCCcEEEEEecc--------------------------cCCCCeEEEEECCCCceeccC--CcCcC
Confidence 56665 46789999999999999985 456778999996422111100 00113
Q ss_pred ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEE
Q psy7941 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLE 132 (238)
Q Consensus 88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~ 132 (238)
.|+.+.. .....+|.|.+++.+|+|.|+|.+.|. +.....+.|+
T Consensus 53 ~r~~v~~-~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 97 (98)
T cd05870 53 GRIEVKG-QHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD 97 (98)
T ss_pred ceEEEee-cCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEEe
Confidence 4555432 123458999999999999999999876 4444444454
No 64
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.50 E-value=1.7e-13 Score=84.59 Aligned_cols=82 Identities=26% Similarity=0.464 Sum_probs=59.9
Q ss_pred eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccc
Q psy7941 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSK 227 (238)
Q Consensus 148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~ 227 (238)
..+..|+.+.|.|.+.|.|.|.+.|++ ++..+..... ............|.|..+..+|+|.|+|.|.|..|. ...
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k-~g~~l~~~~~--~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~-~~~ 79 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLK-NGKEFKQEHR--IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-INH 79 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEE-CCEECCCCCc--eeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCE-EEE
Confidence 357789999999999999999999999 5544432110 001111122346889999999999999999999994 477
Q ss_pred eEEEEE
Q psy7941 228 RLMLHV 233 (238)
Q Consensus 228 ~~~l~V 233 (238)
++.|.|
T Consensus 80 ~~~l~v 85 (85)
T cd05857 80 TYHLDV 85 (85)
T ss_pred EEEEEC
Confidence 777765
No 65
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.50 E-value=7.4e-13 Score=83.13 Aligned_cols=86 Identities=24% Similarity=0.426 Sum_probs=57.7
Q ss_pred ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCC-CceEEEEeCCceeeeeeeeeEeecCccEE
Q psy7941 13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSS-AMKVAWIKADTKAVLAIHEHVITNNARLS 91 (238)
Q Consensus 13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 91 (238)
..|....+..|+++.|.|.+.. .| +|.++|++.++..... ...++.
T Consensus 5 ~~p~~~~v~~G~~v~l~C~v~G--------------------------~P~~p~i~W~~~~g~~l~~-------~~~r~~ 51 (96)
T cd05865 5 IVPSQGEISVGESKFFLCQVAG--------------------------EAKDKDISWFSPNGEKLTP-------NQQRIS 51 (96)
T ss_pred EeCCccEECCCCeEEEEEEEeC--------------------------CCCCCEEEEECCCCcCccc-------cCCeEE
Confidence 4566667899999999999953 44 3589999844432211 122444
Q ss_pred EEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEE
Q psy7941 92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFL 131 (238)
Q Consensus 92 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l 131 (238)
+........+|.|.+++.+|+|.|+|.+.|.......+.+
T Consensus 52 v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~ 91 (96)
T cd05865 52 VVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATV 91 (96)
T ss_pred EEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEE
Confidence 3333333458999999999999999999886433333333
No 66
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.50 E-value=2.9e-13 Score=80.88 Aligned_cols=66 Identities=21% Similarity=0.388 Sum_probs=46.7
Q ss_pred cCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEE
Q psy7941 59 TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLE 132 (238)
Q Consensus 59 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~ 132 (238)
.+.|.|.+.|+|++..+.. ...|+.+.....+..+|.|.+++.+|+|.|+|.+.|. +.....+.|.
T Consensus 8 ~G~P~P~i~W~k~~~~i~~--------~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05892 8 SAIPPPKIFWKRNNEMVQY--------NTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLD 74 (75)
T ss_pred EecCCCeEEEEECCEECcC--------CCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEe
Confidence 3567889999998765421 1345665554445568999999999999999999886 3344455554
No 67
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.50 E-value=2.1e-13 Score=85.25 Aligned_cols=82 Identities=17% Similarity=0.396 Sum_probs=60.2
Q ss_pred CceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEE---eeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV---ESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
....+..|+.+.|.|.+.|.| +.+.|++.++..+.... ...... ..+.|.|.++..+|+|.|+|.|.|..|
T Consensus 8 ~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~-----~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g 81 (92)
T cd04977 8 SQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQ-----QISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKG 81 (92)
T ss_pred CcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCC-----CEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCC
Confidence 346688899999999999987 49999985554443211 111111 224799999999999999999999987
Q ss_pred CCccceEEEEE
Q psy7941 223 PTVSKRLMLHV 233 (238)
Q Consensus 223 ~~~~~~~~l~V 233 (238)
....+++.|+|
T Consensus 82 ~~~~~sv~l~~ 92 (92)
T cd04977 82 TESEATVNLKI 92 (92)
T ss_pred CcceeEEEEEC
Confidence 56677877764
No 68
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.50 E-value=5e-13 Score=83.04 Aligned_cols=86 Identities=17% Similarity=0.300 Sum_probs=61.5
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN 87 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 87 (238)
+|.+...+..+.+.+|+++.|.|.+. +.|.|.+.|++++..... .
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~--------------------------g~P~p~v~W~k~~~~~~~---------~ 45 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFAL--------------------------GNPVPQIKWRKVDGSMPS---------S 45 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEee--------------------------EeCCCEEEEEECCCcCCC---------c
Confidence 34566778888999999999999985 345778999997764321 1
Q ss_pred ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEE
Q psy7941 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEV 133 (238)
Q Consensus 88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 133 (238)
...... ...|.|.+++.+|+|.|.|.+.|. +.....+.|.|
T Consensus 46 ~~~~~~-----~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 87 (88)
T cd04968 46 AEISMS-----GAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYV 87 (88)
T ss_pred cEEEEe-----CCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEE
Confidence 111111 128999999999999999999875 33444555554
No 69
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.49 E-value=2.1e-13 Score=85.56 Aligned_cols=74 Identities=28% Similarity=0.555 Sum_probs=55.7
Q ss_pred CCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEee-cCCCeEEEEEeeeCCCCCccceEE
Q psy7941 152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT-RSEMGAYQCIAANGVPPTVSKRLM 230 (238)
Q Consensus 152 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~n~~g~~~~~~~~ 230 (238)
+|+.+.|.|.+.|.|.|.++|++ ++..+.... .......++.|.|.++. .+|.|.|+|.|.|..|...++.+.
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k-~g~~l~~~~-----~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~ 91 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLR-NGTEIDTES-----DYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREAL 91 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEE-CCeECccCC-----CceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEE
Confidence 47899999999999999999999 555543211 11223345678888875 699999999999999977666665
Q ss_pred E
Q psy7941 231 L 231 (238)
Q Consensus 231 l 231 (238)
|
T Consensus 92 l 92 (94)
T cd05848 92 L 92 (94)
T ss_pred E
Confidence 4
No 70
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.49 E-value=1.4e-13 Score=82.65 Aligned_cols=74 Identities=27% Similarity=0.412 Sum_probs=53.4
Q ss_pred cEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941 155 SAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233 (238)
Q Consensus 155 ~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V 233 (238)
.+.|.|.+.|.|.|.+.|++ ++..+.... ............|.|.++..+|+|.|+|.|.|..|. .+.++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k-~g~~l~~~~---~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSK-DGKPLKLSG---RVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGE-KSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEE-CCEEcCCCC---eEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCcc-EEEEEEEEC
Confidence 36899999999999999999 454442110 000111112457999999999999999999999994 477777654
No 71
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.49 E-value=1.2e-13 Score=81.63 Aligned_cols=69 Identities=28% Similarity=0.538 Sum_probs=52.5
Q ss_pred EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233 (238)
Q Consensus 156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V 233 (238)
+.|.|.+.|.|.|.+.|+++++. +.. ..........|.|.++..+|+|.|+|.|.|..|.. ..++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~-~~~-------~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGE-LPK-------GRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKI-EASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCcc-CCC-------CcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcE-EEEEEEEC
Confidence 47899999999999999995432 211 11222355689999999999999999999999944 66666654
No 72
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.49 E-value=1.8e-13 Score=82.16 Aligned_cols=72 Identities=21% Similarity=0.415 Sum_probs=52.0
Q ss_pred EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe---eceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEE
Q psy7941 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE---SEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH 232 (238)
Q Consensus 156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~ 232 (238)
+.|.|.+.|.|.|.+.|++ ++..+.... ........ ...|.|.++..+|+|.|+|.|.|..|.. +.++.|.
T Consensus 1 v~L~C~v~G~P~P~v~W~k-~~~~i~~~~----~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 74 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKK-NNEMLTYNT----DRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVV-SCNARLD 74 (75)
T ss_pred CEEEEEEeecCCCeEEEEE-CCEECCCCC----CcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcE-EEEEEEe
Confidence 4799999999999999999 555443211 11111111 1269999999999999999999999944 6666665
Q ss_pred E
Q psy7941 233 V 233 (238)
Q Consensus 233 V 233 (238)
|
T Consensus 75 v 75 (75)
T cd05744 75 V 75 (75)
T ss_pred C
Confidence 4
No 73
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.49 E-value=4.1e-13 Score=84.28 Aligned_cols=73 Identities=23% Similarity=0.473 Sum_probs=54.5
Q ss_pred CCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEee-cCCCeEEEEEeeeCCCCCccceEEE
Q psy7941 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT-RSEMGAYQCIAANGVPPTVSKRLML 231 (238)
Q Consensus 153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~n~~g~~~~~~~~l 231 (238)
|+.+.|.|.+.|.|.|.++|++ ++..+.... .......++.|.|.++. .+|.|.|.|.|.|..|...++.+.|
T Consensus 19 g~~v~l~C~a~g~P~p~i~W~~-~g~~l~~~~-----~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 19 EEKVTLGCRARASPPATYRWKM-NGTEIKFAP-----ESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANL 92 (94)
T ss_pred CCeEEEEeEceeCCCCEEEEEE-CCEECccCC-----CceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence 4689999999999999999999 555443211 11122345678887765 5899999999999999776776665
No 74
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.49 E-value=2.7e-13 Score=84.94 Aligned_cols=82 Identities=26% Similarity=0.482 Sum_probs=60.0
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
+....+..|+.+.|.|.+.|.|.|.+.|++ ++..+.... ..........+.|.|.++..+|.|.|+|.|.|..|.
T Consensus 10 p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k-~g~~l~~~~---~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~- 84 (92)
T cd05747 10 PRSLTVSEGESARFSCDVDGEPAPTVTWMR-EGQIIVSSQ---RHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGK- 84 (92)
T ss_pred CccEEEeCCCcEEEEEEEeecCCCEEEEEE-CCEECCCCC---cEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCC-
Confidence 456788999999999999999999999999 454432110 001111112357999999999999999999999994
Q ss_pred ccceEEE
Q psy7941 225 VSKRLML 231 (238)
Q Consensus 225 ~~~~~~l 231 (238)
.+.++.|
T Consensus 85 ~~~~~~l 91 (92)
T cd05747 85 QEAQFTL 91 (92)
T ss_pred EeEEEEe
Confidence 3665554
No 75
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.49 E-value=2.7e-13 Score=81.89 Aligned_cols=74 Identities=24% Similarity=0.441 Sum_probs=54.0
Q ss_pred EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCc-cceEEEEEE
Q psy7941 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTV-SKRLMLHVH 234 (238)
Q Consensus 156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~-~~~~~l~V~ 234 (238)
+.|.|.+.|.|.|.+.|++ ++..+.... ...........|.|.++..+|+|.|.|.|.|..|... +..+.|.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k-~g~~l~~~~----~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFR-DGTPLSDGQ----GNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEEeeecCCCcEEEEE-CCEECCCCC----ccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 4799999999999999999 555442211 1111222345799999999999999999999999543 456777664
No 76
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.49 E-value=3.6e-13 Score=84.17 Aligned_cols=83 Identities=20% Similarity=0.368 Sum_probs=59.7
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEE--eeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV--ESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
+..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+.... ....... ....|.|.++..+|+|.|+|.|.|..|
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~-~~~~~~~~----~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G 82 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKN-DQDIELSE----HYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYG 82 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCeEEEEEC-CEECCCCC----CEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCC
Confidence 4557789999999999999999999999994 44332110 0011111 113699999999999999999999999
Q ss_pred CCccceEEEEE
Q psy7941 223 PTVSKRLMLHV 233 (238)
Q Consensus 223 ~~~~~~~~l~V 233 (238)
.. ..++.|.|
T Consensus 83 ~~-~~~~~v~~ 92 (92)
T cd05891 83 GE-TVDVTVSV 92 (92)
T ss_pred ce-eeEEEEEC
Confidence 43 56655543
No 77
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.48 E-value=3e-13 Score=82.77 Aligned_cols=79 Identities=25% Similarity=0.490 Sum_probs=55.9
Q ss_pred CCcEEEEEEEccccCCeEEEEeCCC--eeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEE
Q psy7941 153 GGSAKLVCKAKGYPTPKITWRREDN--KEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLM 230 (238)
Q Consensus 153 g~~~~l~C~~~~~p~~~~~W~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~ 230 (238)
|+.+.|.|.+.|.|.|.+.|+++.. ....... ..............|.|.++..+|+|.|+|.|.|..|. ....+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~ 78 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRP-NHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGL-LRANFP 78 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecC-CcccCCEEEccccEEEEccCCcccCEEEEEEEecCCce-EEEEEE
Confidence 6789999999999999999999531 1111111 00111122233457999999999999999999999995 477777
Q ss_pred EEE
Q psy7941 231 LHV 233 (238)
Q Consensus 231 l~V 233 (238)
|.|
T Consensus 79 l~v 81 (81)
T cd05765 79 LSV 81 (81)
T ss_pred EeC
Confidence 764
No 78
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.48 E-value=1.8e-13 Score=80.56 Aligned_cols=67 Identities=22% Similarity=0.492 Sum_probs=50.1
Q ss_pred EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEE
Q psy7941 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH 232 (238)
Q Consensus 156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~ 232 (238)
+.|.|.+.|.|.|.+.|++ ++.++... . ....+..|.|.++..+|+|.|+|.|.|..|.. ....++.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k-~g~~l~~~------~--~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~-~~~~t~~ 67 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYK-NGQLIVLN------H--TFKRGVHLTIYEVTEKDAGNYTVVLTNPITKE-EQRHTFQ 67 (70)
T ss_pred CEEEeEEEEeCCCEEEEEE-CCEECCCC------C--EEccCCEEEECcCCHHHCEEEEEEEEECCCce-eeEEEEE
Confidence 3689999999999999999 55555321 1 11234579999999999999999999999944 3433333
No 79
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.48 E-value=1.9e-13 Score=83.89 Aligned_cols=79 Identities=27% Similarity=0.490 Sum_probs=58.0
Q ss_pred eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccc
Q psy7941 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSK 227 (238)
Q Consensus 148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~ 227 (238)
+....|+.+.|.|.+.|.|.|.+.|++++ ..+.... ..........|.|.++..+|+|.|+|.+.|..|. ...
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~-~~~~~~~-----~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~ 76 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDN-KPLTPTE-----IGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGE-INA 76 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECC-cCCcCCc-----cceecCceEEEEEccCChhhCEEEEEEEEcCCcc-EEE
Confidence 34567999999999999999999999944 3332111 0111122347999999999999999999999994 467
Q ss_pred eEEEEE
Q psy7941 228 RLMLHV 233 (238)
Q Consensus 228 ~~~l~V 233 (238)
++.|.|
T Consensus 77 ~~~v~v 82 (82)
T cd05856 77 TYKVDV 82 (82)
T ss_pred EEEEeC
Confidence 766654
No 80
>PHA03376 BARF1; Provisional
Probab=99.48 E-value=5.1e-12 Score=85.79 Aligned_cols=138 Identities=17% Similarity=0.367 Sum_probs=84.7
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC---ceeeee-ee----eeEeec
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD---TKAVLA-IH----EHVITN 86 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~---~~~~~~-~~----~~~~~~ 86 (238)
...+.+..|+.+.|+|..+-.. ..+.+.|+|+|.+ .+.... .+ ..+..+
T Consensus 18 g~pVta~VGEda~LsC~lnp~s-----------------------sa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEy 74 (221)
T PHA03376 18 GQAVTAFLGERVTLTSYWRRVS-----------------------LGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPF 74 (221)
T ss_pred CcchhheeCCcEEEEecccCcc-----------------------CCCceEEEEEecCCCCCCEEEEEcCCeeeeeeecc
Confidence 3467889999999999986221 1135679999952 222221 11 112345
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccc
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY 165 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~ 165 (238)
++++.+.... ++++|.|.+++.+|.|.|+|.++.... ......|.+..|-.+.+...-++ ....+...+.|.+.|+
T Consensus 75 RGrtD~~~~~-gnvsLvI~~l~lSDdGtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~d--Fp~~~~~~i~C~sggf 151 (221)
T PHA03376 75 RGFFDIHRSA-NTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQ--FPDFSVLTVTCTVNAF 151 (221)
T ss_pred ccEEEEEecC-CeEEEEEEeeeecCCceEEEEEEcCCCceeeeeeeeeeecceEEEEecccc--CCCCCeeEEEEecCCc
Confidence 6677665544 788999999999999999999976433 22222333322111111110000 1114556889998789
Q ss_pred cCCeEEEEeCCCe
Q psy7941 166 PTPKITWRREDNK 178 (238)
Q Consensus 166 p~~~~~W~~~~~~ 178 (238)
|.|.++|..+.+.
T Consensus 152 P~P~~~Wle~~~~ 164 (221)
T PHA03376 152 PHPHVQWLMPEGV 164 (221)
T ss_pred CCchheeccccCC
Confidence 9999999986553
No 81
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.48 E-value=2.7e-13 Score=84.70 Aligned_cols=84 Identities=30% Similarity=0.548 Sum_probs=64.0
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
+..+.+..|+.+.|.|.+.+.|.+.+.|++ ++..+.... ............|.|.++..+|.|.|+|.+.|..|..
T Consensus 7 ~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~-~~~~l~~~~---~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~ 82 (90)
T PF07679_consen 7 PKDVTVKEGESVTLECEVSGNPPPTVTWYK-NGRPLTSSQ---RYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEA 82 (90)
T ss_dssp SSEEEEETTSEEEEEEEEEESSSSEEEEEE-TTEEEESSS---SEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEE
T ss_pred cCCEEEeCCCEEEEEEEEEeCCCCcccccc-cccceeeee---eeeeecccceeEEccCCCChhhCEEEEEEEEECCCEE
Confidence 456778999999999999999999999999 565554311 1111112245589999999999999999999998844
Q ss_pred ccceEEEEE
Q psy7941 225 VSKRLMLHV 233 (238)
Q Consensus 225 ~~~~~~l~V 233 (238)
+..+.|.|
T Consensus 83 -~~~~~l~V 90 (90)
T PF07679_consen 83 -TASVNLTV 90 (90)
T ss_dssp -EEEEEEEE
T ss_pred -EEEEEEEC
Confidence 77777765
No 82
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.48 E-value=1.1e-13 Score=82.41 Aligned_cols=70 Identities=27% Similarity=0.560 Sum_probs=52.9
Q ss_pred EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233 (238)
Q Consensus 156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V 233 (238)
+.|.|.+.|.|.|.+.|+++++ .+... ..........|.|.++..+|.|.|+|.|.|..| ..++++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~-~~~~~------~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G-~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGG-ELPAD------RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLG-SARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCe-ECCCC------ceeEecCCCEEEECCCCHHHCEEEEEEEEeCCc-eEEEEEEEEE
Confidence 4789999999999999999543 22110 111222345799999999999999999999999 4477887776
No 83
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.47 E-value=5.1e-13 Score=82.32 Aligned_cols=74 Identities=18% Similarity=0.377 Sum_probs=56.9
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccE
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARL 90 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 90 (238)
|...|.+..+..|+++.|.|.+. +.|.|.+.|++++..+. ...++
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~--------------------------g~p~p~v~W~k~g~~~~---------~~~~~ 46 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKAS--------------------------GNPRPAYRWLKNGQPLA---------SENRI 46 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEee--------------------------EeCCCEEEEEECCEECC---------CCCeE
Confidence 56678889999999999999986 34577899999876532 12334
Q ss_pred EEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 91 SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 91 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
..... .|.|.++..+|+|.|+|.+.|...
T Consensus 47 ~~~~~-----~L~i~~~~~~D~G~Y~C~a~N~~G 75 (85)
T cd05728 47 EVEAG-----DLRITKLSLSDSGMYQCVAENKHG 75 (85)
T ss_pred EEeCC-----EEEEeeCCHHHCEEEEEEEECCCC
Confidence 33222 899999999999999999988643
No 84
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.47 E-value=4.3e-13 Score=83.61 Aligned_cols=80 Identities=28% Similarity=0.438 Sum_probs=55.0
Q ss_pred CCcEEEEEEEccccCCeEEEEeCC---CeeeEeecCCC----CCc--ceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941 153 GGSAKLVCKAKGYPTPKITWRRED---NKEIIVRSNPP----SSQ--KVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP 223 (238)
Q Consensus 153 g~~~~l~C~~~~~p~~~~~W~~~~---~~~~~~~~~~~----~~~--~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~ 223 (238)
|+.+.|.|.+.|.|.|.+.|++++ +..+....... ... .......+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 678999999999999999999842 22221110000 000 000011247999999999999999999999995
Q ss_pred CccceEEEEE
Q psy7941 224 TVSKRLMLHV 233 (238)
Q Consensus 224 ~~~~~~~l~V 233 (238)
.++++.|.|
T Consensus 81 -~~~~a~L~V 89 (90)
T cd05858 81 -SHHSAWLTV 89 (90)
T ss_pred -ccceEEEEE
Confidence 478888877
No 85
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.47 E-value=4.3e-13 Score=81.31 Aligned_cols=75 Identities=24% Similarity=0.385 Sum_probs=56.3
Q ss_pred CCceeecCCCcEEEEEEEccccCC-eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP 223 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~ 223 (238)
+.++.+..|+.+.|.|.+.|.|.| .|.|++ ++.++... .....+.|.|..+ .|.|.|.|.|.|..|.
T Consensus 5 P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k-~g~~l~~~---------~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~ 72 (81)
T cd05749 5 PEDLSVTANTPFNLTCQAVGPPEPVEILWWQ-GGSPLGDP---------PAPSPSVLNVPGL--NETSKFSCEAHNAKGV 72 (81)
T ss_pred CCceEEcCCCCEEEEEEeeeecCCeEEEEEE-CCEECCCC---------CCCCCCEEEEccc--cCCeEEEEEEEeccCc
Confidence 455778999999999999999999 799999 55544210 0122346777766 4789999999999997
Q ss_pred CccceEEE
Q psy7941 224 TVSKRLML 231 (238)
Q Consensus 224 ~~~~~~~l 231 (238)
..++.+.|
T Consensus 73 ~~s~~a~~ 80 (81)
T cd05749 73 TTSRTGTV 80 (81)
T ss_pred EEeeeEEe
Confidence 66666554
No 86
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.47 E-value=1.9e-13 Score=82.01 Aligned_cols=74 Identities=19% Similarity=0.219 Sum_probs=51.2
Q ss_pred EEEEEEccccCCeEEEEeCCCeeeEeecCCCCC--cceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEE
Q psy7941 157 KLVCKAKGYPTPKITWRREDNKEIIVRSNPPSS--QKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH 232 (238)
Q Consensus 157 ~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~ 232 (238)
.+.|.+.|.|.|.++|++ ++..+......... ........+.|.|.++..+|+|.|+|.|+|..|+. ++++.+.
T Consensus 2 ~i~~~v~G~P~Pti~W~k-ng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~-~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFH-EGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGED-EKNVSAH 77 (79)
T ss_pred eEEEEEeEeCCCceEEEE-CCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCccc-ceEEEee
Confidence 368999999999999999 66555322110000 00001123479999999999999999999999954 6766554
No 87
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.47 E-value=6.2e-13 Score=83.11 Aligned_cols=73 Identities=25% Similarity=0.478 Sum_probs=54.7
Q ss_pred CCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEee-cCCCeEEEEEeeeCCCCCccceEEE
Q psy7941 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT-RSEMGAYQCIAANGVPPTVSKRLML 231 (238)
Q Consensus 153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~n~~g~~~~~~~~l 231 (238)
+..+.|.|.+.|.|.|.++|++ ++..+... .. .....++.|.|.++. .+|+|.|.|.|.|..|...++.+.|
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k-~~~~i~~~-----~~-~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRK-NNLDIDLT-----ND-RYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEE-CCEEccCC-----CC-eEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence 4579999999999999999999 44443211 11 123345689998875 5899999999999999776766665
Q ss_pred E
Q psy7941 232 H 232 (238)
Q Consensus 232 ~ 232 (238)
.
T Consensus 92 ~ 92 (93)
T cd05849 92 S 92 (93)
T ss_pred e
Confidence 3
No 88
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.46 E-value=1.6e-13 Score=81.10 Aligned_cols=68 Identities=28% Similarity=0.575 Sum_probs=51.6
Q ss_pred EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEE
Q psy7941 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLML 231 (238)
Q Consensus 156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l 231 (238)
+.|.|.+.|.|.|.+.|++ ++..+... ........+.|.|.++..+|.|.|+|.|.|..|.. +.++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k-~g~~~~~~------~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNK-DGVQVTES------GKFHISPEGYLAIRDVGVADQGRYECVARNTIGYA-SVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEE-CCEECCCC------CCEEECCCCEEEECcCChhhCEEEEEEEECCCCcE-EEEEEe
Confidence 4799999999999999999 55444211 12223335689999999999999999999999954 666554
No 89
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.46 E-value=1.5e-12 Score=82.46 Aligned_cols=90 Identities=10% Similarity=0.134 Sum_probs=57.9
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEE
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTH 94 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (238)
...+.+.+|+++.|.|.+.. ..|+|.+.|+|++..+... ....+..... .
T Consensus 10 ~~~~~v~~G~~v~L~c~v~g-------------------------~~P~p~v~W~Kdg~~i~~~-~~~~~~~~~~----~ 59 (101)
T cd04975 10 NTTIFVNLGENLNLVVEVEA-------------------------YPPPPHINWTYDNRTLTNK-LTEIVTSENE----S 59 (101)
T ss_pred CceEEEECCCCEEEEEEEEe-------------------------cCCCCccEEEeCCeeCCCC-cceeEEEecc----C
Confidence 35778999999999999962 1457789999987654321 1111110000 0
Q ss_pred cCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEE
Q psy7941 95 NDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVV 134 (238)
Q Consensus 95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~ 134 (238)
......+|.|.++..+|+|.|+|.+.|..+ ....+.|.|.
T Consensus 60 ~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L~V~ 100 (101)
T cd04975 60 EYRYVSELKLVRLKESEAGTYTFLASNSDASKSLTFELYVN 100 (101)
T ss_pred cceEEEEEEEeecCHhhCeeEEEEEECCCccEEEEEEEEEE
Confidence 001123899999999999999999988643 3444455554
No 90
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.45 E-value=1.7e-12 Score=82.08 Aligned_cols=94 Identities=17% Similarity=0.357 Sum_probs=62.2
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN 87 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 87 (238)
.|.|...+....+..|+++.|.|.+. +.|.|.++|++++........ ...
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~--------------------------G~P~P~v~W~~~~~~~~~~~~----~~~ 51 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEAS--------------------------GDPIPSITWRTSTRNISSEEK----TLD 51 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEee--------------------------EeCCCEEEEEECCccccCCcc----ccC
Confidence 67887776666666789999999985 345788999997644221100 012
Q ss_pred ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEE
Q psy7941 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLE 132 (238)
Q Consensus 88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~ 132 (238)
+++.+.. ......|.|.+++.+|+|.|+|.+.|.. .....+.|.
T Consensus 52 ~~~~v~~-~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 96 (97)
T cd05869 52 GHIVVRS-HARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLE 96 (97)
T ss_pred ccEEEEc-CccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEEE
Confidence 2333222 1223489999999999999999998863 344444444
No 91
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.45 E-value=7.6e-13 Score=78.77 Aligned_cols=71 Identities=27% Similarity=0.492 Sum_probs=51.0
Q ss_pred cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEE
Q psy7941 23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTL 102 (238)
Q Consensus 23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 102 (238)
|+++.|.|.+. +.|.|.+.|+|++..+. ...++.+.... +|
T Consensus 1 G~~~~l~C~~~--------------------------g~P~p~v~W~k~~~~l~---------~~~r~~~~~~g----~L 41 (73)
T cd05852 1 GGRVIIECKPK--------------------------AAPKPKFSWSKGTELLV---------NNSRISIWDDG----SL 41 (73)
T ss_pred CCeEEEEEecc--------------------------eeCCCEEEEEeCCEecc---------cCCCEEEcCCC----EE
Confidence 67899999985 45678899999765432 23455543322 89
Q ss_pred EEcccCcccCeEEEEEEecC-CCcceeeEEE
Q psy7941 103 NIRSVRREDRGYYMCQVNTN-PMTKQMAFLE 132 (238)
Q Consensus 103 ~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~ 132 (238)
.|.+++.+|+|.|+|.+.|. +.....+.|.
T Consensus 42 ~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 72 (73)
T cd05852 42 EILNITKLDEGSYTCFAENNRGKANSTGVLS 72 (73)
T ss_pred EECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence 99999999999999999886 3344444444
No 92
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.45 E-value=4.4e-13 Score=80.92 Aligned_cols=72 Identities=25% Similarity=0.525 Sum_probs=51.6
Q ss_pred EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeec----CCCeEEEEEeeeCCCCCccceEEE
Q psy7941 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTR----SEMGAYQCIAANGVPPTVSKRLML 231 (238)
Q Consensus 156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~y~C~~~n~~g~~~~~~~~l 231 (238)
+.|.|.+.|.|.|.++|++ ++..+.... ..........+.|.|..+.. +|+|.|+|.|.|..|...++.+.|
T Consensus 1 i~l~C~~~G~P~P~v~W~k-~g~~l~~~~---~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l 76 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTR-NGTHFDPEK---DPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL 76 (77)
T ss_pred CEEEeeCcccCCCeEEEEE-CCeECCCCC---CCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence 4789999999999999999 554442211 11122223456888888754 689999999999999776766654
No 93
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.45 E-value=1.1e-12 Score=78.52 Aligned_cols=66 Identities=20% Similarity=0.376 Sum_probs=45.7
Q ss_pred cCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEE
Q psy7941 59 TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLE 132 (238)
Q Consensus 59 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~ 132 (238)
.+.|.|.+.|+|++..+.. ...++.+.....+..+|.|.+++.+|+|.|+|.+.|.. .....+.|.
T Consensus 8 ~G~P~P~v~W~k~~~~l~~--------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05893 8 SGVPHPQIFWKKENESLTH--------NTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLD 74 (75)
T ss_pred eEecCCEEEEEECCEECCC--------CCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEe
Confidence 3567889999998765421 13455554443344479999999999999999998863 344455554
No 94
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.44 E-value=1e-12 Score=79.73 Aligned_cols=76 Identities=13% Similarity=0.360 Sum_probs=56.4
Q ss_pred ceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCcc
Q psy7941 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVS 226 (238)
Q Consensus 147 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~ 226 (238)
...+.+|+.+.|.|.+.+. .+.+.|++ ++.++... .. ....+..|.|.++..+|+|.|+|.|.|..|.. .
T Consensus 3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k-~g~~l~~~------~~-~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~-~ 72 (79)
T cd04973 3 SYSAHPGDLLQLRCRLRDD-VQSINWTK-DGVQLGEN------NR-TRITGEEVQIKDAVPRDSGLYACVTSSPSGSD-T 72 (79)
T ss_pred cEEecCCCCEEEEEEecCC-CceEEEee-CCcCCCCC------ce-EEEeCCEEEECCCChhhCEEEEEEEeCCCCcc-c
Confidence 3567889999999999885 56899999 55554321 11 12234579999999999999999999999843 5
Q ss_pred ceEEEE
Q psy7941 227 KRLMLH 232 (238)
Q Consensus 227 ~~~~l~ 232 (238)
..+.|.
T Consensus 73 ~~~~v~ 78 (79)
T cd04973 73 TYFSVN 78 (79)
T ss_pred EEEEEe
Confidence 555444
No 95
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.44 E-value=7.4e-13 Score=77.96 Aligned_cols=68 Identities=29% Similarity=0.600 Sum_probs=48.4
Q ss_pred CCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEE
Q psy7941 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLML 231 (238)
Q Consensus 153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l 231 (238)
|+.+.|.|.+.|.|.|.+.|+++ +..+.... . .......|.|.++ .|+|.|+|.|.|..|. ...++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~-g~~l~~~~------~-~~~~~~~L~i~~~--~d~G~Y~C~A~N~~G~-~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKG-GEELTKED------E-MPVGRNVLELTNI--YESANYTCVAISSLGM-IEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEEC-CEECCCcc------c-eecCccEEEEecc--ccCeeEEEEEEeCCCE-EEEEEEE
Confidence 57899999999999999999994 44432111 1 1123346888776 4799999999999994 3555544
No 96
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.44 E-value=2.1e-12 Score=81.47 Aligned_cols=89 Identities=17% Similarity=0.276 Sum_probs=60.2
Q ss_pred cceecc--CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 9 PDFLYP--LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 9 p~~~~~--~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
|.|... +..+.+..|+++.|.|.+. +.|.|.+.|++++..+...
T Consensus 2 p~i~~~~~~~~~~~~~G~~v~L~C~~~--------------------------g~P~p~v~W~k~g~~~~~~-------- 47 (95)
T cd05730 2 PTIRARQSEVNATANLGQSVTLACDAD--------------------------GFPEPTMTWTKDGEPIESG-------- 47 (95)
T ss_pred CccccCCcccceEEeCCCCEEEEEecc--------------------------EeCCCEEEEEECCEECcCC--------
Confidence 444433 3456789999999999985 3457889999977643211
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEE
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVV 134 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~ 134 (238)
..++..... ...|.|.+++.+|.|.|+|.+.|.. .....+.|.|.
T Consensus 48 ~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 93 (95)
T cd05730 48 EEKYSFNED---GSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVF 93 (95)
T ss_pred CCEEEEeCC---CCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEE
Confidence 122222211 1279999999999999999998864 34555556654
No 97
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.44 E-value=2.3e-12 Score=80.57 Aligned_cols=84 Identities=27% Similarity=0.369 Sum_probs=58.1
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEE
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT 93 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (238)
.|..+.+.+|+++.|.|.+. +.|.+.+.|++++..+.. ..++...
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~--------------------------g~P~p~i~W~k~~~~~~~---------~~~~~~~ 51 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVF--------------------------GNPDPEVIWFKNDQDIEL---------SEHYSVK 51 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEE--------------------------EeCCCeEEEEECCEECCC---------CCCEEEE
Confidence 45678899999999999985 345678999998765321 2333333
Q ss_pred EcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEE
Q psy7941 94 HNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV 133 (238)
Q Consensus 94 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v 133 (238)
.......+|.|.+++.+|+|.|+|.+.|... ...+.+.|
T Consensus 52 ~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G-~~~~~~~v 90 (92)
T cd05891 52 LEQGKYASLTIKGVTSEDSGKYSINVKNKYG-GETVDVTV 90 (92)
T ss_pred EcCCCEEEEEECCCChhhCEEEEEEEEeCCC-ceeeEEEE
Confidence 2222334899999999999999999987532 33334443
No 98
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.44 E-value=3.1e-13 Score=79.72 Aligned_cols=69 Identities=20% Similarity=0.363 Sum_probs=49.7
Q ss_pred EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC-CCccceEEE
Q psy7941 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP-PTVSKRLML 231 (238)
Q Consensus 156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g-~~~~~~~~l 231 (238)
+.|.|.+.|.|.|.+.|++ ++.++.... ......+..|.|.++..+|+|.|+|.|.|... ......++|
T Consensus 1 ~~l~c~v~g~P~P~v~W~k-dg~~l~~~~------~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLK-DGLPAAEKC------SRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred CeEEeeEEEcCCCeEEEEE-CCEECCCCC------cEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence 3689999999999999999 554442210 11223445899999999999999999999864 333444444
No 99
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.44 E-value=2.2e-12 Score=79.50 Aligned_cols=74 Identities=19% Similarity=0.327 Sum_probs=55.1
Q ss_pred ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEc
Q psy7941 16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHN 95 (238)
Q Consensus 16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (238)
..+.+..|+++.|.|.+. +.|.|.+.|++++..+... ..++.+...
T Consensus 3 ~~~~v~~G~~v~l~c~~~--------------------------G~P~P~v~W~k~~~~i~~~--------~~r~~~~~~ 48 (86)
T cd05894 3 NTIVVVAGNKLRLDVPIS--------------------------GEPAPTVTWSRGDKAFTET--------EGRVRVESY 48 (86)
T ss_pred CEEEEEcCCEEEEEeeEe--------------------------ecCCCeEEEEECCEECccC--------CCeEEEEEc
Confidence 357789999999999995 4668899999987654321 224444332
Q ss_pred CCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 96 DANTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 96 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
.....|.|.++..+|+|.|+|.+.|..+
T Consensus 49 -~~~~~L~I~~~~~~D~G~Y~c~a~N~~G 76 (86)
T cd05894 49 -KDLSSFVIEGAEREDEGVYTITVTNPVG 76 (86)
T ss_pred -CCeEEEEECCCccCcCEEEEEEEEeCCC
Confidence 2244899999999999999999988644
No 100
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.44 E-value=2.9e-12 Score=79.90 Aligned_cols=85 Identities=14% Similarity=0.249 Sum_probs=59.0
Q ss_pred eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEE
Q psy7941 12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLS 91 (238)
Q Consensus 12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 91 (238)
..++..+.+..|+++.|.|.+. +.|.|.+.|++++..+.. .....
T Consensus 4 v~~p~~~~v~~G~~v~l~C~~~--------------------------G~P~p~v~W~~~g~~~~~---------~~~~~ 48 (90)
T cd04972 4 VDGPNATVVYEGGTATIRCTAE--------------------------GSPLPKVEWIIAGLIVIQ---------TRTDT 48 (90)
T ss_pred ccCCcCEEEcCCCcEEEEEEEE--------------------------EcCCCeEEEEECCEEccC---------CccEE
Confidence 4566777799999999999995 456888999998765321 11111
Q ss_pred EEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEE
Q psy7941 92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLE 132 (238)
Q Consensus 92 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~ 132 (238)
.. ......+|.|.++..+|.|.|+|.+.|..+ ....+.|.
T Consensus 49 ~~-~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~ 89 (90)
T cd04972 49 LE-TTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVT 89 (90)
T ss_pred EE-ecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEe
Confidence 11 112234899999999999999999988643 34444443
No 101
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.44 E-value=2e-12 Score=78.74 Aligned_cols=84 Identities=21% Similarity=0.313 Sum_probs=58.1
Q ss_pred CCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEE
Q psy7941 24 RDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLN 103 (238)
Q Consensus 24 ~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 103 (238)
+++.|+|.+... ..+++.+.|++++..+... ....+|...........|.
T Consensus 1 ~~~~l~C~v~~d------------------------~~l~~~~~W~~dg~~i~~~------~~~~~~~~~~~~~~~~~L~ 50 (85)
T cd05853 1 ESIVLPCQVSHD------------------------HSLDIVFTWSFNGHLIDFQ------KDGDHFERVGGQDSAGDLM 50 (85)
T ss_pred CcEEEEEEeccC------------------------CCCCcEEEEEECCEECccc------CCCccEEEeccCCCCCcEE
Confidence 468899998642 2335679999988765321 1123444322212233899
Q ss_pred EcccCcccCeEEEEEEecC-CCcceeeEEEEEcCC
Q psy7941 104 IRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPP 137 (238)
Q Consensus 104 i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~ 137 (238)
|.+++..|+|.|+|.+++. ......+.|.|..||
T Consensus 51 I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~~pP 85 (85)
T cd05853 51 IRSIQLKHAGKYVCMVQTSVDKLSAAADLIVRGPP 85 (85)
T ss_pred EecCCHHHCEEEEEEEEcccCceEEEEEEEEecCC
Confidence 9999999999999999885 556778889998776
No 102
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.44 E-value=2.4e-12 Score=81.40 Aligned_cols=93 Identities=23% Similarity=0.362 Sum_probs=61.7
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN 87 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 87 (238)
+|.|. .+.+..+.+|+++.|.|.+.+ .|.|.+.|++++..+.... ....
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g--------------------------~p~p~v~W~~~~~~~~~~~----~~~~ 50 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEG--------------------------DPIPEITWRRATRNFSEGD----KSLD 50 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeE--------------------------cCCCcEEEEECCcccCCCC----cccc
Confidence 57775 566788999999999999853 4567899999763321100 0012
Q ss_pred ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEE
Q psy7941 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLE 132 (238)
Q Consensus 88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~ 132 (238)
+++.+.. .....+|.|.+++.+|+|.|+|.+.|..+ ....+.|.
T Consensus 51 ~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~ 95 (96)
T cd05732 51 GRIVVRG-HARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLE 95 (96)
T ss_pred ceEEEeC-CccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEe
Confidence 2333322 22345899999999999999999988633 34444443
No 103
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.43 E-value=4.8e-13 Score=81.25 Aligned_cols=72 Identities=19% Similarity=0.314 Sum_probs=50.6
Q ss_pred EEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcce------EEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEE
Q psy7941 157 KLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKV------FSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLM 230 (238)
Q Consensus 157 ~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~ 230 (238)
.|.|.+.|.|.|.++|++ ++..+..... ..... .....+.|.|.++..+|+|.|+|.|.|..|.. ++++.
T Consensus 2 ~i~~~v~G~P~P~v~W~k-~g~~i~~~~~--~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~-~~~~~ 77 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYH-NGAVLNESDY--IRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQD-SKSIS 77 (81)
T ss_pred eEEEEeEeeCCCcEEEEE-CCEECcCCCc--eeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCe-eeEEE
Confidence 468999999999999999 6655532211 00000 01123469999999999999999999999943 66665
Q ss_pred EE
Q psy7941 231 LH 232 (238)
Q Consensus 231 l~ 232 (238)
|.
T Consensus 78 ~~ 79 (81)
T cd04971 78 AH 79 (81)
T ss_pred ee
Confidence 43
No 104
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.43 E-value=4.6e-12 Score=79.85 Aligned_cols=91 Identities=22% Similarity=0.446 Sum_probs=61.9
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEE
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTH 94 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (238)
.+.+.+.+|+++.|.|.+.+. +.+.+.|++.++..... .........|+.+..
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~--------------------------~~~~v~W~~p~~~~~~~-~~~~~~~~~r~~~~~ 56 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNN--------------------------DNSSLQWSNPNQQTLYF-NDKRALRDNRIQLVN 56 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCC--------------------------CCceEEEeCCCCcEEEe-ccccccccCcEEEEc
Confidence 356789999999999998542 24469999865443221 111112345777654
Q ss_pred cCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEE
Q psy7941 95 NDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLE 132 (238)
Q Consensus 95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~ 132 (238)
.....++|.|.+++.+|+|.|+|.+.......+.+.|.
T Consensus 57 ~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~ 94 (95)
T cd05717 57 FSANELSISISNVSLSDEGRYTCSLYTMPVQTAKATVT 94 (95)
T ss_pred CCCCeeEEEEccCCcccCEEEEEEEecCCCceEEEEEE
Confidence 44456799999999999999999997655445555554
No 105
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.43 E-value=2.4e-12 Score=79.70 Aligned_cols=82 Identities=27% Similarity=0.452 Sum_probs=57.1
Q ss_pred cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEc---CCCe
Q psy7941 23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHN---DANT 99 (238)
Q Consensus 23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 99 (238)
|+++.|.|.+.+ .|++.+.|++++..+.. ...++.+... ....
T Consensus 1 g~~~~l~C~~~g--------------------------~p~~~i~W~k~~~~i~~--------~~~r~~~~~~~~~~~~~ 46 (88)
T cd05735 1 GQKKEMSCTAHG--------------------------EKPIIVRWEKEDRIINP--------EMSRYLVSTKEVGDEVI 46 (88)
T ss_pred CCeEEEEEEEEC--------------------------CCCCEEEEeeCCEECCC--------CCCcEEEEEecCCCcEE
Confidence 789999999963 45778999998754321 1123333211 1122
Q ss_pred EEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCc
Q psy7941 100 WTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPD 138 (238)
Q Consensus 100 ~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~ 138 (238)
.+|.|.++..+|+|.|+|.+.|. +.....+.|.|..+|.
T Consensus 47 s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~~~P~ 86 (88)
T cd05735 47 STLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPD 86 (88)
T ss_pred EEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEeCCCC
Confidence 48999999999999999999886 4456667788876654
No 106
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.42 E-value=9e-13 Score=82.47 Aligned_cols=81 Identities=21% Similarity=0.354 Sum_probs=58.6
Q ss_pred eeecCCCcEEEEEEEcc-----ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 148 MMVPEGGSAKLVCKAKG-----YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 148 ~~~~~g~~~~l~C~~~~-----~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
..+.+|+.+.|.|.+.+ .|.+.+.|++++........ . .......++.|.|..+..+|+|.|+|.+.|..|
T Consensus 9 ~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~---~-~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g 84 (94)
T cd05756 9 SYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTE---E-RSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTY 84 (94)
T ss_pred EEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCccccc---c-cceeeecCCeEEEccCCcccCeEEEEEEcCCCc
Confidence 45678999999999988 68889999995533211110 0 111222456899999999999999999999998
Q ss_pred CCccceEEEEE
Q psy7941 223 PTVSKRLMLHV 233 (238)
Q Consensus 223 ~~~~~~~~l~V 233 (238)
..+..+.|.|
T Consensus 85 -~~~~~~~L~v 94 (94)
T cd05756 85 -CMKVSISLTV 94 (94)
T ss_pred -cEEEEEEEEC
Confidence 4466666654
No 107
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.42 E-value=7e-12 Score=78.36 Aligned_cols=77 Identities=23% Similarity=0.398 Sum_probs=55.3
Q ss_pred eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEE
Q psy7941 12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLS 91 (238)
Q Consensus 12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 91 (238)
...|..+.+..|+++.|.|.+.+. | +.+.|++.++..... ..++.
T Consensus 4 ~v~p~~~~v~~G~~~~l~C~~~G~--------------------------p-~~i~W~~~~~~~~~~--------~~~~~ 48 (92)
T cd04977 4 DIVPSQGEISVGESKFFLCQVIGE--------------------------P-KDISWFSPNGEKLVT--------QQQIS 48 (92)
T ss_pred EEecCcEEECCCCeEEEEEEeEee--------------------------C-CeEEEECCCCCEecc--------CCCEE
Confidence 345677889999999999999642 2 369999855433221 22333
Q ss_pred EEEcCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941 92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 92 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
.........+|+|.+++.+|+|.|+|.+.|..
T Consensus 49 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 80 (92)
T cd04977 49 VVQNDDVRSTLTIYNANIEDAGIYKCVATDAK 80 (92)
T ss_pred EEeCCCCEEEEEEecCCcccCEEEEEEEEcCC
Confidence 33333445599999999999999999998863
No 108
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.41 E-value=1.4e-12 Score=78.58 Aligned_cols=72 Identities=28% Similarity=0.513 Sum_probs=50.1
Q ss_pred EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEee----cCCCeEEEEEeeeCCCCCccceEEE
Q psy7941 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT----RSEMGAYQCIAANGVPPTVSKRLML 231 (238)
Q Consensus 156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~----~~d~G~y~C~~~n~~g~~~~~~~~l 231 (238)
+.|.|.+.|.|.|.++|++ ++..+.... .........++.|.|..+. .+|.|.|+|.|.|..|...++.+.|
T Consensus 1 ~~l~C~~~G~P~P~v~W~k-~g~~~~~~~---~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTR-NGKFFNVAK---DPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL 76 (77)
T ss_pred CEEEEeccccCCCEEEEEE-CCEEccCcC---CCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence 4689999999999999999 554432111 1111222345678888764 2469999999999999776666654
No 109
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.41 E-value=1.4e-12 Score=78.18 Aligned_cols=72 Identities=26% Similarity=0.399 Sum_probs=50.2
Q ss_pred ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEE
Q psy7941 22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWT 101 (238)
Q Consensus 22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (238)
+|+++.|.|.+. +.|.|.++|+|++..+.. +.++..... .+
T Consensus 1 eG~~v~l~C~~~--------------------------g~P~p~i~W~k~g~~~~~---------~~~~~~~~~----~~ 41 (74)
T cd05745 1 EGQTVDFLCEAQ--------------------------GYPQPVIAWTKGGSQLSV---------DRRHLVLSS----GT 41 (74)
T ss_pred CCCeEEEEeECC--------------------------EecCCEEEEEECCEECCC---------CCCeEEccC----Ce
Confidence 589999999984 456888999997664321 222222111 28
Q ss_pred EEEcccCcccCeEEEEEEecCC-CcceeeEEE
Q psy7941 102 LNIRSVRREDRGYYMCQVNTNP-MTKQMAFLE 132 (238)
Q Consensus 102 L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~ 132 (238)
|.|.+++.+|+|.|+|.+.|.. .....+.|.
T Consensus 42 L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 73 (74)
T cd05745 42 LRISRVALHDQGQYECQAVNIVGSQRTVAQLT 73 (74)
T ss_pred EEEeeCCHHhCEEEEEEEEeCCCceeEEEEEe
Confidence 9999999999999999998863 334444443
No 110
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.41 E-value=4.1e-12 Score=78.98 Aligned_cols=78 Identities=22% Similarity=0.440 Sum_probs=56.7
Q ss_pred eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEE
Q psy7941 12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLS 91 (238)
Q Consensus 12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 91 (238)
...+..+.+..|+++.|.|.+.+ .|. .+.|+++++.... ...|+.
T Consensus 4 ~~~~~~~~v~~G~~v~l~C~~~G--------------------------~P~-~v~W~k~~g~~~~--------~~~r~~ 48 (92)
T cd05866 4 SISLSKVELSVGESKFFTCTAIG--------------------------EPE-SIDWYNPQGEKIV--------SSQRVV 48 (92)
T ss_pred EEEecceEEcCCCeEEEEEEEEE--------------------------eCC-eEEEEeCCCeEec--------CCCCEE
Confidence 45677888999999999999864 334 6999986554322 134554
Q ss_pred EEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc
Q psy7941 92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT 125 (238)
Q Consensus 92 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 125 (238)
+.. .....+|.|.++..+|+|.|+|.+.|..+.
T Consensus 49 ~~~-~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 81 (92)
T cd05866 49 VQK-EGVRSRLTIYNANIEDAGIYRCQATDAKGQ 81 (92)
T ss_pred EEe-CCCeeEEEEecCChHHCEEEEEEEEcCCCc
Confidence 432 223448999999999999999999886543
No 111
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.41 E-value=1.9e-12 Score=78.03 Aligned_cols=75 Identities=31% Similarity=0.523 Sum_probs=55.2
Q ss_pred EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEe
Q psy7941 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHC 235 (238)
Q Consensus 156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~ 235 (238)
+.|.|.+.|.|.|.+.|++ ++..+.... .........+..|.|.++..+|.|.|+|.+.|..|.. ..++.|.|..
T Consensus 1 ~~L~C~v~g~P~p~v~W~k-~~~~l~~~~---~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~ 75 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLK-NGMDITPKL---SKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVD-EDISSLFVED 75 (76)
T ss_pred CEeEeEeeecCCCEEEEEE-CCEECCCCC---CccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCc-ceEEEEEEEc
Confidence 4689999999999999999 444432211 1111122233479999999999999999999999954 7888888863
No 112
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.41 E-value=1.4e-12 Score=78.60 Aligned_cols=72 Identities=24% Similarity=0.503 Sum_probs=50.1
Q ss_pred EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecC----CCeEEEEEeeeCCCCCccceEEE
Q psy7941 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS----EMGAYQCIAANGVPPTVSKRLML 231 (238)
Q Consensus 156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~----d~G~y~C~~~n~~g~~~~~~~~l 231 (238)
+.|.|.+.|.|.|+++|++ ++..+.... .........++.|.|..+..+ |.|.|+|.|.|..|...++.+.|
T Consensus 1 ~~l~C~a~G~P~P~i~W~k-~g~~l~~~~---~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTR-NGTHFDIDK---DPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred CEEEeeCcccCCCeEEEEE-CCeECCCcC---CCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 4789999999999999999 454432111 111222234567888777643 78999999999999766666654
No 113
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.40 E-value=7.2e-12 Score=79.84 Aligned_cols=95 Identities=18% Similarity=0.320 Sum_probs=59.2
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN 87 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 87 (238)
+|.|...+..+.+.+|+++.|.|.+. +.|.|.+.|+|++..+...... ..
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~--------------------------g~P~p~i~W~k~g~~l~~~~~~----~~ 50 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAE--------------------------GRPTPTIQWLKNGQPLETDKDD----PR 50 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCC--------------------------cCCCCEEEEEECCEECccccCC----CC
Confidence 58888899999999999999999985 3557789999987654321000 00
Q ss_pred ccEEEEEcCCCeEEEE--EcccCcccCeEEEEEEecCCCc--ceeeEEEE
Q psy7941 88 ARLSVTHNDANTWTLN--IRSVRREDRGYYMCQVNTNPMT--KQMAFLEV 133 (238)
Q Consensus 88 ~~~~~~~~~~~~~~L~--i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v 133 (238)
.+.... .......+. ..+++.+|+|.|+|.+.|..+. +..+.|.|
T Consensus 51 ~~~~~~-~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 51 SHRIVL-PSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred cceEEe-cCCcEEEEEeeccCCCcCcCEEEEEEEEccccceecceEEEEe
Confidence 111111 111111222 2334789999999999886443 33444443
No 114
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.40 E-value=9.5e-12 Score=76.46 Aligned_cols=67 Identities=22% Similarity=0.233 Sum_probs=43.8
Q ss_pred eEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCC
Q psy7941 65 KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPP 137 (238)
Q Consensus 65 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~ 137 (238)
.+.|++++..+.... .+.++..........+|.|.+++.+|+|.|+|.+.|. +.....+.|.|..+|
T Consensus 18 ~v~W~~~g~~i~~~~------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~~~P 85 (85)
T cd05854 18 TFTWSLDDFPIDLDK------PNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVRGPP 85 (85)
T ss_pred EEEEEECCeEccccC------CCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEECCC
Confidence 689999865542111 1223322111122348999999999999999999886 445667778887654
No 115
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.39 E-value=5.9e-12 Score=75.50 Aligned_cols=65 Identities=20% Similarity=0.348 Sum_probs=44.7
Q ss_pred CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEE
Q psy7941 60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLE 132 (238)
Q Consensus 60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~ 132 (238)
+.|.|.+.|+|++..+.. ...++.+.....+..+|.|.+++.+|+|.|+|.+.|. +.....+.|.
T Consensus 9 G~P~P~v~W~k~~~~i~~--------~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 74 (75)
T cd05744 9 AIPPPQIFWKKNNEMLTY--------NTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLD 74 (75)
T ss_pred ecCCCeEEEEECCEECCC--------CCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEe
Confidence 466888999998765421 1234555444344558999999999999999999886 3344444444
No 116
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.39 E-value=1.2e-12 Score=79.26 Aligned_cols=68 Identities=28% Similarity=0.425 Sum_probs=49.2
Q ss_pred CCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
|+.+.|.|.+.|.|.|.+.|++++ ..+.... ............|.|.++..+|.|.|+|.|.|..|..
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~-~~~~~~~---~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 68 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNW-GHVPDSA---RVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMV 68 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECC-eECCCCC---CEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEE
Confidence 678999999999999999999944 3322110 0000111123579999999999999999999999943
No 117
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.38 E-value=8.2e-12 Score=77.25 Aligned_cols=74 Identities=23% Similarity=0.370 Sum_probs=54.1
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEE
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT 93 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (238)
.|..+.+.+|+++.|.|.+. .+.|.+.+.|++++..+... ..++...
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~-------------------------~g~p~p~i~W~k~g~~~~~~--------~~~~~~~ 48 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPP-------------------------RGHPEPTVSWRKDGQPLNLD--------NERVRIV 48 (86)
T ss_pred CCccEEEeCCCCEEEEEECC-------------------------CCCCCCEEEEEECCEECCCC--------CCCEEEc
Confidence 46778899999999999873 23457789999976553321 2233332
Q ss_pred EcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 94 HNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 94 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
. ..+|.|.+++.+|+|.|+|.+.|...
T Consensus 49 ~----~~~L~I~~~~~~D~G~Y~C~a~N~~G 75 (86)
T cd05724 49 D----DGNLLIAEARKSDEGTYKCVATNMVG 75 (86)
T ss_pred c----CCEEEEeECCcccCEEEEEEEEeccC
Confidence 2 12899999999999999999988643
No 118
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.37 E-value=7.5e-12 Score=78.52 Aligned_cols=78 Identities=18% Similarity=0.367 Sum_probs=55.7
Q ss_pred cceeccCceeEEE---ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 9 PDFLYPLENVTIA---QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 9 p~~~~~~~~~~v~---~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
|.|+..|.++.+. .|+++.|.|.+. +.|.|.++|+|++..+...
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~--------------------------G~P~P~i~W~k~g~~l~~~------- 48 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEAR--------------------------GNPVPTYRWLRNGTEIDTE------- 48 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEee--------------------------ecCCCEEEEEECCeECccC-------
Confidence 7788888887665 468999999985 4568889999987654211
Q ss_pred cCccEEEEEcCCCeEEEEEcccC-cccCeEEEEEEecCCC
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVR-REDRGYYMCQVNTNPM 124 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~~~~ 124 (238)
.+.++..... +|.|.++. .+|+|.|+|.+.|...
T Consensus 49 ~~~~~~~~~g-----~L~i~~~~~~~D~G~Y~C~A~N~~G 83 (94)
T cd05848 49 SDYRYSLIDG-----NLIISNPSEVKDSGRYQCLATNSIG 83 (94)
T ss_pred CCceEEeeCC-----eEEEccCCccCcCEEEEEEEEcCCC
Confidence 1122322221 78898875 6999999999988644
No 119
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.37 E-value=5.2e-12 Score=76.08 Aligned_cols=74 Identities=19% Similarity=0.279 Sum_probs=50.9
Q ss_pred cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEE
Q psy7941 23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTL 102 (238)
Q Consensus 23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 102 (238)
|+++.|.|.+. +.|.|.++|++++..+.... ...++.... .+|
T Consensus 1 G~~v~l~C~~~--------------------------G~P~p~i~W~k~g~~i~~~~------~~~~~~~~~-----~~L 43 (76)
T cd05867 1 GETARLDCQVE--------------------------GIPTPNITWSINGAPIEGTD------PDPRRHVSS-----GAL 43 (76)
T ss_pred CCeEEEEEEee--------------------------EeCCCeEEEEECCEECCCCC------CCceEEeeC-----CEE
Confidence 78899999985 35677899999776432211 112333221 289
Q ss_pred EEcccCcccCeEEEEEEecC-CCcceeeEEEE
Q psy7941 103 NIRSVRREDRGYYMCQVNTN-PMTKQMAFLEV 133 (238)
Q Consensus 103 ~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 133 (238)
.|.+++.+|+|.|+|.+.|. +.....+.|.|
T Consensus 44 ~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 44 ILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred EECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 99999999999999999885 44444555554
No 120
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.37 E-value=2e-12 Score=77.78 Aligned_cols=72 Identities=22% Similarity=0.452 Sum_probs=49.2
Q ss_pred EEEEEEEcc-ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceE
Q psy7941 156 AKLVCKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRL 229 (238)
Q Consensus 156 ~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~ 229 (238)
+.|.|.+.| .|.|.+.|++ ++..+...................|.|..+..+|.|.|+|.|.|..|.. ..++
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k-~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~ 73 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFK-DGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGND-TVTA 73 (75)
T ss_pred CEEEEEccCCCCCceEEEEc-CCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCce-eEEE
Confidence 468999999 9999999999 5554432211100000011223579999999999999999999999943 4443
No 121
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.37 E-value=1.7e-11 Score=76.31 Aligned_cols=77 Identities=22% Similarity=0.427 Sum_probs=55.1
Q ss_pred ccee--ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 9 PDFL--YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 9 p~~~--~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
|.+. ..+..+.+.+|+++.|.|.+.. . .|.+.|++++..+.
T Consensus 2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g--------------------------~-~p~i~W~kng~~l~---------- 44 (91)
T cd05740 2 PVINSNNSVGNQPPEDNQPVTLTCEAEG--------------------------Q-ATYIWWVNNGSLLV---------- 44 (91)
T ss_pred CEeecccccCccccccCCcEEEEEEeCC--------------------------C-CCEEEEEECCEECC----------
Confidence 4453 3455788999999999999964 3 45699999875532
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT 125 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 125 (238)
..++.+... ..+|.|.+++.+|+|.|.|.+.|....
T Consensus 45 ~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 80 (91)
T cd05740 45 PPRLQLSND---NRTLTFNNVTRSDTGHYQCEASNEVSN 80 (91)
T ss_pred CCCEEEeCC---CCEEEECcCChhhCEEEEEEEEcCCCC
Confidence 123322211 128999999999999999999886543
No 122
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.36 E-value=3.4e-12 Score=78.31 Aligned_cols=79 Identities=18% Similarity=0.341 Sum_probs=55.3
Q ss_pred CCcEEEEEEEccccCCeEEEEeCCCee---eEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC-CCccce
Q psy7941 153 GGSAKLVCKAKGYPTPKITWRREDNKE---IIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP-PTVSKR 228 (238)
Q Consensus 153 g~~~~l~C~~~~~p~~~~~W~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g-~~~~~~ 228 (238)
|+++.|.|.+.+.|.+.+.|++.+... +..... . ..........|.|.+++.+|+|.|+|.|.|..+ ...+++
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~--~-~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~s 77 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEE--V-KVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKK 77 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEE--E-ecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEE
Confidence 678999999999999999999744321 110000 0 000112345799999999999999999999765 344788
Q ss_pred EEEEEE
Q psy7941 229 LMLHVH 234 (238)
Q Consensus 229 ~~l~V~ 234 (238)
+.|+|.
T Consensus 78 v~i~V~ 83 (84)
T cd05861 78 VNITVH 83 (84)
T ss_pred EEEEEe
Confidence 888875
No 123
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.36 E-value=1.3e-11 Score=78.20 Aligned_cols=88 Identities=14% Similarity=0.210 Sum_probs=57.4
Q ss_pred eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcC
Q psy7941 17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHND 96 (238)
Q Consensus 17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (238)
...+..|+.+.|.|.+. +.|+|.+.|+|++..+...... ........ ...
T Consensus 12 ~~~~~~~~~~~l~~~v~--------------------------g~P~P~v~W~kdg~~l~~~~~~-~~~~~~~~---~~~ 61 (101)
T cd05859 12 LEFANLHEVKEFVVEVE--------------------------AYPPPQIRWLKDNRTLIENLTE-ITTSEHNV---QET 61 (101)
T ss_pred eEEEecCCcEEEEEEEE--------------------------EeCCCceEEEECCEECcCCcce-EEeccccc---cce
Confidence 66788999999999996 3567789999988765422111 11000000 000
Q ss_pred CCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEE
Q psy7941 97 ANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVV 134 (238)
Q Consensus 97 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~ 134 (238)
....+|.|.+++.+|+|.|+|.+.|... .+..+.|.|.
T Consensus 62 ~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~V~ 100 (101)
T cd05859 62 RYVSKLKLIRAKEEDSGLYTALAQNEDAVKSYTFALQIQ 100 (101)
T ss_pred eeccEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEEEEE
Confidence 1123899999999999999999988643 3444555553
No 124
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.35 E-value=1.2e-11 Score=77.42 Aligned_cols=85 Identities=18% Similarity=0.352 Sum_probs=56.8
Q ss_pred CceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCC-CCcceEEE----eeceEEEEEeecCCCeEEEEEeeeC
Q psy7941 146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPP-SSQKVFSV----ESEVLSLTKVTRSEMGAYQCIAANG 220 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~~~n~ 220 (238)
.+..+..|+++.|.|.+.+.|.|.+.|++++...+....... ...+.... ....|.|.++..+|.|.|+|.+...
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~ 84 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM 84 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee
Confidence 456788999999999999999999999995543222111100 00111111 2358999999999999999999883
Q ss_pred CCCCccceEEEE
Q psy7941 221 VPPTVSKRLMLH 232 (238)
Q Consensus 221 ~g~~~~~~~~l~ 232 (238)
. ...+..+|.
T Consensus 85 ~--~~~~~~~~~ 94 (95)
T cd05882 85 P--VRTAKATVT 94 (95)
T ss_pred c--cccEEEEEE
Confidence 3 324444444
No 125
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.35 E-value=1.4e-11 Score=78.04 Aligned_cols=80 Identities=19% Similarity=0.330 Sum_probs=56.9
Q ss_pred CceeecCCCcEEEEEEEccccCC-eEEEEeCCCeeeEeecCCCCCcceEEE-------eeceEEEEEeecCC-CeEEEEE
Q psy7941 146 GDMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFSV-------ESEVLSLTKVTRSE-MGAYQCI 216 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d-~G~y~C~ 216 (238)
....+.+|+.+.|.|.+.|.|.| .+.|++ ++..+..... ...... ..+.|.|.++..+| .|.|+|.
T Consensus 9 ~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~-~~~~i~~~~~----~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~ 83 (98)
T cd05758 9 ATQYAILGDKGRVECFIFSTPPPDRIVWTW-KENELESGSS----GRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCT 83 (98)
T ss_pred CcEEEeCCCcEEEEEEEcccCCCCEeEEEE-CCEEccCCCC----CCEEEEEecCCCceEEEEEECCccccccceeEEEE
Confidence 34567889999999999999999 699999 5544432110 111111 11379999999855 8999999
Q ss_pred eeeCCCCCccceEEE
Q psy7941 217 AANGVPPTVSKRLML 231 (238)
Q Consensus 217 ~~n~~g~~~~~~~~l 231 (238)
|.|..|.. ...+.|
T Consensus 84 A~N~~G~~-~~~~~L 97 (98)
T cd05758 84 AWNSFGSG-TAIISL 97 (98)
T ss_pred EEcCCCcc-cEEEEe
Confidence 99999954 555554
No 126
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.35 E-value=1.3e-11 Score=76.09 Aligned_cols=81 Identities=19% Similarity=0.354 Sum_probs=53.6
Q ss_pred eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcC
Q psy7941 17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHND 96 (238)
Q Consensus 17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (238)
.+.+.+|+++.|.|.+. +.|.|.++|+|++..+...... ..+.. .
T Consensus 3 ~~~v~~G~~~~L~C~~~--------------------------g~P~p~i~W~k~g~~l~~~~~~------~~~~~---~ 47 (85)
T cd05857 3 LHAVPAANTVKFRCPAA--------------------------GNPTPTMRWLKNGKEFKQEHRI------GGYKV---R 47 (85)
T ss_pred cEEcCCCCEEEEEEEcC--------------------------CCCCCEEEEEECCEECCCCCce------eeeEE---e
Confidence 34578899999999985 3457789999987654321100 01111 1
Q ss_pred CCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEE
Q psy7941 97 ANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLE 132 (238)
Q Consensus 97 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~ 132 (238)
...++|.|.+++.+|+|.|+|.+.|..+ ....+.|.
T Consensus 48 ~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 84 (85)
T cd05857 48 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 84 (85)
T ss_pred CCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEE
Confidence 2234899999999999999999988633 33343343
No 127
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.35 E-value=7.8e-12 Score=75.20 Aligned_cols=74 Identities=19% Similarity=0.363 Sum_probs=50.6
Q ss_pred cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEE
Q psy7941 23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTL 102 (238)
Q Consensus 23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 102 (238)
|+.+.|.|.+. +.|.|.++|++++..+..... ........ ..|
T Consensus 1 g~~~~l~C~a~--------------------------G~P~P~i~W~k~g~~i~~~~~------~~~~~~~~-----~~l 43 (76)
T cd05868 1 GEDGTLICRAN--------------------------GNPKPSISWLTNGVPIEIAPT------DPSRKVDG-----DTI 43 (76)
T ss_pred CCCEEEEEEee--------------------------EeCCCeEEEEECCEEccccCC------CceEEecC-----CEE
Confidence 67899999985 456888999997654321100 11111111 178
Q ss_pred EEcccCcccCeEEEEEEecC-CCcceeeEEEE
Q psy7941 103 NIRSVRREDRGYYMCQVNTN-PMTKQMAFLEV 133 (238)
Q Consensus 103 ~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 133 (238)
.|.+++.+|+|.|+|.+.|. +.....+.|.|
T Consensus 44 ~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 44 IFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred EECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 89999999999999999886 44555666665
No 128
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.35 E-value=1.5e-11 Score=76.82 Aligned_cols=78 Identities=21% Similarity=0.236 Sum_probs=54.8
Q ss_pred ccceeccCceeEEEec---CCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe
Q psy7941 8 EPDFLYPLENVTIAQG---RDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI 84 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g---~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~ 84 (238)
.|.|...|..+.+.++ +++.|.|.+. +.|.|.++|+|++..+..
T Consensus 1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~--------------------------G~P~P~i~W~k~~~~i~~------- 47 (93)
T cd05849 1 GPVFEEQPIDTIYPEESTEGKVSVNCRAR--------------------------ANPFPIYKWRKNNLDIDL------- 47 (93)
T ss_pred CCEEEECCCCEEecCCccCCeEEEeCcCc--------------------------cCCCCEEEEEECCEEccC-------
Confidence 3677777777665544 4799999985 456889999998765321
Q ss_pred ecCccEEEEEcCCCeEEEEEcccC-cccCeEEEEEEecCCC
Q psy7941 85 TNNARLSVTHNDANTWTLNIRSVR-REDRGYYMCQVNTNPM 124 (238)
Q Consensus 85 ~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~~~~ 124 (238)
...++.+.. ..|.|.++. .+|+|.|.|.+.|...
T Consensus 48 -~~~~~~~~~-----g~L~I~~~~~~~D~G~Y~C~A~N~~G 82 (93)
T cd05849 48 -TNDRYSMVG-----GNLVINNPDKYKDAGRYVCIVSNIYG 82 (93)
T ss_pred -CCCeEEEEC-----CEEEECcCCcCCCCEEEEEEEEeCcc
Confidence 122333322 289999885 6899999999988644
No 129
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.34 E-value=1.4e-11 Score=76.79 Aligned_cols=82 Identities=29% Similarity=0.487 Sum_probs=56.0
Q ss_pred cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEE
Q psy7941 23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTL 102 (238)
Q Consensus 23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 102 (238)
|+++.|.|.+. +.|.|.+.|++++........ .......++.+... .+|
T Consensus 1 G~~v~L~C~~~--------------------------g~P~p~v~W~k~g~~~~~~~~-~~~~~~~r~~v~~~----~~L 49 (90)
T cd05726 1 GRTVTFQCEAT--------------------------GNPQPAIFWQKEGSQNLLFSY-QPPQSSSRFSVSQT----GDL 49 (90)
T ss_pred CCEEEEEEECC--------------------------ccCCCEEEEEeCCCcceeecc-cCCCCCCeEEECCC----CeE
Confidence 68899999874 456778999998654322111 01112345555332 279
Q ss_pred EEcccCcccCeEEEEEEecC-CCcceeeEEEEEc
Q psy7941 103 NIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVI 135 (238)
Q Consensus 103 ~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~ 135 (238)
.|.+++.+|+|.|+|.+.|. +.....+.|.|..
T Consensus 50 ~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 83 (90)
T cd05726 50 TITNVQRSDVGYYICQTLNVAGSILTKAYLEVTD 83 (90)
T ss_pred EEeeCChhhCEEEEEEEEcCCCceEEEEEEEEee
Confidence 99999999999999999885 4455667777764
No 130
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.34 E-value=5.8e-12 Score=77.48 Aligned_cols=80 Identities=19% Similarity=0.250 Sum_probs=54.2
Q ss_pred CCcEEEEEEEccc--cCCeEEEEeCCCeeeEeecCC-CCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceE
Q psy7941 153 GGSAKLVCKAKGY--PTPKITWRREDNKEIIVRSNP-PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRL 229 (238)
Q Consensus 153 g~~~~l~C~~~~~--p~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~ 229 (238)
|+.+.|.|.+.+. |.+.+.|.+++.......... ...........+.|.|.+++.+|+|.|+|.|.|..|. .+.+.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~-~~~s~ 79 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMD-QKEST 79 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCc-eEEEE
Confidence 6789999999998 888999987443221110000 0000011123457999999999999999999999984 36677
Q ss_pred EEEE
Q psy7941 230 MLHV 233 (238)
Q Consensus 230 ~l~V 233 (238)
.|.|
T Consensus 80 ~v~v 83 (84)
T cd05742 80 KVNI 83 (84)
T ss_pred EEEE
Confidence 6665
No 131
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.33 E-value=2.1e-11 Score=73.92 Aligned_cols=67 Identities=19% Similarity=0.404 Sum_probs=50.5
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEE
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTH 94 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (238)
|+...+.+|+++.|.|.+... .+.+.|+|++..+. .+.++.+..
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~---------------------------~~~v~W~k~g~~l~---------~~~~~~~~~ 44 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD---------------------------VQSINWTKDGVQLG---------ENNRTRITG 44 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC---------------------------CceEEEeeCCcCCC---------CCceEEEeC
Confidence 456778999999999998642 34699999876542 123444432
Q ss_pred cCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 95 NDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
. +|.|.+++.+|+|.|+|.+.+.
T Consensus 45 ~-----~L~I~~~~~~DsG~Y~C~a~n~ 67 (79)
T cd04973 45 E-----EVQIKDAVPRDSGLYACVTSSP 67 (79)
T ss_pred C-----EEEECCCChhhCEEEEEEEeCC
Confidence 2 8999999999999999999765
No 132
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.33 E-value=1.1e-11 Score=77.52 Aligned_cols=71 Identities=28% Similarity=0.597 Sum_probs=51.6
Q ss_pred CCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeec-CCCeEEEEEeeeCCCCCccce
Q psy7941 152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTR-SEMGAYQCIAANGVPPTVSKR 228 (238)
Q Consensus 152 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~y~C~~~n~~g~~~~~~ 228 (238)
.+..+.|.|.+.|.|.|.++|++ ++..+.... ... ....++.|.|.++.. +|.|.|+|.|.|..|...++.
T Consensus 18 ~~~~~~l~C~~~g~p~p~i~W~k-~~~~l~~~~----~~~-~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S~~ 89 (91)
T cd04967 18 DEGKVSLNCRARGSPPPTYRWLM-NGTEIDDEP----DSR-YSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLSRE 89 (91)
T ss_pred CCCEEEEEEeeeEcCCCEEEEEE-CCEECCCCC----CCC-EEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEecc
Confidence 34679999999999999999999 554442111 111 233456788988774 899999999999999654443
No 133
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.33 E-value=2.8e-11 Score=75.95 Aligned_cols=79 Identities=20% Similarity=0.329 Sum_probs=56.0
Q ss_pred cceeccCceeEEEec---CCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 9 PDFLYPLENVTIAQG---RDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 9 p~~~~~~~~~~v~~g---~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
|.|...|..+.+.+| +++.|.|.+. ++|.+.++|++++..+...
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~--------------------------g~P~p~i~W~~~g~~l~~~------- 48 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRAR--------------------------ASPPATYRWKMNGTEIKFA------- 48 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEce--------------------------eCCCCEEEEEECCEECccC-------
Confidence 677888888877665 5799999985 4567889999987654211
Q ss_pred cCccEEEEEcCCCeEEEEEcccC-cccCeEEEEEEecCCCc
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVR-REDRGYYMCQVNTNPMT 125 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~~~~~ 125 (238)
.+.++.+... +|.|.++. ..|+|.|.|.+.|..+.
T Consensus 49 ~~~~~~~~~g-----~L~I~~~~~~~D~G~Y~C~A~N~~G~ 84 (94)
T cd05850 49 PESRYTLVAG-----NLVINNPQKARDAGSYQCLAINRCGT 84 (94)
T ss_pred CCceEEEECC-----eEEEccCCccCcCEEEEEEEEcCcCc
Confidence 1223333321 78888865 59999999999886443
No 134
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.32 E-value=1.1e-11 Score=74.68 Aligned_cols=77 Identities=23% Similarity=0.257 Sum_probs=54.9
Q ss_pred cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCc
Q psy7941 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNA 88 (238)
Q Consensus 9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ 88 (238)
|.+...|+...+.+|++++|+|.+.+... ...+.|+|++..+.. .
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~-------------------------~~~~~W~kng~~l~~---------~- 45 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPE-------------------------QNSTQWYHNGKLLET---------T- 45 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCC-------------------------CccEEEEECCEEeec---------c-
Confidence 45677888899999999999999864211 235999998765310 0
Q ss_pred cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEE
Q psy7941 89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLE 132 (238)
Q Consensus 89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~ 132 (238)
..+|.|.++ .+|+|.|+|.+.+. ..+..+.|+
T Consensus 46 ----------~~~l~i~~~-~~dsG~Y~C~a~~~-~~S~~v~l~ 77 (78)
T cd05752 46 ----------TNSYRIRAA-NNDSGEYRCQTQGS-SLSDPVHLE 77 (78)
T ss_pred ----------CCeEEEeec-ccCCEEeEEECCCC-cCCCCEEEe
Confidence 118899999 99999999999654 334444443
No 135
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.32 E-value=4e-11 Score=73.89 Aligned_cols=67 Identities=19% Similarity=0.229 Sum_probs=42.9
Q ss_pred eEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCC
Q psy7941 65 KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPP 137 (238)
Q Consensus 65 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~ 137 (238)
.+.|++++..+.... .+.++..........+|.|.+++.+|+|.|+|.+.|. +.....+.|.|..+|
T Consensus 18 ~~~W~~~g~~i~~~~------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~pP 85 (85)
T cd04970 18 TFTWSFNGVPIDFDK------DGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVRGPP 85 (85)
T ss_pred EEEEEECCeEeeccC------CCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEECCC
Confidence 579999766543211 0111211111122338999999999999999999875 445667778887664
No 136
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.32 E-value=1.1e-11 Score=72.11 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=40.3
Q ss_pred CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEE
Q psy7941 60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVV 134 (238)
Q Consensus 60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~ 134 (238)
+.|.|.++|+|++..+.. + .....|.|.++..+|+|.|+|.+.|. +.......+++.
T Consensus 9 g~P~P~v~W~kdg~~l~~---------~---------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 9 AYPPPEFQWYKDGKLISG---------K---------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred EeCCCEEEEEECCEECcc---------c---------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 456888999998765421 0 01128999999999999999999876 333445555543
No 137
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.32 E-value=1.7e-11 Score=76.31 Aligned_cols=84 Identities=19% Similarity=0.302 Sum_probs=60.2
Q ss_pred CceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCc
Q psy7941 146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTV 225 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~ 225 (238)
..+.+..|+.+.|.|.+.+ |.+.+.|++++. .+..... ...........|.|.++..+|+|.|+|.|.+..+...
T Consensus 4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~-~~~~~~~---~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~ 78 (89)
T cd04979 4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGG-PLQRKEE---PEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQT 78 (89)
T ss_pred eEEEEECCCcEEEEEeCCC-CCceEEEEECCc-ccccccC---cCceEEEcCCCEEEccCCHHHCEEEEEEEecCcccee
Confidence 3456788999999999977 888999999543 3221110 0111222334699999999999999999998876566
Q ss_pred cceEEEEEE
Q psy7941 226 SKRLMLHVH 234 (238)
Q Consensus 226 ~~~~~l~V~ 234 (238)
..++.|.|.
T Consensus 79 ~~~~~l~V~ 87 (89)
T cd04979 79 LATYSLNVL 87 (89)
T ss_pred EeEEEEEEe
Confidence 778888775
No 138
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.32 E-value=1.7e-11 Score=73.26 Aligned_cols=62 Identities=24% Similarity=0.481 Sum_probs=46.1
Q ss_pred cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEE
Q psy7941 23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTL 102 (238)
Q Consensus 23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 102 (238)
|+++.|.|.+. +.|.+.+.|++++..+. ...++.+.... +|
T Consensus 1 G~~v~L~C~~~--------------------------g~P~p~v~W~k~~~~~~---------~~~~~~~~~~~----~L 41 (73)
T cd04969 1 GGDVIIECKPK--------------------------AAPKPTISWSKGTELLT---------NSSRICIWPDG----SL 41 (73)
T ss_pred CCeEEEEEeee--------------------------EcCCCEEEEEECCEEcc---------cCCCEEECCCC----eE
Confidence 67899999985 34577899999876532 23344433222 79
Q ss_pred EEcccCcccCeEEEEEEecCC
Q psy7941 103 NIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 103 ~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
.|.+++.+|+|.|+|.+.|..
T Consensus 42 ~i~~v~~~D~G~Y~C~a~N~~ 62 (73)
T cd04969 42 EILNVTKSDEGKYTCFAENFF 62 (73)
T ss_pred EEccCChhHCEEEEEEEECCC
Confidence 999999999999999998863
No 139
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.32 E-value=4.4e-11 Score=77.13 Aligned_cols=96 Identities=20% Similarity=0.261 Sum_probs=61.9
Q ss_pred ccceeccCceeEE-E---ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE
Q psy7941 8 EPDFLYPLENVTI-A---QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV 83 (238)
Q Consensus 8 ~p~~~~~~~~~~v-~---~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~ 83 (238)
+|.|..++....+ . .|.++.|.|.+. +.|.+.+.|++++..+...
T Consensus 4 ~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~--------------------------G~P~p~i~W~k~g~~l~~~----- 52 (109)
T cd05773 4 APDLQKGPQLRKVASRGDGSSDANLVCQAQ--------------------------GVPRVQFRWAKNGVPLDLG----- 52 (109)
T ss_pred ccccccCCceEEEEEecCCCCEEEEEEECc--------------------------ccCCCEEEEEECCEECCCC-----
Confidence 6777766663332 2 457899999985 3557789999977654211
Q ss_pred eecCccEEEEE--c-CCCeEEEEEcccC-cccCeEEEEEEecC-CCcceeeEEEEEcCC
Q psy7941 84 ITNNARLSVTH--N-DANTWTLNIRSVR-REDRGYYMCQVNTN-PMTKQMAFLEVVIPP 137 (238)
Q Consensus 84 ~~~~~~~~~~~--~-~~~~~~L~i~~~~-~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~ 137 (238)
+.++.... . .....+|.|.++. .+|.|.|+|.+.|. +.....+.|.+..+|
T Consensus 53 ---~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 53 ---NPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred ---CCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence 11222111 0 1113489999997 59999999999886 444556667766544
No 140
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.31 E-value=2.2e-11 Score=72.30 Aligned_cols=59 Identities=17% Similarity=0.408 Sum_probs=39.6
Q ss_pred CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEE
Q psy7941 60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFL 131 (238)
Q Consensus 60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l 131 (238)
+.|.|.++|+|++..+.. ..++.+.... .|.|.+++.+|+|.|+|.+.|..+ ....+.|
T Consensus 10 G~P~p~v~W~k~g~~~~~---------~~~~~~~~~~----~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L 69 (71)
T cd05723 10 GKPTPTVKWVKNGDMVIP---------SDYFKIVKEH----NLQVLGLVKSDEGFYQCIAENDVGNVQASAQL 69 (71)
T ss_pred EeCCCEEEEEECCeECCC---------CCCEEEEecC----CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEE
Confidence 456788999998765421 2334333322 688889999999999999988643 3333344
No 141
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.30 E-value=3.3e-11 Score=72.94 Aligned_cols=65 Identities=29% Similarity=0.496 Sum_probs=47.7
Q ss_pred cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEE
Q psy7941 23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTL 102 (238)
Q Consensus 23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 102 (238)
|+++.|.|.+. +.|.|.+.|++++..+. ...++.+... .....|
T Consensus 1 G~~v~l~C~~~--------------------------g~P~p~v~W~~~~~~~~---------~~~~~~~~~~-~~~~~L 44 (78)
T cd05743 1 GETVEFTCVAT--------------------------GVPTPIINWRLNWGHVP---------DSARVSITSE-GGYGTL 44 (78)
T ss_pred CCEEEEEEEEE--------------------------EecCCEEEEEECCeECC---------CCCCEEEEEC-CCEEEE
Confidence 68899999985 34577899999765432 2234444332 234589
Q ss_pred EEcccCcccCeEEEEEEecCC
Q psy7941 103 NIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 103 ~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
.|.+++.+|+|.|+|.+.|..
T Consensus 45 ~I~~v~~~D~G~Y~C~a~N~~ 65 (78)
T cd05743 45 TIRDVKESDQGAYTCEAINTR 65 (78)
T ss_pred EECCCChHHCEEEEEEEEecC
Confidence 999999999999999998753
No 142
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.30 E-value=1.4e-11 Score=76.75 Aligned_cols=33 Identities=30% Similarity=0.525 Sum_probs=27.6
Q ss_pred EEEEcccCcccCeEEEEEEecC-CCcceeeEEEE
Q psy7941 101 TLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEV 133 (238)
Q Consensus 101 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 133 (238)
.|.|.+++.+|+|.|+|.+.|. +.....+.|.|
T Consensus 56 ~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V 89 (90)
T cd04974 56 VLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTV 89 (90)
T ss_pred eEEEeccccccCcEEEEEeecccCcccCCEEEEe
Confidence 8999999999999999999885 44556667766
No 143
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.29 E-value=3.4e-11 Score=72.53 Aligned_cols=70 Identities=17% Similarity=0.382 Sum_probs=53.8
Q ss_pred CceeecCCCcEEEEEEEccccCC-eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 146 GDMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
....+.+|+.+.|.|.+.+.|.+ .+.|++ ++..+. ..++.|.|.++ .+|+|.|+|.|.|. .
T Consensus 8 ~~~~v~~G~~V~L~C~~~~~p~~~~~~W~k-ng~~l~-------------~~~~~l~i~~~-~~dsG~Y~C~a~~~---~ 69 (78)
T cd05752 8 PWTTIFQGEKVTLTCNGFNSPEQNSTQWYH-NGKLLE-------------TTTNSYRIRAA-NNDSGEYRCQTQGS---S 69 (78)
T ss_pred CCeEeeCCCCEEEEEeCCCCCCCccEEEEE-CCEEee-------------ccCCeEEEeec-ccCCEEeEEECCCC---c
Confidence 34567899999999999987754 799999 554431 13457889999 99999999999875 3
Q ss_pred ccceEEEEE
Q psy7941 225 VSKRLMLHV 233 (238)
Q Consensus 225 ~~~~~~l~V 233 (238)
.+..++|+|
T Consensus 70 ~S~~v~l~V 78 (78)
T cd05752 70 LSDPVHLEV 78 (78)
T ss_pred CCCCEEEeC
Confidence 467777665
No 144
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.29 E-value=3.5e-11 Score=74.98 Aligned_cols=34 Identities=32% Similarity=0.524 Sum_probs=28.2
Q ss_pred EEEEEcccCcccCeEEEEEEecC-CCcceeeEEEE
Q psy7941 100 WTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEV 133 (238)
Q Consensus 100 ~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 133 (238)
.+|.|.+++.+|+|.|+|.+.|. +.....+.|.|
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 89 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTV 89 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCCCcccceEEEEE
Confidence 48999999999999999999875 44566667766
No 145
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.29 E-value=2.7e-11 Score=73.05 Aligned_cols=74 Identities=18% Similarity=0.273 Sum_probs=49.4
Q ss_pred cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEE
Q psy7941 23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTL 102 (238)
Q Consensus 23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 102 (238)
|+++.|.|.+. +.|.|.+.|++++..+...... .+.. .....|
T Consensus 1 G~~~~l~C~~~--------------------------g~P~p~i~W~~~g~~~~~~~~~------~~~~-----~~~~~L 43 (76)
T cd04978 1 GETGRLDCEAE--------------------------GIPQPTITWRLNGVPIEELPPD------PRRR-----VDGGTL 43 (76)
T ss_pred CCeEEEEEEce--------------------------eeCCCEEEEEECCEECCCCCCc------ceEE-----ccCCEE
Confidence 68899999884 4567889999977654321100 0111 111289
Q ss_pred EEcccCcccCeEEEEEEecC-CCcceeeEEEE
Q psy7941 103 NIRSVRREDRGYYMCQVNTN-PMTKQMAFLEV 133 (238)
Q Consensus 103 ~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 133 (238)
.|.+++.+|+|.|+|.+.|. +.....+.|.|
T Consensus 44 ~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 44 ILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred EECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 99999999999999999885 33444555554
No 146
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.29 E-value=6.6e-11 Score=74.54 Aligned_cols=78 Identities=23% Similarity=0.444 Sum_probs=53.0
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccE
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARL 90 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 90 (238)
|...|....+.+|+++.|.|.+. +.|.|.+.|+|++..+.... +.+.
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~--------------------------g~P~p~i~W~k~g~~l~~~~-------~~~~ 48 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAE--------------------------GEPPPKIEWKKDGVLLNLVS-------DERR 48 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecc--------------------------cCCCCEEEEEECCeECcccc-------Ccce
Confidence 55677888889999999999985 34578899999776543211 1112
Q ss_pred EEEEcCCCeEEEEEccc-----CcccCeEEEEEEecC-CCc
Q psy7941 91 SVTHNDANTWTLNIRSV-----RREDRGYYMCQVNTN-PMT 125 (238)
Q Consensus 91 ~~~~~~~~~~~L~i~~~-----~~~d~G~Y~C~~~~~-~~~ 125 (238)
...... +|.|.++ +.+|.|.|.|.+.|. .+.
T Consensus 49 ~~~~~~----~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~ 85 (95)
T cd05722 49 QQLPNG----SLLITSVVHSKHNKPDEGFYQCVAQNDSLGS 85 (95)
T ss_pred EEccCC----eEEEeeeeccCCCCCcCEEEEEEEECCccCc
Confidence 211111 4555554 689999999999887 443
No 147
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.28 E-value=1.9e-11 Score=74.77 Aligned_cols=73 Identities=29% Similarity=0.376 Sum_probs=58.1
Q ss_pred eecCCCcEEEEEEEcc-ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccc
Q psy7941 149 MVPEGGSAKLVCKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSK 227 (238)
Q Consensus 149 ~~~~g~~~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~ 227 (238)
.+.+|+.++|.|.+.+ .+.+.+.|+++ +..+.. ......|.|..+..+|+|.|+|.+.+..|+..++
T Consensus 10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~-g~~~~~-----------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~ 77 (83)
T cd05753 10 VVFEGEPLVLRCHGWKNKPVYKVTYYRD-GKAKKY-----------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSE 77 (83)
T ss_pred eecCCCCEEEEeeCCCCCcceEEEEEEC-CeEccc-----------cCCCceEEECccCHHHCEEEEEEEEeCCceecCC
Confidence 5788999999999854 66779999994 433321 1124579999999999999999999999987788
Q ss_pred eEEEEE
Q psy7941 228 RLMLHV 233 (238)
Q Consensus 228 ~~~l~V 233 (238)
.+.|+|
T Consensus 78 ~~~i~~ 83 (83)
T cd05753 78 PVSITV 83 (83)
T ss_pred CEEEEC
Confidence 888775
No 148
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.28 E-value=5e-11 Score=74.13 Aligned_cols=83 Identities=25% Similarity=0.394 Sum_probs=56.1
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEE
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT 93 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (238)
++..+.+.+|+++.|+|.+.. |.+.+.|++++........ ...++...
T Consensus 2 ~~~~~~v~~g~~v~L~C~~~~---------------------------p~~~i~W~k~~~~~~~~~~-----~~~~~~~~ 49 (89)
T cd04979 2 EEKVVTVVEGNSVFLECSPKS---------------------------NLASVVWLFQGGPLQRKEE-----PEERLLVT 49 (89)
T ss_pred cceEEEEECCCcEEEEEeCCC---------------------------CCceEEEEECCcccccccC-----cCceEEEc
Confidence 456788999999999999742 3557999998765322110 11233332
Q ss_pred EcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEE
Q psy7941 94 HNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV 133 (238)
Q Consensus 94 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v 133 (238)
.. .|.|.+++.+|+|.|.|.+.+.......+.+.|
T Consensus 50 ~~-----~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l 84 (89)
T cd04979 50 ED-----GLLIRSVSPADAGVYTCQSVEHGFKQTLATYSL 84 (89)
T ss_pred CC-----CEEEccCCHHHCEEEEEEEecCccceeEeEEEE
Confidence 21 699999999999999999976654444444443
No 149
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.28 E-value=1.2e-10 Score=73.84 Aligned_cols=83 Identities=14% Similarity=0.232 Sum_probs=57.0
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCc-eEEEEeCCceeeeeeeeeEeec
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM-KVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
+|.+ ..+..+.+..|+++.|.|.+. +.|.| .+.|++++..+... .
T Consensus 2 pp~i-~~~~~~~~~~G~~v~L~C~~~--------------------------g~P~P~~v~W~~~~~~i~~~-------~ 47 (98)
T cd05758 2 PPII-TSEATQYAILGDKGRVECFIF--------------------------STPPPDRIVWTWKENELESG-------S 47 (98)
T ss_pred CCeE-cCCCcEEEeCCCcEEEEEEEc--------------------------ccCCCCEeEEEECCEEccCC-------C
Confidence 3444 556778899999999999995 34566 59999977654221 1
Q ss_pred CccEEEEEcC---CCeEEEEEcccCccc-CeEEEEEEecCCC
Q psy7941 87 NARLSVTHND---ANTWTLNIRSVRRED-RGYYMCQVNTNPM 124 (238)
Q Consensus 87 ~~~~~~~~~~---~~~~~L~i~~~~~~d-~G~Y~C~~~~~~~ 124 (238)
..++.+.... ....+|.|.++..+| .|.|.|.+.|..+
T Consensus 48 ~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G 89 (98)
T cd05758 48 SGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFG 89 (98)
T ss_pred CCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCC
Confidence 2344443321 123489999999955 8999999988643
No 150
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.28 E-value=6.8e-11 Score=74.20 Aligned_cols=87 Identities=18% Similarity=0.363 Sum_probs=58.8
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCC-CCCcceEE----EeeceEEEEEeecCCCeEEEEEeee
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNP-PSSQKVFS----VESEVLSLTKVTRSEMGAYQCIAAN 219 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~-~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~n 219 (238)
...+.+.+|+++.|.|.+.+.|.+.+.|++.+...+...+.. ....+... .....|.|.+++.+|+|.|+|.+.+
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 345778999999999999999999999997443322211110 01112111 1234799999999999999999998
Q ss_pred CCCCCccceEEEEE
Q psy7941 220 GVPPTVSKRLMLHV 233 (238)
Q Consensus 220 ~~g~~~~~~~~l~V 233 (238)
..+ .+....|.|
T Consensus 84 ~~~--~~~~~~l~v 95 (95)
T cd07701 84 MPV--KTSKAYLTV 95 (95)
T ss_pred ecC--ccEEEEEEC
Confidence 543 255666554
No 151
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.28 E-value=5.4e-11 Score=72.76 Aligned_cols=69 Identities=19% Similarity=0.288 Sum_probs=51.8
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEE
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT 93 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (238)
.|+...+..|+++.|.|.+.. +.+++.|++++..+... ..++.+.
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~---------------------------~~~~i~W~~ng~~i~~~--------~~r~~~~ 46 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS---------------------------NLARVVWKFDGKVLTPE--------SAKYLLY 46 (87)
T ss_pred CcceEEEECCCCEEEEEECCC---------------------------CCCeEEEEECCEECCCC--------CceEEEE
Confidence 567889999999999999742 24579999987654321 1244333
Q ss_pred EcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 94 HNDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 94 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
.. .|.|.+++.+|+|.|+|.+...
T Consensus 47 ~~-----~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 47 RD-----GLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred CC-----cEEEeCCCHHHCEEEEEEEEec
Confidence 22 7999999999999999999765
No 152
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.27 E-value=4.9e-11 Score=70.41 Aligned_cols=50 Identities=26% Similarity=0.462 Sum_probs=36.6
Q ss_pred CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941 60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
+.|.|.+.|+|+++... ..++..... .+|.|.+++.+|+|.|+|.+.|..
T Consensus 9 g~P~p~v~W~k~~~~~~----------~~~~~~~~~----~~L~I~~v~~~D~G~Y~C~a~N~~ 58 (69)
T cd05725 9 GDPVPTVLWRKEDGELP----------KGRAEILDD----KSLKIRNVTAGDEGSYTCEAENMV 58 (69)
T ss_pred cCCCCEEEEEECCccCC----------CCcEEEeeC----CEEEECcCChhHCEEEEEEEEcCC
Confidence 45678899999865431 233333322 289999999999999999998863
No 153
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.27 E-value=1e-10 Score=70.11 Aligned_cols=55 Identities=20% Similarity=0.330 Sum_probs=39.1
Q ss_pred CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
+.|.|.+.|+|++..+. ...++.+... .....|.|.+++.+|+|.|+|.+.|..+
T Consensus 10 G~P~p~v~W~k~g~~l~---------~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G 64 (74)
T cd05748 10 GRPTPTVTWSKDGKPLK---------LSGRVQIETT-ASSTSLVIKNAERSDSGKYTLTLKNPAG 64 (74)
T ss_pred eeCCCeEEEEECCEEcC---------CCCeEEEEEC-CCeEEEEECCCCcCcCEEEEEEEECCCc
Confidence 46688899999876542 1233333322 2344899999999999999999988643
No 154
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.25 E-value=7.6e-11 Score=70.64 Aligned_cols=64 Identities=25% Similarity=0.423 Sum_probs=44.9
Q ss_pred cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEE
Q psy7941 23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTL 102 (238)
Q Consensus 23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 102 (238)
|+++.|.|.+. +.|.|.+.|++.++..... ..++..... .+|
T Consensus 1 G~~~~l~C~~~--------------------------g~P~p~v~W~~~~~~~~~~--------~~~~~~~~~----~~L 42 (74)
T cd05764 1 GQRATLRCKAR--------------------------GDPEPAIHWISPDGKLISN--------SSRTLVYDN----GTL 42 (74)
T ss_pred CCeEEEEEEcc--------------------------CcCCCEEEEEeCCCEEecC--------CCeEEEecC----CEE
Confidence 68899999984 3457789999865543321 122222111 179
Q ss_pred EEcccCcccCeEEEEEEecCCC
Q psy7941 103 NIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 103 ~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
.|.++..+|.|.|+|.+.|...
T Consensus 43 ~i~~~~~~D~G~Y~C~a~N~~G 64 (74)
T cd05764 43 DILITTVKDTGSFTCIASNAAG 64 (74)
T ss_pred EEEECChhhCEEEEEEEECCCC
Confidence 9999999999999999988643
No 155
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.25 E-value=5.9e-11 Score=71.57 Aligned_cols=54 Identities=22% Similarity=0.354 Sum_probs=36.7
Q ss_pred CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
+.|.|.++|+|++..+... ..++.+... ..+|.|.+++.+|+|.|.|.+.|..+
T Consensus 9 g~P~p~v~W~k~g~~l~~~--------~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G 62 (77)
T cd05760 9 GHPRPTYQWFRDGTPLSDG--------QGNYSVSSK---ERTLTLRSAGPDDSGLYYCCAHNAFG 62 (77)
T ss_pred ecCCCcEEEEECCEECCCC--------CccEEEeCC---CCEEEEeeCCcccCEEEEEEEEeCCC
Confidence 4567889999987653211 122222211 12899999999999999999988643
No 156
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.24 E-value=4.3e-11 Score=73.27 Aligned_cols=69 Identities=20% Similarity=0.495 Sum_probs=48.9
Q ss_pred eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCC
Q psy7941 18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDA 97 (238)
Q Consensus 18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (238)
+.+..|+++.|.|.+. +.|.|.+.|++++..+..... . ....
T Consensus 4 ~~~~~G~~v~L~C~~~--------------------------g~p~p~i~W~k~~~~~~~~~~---------~---~~~~ 45 (82)
T cd05856 4 IARPVGSSVRLKCVAS--------------------------GNPRPDITWLKDNKPLTPTEI---------G---ESRK 45 (82)
T ss_pred eeccCCCeEEEEEEee--------------------------EeCCCcEEEEECCcCCcCCcc---------c---eecC
Confidence 4567899999999985 245677999998765422110 0 0111
Q ss_pred CeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 98 NTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 98 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
...+|.|.+++.+|+|.|+|.+.|...
T Consensus 46 ~~~~L~i~~v~~~D~G~Y~C~a~N~~G 72 (82)
T cd05856 46 KKWTLSLKNLKPEDSGKYTCHVSNRAG 72 (82)
T ss_pred ceEEEEEccCChhhCEEEEEEEEcCCc
Confidence 234899999999999999999987543
No 157
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.24 E-value=6.4e-11 Score=74.08 Aligned_cols=77 Identities=19% Similarity=0.356 Sum_probs=51.2
Q ss_pred ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEc
Q psy7941 16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHN 95 (238)
Q Consensus 16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (238)
....+.+|+++.|.|.+.+... ...|.+.+.|||++....... ..+.|+...
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~---------------------~~~p~~~v~Wyk~~~~~~~~~-----~~~~r~~~~-- 58 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYI---------------------AQSPGLNLTWYKSDGKTPIPT-----EERSRMHQQ-- 58 (94)
T ss_pred eEEEEecCCCeEEECCCCCccc---------------------ccCCCceEEEEEcCCCCcccc-----cccceeeec--
Confidence 4567889999999999853100 003466799999875432110 012233221
Q ss_pred CCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941 96 DANTWTLNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 96 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
...|.|.+++.+|+|.|+|.+.|..
T Consensus 59 ---~~~L~I~~~~~~DsG~Y~C~~~N~~ 83 (94)
T cd05756 59 ---KDLLWFLPAALEDSGLYTCVVRNST 83 (94)
T ss_pred ---CCeEEEccCCcccCeEEEEEEcCCC
Confidence 1289999999999999999998754
No 158
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.24 E-value=6.5e-11 Score=70.16 Aligned_cols=60 Identities=17% Similarity=0.273 Sum_probs=39.9
Q ss_pred CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEE
Q psy7941 60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEV 133 (238)
Q Consensus 60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v 133 (238)
+.|.|.+.|+|++..+... .++... ..+|.|.+++.+|+|.|+|.+.|... ......+.|
T Consensus 9 g~P~p~v~W~k~g~~l~~~---------~~~~~~-----~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 9 AYPPPEIQWYKNGKLISEK---------NRTKKS-----GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred EeCCCEEEEEECCEECCCC---------CEEEcC-----CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 4567889999987654321 122211 12899999999999999999988543 334444444
No 159
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.24 E-value=6.7e-11 Score=70.17 Aligned_cols=52 Identities=23% Similarity=0.334 Sum_probs=36.4
Q ss_pred CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
+.|.|.+.|+|++..+... +.... ....+|.|.+++.+|+|.|+|.+.|...
T Consensus 9 G~P~P~v~W~k~~~~~~~~----------~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 60 (71)
T cd05876 9 GLPTPEVHWDRIDGPLSPN----------RTKKL---NNNKTLQLDNVLESDDGEYVCTAENSEG 60 (71)
T ss_pred EecCCeEEEEECCcCCCCC----------ceeEE---cCCCEEEEcccCHHhCEEEEEEEEcCCC
Confidence 4668899999987653211 11111 1122899999999999999999988643
No 160
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.24 E-value=8.5e-11 Score=72.47 Aligned_cols=82 Identities=29% Similarity=0.489 Sum_probs=57.5
Q ss_pred eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccc
Q psy7941 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSK 227 (238)
Q Consensus 148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~ 227 (238)
..+..|+.+.|.|.+.+.|.+.+.|++ ++..+....... ..........|.|..+..+|.|.|+|.+.|..|. .+.
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k-~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~-~~~ 79 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLK-DGKPFKKEHRIG--GYKVRKKKWTLILESVVPSDSGKYTCIVENKYGS-INH 79 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEE-CCEECcccCcee--EEEccCcEEEEEEeECCcccCEEEEEEEEECCce-EEE
Confidence 346679999999999999999999999 444332111000 0001112236889999999999999999999994 467
Q ss_pred eEEEEE
Q psy7941 228 RLMLHV 233 (238)
Q Consensus 228 ~~~l~V 233 (238)
++.|.|
T Consensus 80 ~~~l~v 85 (85)
T cd05729 80 TYKVDV 85 (85)
T ss_pred EEEEeC
Confidence 776654
No 161
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.23 E-value=8.2e-11 Score=71.32 Aligned_cols=70 Identities=11% Similarity=0.258 Sum_probs=51.5
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCc-eEEEEeCCceeeeeeeeeEeecCcc
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM-KVAWIKADTKAVLAIHEHVITNNAR 89 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~ 89 (238)
|...|+++.+.+|+++.|.|.+. +.|.| .+.|++++..+.. +
T Consensus 1 f~~~P~~~~v~~G~~v~l~C~a~--------------------------G~P~P~~I~W~k~g~~l~~-----------~ 43 (81)
T cd05749 1 FTVEPEDLSVTANTPFNLTCQAV--------------------------GPPEPVEILWWQGGSPLGD-----------P 43 (81)
T ss_pred CcCCCCceEEcCCCCEEEEEEee--------------------------eecCCeEEEEEECCEECCC-----------C
Confidence 45678889999999999999985 46678 6999998765421 0
Q ss_pred EEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 90 LSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 90 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
.. .....|.|.++ .|+|.|.|.+.|..+
T Consensus 44 ~~-----~~~s~L~i~~~--~d~g~Y~C~A~N~~G 71 (81)
T cd05749 44 PA-----PSPSVLNVPGL--NETSKFSCEAHNAKG 71 (81)
T ss_pred CC-----CCCCEEEEccc--cCCeEEEEEEEeccC
Confidence 00 11127888877 478999999988644
No 162
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.22 E-value=3.2e-11 Score=72.63 Aligned_cols=71 Identities=23% Similarity=0.493 Sum_probs=47.6
Q ss_pred EEEEEEEcc-ccCCeEEEEeCCCeeeEeecCCCCCcceEE--EeeceEEEEEeecCCCeEEEEEeeeCCCCCccceE
Q psy7941 156 AKLVCKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFS--VESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRL 229 (238)
Q Consensus 156 ~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~ 229 (238)
+.|.|.+.+ .|.+.+.|++ ++..+....... ...... ...+.|.|.++..+|+|.|+|.+.|..|.. +.++
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~-~g~~i~~~~~~~-~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~-~~~~ 74 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFK-NGKEIGAKNKPD-NKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGND-SVTA 74 (76)
T ss_pred CEEEEecccCCCCCceEEEE-CCcccccCCCCC-ceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCce-eEEE
Confidence 478999864 7888999999 555443211110 001111 123579999999999999999999999943 4444
No 163
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.22 E-value=3e-10 Score=71.56 Aligned_cols=87 Identities=20% Similarity=0.403 Sum_probs=57.9
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCC-CCCcceEE----EeeceEEEEEeecCCCeEEEEEeee
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNP-PSSQKVFS----VESEVLSLTKVTRSEMGAYQCIAAN 219 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~-~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~n 219 (238)
...+.+.+|+.+.|.|.+.+.+.+.+.|++.++..+...... ....+... .....|.|.+++.+|+|.|+|.+.+
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 83 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT 83 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence 455778999999999999888888999987443322211110 01111111 1234799999999999999999997
Q ss_pred CCCCCccceEEEEE
Q psy7941 220 GVPPTVSKRLMLHV 233 (238)
Q Consensus 220 ~~g~~~~~~~~l~V 233 (238)
... . +.++.|.|
T Consensus 84 ~~~-~-~~~~~~~v 95 (95)
T cd05717 84 MPV-Q-TAKATVTV 95 (95)
T ss_pred CCC-c-eEEEEEEC
Confidence 653 2 55555554
No 164
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.22 E-value=1.2e-10 Score=70.00 Aligned_cols=66 Identities=26% Similarity=0.338 Sum_probs=42.1
Q ss_pred cCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEE
Q psy7941 59 TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEV 133 (238)
Q Consensus 59 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 133 (238)
.+.|.|.++|+|++....... ...++..... ...|.|.+++.+|+|.|.|.+.|. +.....+.|.|
T Consensus 8 ~G~P~P~v~W~k~~~~~~~~~------~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 8 TGHPTPQIAWQKDGGTDFPAA------RERRMHVMPE---DDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred ccccCCEEEEEeCCCccCCcc------cccceEEecC---CCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 356788999999875422110 1223333221 127999999999999999999885 33444555554
No 165
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.22 E-value=1.1e-10 Score=72.64 Aligned_cols=79 Identities=20% Similarity=0.434 Sum_probs=52.3
Q ss_pred eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe-----ecCccEEE
Q psy7941 18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI-----TNNARLSV 92 (238)
Q Consensus 18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~-----~~~~~~~~ 92 (238)
+.+.+|++++|+|.++. .+.+.+.|++++.+.......... ....|+..
T Consensus 2 v~~~~G~~VtL~C~~s~--------------------------~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~ 55 (94)
T cd07690 2 VLGKKGDTAELPCTASQ--------------------------KKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADS 55 (94)
T ss_pred eEeeCCCCEEEEEEeCC--------------------------CCCcEEEEEECCcEEccCcCCEEEEecccccCCCCce
Confidence 56889999999999863 235679999765443221111111 12334443
Q ss_pred EE--cCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 93 TH--NDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 93 ~~--~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
.. ...+.++|.|.+++.+|+|.|+|.+.+.
T Consensus 56 ~~~~~~~g~~~L~I~~l~~sDsgtY~C~v~~~ 87 (94)
T cd07690 56 RRNLWDQGSFPLIIKNLKIEDSDTYICEVEDK 87 (94)
T ss_pred ecccCCCCeEEEEECCCCHHHCEEEEEEECCc
Confidence 33 1345678999999999999999999653
No 166
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.21 E-value=8.6e-11 Score=72.40 Aligned_cols=76 Identities=22% Similarity=0.416 Sum_probs=56.5
Q ss_pred CCceeecCCCcEEEEEEEcc-ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP 223 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~ 223 (238)
+....+..|+.++|.|.+.+ .|.+.+.|++++.. +... ....++.|.|..+..+|+|.|+|.+.|..|.
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~-~~~~---------~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~ 77 (85)
T cd05754 8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGG-LPSR---------AMDFNGILTIRNVQLSDAGTYVCTGSNMLDT 77 (85)
T ss_pred CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCc-CCCc---------ccccCCEEEECCCCHHHCEEEEEEEeccCCe
Confidence 44567889999999999865 78889999995433 2110 1123457999999999999999999999984
Q ss_pred CccceEEE
Q psy7941 224 TVSKRLML 231 (238)
Q Consensus 224 ~~~~~~~l 231 (238)
. ..++.|
T Consensus 78 ~-~~~~~l 84 (85)
T cd05754 78 D-EATATL 84 (85)
T ss_pred E-eEEEEE
Confidence 3 554443
No 167
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.21 E-value=1.4e-10 Score=72.55 Aligned_cols=83 Identities=17% Similarity=0.292 Sum_probs=56.7
Q ss_pred CCceeecCCCcEEEEEEEccccCC-eEEEEeCCCeeeEeecCCCCCcceEE-----EeeceEEEEEeecCC-CeEEEEEe
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFS-----VESEVLSLTKVTRSE-MGAYQCIA 217 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d-~G~y~C~~ 217 (238)
.....+.+|+.+.|.|.+.+.|.| .+.|.+. +..+.... .....+.. ...+.|.|.++...| .|.|.|.|
T Consensus 8 ~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~-~~~i~~~~--~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a 84 (98)
T cd05898 8 EQVQYAVRGERGKVKCFIGSTPPPDRIAWAWK-ENVLESGT--SERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTA 84 (98)
T ss_pred CceEEEeCCCcEEEEEEEccCCCCcEEEEEEc-cccccCCC--CCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEE
Confidence 344668899999999999888887 6899884 33332211 01111111 123579999998777 68999999
Q ss_pred eeCCCCCccceEEE
Q psy7941 218 ANGVPPTVSKRLML 231 (238)
Q Consensus 218 ~n~~g~~~~~~~~l 231 (238)
.|..|.+ ...+.|
T Consensus 85 ~N~~G~d-~~~i~L 97 (98)
T cd05898 85 WNSFGSG-TAIIQL 97 (98)
T ss_pred EeCCccc-eEEEEe
Confidence 9999955 666654
No 168
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.21 E-value=1e-10 Score=68.80 Aligned_cols=59 Identities=22% Similarity=0.302 Sum_probs=40.2
Q ss_pred CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEE
Q psy7941 60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEV 133 (238)
Q Consensus 60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v 133 (238)
+.|.|.+.|+|++..+.. +.++. . ...|.|.++..+|+|.|+|.+.|..+ ......+.+
T Consensus 9 G~P~P~v~W~k~g~~l~~---------~~~~~--~----~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 9 GYPPPEVKWYKNGQLIVL---------NHTFK--R----GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred EeCCCEEEEEECCEECCC---------CCEEc--c----CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 467888999998766432 11111 1 12799999999999999999988643 344444444
No 169
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.21 E-value=5.3e-10 Score=68.53 Aligned_cols=68 Identities=21% Similarity=0.374 Sum_probs=43.5
Q ss_pred cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEE
Q psy7941 23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTL 102 (238)
Q Consensus 23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 102 (238)
|+++.|+|.+.+ .|.+.+.|++.+......... ..+... .......+|
T Consensus 1 Ge~~~l~C~~~~--------------------------~~~~~~~W~~~~~~~~~~~~~-----~~~~~~-~~~~~~s~L 48 (84)
T cd05861 1 GETITVNCIVQG--------------------------NEVVDFSWTYPGKDIGKGIPE-----VEEVKV-PATTLRSTL 48 (84)
T ss_pred CCcEEEEEEEEC--------------------------CCccEEEEEECCccCCCCceE-----EEEEec-CCcEEEEEE
Confidence 789999999964 345679999866432111000 000000 011123499
Q ss_pred EEcccCcccCeEEEEEEecC
Q psy7941 103 NIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 103 ~i~~~~~~d~G~Y~C~~~~~ 122 (238)
.|.+++.+|+|.|.|.+.+.
T Consensus 49 ~I~~~~~~DsG~Y~C~a~n~ 68 (84)
T cd05861 49 TFPHATVEDSGTYECAAHES 68 (84)
T ss_pred EECCCCcCCCEEEEEEEEEC
Confidence 99999999999999999764
No 170
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.20 E-value=9.2e-11 Score=69.18 Aligned_cols=52 Identities=19% Similarity=0.380 Sum_probs=37.0
Q ss_pred CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
+.|.|.+.|+|++..+. ...++.+... .+|.|.+++.+|+|.|+|.+.|..+
T Consensus 9 g~P~p~i~W~k~g~~~~---------~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~N~~G 60 (69)
T cd05746 9 GDPEPTITWNKDGVQVT---------ESGKFHISPE----GYLAIRDVGVADQGRYECVARNTIG 60 (69)
T ss_pred EeCCCEEEEEECCEECC---------CCCCEEECCC----CEEEECcCChhhCEEEEEEEECCCC
Confidence 45678899999765432 1233333222 2899999999999999999987643
No 171
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.20 E-value=1.6e-10 Score=69.09 Aligned_cols=63 Identities=22% Similarity=0.315 Sum_probs=41.7
Q ss_pred CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEE
Q psy7941 60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEV 133 (238)
Q Consensus 60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v 133 (238)
+.|.|.+.|+|++..+... .+.++..... .+|.|.+++.+|+|.|+|.+.|..+. +..+.|.|
T Consensus 9 G~P~p~v~W~k~~~~~~~~-------~~~~~~~~~~----g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 9 GNPDPEITWFKDFLPVDTT-------SNGRIKQLRS----GALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred EecCCEEEEEECCEECccC-------CCCCEEEcCC----cEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 4568889999986543211 1234443222 27999999999999999999886543 34444444
No 172
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.19 E-value=1.6e-10 Score=71.89 Aligned_cols=67 Identities=22% Similarity=0.392 Sum_probs=50.7
Q ss_pred eeecCCCcEEEEEEEcc-c----cCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 148 MMVPEGGSAKLVCKAKG-Y----PTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 148 ~~~~~g~~~~l~C~~~~-~----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
..+..|....|.|...+ . |.|.+.|++ ++.++... ... ...++.|.|.++..+|+|.|+|.+.|..+
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk-~~~~i~~~------~~~-~~~~~~L~I~~v~~~DsG~YtC~~~n~~~ 76 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYK-DCKLLEGD------RKR-FVKGSKLLIQNVTEEDAGNYTCKLTFTHN 76 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeE-CCEECCCC------ccE-EecCCEEEEeeCChhhCEEEEEEEEecCC
Confidence 34677899999998743 2 577999999 55554321 111 12566899999999999999999999887
No 173
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.19 E-value=1.1e-10 Score=72.52 Aligned_cols=72 Identities=22% Similarity=0.422 Sum_probs=54.5
Q ss_pred ceeecCCCcEEEEEEE-ccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 147 DMMVPEGGSAKLVCKA-KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 147 ~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
...+.+|..+.|.|.. .|+|.+.+.|+++ +.+..... .........++.|.+.++..+|+|.|+|.|+|...
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~-~~~~~~~~---d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~ 84 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLN-EFPNFIPE---DGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSS 84 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCCCEEEEEEC-Cccccccc---CCCeEEeCCCCcEEEeecCHhhCceeEEEEEeccc
Confidence 3568889999999976 6799999999994 33321111 11233444467999999999999999999999875
No 174
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.19 E-value=2.7e-10 Score=69.97 Aligned_cols=82 Identities=20% Similarity=0.326 Sum_probs=49.7
Q ss_pred cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEE
Q psy7941 23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTL 102 (238)
Q Consensus 23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 102 (238)
|+++.|.|.+.+. ..|.+.+.|++++.......... .+...........+|
T Consensus 1 Ge~~~L~C~~~g~------------------------~~~~~~i~W~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~L 51 (84)
T cd05742 1 GETLVLNCTVLTE------------------------LNEGVDFQWTYPGKKRGRGKSMV-----TRQSLSEATELSSTL 51 (84)
T ss_pred CCeEEEEEEEEeC------------------------CCccEEEEEecCCcccCCceEee-----cccccccceEEEEEE
Confidence 7899999999642 12467899998765432111110 011101111123489
Q ss_pred EEcccCcccCeEEEEEEecCCC-cceeeEEEE
Q psy7941 103 NIRSVRREDRGYYMCQVNTNPM-TKQMAFLEV 133 (238)
Q Consensus 103 ~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v 133 (238)
.|.+++.+|+|.|+|.+.+... ....+.+.|
T Consensus 52 ~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v 83 (84)
T cd05742 52 TIPNATLKDSGTYTCAASSGTMDQKESTKVNI 83 (84)
T ss_pred EECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence 9999999999999999987533 333444433
No 175
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.17 E-value=2.8e-10 Score=69.48 Aligned_cols=69 Identities=25% Similarity=0.417 Sum_probs=43.9
Q ss_pred cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceee-eeeeeeEeecCccEEEEEcCCCeEE
Q psy7941 23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAV-LAIHEHVITNNARLSVTHNDANTWT 101 (238)
Q Consensus 23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (238)
|+++.|.|.+. +.|.|.+.|+|+..... ...... ....++... ...+
T Consensus 1 G~~v~l~C~~~--------------------------g~P~p~v~W~k~~~~~~~~~~~~~--~~~~~~~~~----~~~~ 48 (81)
T cd05765 1 GETASFHCDVT--------------------------GRPPPEITWEKQVHGKENLIMRPN--HVRGNVVVT----NIGQ 48 (81)
T ss_pred CCcEEEEeecc--------------------------ccCCCcEEEEecCCCCcceeecCC--cccCCEEEc----cccE
Confidence 78899999874 45677899999742110 000000 001122221 1238
Q ss_pred EEEcccCcccCeEEEEEEecCC
Q psy7941 102 LNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 102 L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
|.|.+++.+|+|.|+|.+.|..
T Consensus 49 L~I~~~~~~D~G~Y~C~a~N~~ 70 (81)
T cd05765 49 LVIYNAQPQDAGLYTCTARNSG 70 (81)
T ss_pred EEEccCCcccCEEEEEEEecCC
Confidence 9999999999999999998853
No 176
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.16 E-value=2.7e-10 Score=66.97 Aligned_cols=60 Identities=18% Similarity=0.362 Sum_probs=42.0
Q ss_pred cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEE
Q psy7941 23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTL 102 (238)
Q Consensus 23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 102 (238)
|+++.|.|.+. +.|.|.++|+|++..+.. ..++.. ....|
T Consensus 1 G~~v~L~C~a~--------------------------G~P~P~v~W~k~g~~l~~---------~~~~~~-----~~~~L 40 (69)
T cd05739 1 GGSVNLTCVAV--------------------------GAPMPYVKWMKGGEELTK---------EDEMPV-----GRNVL 40 (69)
T ss_pred CCeEEEEEEee--------------------------ecCCCEEEEEECCEECCC---------ccceec-----CccEE
Confidence 67899999985 567889999998765321 112211 11278
Q ss_pred EEcccCcccCeEEEEEEecCCC
Q psy7941 103 NIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 103 ~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
.|.+++ |+|.|+|.+.|...
T Consensus 41 ~i~~~~--d~G~Y~C~A~N~~G 60 (69)
T cd05739 41 ELTNIY--ESANYTCVAISSLG 60 (69)
T ss_pred EEeccc--cCeeEEEEEEeCCC
Confidence 888874 79999999987643
No 177
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.16 E-value=6e-10 Score=66.72 Aligned_cols=67 Identities=18% Similarity=0.302 Sum_probs=47.0
Q ss_pred EEEEEEEcc-ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 156 AKLVCKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 156 ~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
+.|.|...+ .|.+.+.|++ ++..+............ ....+.|.+.....+|.+.|+|.|.|+++..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k-~~~~l~~~~~~~~~~~~-~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYR-DRKELKGVISQQENGKT-VSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEE-CCEECCCCcccccCCce-EEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 689999855 8999999999 66655432211111222 2234478888888888889999999998753
No 178
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.15 E-value=2.5e-10 Score=69.85 Aligned_cols=69 Identities=22% Similarity=0.458 Sum_probs=52.5
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~ 221 (238)
+....+..|+++.|.|.+.+ |.+.+.|++ ++.++.... .. ....++.|.|.++..+|+|.|+|.+.+..
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~-ng~~i~~~~-----~r-~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKF-DGKVLTPES-----AK-YLLYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEE-CCEECCCCC-----ce-EEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 34567889999999999864 678999999 565553211 12 23445679999999999999999999764
No 179
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.15 E-value=9.9e-10 Score=71.08 Aligned_cols=85 Identities=14% Similarity=0.315 Sum_probs=58.8
Q ss_pred eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--ee--eeeee-eEeec
Q psy7941 12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--AV--LAIHE-HVITN 86 (238)
Q Consensus 12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~~--~~~~~-~~~~~ 86 (238)
..++..+.+.+|+++.|.|.+.... ...+.||+.... .. ..... .....
T Consensus 2 ~q~~~~v~~~~G~~v~L~C~~~~~~--------------------------~~~v~W~k~~~~~~~~~l~~~~~~~~~~~ 55 (109)
T cd04983 2 TQSPQSLSVQEGENVTLNCNYSTST--------------------------FYYLFWYRQYPGQGPQFLIYISSNGEEKE 55 (109)
T ss_pred eecCCceEEcCCCCEEEEEEECCCC--------------------------ccEEEEEEECCCCCeEEEEEEecCCCccc
Confidence 3567788999999999999997432 345999986422 11 11100 00124
Q ss_pred CccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 87 NARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 87 ~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
.+|+.+... ....++|.|.+++.+|+|.|+|.+.+.
T Consensus 56 ~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~ 92 (109)
T cd04983 56 KGRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSES 92 (109)
T ss_pred CCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEecC
Confidence 567776543 347889999999999999999999654
No 180
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.15 E-value=2.3e-10 Score=69.91 Aligned_cols=65 Identities=15% Similarity=0.281 Sum_probs=46.8
Q ss_pred ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEc
Q psy7941 16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHN 95 (238)
Q Consensus 16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (238)
....+.+|++++|+|.+.. +.+..++.|+|++..+.. .
T Consensus 7 p~~~V~~G~~vtL~C~~~~-------------------------~~~~~~~~w~k~g~~~~~-------~---------- 44 (83)
T cd05753 7 PSRVVFEGEPLVLRCHGWK-------------------------NKPVYKVTYYRDGKAKKY-------S---------- 44 (83)
T ss_pred CcceecCCCCEEEEeeCCC-------------------------CCcceEEEEEECCeEccc-------c----------
Confidence 3447889999999999742 122446999997653210 0
Q ss_pred CCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941 96 DANTWTLNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 96 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
.....|.|.+++.+|+|.|+|.+.+..
T Consensus 45 -~~~~~l~I~~~~~~dsG~Y~C~~~~~~ 71 (83)
T cd05753 45 -HSNSNLSIPQATLSDSGSYHCSGIIGS 71 (83)
T ss_pred -CCCceEEECccCHHHCEEEEEEEEeCC
Confidence 011289999999999999999997754
No 181
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.14 E-value=2.9e-10 Score=67.51 Aligned_cols=52 Identities=25% Similarity=0.367 Sum_probs=35.5
Q ss_pred CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
+.|.|.+.|++++..+.. .+.... ....+|.|.+++.+|+|.|+|.+.|...
T Consensus 9 g~P~p~v~W~k~~~~~~~----------~~~~~~---~~~~~L~i~~v~~~D~G~Y~C~a~N~~G 60 (71)
T cd05731 9 GLPTPEISWIKIGGELPA----------DRTKFE---NFNKTLKIDNVSEEDDGEYRCTASNSLG 60 (71)
T ss_pred EecCCeEEEEECCeECCC----------CceeEe---cCCCEEEECCCCHHHCEEEEEEEEeCCc
Confidence 356788999998764321 111111 1122899999999999999999988643
No 182
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.14 E-value=3.9e-10 Score=69.86 Aligned_cols=72 Identities=24% Similarity=0.277 Sum_probs=56.2
Q ss_pred CCceeecCCCcEEEEEE-EccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCe-EEEEEeeeCCC
Q psy7941 145 SGDMMVPEGGSAKLVCK-AKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG-AYQCIAANGVP 222 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~-~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g 222 (238)
...+.+.+|+.+.|.|. ..|+|.|.+.|+.++...+. ...+.....++.|.|.++..+|+| .|.|.|.|...
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~------~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHIT------QDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCcccc------ccccEEECCCceEEEEEEehhhCCCCeEEEEEcccc
Confidence 35577899999999997 58999999999974433222 123444445679999999999999 89999999874
No 183
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.14 E-value=6.7e-10 Score=69.02 Aligned_cols=84 Identities=21% Similarity=0.307 Sum_probs=56.3
Q ss_pred eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeee-CCCCCcc
Q psy7941 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN-GVPPTVS 226 (238)
Q Consensus 148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n-~~g~~~~ 226 (238)
+...+|+.+.|.|.. +.|.|.+.|++.++.......... ........+.|.|.++..+|+|.|+|.+.+ ..+.. .
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~--~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~-~ 81 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKT--EERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQT-L 81 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccc--cccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEE-E
Confidence 457789999999996 478899999984322111000000 111223445799999999999999999985 55533 5
Q ss_pred ceEEEEEEe
Q psy7941 227 KRLMLHVHC 235 (238)
Q Consensus 227 ~~~~l~V~~ 235 (238)
..++|.|..
T Consensus 82 ~~~~l~v~~ 90 (91)
T cd05871 82 AKYTLHVIE 90 (91)
T ss_pred EEEEEEEec
Confidence 577787764
No 184
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.13 E-value=7.6e-10 Score=68.11 Aligned_cols=81 Identities=26% Similarity=0.382 Sum_probs=53.5
Q ss_pred CCcEEEEEEEcccc--CCeEEEEeCCCeeeEeecCCC--CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccce
Q psy7941 153 GGSAKLVCKAKGYP--TPKITWRREDNKEIIVRSNPP--SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKR 228 (238)
Q Consensus 153 g~~~~l~C~~~~~p--~~~~~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~ 228 (238)
|+.+.|.|.+.+.+ ...+.|...+........... ..........+.|.|.+++.+|+|.|+|.|.|..| ....+
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~-~~~~~ 79 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQM-IAKNS 79 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecce-Eeccc
Confidence 67899999998755 448899875543211110000 00000112345899999999999999999999888 44777
Q ss_pred EEEEEE
Q psy7941 229 LMLHVH 234 (238)
Q Consensus 229 ~~l~V~ 234 (238)
..|.|+
T Consensus 80 t~~~V~ 85 (86)
T cd05862 80 TIVIVH 85 (86)
T ss_pred EEEEEe
Confidence 777775
No 185
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.13 E-value=8.2e-10 Score=66.31 Aligned_cols=57 Identities=11% Similarity=0.145 Sum_probs=39.1
Q ss_pred cCCCCceEEEEeCCceeeeeeeeeEeecCccEE----EEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 59 TDSSAMKVAWIKADTKAVLAIHEHVITNNARLS----VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 59 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
.++|.|.++|+|++..+.. +.++. ..........|.|.++..+|+|.|+|.|.|..+
T Consensus 8 ~G~P~Pti~W~kng~~l~~---------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G 68 (79)
T cd05855 8 KGNPKPTLQWFHEGAILNE---------SEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYG 68 (79)
T ss_pred eEeCCCceEEEECCEECCC---------CcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCc
Confidence 4578999999998766432 11111 111112344899999999999999999988643
No 186
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.13 E-value=7.4e-10 Score=71.73 Aligned_cols=83 Identities=17% Similarity=0.318 Sum_probs=57.4
Q ss_pred eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeeeee-e-E--
Q psy7941 12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAIHE-H-V-- 83 (238)
Q Consensus 12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~~~-~-~-- 83 (238)
...|..+.+.+|++++|.|.+.. . ...+.|||.... + +..... . .
T Consensus 2 ~Q~p~~~~v~~G~~v~l~C~~~~-~--------------------------~~~v~Wykq~~g~~~~~l~~~~~~~~~~~ 54 (110)
T cd05899 2 TQSPRYLIKGRGQSVTLRCSQTS-G--------------------------HDNMYWYRQDPGKGLQLLFYSNGGSLNEE 54 (110)
T ss_pred EECCCceEEcCCCcEEEEEEECC-C--------------------------CCEEEEEEECCCCCcEEEEEEcCCCceEe
Confidence 35677889999999999999864 2 235999996431 1 111100 0 0
Q ss_pred -eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941 84 -ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121 (238)
Q Consensus 84 -~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 121 (238)
....+||.........++|.|.+++.+|+|.|+|.+..
T Consensus 55 ~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~ 93 (110)
T cd05899 55 EGDPKDRFSASRPSLTRSSLTIKSAEPEDSAVYLCASSL 93 (110)
T ss_pred cCccCCceEEECcCCCccEEEECCCChhhCEEEEEEeeC
Confidence 11245777665444677999999999999999999854
No 187
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.12 E-value=7.3e-10 Score=67.20 Aligned_cols=60 Identities=23% Similarity=0.430 Sum_probs=38.4
Q ss_pred CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
+.|.|.+.|+++++...... .......+++..... .+|.|.+++.+|+|.|.|.+.|..+
T Consensus 9 G~P~P~v~W~~~~~~~~~~~-~~~~~~~~r~~~~~~----~~L~I~~v~~~D~G~Y~C~a~N~~G 68 (79)
T cd05734 9 GYPPPTIVWKHSKGRGHPQH-THTCCLAGRIQLLSN----GSLLIKHVLEEDSGYYLCKVSNDVG 68 (79)
T ss_pred EeCCCEEEEEECCCcccccc-ccccccCCCEEEecC----CeEEECcCCcccCEEEEEEEEeCCC
Confidence 45678899999754321110 000112344544322 3899999999999999999988643
No 188
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.12 E-value=6.1e-10 Score=69.49 Aligned_cols=78 Identities=18% Similarity=0.296 Sum_probs=53.4
Q ss_pred cceeccCceeEEEec---CCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 9 PDFLYPLENVTIAQG---RDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 9 p~~~~~~~~~~v~~g---~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
|.|...+..+.+..+ .++.|.|.+. ++|.+.++|++++..+...
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~--------------------------g~p~p~i~W~k~~~~l~~~------- 48 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRAR--------------------------GSPPPTYRWLMNGTEIDDE------- 48 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeee--------------------------EcCCCEEEEEECCEECCCC-------
Confidence 677777777765444 5799999985 3457789999976543211
Q ss_pred cCccEEEEEcCCCeEEEEEcccCc-ccCeEEEEEEecCCC
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRR-EDRGYYMCQVNTNPM 124 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~~~~~ 124 (238)
...++..... .|.|.++.. +|+|.|+|.+.|...
T Consensus 49 ~~~~~~~~~~-----~L~i~~~~~~~d~G~Y~C~a~N~~G 83 (91)
T cd04967 49 PDSRYSLVGG-----NLVISNPSKAKDAGRYQCLASNIVG 83 (91)
T ss_pred CCCCEEEECC-----EEEEecCCccCCCEEEEEEEEcCCC
Confidence 1223333222 788988874 899999999987644
No 189
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.12 E-value=6.7e-10 Score=68.42 Aligned_cols=71 Identities=23% Similarity=0.360 Sum_probs=51.9
Q ss_pred eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEE
Q psy7941 12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLS 91 (238)
Q Consensus 12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 91 (238)
...|..+.+.+|+++.|.|.+.. +.|.+.+.|++++..+.. +..
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~-------------------------~~~~~~i~W~~~~~~~~~-----------~~~ 48 (85)
T cd05754 5 VEEPRSQEVRPGADVSFICRAKS-------------------------KSPAYTLVWTRVGGGLPS-----------RAM 48 (85)
T ss_pred ecCCCceEEcCCCCEEEEEEcCC-------------------------CCCCcEEEEEECCCcCCC-----------ccc
Confidence 35677888999999999999853 124667999998754211 000
Q ss_pred EEEcCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941 92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 92 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
.....|.|.+++.+|+|.|.|.+.|..
T Consensus 49 -----~~~~~L~I~~v~~~DsG~Y~C~a~n~~ 75 (85)
T cd05754 49 -----DFNGILTIRNVQLSDAGTYVCTGSNML 75 (85)
T ss_pred -----ccCCEEEECCCCHHHCEEEEEEEeccC
Confidence 012289999999999999999997753
No 190
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.12 E-value=6.3e-10 Score=65.64 Aligned_cols=50 Identities=28% Similarity=0.421 Sum_probs=35.8
Q ss_pred CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
+.|+|.+.|+|++..+... ..++.... .+|.|.+++.+|+|.|+|.+.+.
T Consensus 9 g~P~P~v~W~kdg~~l~~~--------~~~~~~~~-----~~L~I~~v~~~D~G~YtC~a~~~ 58 (72)
T cd07702 9 AFPAPEVIWLKDGLPAAEK--------CSRYHVDG-----YSLVIKDVTEEDAGIYTILLGIK 58 (72)
T ss_pred EcCCCeEEEEECCEECCCC--------CcEEEeCC-----CEEEECcCCHHHCEEEEEEEEcc
Confidence 4678889999987653211 12222211 28999999999999999999775
No 191
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=99.11 E-value=2.4e-09 Score=68.08 Aligned_cols=45 Identities=24% Similarity=0.460 Sum_probs=31.2
Q ss_pred ccEEEEEc--CCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEE
Q psy7941 88 ARLSVTHN--DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV 133 (238)
Q Consensus 88 ~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v 133 (238)
+|+.+... ..+.++|.|.+++.+|+|.|+|.+.+.... ..+.+.+
T Consensus 51 ~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~-~~~~i~l 97 (100)
T cd05713 51 GRTELLKDAIAEGSVALRIHNVRASDEGLYTCFFQSDGFY-EEATVEL 97 (100)
T ss_pred ceEEeecccccCCcEEEEEEcCChhhCEEEEEEEecCCcE-EEEEEEE
Confidence 45554332 235679999999999999999999865433 4444443
No 192
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.11 E-value=1.7e-09 Score=67.22 Aligned_cols=84 Identities=23% Similarity=0.358 Sum_probs=52.7
Q ss_pred ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEc
Q psy7941 16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHN 95 (238)
Q Consensus 16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (238)
..+.+.+|+++.|.|... .|.+.+.||+++...... .......++.....
T Consensus 4 ~~~~~~eG~~v~L~C~~~---------------------------~p~p~v~Wykq~~g~~~~---~~~~~~~r~~~~~~ 53 (91)
T cd05871 4 KVVYGVENNSTFLECLPK---------------------------SPQASVKWLFQRGGDQRK---EEVKTEERLIHTER 53 (91)
T ss_pred eEEEEecCCcEEEEEECC---------------------------CCCceEEEEEECCCCCcc---ccccccccEEEecC
Confidence 456788999999999952 235679999854321110 00112334443322
Q ss_pred CCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEE
Q psy7941 96 DANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVV 134 (238)
Q Consensus 96 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~ 134 (238)
.|.|.+++.+|+|.|.|.+.+... ....+.|.|.
T Consensus 54 -----~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~v~ 89 (91)
T cd05871 54 -----GLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLHVI 89 (91)
T ss_pred -----eEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEEEe
Confidence 799999999999999999975332 2334445543
No 193
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.11 E-value=4.6e-10 Score=69.56 Aligned_cols=78 Identities=19% Similarity=0.476 Sum_probs=57.9
Q ss_pred cceec-cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941 9 PDFLY-PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN 87 (238)
Q Consensus 9 p~~~~-~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 87 (238)
|.|.. ..+.+.|.+|+.+.|.|... .+.|.|.+.|++++...+ ..+
T Consensus 3 ~~~~~~~~~~v~V~eG~~~~L~C~pP-------------------------~g~P~P~i~W~~~~~~~i--------~~~ 49 (95)
T cd05845 3 PKWPKEKIRPVEVEEGDSVVLPCNPP-------------------------KSAVPLRIYWMNSDLLHI--------TQD 49 (95)
T ss_pred CcCCccccceeEEecCCCEEEEecCC-------------------------CCCCCCEEEEECCCCccc--------ccc
Confidence 55553 45788999999999999852 456688999998654322 234
Q ss_pred ccEEEEEcCCCeEEEEEcccCcccCe-EEEEEEecCC
Q psy7941 88 ARLSVTHNDANTWTLNIRSVRREDRG-YYMCQVNTNP 123 (238)
Q Consensus 88 ~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~ 123 (238)
.|+.+... .+|.|.+++.+|.| .|.|.+.+..
T Consensus 50 ~Ri~~~~~----GnL~fs~v~~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 50 ERVSMGQN----GNLYFANVEEQDSHPDYICHAHFPG 82 (95)
T ss_pred ccEEECCC----ceEEEEEEehhhCCCCeEEEEEccc
Confidence 56655443 39999999999999 8999997653
No 194
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.11 E-value=7.7e-10 Score=67.25 Aligned_cols=72 Identities=29% Similarity=0.564 Sum_probs=56.2
Q ss_pred eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccc
Q psy7941 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSK 227 (238)
Q Consensus 148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~ 227 (238)
..+..|+.+.|.|.+.+.|.+.+.|++ ++..+... ...+.+..+..+|.|.|+|.+.+..+...+.
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~-~~~~~~~~-------------~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~ 74 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYK-NGSPINSS-------------QNGLFIPNVSPEDSGNYTCRASNGSGSNTST 74 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEE-TTEEEEEE-------------SSEEEESSEEGGGTEEEEEEEEETTEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeee-eeeeeeee-------------eeeeeeeeeccccCEEEEEEEEeCCCCeEee
Confidence 457889999999999998889999999 55444311 1126677889999999999999977656677
Q ss_pred eEEEEE
Q psy7941 228 RLMLHV 233 (238)
Q Consensus 228 ~~~l~V 233 (238)
++.|.|
T Consensus 75 ~~~v~V 80 (80)
T PF13895_consen 75 SVNVTV 80 (80)
T ss_dssp EEEEEE
T ss_pred eEEeeC
Confidence 777765
No 195
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.10 E-value=8.4e-10 Score=63.56 Aligned_cols=63 Identities=35% Similarity=0.678 Sum_probs=48.2
Q ss_pred CCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 152 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
+|+.+.|.|.+.+.|.+.+.|++ ++..+.. ..........|.|.++...|.|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~-~~~~~~~-------~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLK-DGKPLPE-------SNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEE-CCEECCC-------CCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 47889999998888899999999 4433320 112233445799999999999999999998765
No 196
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.09 E-value=2.7e-09 Score=65.65 Aligned_cols=72 Identities=21% Similarity=0.396 Sum_probs=49.4
Q ss_pred eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcC
Q psy7941 17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHND 96 (238)
Q Consensus 17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (238)
.+.+..|+++.|.|.+.. .|.+.+.|++++..+.. ...+......
T Consensus 3 ~~~~~~G~~~~l~C~~~~--------------------------~p~~~v~W~k~~~~~~~---------~~~~~~~~~~ 47 (85)
T cd05729 3 LHAVPAGSTVRLKCPASG--------------------------NPRPTITWLKDGKPFKK---------EHRIGGYKVR 47 (85)
T ss_pred eeEecCCCcEEEEEEcCC--------------------------CCCCeEEEEECCEECcc---------cCceeEEEcc
Confidence 456778999999999853 34667999998654321 1111111112
Q ss_pred CCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941 97 ANTWTLNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 97 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
...+.|.|.++..+|+|.|.|.+.+..
T Consensus 48 ~~~~~l~i~~~~~~d~g~Y~C~~~n~~ 74 (85)
T cd05729 48 KKKWTLILESVVPSDSGKYTCIVENKY 74 (85)
T ss_pred CcEEEEEEeECCcccCEEEEEEEEECC
Confidence 233489999999999999999997753
No 197
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.09 E-value=2.1e-09 Score=65.20 Aligned_cols=69 Identities=6% Similarity=0.037 Sum_probs=41.9
Q ss_pred cCCCCceEEEEeCCceeeeeeeeeEeecCccEEEE--EcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEE
Q psy7941 59 TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT--HNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV 133 (238)
Q Consensus 59 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v 133 (238)
.+.|.|.++|+|++..+....... ..+... ........|.|.+++.+|+|.|+|.+.|..+ .....+.|
T Consensus 8 ~G~P~P~v~W~k~g~~i~~~~~~~-----~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G-~~~~~~~~ 78 (81)
T cd04971 8 RGNPKPTLTWYHNGAVLNESDYIR-----TEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYG-QDSKSISA 78 (81)
T ss_pred EeeCCCcEEEEECCEECcCCCcee-----EEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCC-CeeeEEEe
Confidence 356789999999876543211000 000000 0112344899999999999999999988643 23334444
No 198
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.09 E-value=1.8e-09 Score=64.98 Aligned_cols=64 Identities=23% Similarity=0.392 Sum_probs=41.8
Q ss_pred CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEE
Q psy7941 60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEV 133 (238)
Q Consensus 60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 133 (238)
+.|.|.+.|+|++..+... ...++..... ...|.|.+++.+|.|.|+|.+.|. +.....+.|.|
T Consensus 9 g~P~p~v~W~k~~~~l~~~-------~~~~~~~~~~---~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (76)
T cd05736 9 GIPLPRLTWLKNGMDITPK-------LSKQLTLIAN---GSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFV 73 (76)
T ss_pred ecCCCEEEEEECCEECCCC-------CCccEEEeCC---CCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEE
Confidence 3457789999987654211 1223333221 127999999999999999999876 33444555555
No 199
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.07 E-value=9.5e-10 Score=68.31 Aligned_cols=74 Identities=20% Similarity=0.412 Sum_probs=52.6
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEE
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT 93 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (238)
..+.+.+.+|+.+.|.|... .+.|.+.+.|++++...... .+.|..+.
T Consensus 9 ~~~~~~v~eG~~~~L~C~pP-------------------------~g~P~p~~~W~k~~~~~~~~-------~d~r~~~~ 56 (96)
T cd05727 9 ERDEVKVKEGWGVVLFCDPP-------------------------PHYPDLSYRWLLNEFPNFIP-------EDGRRFVS 56 (96)
T ss_pred CcCceeeeeCCcEEEeeCCC-------------------------CCCCCCEEEEEECCcccccc-------cCCCeEEe
Confidence 34566789999999999863 45668899999986442211 12222222
Q ss_pred EcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 94 HNDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 94 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
. .+.+|.|.+++.+|+|.|+|.+.+.
T Consensus 57 ~---~~G~L~fs~v~~~D~g~Y~C~A~n~ 82 (96)
T cd05727 57 Q---TNGNLYIAKVEASDRGNYSCFVSSP 82 (96)
T ss_pred C---CCCcEEEeecCHhhCceeEEEEEec
Confidence 2 1239999999999999999999774
No 200
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.06 E-value=2.8e-09 Score=66.32 Aligned_cols=87 Identities=20% Similarity=0.327 Sum_probs=60.3
Q ss_pred CceeecCCCcEEEEEEEccccCCe-EEEEeCCCeeeEeecCCCCCcc--eEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 146 GDMMVPEGGSAKLVCKAKGYPTPK-ITWRREDNKEIIVRSNPPSSQK--VFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
..+.+.+|+++.|.|.+.++|.|. +.|.+++.. +........... ....-.+.|.+.++..++.|.|+|.|.|..+
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~-l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~ 89 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRT-LTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDA 89 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcc-cCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence 446789999999999999999996 999985432 211111000000 0011235799999999999999999999988
Q ss_pred CCccceEEEEEE
Q psy7941 223 PTVSKRLMLHVH 234 (238)
Q Consensus 223 ~~~~~~~~l~V~ 234 (238)
..+.++.|.|+
T Consensus 90 -~~s~tF~l~v~ 100 (101)
T cd05860 90 -SASVTFNVYVN 100 (101)
T ss_pred -eEEEEEEEEEe
Confidence 33666666664
No 201
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.05 E-value=4.3e-09 Score=61.03 Aligned_cols=64 Identities=30% Similarity=0.447 Sum_probs=42.5
Q ss_pred cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEE
Q psy7941 23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTL 102 (238)
Q Consensus 23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 102 (238)
|+++.|.|.+.. ..+...+.|++++.................. ...|
T Consensus 1 G~~v~L~C~~~~-------------------------~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~--------~~~L 47 (64)
T PF00047_consen 1 GSSVTLTCSVSS-------------------------GPPPTTVTWSKNGQSLPEGSTTNRSTNSVSS--------TSRL 47 (64)
T ss_dssp TSEEEEEEEEEE-------------------------SSSTSEEEEEETTTTTSEEEEEEEEETTTEE--------EEEE
T ss_pred CCeEEEEeecCC-------------------------CCCCcEEEEEECCccccCcceeEeeccccee--------eeEE
Confidence 789999999921 2235579999987765443322221111110 0049
Q ss_pred EEcccCcccCeEEEEEE
Q psy7941 103 NIRSVRREDRGYYMCQV 119 (238)
Q Consensus 103 ~i~~~~~~d~G~Y~C~~ 119 (238)
.|.+++.+|+|.|+|.|
T Consensus 48 ~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 48 TISNVTPEDSGTYTCVV 64 (64)
T ss_dssp EESSCTGGGTEEEEEEE
T ss_pred EEccCCHHHCEEEEEEC
Confidence 99999999999999986
No 202
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.04 E-value=4.4e-09 Score=76.54 Aligned_cols=90 Identities=20% Similarity=0.370 Sum_probs=62.0
Q ss_pred EEEecCCEEEEeEEecCCCceeeeeeeeee--------eecCCeEEeccC--------CCCceEEEEeCCceeeeeeeee
Q psy7941 19 TIAQGRDAIFTCVVNNLGGHRVSSSVTDTH--------VNTGGSIVFPTD--------SSAMKVAWIKADTKAVLAIHEH 82 (238)
Q Consensus 19 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~--------~~~~~~~W~~~~~~~~~~~~~~ 82 (238)
.+...|++.|.|.++|..+. ...++.+.+ +..|+.+.+.|. .|.|.++|+|++..+..
T Consensus 104 ~v~~~DsG~Y~C~a~N~~~~-~~~~i~L~V~~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~----- 177 (227)
T PHA02826 104 NVINIDEGIYICTISSGNIC-EESTIRLTFDSGTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLY----- 177 (227)
T ss_pred CCChHHCEEEEEEEEECCcc-eEEEEEEEEecCCccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCC-----
Confidence 46788999999999996544 233333332 345777777764 35789999998765421
Q ss_pred EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941 83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121 (238)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 121 (238)
+.++.+... ..+|.|.+++.+|+|.|+|.+..
T Consensus 178 ----~~r~~~~~~---~~~L~I~~V~~~DsG~YtC~a~~ 209 (227)
T PHA02826 178 ----TDRIQLRNN---NSTLVIKSATHDDSGIYTCNLRF 209 (227)
T ss_pred ----CCCEEEeCC---CCEEEECcCCHHhCEEEEEEEEE
Confidence 234433321 12899999999999999999965
No 203
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=99.04 E-value=4.4e-09 Score=68.83 Aligned_cols=85 Identities=18% Similarity=0.356 Sum_probs=57.8
Q ss_pred ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeeeee-eE----
Q psy7941 13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAIHE-HV---- 83 (238)
Q Consensus 13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~~~-~~---- 83 (238)
..+..+.+.+|+++.|.|.+.+.. .+.+.+.||+.... . +..... ..
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~------------------------~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~ 58 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGID------------------------FSTTYIHWYRQKPGQALERLLYVSSTSTQRKL 58 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCC------------------------ccccEEEEEEECCCCCCEEEEEEecCCCcEEe
Confidence 467788899999999999986520 12346999996321 1 111110 00
Q ss_pred -eecCccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEec
Q psy7941 84 -ITNNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVNT 121 (238)
Q Consensus 84 -~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~~ 121 (238)
.....||.+..... ..++|.|.+++.+|+|.|.|.+..
T Consensus 59 ~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 59 SGGTKNKFEARKDVGKSTSTLTIQNLEKEDSATYYCAYWE 98 (116)
T ss_pred CcccCCCEEEEEECCCCEEEEEEEECCHHHCEEEEEEEec
Confidence 11246787766544 678999999999999999998853
No 204
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=99.03 E-value=3e-09 Score=68.39 Aligned_cols=85 Identities=19% Similarity=0.329 Sum_probs=56.4
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eeeeeee-Eee
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLAIHEH-VIT 85 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~~~~~-~~~ 85 (238)
+...|..+.+.+|++++|.|.+.+..+ ...+.|||... .. +...... ...
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~-------------------------~~~~~Wyrq~~g~~~~~l~~~~~~~~~~ 57 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVS-------------------------SNYLAWYQQKPGQAPKLLIYGASTLASG 57 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCC-------------------------CCcEEEEEECCCCCcEEEEECccccCCC
Confidence 456778889999999999999864321 23489998642 11 1111110 111
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 121 (238)
...|+.... ....+.|.|.+++.+|+|.|.|.+.+
T Consensus 58 ~~~r~~~~~-~~~~~~L~I~~~~~~Dsg~Y~Ca~~~ 92 (106)
T cd04980 58 TPSRFSGSG-SGTDFTLTISRVEPEDAAVYYCQQYG 92 (106)
T ss_pred CCCCEEEec-cCCEEEEEECCCChHHCEEEEEEEeC
Confidence 235676643 34667899999999999999998843
No 205
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.03 E-value=3.4e-09 Score=65.90 Aligned_cols=71 Identities=17% Similarity=0.227 Sum_probs=48.8
Q ss_pred eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcC
Q psy7941 17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHND 96 (238)
Q Consensus 17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (238)
...+.+|.++.|.|....... ...|.+.+.|+|++..+.. ..+. ..
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~---------------------~~~~~p~i~Wyk~~~~i~~---------~~~~-~~--- 49 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFK---------------------NENTLPPVQWYKDCKLLEG---------DRKR-FV--- 49 (92)
T ss_pred eEEEeeccCCEEECCChHHcc---------------------CCCCCCcEEEeECCEECCC---------CccE-Ee---
Confidence 345789999999998643110 1235778999998765421 1111 11
Q ss_pred CCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 97 ANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 97 ~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
....|.|.+++.+|+|.|+|.+.+.
T Consensus 50 -~~~~L~I~~v~~~DsG~YtC~~~n~ 74 (92)
T cd05757 50 -KGSKLLIQNVTEEDAGNYTCKLTFT 74 (92)
T ss_pred -cCCEEEEeeCChhhCEEEEEEEEec
Confidence 1229999999999999999999764
No 206
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=99.02 E-value=3.1e-09 Score=67.02 Aligned_cols=81 Identities=17% Similarity=0.325 Sum_probs=49.7
Q ss_pred EecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee----eeEeecC----ccEEE
Q psy7941 21 AQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH----EHVITNN----ARLSV 92 (238)
Q Consensus 21 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~----~~~~~~~----~~~~~ 92 (238)
..|++++|+|..... .. ...+.|++.......... ....... .|+.+
T Consensus 2 ~~G~sVtL~c~~~~~--~~-----------------------~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~ 56 (97)
T cd05775 2 ILGGSVTLPLNIPDG--TE-----------------------IESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNF 56 (97)
T ss_pred ccCCeEEEeCCCCCC--cE-----------------------EEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEe
Confidence 469999999987531 11 225899997543332221 1111112 23333
Q ss_pred EEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceee
Q psy7941 93 THNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMA 129 (238)
Q Consensus 93 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 129 (238)
....++|.|.+++.+|+|.|.|.+..........
T Consensus 57 ---~~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~ 90 (97)
T cd05775 57 ---SQNDYSLQISNLKMEDAGSYRAEINTKNGVTITK 90 (97)
T ss_pred ---cCCceeEEECCCchHHCEEEEEEEEcCCCCeEEE
Confidence 3346799999999999999999997654433333
No 207
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.01 E-value=6e-09 Score=66.91 Aligned_cols=81 Identities=21% Similarity=0.435 Sum_probs=54.1
Q ss_pred eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeeeeee----EeecCcc
Q psy7941 18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAIHEH----VITNNAR 89 (238)
Q Consensus 18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~~~~----~~~~~~~ 89 (238)
+.+.+|++++|.|.+.+.. +...+.|++.... . +...... .....+|
T Consensus 1 ~~v~~G~~v~L~C~~~~~~-------------------------~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r 55 (105)
T cd00099 1 LSVSEGESVTLSCTYSGSF-------------------------SSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGR 55 (105)
T ss_pred CeecCCCCEEEEEEEeCCc-------------------------CcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCc
Confidence 3578999999999997540 1345899996431 1 1111110 1123456
Q ss_pred EEEEEcCC-CeEEEEEcccCcccCeEEEEEEecCC
Q psy7941 90 LSVTHNDA-NTWTLNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 90 ~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
+.+..... ..++|.|.+++.+|+|.|.|.+.+..
T Consensus 56 ~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~ 90 (105)
T cd00099 56 FSGTRDSSKSSFTLTISSLQPEDSAVYYCAVSLSG 90 (105)
T ss_pred EEEEEeccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence 76665443 67899999999999999999996544
No 208
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.01 E-value=1.4e-08 Score=63.57 Aligned_cols=83 Identities=16% Similarity=0.269 Sum_probs=56.4
Q ss_pred cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCc
Q psy7941 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNA 88 (238)
Q Consensus 9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ 88 (238)
|.++.+.....+.+|+++.|.|.+...+ ++..+.|...+..+.. ....
T Consensus 2 pP~i~~~~s~~~~~G~~~~L~C~~~s~P-------------------------~P~~i~W~w~~~~i~~-------~~~~ 49 (98)
T cd05898 2 PPIISSEQVQYAVRGERGKVKCFIGSTP-------------------------PPDRIAWAWKENVLES-------GTSE 49 (98)
T ss_pred CCEEecCceEEEeCCCcEEEEEEEccCC-------------------------CCcEEEEEEccccccC-------CCCC
Confidence 3445788888999999999999994221 1235677775442211 1134
Q ss_pred cEEEEEcC---CCeEEEEEcccCccc-CeEEEEEEecCC
Q psy7941 89 RLSVTHND---ANTWTLNIRSVRRED-RGYYMCQVNTNP 123 (238)
Q Consensus 89 ~~~~~~~~---~~~~~L~i~~~~~~d-~G~Y~C~~~~~~ 123 (238)
|+.+.... .....|.|.++..+| .|.|.|.+.|.-
T Consensus 50 r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~ 88 (98)
T cd05898 50 RYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSF 88 (98)
T ss_pred CEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCC
Confidence 66665432 345589999998877 799999998753
No 209
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.01 E-value=4.6e-09 Score=63.21 Aligned_cols=57 Identities=18% Similarity=0.327 Sum_probs=35.3
Q ss_pred cCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCc----ccCeEEEEEEecCCCc
Q psy7941 59 TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRR----EDRGYYMCQVNTNPMT 125 (238)
Q Consensus 59 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~~~~~~~~ 125 (238)
.++|.|+++|+|++..+... .+.++..... ..+|.|..+.. .|.|.|+|.+.|..+.
T Consensus 8 ~G~P~P~i~W~k~g~~l~~~-------~~~~~~~~~~---~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~ 68 (77)
T cd05874 8 KGKPPPSFSWTRNGTHFDID-------KDPKVTMKPN---TGTLVINIMNGEKAEAYEGVYQCTARNERGA 68 (77)
T ss_pred cccCCCeEEEEECCeECCCc-------CCCCEEEeCC---CceEEEeccccCCCCCCCEEEEEEEEcCCCe
Confidence 45678999999987654211 1223332211 12677766654 4789999999886543
No 210
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=99.00 E-value=1.4e-08 Score=65.26 Aligned_cols=81 Identities=20% Similarity=0.318 Sum_probs=49.8
Q ss_pred ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce---e-e-eeee-e--eE-eecCccEEE
Q psy7941 22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK---A-V-LAIH-E--HV-ITNNARLSV 92 (238)
Q Consensus 22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~---~-~-~~~~-~--~~-~~~~~~~~~ 92 (238)
.|++++|.|.+....... ......+.|+|.... . . .... . .. ....+|+.+
T Consensus 1 ~G~~vtL~C~~~~~~~~~--------------------~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~ 60 (106)
T cd05877 1 RGGNVTLPCRYHYEPELS--------------------APRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFL 60 (106)
T ss_pred CCCcEEEEeEeECCCcCC--------------------CCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEe
Confidence 489999999986431000 011346999996421 1 1 1110 0 00 112356666
Q ss_pred EEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 93 THNDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 93 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
.....+..+|.|.+++.+|+|.|.|.+.+.
T Consensus 61 ~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~ 90 (106)
T cd05877 61 RRAHDLDASLVITDLRLEDYGRYRCEVIDG 90 (106)
T ss_pred cCCCCCcEEEEEccCChHHCEEEEEEEEec
Confidence 544456779999999999999999999654
No 211
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.99 E-value=4.3e-09 Score=63.42 Aligned_cols=56 Identities=16% Similarity=0.306 Sum_probs=35.8
Q ss_pred cCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCc----ccCeEEEEEEecCCC
Q psy7941 59 TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRR----EDRGYYMCQVNTNPM 124 (238)
Q Consensus 59 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~~~~~~~ 124 (238)
.+.|.|.++|+|++..+... .+.++.... ...+|.|.++.. +|+|.|.|.+.|..+
T Consensus 8 ~G~P~P~v~W~k~g~~l~~~-------~~~~~~~~~---~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G 67 (77)
T cd05733 8 KGNPPPTFSWTRNGTHFDPE-------KDPRVTMKP---DSGTLVIDNMNGGRAEDYEGEYQCYASNELG 67 (77)
T ss_pred cccCCCeEEEEECCeECCCC-------CCCCEEEeC---CCCEEEEeccCCCCCcCCCEEEEEEEEcCCC
Confidence 35678899999987654221 122332221 122788887753 789999999988654
No 212
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.99 E-value=6.3e-09 Score=62.59 Aligned_cols=58 Identities=21% Similarity=0.278 Sum_probs=36.1
Q ss_pred cCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccC----cccCeEEEEEEecCCCcc
Q psy7941 59 TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVR----REDRGYYMCQVNTNPMTK 126 (238)
Q Consensus 59 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~----~~d~G~Y~C~~~~~~~~~ 126 (238)
.+.|.|.++|+|++..+... .+.++.+... ..+|.|.++. ..|+|.|.|.+.|..+..
T Consensus 8 ~G~P~P~v~W~k~g~~~~~~-------~~~~~~~~~~---~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05875 8 KGNPVPTFQWTRNGKFFNVA-------KDPRVSMRRR---SGTLVIDFSGGGRPEDYEGEYQCFARNNLGTA 69 (77)
T ss_pred cccCCCEEEEEECCEEccCc-------CCCcEEEeCC---CceEEEeccCCCCCCCCCEEEEEEEEeccceE
Confidence 35678899999987543111 1333433211 1278887764 246999999998875533
No 213
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.99 E-value=1.1e-08 Score=64.66 Aligned_cols=46 Identities=35% Similarity=0.432 Sum_probs=32.0
Q ss_pred ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEE
Q psy7941 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEV 133 (238)
Q Consensus 88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v 133 (238)
+|+.........++|.|.+++.+|+|.|.|.+..... ....+.|+|
T Consensus 49 ~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 49 RRRSITSLGLNSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred CeEEEcCCCCCccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence 3444444445677999999999999999999966433 333444554
No 214
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.98 E-value=1.7e-08 Score=65.68 Aligned_cols=86 Identities=22% Similarity=0.480 Sum_probs=57.0
Q ss_pred eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc---e-eee-e---eeeeE
Q psy7941 12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT---K-AVL-A---IHEHV 83 (238)
Q Consensus 12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~---~-~~~-~---~~~~~ 83 (238)
..++..+.+.+|+++.|.|.+. . .. ....+.|++... . .+. . .....
T Consensus 5 t~~~~~v~~~~G~~v~L~C~~~-~-~~-----------------------~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~ 59 (114)
T PF07686_consen 5 TQPPSPVTVQEGESVTLPCSYS-S-SS-----------------------NQSSVYWYRQSPGQGPQLIIRYSLSSTNET 59 (114)
T ss_dssp EEEESEEEEETTSEEEEEEEEE-S-SS-----------------------SGSEEEEEEEETTSEEEEEEEEETTEEEEE
T ss_pred EEeCCeEEEecCCCEEEEEEEe-C-CC-----------------------CcceEEEEEECccccceeeeeeccceeeec
Confidence 3457788999999999999997 1 11 133599999533 1 111 0 00111
Q ss_pred --eecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 84 --ITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 84 --~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
....+|+.+..+. ...++|.|.+++.+|+|.|.|.+...
T Consensus 60 ~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 60 PTPSYSGRFTFSGNGSQNNFSLTIKNLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp EETTETTTEEEEEETTTTEEEEEESSESGGGEEEEEEEEEES
T ss_pred cccceeeeeeeeecccCCeEEEEECCCCcCcCEEEEEEEEEC
Confidence 1123466555443 37889999999999999999999654
No 215
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.98 E-value=1.2e-08 Score=64.57 Aligned_cols=85 Identities=22% Similarity=0.413 Sum_probs=49.6
Q ss_pred CCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e-eeeee---eeEee--cCccEEEEEc
Q psy7941 24 RDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A-VLAIH---EHVIT--NNARLSVTHN 95 (238)
Q Consensus 24 ~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~-~~~~~---~~~~~--~~~~~~~~~~ 95 (238)
++++|.|.+....... ...+.|+|.... . ..... ...+. ...|..+...
T Consensus 1 ~~v~L~C~~~~~~~~~-----------------------~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~ 57 (98)
T cd05718 1 ESVTLECSFPVPGPVQ-----------------------ITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNS 57 (98)
T ss_pred CCEEEEeEeeCCCCce-----------------------EEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCC
Confidence 5789999987543211 335999996542 1 11000 00011 1334444433
Q ss_pred CCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEE
Q psy7941 96 DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFL 131 (238)
Q Consensus 96 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l 131 (238)
....++|.|.+++.+|+|.|.|.+...........+
T Consensus 58 ~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~ 93 (98)
T cd05718 58 SLEDATISISNLRLEDEGNYICEFATFPQGNRQKVT 93 (98)
T ss_pred CCCceEEEEccCCcccCEEEEEEEEeCCCCcEEEEE
Confidence 336679999999999999999998654333333333
No 216
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.98 E-value=2.4e-09 Score=66.55 Aligned_cols=80 Identities=20% Similarity=0.384 Sum_probs=54.5
Q ss_pred eecCCCcEEEEEEE-ccc----cCCeEEEEeCCCeeeEeecCCCCCcceEE-EeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 149 MVPEGGSAKLVCKA-KGY----PTPKITWRREDNKEIIVRSNPPSSQKVFS-VESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 149 ~~~~g~~~~l~C~~-~~~----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
.+..|.+..|.|.- .++ +.+.++|++ ++.++.... ..... .....|.|.++..+|+|.|+|.+.+..|
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYK-d~~~l~~~~-----~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~ 79 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYK-DSVLLDKDN-----EKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHE 79 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEcc-CCEECcCCC-----cceEecCCCCEEEEEEcChhhCEEEEEEEEEeeC
Confidence 45678889999973 333 567999999 565543211 11111 1234799999999999999999999875
Q ss_pred C---CccceEEEEEE
Q psy7941 223 P---TVSKRLMLHVH 234 (238)
Q Consensus 223 ~---~~~~~~~l~V~ 234 (238)
. ..++++.|.|.
T Consensus 80 g~~y~vtr~~~l~v~ 94 (95)
T cd05897 80 GKKYNITRIIKLRIV 94 (95)
T ss_pred CEEEEEEEEEEEEEc
Confidence 2 34566666653
No 217
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.97 E-value=1.8e-09 Score=67.14 Aligned_cols=75 Identities=15% Similarity=0.285 Sum_probs=50.2
Q ss_pred eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEee-------cCCCCCcceE------EEeeceEEEEEeecCCCeEEE
Q psy7941 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVR-------SNPPSSQKVF------SVESEVLSLTKVTRSEMGAYQ 214 (238)
Q Consensus 148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~-------~~~~~~~~~~------~~~~~~l~i~~~~~~d~G~y~ 214 (238)
+.+..|+++.|.|.+.+.+.+.+.|++++.+..... .......+.. ......|.|.++..+|+|.|+
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 356789999999999988899999996432221100 0000000100 111236999999999999999
Q ss_pred EEeeeCCC
Q psy7941 215 CIAANGVP 222 (238)
Q Consensus 215 C~~~n~~g 222 (238)
|.+.|..+
T Consensus 82 C~v~~~~~ 89 (94)
T cd07690 82 CEVEDKKE 89 (94)
T ss_pred EEECCccc
Confidence 99998765
No 218
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.97 E-value=7.4e-09 Score=67.70 Aligned_cols=86 Identities=17% Similarity=0.294 Sum_probs=58.5
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--eee-eee--eeEee
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--AVL-AIH--EHVIT 85 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~~~-~~~--~~~~~ 85 (238)
+...+..+.+.+|+++.|+|.+..... ...+.||+.... +.. ... .....
T Consensus 2 v~q~~~~v~~~~G~~v~L~C~~~~~~~-------------------------~~~v~Wyrq~~~~~~~~l~~~~~~~~~~ 56 (116)
T cd07706 2 VTQAQPDVSVQVGEEVTLNCRYETSWT-------------------------NYYIFWYKQLPSGEMTFLIRQKSIYGNA 56 (116)
T ss_pred cEEeCCceEEcCCCCEEEEEEEeCCCC-------------------------ceEEEEEEECCCCceEEEEEecCccCCc
Confidence 356677889999999999999864211 235899996322 111 110 01112
Q ss_pred cCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEec
Q psy7941 86 NNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNT 121 (238)
Q Consensus 86 ~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~ 121 (238)
.++|+.+... ....++|.|.+++.+|+|.|.|.+..
T Consensus 57 ~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~ 93 (116)
T cd07706 57 TKGRYSVNFQKAQKSISLTISALQLEDSAKYFCALST 93 (116)
T ss_pred cCCeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEEC
Confidence 2468887643 34678999999999999999999864
No 219
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.97 E-value=2.1e-08 Score=64.44 Aligned_cols=93 Identities=24% Similarity=0.348 Sum_probs=53.1
Q ss_pred ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--c--e-eeee-eeeeE---eecCccEEE
Q psy7941 22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--T--K-AVLA-IHEHV---ITNNARLSV 92 (238)
Q Consensus 22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~--~-~~~~-~~~~~---~~~~~~~~~ 92 (238)
.|++++|.|.+....... ....+.+.|++.. . . .... ..... .....|+..
T Consensus 1 ~G~~V~L~C~~~~~~~~~--------------------~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~ 60 (106)
T cd05714 1 LGGNVTLPCRFHLEPALS--------------------APHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPL 60 (106)
T ss_pred CCCCEEEeEEeECCcccC--------------------CCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEe
Confidence 489999999987532100 0114569999972 1 1 1111 11111 111223333
Q ss_pred EEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEE
Q psy7941 93 THNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVV 134 (238)
Q Consensus 93 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~ 134 (238)
.......++|+|.+++.+|+|.|.|.+.+... ......|.|.
T Consensus 61 ~~~~~~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 61 YPADPGDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred eCCCCCcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEE
Confidence 22344677999999999999999999976522 2334445543
No 220
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.97 E-value=1.2e-08 Score=64.59 Aligned_cols=81 Identities=22% Similarity=0.409 Sum_probs=53.5
Q ss_pred eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eeeeeeeEeecCccEEEE
Q psy7941 18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLAIHEHVITNNARLSVT 93 (238)
Q Consensus 18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~~~~~~~~~~~~~~~ 93 (238)
+.+.+|++++|+|.+.... ....+.|+|..... +...........+|+.+.
T Consensus 2 v~~~~G~~vtl~C~~~~~~-------------------------~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~ 56 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKN-------------------------RSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLT 56 (98)
T ss_pred EEEEeCCeEEEEeeCCCCC-------------------------CCcEeEeECCCCCCCCeEEECCCccccccCCCEEEE
Confidence 5688999999999986421 12358999975321 110111111224567665
Q ss_pred E-cCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941 94 H-NDANTWTLNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 94 ~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
. ...+.++|+|.+++.+|+|.|.|.+...+
T Consensus 57 ~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 87 (98)
T cd05716 57 DDPDNGVFTVTLNQLRKEDAGWYWCGVGDDG 87 (98)
T ss_pred ecCCCCEEEEEEcCCCHHHCEEEEEEcccCC
Confidence 3 33467899999999999999999986543
No 221
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.97 E-value=2.9e-08 Score=64.61 Aligned_cols=89 Identities=19% Similarity=0.350 Sum_probs=53.6
Q ss_pred ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC---ce--eeeeeee-eEeec
Q psy7941 13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD---TK--AVLAIHE-HVITN 86 (238)
Q Consensus 13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~---~~--~~~~~~~-~~~~~ 86 (238)
..+..+.+.+|++++|.|.+...... .....+.|++.. .. ....... .....
T Consensus 3 ~~~~~v~~~~G~~v~L~C~~s~~~~~----------------------~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~ 60 (115)
T cd05880 3 YTSKEVEAVNGTDVRLKCTFSSSAPI----------------------GDTLVITWNFRPLDGGREESVFYYHKRPYPPP 60 (115)
T ss_pred ecCceEEEEcCCCEEEEEEEEeCCCC----------------------CCcEEEEEEEECCCCCceeEEEEECCCccccC
Confidence 34678899999999999998642211 012358997531 11 1111111 10111
Q ss_pred C----ccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941 87 N----ARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 87 ~----~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
. .|+.... .....++|.|.+++.+|+|.|+|.+.+..
T Consensus 61 ~~~f~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~ 102 (115)
T cd05880 61 DGRFKGRVVWDGNIMRRDASILIWQLQPTDNGTYTCQVKNPP 102 (115)
T ss_pred cccccCeEEEecCCcCCceEEEEeeCChhhCEEEEEEEEeCC
Confidence 1 2333332 23356799999999999999999997643
No 222
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.97 E-value=8e-09 Score=61.95 Aligned_cols=57 Identities=18% Similarity=0.320 Sum_probs=37.0
Q ss_pred CCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 61 SSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 61 ~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
.|.+.+.|+|++..+...... ..+.+. ......+|.|.+++.+|+|.|+|.+.|...
T Consensus 11 ~P~p~~~W~k~g~~l~~~~~~------~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G 67 (75)
T cd05750 11 YPSLRFKWFKDGKELNRKNKP------RNIKIR-NKKKNSELQINKAKLADSGEYTCVVENILG 67 (75)
T ss_pred CCCceEEEEcCCeeccccCCc------ceEEEE-ecCceEEEEEccCCcccCeEEEEEEEEcCC
Confidence 567889999986654321100 011111 122334899999999999999999987643
No 223
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.96 E-value=2.8e-08 Score=62.00 Aligned_cols=46 Identities=24% Similarity=0.360 Sum_probs=33.2
Q ss_pred ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCccee--eEEEE
Q psy7941 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM--AFLEV 133 (238)
Q Consensus 88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~--~~l~v 133 (238)
+|.........+.+|.|.|++.+|+|.|.|.+.+....+.. +.|+|
T Consensus 48 ~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 48 GRVSFKNYSLLDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred CcEEEcCCCCCccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence 46655444456779999999999999999999775444444 44444
No 224
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.96 E-value=1.5e-08 Score=64.40 Aligned_cols=89 Identities=22% Similarity=0.346 Sum_probs=53.8
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee-eeeeeeeEe---------
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA-VLAIHEHVI--------- 84 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~-~~~~~~~~~--------- 84 (238)
+....+.+|+++.|.|.... . +...+.|+|..... ......+..
T Consensus 5 ~~p~~~~~G~~V~L~v~~~p--~------------------------~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp 58 (105)
T cd05774 5 LVPPQVAEGENVLLLVHNLP--E------------------------NLLAYAWYKGKTVSPNFLIASYIISTNSSTPGP 58 (105)
T ss_pred ccCCcccCCCCEEEEecCCC--C------------------------CceEEEEEcCCCCCCCEEEEEEECCCcccccCc
Confidence 33445789999999997531 1 13369999963221 001111111
Q ss_pred ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEE
Q psy7941 85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV 133 (238)
Q Consensus 85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v 133 (238)
...+|..+..+. +|.|.+++.+|+|.|+|.+.+.......+.+.+
T Consensus 59 ~~~gR~~~~~ng----SL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l 103 (105)
T cd05774 59 AYSGRETIYPNG----SLLIQNVTQKDTGFYTLQTITTNFQVEQATVHL 103 (105)
T ss_pred ccCCcEEEeCCC----cEEEecCCcccCEEEEEEEEeCCccEEEEEEEE
Confidence 123454444433 999999999999999999977654444444433
No 225
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.96 E-value=9.4e-09 Score=62.45 Aligned_cols=78 Identities=21% Similarity=0.330 Sum_probs=55.4
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEE
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTH 94 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (238)
.+.+.+..|+++.|.|..... .+.+.|++++..+. .+.++....
T Consensus 3 ~~~~tv~~g~~v~L~C~~~s~---------------------------~A~v~W~~ng~~l~---------~~~r~~~~~ 46 (85)
T cd05872 3 VKNRTVAPGADVVLPCQLRSN---------------------------LASPVWLFNGTPLN---------AQFSYRVGT 46 (85)
T ss_pred ceEEEEecCCCEEEECCCCCC---------------------------CccEEEEECCcccC---------CCcceEEeC
Confidence 456789999999999998532 45699999887642 234444443
Q ss_pred cCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEE
Q psy7941 95 NDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV 133 (238)
Q Consensus 95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v 133 (238)
. .|.|.+++.+|+|.|.|.+...+.....+.+.+
T Consensus 47 ~-----GLlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~l 80 (85)
T cd05872 47 D-----GLLILVTSPEHSGTYRCYSEEEGFQQLVASYSL 80 (85)
T ss_pred C-----CCEEEECCHhhCEEEEEEEecCCCeEEEEEEEE
Confidence 3 688999999999999999965555444333333
No 226
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.96 E-value=1.8e-08 Score=65.80 Aligned_cols=87 Identities=17% Similarity=0.319 Sum_probs=53.2
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce-----eeeee-eeeEee-c
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK-----AVLAI-HEHVIT-N 86 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-----~~~~~-~~~~~~-~ 86 (238)
.|..+.+.+|++++|.|.+...... .....+.|++.... ..... ...... .
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~----------------------~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~ 61 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPI----------------------SDDISVTWSFQPEGSGDTESIFHYHKGPYYPLK 61 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCc----------------------CCceEEEEEEecCCCCCcEEEEEEcCCcccccc
Confidence 4677889999999999998643211 01235899874321 11111 111110 1
Q ss_pred C----ccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 87 N----ARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 87 ~----~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
. .|+.+... ..+.++|+|.+++.+|+|.|.|.+.+.
T Consensus 62 ~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~ 102 (116)
T cd05715 62 DGRFKDRVEWVGNPSRKDASIVIHNLQFTDNGTYTCDVKNP 102 (116)
T ss_pred CccccCcEEEecCCcCCeeEEEEeeCCcccCEEEEEEEEeC
Confidence 1 34444332 224579999999999999999999754
No 227
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.95 E-value=7.6e-09 Score=64.72 Aligned_cols=75 Identities=21% Similarity=0.304 Sum_probs=46.8
Q ss_pred cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee-------eeeEe--ecCccEEEE
Q psy7941 23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI-------HEHVI--TNNARLSVT 93 (238)
Q Consensus 23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~-------~~~~~--~~~~~~~~~ 93 (238)
|++++|.|.+.... ...+.|++......... ..... ...+|+.+.
T Consensus 1 G~~VtL~c~~~~~~--------------------------~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~ 54 (92)
T cd05741 1 GESVTLPVSNLPEN--------------------------LQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY 54 (92)
T ss_pred CCcEEEEcccCCCC--------------------------CEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc
Confidence 78999999875311 33599999754322111 00011 112344443
Q ss_pred EcCCCeEEEEEcccCcccCeEEEEEEecCCCcce
Q psy7941 94 HNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ 127 (238)
Q Consensus 94 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~ 127 (238)
.. .+|.|.+++.+|+|.|+|.+........
T Consensus 55 ~~----~sL~I~~l~~~DsG~Y~c~v~~~~~~~~ 84 (92)
T cd05741 55 PN----GSLLIQNLTKEDSGTYTLQIISTNGVTE 84 (92)
T ss_pred CC----ceEEEccCCchhcEEEEEEEEcCCCcEE
Confidence 32 5999999999999999999976543333
No 228
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.95 E-value=1.5e-08 Score=60.89 Aligned_cols=57 Identities=16% Similarity=0.360 Sum_probs=36.8
Q ss_pred CCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941 61 SSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 61 ~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
.|.+.+.|++++..+.... ....++.... .....+|.|.+++.+|+|.|+|.+.|..
T Consensus 11 ~p~~~~~W~~~g~~i~~~~-----~~~~~~~~~~-~~~~~~L~I~~~~~~DsG~Y~C~a~N~~ 67 (76)
T cd05895 11 YPSLRFKWFKNGKEIGAKN-----KPDNKIKIRK-KKKSSELQISKASLADNGEYKCMVSSKL 67 (76)
T ss_pred CCCCceEEEECCcccccCC-----CCCceEEEEe-CCcEEEEEECcCCcccCEEEEEEEEeCC
Confidence 4567899999765442110 0112222221 2234489999999999999999998754
No 229
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.95 E-value=1.2e-08 Score=61.90 Aligned_cols=77 Identities=22% Similarity=0.402 Sum_probs=51.3
Q ss_pred cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCc
Q psy7941 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNA 88 (238)
Q Consensus 9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ 88 (238)
|.+..++ ..+.+|+++.|.|.+.. .|.+++.|++++..+... ..
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~~~--------------------------~p~~~~~w~~~~~~~~~~--------~~ 45 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSVSG--------------------------NPPPQVQWYKNGSPINSS--------QN 45 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEEES--------------------------SSSSEEEEEETTEEEEEE--------SS
T ss_pred cEEEccc--eEEeCCCcEEEEEEEEc--------------------------ccceeeeeeeeeeeeeee--------ee
Confidence 4454444 55789999999999862 335679999976443210 00
Q ss_pred cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEE
Q psy7941 89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV 133 (238)
Q Consensus 89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v 133 (238)
.+.+.+++.+|.|.|+|.+.+.........+.|
T Consensus 46 ------------~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v 78 (80)
T PF13895_consen 46 ------------GLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNV 78 (80)
T ss_dssp ------------EEEESSEEGGGTEEEEEEEEETTEEEEEEEEEE
T ss_pred ------------eeeeeeeccccCEEEEEEEEeCCCCeEeeeEEe
Confidence 367788999999999999977544334444444
No 230
>smart00409 IG Immunoglobulin.
Probab=98.95 E-value=2.9e-08 Score=60.76 Aligned_cols=80 Identities=30% Similarity=0.546 Sum_probs=56.6
Q ss_pred eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCCCCCc
Q psy7941 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGVPPTV 225 (238)
Q Consensus 148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~g~~~ 225 (238)
..+..|+.+.|.|.+.+.+.+.+.|+++++..+... ........ ...|.|.++..+|.|.|+|.+.+..+..
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~- 77 (86)
T smart00409 4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAES-----GRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSA- 77 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCC-----CcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeE-
Confidence 456789999999999888888999999524333211 01111111 2479999999999999999999888744
Q ss_pred cceEEEEE
Q psy7941 226 SKRLMLHV 233 (238)
Q Consensus 226 ~~~~~l~V 233 (238)
...+.|.|
T Consensus 78 ~~~~~l~V 85 (86)
T smart00409 78 SSTTTLTV 85 (86)
T ss_pred EEEEEEEE
Confidence 44466665
No 231
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.95 E-value=2.9e-08 Score=60.76 Aligned_cols=80 Identities=30% Similarity=0.546 Sum_probs=56.6
Q ss_pred eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCCCCCc
Q psy7941 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGVPPTV 225 (238)
Q Consensus 148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~g~~~ 225 (238)
..+..|+.+.|.|.+.+.+.+.+.|+++++..+... ........ ...|.|.++..+|.|.|+|.+.+..+..
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~- 77 (86)
T smart00410 4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAES-----GRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSA- 77 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCC-----CcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeE-
Confidence 456789999999999888888999999524333211 01111111 2479999999999999999999888744
Q ss_pred cceEEEEE
Q psy7941 226 SKRLMLHV 233 (238)
Q Consensus 226 ~~~~~l~V 233 (238)
...+.|.|
T Consensus 78 ~~~~~l~V 85 (86)
T smart00410 78 SSTTTLTV 85 (86)
T ss_pred EEEEEEEE
Confidence 44466665
No 232
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.94 E-value=3.1e-08 Score=63.78 Aligned_cols=98 Identities=17% Similarity=0.280 Sum_probs=55.1
Q ss_pred ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--e--eeeeeeeeE-e--ecCccEEEEE
Q psy7941 22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--K--AVLAIHEHV-I--TNNARLSVTH 94 (238)
Q Consensus 22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~--~~~~~~~~~-~--~~~~~~~~~~ 94 (238)
.|++++|.|.+.......-+. - ..+...+.+.|+|... + ......... + ...+|+++..
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~------------~--~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~ 66 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGA------------P--TVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPN 66 (112)
T ss_pred CCCcEEEeeEEeCCcCccccc------------c--ccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecc
Confidence 489999999997532110000 0 0001135799998632 1 111111111 1 1234777654
Q ss_pred c--CCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEE
Q psy7941 95 N--DANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEV 133 (238)
Q Consensus 95 ~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 133 (238)
. ....++|+|.+++.+|+|.|+|.+..+ ........|.|
T Consensus 67 ~~~~~~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v 108 (112)
T cd05900 67 YPAIPSDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQV 108 (112)
T ss_pred cCCCCCCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEE
Confidence 2 346779999999999999999999754 22333334444
No 233
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.93 E-value=4.4e-08 Score=63.55 Aligned_cols=87 Identities=16% Similarity=0.197 Sum_probs=54.7
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeC-Cce-----eeeeeeeeEee--
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKA-DTK-----AVLAIHEHVIT-- 85 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~-~~~-----~~~~~~~~~~~-- 85 (238)
.+..+.+..|+++.|.|.+..... ..+..++.|.+. ... .........+.
T Consensus 4 ~~~ev~a~~G~~v~L~C~f~~~~~----------------------~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~ 61 (116)
T cd05879 4 TDREVYGTVGSDVTLSCSFWSSEW----------------------ISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDD 61 (116)
T ss_pred ccceEEEEcCCcEEEEEEEecCCC----------------------CCCcEEEEEEEcCCCCCccEEEEEeCCCceeccc
Confidence 456788999999999999964321 112456889442 211 11111111111
Q ss_pred ---cCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 86 ---NNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 86 ---~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
..+|+...... .++.+|.|.+++.+|.|.|+|.+.+.
T Consensus 62 ~~~f~~Rv~f~g~~~~~daSI~I~nv~~sD~G~Y~C~v~n~ 102 (116)
T cd05879 62 VGPFKERIEWVGNPSRKDGSIVIHNLDYTDNGTFTCDVKNP 102 (116)
T ss_pred ccCccCceEEeCCCCcCeeEEEEccCCcccCEEEEEEEEcC
Confidence 12355544332 36679999999999999999999874
No 234
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.93 E-value=1.2e-08 Score=63.73 Aligned_cols=84 Identities=17% Similarity=0.269 Sum_probs=54.3
Q ss_pred eeecCCCcEEEEEEE-c-----ccc-----CCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEE
Q psy7941 148 MMVPEGGSAKLVCKA-K-----GYP-----TPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCI 216 (238)
Q Consensus 148 ~~~~~g~~~~l~C~~-~-----~~p-----~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 216 (238)
..+.+|+.+.|.|.. . +++ ...+.|++++........ ...........+..|.|..+..+|+|.|+|.
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~-~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~ 88 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIE-IIFDGVRMSKEEDSIWFRPAELQDSGLYTCV 88 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCc-ccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence 557889999999986 1 122 337999995422221111 0011123345667899999999999999999
Q ss_pred eeeCCCCCccceEEEEE
Q psy7941 217 AANGVPPTVSKRLMLHV 233 (238)
Q Consensus 217 ~~n~~g~~~~~~~~l~V 233 (238)
+.|... ....++.|+|
T Consensus 89 ~rN~t~-C~~~~i~l~V 104 (104)
T cd05896 89 LRNSTY-CMKVSMSLTV 104 (104)
T ss_pred ECCCCc-ceEEEEEEEC
Confidence 999876 3344555443
No 235
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.92 E-value=1.7e-08 Score=60.71 Aligned_cols=79 Identities=24% Similarity=0.379 Sum_probs=51.3
Q ss_pred EEEEEEEcc-ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCe-EEEEEeeeCCCCCccceEEEEE
Q psy7941 156 AKLVCKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG-AYQCIAANGVPPTVSKRLMLHV 233 (238)
Q Consensus 156 ~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g~~~~~~~~l~V 233 (238)
+.|.|.+.| .|.+.|.|++ ++..+.................+.|.+ .+..+|.| .|+|.|.|+.-.....++.|.|
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k-~~~~l~~~~~~~~~~~~~~t~~S~L~~-~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V 79 (82)
T cd05883 2 IELNCTAMASKPAATIRWFK-GNKELTGKSTVEETWSRMFTVTSQLML-KVTKEDDGVPVICLVDHPAVKDLQTQRYLEV 79 (82)
T ss_pred EEEEEEecCCCCCCEEEEEE-CCEECcCcccceeccCCCcEEEEEEEE-ECchhhCCCEEEEEEcCcccCCceeeEEEEE
Confidence 689999977 8999999999 555554321100001011112234555 45666666 9999999987556678888988
Q ss_pred Eee
Q psy7941 234 HCT 236 (238)
Q Consensus 234 ~~~ 236 (238)
++.
T Consensus 80 ~y~ 82 (82)
T cd05883 80 QYK 82 (82)
T ss_pred EEC
Confidence 863
No 236
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.92 E-value=1.2e-08 Score=64.58 Aligned_cols=78 Identities=23% Similarity=0.339 Sum_probs=51.0
Q ss_pred EEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeeeee-eEeecCccEEEE
Q psy7941 19 TIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAIHE-HVITNNARLSVT 93 (238)
Q Consensus 19 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~~~-~~~~~~~~~~~~ 93 (238)
.+.+|+++.|.|.++... .....+.||+.... + +..... ......+|+...
T Consensus 2 ~v~~G~~v~l~C~~~~~~------------------------~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~ 57 (98)
T cd04984 2 SVSPGETVTITCTGSSGN------------------------ISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGS 57 (98)
T ss_pred ccCCCCCEEEEEEEcCCC------------------------cCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEE
Confidence 578999999999986431 01234899986532 1 111111 101124577765
Q ss_pred EcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941 94 HNDANTWTLNIRSVRREDRGYYMCQVNT 121 (238)
Q Consensus 94 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 121 (238)
... ..++|.|.+++.+|+|.|.|.+.+
T Consensus 58 ~~~-~~~~L~I~~~~~~Dsg~Y~C~~~~ 84 (98)
T cd04984 58 KSG-NTASLTISGAQTEDEADYYCQVWD 84 (98)
T ss_pred ccC-CEEEEEECCCChhhCEEEEEEEcc
Confidence 543 677999999999999999998853
No 237
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.91 E-value=9.7e-09 Score=64.14 Aligned_cols=84 Identities=18% Similarity=0.392 Sum_probs=51.3
Q ss_pred CceeEEEecCCEEEEeEEecC---CCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEE
Q psy7941 15 LENVTIAQGRDAIFTCVVNNL---GGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLS 91 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 91 (238)
.....+.+|+.+.|.|..-.. .+... .......+.|+|++........ ......|+.
T Consensus 7 ~~~~~~~~GE~v~l~C~~~~~~~~~~~~~------------------~~~~~~~v~WyK~~~~~~~~~~--~~~~~~Ri~ 66 (104)
T cd05896 7 LKKYMVLAGEPVRIKCALFYGYIRTNYSM------------------AQSAGLSLMWYKSSGDGEEPIE--IIFDGVRMS 66 (104)
T ss_pred eeeEEEcCCCeEEEECCCccccccccccc------------------cccCCceEEEEECCCCCCCCCc--ccccceeEE
Confidence 355789999999999996210 00000 0011235999998643322111 000112444
Q ss_pred EEEcCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941 92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 92 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
.... .|.|.++..+|+|.|+|++.|..
T Consensus 67 ~~~~-----~Lwf~Pa~~eDSG~Y~C~~rN~t 93 (104)
T cd05896 67 KEED-----SIWFRPAELQDSGLYTCVLRNST 93 (104)
T ss_pred EeCC-----EEEEEeCChhhCeEEEEEECCCC
Confidence 4443 99999999999999999997754
No 238
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.91 E-value=1.4e-08 Score=62.03 Aligned_cols=77 Identities=21% Similarity=0.337 Sum_probs=48.2
Q ss_pred EEEEEEEcc-ccCCeEEEEeCCCeeeEeecCCCC--CcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC-CCccceEEE
Q psy7941 156 AKLVCKAKG-YPTPKITWRREDNKEIIVRSNPPS--SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP-PTVSKRLML 231 (238)
Q Consensus 156 ~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g-~~~~~~~~l 231 (238)
+.|.|.+.| +|.+.++|++ ++..+........ .........+.|.+.....+|.|.|+|.|.|... ....++++|
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l 80 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFR-DGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL 80 (82)
T ss_pred EEEEEEEeCccCCCEEEEEE-CCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence 689999987 7888999999 5554432110000 0000111223577777777788899999999874 344666666
Q ss_pred EE
Q psy7941 232 HV 233 (238)
Q Consensus 232 ~V 233 (238)
.|
T Consensus 81 ~v 82 (82)
T cd05759 81 DV 82 (82)
T ss_pred cC
Confidence 54
No 239
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.91 E-value=4.9e-08 Score=62.97 Aligned_cols=97 Identities=20% Similarity=0.339 Sum_probs=56.0
Q ss_pred ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--eee-e-eeeeeE-e--ecCccEEEEE
Q psy7941 22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KAV-L-AIHEHV-I--TNNARLSVTH 94 (238)
Q Consensus 22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~~-~-~~~~~~-~--~~~~~~~~~~ 94 (238)
.|++++|+|.+......... +.+.....+.|+|... ... . ...... . ...+|+.+..
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~----------------~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~ 64 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPP----------------SNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPN 64 (110)
T ss_pred CCCCEEEeeEeeCCcccccc----------------ccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEecc
Confidence 38999999999753211000 0001135699999632 111 1 111111 1 1234666543
Q ss_pred --cCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEE
Q psy7941 95 --NDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVV 134 (238)
Q Consensus 95 --~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~ 134 (238)
...+..+|+|.+++.+|+|.|.|.+... ........|.|.
T Consensus 65 ~~~~~~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 65 YPENRGDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred CCCCCCcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 2346779999999999999999999654 344555556654
No 240
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.91 E-value=3e-09 Score=61.71 Aligned_cols=59 Identities=27% Similarity=0.531 Sum_probs=41.3
Q ss_pred CCcEEEEEEE-ccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeec----eEEEEEeecCCCeEEEEEe
Q psy7941 153 GGSAKLVCKA-KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE----VLSLTKVTRSEMGAYQCIA 217 (238)
Q Consensus 153 g~~~~l~C~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~i~~~~~~d~G~y~C~~ 217 (238)
|+.+.|.|.+ .+.+...+.|++++......... ....... .|.|.++..+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~------~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTT------NRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEE------EEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCccee------EeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 6789999999 66778899999965433322110 0000111 3999999999999999986
No 241
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.91 E-value=5.6e-08 Score=60.69 Aligned_cols=47 Identities=26% Similarity=0.428 Sum_probs=35.8
Q ss_pred ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEE
Q psy7941 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVV 134 (238)
Q Consensus 88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~ 134 (238)
+|+........+.+|.|.|++.+|+|.|+|.+.+.......+.+.|.
T Consensus 48 ~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~~ 94 (96)
T cd05889 48 GRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEVV 94 (96)
T ss_pred CeEEEecCCCCccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEEE
Confidence 45555443335679999999999999999999887666677666664
No 242
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.90 E-value=2.9e-08 Score=61.05 Aligned_cols=84 Identities=21% Similarity=0.332 Sum_probs=49.2
Q ss_pred cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEE
Q psy7941 23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTL 102 (238)
Q Consensus 23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 102 (238)
|+++.|.|.+.... .+...+.|..++......... ...+...........+|
T Consensus 1 Ge~~~L~C~~~~~~------------------------~~~~~~~W~~p~~~~~~~~~~----~~~~~~~~~~~~~~s~L 52 (86)
T cd05862 1 GEKLVLNCTARTEL------------------------NVGIDFQWDYPGKKEQRAKSV----SENRRSLQEHTELSSTL 52 (86)
T ss_pred CCcEEEEEEEEeCC------------------------CCcEEEEEEcCCcccccceec----ccccccccccceeeeEE
Confidence 78999999996421 123458999876543211100 00011111111123499
Q ss_pred EEcccCcccCeEEEEEEecCCC-cceeeEEEEE
Q psy7941 103 NIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVV 134 (238)
Q Consensus 103 ~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~ 134 (238)
.|.+++.+|+|.|+|.+.+... ....+.+.|+
T Consensus 53 ~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V~ 85 (86)
T cd05862 53 TIENVTLSDLGRYTCTASSGQMIAKNSTIVIVH 85 (86)
T ss_pred EEecCCcccCEEEEEEEeecceEecccEEEEEe
Confidence 9999999999999999987532 3444455553
No 243
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.90 E-value=1.8e-08 Score=66.12 Aligned_cols=89 Identities=17% Similarity=0.290 Sum_probs=57.1
Q ss_pred ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeeeeeE----e
Q psy7941 13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIHEHV----I 84 (238)
Q Consensus 13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~~~----~ 84 (238)
..|+.+.+.+|++++|.|.+....... ......+.||+.... ......... .
T Consensus 4 q~P~~v~~~~G~~VtL~C~f~~~~~~~--------------------~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~ 63 (119)
T cd05712 4 WMPKSVSVQEGLCVLIPCSFSYPADWP--------------------VSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHE 63 (119)
T ss_pred cCCCEEEEeccccEEEEEEeeCccccc--------------------CCCceEEEEEeCCCCCCCCCcEEEcCCCccccc
Confidence 457788999999999999885321100 001235899997532 111111100 1
Q ss_pred ecCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941 85 TNNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNT 121 (238)
Q Consensus 85 ~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 121 (238)
...+|+.+.. ...+.++|.|.+++.+|+|.|.|.+..
T Consensus 64 ~f~gR~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~ 101 (119)
T cd05712 64 STRGRFRLLGDLGKKNCSLLISDAQPEDSGKYFFRVEL 101 (119)
T ss_pred cccccEEEecCCCCCEEEEEEccCChhhCeEEEEEEEc
Confidence 1235777753 355678999999999999999999854
No 244
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.87 E-value=3e-08 Score=59.45 Aligned_cols=58 Identities=17% Similarity=0.332 Sum_probs=40.2
Q ss_pred cCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 59 TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 59 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
.++|++.++||+++.++.... .....+..+.... +|.+.-....|++.|+|++.|...
T Consensus 10 ~skP~a~i~W~k~~~~l~~~~--~~~~~~~~~t~~s------~L~~~~~~~Ddg~~~~C~A~n~a~ 67 (80)
T cd05885 10 RSKPAATLRWYRDRKELKGVI--SQQENGKTVSVSN------TIRFPVDRKDDGAILSCEASHPAL 67 (80)
T ss_pred CccCCCeEEEEECCEECCCCc--ccccCCceEEEEE------EEEEEeeeccCCcEEEEEEEChhh
Confidence 456799999999887764321 1112233444433 799988889999999999988543
No 245
>KOG3515|consensus
Probab=98.87 E-value=7.1e-08 Score=79.95 Aligned_cols=172 Identities=21% Similarity=0.357 Sum_probs=105.7
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN 87 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 87 (238)
.|....+.-...+..|+.+.|.|.+.. +.|..++.|++.+..+.
T Consensus 7 ~pv~~~~~l~~~~~~g~~v~l~C~v~~-------------------------~pp~~~~eW~h~~~~~~----------- 50 (741)
T KOG3515|consen 7 VPVCESSSLTVGLRLGEDVPLPCRVNS-------------------------NPPEIDVEWYHSTSGEH----------- 50 (741)
T ss_pred CccccCCCCChhhccCCcceeeeecCC-------------------------CCCCcceEEEecCcccc-----------
Confidence 444444433448999999999999963 44577899999765432
Q ss_pred ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC--CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEE--c
Q psy7941 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN--PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKA--K 163 (238)
Q Consensus 88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~ 163 (238)
.|...... -+|..........+.|.|++.+. ........+.+..++.-... .......++..+.+.|.+ .
T Consensus 51 ~~~~~~~~----~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~pa~~~~--~~e~~~~~~~vvqi~c~~~~~ 124 (741)
T KOG3515|consen 51 GRYATIAD----PTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDYPPACLPE--LGEIFQVDKGVVQIICSAKVA 124 (741)
T ss_pred cccccccC----CceeeecchhhhhhhhhhhhcccccCceecceeeccccCcccccc--ccchhhhcCCeEEEEEeecCC
Confidence 11111111 17777777788889999999664 22233344666665553321 222345667889999965 3
Q ss_pred cccCCeEEEEeCCCeeeEeecCCCC----CcceEEEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941 164 GYPTPKITWRREDNKEIIVRSNPPS----SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221 (238)
Q Consensus 164 ~~p~~~~~W~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~ 221 (238)
+.|.+.+.|..+............. ...........+.+...+..+.|.|+|.|.|..
T Consensus 125 ~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~ 186 (741)
T KOG3515|consen 125 GRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRN 186 (741)
T ss_pred CCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEccccccc
Confidence 4778899999843222222110000 011111334567888888999999999999963
No 246
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.87 E-value=1.4e-08 Score=63.51 Aligned_cols=81 Identities=20% Similarity=0.277 Sum_probs=55.2
Q ss_pred CCcEEEEEEEccccCCeEEEEeCCCeeeEee-------c----CCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVR-------S----NPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221 (238)
Q Consensus 153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~-------~----~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~ 221 (238)
|++++|.|.....+...+.|++......... . ......+.....+..|.|.+++.+|+|.|+|.+....
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 6789999988766666999998543211100 0 0112233344455789999999999999999999888
Q ss_pred CCCccceEEEEE
Q psy7941 222 PPTVSKRLMLHV 233 (238)
Q Consensus 222 g~~~~~~~~l~V 233 (238)
|....+.+.|.|
T Consensus 81 ~~~~~~~~~l~v 92 (92)
T cd05741 81 GVTENAKFFLRV 92 (92)
T ss_pred CcEEEEEEEEEC
Confidence 755566665543
No 247
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.85 E-value=1.5e-07 Score=57.53 Aligned_cols=72 Identities=28% Similarity=0.529 Sum_probs=51.4
Q ss_pred ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeC-CceeeeeeeeeEeecCccEEEEE
Q psy7941 16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKA-DTKAVLAIHEHVITNNARLSVTH 94 (238)
Q Consensus 16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~ 94 (238)
..+.+..|+++.|.|.+... +.+.+.|+++ +..+. ...++....
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~--------------------------~~~~~~W~~~~~~~v~---------~~~~~~~~~ 46 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGS--------------------------PPPEVTWYKQGGKLLA---------ESGRFSVSR 46 (86)
T ss_pred CcEEEeCCCeEEEEEEEccC--------------------------CCCeEEEEECCCEEcC---------CCCcEEEEE
Confidence 45678899999999999743 2557999997 33221 233444333
Q ss_pred cCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941 95 NDANTWTLNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
... ..+|.|.++..+|+|.|.|.+.+..
T Consensus 47 ~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~ 74 (86)
T smart00410 47 SGS-NSTLTISNVTPEDSGTYTCAATNSS 74 (86)
T ss_pred cCC-eeEEEEEeeccccCeEEEEEEEcCC
Confidence 322 4489999999999999999997543
No 248
>smart00409 IG Immunoglobulin.
Probab=98.85 E-value=1.5e-07 Score=57.53 Aligned_cols=72 Identities=28% Similarity=0.529 Sum_probs=51.4
Q ss_pred ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeC-CceeeeeeeeeEeecCccEEEEE
Q psy7941 16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKA-DTKAVLAIHEHVITNNARLSVTH 94 (238)
Q Consensus 16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~ 94 (238)
..+.+..|+++.|.|.+... +.+.+.|+++ +..+. ...++....
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~--------------------------~~~~~~W~~~~~~~v~---------~~~~~~~~~ 46 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGS--------------------------PPPEVTWYKQGGKLLA---------ESGRFSVSR 46 (86)
T ss_pred CcEEEeCCCeEEEEEEEccC--------------------------CCCeEEEEECCCEEcC---------CCCcEEEEE
Confidence 45678899999999999743 2557999997 33221 233444333
Q ss_pred cCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941 95 NDANTWTLNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
... ..+|.|.++..+|+|.|.|.+.+..
T Consensus 47 ~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~ 74 (86)
T smart00409 47 SGS-NSTLTISNVTPEDSGTYTCAATNSS 74 (86)
T ss_pred cCC-eeEEEEEeeccccCeEEEEEEEcCC
Confidence 322 4489999999999999999997543
No 249
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.85 E-value=3.4e-08 Score=63.13 Aligned_cols=75 Identities=20% Similarity=0.492 Sum_probs=49.3
Q ss_pred EEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----e--eeeeee--eE-----ee
Q psy7941 19 TIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----A--VLAIHE--HV-----IT 85 (238)
Q Consensus 19 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~--~~~~~~--~~-----~~ 85 (238)
.+.+|++++|.|.+.+... ..+.||+.... . +..... .. ..
T Consensus 2 ~v~~G~~vtL~C~~~~~~~--------------------------~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~ 55 (104)
T cd05720 2 DAELGQKVELKCEVLNSSP--------------------------TGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEEL 55 (104)
T ss_pred cccCCCeEEEEEEecCCCC--------------------------CcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccC
Confidence 3678999999999854322 24899997532 1 111111 10 01
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN 120 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 120 (238)
...|+..... ...++|.|.+++.+|+|.|.|.+.
T Consensus 56 ~~~rf~~~~~-~~~~~L~I~~~~~sDsgtY~Ca~~ 89 (104)
T cd05720 56 SSKRFSGSRS-SNSFVLTLKNFQKENEGYYFCSVA 89 (104)
T ss_pred CCceEEEEec-CCEEEEEECCCCHHHCEEEEEEEc
Confidence 1456766443 477899999999999999999874
No 250
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.83 E-value=1.2e-07 Score=65.07 Aligned_cols=96 Identities=20% Similarity=0.292 Sum_probs=62.6
Q ss_pred ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee-eeeEeec--CccEEE
Q psy7941 16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI-HEHVITN--NARLSV 92 (238)
Q Consensus 16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~--~~~~~~ 92 (238)
..+.|.+|+++.|.|..... ...+++.|+|......... ....+.. .+|+..
T Consensus 23 ~~v~V~ege~VtLsCs~t~s-------------------------~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~ 77 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSS-------------------------FNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEY 77 (189)
T ss_pred EEEEEcCCCCEEEEEecCCC-------------------------CccceEEEEEcCCCEEEEecCCcEEChhhcCeEEE
Confidence 35678999999999997421 1245699999754322111 1111211 346665
Q ss_pred EEcCCCeEEEEEcccCcccCeEEEEEEecCC---CcceeeEEEEEcC
Q psy7941 93 THNDANTWTLNIRSVRREDRGYYMCQVNTNP---MTKQMAFLEVVIP 136 (238)
Q Consensus 93 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~l~v~~~ 136 (238)
........+|.|.+++.+|+|.|.|.+..-+ ..+..+-|+|+..
T Consensus 78 mS~s~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 78 LSKSFNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred eccCCCcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEch
Confidence 4444556699999999999999999996542 3345556777653
No 251
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.82 E-value=1.4e-07 Score=59.87 Aligned_cols=46 Identities=24% Similarity=0.276 Sum_probs=30.9
Q ss_pred ccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecC--CCcceeeEEEE
Q psy7941 88 ARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTN--PMTKQMAFLEV 133 (238)
Q Consensus 88 ~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~~~~~~~~l~v 133 (238)
+|.++... .....+|.|.+++.+|+|.|.|.+.+. +.....+.|.|
T Consensus 51 ~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 51 GRVRFETPNPIADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred CcEEEeCCCCCCceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence 45555432 335679999999999999999999763 22333444444
No 252
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.80 E-value=4.2e-08 Score=56.26 Aligned_cols=61 Identities=26% Similarity=0.505 Sum_probs=42.0
Q ss_pred ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEE
Q psy7941 22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWT 101 (238)
Q Consensus 22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (238)
+|+++.|.|.+.. .+.+.+.|++++.... ...... .....
T Consensus 1 ~g~~~~l~C~~~~--------------------------~~~~~v~W~~~~~~~~-----------~~~~~~---~~~~~ 40 (63)
T smart00408 1 EGQSVTLTCPAEG--------------------------DPVPNITWLKDGKPLP-----------ESNRLS---ASGST 40 (63)
T ss_pred CCceEEEEeeCcc--------------------------CCCCeEEEEECCEECC-----------CCCEEe---cCCcE
Confidence 4788999999632 3356799999765432 011111 11228
Q ss_pred EEEcccCcccCeEEEEEEecC
Q psy7941 102 LNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 102 L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
|.|.+++.+|+|.|+|.+.+.
T Consensus 41 L~i~~~~~~d~G~Y~C~~~n~ 61 (63)
T smart00408 41 LTIKSVSLEDSGEYTCVAENS 61 (63)
T ss_pred EEEeeCCcccCEEEEEEEecC
Confidence 999999999999999999764
No 253
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.80 E-value=7.9e-08 Score=61.80 Aligned_cols=78 Identities=15% Similarity=0.390 Sum_probs=49.9
Q ss_pred eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eee----ee-ee-eEe---
Q psy7941 18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVL----AI-HE-HVI--- 84 (238)
Q Consensus 18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~----~~-~~-~~~--- 84 (238)
+.|.+|++++|.|.+..... ...+.||+.... ... .. .. ...
T Consensus 1 ~~v~~G~~vtL~C~~~~~~~-------------------------~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~ 55 (107)
T cd07700 1 ILVQTNNTVKLSCEAKGISE-------------------------NTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEE 55 (107)
T ss_pred CEEcCCCCEEEEEEEecCCC-------------------------CCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccc
Confidence 35789999999999864221 224899996432 110 00 00 111
Q ss_pred ecCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941 85 TNNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVN 120 (238)
Q Consensus 85 ~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~ 120 (238)
....|++... .....+.|+|.+++.+|+|.|.|...
T Consensus 56 ~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~ 92 (107)
T cd07700 56 VSQEKFSIRVTSDSSRYRLHINRVKPEDSGTYFCMTV 92 (107)
T ss_pred cccCcEEEEEECCCCEEEEEECCCCHHHCEEEEEeEc
Confidence 1135676543 23456789999999999999999874
No 254
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.78 E-value=1.8e-07 Score=58.26 Aligned_cols=74 Identities=24% Similarity=0.344 Sum_probs=49.9
Q ss_pred CceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecC-CCCCcceEE----EeeceEEEEEeecCCCeEEEEEeee
Q psy7941 146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN-PPSSQKVFS----VESEVLSLTKVTRSEMGAYQCIAAN 219 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~n 219 (238)
.++.+.+|+++.|.|.+.+.....+.|++.+...+..... .....++.. .....|.|..++.+|.|.|+|.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 4577899999999999988766778998754322211111 111112211 1233699999999999999999975
No 255
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.78 E-value=1.3e-07 Score=61.73 Aligned_cols=84 Identities=17% Similarity=0.312 Sum_probs=54.6
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeeee---eeE---
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAIH---EHV--- 83 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~~---~~~--- 83 (238)
.|..+.+.+|++++|.|....... ....+.||+.... + +.... ...
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~------------------------~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~ 58 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTF------------------------TSYGVNWVRQAPGKGLEWIGFINPGGGETYYA 58 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCc------------------------ccceEEEEEECCCCCcEEEEEEecCCCceEeC
Confidence 456778999999999999754220 0124899996431 1 11111 000
Q ss_pred eecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEec
Q psy7941 84 ITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNT 121 (238)
Q Consensus 84 ~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~ 121 (238)
....+||...... ...+.|.|.+++.+|+|.|.|.+..
T Consensus 59 ~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 59 DSVKGRFTITRDTSKSTVYLQLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred cccCCcEEEEEEccCCEEEEEECCCCHHHCEEEEEEEEc
Confidence 1113578776554 3557899999999999999998743
No 256
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.78 E-value=2.5e-07 Score=59.33 Aligned_cols=48 Identities=25% Similarity=0.321 Sum_probs=33.5
Q ss_pred CccEEEEEcC--CCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEE
Q psy7941 87 NARLSVTHND--ANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVV 134 (238)
Q Consensus 87 ~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~ 134 (238)
.+|+.+.... .++.+|.|.+++.+|+|.|.|.+..+. .......|.|.
T Consensus 57 ~gRvsl~~~~~~~~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 57 QGRVSLPGYPKNRYNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred ccEEEeecCCCCCceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEE
Confidence 4567665432 367899999999999999999997643 23334445443
No 257
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.76 E-value=6.5e-07 Score=57.66 Aligned_cols=97 Identities=25% Similarity=0.383 Sum_probs=56.6
Q ss_pred cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC----------ceeeeeeeeeEe---ecCcc
Q psy7941 23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD----------TKAVLAIHEHVI---TNNAR 89 (238)
Q Consensus 23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~----------~~~~~~~~~~~~---~~~~~ 89 (238)
|++++|+|.+.-....+-+ -......+.|.|++.. ............ ...+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~---------------~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gR 66 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPS---------------VITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGR 66 (117)
T ss_pred CCCEEEeeEEEecCCCCCc---------------ccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCc
Confidence 6889999999743211100 0012335689998851 111112221111 22456
Q ss_pred EEEEEc--CCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEE
Q psy7941 90 LSVTHN--DANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVV 134 (238)
Q Consensus 90 ~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~ 134 (238)
..+... ..++.+|.|.+++.+|+|.|.|.+... ........|.|.
T Consensus 67 v~l~~~~~~~g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 67 VSVPSHPEDQGDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred EEeeccCCcCCceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 666533 336779999999999999999999654 333445556554
No 258
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.74 E-value=3.4e-07 Score=57.63 Aligned_cols=47 Identities=23% Similarity=0.424 Sum_probs=33.3
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEE
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEV 133 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v 133 (238)
.+|.........+.+|.|.+++.+|.|.|.|.+.+... ....+.|.|
T Consensus 50 ~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 50 RERVTFKNPSFEDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred cCcEEEcCCCCCcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 35666554444677999999999999999999987433 333444444
No 259
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.73 E-value=2.1e-07 Score=59.24 Aligned_cols=84 Identities=17% Similarity=0.145 Sum_probs=54.7
Q ss_pred eecCCCcEEEEEEEccccCCeEEEEeCCCe----ee-EeecC-------CCCCcceEEEeeceEEEEEeecCCCeEEEEE
Q psy7941 149 MVPEGGSAKLVCKAKGYPTPKITWRREDNK----EI-IVRSN-------PPSSQKVFSVESEVLSLTKVTRSEMGAYQCI 216 (238)
Q Consensus 149 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~----~~-~~~~~-------~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 216 (238)
.+.+|+++.|.|.....+...+.|++.... .+ ..... +....+.....+++|.|.++..+|+|.|+|.
T Consensus 9 ~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~~ 88 (105)
T cd05774 9 QVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTLQ 88 (105)
T ss_pred cccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEEE
Confidence 467899999999654333448999994211 11 11111 1122344455567999999999999999999
Q ss_pred eeeCCCCCccceEEEE
Q psy7941 217 AANGVPPTVSKRLMLH 232 (238)
Q Consensus 217 ~~n~~g~~~~~~~~l~ 232 (238)
+.+.........+.|.
T Consensus 89 v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 89 TITTNFQVEQATVHLQ 104 (105)
T ss_pred EEeCCccEEEEEEEEE
Confidence 9998753434555544
No 260
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.73 E-value=1.5e-07 Score=58.54 Aligned_cols=74 Identities=16% Similarity=0.286 Sum_probs=49.5
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN 87 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 87 (238)
+|.+...+. ..|..|++++|+|.... +...+.|+|++......
T Consensus 2 kP~L~a~p~-~vV~~G~~VtL~C~~~~---------------------------~~~~f~l~k~g~~~~~~--------- 44 (91)
T cd05751 2 KPSLWAEPS-SVVPLGKPVTLRCQGPY---------------------------GAVEYRLYREGSTFAVK--------- 44 (91)
T ss_pred CCEEEecCC-CccCCCCcEEEEEecCC---------------------------CCCEEEEEECCCCcccc---------
Confidence 455555554 46789999999998742 23458899876542210
Q ss_pred ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
..........+.|.+++.+|+|.|+|+..+.
T Consensus 45 ----~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 45 ----KPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred ----ccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 0001122338999999999999999999764
No 261
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.71 E-value=1.2e-07 Score=56.65 Aligned_cols=75 Identities=23% Similarity=0.423 Sum_probs=46.4
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN 87 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 87 (238)
+|.+...+.......+. +.|+|.+.... +.+.++|+. ....... ...
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~-------------------------~~~~~~W~~-~~~~~~~------~~~ 47 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGP-------------------------PPPSISWYD-SNPSFNS------NSR 47 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEE-------------------------SSEEEEEET-EEEEEEE------EEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEcccc-------------------------CCeEEEEEe-cCCceee------eee
Confidence 46666666666655555 99999996432 155799991 1110000 001
Q ss_pred ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121 (238)
Q Consensus 88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 121 (238)
.... ...+|.|.++..+|.|.|+|.+.|
T Consensus 48 ~~~~------~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 48 GSSS------SNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEE------EEEEEEESSCCGGGTEEEEEEEEE
T ss_pred eccc------eeeEEEEccCCHHhCcEEEEEEEC
Confidence 1111 122899999999999999999864
No 262
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.70 E-value=1.8e-07 Score=56.76 Aligned_cols=33 Identities=33% Similarity=0.685 Sum_probs=27.4
Q ss_pred CccEEEEEcC-CCeEEEEEcccCcccCeEEEEEE
Q psy7941 87 NARLSVTHND-ANTWTLNIRSVRREDRGYYMCQV 119 (238)
Q Consensus 87 ~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~ 119 (238)
.+|+...... ...++|.|.+++.+|+|.|.|.+
T Consensus 48 ~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 48 KGRVTISKDTSKNDVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred CCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEcC
Confidence 5677776654 67889999999999999999963
No 263
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.69 E-value=7e-08 Score=60.82 Aligned_cols=82 Identities=22% Similarity=0.334 Sum_probs=55.5
Q ss_pred CCCcEEEEEEEcc-ccCCeEEEEeCCCeeeEeec----C------CCCCcceEE-EeeceEEEEEeecCCCeEEEEEeee
Q psy7941 152 EGGSAKLVCKAKG-YPTPKITWRREDNKEIIVRS----N------PPSSQKVFS-VESEVLSLTKVTRSEMGAYQCIAAN 219 (238)
Q Consensus 152 ~g~~~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~----~------~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~n 219 (238)
.|++++|.|.... .....+.|++.....+.... . .....+... ..+..|.|.+++.+|+|.|.|.+.+
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~ 82 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT 82 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence 5899999998754 45568999984322221111 0 000111222 2236899999999999999999999
Q ss_pred CCCCCccceEEEEE
Q psy7941 220 GVPPTVSKRLMLHV 233 (238)
Q Consensus 220 ~~g~~~~~~~~l~V 233 (238)
..|....+.+.|.|
T Consensus 83 ~~~~~~~~~f~L~v 96 (97)
T cd05775 83 KNGVTITKEFTLHI 96 (97)
T ss_pred CCCCeEEEEEEEEe
Confidence 88877777887776
No 264
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.69 E-value=4.7e-07 Score=55.18 Aligned_cols=57 Identities=14% Similarity=0.279 Sum_probs=33.7
Q ss_pred CCCceEEEEeCCceeeeeeeeeEe-ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941 61 SSAMKVAWIKADTKAVLAIHEHVI-TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 61 ~~~~~~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
.|.+.+.|++++..+......... ..+..+...+ .|.+......|.|.|+|.+.+..
T Consensus 12 ~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s------~L~i~~~~~~~~~~y~C~a~n~~ 69 (82)
T cd05759 12 KPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVS------TLPITPSDHDTGRTFTCRARNEA 69 (82)
T ss_pred cCCCEEEEEECCEEccCceeeeeEecCCCeEEEEE------EEEEeCceecCCCEEEEEEcCcc
Confidence 356689999987654322111111 1112222222 78888777788899999997753
No 265
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.68 E-value=8.4e-07 Score=55.35 Aligned_cols=78 Identities=10% Similarity=0.198 Sum_probs=51.9
Q ss_pred ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCce-EEEEeCCceeeeeeeeeEeecCccEEEEE
Q psy7941 16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMK-VAWIKADTKAVLAIHEHVITNNARLSVTH 94 (238)
Q Consensus 16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (238)
..+.|.+|+.+.|.|.+... |+|+ +.|.+++..+.....+. +..+. ..
T Consensus 11 ~~~~v~~gE~~~L~V~ieAY--------------------------P~p~~~~W~~~~~~l~~~~~~~-~~~~~----~~ 59 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAY--------------------------PKPEHQQWIYMNRTLTNTSDHY-VKSRN----ES 59 (101)
T ss_pred ceEEEECCCCEEEEEEEEeC--------------------------CCCeeeEEEcCCcccCccccce-eEEec----cC
Confidence 46779999999999999643 4554 99999765432222111 11110 01
Q ss_pred cCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 95 NDANTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
.......|.|.++..+|.|.|+|.+.|...
T Consensus 60 ~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~ 89 (101)
T cd05860 60 NNRYVSELHLTRLKGTEGGTYTFLVSNSDA 89 (101)
T ss_pred ceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence 111334899999999999999999987643
No 266
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.67 E-value=6.3e-08 Score=60.23 Aligned_cols=72 Identities=17% Similarity=0.343 Sum_probs=45.3
Q ss_pred EEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCC
Q psy7941 19 TIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDAN 98 (238)
Q Consensus 19 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (238)
.+..|.++.|.|.--. +.. ...+.+.++|||++..+.. .+.++.....
T Consensus 6 ~~~~~~~~~l~Cp~~~--~f~-------------------~~~~~~~v~WYKd~~~l~~--------~~~~~~~~~~--- 53 (95)
T cd05897 6 ILFTSTSGKLVCPDLS--DFT-------------------INRTDVELQWYKDSVLLDK--------DNEKFYSLKG--- 53 (95)
T ss_pred EeccccCcEEECCCHH--Hcc-------------------cCCCCCcEEEccCCEECcC--------CCcceEecCC---
Confidence 4567888999997211 110 1234668999998755321 1122222111
Q ss_pred eEEEEEcccCcccCeEEEEEEecC
Q psy7941 99 TWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 99 ~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
...|.|.++..+|+|.|+|.+.+.
T Consensus 54 ~~~L~I~~v~~~D~G~YtC~~~~~ 77 (95)
T cd05897 54 STYLHIIDVSLNDSGYYTCKLQFT 77 (95)
T ss_pred CCEEEEEEcChhhCEEEEEEEEEe
Confidence 117999999999999999999764
No 267
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.66 E-value=4.4e-07 Score=58.29 Aligned_cols=82 Identities=21% Similarity=0.460 Sum_probs=53.5
Q ss_pred CCCcEEEEEEEcccc------CCeEEEEeCCCe-----eeEeec-C-----CCCCcceEEE----eeceEEEEEeecCCC
Q psy7941 152 EGGSAKLVCKAKGYP------TPKITWRREDNK-----EIIVRS-N-----PPSSQKVFSV----ESEVLSLTKVTRSEM 210 (238)
Q Consensus 152 ~g~~~~l~C~~~~~p------~~~~~W~~~~~~-----~~~~~~-~-----~~~~~~~~~~----~~~~l~i~~~~~~d~ 210 (238)
.|++++|.|.....| ...+.|++.... .+.... . .....+.... ...+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 378999999986543 347999985321 111110 0 1111222221 134799999999999
Q ss_pred eEEEEEeeeCCCCCccceEEEEEE
Q psy7941 211 GAYQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 211 G~y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
|.|.|.+.+..+ .....+.|.|.
T Consensus 81 G~Y~C~v~~~~~-~~~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLE-DESVVVALRLR 103 (106)
T ss_pred EEEEEEEEeccc-ceEEEEEEEEE
Confidence 999999999887 44888888875
No 268
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.65 E-value=1.4e-07 Score=56.34 Aligned_cols=57 Identities=37% Similarity=0.690 Sum_probs=41.1
Q ss_pred EEEEEEEcccc-CCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeee
Q psy7941 156 AKLVCKAKGYP-TPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219 (238)
Q Consensus 156 ~~l~C~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n 219 (238)
+.|.|.+.+.+ .+.+.|+. ....... .........+.|.+..+..+|.|.|+|.|.|
T Consensus 18 ~~l~C~~~~~~~~~~~~W~~-~~~~~~~------~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 18 VTLTCSAEGGPPPPSISWYD-SNPSFNS------NSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEESSEESSEEEEEET-EEEEEEE------EEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred EEEEEEEccccCCeEEEEEe-cCCceee------eeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 99999999877 77999991 1111110 0122344556799999999999999999987
No 269
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.63 E-value=6.3e-07 Score=57.76 Aligned_cols=82 Identities=17% Similarity=0.354 Sum_probs=52.8
Q ss_pred CCCcEEEEEEEcccc------------CCeEEEEeCCC--e-eeE-eecC-----CCCCcceEE------EeeceEEEEE
Q psy7941 152 EGGSAKLVCKAKGYP------------TPKITWRREDN--K-EII-VRSN-----PPSSQKVFS------VESEVLSLTK 204 (238)
Q Consensus 152 ~g~~~~l~C~~~~~p------------~~~~~W~~~~~--~-~~~-~~~~-----~~~~~~~~~------~~~~~l~i~~ 204 (238)
.|++++|.|...... .+.|.|++... + .+. .... .....+... ..+..|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 378999999986422 35899998421 1 111 1110 011112211 1356899999
Q ss_pred eecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941 205 VTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 205 ~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
++.+|+|.|+|.+.+... ..+..+.|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~-~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIE-DNYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCC-CceeEEEEEEE
Confidence 999999999999997766 44777777775
No 270
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.62 E-value=3.4e-07 Score=58.82 Aligned_cols=83 Identities=22% Similarity=0.453 Sum_probs=54.3
Q ss_pred CCCcEEEEEEEcccc------CCeEEEEeCC--C--e-eeEe-ecC-----CCCCcceEE----EeeceEEEEEeecCCC
Q psy7941 152 EGGSAKLVCKAKGYP------TPKITWRRED--N--K-EIIV-RSN-----PPSSQKVFS----VESEVLSLTKVTRSEM 210 (238)
Q Consensus 152 ~g~~~~l~C~~~~~p------~~~~~W~~~~--~--~-~~~~-~~~-----~~~~~~~~~----~~~~~l~i~~~~~~d~ 210 (238)
.|+++.|.|.....+ ...+.|++.. . . .+.. ... ......... ....+|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 378999999986543 4589999852 1 1 1111 110 001111111 1345899999999999
Q ss_pred eEEEEEeeeCCCCCccceEEEEEEe
Q psy7941 211 GAYQCIAANGVPPTVSKRLMLHVHC 235 (238)
Q Consensus 211 G~y~C~~~n~~g~~~~~~~~l~V~~ 235 (238)
|.|.|.+.+..+ .....+.|.|..
T Consensus 81 G~Y~C~v~~~~~-~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIE-DEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCC-ceEEEEEEEEEE
Confidence 999999998766 448888888863
No 271
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.62 E-value=2.2e-07 Score=57.86 Aligned_cols=78 Identities=23% Similarity=0.362 Sum_probs=53.3
Q ss_pred eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeC-CC-CCc
Q psy7941 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANG-VP-PTV 225 (238)
Q Consensus 148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~-~g-~~~ 225 (238)
..+..|++++|.|... .+...+.|++++. ...... .........+.|..+..+|+|.|+|.+.+. .+ +..
T Consensus 11 ~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~-~~~~~~------~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~~~~S~~ 82 (91)
T cd05751 11 SVVPLGKPVTLRCQGP-YGAVEYRLYREGS-TFAVKK------PPEPQNKAKFFIPSMKREHAGRYRCYYRSGVALWSEP 82 (91)
T ss_pred CccCCCCcEEEEEecC-CCCCEEEEEECCC-Cccccc------cCCCceeEEEEccCCChhHCEEEEEEEECCCCccCCC
Confidence 3578899999999875 5667899999543 221110 001223346899999999999999999986 33 344
Q ss_pred cceEEEEE
Q psy7941 226 SKRLMLHV 233 (238)
Q Consensus 226 ~~~~~l~V 233 (238)
+..+.|.|
T Consensus 83 Sd~lel~V 90 (91)
T cd05751 83 SDPLELVV 90 (91)
T ss_pred CCcEEEEe
Confidence 66677665
No 272
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.61 E-value=7.7e-07 Score=57.77 Aligned_cols=87 Identities=15% Similarity=0.247 Sum_probs=51.9
Q ss_pred CceeecCCCcEEEEEEEccc----cCCeEEEEeCC-Cee----e-EeecC-------CCCCcceE-----EEeeceEEEE
Q psy7941 146 GDMMVPEGGSAKLVCKAKGY----PTPKITWRRED-NKE----I-IVRSN-------PPSSQKVF-----SVESEVLSLT 203 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~~~~----p~~~~~W~~~~-~~~----~-~~~~~-------~~~~~~~~-----~~~~~~l~i~ 203 (238)
..+.+..|+.+.|.|..... +...+.|.... +.. + ..... .....+.. ...+.++.|.
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~ 85 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH 85 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence 44567889999999998553 23489994311 100 0 00000 00111221 1234589999
Q ss_pred EeecCCCeEEEEEeeeCCC-CCccceEEEE
Q psy7941 204 KVTRSEMGAYQCIAANGVP-PTVSKRLMLH 232 (238)
Q Consensus 204 ~~~~~d~G~y~C~~~n~~g-~~~~~~~~l~ 232 (238)
+++.+|.|.|+|.+.|.-+ ......+.|.
T Consensus 86 nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~ 115 (116)
T cd05879 86 NLDYTDNGTFTCDVKNPPDIVGKSSQVTLY 115 (116)
T ss_pred cCCcccCEEEEEEEEcCCCcCCceeEEEEE
Confidence 9999999999999999865 2323444443
No 273
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.58 E-value=1e-06 Score=55.93 Aligned_cols=80 Identities=19% Similarity=0.214 Sum_probs=49.9
Q ss_pred CCcEEEEEEEcccc---CCeEEEEeCCCeeeEeecC--C--------CCCcceEE------EeeceEEEEEeecCCCeEE
Q psy7941 153 GGSAKLVCKAKGYP---TPKITWRREDNKEIIVRSN--P--------PSSQKVFS------VESEVLSLTKVTRSEMGAY 213 (238)
Q Consensus 153 g~~~~l~C~~~~~p---~~~~~W~~~~~~~~~~~~~--~--------~~~~~~~~------~~~~~l~i~~~~~~d~G~y 213 (238)
|+++.|.|...... ...+.|++........... . ....+... .....|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 67899999985321 2268998854322211100 0 00112111 1124799999999999999
Q ss_pred EEEeeeCCCCCccceEEEEE
Q psy7941 214 QCIAANGVPPTVSKRLMLHV 233 (238)
Q Consensus 214 ~C~~~n~~g~~~~~~~~l~V 233 (238)
+|.+.+..+. ....+.|.|
T Consensus 81 ~C~v~~~~~~-~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFY-EEATVELKV 99 (100)
T ss_pred EEEEecCCcE-EEEEEEEEE
Confidence 9999987774 466777765
No 274
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.57 E-value=4.4e-07 Score=55.18 Aligned_cols=66 Identities=15% Similarity=0.301 Sum_probs=47.8
Q ss_pred ceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 147 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
...+..|+.+.|.|...+. .+.+.|++ ++..+... ... .....-|.|..+..+|+|.|.|.+. +.|
T Consensus 5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~-ng~~l~~~------~r~-~~~~~GLlI~~~~~~dsG~Y~C~s~-E~g 70 (85)
T cd05872 5 NRTVAPGADVVLPCQLRSN-LASPVWLF-NGTPLNAQ------FSY-RVGTDGLLILVTSPEHSGTYRCYSE-EEG 70 (85)
T ss_pred EEEEecCCCEEEECCCCCC-CccEEEEE-CCcccCCC------cce-EEeCCCCEEEECCHhhCEEEEEEEe-cCC
Confidence 4568889999999998764 67999999 44443211 122 2233348899999999999999987 445
No 275
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.56 E-value=4.5e-07 Score=58.53 Aligned_cols=77 Identities=16% Similarity=0.261 Sum_probs=51.5
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCe--e-eEeec-CC---CCCcceEEE-----eeceEEEEEeecCCCeE
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNK--E-IIVRS-NP---PSSQKVFSV-----ESEVLSLTKVTRSEMGA 212 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~--~-~~~~~-~~---~~~~~~~~~-----~~~~l~i~~~~~~d~G~ 212 (238)
+..+.+.+|+++.|.|.+.+.+...+.|++.... + ..... .. ....+.... ....|.|.+++.+|+|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~ 84 (109)
T cd04983 5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAV 84 (109)
T ss_pred CCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEE
Confidence 4456789999999999998777779999984321 1 11111 00 011122111 24489999999999999
Q ss_pred EEEEeeeCC
Q psy7941 213 YQCIAANGV 221 (238)
Q Consensus 213 y~C~~~n~~ 221 (238)
|.|.+.+..
T Consensus 85 Y~C~~~~~~ 93 (109)
T cd04983 85 YFCALSESG 93 (109)
T ss_pred EEEEEecCC
Confidence 999998754
No 276
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.55 E-value=2.5e-06 Score=51.33 Aligned_cols=68 Identities=19% Similarity=0.296 Sum_probs=40.3
Q ss_pred CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEE
Q psy7941 60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVV 134 (238)
Q Consensus 60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~ 134 (238)
++|.+.|+|++++.++.... ........++...+ +|.|......|...|+|++.+... ......|+|+
T Consensus 11 SkP~A~I~W~k~~~~l~~~~-~~~~~~~~~~t~~S------~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 11 SKPAATIRWFKGNKELTGKS-TVEETWSRMFTVTS------QLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred CCCCCEEEEEECCEECcCcc-cceeccCCCcEEEE------EEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 46788999999876653321 11112233344443 788866666667799999977532 2223345554
No 277
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.55 E-value=6.9e-07 Score=54.40 Aligned_cols=66 Identities=18% Similarity=0.323 Sum_probs=38.3
Q ss_pred EEEEEEEcc-ccCCeEEEEeCCCeeeEeecC-CCC-CcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941 156 AKLVCKAKG-YPTPKITWRREDNKEIIVRSN-PPS-SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP 223 (238)
Q Consensus 156 ~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~ 223 (238)
+.|.|.+.+ +|.+.+.|++ ++..+..... ... ..... ...+.|.+.....++.+.|+|.+.|....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~-~~~~l~~~~~~~~~~~~~~~-~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFK-GDKELKGVKLKEEDENGKTF-TVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEE-CCEEccCceeeEecCCCCEE-EEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 689999966 7989999999 4554432110 000 01111 11223444433444455999999998753
No 278
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.52 E-value=5.9e-07 Score=58.09 Aligned_cols=76 Identities=14% Similarity=0.314 Sum_probs=49.9
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCC--ee--eEeecCC------C-CCcceEE----EeeceEEEEEeecCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN--KE--IIVRSNP------P-SSQKVFS----VESEVLSLTKVTRSE 209 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~--~~--~~~~~~~------~-~~~~~~~----~~~~~l~i~~~~~~d 209 (238)
+..+.+.+|+++.|.|.+.+ +.+.+.|++... .+ +...... . ...+... .....|.|.+++.+|
T Consensus 5 p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~D 83 (110)
T cd05899 5 PRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPED 83 (110)
T ss_pred CCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhh
Confidence 44567899999999999987 677899998532 11 1100000 0 0111111 123479999999999
Q ss_pred CeEEEEEeeeCC
Q psy7941 210 MGAYQCIAANGV 221 (238)
Q Consensus 210 ~G~y~C~~~n~~ 221 (238)
+|.|.|.+.+..
T Consensus 84 sg~Y~Ca~~~~~ 95 (110)
T cd05899 84 SAVYLCASSLGG 95 (110)
T ss_pred CEEEEEEeeCCC
Confidence 999999998653
No 279
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.50 E-value=2.3e-06 Score=55.23 Aligned_cols=83 Identities=22% Similarity=0.397 Sum_probs=53.3
Q ss_pred CCCcEEEEEEEcccc----------CCeEEEEeCCC-ee-e-E-eecC-----CCCCcceEE------EeeceEEEEEee
Q psy7941 152 EGGSAKLVCKAKGYP----------TPKITWRREDN-KE-I-I-VRSN-----PPSSQKVFS------VESEVLSLTKVT 206 (238)
Q Consensus 152 ~g~~~~l~C~~~~~p----------~~~~~W~~~~~-~~-~-~-~~~~-----~~~~~~~~~------~~~~~l~i~~~~ 206 (238)
.|++++|.|.....+ ...+.|++... .. . . .... .....+... .....|.|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 378999999986533 25799998531 11 1 1 1110 011112111 123579999999
Q ss_pred cCCCeEEEEEeeeCCCCCccceEEEEEEe
Q psy7941 207 RSEMGAYQCIAANGVPPTVSKRLMLHVHC 235 (238)
Q Consensus 207 ~~d~G~y~C~~~n~~g~~~~~~~~l~V~~ 235 (238)
.+|+|.|.|.+..... ...+.+.|.|..
T Consensus 81 ~sD~G~Y~C~v~~~~~-~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIE-DEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCC-cceEEEEEEEEE
Confidence 9999999999998665 447888888864
No 280
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.48 E-value=3.6e-06 Score=51.22 Aligned_cols=58 Identities=21% Similarity=0.362 Sum_probs=33.7
Q ss_pred CCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 61 SSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 61 ~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
.|.+.+.|++++..+...........++.|...+ .|.+......+.+.|+|++.+...
T Consensus 12 ~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s------~l~~~~~~~d~g~~~~C~v~h~~l 69 (82)
T cd05761 12 KPAATIRWFKGDKELKGVKLKEEDENGKTFTVTS------SLRFQVDREDDGAPIICRVDHPAL 69 (82)
T ss_pred CcCCeEEEEECCEEccCceeeEecCCCCEEEEEE------EEEEEcchhhCCCEEEEEEeChhc
Confidence 4567899999876553211111112233444433 566655555566799999977543
No 281
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.47 E-value=4.3e-06 Score=54.41 Aligned_cols=88 Identities=17% Similarity=0.265 Sum_probs=52.8
Q ss_pred CCceeecCCCcEEEEEEEcccc----CCeEEEEeC---CCee--eEeecCC-------CCCcceEE-----EeeceEEEE
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYP----TPKITWRRE---DNKE--IIVRSNP-------PSSQKVFS-----VESEVLSLT 203 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p----~~~~~W~~~---~~~~--~~~~~~~-------~~~~~~~~-----~~~~~l~i~ 203 (238)
+..+.+.+|+++.|.|.....+ ...+.|++. ++.. +...... ....+... ..+..|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 4456788999999999975422 236999752 1221 1111100 00011111 123479999
Q ss_pred EeecCCCeEEEEEeeeCCCC-CccceEEEE
Q psy7941 204 KVTRSEMGAYQCIAANGVPP-TVSKRLMLH 232 (238)
Q Consensus 204 ~~~~~d~G~y~C~~~n~~g~-~~~~~~~l~ 232 (238)
+++.+|+|.|+|.+.|..+. .....+.|.
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 114 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPDVHGPIGEIRLR 114 (115)
T ss_pred eCChhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence 99999999999999987653 223455554
No 282
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.46 E-value=2.8e-06 Score=51.76 Aligned_cols=76 Identities=20% Similarity=0.337 Sum_probs=42.9
Q ss_pred EEEEEEEcc-ccCCeEEEEeCCCeeeEeecC---CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC--CCccceE
Q psy7941 156 AKLVCKAKG-YPTPKITWRREDNKEIIVRSN---PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP--PTVSKRL 229 (238)
Q Consensus 156 ~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g--~~~~~~~ 229 (238)
+.|.|.+.| +|.+.|+|++ ++..+..... ....... ....+.|.+.....++...|+|.+.|... ...+.+.
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k-~g~~l~~~~~~~~~~~~~~t-~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~~~~~~~~ 79 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRK-GDQELEGAPTSVLEDGNGKT-FTVSSSVEFQVTREDDGAEITCSVGHESLHDSDRSTSQ 79 (83)
T ss_pred EEEEEEecCccCCCEeEEEE-CCEECCCcceeEEECCCCCE-EEEEEEEEEEecchhCCCEEEEEEECcccCCCCceeEE
Confidence 689999977 7989999999 5544322110 0000011 11112344433344455599999999874 2444555
Q ss_pred EEEE
Q psy7941 230 MLHV 233 (238)
Q Consensus 230 ~l~V 233 (238)
.|+|
T Consensus 80 ~~~~ 83 (83)
T cd07705 80 RIEV 83 (83)
T ss_pred EeeC
Confidence 5543
No 283
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.46 E-value=3.9e-06 Score=54.80 Aligned_cols=89 Identities=16% Similarity=0.268 Sum_probs=52.7
Q ss_pred CCceeecCCCcEEEEEEEcccc----CCeEEEEeCCC-----eeeEee-cC-------CCCCcceEEE-----eeceEEE
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYP----TPKITWRREDN-----KEIIVR-SN-------PPSSQKVFSV-----ESEVLSL 202 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p----~~~~~W~~~~~-----~~~~~~-~~-------~~~~~~~~~~-----~~~~l~i 202 (238)
+..+.+..|+.+.|.|...... ...+.|++... ..+... .. .....+.... .+..|.|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 3446678999999999885422 24699986322 111110 00 0000111111 1247999
Q ss_pred EEeecCCCeEEEEEeeeCCCCCc-cceEEEEE
Q psy7941 203 TKVTRSEMGAYQCIAANGVPPTV-SKRLMLHV 233 (238)
Q Consensus 203 ~~~~~~d~G~y~C~~~n~~g~~~-~~~~~l~V 233 (238)
.+++.+|+|.|.|.+.|.-+... ...+.|.|
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~ 116 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPDIVGKPGEIRLRV 116 (116)
T ss_pred eeCCcccCEEEEEEEEeCCCCCCCccEEEEeC
Confidence 99999999999999998765321 34555543
No 284
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.44 E-value=1.6e-06 Score=55.46 Aligned_cols=74 Identities=22% Similarity=0.311 Sum_probs=48.7
Q ss_pred eecCCCcEEEEEEEccc-cCCeEEEEeCCCe----eeEeecCC------CCCcceEEE-----eeceEEEEEeecCCCeE
Q psy7941 149 MVPEGGSAKLVCKAKGY-PTPKITWRREDNK----EIIVRSNP------PSSQKVFSV-----ESEVLSLTKVTRSEMGA 212 (238)
Q Consensus 149 ~~~~g~~~~l~C~~~~~-p~~~~~W~~~~~~----~~~~~~~~------~~~~~~~~~-----~~~~l~i~~~~~~d~G~ 212 (238)
.+.+|+.+.|.|.+.+. +...+.|++.... .+...... ....+.... ....|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 46789999999999875 6678999984331 11111100 011111111 23479999999999999
Q ss_pred EEEEeeeCCC
Q psy7941 213 YQCIAANGVP 222 (238)
Q Consensus 213 y~C~~~n~~g 222 (238)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999997664
No 285
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=98.44 E-value=4.9e-06 Score=53.03 Aligned_cols=83 Identities=14% Similarity=0.260 Sum_probs=52.9
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee------eeEeecC
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH------EHVITNN 87 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~------~~~~~~~ 87 (238)
.+....+..|+++.|.|.++...- + ....+.|+|+......... .......
T Consensus 4 ~~~~~lv~p~~sv~LsC~~sg~~~---s--------------------~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~ 60 (115)
T cd05721 4 QQSPVLASSNGAASLVCEYTYNGF---S--------------------KEFRASLLKGADSAVEVCAVTGNMSNQLQTSL 60 (115)
T ss_pred ecCCeEEcCCCCEEEEEEecCCcc---c--------------------cEEEEEEEEeCCCCcEEEEEEeCCCccccccC
Confidence 445667889999999999964211 1 0135889986433211111 1111224
Q ss_pred ccEEEEEc-CCCeEEEEEcccCcccCeEEEEEE
Q psy7941 88 ARLSVTHN-DANTWTLNIRSVRREDRGYYMCQV 119 (238)
Q Consensus 88 ~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~ 119 (238)
.|+..... ..+..+|+|.+++.+|++.|.|..
T Consensus 61 ~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y~Ca~ 93 (115)
T cd05721 61 DGFNCDGTLGNEQVNFTLQNLRANQTDIYFCKI 93 (115)
T ss_pred CCeEEeEeCCCCEEEEEEcCCCHHHCeEEEEEe
Confidence 56655443 336779999999999999999975
No 286
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.40 E-value=3e-06 Score=53.53 Aligned_cols=79 Identities=23% Similarity=0.297 Sum_probs=49.3
Q ss_pred CcEEEEEEEcccc---CCeEEEEeCCCe---eeEeecC-------CCCCcceEEE----eeceEEEEEeecCCCeEEEEE
Q psy7941 154 GSAKLVCKAKGYP---TPKITWRREDNK---EIIVRSN-------PPSSQKVFSV----ESEVLSLTKVTRSEMGAYQCI 216 (238)
Q Consensus 154 ~~~~l~C~~~~~p---~~~~~W~~~~~~---~~~~~~~-------~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~ 216 (238)
+++.|.|.....+ ...+.|++.... .+..... .....+.... ....|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4689999986643 447999985432 1110000 0001111111 245899999999999999999
Q ss_pred eee-CCCCCccceEEEEE
Q psy7941 217 AAN-GVPPTVSKRLMLHV 233 (238)
Q Consensus 217 ~~n-~~g~~~~~~~~l~V 233 (238)
+.. +.| ...+.+.|.|
T Consensus 81 v~~~~~g-~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQG-NRQKVTTLTV 97 (98)
T ss_pred EEeCCCC-cEEEEEEEEe
Confidence 976 456 4477777776
No 287
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.40 E-value=1.9e-06 Score=55.92 Aligned_cols=89 Identities=21% Similarity=0.354 Sum_probs=55.3
Q ss_pred CCceeecCCCcEEEEEEEc-cccCCeEEEEeCCC---eeeEe-ecC--------CCCCcceEEEee-----ceEEEEEee
Q psy7941 145 SGDMMVPEGGSAKLVCKAK-GYPTPKITWRREDN---KEIIV-RSN--------PPSSQKVFSVES-----EVLSLTKVT 206 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~~~---~~~~~-~~~--------~~~~~~~~~~~~-----~~l~i~~~~ 206 (238)
+..+.+..|+++.|.|... ......+.|++... ..... ... ...........+ ..|.|.+++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~ 87 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ 87 (114)
T ss_dssp ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence 3446788999999999988 44556899998433 11111 000 111122222222 369999999
Q ss_pred cCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941 207 RSEMGAYQCIAANGVPPTVSKRLMLHV 233 (238)
Q Consensus 207 ~~d~G~y~C~~~n~~g~~~~~~~~l~V 233 (238)
.+|+|.|.|.+...........+.|.|
T Consensus 88 ~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 88 PSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp GGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred cCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 999999999999873323344555544
No 288
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.39 E-value=1.6e-06 Score=55.63 Aligned_cols=76 Identities=17% Similarity=0.341 Sum_probs=48.4
Q ss_pred CCceeecCCCcEEEEEEEcccc-CCeEEEEeCCC--e--eeEeecCC--C-CCcceEE---EeeceEEEEEeecCCCeEE
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYP-TPKITWRREDN--K--EIIVRSNP--P-SSQKVFS---VESEVLSLTKVTRSEMGAY 213 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~~~~--~--~~~~~~~~--~-~~~~~~~---~~~~~l~i~~~~~~d~G~y 213 (238)
+..+.+.+|+++.|.|.+.+.. ...+.|++... . .+...... . ....... .....|.|.+++.+|+|.|
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y 86 (106)
T cd04980 7 PATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVY 86 (106)
T ss_pred CCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEE
Confidence 4456789999999999987654 56899997431 1 11111100 0 0011111 1223699999999999999
Q ss_pred EEEeeeC
Q psy7941 214 QCIAANG 220 (238)
Q Consensus 214 ~C~~~n~ 220 (238)
.|.+.+.
T Consensus 87 ~Ca~~~~ 93 (106)
T cd04980 87 YCQQYGT 93 (106)
T ss_pred EEEEeCC
Confidence 9999754
No 289
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.38 E-value=1.1e-05 Score=55.76 Aligned_cols=90 Identities=17% Similarity=0.263 Sum_probs=59.2
Q ss_pred CceeecCCCcEEEEEEEc-cccCCeEEEEeCCCeeeEeecC----CC-CCcceEE----EeeceEEEEEeecCCCeEEEE
Q psy7941 146 GDMMVPEGGSAKLVCKAK-GYPTPKITWRREDNKEIIVRSN----PP-SSQKVFS----VESEVLSLTKVTRSEMGAYQC 215 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~~~~~~~~~~~----~~-~~~~~~~----~~~~~l~i~~~~~~d~G~y~C 215 (238)
..+.+.+|+++.|.|... +...+.+.|.+.++....-... .. ...+... .....|.|.+++.+|+|.|+|
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C 102 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC 102 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence 345688999999999984 5567789999854322211111 00 0111111 134589999999999999999
Q ss_pred EeeeC-CCCCccceEEEEEEe
Q psy7941 216 IAANG-VPPTVSKRLMLHVHC 235 (238)
Q Consensus 216 ~~~n~-~g~~~~~~~~l~V~~ 235 (238)
...-- .|...+.+..|.|..
T Consensus 103 ~F~tfp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 103 IFNTLLSKNNEKGVVCLNVTT 123 (189)
T ss_pred EEEecCCCCCceeEEEEEEEc
Confidence 99753 353557777787764
No 290
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.38 E-value=1.6e-06 Score=54.24 Aligned_cols=74 Identities=12% Similarity=0.170 Sum_probs=47.0
Q ss_pred cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCc
Q psy7941 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNA 88 (238)
Q Consensus 9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ 88 (238)
|.+... ....|..|++++|+|.... . ...+.|+|++........ ..
T Consensus 2 P~l~a~-p~~vV~~G~~VTL~C~~~~-~--------------------------~~~f~l~k~g~~~~~~~~------~~ 47 (94)
T cd05711 2 PFLSAH-PSPVVPSGENVTLQCHSDI-R--------------------------FDRFILYKEGRSKPVLHL------YE 47 (94)
T ss_pred CEEEec-CCCccCCCCeEEEEEecCC-C--------------------------CCEEEEEECCCCCCceec------cc
Confidence 444443 3556779999999998753 1 234899998754221100 00
Q ss_pred cEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941 89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVN 120 (238)
Q Consensus 89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 120 (238)
.........+.|..++.+|+|.|.|...
T Consensus 48 ----~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 48 ----KHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred ----ccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 0011123388999999999999999974
No 291
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.38 E-value=9e-06 Score=51.19 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=30.7
Q ss_pred ceEEEEEeecCCCeEEEEEeee-CCCCCccceEEEEE
Q psy7941 198 EVLSLTKVTRSEMGAYQCIAAN-GVPPTVSKRLMLHV 233 (238)
Q Consensus 198 ~~l~i~~~~~~d~G~y~C~~~n-~~g~~~~~~~~l~V 233 (238)
.+|.|.+++.+|.|.|+|.+.+ +.| ..+..+.|.|
T Consensus 63 aSi~i~nl~~~D~G~Y~C~v~t~P~g-~~~~~~~L~V 98 (99)
T cd05886 63 GTISLSRLELEDEGVYICEFATFPTG-NRESQLNLTV 98 (99)
T ss_pred ceEEEcCCccccCEEEEEEEEeCCCC-CeEEEEEEEE
Confidence 6899999999999999999999 567 4578888877
No 292
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.34 E-value=2.5e-06 Score=53.92 Aligned_cols=72 Identities=11% Similarity=0.294 Sum_probs=45.7
Q ss_pred eecCCCcEEEEEEEccc--cCCeEEEEeCCCe--e--eEeecC---CCCCcceEE---EeeceEEEEEeecCCCeEEEEE
Q psy7941 149 MVPEGGSAKLVCKAKGY--PTPKITWRREDNK--E--IIVRSN---PPSSQKVFS---VESEVLSLTKVTRSEMGAYQCI 216 (238)
Q Consensus 149 ~~~~g~~~~l~C~~~~~--p~~~~~W~~~~~~--~--~~~~~~---~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~ 216 (238)
.+.+|+++.|.|...+. ....+.|++.... + +..... .....+... .....|.|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 46789999999998764 4567999984321 1 111110 001111111 1233699999999999999999
Q ss_pred eeeC
Q psy7941 217 AANG 220 (238)
Q Consensus 217 ~~n~ 220 (238)
+.+.
T Consensus 82 ~~~~ 85 (98)
T cd04984 82 VWDS 85 (98)
T ss_pred EccC
Confidence 9754
No 293
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.34 E-value=7.2e-06 Score=51.66 Aligned_cols=80 Identities=23% Similarity=0.377 Sum_probs=49.5
Q ss_pred CCcEEEEEEEccccC-CeEEEEeCCCe---eeEee---cC----CCCCcceEE----EeeceEEEEEeecCCCeEEEEEe
Q psy7941 153 GGSAKLVCKAKGYPT-PKITWRREDNK---EIIVR---SN----PPSSQKVFS----VESEVLSLTKVTRSEMGAYQCIA 217 (238)
Q Consensus 153 g~~~~l~C~~~~~p~-~~~~W~~~~~~---~~~~~---~~----~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~ 217 (238)
|++++|.|....... -.+.|++..+. .+... .. .....+... .....|.|.+++.+|+|.|+|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 678999998654322 37999985332 11100 00 000111111 12457999999999999999998
Q ss_pred ee-CCCCCccceEEEEE
Q psy7941 218 AN-GVPPTVSKRLMLHV 233 (238)
Q Consensus 218 ~n-~~g~~~~~~~~l~V 233 (238)
.. +.| ..+..+.|.|
T Consensus 81 ~~~p~g-~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDG-SKSGTMCLTV 96 (97)
T ss_pred EeCCCC-CeeeEEEEEE
Confidence 75 456 5577777877
No 294
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.33 E-value=1.4e-05 Score=49.44 Aligned_cols=84 Identities=14% Similarity=0.297 Sum_probs=51.1
Q ss_pred cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE-eecC
Q psy7941 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV-ITNN 87 (238)
Q Consensus 9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~~~ 87 (238)
|.|......+... |+.+.+.|.+.+ +.|++.|.|+.++........... ....
T Consensus 1 p~I~~~~~~~~~~-~~~~~~~C~s~~-------------------------~~P~~~i~W~~~~~~~~~~~~~~~~~~~~ 54 (89)
T PF08205_consen 1 PEITPNPSLLEGE-GEEVTLTCSSSG-------------------------GYPPPQITWYLDGGPVVASNTTQSSSPDN 54 (89)
T ss_dssp EEEEEECSEEESS-TEEEEEEEEEEE-------------------------EBS-EEEEEEETTCEECEEEEEEEEETTT
T ss_pred CEeeCCCeeEccc-ceEEEEEEEeCC-------------------------eECCeEEEEEECCCceeeeeeeeeeccCC
Confidence 3444444444433 779999999863 456889999998877622222222 2334
Q ss_pred ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
+.+...+ +|.+..-...+...++|.+.+...
T Consensus 55 ~~~~~~S------~l~~~~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 55 GLFTVSS------TLTLTPTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp TTEEEEE------EEEEETTGGGTTEEEEEEEEETTC
T ss_pred CcceEEE------EEEEEcChHHCCeEEEEEEECCcc
Confidence 4444443 677765445566799999977543
No 295
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.32 E-value=4.5e-06 Score=54.52 Aligned_cols=75 Identities=19% Similarity=0.371 Sum_probs=49.0
Q ss_pred CCceeecCCCcEEEEEEEcc--ccCCeEEEEeCCC--ee--eEeecCC--------CCCcceEE--E---eeceEEEEEe
Q psy7941 145 SGDMMVPEGGSAKLVCKAKG--YPTPKITWRREDN--KE--IIVRSNP--------PSSQKVFS--V---ESEVLSLTKV 205 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~--~p~~~~~W~~~~~--~~--~~~~~~~--------~~~~~~~~--~---~~~~l~i~~~ 205 (238)
+..+.+.+|+++.|.|.+.+ .+.+.+.|++... .+ +...... ....+... . ....|.|.++
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~ 84 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL 84 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence 44567889999999999877 6777999998421 11 1110000 00111111 1 2347999999
Q ss_pred ecCCCeEEEEEeee
Q psy7941 206 TRSEMGAYQCIAAN 219 (238)
Q Consensus 206 ~~~d~G~y~C~~~n 219 (238)
+.+|+|.|.|.+..
T Consensus 85 ~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 85 EKEDSATYYCAYWE 98 (116)
T ss_pred CHHHCEEEEEEEec
Confidence 99999999999974
No 296
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.31 E-value=3.5e-06 Score=52.85 Aligned_cols=74 Identities=18% Similarity=0.375 Sum_probs=48.8
Q ss_pred EecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee--eeEeecCccEEEEEcCCC
Q psy7941 21 AQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH--EHVITNNARLSVTHNDAN 98 (238)
Q Consensus 21 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 98 (238)
..|+.+.|.|.+.+..+. .+.++|++++........ ......++.+...+
T Consensus 11 ~~~~~~~L~C~a~g~~P~------------------------~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s---- 62 (95)
T cd00098 11 LLGGSVTLTCLATGFYPP------------------------DITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSS---- 62 (95)
T ss_pred HcCCCeEEEEEEeeEECC------------------------CcEEEEEECCEECCCceeccccccCCCCCEEEEE----
Confidence 468999999999754211 346999998766543321 22223344555544
Q ss_pred eEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 99 TWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 99 ~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
.|.+......|.|.|+|++.+...
T Consensus 63 --~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 63 --QLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred --EEEECHHHhCCCCCEEEEEEeCCC
Confidence 677766666799999999977543
No 297
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.30 E-value=2.1e-05 Score=53.12 Aligned_cols=87 Identities=14% Similarity=0.294 Sum_probs=54.8
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCC-ceEEEEeCCceeee--------
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA-MKVAWIKADTKAVL-------- 77 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~~-------- 77 (238)
.+|.+...+.......|+.+.|.|.+.+. .|. +.+.|++++.....
T Consensus 37 ~~P~v~~~~~~~~~~~~~~~~L~C~a~g~-------------------------~P~~~~i~W~~~g~~~~~~~~~~~~~ 91 (139)
T cd05771 37 EPPRVRLSLEKLVSMIEEPQTLICHIAGY-------------------------YPLDVQVEWTREPPGDSPPPVSLSNV 91 (139)
T ss_pred cCCceEEeCCCceeecCCcEEEEEEECCC-------------------------CCCCeEEEEEECCCCCccceeccCCe
Confidence 35666555555555578999999999642 222 47999998654211
Q ss_pred eeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 78 AIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
.........++.|.+.+ .|.+......+.+.|+|++.+...
T Consensus 92 ~~~~~~~~~dgt~~~~s------~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 92 SFSSHRQHQDGTYSLSS------HLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred EecceEeCCCCCEEEEE------EEEecCCccCCCCEEEEEEEcCCC
Confidence 11112233455666655 788876665667799999976543
No 298
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.30 E-value=2.6e-06 Score=53.44 Aligned_cols=71 Identities=24% Similarity=0.448 Sum_probs=43.6
Q ss_pred cCCCcEEEEEEEccc-cC-CeEEEEeCCCeeeEeecC---CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 151 PEGGSAKLVCKAKGY-PT-PKITWRREDNKEIIVRSN---PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 151 ~~g~~~~l~C~~~~~-p~-~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
..|..+.|.|.+.|+ |. ..++|++ ++..+..... ............+.|.+......+.+.|+|.|.|...
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~-~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLK-NGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEE-CCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 357899999999996 64 5899999 5544422211 0001111111223455555555688999999999765
No 299
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.29 E-value=1.2e-05 Score=50.31 Aligned_cols=81 Identities=19% Similarity=0.269 Sum_probs=49.8
Q ss_pred eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC---C-C
Q psy7941 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV---P-P 223 (238)
Q Consensus 148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~---g-~ 223 (238)
..+..|++++|.|.... +...+.|++++........ ... ........+.|..++.+|+|.|.|...... . +
T Consensus 10 ~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~-~~~---~~~~~~a~f~I~~~~~~~~G~Y~C~~~~~~~~~~wS 84 (94)
T cd05711 10 PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHL-YEK---HHGGFQASFPLGPVTPAHAGTYRCYGSYNHSLYEWS 84 (94)
T ss_pred CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceec-ccc---cCCeEEEEEEecCCCcccCEEEEEEEECCCCCcccc
Confidence 45778999999998754 4568999995543211000 000 001122368999999999999999975322 1 2
Q ss_pred CccceEEEEE
Q psy7941 224 TVSKRLMLHV 233 (238)
Q Consensus 224 ~~~~~~~l~V 233 (238)
..+..+.|.|
T Consensus 85 ~~Sdpl~l~V 94 (94)
T cd05711 85 APSDPLKIVV 94 (94)
T ss_pred CCCCCeEEeC
Confidence 4455655543
No 300
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.26 E-value=1.4e-05 Score=48.23 Aligned_cols=62 Identities=21% Similarity=0.432 Sum_probs=46.4
Q ss_pred eecCCCcEEEEEEEcccc--CCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeC
Q psy7941 149 MVPEGGSAKLVCKAKGYP--TPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANG 220 (238)
Q Consensus 149 ~~~~g~~~~l~C~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~ 220 (238)
.+..|++++|.|.....+ .+.++|...++..... .......|.+..+...|+|.++|.+...
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~----------~~~~~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI----------LNQDKKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCcccee----------ccCCccEEEeceeCcccCCEEEEEEEEC
Confidence 467899999999985534 4599999866543321 1234457899999999999999999854
No 301
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.26 E-value=3e-05 Score=47.18 Aligned_cols=58 Identities=19% Similarity=0.353 Sum_probs=34.5
Q ss_pred CCCceEEEEeCCceeeeeeeeeEeecC-ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 61 SSAMKVAWIKADTKAVLAIHEHVITNN-ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 61 ~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
.|.+.|.|++++..+...........+ ..|.... .|.+......|...|+|++.+...
T Consensus 12 ~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s------~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 12 KPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSS------SVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred cCCCEeEEEECCEECCCcceeEEECCCCCEEEEEE------EEEEEecchhCCCEEEEEEECccc
Confidence 456789999987654322111111112 2343333 676655666677899999987543
No 302
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.24 E-value=1.6e-05 Score=50.99 Aligned_cols=81 Identities=23% Similarity=0.357 Sum_probs=51.2
Q ss_pred CCcEEEEEEEcccc-------CCeEEEEeCC----CeeeE-ee--cC-----CCCCcceEEE------eeceEEEEEeec
Q psy7941 153 GGSAKLVCKAKGYP-------TPKITWRRED----NKEII-VR--SN-----PPSSQKVFSV------ESEVLSLTKVTR 207 (238)
Q Consensus 153 g~~~~l~C~~~~~p-------~~~~~W~~~~----~~~~~-~~--~~-----~~~~~~~~~~------~~~~l~i~~~~~ 207 (238)
|+++.|.|...-.| .+.+.|.+.. ..... .. .. ..-..+.... .+..|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 67899999965322 3589998742 11111 10 00 1111122221 234899999999
Q ss_pred CCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941 208 SEMGAYQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 208 ~d~G~y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
+|+|.|.|.+..... .....+.|.|.
T Consensus 82 ~D~G~Y~C~v~~g~~-~~~~~v~L~V~ 107 (110)
T cd05902 82 SDSGTYRCEVVLGIN-DEQDTVPLEVT 107 (110)
T ss_pred HHCEEEEEEEEECCc-ccEEEEEEEEE
Confidence 999999999998654 44778888875
No 303
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.23 E-value=2e-05 Score=49.95 Aligned_cols=78 Identities=21% Similarity=0.371 Sum_probs=48.2
Q ss_pred cEEEEEEEcccc---CCeEEEEeCCCe----eeEe-ec--C----CCCCcceEE-----EeeceEEEEEeecCCCeEEEE
Q psy7941 155 SAKLVCKAKGYP---TPKITWRREDNK----EIIV-RS--N----PPSSQKVFS-----VESEVLSLTKVTRSEMGAYQC 215 (238)
Q Consensus 155 ~~~l~C~~~~~p---~~~~~W~~~~~~----~~~~-~~--~----~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C 215 (238)
++.|.|.....+ ...+.|++.... .+.. .. . .+...+... ..+..|.|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 589999885433 338999984321 1111 10 1 100011111 124589999999999999999
Q ss_pred Eeee-CCCCCccceEEEEE
Q psy7941 216 IAAN-GVPPTVSKRLMLHV 233 (238)
Q Consensus 216 ~~~n-~~g~~~~~~~~l~V 233 (238)
.+.+ +.| .....+.|.|
T Consensus 82 ~v~~~p~g-~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAG-NFEAELVLTV 99 (100)
T ss_pred EEEeCCCC-CeeeEEEEEe
Confidence 9998 556 4477777776
No 304
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.22 E-value=2.4e-05 Score=47.57 Aligned_cols=66 Identities=21% Similarity=0.302 Sum_probs=38.1
Q ss_pred EEEEEEEcc-ccCCeEEEEeCCCeeeEeecC--CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 156 AKLVCKAKG-YPTPKITWRREDNKEIIVRSN--PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 156 ~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
+.|.|.+.| +|...++|++ ++..+..... ............+.|.+..-...+...|+|.+.|..-
T Consensus 2 ~~LtC~a~gf~P~~~itW~k-ng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFK-NDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred EEEEEEeCCccCCCEEEEEE-CCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence 589999987 8888999999 5554422110 0000111112223455543333344499999999875
No 305
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.22 E-value=1.4e-05 Score=50.09 Aligned_cols=71 Identities=18% Similarity=0.383 Sum_probs=45.6
Q ss_pred ecCCCcEEEEEEEcc-ccCCe--EEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCe-EEEEEeeeCCCC
Q psy7941 150 VPEGGSAKLVCKAKG-YPTPK--ITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG-AYQCIAANGVPP 223 (238)
Q Consensus 150 ~~~g~~~~l~C~~~~-~p~~~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g~ 223 (238)
+.+|+.++|.|.+.| .|.+. +.|++ ++..+........... ......++.+ .+.++|.| .|+|.|.+..+.
T Consensus 13 ~~eG~~~tL~C~v~g~~P~a~L~i~W~r-G~~~l~~~~~~~~~~~-~~~~~stlt~-~~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 13 QPVGKNYTLQCDVPGVAPRQNLTVVLLR-GNETLSRQPFGDNTKS-PVNAPATITI-TVDREDHGANFSCETELDLRP 87 (100)
T ss_pred ccCCCcEEEEEEEcCcCCCCcEEEEEee-CCEEcccceeccccCC-CceeEEEEEE-ecchhhCCcEEEEEEEeccCc
Confidence 568999999999977 88886 79999 5555533221110001 1112224444 46677888 999999998763
No 306
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.20 E-value=6.8e-05 Score=48.41 Aligned_cols=37 Identities=24% Similarity=0.535 Sum_probs=31.8
Q ss_pred eceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941 197 SEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 197 ~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
+.+|.|.+++.+|.|.|.|.+.+... .....+.|.|.
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~-~~~~~v~L~V~ 114 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIE-DTQDTVSLDVS 114 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCc-ccEEEEEEEEE
Confidence 45899999999999999999998876 44788888875
No 307
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.17 E-value=3.9e-05 Score=47.92 Aligned_cols=79 Identities=18% Similarity=0.321 Sum_probs=48.5
Q ss_pred CcEEEEEEEccc-cCCeEEEEeCCC---eeeEeecC-------CCCCcceEE----EeeceEEEEEeecCCCeEEEEEee
Q psy7941 154 GSAKLVCKAKGY-PTPKITWRREDN---KEIIVRSN-------PPSSQKVFS----VESEVLSLTKVTRSEMGAYQCIAA 218 (238)
Q Consensus 154 ~~~~l~C~~~~~-p~~~~~W~~~~~---~~~~~~~~-------~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~ 218 (238)
+++.|.|..... ....++|.+..+ ..+..-.. ..-..+... ..+.+|.|.++..+|.|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 368999998642 334899987432 11111100 011111111 225589999999999999999986
Q ss_pred e-CCCCCccceEEEEE
Q psy7941 219 N-GVPPTVSKRLMLHV 233 (238)
Q Consensus 219 n-~~g~~~~~~~~l~V 233 (238)
+ +.| ..+.+..|.|
T Consensus 81 tfP~G-~~~~~~~l~~ 95 (96)
T cd05887 81 TFPLG-NTQSSTTVTV 95 (96)
T ss_pred eCCCC-CeeEEEEEEE
Confidence 5 557 5577777776
No 308
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.16 E-value=3.4e-05 Score=46.92 Aligned_cols=58 Identities=22% Similarity=0.364 Sum_probs=35.0
Q ss_pred CCCceEEEEeCCceeeeeeeeeE-eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 61 SSAMKVAWIKADTKAVLAIHEHV-ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 61 ~~~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
.|.+.++|+|++..+........ ...++.|...+ .|.+..-...+...|+|++.+...
T Consensus 12 ~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s------~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 12 KPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSS------TLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred cCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEE------EEEEEcccccCCCEEEEEEechhc
Confidence 45678999998776432221111 12334454444 677765555667799999977543
No 309
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.12 E-value=3.2e-05 Score=48.55 Aligned_cols=76 Identities=16% Similarity=0.291 Sum_probs=44.8
Q ss_pred ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCce--EEEEeCCceeeeeeeeeEeecCccE
Q psy7941 13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMK--VAWIKADTKAVLAIHEHVITNNARL 90 (238)
Q Consensus 13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~W~~~~~~~~~~~~~~~~~~~~~~ 90 (238)
..+....+.+|+.++|+|.+.+. .|.++ |.||+++..+....... ......
T Consensus 6 l~~~p~~~~eG~~~tL~C~v~g~-------------------------~P~a~L~i~W~rG~~~l~~~~~~~--~~~~~~ 58 (100)
T cd05755 6 LSPLPSWQPVGKNYTLQCDVPGV-------------------------APRQNLTVVLLRGNETLSRQPFGD--NTKSPV 58 (100)
T ss_pred EecCCCcccCCCcEEEEEEEcCc-------------------------CCCCcEEEEEeeCCEEcccceecc--ccCCCc
Confidence 34444457899999999999753 44555 69999876653211100 001111
Q ss_pred EEEEcCCCeEEEEEcccCcccCe-EEEEEEecC
Q psy7941 91 SVTHNDANTWTLNIRSVRREDRG-YYMCQVNTN 122 (238)
Q Consensus 91 ~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~ 122 (238)
. ...+|.+. +..+|.| .|+|++...
T Consensus 59 ~------~~stlt~~-~~r~D~g~~~sC~A~l~ 84 (100)
T cd05755 59 N------APATITIT-VDREDHGANFSCETELD 84 (100)
T ss_pred e------eEEEEEEe-cchhhCCcEEEEEEEec
Confidence 1 12266665 4455555 999999654
No 310
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.11 E-value=2.2e-05 Score=49.56 Aligned_cols=74 Identities=18% Similarity=0.255 Sum_probs=46.9
Q ss_pred eeecCCCcEEEEEEEcc-ccCCeEEEEeCCCee---eEeecC---CCCCcceEEE-----eeceEEEEEeecCCCeEEEE
Q psy7941 148 MMVPEGGSAKLVCKAKG-YPTPKITWRREDNKE---IIVRSN---PPSSQKVFSV-----ESEVLSLTKVTRSEMGAYQC 215 (238)
Q Consensus 148 ~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~~~~---~~~~~~---~~~~~~~~~~-----~~~~l~i~~~~~~d~G~y~C 215 (238)
+.+.+|++++|.|.... .+...+.|++..... +..... .....+.... ....|.|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 35678999999999765 455689999854211 111000 1111112111 12379999999999999999
Q ss_pred EeeeCC
Q psy7941 216 IAANGV 221 (238)
Q Consensus 216 ~~~n~~ 221 (238)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 998654
No 311
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.08 E-value=6e-05 Score=48.51 Aligned_cols=70 Identities=14% Similarity=0.331 Sum_probs=40.8
Q ss_pred ecCCCcEEEEEEEcc-ccC-CeEEEEeCCCeeeEeecCC---CCCcceEEEeeceEEEEEeecCCCe-EEEEEeeeCCC
Q psy7941 150 VPEGGSAKLVCKAKG-YPT-PKITWRREDNKEIIVRSNP---PSSQKVFSVESEVLSLTKVTRSEMG-AYQCIAANGVP 222 (238)
Q Consensus 150 ~~~g~~~~l~C~~~~-~p~-~~~~W~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g 222 (238)
...|+.++|.|.+.| +|. ..++|++ ++..+...... ...... ....+.|.+. ....|.| .|+|.+.|...
T Consensus 18 ~~~g~~~tL~C~a~gF~P~~i~v~W~k-ng~~~~~~~~~~~p~~d~~t-y~~~S~L~~~-~~~~d~~~~ytC~V~H~~l 93 (111)
T cd05772 18 ANPGQSVNFTCSAHGFSPRDITVKWLK-NGNELSAEQPNITPEGDSVS-YNVTSTVQVK-LTEDDVHSQVTCEVQHRTL 93 (111)
T ss_pred cCCCCCEEEEEEEeeEeCCCCEEEEEE-CCEECcccccceeeCCCCCc-EEEEEEEEEE-CccccccCceEEEEEeCCC
Confidence 446788999999988 675 4999999 55554321110 011101 1122234444 3344545 59999999763
No 312
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.07 E-value=3.2e-05 Score=49.63 Aligned_cols=72 Identities=22% Similarity=0.430 Sum_probs=44.3
Q ss_pred eecCCCcEEEEEEEccc-cCCeEEEEeCCCe--e------eEeecC------CCC-CcceE-E-E---eeceEEEEEeec
Q psy7941 149 MVPEGGSAKLVCKAKGY-PTPKITWRREDNK--E------IIVRSN------PPS-SQKVF-S-V---ESEVLSLTKVTR 207 (238)
Q Consensus 149 ~~~~g~~~~l~C~~~~~-p~~~~~W~~~~~~--~------~~~~~~------~~~-~~~~~-~-~---~~~~l~i~~~~~ 207 (238)
.+..|++++|.|...+. ....+.|++.... + +..... ... ..... . . ....|.|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 46789999999998663 3458999984332 0 100000 000 11111 1 1 123699999999
Q ss_pred CCCeEEEEEeeeC
Q psy7941 208 SEMGAYQCIAANG 220 (238)
Q Consensus 208 ~d~G~y~C~~~n~ 220 (238)
+|+|.|.|...+.
T Consensus 82 ~Dsg~YyCa~~~~ 94 (107)
T cd07700 82 EDSGTYFCMTVGS 94 (107)
T ss_pred HHCEEEEEeEcCC
Confidence 9999999998643
No 313
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.07 E-value=7.9e-05 Score=44.98 Aligned_cols=64 Identities=23% Similarity=0.366 Sum_probs=45.1
Q ss_pred EEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCC
Q psy7941 19 TIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDAN 98 (238)
Q Consensus 19 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (238)
.+..|++++|+|..... ..|.+.++|+..+.+.... . ..+
T Consensus 10 ~lL~G~sLtLtl~~~s~------------------------s~p~~~i~w~~P~n~~~~~-----~-----------~~~ 49 (88)
T cd07694 10 HVLSGTNLTLTLHGSSN------------------------SLPAFKVEWRGPGNKSKQI-----L-----------NQD 49 (88)
T ss_pred eeecCCcEEEEEecCCC------------------------CCCCccEEEeCCCCcccee-----c-----------cCC
Confidence 67899999999998431 1234479999976652210 0 111
Q ss_pred eEEEEEcccCcccCeEEEEEEecC
Q psy7941 99 TWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 99 ~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
.-+|.+..+...|+|.++|.+...
T Consensus 50 ~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 50 KKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred ccEEEeceeCcccCCEEEEEEEEC
Confidence 228999999999999999999543
No 314
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.06 E-value=3.6e-05 Score=48.19 Aligned_cols=82 Identities=27% Similarity=0.417 Sum_probs=48.9
Q ss_pred ccCceeEEEecCCEEEEeEEecC-CCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee-eeeEeecCccE
Q psy7941 13 YPLENVTIAQGRDAIFTCVVNNL-GGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI-HEHVITNNARL 90 (238)
Q Consensus 13 ~~~~~~~v~~g~~~~l~C~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~ 90 (238)
.+|....+..|+.++|.|.+.+. .+. ...++|+|+++...... .......++.|
T Consensus 4 ~pPs~~~l~~~~~~tLtC~v~gf~yP~------------------------~i~v~W~r~~~~~~~~~~~~~~~~~dgty 59 (96)
T cd07696 4 LPPSPKQLLLTKSVKLTCLVTNLTSPE------------------------GVNVTWTRGSGEPVKASIQPPESHNNATL 59 (96)
T ss_pred cCcCHHHhccCCCeEEEEEEeCCCCCC------------------------CcEEEEEECCeEeeeEEecccccCCCCCE
Confidence 34444456678999999999875 222 44689999875432211 11122334455
Q ss_pred EEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 91 SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 91 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
.+.. .|.+..-...+...|.|.+.+.+.
T Consensus 60 ~~~s------~l~v~~~~w~~g~~ysC~V~H~~l 87 (96)
T cd07696 60 SVTS------TLNVSTDDWISGDTFQCKVTHPDL 87 (96)
T ss_pred EEEE------EEEeCHHHccCCCcEEEEEECCCC
Confidence 5544 565554333345689999987543
No 315
>KOG1480|consensus
Probab=98.02 E-value=1.9e-06 Score=70.93 Aligned_cols=187 Identities=20% Similarity=0.310 Sum_probs=105.9
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
..|.|+..++...+..|..+.|+|.++.....++ ...-.|..+...... ...
T Consensus 23 ~l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~----------------------kc~~~wv~~~~~~~~------~~~ 74 (909)
T KOG1480|consen 23 DLPHFTTEPKSAYIIKNKPLRLQCKANPATQIRF----------------------KCNSEWVHQSRHEKL------EGT 74 (909)
T ss_pred CcceeeecCCccceecCCCccceecCCccccccc----------------------ccChhhhcCccceee------ecc
Confidence 4678888999999999999999999865333321 112345554322111 111
Q ss_pred Cc--cEEEEEcCCCeEEEEEcccCcccCe---EEEEEEe--cC-CC-cceeeEEEEEcCCcccccccCCceeecCCCcEE
Q psy7941 87 NA--RLSVTHNDANTWTLNIRSVRREDRG---YYMCQVN--TN-PM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAK 157 (238)
Q Consensus 87 ~~--~~~~~~~~~~~~~L~i~~~~~~d~G---~Y~C~~~--~~-~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~ 157 (238)
+. ..... .....|.+...++.| .|+|+-- .. +. .+..+.+++.+- ...+...+.-..+..+..+.
T Consensus 75 d~tsg~~~~-----~~si~Isr~~v~~~~~~~d~~cQc~a~~~~g~~~s~~a~vr~ay~-rk~f~~~p~~q~V~~~s~~~ 148 (909)
T KOG1480|consen 75 DETSGLGVR-----EVSIDISRQQVETSGGPEDYWCQCVAWSDDGTVKSRKATVRIAYL-RKHFEQSPVGQEVQEETTLQ 148 (909)
T ss_pred CcccceeEE-----eeeeeeehhhhhcccCccceeeeeeeecCCCcchhhhHHHHHHHH-HHhhccChhhheeccccccc
Confidence 11 01111 114555555544443 7888652 11 11 111111111110 11112223333466778888
Q ss_pred EEEEE-ccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941 158 LVCKA-KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 158 l~C~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
+.|.. .+.|...+.|++ ++..+.. + ..........+++..+...|.|+|+|.|.|..+...+-++.+.|.
T Consensus 149 l~cr~pe~~paae~~w~k-~e~~~~p-d-----~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vy 219 (909)
T KOG1480|consen 149 LPCRPPEGDPKAEVEWLK-NEVVIDP-D-----ANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVY 219 (909)
T ss_pred ccccCcccchhhhhhccc-cCCCCCc-c-----ccchhhhcCCccccchhhhhcccceeeeehhhccccccceEEEEE
Confidence 99876 678888999999 4433322 1 223344555799999999999999999999998665555555443
No 316
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.01 E-value=0.0001 Score=47.50 Aligned_cols=75 Identities=17% Similarity=0.370 Sum_probs=44.1
Q ss_pred EEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC-ccEEEEEcCC
Q psy7941 19 TIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN-ARLSVTHNDA 97 (238)
Q Consensus 19 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 97 (238)
....|+.++|.|.+.+.-+. ...++|++++..+...........+ ..|...+
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~------------------------~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S--- 69 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPR------------------------DITVKWLKNGNELSAEQPNITPEGDSVSYNVTS--- 69 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCC------------------------CCEEEEEECCEECcccccceeeCCCCCcEEEEE---
Confidence 44578889999999753221 3579999987765322111111122 2454443
Q ss_pred CeEEEEEcccCcccCe-EEEEEEecCCC
Q psy7941 98 NTWTLNIRSVRREDRG-YYMCQVNTNPM 124 (238)
Q Consensus 98 ~~~~L~i~~~~~~d~G-~Y~C~~~~~~~ 124 (238)
.|.+.. ...|.| .|+|.+.+.+.
T Consensus 70 ---~L~~~~-~~~d~~~~ytC~V~H~~l 93 (111)
T cd05772 70 ---TVQVKL-TEDDVHSQVTCEVQHRTL 93 (111)
T ss_pred ---EEEEEC-ccccccCceEEEEEeCCC
Confidence 565543 444544 69999987653
No 317
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.01 E-value=4.4e-05 Score=48.28 Aligned_cols=81 Identities=14% Similarity=0.313 Sum_probs=49.5
Q ss_pred ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee--eeeEeecCccE
Q psy7941 13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI--HEHVITNNARL 90 (238)
Q Consensus 13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~--~~~~~~~~~~~ 90 (238)
.++.......++.+.|.|.+.+..+. ...+.|++++....... .......++.|
T Consensus 7 ~~p~~~~~~~~~~~~L~C~~~gfyP~------------------------~i~v~W~~~g~~~~~~~~~~~~~~~~dgty 62 (100)
T cd07699 7 FPPSSEELEKSGKATLVCLINDFYPG------------------------FATVQWKVDGATVSSGVQTSTTEQQSDNTY 62 (100)
T ss_pred ECCCHHHHccCCCcEEEEEEEeEECC------------------------CCEEEEEECCEECcccEeccccEECCCCCE
Confidence 33444445567889999999864322 35699999877653211 11122235566
Q ss_pred EEEEcCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941 91 SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 91 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
.... .|.+..-...+...|+|.+.+.+
T Consensus 63 ~~~s------~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 63 SLSS------YLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred EEEE------EEEEcHHHhCCCCeEEEEEEecC
Confidence 6554 66665444445679999997754
No 318
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.01 E-value=0.00015 Score=45.26 Aligned_cols=69 Identities=17% Similarity=0.399 Sum_probs=40.9
Q ss_pred cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee--eeeEeecCccEEEEEcCCCeE
Q psy7941 23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI--HEHVITNNARLSVTHNDANTW 100 (238)
Q Consensus 23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 100 (238)
|+.+.|.|.+.+.-+. ...+.|++++....... .......++.|...+
T Consensus 14 ~~~~~L~C~a~gF~P~------------------------~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s------ 63 (93)
T cd07698 14 DGSLTLSCHATGFYPR------------------------DIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWV------ 63 (93)
T ss_pred CCcEEEEEEEEEEeCC------------------------CcEEEEEECCEECcccccccceEECCCCeEEEEE------
Confidence 7899999999863222 23699999874222111 111122334444433
Q ss_pred EEEEcccCcccCeEEEEEEecCCC
Q psy7941 101 TLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 101 ~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
.|.+. ..+.+.|+|++.+.+.
T Consensus 64 ~l~v~---~~~~~~ytC~V~H~~~ 84 (93)
T cd07698 64 TLEVP---PEDKARYSCRVEHSGL 84 (93)
T ss_pred EEEEC---CCCCCEEEEEEEeCCC
Confidence 55553 4478999999977544
No 319
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=98.01 E-value=5.4e-05 Score=47.20 Aligned_cols=73 Identities=16% Similarity=0.316 Sum_probs=44.9
Q ss_pred ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeee--eeeeEeecCccEEEEEcCCCe
Q psy7941 22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLA--IHEHVITNNARLSVTHNDANT 99 (238)
Q Consensus 22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 99 (238)
.++.+.|.|.+.+.-+. ...+.|++++..+... .......+++.|....
T Consensus 13 ~~~~~~L~C~a~gFyP~------------------------~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S----- 63 (94)
T cd05847 13 TSETIQLLCLISGYTPG------------------------TIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTS----- 63 (94)
T ss_pred CCCCEEEEEEEEeEECC------------------------CCEEEEEECCEECcCceeecccEECCCCcEEEEE-----
Confidence 56778999999864332 3469999987654221 1122233445565544
Q ss_pred EEEEEcccCcccCeEEEEEEecCCC
Q psy7941 100 WTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 100 ~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
.|.+..-...+...|.|++.+.+.
T Consensus 64 -~L~v~~~~w~~~~~ytC~V~H~~~ 87 (94)
T cd05847 64 -ELNVTQEDWKSGKTYTCKVTHQGT 87 (94)
T ss_pred -EEEEchHHhcCCCeEEEEEEECCe
Confidence 666654433456799999977543
No 320
>KOG3515|consensus
Probab=97.97 E-value=2e-05 Score=65.87 Aligned_cols=168 Identities=15% Similarity=0.245 Sum_probs=92.5
Q ss_pred eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeee-eeeeEeecCccEEEEEcC
Q psy7941 18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLA-IHEHVITNNARLSVTHND 96 (238)
Q Consensus 18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 96 (238)
....+|+.+.|.|.+. .++|.+.+.|+++....... .... ....+...
T Consensus 216 qsF~~g~~inlvc~~~-------------------------gg~P~~~~~w~~~s~~~~~~sl~~~---~~sg~~v~--- 264 (741)
T KOG3515|consen 216 QSFTEGQTINLVCNAQ-------------------------GGNPSQQQTWYKDSRPQSESSLLSQ---EPSGDTVS--- 264 (741)
T ss_pred CcccccceEEEEehhh-------------------------cCCcchhhhhccccccchhhhcccC---CCCCCccc---
Confidence 4577899999999653 35668889999987654322 0000 01111111
Q ss_pred CCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEc-cccCCeEEEEeC
Q psy7941 97 ANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK-GYPTPKITWRRE 175 (238)
Q Consensus 97 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~ 175 (238)
.++.+..-...+.-...|.+.+ .......+.+..++..... ......+..|+...+.|... .+|.+.+.|+++
T Consensus 265 ---~~~~~~~~r~~~~~~~kc~a~n--~~~~~~~tav~~~~~~~~I-st~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~ 338 (741)
T KOG3515|consen 265 ---STLVLRVGRQDLQAQLKCKASN--LLAASQITAVQVKPTAVPI-STSDSGLSSGRSARSSCVSSSSKPPAHIAWYKD 338 (741)
T ss_pred ---ccccccccccchhhhhhccccC--ccccceeeecccccccccc-cCcccccccccccccceeccCCCCccceeeecc
Confidence 1444444444555677899876 2222333444433332211 12233467788899999874 488889999994
Q ss_pred CCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 176 DNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
......................-.+..-...+.|.|.|+|.+.+...
T Consensus 339 ~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~ 385 (741)
T KOG3515|consen 339 TKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLEL 385 (741)
T ss_pred CcccccccCcccCCCcccceeeEEeeecccchhcCceEEcccccccc
Confidence 33222211111111111111122344456667888999999998775
No 321
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.93 E-value=0.00011 Score=45.78 Aligned_cols=67 Identities=22% Similarity=0.359 Sum_probs=37.4
Q ss_pred CCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCCC--CcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 153 GGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPPS--SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 153 g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
++.+.|.|.+.| +|.. .++|.+++............ .........+.| .+...+.+.|+|.+.+...
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l---~v~~~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTL---EVPPEDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEE---EECCCCCCEEEEEEEeCCC
Confidence 677999999999 5665 89999944222211110000 000001111123 3444567799999998764
No 322
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.93 E-value=2.7e-05 Score=45.23 Aligned_cols=65 Identities=32% Similarity=0.558 Sum_probs=42.0
Q ss_pred EEEEEEEccccCCeEEEEeCCCeeeEeecCC-CCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNP-PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221 (238)
Q Consensus 156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~ 221 (238)
+.|.|.+.+.+...+.|++.+ ......... .............|.+..+...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNG-KPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECC-EECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 368999988777799999943 322111100 00111123334468888999999999999998866
No 323
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.91 E-value=0.00033 Score=43.78 Aligned_cols=76 Identities=20% Similarity=0.326 Sum_probs=45.0
Q ss_pred cEEEEEEEcc-ccCCeEEEEeCCC---eeeEee-c--C----CCCCcceEEE----eeceEEEEEeecCCCeEEEEEeee
Q psy7941 155 SAKLVCKAKG-YPTPKITWRREDN---KEIIVR-S--N----PPSSQKVFSV----ESEVLSLTKVTRSEMGAYQCIAAN 219 (238)
Q Consensus 155 ~~~l~C~~~~-~p~~~~~W~~~~~---~~~~~~-~--~----~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~~~n 219 (238)
++.|.|.... .....++|.+.++ ..+..- . . ..-..+.... .+.+|.|.++..+|.|.|+|.+..
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t 81 (96)
T cd05889 2 KMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVT 81 (96)
T ss_pred CEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEEe
Confidence 5789998753 3455789987432 111110 0 0 0111121111 246899999999999999999976
Q ss_pred C-CCCCccceEEE
Q psy7941 220 G-VPPTVSKRLML 231 (238)
Q Consensus 220 ~-~g~~~~~~~~l 231 (238)
- .| ...+.+.|
T Consensus 82 ~P~g-~~~~~i~~ 93 (96)
T cd05889 82 YPQG-SWEKVIEV 93 (96)
T ss_pred CCCC-CeEEEEEE
Confidence 4 56 43555543
No 324
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.90 E-value=7e-05 Score=48.86 Aligned_cols=75 Identities=16% Similarity=0.315 Sum_probs=47.9
Q ss_pred CCceeecCCCcEEEEEEEcc-ccCCeEEEEeCCC--eee-Eeec-C---CCCCcceEEE-----eeceEEEEEeecCCCe
Q psy7941 145 SGDMMVPEGGSAKLVCKAKG-YPTPKITWRREDN--KEI-IVRS-N---PPSSQKVFSV-----ESEVLSLTKVTRSEMG 211 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~~--~~~-~~~~-~---~~~~~~~~~~-----~~~~l~i~~~~~~d~G 211 (238)
+..+.+..|+++.|.|.... .....+.|++... .+. .... . .....+.... ....|.|.+++.+|+|
T Consensus 6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg 85 (116)
T cd07706 6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSA 85 (116)
T ss_pred CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCE
Confidence 34567889999999999865 3456799998422 111 1110 0 1111222111 1347999999999999
Q ss_pred EEEEEeee
Q psy7941 212 AYQCIAAN 219 (238)
Q Consensus 212 ~y~C~~~n 219 (238)
.|.|.+..
T Consensus 86 ~Y~C~~~~ 93 (116)
T cd07706 86 KYFCALST 93 (116)
T ss_pred EEEEEEEC
Confidence 99999985
No 325
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.88 E-value=0.00017 Score=43.93 Aligned_cols=70 Identities=20% Similarity=0.428 Sum_probs=46.1
Q ss_pred ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee--eeeEeecCccEEEEEcCCCe
Q psy7941 22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI--HEHVITNNARLSVTHNDANT 99 (238)
Q Consensus 22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 99 (238)
.++++.|.|.+.+..+. ...|.|++++..+.... .......++.|.+.+
T Consensus 7 ~~~~~~L~C~v~~f~P~------------------------~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s----- 57 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPK------------------------DITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTS----- 57 (83)
T ss_dssp STSEEEEEEEEEEEBSS------------------------TEEEEEEETTEEETTTEEEEEEEEETTSEEEEEE-----
T ss_pred CCCCEEEEEEEEEEECC------------------------CcEEEEEeccceeeeeeeecccccccccceeeeE-----
Confidence 38899999999875433 33699999876543211 112224567777665
Q ss_pred EEEEEcccCcccCeEEEEEEecCCC
Q psy7941 100 WTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 100 ~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
.|.+. ..+...|.|.+.+...
T Consensus 58 -~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 58 -SLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp -EEEEE---TTTTGGEEEEEEETTS
T ss_pred -EEEec---CCCCCEEEEEEEECCC
Confidence 66665 5566699999987654
No 326
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.88 E-value=0.00013 Score=47.21 Aligned_cols=91 Identities=14% Similarity=0.319 Sum_probs=51.6
Q ss_pred ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee--eeEee-cCcc
Q psy7941 13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH--EHVIT-NNAR 89 (238)
Q Consensus 13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~--~~~~~-~~~~ 89 (238)
.++.......++.++|.|.+.+.-+. ...+.|++++..+..... ..... +++.
T Consensus 8 ~~ps~~e~~~~~~~tL~Cla~gFyP~------------------------~I~V~W~kng~~l~~g~~~~~~~~~~~~gT 63 (115)
T cd05769 8 FPPSEAEIRNKRKATLVCLATGFYPD------------------------HVSLSWKVNGKEVTDGVATDPQALRENTST 63 (115)
T ss_pred ECcChHHhccCCCcEEEEEEEeEeCC------------------------CcEEEEEECCEECCCCcccccceecCCCCe
Confidence 34444445567889999999864332 246999998765432111 01111 1245
Q ss_pred EEEEEcCCCeEEEEEcccCccc-CeEEEEEEecCCCcceeeEEEE
Q psy7941 90 LSVTHNDANTWTLNIRSVRRED-RGYYMCQVNTNPMTKQMAFLEV 133 (238)
Q Consensus 90 ~~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~~~~~~~~~~~~~l~v 133 (238)
|...+ .|.+......+ ...|+|.+.+.+.......-.+
T Consensus 64 Ys~~S------~L~v~~~~w~~~~~~ytC~V~H~g~~~~~~~~~~ 102 (115)
T cd05769 64 YSISS------RLRVSATEWFNPRNTFTCIVQFYGGTDTDKWQSI 102 (115)
T ss_pred EEEEE------EEEEChHHhccCCCeEEEEEEEeCCccceeeeee
Confidence 55544 66665443333 5699999987655444433333
No 327
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.86 E-value=6.1e-05 Score=48.07 Aligned_cols=70 Identities=20% Similarity=0.331 Sum_probs=44.0
Q ss_pred ecCCCcEEEEEEEccccCCeEEEEeCCCe----e--eEeecCCCC---------CcceEE---EeeceEEEEEeecCCCe
Q psy7941 150 VPEGGSAKLVCKAKGYPTPKITWRREDNK----E--IIVRSNPPS---------SQKVFS---VESEVLSLTKVTRSEMG 211 (238)
Q Consensus 150 ~~~g~~~~l~C~~~~~p~~~~~W~~~~~~----~--~~~~~~~~~---------~~~~~~---~~~~~l~i~~~~~~d~G 211 (238)
+..|++++|.|.........+.|++.... + +........ ...... .....|.|.+++.+|+|
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg 82 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG 82 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence 57899999999986554557999984422 1 111110000 111111 12336999999999999
Q ss_pred EEEEEeee
Q psy7941 212 AYQCIAAN 219 (238)
Q Consensus 212 ~y~C~~~n 219 (238)
.|.|.+.+
T Consensus 83 tY~Ca~~~ 90 (104)
T cd05720 83 YYFCSVAS 90 (104)
T ss_pred EEEEEEcc
Confidence 99999864
No 328
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.86 E-value=5.3e-05 Score=46.82 Aligned_cols=68 Identities=28% Similarity=0.554 Sum_probs=38.9
Q ss_pred CCcEEEEEEEc-cccCCeEEEEeCCCeeeEe--ecCCCCCcceEEEeeceEEEEEeecCCC-eEEEEEeeeCCC
Q psy7941 153 GGSAKLVCKAK-GYPTPKITWRREDNKEIIV--RSNPPSSQKVFSVESEVLSLTKVTRSEM-GAYQCIAANGVP 222 (238)
Q Consensus 153 g~~~~l~C~~~-~~p~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~-G~y~C~~~n~~g 222 (238)
|+.+.+.|.+. ++|.|.++|+.++...... ........... ...+.|.+. +..+|. ..++|.|.+..-
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~-~~~S~l~~~-~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLF-TVSSTLTLT-PTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTE-EEEEEEEEE-TTGGGTTEEEEEEEEETTC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcc-eEEEEEEEE-cChHHCCeEEEEEEECCcc
Confidence 67899999875 5999999999955444111 11001111111 112245554 344444 499999999865
No 329
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.86 E-value=0.00034 Score=41.64 Aligned_cols=54 Identities=15% Similarity=0.377 Sum_probs=33.2
Q ss_pred ceEEEEeCCceeeeeee-e-eEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941 64 MKVAWIKADTKAVLAIH-E-HVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 64 ~~~~W~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
..+.|+|++..+..... . .....++.|...+ .|.+......+...|+|++.+.+
T Consensus 16 i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s------~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 16 ITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSS------YLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred CEEEEEECCEECCCCEEECceEECCCCCEEEEE------EEEEccccCCCCCEEEEEEEEcC
Confidence 47999998764322111 1 1122455666554 67776656677789999997654
No 330
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.82 E-value=0.00019 Score=41.46 Aligned_cols=55 Identities=22% Similarity=0.367 Sum_probs=33.5
Q ss_pred CceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941 63 AMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 63 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
...+.|++.+.......... .............|.|.++...|.|.|.|.+.+..
T Consensus 12 ~~~~~W~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 12 PPTITWLKNGKPLPSSVLTR------VRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CCcEEEEECCEECCCcccEE------eccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 55799999765432211110 00011111234489999999999999999996644
No 331
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.82 E-value=0.00016 Score=47.32 Aligned_cols=76 Identities=12% Similarity=0.141 Sum_probs=47.0
Q ss_pred CCceeecCCCcEEEEEEEcccc------CCeEEEEeCCCe----e-eEeecC-----CCCCcceEE-----EeeceEEEE
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYP------TPKITWRREDNK----E-IIVRSN-----PPSSQKVFS-----VESEVLSLT 203 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p------~~~~~W~~~~~~----~-~~~~~~-----~~~~~~~~~-----~~~~~l~i~ 203 (238)
+..+.+..|+.++|.|...... ...+.|++.... . ...... .....+... .....|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 4456788999999999864321 236999985422 1 111110 011112111 123479999
Q ss_pred EeecCCCeEEEEEeeeC
Q psy7941 204 KVTRSEMGAYQCIAANG 220 (238)
Q Consensus 204 ~~~~~d~G~y~C~~~n~ 220 (238)
+++.+|+|.|.|.+...
T Consensus 86 ~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 86 DAQPEDSGKYFFRVELG 102 (119)
T ss_pred cCChhhCeEEEEEEEcC
Confidence 99999999999998653
No 332
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.81 E-value=0.0007 Score=42.22 Aligned_cols=58 Identities=9% Similarity=0.212 Sum_probs=34.8
Q ss_pred cCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 59 TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 59 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
.++|.+.|+|+++..... ........++++...+ .|.+......|...|+|++.+...
T Consensus 26 ~gkPaa~IsW~~~~~g~~--~~~~~~~~~gt~tv~S------~l~~~P~~~d~Gk~ltC~v~h~al 83 (95)
T cd07703 26 NGRPPARISWSSTLGGNA--NTTSKENGDGTVTVTS------EYSLVPTPEANGKEVTCKVEHETL 83 (95)
T ss_pred CCCCCcEEEEEcCCCCCe--eEEEEeCCCCCEEEEE------EEEEecCHHHCCCEEEEEEeCccc
Confidence 356788999999732211 1111122244555544 777766656666799999987543
No 333
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.81 E-value=0.00011 Score=46.55 Aligned_cols=82 Identities=13% Similarity=0.267 Sum_probs=46.8
Q ss_pred ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee-eeeE--ee--cC
Q psy7941 13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI-HEHV--IT--NN 87 (238)
Q Consensus 13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~-~~~~--~~--~~ 87 (238)
.++....+..|+.++|.|.+.+.-+. ...+.|++++....... .... .. .+
T Consensus 6 ~~p~~~~~~~~~~~tL~C~a~gFyP~------------------------~i~v~W~k~g~~~~~~~~~~~~~~~~~~~d 61 (102)
T cd05768 6 LPPPSEELSLQETATLTCLVKGFSPS------------------------DIFVKWLQNGQPLSKQKYVTTAPMQEPGGN 61 (102)
T ss_pred eCcChHHhCcCCceEEEEEEeeEeCC------------------------CCEEEEEECCEECCcccccccCcccccCCC
Confidence 34444445567899999999864332 34689999876532211 0000 11 13
Q ss_pred ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
+.|.+.. .|.+..-...+...|+|.+.+.+.
T Consensus 62 gTy~~~s------~L~v~~~~w~~~~~ytC~V~H~~l 92 (102)
T cd05768 62 ESYFLYS------KLTVSAEDWNAGDVFTCVVGHEAL 92 (102)
T ss_pred CeEEEEE------EEEEcHHHhcCCCcEEEEeEeCCC
Confidence 4555544 566633323355689999977543
No 334
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.80 E-value=0.00043 Score=43.17 Aligned_cols=71 Identities=14% Similarity=0.264 Sum_probs=44.3
Q ss_pred EecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeee--eeeeEeecCccEEEEEcCCC
Q psy7941 21 AQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLA--IHEHVITNNARLSVTHNDAN 98 (238)
Q Consensus 21 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 98 (238)
..|+.++|.|.+.+.-+. ...+.|++++...... ........++.|....
T Consensus 12 ~~~~~~~L~C~~~gFyP~------------------------~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s---- 63 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPP------------------------EITVKWFKNGQEETEGVVSTELIPNGDWTYQILV---- 63 (94)
T ss_pred cCCCCeEEEEEEeeecCC------------------------CCEEEEEECCeecCCCceecceEECCCCcEEEEE----
Confidence 368999999999864332 3468999987664331 1122222344565544
Q ss_pred eEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 99 TWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 99 ~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
.|.+. .++...|.|++.+.+.
T Consensus 64 --~L~~~---~~~~~~ysC~V~H~~l 84 (94)
T cd05766 64 --MLETT---PSRGDTYTCVVEHSSL 84 (94)
T ss_pred --EEEEc---CCCCCEEEEEEEeCCC
Confidence 55543 4567799999987654
No 335
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.77 E-value=0.00073 Score=42.10 Aligned_cols=70 Identities=19% Similarity=0.304 Sum_probs=43.3
Q ss_pred ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeee--eeeeeEeecCccEEEEEcCCCe
Q psy7941 22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVL--AIHEHVITNNARLSVTHNDANT 99 (238)
Q Consensus 22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 99 (238)
.|+..+|.|.+.+.-+. ...++|++++..+.. .........++.|....
T Consensus 14 ~~~~~tL~C~a~gFyP~------------------------~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s----- 64 (94)
T cd05767 14 LGEPNTLICFVDNFFPP------------------------VLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFS----- 64 (94)
T ss_pred CCCCeEEEEEEEEEECC------------------------cCEEEEEECCeEccCceEEeeeEeCCCCcEEEEE-----
Confidence 46668999999864332 346899998765432 11222233455565544
Q ss_pred EEEEEcccCcccCeEEEEEEecCCC
Q psy7941 100 WTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 100 ~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
.|.+. .++...|+|.+.+.+.
T Consensus 65 -~L~v~---~~~~~~ytC~V~H~~l 85 (94)
T cd05767 65 -YLNFT---PEEGDIYSCIVEHWGL 85 (94)
T ss_pred -EEEEE---CCCCCeEEEEEEeCCC
Confidence 56554 3566799999977543
No 336
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.76 E-value=0.0002 Score=44.63 Aligned_cols=69 Identities=16% Similarity=0.324 Sum_probs=39.0
Q ss_pred CCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecC---CC-CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 152 EGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSN---PP-SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 152 ~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~---~~-~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
.++.+.|.|.+.| +|.. .++|.+ ++..+..... .. ..... ....+.|.+..-...+...|+|.+.+...
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~-dg~~~~~~~~~s~~~~~~~~T-y~~~S~L~v~~~~w~~~~~ytC~V~H~~~ 87 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLV-DGQVATLVAASTAPQKEEGST-FSTTSELNVTQEDWKSGKTYTCKVTHQGT 87 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEE-CCEECcCceeecccEECCCCc-EEEEEEEEEchHHhcCCCeEEEEEEECCe
Confidence 3466899999999 6764 899999 5544311110 00 01111 11222444443333345699999999764
No 337
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.75 E-value=0.00019 Score=42.79 Aligned_cols=65 Identities=28% Similarity=0.473 Sum_probs=36.3
Q ss_pred EEEEEEEcc-ccCC-eEEEEeCCCeeeEee-cCCC---CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 156 AKLVCKAKG-YPTP-KITWRREDNKEIIVR-SNPP---SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 156 ~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~-~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
+.|.|.+.| +|.. .+.|++ ++..+... .... ..... ....+.|.+.....++...|+|.+.+...
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k-~g~~~~~~~~~~~~~~~~~gt-~~~~s~L~v~~~~~~~~~~~tC~V~H~~~ 72 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLR-NGQEVTSGVSTTDPLKNSDGT-YFLSSYLTVSASTWESGDTYTCQVTHEGL 72 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEE-CCEECCCCEEECceEECCCCC-EEEEEEEEEccccCCCCCEEEEEEEEcCC
Confidence 689999998 6664 899999 55432111 0000 00111 11122454444344555699999998754
No 338
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.74 E-value=0.00022 Score=44.67 Aligned_cols=81 Identities=15% Similarity=0.141 Sum_probs=47.9
Q ss_pred ccCceeEEEecCCEEEEeEEecCC-CceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEE
Q psy7941 13 YPLENVTIAQGRDAIFTCVVNNLG-GHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLS 91 (238)
Q Consensus 13 ~~~~~~~v~~g~~~~l~C~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 91 (238)
.+|.......++.+.|.|.+.+.. .. ...+.|.++++. ...........++.|.
T Consensus 9 ~pPs~e~l~~~~~atLtClV~~f~~P~------------------------~i~V~W~~~g~~-~~~~t~~~~~~dgTys 63 (99)
T cd04986 9 QRPALEDLLLGSSASLTCTLSGLRDPE------------------------GAVFTWTPSGGK-EAVQTSAESDQCGCYS 63 (99)
T ss_pred ECcChHHhCcCCccEEEEEEeccCCCC------------------------CeEEEEEECCcc-CcEEcCcccCCCCCEE
Confidence 444444455788999999998754 22 346999998765 2111112223355666
Q ss_pred EEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 92 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
+.+ .|.+..-.-.....|+|.+.+...
T Consensus 64 ~~S------~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 64 VSS------VLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred EEE------EEEeCHHHhcCCCeEEEEEECCCc
Confidence 655 666552222333579999977543
No 339
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.73 E-value=0.00058 Score=42.66 Aligned_cols=58 Identities=12% Similarity=0.210 Sum_probs=33.4
Q ss_pred cCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 59 TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 59 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
.++|.++|.|+++..... ........++.+...+ .|.+......|...|+|++.+...
T Consensus 26 ~gkP~a~ItW~~~~~~~~--~~~~~~~~~g~~tv~S------~l~~~p~~~d~G~~~tC~v~h~~l 83 (95)
T cd05719 26 NGKPPATISWETTLGGEA--ETQSKENPNGTVTVTS------EYRLVPSREANGKELTCVVSHPTL 83 (95)
T ss_pred CCcCCCEEEEEeCCCCcc--eeEeecCCCCCEEEEE------EEEEecCHHHCCCEEEEEEeCccc
Confidence 356789999999621111 0111112233455444 677765555566699999977543
No 340
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.70 E-value=0.0003 Score=43.87 Aligned_cols=67 Identities=19% Similarity=0.367 Sum_probs=38.6
Q ss_pred cCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEee-cCCC---CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 151 PEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVR-SNPP---SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 151 ~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~-~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
..|..+.|.|.+.| +|.. .+.|++ ++..+... .... ...... ...+.|. +..++...|+|.+.+...
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~-~g~~~~~~~~~~~~~~~~dgTy-~~~s~L~---~~~~~~~~ysC~V~H~~l 84 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFK-NGQEETEGVVSTELIPNGDWTY-QILVMLE---TTPSRGDTYTCVVEHSSL 84 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEE-CCeecCCCceecceEECCCCcE-EEEEEEE---EcCCCCCEEEEEEEeCCC
Confidence 35788999999999 6766 899999 44443221 0000 000011 1111233 333445599999999765
No 341
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.70 E-value=0.0063 Score=47.43 Aligned_cols=79 Identities=24% Similarity=0.480 Sum_probs=51.2
Q ss_pred CCeEEEEEcccCcccCeEEEEEEec---CCCcceeeEEEEE-cCCcccccccCCceeecCCCcEEEEEEEcc-ccCC--e
Q psy7941 97 ANTWTLNIRSVRREDRGYYMCQVNT---NPMTKQMAFLEVV-IPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTP--K 169 (238)
Q Consensus 97 ~~~~~L~i~~~~~~d~G~Y~C~~~~---~~~~~~~~~l~v~-~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--~ 169 (238)
..++.|.|.++...|+|.|+-...+ .....+...+.+. -+|.+..... .+..|+...-.|.+.. +|+- .
T Consensus 204 t~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~----PVL~Ge~YkAtC~vAnYYPP~Svr 279 (490)
T PHA03271 204 TNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP----PVLSGENYKASCIVRHFYPPGSVY 279 (490)
T ss_pred cceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC----ccccCCCceEEEEeeeecCCCceE
Confidence 3678999999999999966444332 1222223333333 4555554433 2678999999999977 5544 7
Q ss_pred EEEEeCCCeee
Q psy7941 170 ITWRREDNKEI 180 (238)
Q Consensus 170 ~~W~~~~~~~~ 180 (238)
+.|+++ +...
T Consensus 280 lrWf~n-G~~V 289 (490)
T PHA03271 280 VSWRQN-GNIA 289 (490)
T ss_pred EEEEeC-Cccc
Confidence 999995 5444
No 342
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.69 E-value=0.00018 Score=45.52 Aligned_cols=72 Identities=22% Similarity=0.361 Sum_probs=39.6
Q ss_pred ecCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecC--C-CCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 150 VPEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSN--P-PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 150 ~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~--~-~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
...++.+.|.|.+.| +|.. .+.|++ ++..+..... . .....-.....+.|.+..-...+...|+|.+.+...
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~-~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l 90 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKV-DGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL 90 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEE-CCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence 334677999999998 7744 899999 5544421110 0 000000111122344433333345599999999764
No 343
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.69 E-value=0.00075 Score=42.08 Aligned_cols=66 Identities=17% Similarity=0.242 Sum_probs=37.4
Q ss_pred CcEEEEEEEc-cccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCe-EEEEEeeeCCC
Q psy7941 154 GSAKLVCKAK-GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG-AYQCIAANGVP 222 (238)
Q Consensus 154 ~~~~l~C~~~-~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g 222 (238)
....+.|.+. |.|.+.|+|+++............. .... .-.+.|.+. ...+|.| .|+|.+.|..-
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~-~gt~-tv~S~l~~~-P~~~d~Gk~ltC~v~h~al 83 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENG-DGTV-TVTSEYSLV-PTPEANGKEVTCKVEHETL 83 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCC-CCCE-EEEEEEEEe-cCHHHCCCEEEEEEeCccc
Confidence 4578899885 5999999999852222111111111 1111 111234443 4455666 99999999864
No 344
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.69 E-value=0.00075 Score=42.14 Aligned_cols=77 Identities=16% Similarity=0.264 Sum_probs=42.0
Q ss_pred CCcEEEEEEE-ccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCe-EEEEEeeeCCC-CCccceE
Q psy7941 153 GGSAKLVCKA-KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG-AYQCIAANGVP-PTVSKRL 229 (238)
Q Consensus 153 g~~~~l~C~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g-~~~~~~~ 229 (238)
.....+.|.+ .|+|.+.|+|+++........... ..... ..-.+.|.+ ....+|.| .|+|.+.|..- .....++
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~-~~~g~-~tv~S~l~~-~p~~~d~G~~~tC~v~h~~l~~~~~~~~ 91 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTLGGEAETQSKE-NPNGT-VTVTSEYRL-VPSREANGKELTCVVSHPTLQEPQRFSV 91 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCCCCcceeEeec-CCCCC-EEEEEEEEE-ecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence 3457889998 569999999999421111111100 00111 111223444 34556666 99999999874 2334444
Q ss_pred EEE
Q psy7941 230 MLH 232 (238)
Q Consensus 230 ~l~ 232 (238)
.|.
T Consensus 92 ~L~ 94 (95)
T cd05719 92 TLN 94 (95)
T ss_pred Eee
Confidence 443
No 345
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.68 E-value=0.00039 Score=45.35 Aligned_cols=75 Identities=25% Similarity=0.387 Sum_probs=46.2
Q ss_pred CCceeecCCCcEEEEEEEcccc--CCeEEEEeCCC--ee--eEeecC--------CCCCcceEEE--e---eceEEEEEe
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYP--TPKITWRREDN--KE--IIVRSN--------PPSSQKVFSV--E---SEVLSLTKV 205 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~~~--~~--~~~~~~--------~~~~~~~~~~--~---~~~l~i~~~ 205 (238)
+..+.+..|+.++|.|...+.. ...+.|++... .+ +..... .....+.... . ...|.|.++
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 83 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL 83 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence 3446788999999999876532 45799998432 11 111100 0011111111 1 126899999
Q ss_pred ecCCCeEEEEEeee
Q psy7941 206 TRSEMGAYQCIAAN 219 (238)
Q Consensus 206 ~~~d~G~y~C~~~n 219 (238)
..+|+|.|.|.+..
T Consensus 84 ~~~Dsa~YyCa~~~ 97 (117)
T cd04981 84 TPEDTAVYYCARGL 97 (117)
T ss_pred CHHHCEEEEEEEEc
Confidence 99999999999864
No 346
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.67 E-value=0.0009 Score=41.70 Aligned_cols=83 Identities=17% Similarity=0.329 Sum_probs=46.0
Q ss_pred ceeecCCCcEEE-EEEE-ccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCe-EEEEEeeeCCC-
Q psy7941 147 DMMVPEGGSAKL-VCKA-KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG-AYQCIAANGVP- 222 (238)
Q Consensus 147 ~~~~~~g~~~~l-~C~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g- 222 (238)
...+.+|..+.+ .|.+ .|.|.+.|+|+.+............. ....... +.+.+. ..++|.| .++|.+.+..-
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~-ngT~TV~-S~~~l~-p~r~d~G~~vtC~V~H~al~ 86 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHP-NGTTTVT-SEYIWV-PSRHANGHPLTCVVSHPALQ 86 (97)
T ss_pred eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCC-CCCEEEE-EEEEEE-eCHHHCCcEEEEEEeCcccC
Confidence 345677888888 8987 56999999999853222211111111 1111111 234443 3445555 99999999864
Q ss_pred CCccceEEEE
Q psy7941 223 PTVSKRLMLH 232 (238)
Q Consensus 223 ~~~~~~~~l~ 232 (238)
.....+..|.
T Consensus 87 ~~~~~~~~L~ 96 (97)
T cd07704 87 QDFRITHILN 96 (97)
T ss_pred CCceeeEEee
Confidence 2333444443
No 347
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.65 E-value=0.00041 Score=43.42 Aligned_cols=72 Identities=17% Similarity=0.289 Sum_probs=38.9
Q ss_pred ecCCCcEEEEEEEccc--cCC-eEEEEeCCCeeeEeecC-CC-CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 150 VPEGGSAKLVCKAKGY--PTP-KITWRREDNKEIIVRSN-PP-SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 150 ~~~g~~~~l~C~~~~~--p~~-~~~W~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
+..++.+.|.|.+.|. |.. .++|.++++........ .. ..... ....+.|.+..-...+.-.|+|.+.+...
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgt-y~~~s~l~v~~~~w~~g~~ysC~V~H~~l 87 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNAT-LSVTSTLNVSTDDWISGDTFQCKVTHPDL 87 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCC-EEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence 4557889999999887 544 79999955433221111 00 00111 11111333332222223389999999764
No 348
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.63 E-value=0.0011 Score=41.34 Aligned_cols=73 Identities=16% Similarity=0.358 Sum_probs=42.2
Q ss_pred EEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-eeEeecCccEEEEEcCC
Q psy7941 19 TIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-EHVITNNARLSVTHNDA 97 (238)
Q Consensus 19 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 97 (238)
....++.++|.|.+.+.-+. ...+.|++++........ .....+++.|...+
T Consensus 12 e~~~~~~~tL~C~a~gFyP~------------------------~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S--- 64 (96)
T cd07697 12 EIEKQGQGIYLCLLENFFPD------------------------VIQVHWREGNSPSILGSQKSEKDKDNDVYSTTS--- 64 (96)
T ss_pred HHccCCCEEEEEEEEEEeCC------------------------CeEEEEEECCEECcCCeEeccEecCCCEEEEEE---
Confidence 34456789999999874333 345899998765432111 11222233454443
Q ss_pred CeEEEEEcccCcc-cCeEEEEEEecCCC
Q psy7941 98 NTWTLNIRSVRRE-DRGYYMCQVNTNPM 124 (238)
Q Consensus 98 ~~~~L~i~~~~~~-d~G~Y~C~~~~~~~ 124 (238)
.|.+. .+ ....|+|.+.+.+.
T Consensus 65 ---~L~vt---~~~~~~~ysC~V~H~g~ 86 (96)
T cd07697 65 ---WLTVT---KDSLGKKFRCIYKHEGI 86 (96)
T ss_pred ---EEEEC---chhCCCeEEEEEEECCC
Confidence 55543 33 34469999987543
No 349
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.63 E-value=0.00036 Score=45.17 Aligned_cols=70 Identities=21% Similarity=0.333 Sum_probs=40.3
Q ss_pred CCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecC---CCCCcc-eEEEeeceEEEEEeecCCC-eEEEEEeeeCCC
Q psy7941 152 EGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSN---PPSSQK-VFSVESEVLSLTKVTRSEM-GAYQCIAANGVP 222 (238)
Q Consensus 152 ~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~---~~~~~~-~~~~~~~~l~i~~~~~~d~-G~y~C~~~n~~g 222 (238)
.++.+.|.|.+.| +|.. .+.|.+ ++..+..... ...... -.....+.|.+..-+..+. ..|+|.+.+...
T Consensus 17 ~~~~~tL~Cla~gFyP~~I~V~W~k-ng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~ 93 (115)
T cd05769 17 NKRKATLVCLATGFYPDHVSLSWKV-NGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGG 93 (115)
T ss_pred cCCCcEEEEEEEeEeCCCcEEEEEE-CCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCC
Confidence 4667899999999 6765 899999 5544321110 000000 1112233455554444343 489999998765
No 350
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.61 E-value=0.00036 Score=43.69 Aligned_cols=72 Identities=24% Similarity=0.301 Sum_probs=40.2
Q ss_pred ecCCCcEEEEEEEcc-c-cCC-eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 150 VPEGGSAKLVCKAKG-Y-PTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 150 ~~~g~~~~l~C~~~~-~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
+..+..+.|.|.+.+ + |.. .+.|.++++..... ........-.....+.|.+..-.......|+|.+.+...
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~-t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQ-TSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEE-cCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 335778999999998 6 544 89999965431111 111111111122223455443333333479999999764
No 351
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.60 E-value=0.0019 Score=40.09 Aligned_cols=71 Identities=14% Similarity=0.320 Sum_probs=43.1
Q ss_pred EecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-eeEeecCccEEEEEcCCCe
Q psy7941 21 AQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-EHVITNNARLSVTHNDANT 99 (238)
Q Consensus 21 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 99 (238)
..|....|.|.+.+.-+. ...+.|++++..+..... ......+..|....
T Consensus 13 ~~g~~~~L~C~a~gFyP~------------------------~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s----- 63 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPP------------------------DIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLK----- 63 (93)
T ss_pred cCCCceEEEEEEEEEeCC------------------------CCEEEEEECCEECCCcEECcEEECCCCCEEEEE-----
Confidence 346667999999864333 346899998766431111 11123344555443
Q ss_pred EEEEEcccCcccCeEEEEEEecCCC
Q psy7941 100 WTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 100 ~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
.|.+ ...+...|.|.+.+.+.
T Consensus 64 -~l~~---~~~~~~~ysC~V~H~~l 84 (93)
T cd05770 64 -STEF---TPTKGDEYACRVRHNSM 84 (93)
T ss_pred -EEEE---CCCCCCeEEEEEEECCC
Confidence 4544 35678899999987543
No 352
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.56 E-value=0.00044 Score=43.86 Aligned_cols=69 Identities=14% Similarity=0.350 Sum_probs=38.7
Q ss_pred CCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecC----CCCC---cceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 152 EGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSN----PPSS---QKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 152 ~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~----~~~~---~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
.+..+.|.|.+.| +|.. .++|.+ ++..+..... .... ...+ ...+.|.+..-...+...|+|.+.+...
T Consensus 15 ~~~~~tL~C~a~gFyP~~i~v~W~k-~g~~~~~~~~~~~~~~~~~~~dgTy-~~~s~L~v~~~~w~~~~~ytC~V~H~~l 92 (102)
T cd05768 15 LQETATLTCLVKGFSPSDIFVKWLQ-NGQPLSKQKYVTTAPMQEPGGNESY-FLYSKLTVSAEDWNAGDVFTCVVGHEAL 92 (102)
T ss_pred cCCceEEEEEEeeEeCCCCEEEEEE-CCEECCcccccccCcccccCCCCeE-EEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence 4678999999999 6655 789999 4444321110 0000 1111 1122344432222344589999999764
No 353
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.54 E-value=0.00063 Score=42.37 Aligned_cols=66 Identities=20% Similarity=0.351 Sum_probs=36.8
Q ss_pred CCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecC----CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 152 EGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSN----PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 152 ~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
.+....|.|.+.| +|.. .++|.+ ++..+..... ....... ......|.+ ...+...|+|.+.+...
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~-~g~~~~~~~~~~~~~~~~Dgt-y~~~s~L~v---~~~~~~~ytC~V~H~~l 85 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLK-NGVPVTDGVSETRYYPRQDLS-FQKFSYLNF---TPEEGDIYSCIVEHWGL 85 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEE-CCeEccCceEEeeeEeCCCCc-EEEEEEEEE---ECCCCCeEEEEEEeCCC
Confidence 3556799999999 7755 899999 4444321100 0000111 111123433 33455599999998653
No 354
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.52 E-value=0.00078 Score=42.10 Aligned_cols=66 Identities=20% Similarity=0.475 Sum_probs=36.3
Q ss_pred CCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecC---CCCCcceEEEeeceEEEEEeecCCCe-EEEEEeeeCCC
Q psy7941 152 EGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSN---PPSSQKVFSVESEVLSLTKVTRSEMG-AYQCIAANGVP 222 (238)
Q Consensus 152 ~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g 222 (238)
.+..+.|.|.+.| +|.. .++|.+ ++..+..... ...... .....+.|.+ ..++.| .|+|.+.+...
T Consensus 15 ~~~~~tL~C~a~gFyP~~I~v~W~k-ng~~~~~~~~~~~~~~~~d-ty~~~S~L~v---t~~~~~~~ysC~V~H~g~ 86 (96)
T cd07697 15 KQGQGIYLCLLENFFPDVIQVHWRE-GNSPSILGSQKSEKDKDND-VYSTTSWLTV---TKDSLGKKFRCIYKHEGI 86 (96)
T ss_pred cCCCEEEEEEEEEEeCCCeEEEEEE-CCEECcCCeEeccEecCCC-EEEEEEEEEE---CchhCCCeEEEEEEECCC
Confidence 3567899999999 6755 899999 5544321100 000111 1122223433 332234 69999999553
No 355
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.51 E-value=0.0038 Score=38.95 Aligned_cols=78 Identities=17% Similarity=0.233 Sum_probs=51.8
Q ss_pred cCceeEEEecCCEEE-EeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEE
Q psy7941 14 PLENVTIAQGRDAIF-TCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSV 92 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l-~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 92 (238)
+-..+.+.+|+.+.+ .|.+. .++|+++|.|+.+..... . .......++.+.+
T Consensus 7 ~~~~~~~~~g~~~~vA~C~sa-------------------------~gkPaa~IsW~~~~~G~~-~-~~~~~~~ngT~TV 59 (97)
T cd07704 7 PGPSLLIDGGNGTTLAACCAA-------------------------EGRPAADVTWETNVYGTS-E-SHSQEHPNGTTTV 59 (97)
T ss_pred CCCeeEeecCcceeEEEEEcc-------------------------CCccCCEeEEeCCCCCcc-c-eeeecCCCCCEEE
Confidence 344566788999999 99986 356789999998633221 1 1112223456666
Q ss_pred EEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 93 THNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 93 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
.+ .|.+......|.-.++|++.+...
T Consensus 60 ~S------~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 60 TS------EYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred EE------EEEEEeCHHHCCcEEEEEEeCccc
Confidence 65 777766666677799999977543
No 356
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.48 E-value=0.0008 Score=41.79 Aligned_cols=66 Identities=18% Similarity=0.280 Sum_probs=37.8
Q ss_pred CCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEE---EEeecCCCeEEEEEeeeCCC
Q psy7941 152 EGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSL---TKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 152 ~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i---~~~~~~d~G~y~C~~~n~~g 222 (238)
.|....|.|.+.| +|.. .++|.+ ++..+. ... . .......+.+..+ ..+...+...|+|.+.+...
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~-dg~~~~-~~~--~-~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~l 84 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLK-NGVKIP-KVE--Q-SDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNSM 84 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEE-CCEECC-CcE--E-CcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECCC
Confidence 4556789999999 6655 899999 555443 111 0 0111111222221 13345556689999999653
No 357
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.47 E-value=0.00062 Score=40.92 Aligned_cols=63 Identities=22% Similarity=0.403 Sum_probs=36.7
Q ss_pred cEEEEEEEccccC--CeEEEEeCCC-e---eeEeec--C----C-CCCcceEE-----EeeceEEEEEeecCCCeEEEEE
Q psy7941 155 SAKLVCKAKGYPT--PKITWRREDN-K---EIIVRS--N----P-PSSQKVFS-----VESEVLSLTKVTRSEMGAYQCI 216 (238)
Q Consensus 155 ~~~l~C~~~~~p~--~~~~W~~~~~-~---~~~~~~--~----~-~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~ 216 (238)
++.|.|.+..... ..+.|++... . .+.... . . ....+... .....|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 3689998866443 3799987432 1 111110 0 0 11112211 1224799999999999999996
Q ss_pred e
Q psy7941 217 A 217 (238)
Q Consensus 217 ~ 217 (238)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 4
No 358
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.44 E-value=0.00059 Score=38.99 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=23.0
Q ss_pred EEEEcccCcccCeEEEEEEecCCCcceeeEEEEE
Q psy7941 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVV 134 (238)
Q Consensus 101 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~ 134 (238)
+|.+........|.|.|.+.+ ......|.|.
T Consensus 34 tlnLGs~~~DPRG~Y~C~~s~---~~~~~~LQVy 64 (69)
T cd07691 34 LLDLGSRINDPRGTYSCKESE---PNKEKTLQVY 64 (69)
T ss_pred EEeccCcccCCCcceEecCcc---CCCcEEEEEE
Confidence 888888888999999998854 2334456654
No 359
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.44 E-value=0.00033 Score=42.60 Aligned_cols=67 Identities=28% Similarity=0.555 Sum_probs=38.7
Q ss_pred cCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecC----CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 151 PEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSN----PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 151 ~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
..+..+.|.|.+.+ +|.. .+.|++ ++..+..... ....... ....+.|.+. ..+...|+|.+.+...
T Consensus 6 ~~~~~~~L~C~v~~f~P~~i~v~W~~-~~~~~~~~~~~~~~~~~~dgt-y~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 6 ELGGSVTLTCLVSGFYPKDITVTWLK-NGKEVTEGVETTPPPPNSDGT-YSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp HSTSEEEEEEEEEEEBSSTEEEEEEE-TTEEETTTEEEEEEEEETTSE-EEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred cCCCCEEEEEEEEEEECCCcEEEEEe-ccceeeeeeeecccccccccc-eeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 34788999999998 6755 899999 4443211000 0000111 1111234443 5555599999999765
No 360
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.43 E-value=0.0015 Score=40.76 Aligned_cols=71 Identities=8% Similarity=0.296 Sum_probs=41.6
Q ss_pred ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee--eeeEeecCccEEEEEcCCCe
Q psy7941 22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI--HEHVITNNARLSVTHNDANT 99 (238)
Q Consensus 22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 99 (238)
.++.+.|.|.+.+.-+. ...+.|++++.. .... ......+++.|....
T Consensus 15 ~~~~~~L~C~a~gFyP~------------------------~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s----- 64 (95)
T cd04985 15 SSDSVTLGCLATGFLPE------------------------PVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASS----- 64 (95)
T ss_pred CCCcEEEEEEEeeEECC------------------------CcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEE-----
Confidence 46779999999864333 346899998765 2111 111122245555544
Q ss_pred EEEEEcccCcccCeEEEEEEecCC
Q psy7941 100 WTLNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 100 ~~L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
.|.+....-.....|+|++.+.+
T Consensus 65 -~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 65 -QLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred -EEEEeHHHcCCCCcEEEEEEeCC
Confidence 55554322223568999998765
No 361
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=97.42 E-value=0.00092 Score=41.50 Aligned_cols=71 Identities=20% Similarity=0.322 Sum_probs=41.5
Q ss_pred ecCCCcEEEEEEEcc-ccC--CeEEEEeCCCeeeEeecCCCC-CcceEEEeeceEEEEEeecCCCe-EEEEEeeeCCC
Q psy7941 150 VPEGGSAKLVCKAKG-YPT--PKITWRREDNKEIIVRSNPPS-SQKVFSVESEVLSLTKVTRSEMG-AYQCIAANGVP 222 (238)
Q Consensus 150 ~~~g~~~~l~C~~~~-~p~--~~~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g 222 (238)
+..|..+++.|.+.+ +|. ..+.|++ +...+........ ...........+.+.. .++|.| +|+|.|.-..+
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~Llk-G~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l~ 87 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLK-GETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHID 87 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEec-CcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEeec
Confidence 467999999999976 776 4899998 4443332221100 0000001112334333 578888 99999985543
No 362
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.32 E-value=0.053 Score=42.73 Aligned_cols=73 Identities=19% Similarity=0.326 Sum_probs=51.4
Q ss_pred EEEEcccCcccCeEEEEEEecC-CCcce--eeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc-ccCC--eEEEEe
Q psy7941 101 TLNIRSVRREDRGYYMCQVNTN-PMTKQ--MAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTP--KITWRR 174 (238)
Q Consensus 101 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~--~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--~~~W~~ 174 (238)
.|.|..++...+|.|+=...+. ..... .+.+....+|.+.+...+ +.+|+...-.|.+.. ||.. .+.|++
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~P----vL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ 258 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHA----VLEGEPFGATCVAANYYPGDRAAFRWFE 258 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc----cccCCCceEEEEeeeecCCCceEEEEEe
Confidence 6999999999999999987442 22222 234455567776554333 678999999999976 5544 799999
Q ss_pred CCC
Q psy7941 175 EDN 177 (238)
Q Consensus 175 ~~~ 177 (238)
++.
T Consensus 259 ng~ 261 (466)
T PHA03270 259 GGD 261 (466)
T ss_pred CCc
Confidence 544
No 363
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.29 E-value=0.00051 Score=38.95 Aligned_cols=50 Identities=26% Similarity=0.482 Sum_probs=32.7
Q ss_pred CCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeee
Q psy7941 152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219 (238)
Q Consensus 152 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n 219 (238)
.|..++|.|+... ..+.|.+++ ..... .+..+.+.+.. ++.|.|.|.+.+
T Consensus 6 sGTtVtlTCP~~~---~~i~W~~n~-~~~~g-------------~~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 6 SGTTVTVTCPLSG---DDIKWKKND-QVSQG-------------SDEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred eccEEEEECCCCC---CCceEEeCC-ccCCC-------------CCceEEeeccC-CCCceEEEEeCC
Confidence 4889999998652 239999944 22211 22234444555 889999999963
No 364
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.22 E-value=0.0021 Score=36.76 Aligned_cols=60 Identities=25% Similarity=0.485 Sum_probs=40.0
Q ss_pred CCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEE
Q psy7941 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH 232 (238)
Q Consensus 153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~ 232 (238)
.+.+.|.|.+ .-+|.|++ +...... ....|.+.....+-.|.|.|.+++ .++...|.
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~-------------~~~tlnLGs~~~DPRG~Y~C~~s~-----~~~~~~LQ 62 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEILEV-------------SNTLLDLGSRINDPRGTYSCKESE-----PNKEKTLQ 62 (69)
T ss_pred CceEEEEecC----CCcEEEec-Ccccccc-------------cccEEeccCcccCCCcceEecCcc-----CCCcEEEE
Confidence 4578999965 24699999 5433211 144677777788889999999877 13444556
Q ss_pred EEe
Q psy7941 233 VHC 235 (238)
Q Consensus 233 V~~ 235 (238)
|.+
T Consensus 63 VyY 65 (69)
T cd07691 63 VYY 65 (69)
T ss_pred EEE
Confidence 654
No 365
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=97.21 E-value=0.00044 Score=45.27 Aligned_cols=82 Identities=18% Similarity=0.254 Sum_probs=41.7
Q ss_pred EEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE---eecCccEEEEEc
Q psy7941 19 TIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV---ITNNARLSVTHN 95 (238)
Q Consensus 19 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 95 (238)
...-++++.|+|.+.+..... .+.+.+.|..++........... .....+..+...
T Consensus 23 ~t~CN~tV~IPC~v~n~~~~n---------------------i~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l 81 (130)
T PF08204_consen 23 YTVCNDTVVIPCFVNNLEANN---------------------ISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISEL 81 (130)
T ss_dssp E-TT-SEEEE--BBSS---SS---------------------GGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGG
T ss_pred EEecCCCEEEEeEeccccccc---------------------cceEEEEEEECCeEEEEEcCccceecccCccccchhHh
Confidence 455788999999997643221 22556999998765443332111 111122233222
Q ss_pred CCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 96 DANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 96 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
..++++|.+.....- .|+|+|.+...
T Consensus 82 ~kG~aSL~~~~~~a~-~GnYTCeVt~~ 107 (130)
T PF08204_consen 82 LKGNASLKMDKSDAV-EGNYTCEVTEL 107 (130)
T ss_dssp GGTB--EEEEHHHHH--EEEEEEEEET
T ss_pred hCCCEEEEEcchhcc-ccceEEEEEec
Confidence 336668888875444 89999999653
No 366
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.17 E-value=0.0018 Score=40.44 Aligned_cols=68 Identities=21% Similarity=0.356 Sum_probs=35.6
Q ss_pred CCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEe-ecCCCCCc-ceEEEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941 153 GGSAKLVCKAKG-YPTP-KITWRREDNKEIIV-RSNPPSSQ-KVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221 (238)
Q Consensus 153 g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~-~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~ 221 (238)
++.+.|.|.+.| +|.. .++|.+ ++..... ........ .-.....+.|.+..-.......|+|.+.+..
T Consensus 16 ~~~~~L~C~a~gFyP~~i~vtW~k-~g~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 16 SDSVTLGCLATGFLPEPVTFTWNS-GSNSTSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCcEEEEEEEeeEECCCcEEEEeE-CCEECCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 566899999999 6655 899999 4543111 00000000 0011112234333222222448999999865
No 367
>PHA02633 hypothetical protein; Provisional
Probab=97.13 E-value=0.0012 Score=36.82 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=29.8
Q ss_pred eeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEe
Q psy7941 196 ESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHC 235 (238)
Q Consensus 196 ~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~ 235 (238)
.+..|.|.++..+|+|.|.|.+.|..- ....++.|.|..
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~-c~~~si~l~V~~ 54 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETY-SDMMKFDLCICL 54 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCe-eEEEEEEEEEee
Confidence 344688899999999999999998664 335566777654
No 368
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.13 E-value=0.019 Score=44.95 Aligned_cols=130 Identities=15% Similarity=0.250 Sum_probs=67.0
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE---
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV--- 83 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~--- 83 (238)
.+|.+...+. .+..|+...-.|.+.+.-+.. ...+.|++++...........
T Consensus 246 RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~-----------------------SvrlrWf~nG~~V~~~~~rdt~~~ 300 (490)
T PHA03271 246 RPASVDVLAP--PVLSGENYKASCIVRHFYPPG-----------------------SVYVSWRQNGNIATPRKDRDGSFW 300 (490)
T ss_pred cCCCccccCC--ccccCCCceEEEEeeeecCCC-----------------------ceEEEEEeCCccccCccccceeEE
Confidence 4454543333 467899999999998764333 346999998765433221111
Q ss_pred -eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe--cCCCc---ceeeEEEEEcCCcccccccCCceeecCCCcEE
Q psy7941 84 -ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN--TNPMT---KQMAFLEVVIPPDISSEETSGDMMVPEGGSAK 157 (238)
Q Consensus 84 -~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~--~~~~~---~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~ 157 (238)
+.....++..+ +|.+.+...+..-..+|.+. .+... .+.+.-.|..+|.+. +..+.| .
T Consensus 301 w~d~~~g~S~VS------Tltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~VY~~P~IS-------v~FedG---~ 364 (490)
T PHA03271 301 WFESGRGATLVS------TITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIPTVYHHPRIS-------LAFKDG---Y 364 (490)
T ss_pred EecCCCceeEEE------EEEcccccCCCCCCceEEEEEccCCceeeeecccCCccccCCeEE-------EEEeCC---E
Confidence 11222233222 56665544444558999983 11111 111112233333332 223334 4
Q ss_pred EEEEEccccC-CeEEEEeCCC
Q psy7941 158 LVCKAKGYPT-PKITWRREDN 177 (238)
Q Consensus 158 l~C~~~~~p~-~~~~W~~~~~ 177 (238)
..|.+.--|. ..+.|...++
T Consensus 365 AVCtA~CVP~gV~lrWlVgD~ 385 (490)
T PHA03271 365 AICTIECVPSGITVRWLVHDE 385 (490)
T ss_pred EEEeccccCCCcEEEEEecCC
Confidence 4576655443 3899987443
No 369
>PHA03376 BARF1; Provisional
Probab=97.11 E-value=0.012 Score=41.09 Aligned_cols=74 Identities=18% Similarity=0.159 Sum_probs=45.3
Q ss_pred eeecCCCcEEEEEEEcc---ccCCeEEEEeCCC---eeeEeecCC-----CC--CcceEE---EeeceEEEEEeecCCCe
Q psy7941 148 MMVPEGGSAKLVCKAKG---YPTPKITWRREDN---KEIIVRSNP-----PS--SQKVFS---VESEVLSLTKVTRSEMG 211 (238)
Q Consensus 148 ~~~~~g~~~~l~C~~~~---~p~~~~~W~~~~~---~~~~~~~~~-----~~--~~~~~~---~~~~~l~i~~~~~~d~G 211 (238)
+....|+.+.|.|.... .+.-.|.|++.+. ..+...... +. ...... ..+-.|.|.+++.+|.|
T Consensus 21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdG 100 (221)
T PHA03376 21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG 100 (221)
T ss_pred hhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCc
Confidence 45667999999998652 2333799999421 112111110 00 011111 22347899999999999
Q ss_pred EEEEEeeeCC
Q psy7941 212 AYQCIAANGV 221 (238)
Q Consensus 212 ~y~C~~~n~~ 221 (238)
.|+|.+....
T Consensus 101 tY~C~fQkge 110 (221)
T PHA03376 101 NYLCRMKLGE 110 (221)
T ss_pred eEEEEEEcCC
Confidence 9999998654
No 370
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.08 E-value=0.021 Score=45.57 Aligned_cols=81 Identities=20% Similarity=0.305 Sum_probs=55.5
Q ss_pred CCCeEEEEEcccCcccCeEEEEEEecC--CCc--ceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc-ccCC--
Q psy7941 96 DANTWTLNIRSVRREDRGYYMCQVNTN--PMT--KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTP-- 168 (238)
Q Consensus 96 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-- 168 (238)
..+.+.|.|..++..++|.|+=++.+. +.. ...+.+.+...|.+..... .+.+|+...-.|.+.. ||..
T Consensus 285 ~p~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~----PVL~Ge~YkAtC~vA~YYPp~Sv 360 (566)
T PHA03269 285 TTSDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD----PVLLGNPYAAYCKVNKYYPPHSV 360 (566)
T ss_pred CCCccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC----ccccCCCceEEEEeeeecCCCce
Confidence 346778999999999999998665331 222 2334455556776655433 3778999999999977 5544
Q ss_pred eEEEEeCCCeeeE
Q psy7941 169 KITWRREDNKEII 181 (238)
Q Consensus 169 ~~~W~~~~~~~~~ 181 (238)
.+.|+++ +..+.
T Consensus 361 rlrWf~n-g~~V~ 372 (566)
T PHA03269 361 IVKWTSN-FGNIG 372 (566)
T ss_pred EEEEEeC-CcccC
Confidence 7999995 44443
No 371
>PHA02633 hypothetical protein; Provisional
Probab=97.01 E-value=0.0018 Score=36.08 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=25.3
Q ss_pred EEEEcccCcccCeEEEEEEecCCCc-ceeeEEEEE
Q psy7941 101 TLNIRSVRREDRGYYMCQVNTNPMT-KQMAFLEVV 134 (238)
Q Consensus 101 ~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l~v~ 134 (238)
.|.|.++..+|+|.|.|...+.... ..+..+.|.
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~ 53 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC 53 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence 8999999999999999999865442 223344444
No 372
>PHA03269 envelope glycoprotein C; Provisional
Probab=96.87 E-value=0.032 Score=44.63 Aligned_cols=122 Identities=19% Similarity=0.254 Sum_probs=66.8
Q ss_pred eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee--EeecCccEEEEE
Q psy7941 17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH--VITNNARLSVTH 94 (238)
Q Consensus 17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~--~~~~~~~~~~~~ 94 (238)
...+..|+...-.|.+.+.-+.. ...+.|+++++++....... ....++.|+..+
T Consensus 336 p~PVL~Ge~YkAtC~vA~YYPp~-----------------------SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVS 392 (566)
T PHA03269 336 GDPVLLGNPYAAYCKVNKYYPPH-----------------------SVIVKWTSNFGNIGKNFITDAIKENADGLFSSVS 392 (566)
T ss_pred CCccccCCCceEEEEeeeecCCC-----------------------ceEEEEEeCCcccCccccccceeecCCCceEEEE
Confidence 34577999999999998764332 34699999977765322111 112344455444
Q ss_pred cCCCeEEEEEcccCccc--CeEEEEEEe--cCCCc----ceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcccc
Q psy7941 95 NDANTWTLNIRSVRRED--RGYYMCQVN--TNPMT----KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYP 166 (238)
Q Consensus 95 ~~~~~~~L~i~~~~~~d--~G~Y~C~~~--~~~~~----~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p 166 (238)
+|.+......| --..+|.+. .+... +..+.-.|..+|.+.+ ....| ...|.+.--|
T Consensus 393 ------TLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtISm-------~FedG---~AVCtA~CVP 456 (566)
T PHA03269 393 ------ALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVSI-------EIIDG---HIVCLAKCVP 456 (566)
T ss_pred ------EEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCeEEE-------EEeCC---EEEEeccccc
Confidence 66664332233 457799883 11111 1122223444444332 23333 4567776665
Q ss_pred C--CeEEEEeCCC
Q psy7941 167 T--PKITWRREDN 177 (238)
Q Consensus 167 ~--~~~~W~~~~~ 177 (238)
. ..+.|..++.
T Consensus 457 ~~~V~l~WlVgD~ 469 (566)
T PHA03269 457 RGVVHFNWWINDI 469 (566)
T ss_pred CCCceEEEEecCC
Confidence 4 3789987443
No 373
>PHA02982 hypothetical protein; Provisional
Probab=96.81 E-value=0.1 Score=37.10 Aligned_cols=126 Identities=10% Similarity=0.173 Sum_probs=69.3
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-------eeEe-ec
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-------EHVI-TN 86 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-------~~~~-~~ 86 (238)
..++.+..++++.|.|.+.+... -.+..|+++++....... ...+ .+
T Consensus 31 ~~dv~a~vd~~V~L~C~~~~~~~-------------------------i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~ 85 (251)
T PHA02982 31 TADVNATVDQEVKLQCLFKDADE-------------------------ISRAMWKGDAGFMLAQEANGGTGINAFNYVPG 85 (251)
T ss_pred hhhhhccCCCcEEEEecCCCcch-------------------------hhhheeeCCCCeEEEeeecCcceeccccccCC
Confidence 34566778999999999754322 224789986644322111 1000 00
Q ss_pred --CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCccee--eEEEEEcCCcccccccCCceeecCC-CcEEEEEE
Q psy7941 87 --NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM--AFLEVVIPPDISSEETSGDMMVPEG-GSAKLVCK 161 (238)
Q Consensus 87 --~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~--~~l~v~~~~~~~~~~~~~~~~~~~g-~~~~l~C~ 161 (238)
...+. .+......+|+|.++..+..|-|+|++..+.....+ .-+.|+...... ...++ ....+.|-
T Consensus 86 ~~kd~y~-~sv~g~~STLTIkk~~i~N~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~--------~W~e~nNeT~V~Cy 156 (251)
T PHA02982 86 PYKDKYA-LSVSGNSSTFTMKKPDPQNLGCFTCEAKDAEGKEETCEKCLEIQKEDILY--------VVEEHNNETIITCF 156 (251)
T ss_pred ccceeEE-EEEeccceeEEeccCCcccCCceEEEEecCCCchheeheeeeEecceEEE--------EEEecCCeEEEEEE
Confidence 11222 222334559999999999999999999765433332 224443211111 11222 34567898
Q ss_pred EccccCCeEEEEe
Q psy7941 162 AKGYPTPKITWRR 174 (238)
Q Consensus 162 ~~~~p~~~~~W~~ 174 (238)
+-.+..+-..|..
T Consensus 157 VgS~~~dvp~W~V 169 (251)
T PHA02982 157 VGSKHGDVPRFIV 169 (251)
T ss_pred EEeccCCCccEEE
Confidence 7544333338887
No 374
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.73 E-value=0.0025 Score=41.83 Aligned_cols=81 Identities=14% Similarity=0.258 Sum_probs=41.7
Q ss_pred ecCCCcEEEEEEEccc-----cCCeEEEEeCCCeeeEeecCCCCCc------c--e--EEEeeceEEEEEeecCCCeEEE
Q psy7941 150 VPEGGSAKLVCKAKGY-----PTPKITWRREDNKEIIVRSNPPSSQ------K--V--FSVESEVLSLTKVTRSEMGAYQ 214 (238)
Q Consensus 150 ~~~g~~~~l~C~~~~~-----p~~~~~W~~~~~~~~~~~~~~~~~~------~--~--~~~~~~~l~i~~~~~~d~G~y~ 214 (238)
..-++++.|+|.+... +.-.+.|.. ++..+...+...... . . ....+.+|.+...+.- .|+|+
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~-~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT 101 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKF-KNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT 101 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEE-TTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEE-CCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence 3457889999998652 222699998 444443333211100 0 0 0011235777664444 89999
Q ss_pred EEeeeCCCCCccceEEEEE
Q psy7941 215 CIAANGVPPTVSKRLMLHV 233 (238)
Q Consensus 215 C~~~n~~g~~~~~~~~l~V 233 (238)
|.+.....+. ...+.|..
T Consensus 102 CeVt~~~~eg-e~~i~Lk~ 119 (130)
T PF08204_consen 102 CEVTELSREG-ETTIELKY 119 (130)
T ss_dssp EEEEETTEEE-EEEEEEEE
T ss_pred EEEEecCCCc-eEEEEEEE
Confidence 9999877633 66666655
No 375
>KOG4597|consensus
Probab=96.71 E-value=0.0045 Score=49.01 Aligned_cols=87 Identities=13% Similarity=0.226 Sum_probs=61.0
Q ss_pred CceeecCCCcEEEEEEEccccCCeEEEEeC--CCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941 146 GDMMVPEGGSAKLVCKAKGYPTPKITWRRE--DNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP 223 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~ 223 (238)
....+..+++..+.|.+.|.|.+.|+|.+- +...+.-. ...........+...|.|-+.+..|+|.|+|.+.+..|.
T Consensus 204 a~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~-~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~ 282 (560)
T KOG4597|consen 204 AEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMR-PNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGF 282 (560)
T ss_pred chhhcccchhhcccccccCCcCceeeeehhhccccceeec-CccccCCcceeeeeeEEEcchhhcCCCceeeccccccce
Confidence 345677889999999999999999999752 22222111 111223333445567999999999999999999999994
Q ss_pred CccceEEEEEE
Q psy7941 224 TVSKRLMLHVH 234 (238)
Q Consensus 224 ~~~~~~~l~V~ 234 (238)
..+.+.+.+.
T Consensus 283 -~~rdv~c~s~ 292 (560)
T KOG4597|consen 283 -LRRDVPCSSV 292 (560)
T ss_pred -eeccceeeee
Confidence 3666665554
No 376
>PHA03273 envelope glycoprotein C; Provisional
Probab=96.67 E-value=0.047 Score=43.42 Aligned_cols=78 Identities=21% Similarity=0.375 Sum_probs=53.8
Q ss_pred eEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEE--EcCCcccccccCCceeecCCCcEEEEEEEcc-ccCC--eEEE
Q psy7941 99 TWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEV--VIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTP--KITW 172 (238)
Q Consensus 99 ~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v--~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--~~~W 172 (238)
.+.|.|..++..++|.|+=+..+. +.......++| ..+|.+.+... .+.+|+...-.|.+.. +|.. .+.|
T Consensus 197 ~~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~----PvL~Ge~y~A~C~aa~YYPp~Sv~~rW 272 (486)
T PHA03273 197 KFPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH----PSLKGENYRAVCVVASYFPHSSVKLRW 272 (486)
T ss_pred ccceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC----ccccCCCceEEEEeeeecCCCceEEEE
Confidence 367999999999999998655332 22233344444 56777665433 3778999999999977 5544 7999
Q ss_pred EeCCCeeeE
Q psy7941 173 RREDNKEII 181 (238)
Q Consensus 173 ~~~~~~~~~ 181 (238)
++ ++.++.
T Consensus 273 f~-dg~~V~ 280 (486)
T PHA03273 273 YK-NAKEVD 280 (486)
T ss_pred Ee-CCeecc
Confidence 99 454444
No 377
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=96.62 E-value=0.0033 Score=45.98 Aligned_cols=50 Identities=20% Similarity=0.301 Sum_probs=39.1
Q ss_pred cCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941 166 PTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221 (238)
Q Consensus 166 p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~ 221 (238)
..|.+.|..++++.+... ........+.|.+.++...++|.|+|..+...
T Consensus 11 iDP~y~W~GP~g~~l~gn------~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGN------SYVNITETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCC------CeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence 467899999777766432 33445667789999999999999999998765
No 378
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.48 E-value=0.021 Score=36.69 Aligned_cols=72 Identities=14% Similarity=0.213 Sum_probs=43.3
Q ss_pred eeecCCCcEEEEEEEcccc--C-CeEEEEeCCCee--eEeecC------CCCCcceE-E----EeeceEEEEEeecCCCe
Q psy7941 148 MMVPEGGSAKLVCKAKGYP--T-PKITWRREDNKE--IIVRSN------PPSSQKVF-S----VESEVLSLTKVTRSEMG 211 (238)
Q Consensus 148 ~~~~~g~~~~l~C~~~~~p--~-~~~~W~~~~~~~--~~~~~~------~~~~~~~~-~----~~~~~l~i~~~~~~d~G 211 (238)
..+..|..++|.|.+.|.- . -.+.|.+..... ...... ........ . ...-.|.+.+++.+|.+
T Consensus 8 ~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa 87 (115)
T cd05721 8 VLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTD 87 (115)
T ss_pred eEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCe
Confidence 4567788899999997743 3 368998843221 111110 00111111 1 11127889999999999
Q ss_pred EEEEEeee
Q psy7941 212 AYQCIAAN 219 (238)
Q Consensus 212 ~y~C~~~n 219 (238)
.|.|..+.
T Consensus 88 ~Y~Ca~e~ 95 (115)
T cd05721 88 IYFCKIEL 95 (115)
T ss_pred EEEEEeee
Confidence 99997653
No 379
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.42 E-value=0.012 Score=33.49 Aligned_cols=20 Identities=20% Similarity=0.409 Sum_probs=13.9
Q ss_pred EEEEcccCcccCeEEEEEEec
Q psy7941 101 TLNIRSVRREDRGYYMCQVNT 121 (238)
Q Consensus 101 ~L~i~~~~~~d~G~Y~C~~~~ 121 (238)
.+.+.+-. ++.|.|.|.+.+
T Consensus 36 ~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 36 KYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred eEEeeccC-CCCceEEEEeCC
Confidence 34444444 889999999853
No 380
>PHA03270 envelope glycoprotein C; Provisional
Probab=96.41 E-value=0.21 Score=39.52 Aligned_cols=120 Identities=17% Similarity=0.256 Sum_probs=62.9
Q ss_pred eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeee--eeeeeEeecCccEEEEEc
Q psy7941 18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVL--AIHEHVITNNARLSVTHN 95 (238)
Q Consensus 18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 95 (238)
..+..|+...-.|.+.+.-+.. ...+.||+++..... ..........+.|+..+
T Consensus 229 ~PvL~Ge~Y~AtC~va~YYPp~-----------------------Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vS- 284 (466)
T PHA03270 229 HAVLEGEPFGATCVAANYYPGD-----------------------RAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATS- 284 (466)
T ss_pred CccccCCCceEEEEeeeecCCC-----------------------ceEEEEEeCCccccCcceeeeeeEecCCCeeEEE-
Confidence 3477899999999998764332 346999998876532 11122222223333332
Q ss_pred CCCeEEEEEcccCc-ccCeEEEEEEe--cCCCc----ceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCC
Q psy7941 96 DANTWTLNIRSVRR-EDRGYYMCQVN--TNPMT----KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP 168 (238)
Q Consensus 96 ~~~~~~L~i~~~~~-~d~G~Y~C~~~--~~~~~----~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~ 168 (238)
+|++..... ...-+.+|.+. .+... +..+.-.|+.+|.+.+ ....| ...|.+.--|.-
T Consensus 285 -----tvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Isv-------~F~dG---~AVCtA~CVPeg 349 (466)
T PHA03270 285 -----TLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEM-------EFGGD---EAVCTAACVPEG 349 (466)
T ss_pred -----EEeccccccCCCCCCceEEEEEccCCccceeecccccCccccCCeEEE-------EEeCC---EEEEeccccCCC
Confidence 555544332 22348899883 11111 1122223344444332 23333 445776554433
Q ss_pred -eEEEEeCC
Q psy7941 169 -KITWRRED 176 (238)
Q Consensus 169 -~~~W~~~~ 176 (238)
.+.|...+
T Consensus 350 V~l~W~V~D 358 (466)
T PHA03270 350 VTLAWLLGA 358 (466)
T ss_pred CEEEEEecC
Confidence 89998744
No 381
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.36 E-value=0.027 Score=35.10 Aligned_cols=17 Identities=18% Similarity=0.489 Sum_probs=14.0
Q ss_pred EEecCCEEEEeEEecCC
Q psy7941 20 IAQGRDAIFTCVVNNLG 36 (238)
Q Consensus 20 v~~g~~~~l~C~~~~~~ 36 (238)
+.+|..+++.|.+.+..
T Consensus 12 l~~G~~vtv~C~v~~v~ 28 (99)
T cd07689 12 LEEGKPVTVKCEVPDVY 28 (99)
T ss_pred ccCCceEEEEEEecCcc
Confidence 36899999999997643
No 382
>PHA02982 hypothetical protein; Provisional
Probab=96.31 E-value=0.018 Score=40.70 Aligned_cols=77 Identities=17% Similarity=0.292 Sum_probs=51.0
Q ss_pred eeecCCCcEEEEEEEc-cccCCeEEEEeCCCeeeEeecC-----------C----CCCcceEEEeeceEEEEEeecCCCe
Q psy7941 148 MMVPEGGSAKLVCKAK-GYPTPKITWRREDNKEIIVRSN-----------P----PSSQKVFSVESEVLSLTKVTRSEMG 211 (238)
Q Consensus 148 ~~~~~g~~~~l~C~~~-~~p~~~~~W~~~~~~~~~~~~~-----------~----~~~~~~~~~~~~~l~i~~~~~~d~G 211 (238)
+....++.+.|.|... +.......|..+++..+..... + ...........++|+|..+..+..|
T Consensus 34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G 113 (251)
T PHA02982 34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG 113 (251)
T ss_pred hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence 3455688999999963 3556688999866654441110 0 0011122344568999999999999
Q ss_pred EEEEEeeeCCCCC
Q psy7941 212 AYQCIAANGVPPT 224 (238)
Q Consensus 212 ~y~C~~~n~~g~~ 224 (238)
-|+|.+....+..
T Consensus 114 CYtc~~ks~~~k~ 126 (251)
T PHA02982 114 CFTCEAKDAEGKE 126 (251)
T ss_pred ceEEEEecCCCch
Confidence 9999999866533
No 383
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.94 E-value=0.013 Score=42.94 Aligned_cols=47 Identities=17% Similarity=0.390 Sum_probs=36.2
Q ss_pred CCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941 62 SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN 120 (238)
Q Consensus 62 ~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 120 (238)
-.|.++|..+++..+. .+.++.+...+ .|.+.+...+++|.|+|...
T Consensus 11 iDP~y~W~GP~g~~l~--------gn~~~nIT~TG----~L~~~~F~esmSG~YTCtLs 57 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLS--------GNSYVNITETG----KLMFKNFQESMSGSYTCTLS 57 (271)
T ss_pred CCCceEEECCCCcccC--------CCCeEEEccCc----eEEeeccccccCCceEEEEE
Confidence 3677999998877543 34455555544 89999999999999999984
No 384
>PHA03042 CD47-like protein; Provisional
Probab=95.59 E-value=0.17 Score=37.55 Aligned_cols=70 Identities=21% Similarity=0.408 Sum_probs=42.3
Q ss_pred cCCCcEEEEEEEccc-----cCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCc
Q psy7941 151 PEGGSAKLVCKAKGY-----PTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTV 225 (238)
Q Consensus 151 ~~g~~~~l~C~~~~~-----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~ 225 (238)
.-++++.++|.+... ..-.+.|.. ++......+.+ ...+|.+. ....-.|+|+|.|.+...+.
T Consensus 29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf-~~~~If~~n~t---------n~aSL~~~-f~~~l~GNYTCEv~~l~n~g- 96 (286)
T PHA03042 29 TCNKTIVIVCNLNLLIYYNISNIHINWKF-NNKVIFKKNNT---------NTSSLKFN-FSKNLSGNYTCEAINKFNKI- 96 (286)
T ss_pred ecCceEEEEeecCChhhcCccceEEEEEe-CCeeEEEecCC---------cceEEEEe-ccccCCCceeEEEeecccCc-
Confidence 347889999998652 233699999 44444332221 11234443 33445899999999876534
Q ss_pred cceEEEE
Q psy7941 226 SKRLMLH 232 (238)
Q Consensus 226 ~~~~~l~ 232 (238)
.+.+.|.
T Consensus 97 k~~IeLk 103 (286)
T PHA03042 97 KNTIELQ 103 (286)
T ss_pred cEEEEEE
Confidence 4555443
No 385
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=95.08 E-value=0.081 Score=33.28 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=32.1
Q ss_pred EEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941 194 SVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 194 ~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
...+-.|.|..++..|+|.|...+++..|....+.++|.|.
T Consensus 67 ~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 67 TSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp ETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred eccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 34455899999999999999999999999766777777764
No 386
>PHA03189 UL14 tegument protein; Provisional
Probab=95.02 E-value=0.48 Score=35.77 Aligned_cols=25 Identities=8% Similarity=0.127 Sum_probs=19.2
Q ss_pred cCceeEEEecCCEEEEeEEecCCCc
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGH 38 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~ 38 (238)
++..+.+..||.+++.|.+-...-.
T Consensus 58 spAP~l~pyGdrvtVpC~fp~H~WP 82 (348)
T PHA03189 58 SPAPLLVPYGDRVTVPCTFPTHDWP 82 (348)
T ss_pred CCCccccCCCceeeeeeeecCCCCc
Confidence 3566778899999999998655433
No 387
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=94.96 E-value=1.4 Score=34.78 Aligned_cols=135 Identities=15% Similarity=0.298 Sum_probs=74.0
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee---eeeeee-----eEeec
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA---VLAIHE-----HVITN 86 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~---~~~~~~-----~~~~~ 86 (238)
-+.+.+..|..+.+.|.++-.+.+. -....|+..+-+. ...... .-+..
T Consensus 271 ~~~~~~~~g~~v~~~c~~s~~~~e~-----------------------i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~ 327 (500)
T PHA02914 271 FDEVMLEVGKRVDIECFFSMCGNEN-----------------------ISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAE 327 (500)
T ss_pred cceeEeccCcEEEEEEEEeecCCcc-----------------------cccceEEecCCcccceeEEEEecceeeccccc
Confidence 3466777899999999987543333 2357898765322 111111 11222
Q ss_pred CccEEEEEc-----CCCeEEEEEcccCcccCeEEEEEEecCCCcce-eeEEEEEcCCcccccccCCceeecCCCcEEEEE
Q psy7941 87 NARLSVTHN-----DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ-MAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160 (238)
Q Consensus 87 ~~~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C 160 (238)
+..|.+... +-...+|+|.++..+.+|-|+|++..+..... ..-+.|.....+. ............|
T Consensus 328 ~~~~~i~~~~~~s~dlk~STLTIkka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V~f~-------W~~e~~n~T~V~C 400 (500)
T PHA02914 328 DDDFMISAHANYSDDLKNSTLTIKKAHINNAGCYEAQAFMGKFKEECRHCFKVADHVFFK-------WNTEGDNETKVAC 400 (500)
T ss_pred CCceEEEEecccccchhhceEEeeeEEEEcCCceEEEEecCcchhhhhhheEeccEEEEE-------EEeccCceEEEEE
Confidence 344544432 22456999999999999999999965533221 1112222111110 0111123456678
Q ss_pred EEccc--cCCeEEEEeCCCeee
Q psy7941 161 KAKGY--PTPKITWRREDNKEI 180 (238)
Q Consensus 161 ~~~~~--p~~~~~W~~~~~~~~ 180 (238)
-+-.+ .++.+.|.. +|...
T Consensus 401 yv~sy~~kp~si~wkv-nGV~~ 421 (500)
T PHA02914 401 YAAQYDMQPFSILWKS-NGVSF 421 (500)
T ss_pred EEEecccCCceeEEEE-ccEEe
Confidence 87443 455899998 55433
No 388
>KOG1480|consensus
Probab=94.72 E-value=0.013 Score=49.33 Aligned_cols=75 Identities=19% Similarity=0.307 Sum_probs=50.3
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCcc
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNAR 89 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~ 89 (238)
.|...+.-..|..+..+.+.|... .+.|..-+.|++++..... . .+...
T Consensus 131 ~f~~~p~~q~V~~~s~~~l~cr~p-------------------------e~~paae~~w~k~e~~~~p-d-~n~~~---- 179 (909)
T KOG1480|consen 131 HFEQSPVGQEVQEETTLQLPCRPP-------------------------EGDPKAEVEWLKNEVVIDP-D-ANVIR---- 179 (909)
T ss_pred hhccChhhheecccccccccccCc-------------------------ccchhhhhhccccCCCCCc-c-ccchh----
Confidence 345566667788888888888863 3455667899997654322 1 11110
Q ss_pred EEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 90 LSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 90 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
. ....|++..+...|.|+|+|++.+-
T Consensus 180 ---~----~d~~li~~~arlsd~~nytc~a~ni 205 (909)
T KOG1480|consen 180 ---A----SDHNLIISQARLSDSGNYTCEATNI 205 (909)
T ss_pred ---h----hcCCccccchhhhhcccceeeeehh
Confidence 0 1117889999999999999999764
No 389
>PHA03273 envelope glycoprotein C; Provisional
Probab=94.65 E-value=1.9 Score=34.78 Aligned_cols=120 Identities=21% Similarity=0.345 Sum_probs=65.7
Q ss_pred eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeee-eeee--eEeecCccEEEEE
Q psy7941 18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVL-AIHE--HVITNNARLSVTH 94 (238)
Q Consensus 18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~-~~~~--~~~~~~~~~~~~~ 94 (238)
..+..|+...-.|.+.+.-+.. ...+.|++++..... .... .....++.++..+
T Consensus 245 ~PvL~Ge~y~A~C~aa~YYPp~-----------------------Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vS 301 (486)
T PHA03273 245 HPSLKGENYRAVCVVASYFPHS-----------------------SVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRIS 301 (486)
T ss_pred CccccCCCceEEEEeeeecCCC-----------------------ceEEEEEeCCeeccccccceeeEEEecCCceEEEE
Confidence 3577899999999998764332 346999999876551 1111 1112223333333
Q ss_pred cCCCeEEEEEcccCc-ccCeEEEEEEe--cCCCcc----eeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccC
Q psy7941 95 NDANTWTLNIRSVRR-EDRGYYMCQVN--TNPMTK----QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPT 167 (238)
Q Consensus 95 ~~~~~~~L~i~~~~~-~d~G~Y~C~~~--~~~~~~----~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~ 167 (238)
+|.+..... +..-..+|.+. .+.... ..+.-.|..+|.+.+ ....| ...|.+.--|.
T Consensus 302 ------tlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is~-------~F~~G---~AVCtA~CVP~ 365 (486)
T PHA03273 302 ------TLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVSV-------TVEDG---DAVCTAKCVPS 365 (486)
T ss_pred ------EEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEEE-------EEeCC---EEEEecccccC
Confidence 676665433 44558999983 121111 112223334443332 23333 55687776665
Q ss_pred --CeEEEEeCC
Q psy7941 168 --PKITWRRED 176 (238)
Q Consensus 168 --~~~~W~~~~ 176 (238)
..+.|..++
T Consensus 366 egV~l~W~v~D 376 (486)
T PHA03273 366 TGVFVSWSVND 376 (486)
T ss_pred CCeeEEEEccC
Confidence 489998755
No 390
>PHA03042 CD47-like protein; Provisional
Probab=94.59 E-value=0.26 Score=36.56 Aligned_cols=64 Identities=17% Similarity=0.263 Sum_probs=38.9
Q ss_pred EEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCe
Q psy7941 20 IAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANT 99 (238)
Q Consensus 20 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (238)
-.-++++.++|.+++..-.. .....+.|..++......... +.
T Consensus 28 T~CN~TV~IpC~v~n~~~~n---------------------i~~~~V~Wkf~~~~If~~n~t----------------n~ 70 (286)
T PHA03042 28 TTCNKTIVIVCNLNLLIYYN---------------------ISNIHINWKFNNKVIFKKNNT----------------NT 70 (286)
T ss_pred EecCceEEEEeecCChhhcC---------------------ccceEEEEEeCCeeEEEecCC----------------cc
Confidence 45789999999997742211 124469999977654322111 11
Q ss_pred EEEEEcccCcccCeEEEEEEec
Q psy7941 100 WTLNIRSVRREDRGYYMCQVNT 121 (238)
Q Consensus 100 ~~L~i~~~~~~d~G~Y~C~~~~ 121 (238)
.+|.+.. ...-.|+|+|++.+
T Consensus 71 aSL~~~f-~~~l~GNYTCEv~~ 91 (286)
T PHA03042 71 SSLKFNF-SKNLSGNYTCEAIN 91 (286)
T ss_pred eEEEEec-cccCCCceeEEEee
Confidence 2555533 34458999999954
No 391
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=94.04 E-value=0.92 Score=28.68 Aligned_cols=43 Identities=21% Similarity=0.324 Sum_probs=28.1
Q ss_pred ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEE
Q psy7941 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV 133 (238)
Q Consensus 88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v 133 (238)
.|+.... .+.+|.|+.++..|+|.|.-++.+..+.-......|
T Consensus 62 ~r~~F~~---enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqV 104 (108)
T PF11465_consen 62 NRFNFTS---ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQV 104 (108)
T ss_dssp HHEEEET---TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEE
T ss_pred ceEeeec---cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEE
Confidence 3555543 344999999999999999999977655444444443
No 392
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=93.77 E-value=1.6 Score=34.50 Aligned_cols=41 Identities=10% Similarity=0.199 Sum_probs=27.8
Q ss_pred CeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCc
Q psy7941 98 NTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPD 138 (238)
Q Consensus 98 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~ 138 (238)
...++.+.|++.+|.|.|.|...-.......-.+.|.+.|.
T Consensus 79 keYsf~~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~vrVmPK 119 (500)
T PHA02914 79 KEYSFIEENIGEHEDGDFKCIFYLGDNESHKHEILVRKAPK 119 (500)
T ss_pred ceeEEEecCcccccCCcEEEEEEeCCceeEEEEEEEEEccc
Confidence 45688899999999999999996544433333344444443
No 393
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=93.54 E-value=0.95 Score=27.19 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=16.0
Q ss_pred eEEEEEeecCCCeEEEEEee
Q psy7941 199 VLSLTKVTRSEMGAYQCIAA 218 (238)
Q Consensus 199 ~l~i~~~~~~d~G~y~C~~~ 218 (238)
.........+|+|.+.|.|.
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEE
T ss_pred EEEEecCCCCCCEEEEEEEc
Confidence 45556677899999999995
No 394
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=92.87 E-value=1.4 Score=27.26 Aligned_cols=76 Identities=16% Similarity=0.230 Sum_probs=40.1
Q ss_pred cEEEEEEE-ccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941 155 SAKLVCKA-KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233 (238)
Q Consensus 155 ~~~l~C~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V 233 (238)
.+.-.|.+ .|.|++.|+|.-+-+........... ........ .+.+-.....|.-..+|.+.+... ....++.|.|
T Consensus 22 v~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~-~GT~TV~S-~y~lVPs~~~~gk~lTCvV~h~~~-~~~~~~~L~v 98 (98)
T cd05890 22 MLVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQ-NGTVTVIS-RYRLVPSREAHKQKLTCIVNYRND-RFTDSVTLNV 98 (98)
T ss_pred EEEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCC-CCCEEEEE-EEEEeECHHHcCCEeEEEEEeccc-cccccEEecC
Confidence 35668984 88999999998632222221111111 11111111 233333334444599999998754 4455665543
No 395
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=91.45 E-value=0.81 Score=35.52 Aligned_cols=21 Identities=24% Similarity=0.714 Sum_probs=18.0
Q ss_pred cEEEEEEEcc-ccCC-eEEEEeC
Q psy7941 155 SAKLVCKAKG-YPTP-KITWRRE 175 (238)
Q Consensus 155 ~~~l~C~~~~-~p~~-~~~W~~~ 175 (238)
.+.|.|.+.| ||.. .+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 4799999999 7766 8999995
No 396
>KOG4597|consensus
Probab=90.44 E-value=0.67 Score=37.37 Aligned_cols=90 Identities=14% Similarity=0.150 Sum_probs=54.0
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce---eeeeeeeeEeec
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK---AVLAIHEHVITN 86 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~---~~~~~~~~~~~~ 86 (238)
.+...+....+..+++..++|.+. +.|.+.|+|-+.-.. +... ..+.+
T Consensus 198 ~l~~cpa~w~vg~wetcS~tCg~~--------------------------G~q~r~V~c~qv~anr~~vv~~-~nq~~-- 248 (560)
T KOG4597|consen 198 ALVDCPAEWFVGDWETCSSTCGVQ--------------------------GRQYRVVTCEQVFANRENVVMR-PNQTV-- 248 (560)
T ss_pred ccccCcchhhcccchhhccccccc--------------------------CCcCceeeeehhhccccceeec-Ccccc--
Confidence 344445566677888888888874 344667999875322 1111 11111
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEE
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEV 133 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 133 (238)
++..+ .+...|.|.+....|+|.|+|.+.+. +.....+.+.+
T Consensus 249 -e~p~v----tstcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c~s 291 (560)
T KOG4597|consen 249 -ENPVV----TSTCQLVICNEWQADAGWYTCSARCGAGFLRRDVPCSS 291 (560)
T ss_pred -CCcce----eeeeeEEEcchhhcCCCceeeccccccceeeccceeee
Confidence 11111 13458999999999999999999765 33333444433
No 397
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=90.16 E-value=1.7 Score=33.75 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=12.4
Q ss_pred cCcccCeEEEEEEecCC
Q psy7941 107 VRREDRGYYMCQVNTNP 123 (238)
Q Consensus 107 ~~~~d~G~Y~C~~~~~~ 123 (238)
+..++...|+|.+.+.+
T Consensus 288 v~~~~~~~Y~C~V~Hsg 304 (338)
T PHA02865 288 VPTDMSNQIVCVVFHST 304 (338)
T ss_pred eCCCCCCCcEEEEEeCC
Confidence 44567778999997655
No 398
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=89.81 E-value=2.3 Score=26.18 Aligned_cols=72 Identities=11% Similarity=0.317 Sum_probs=41.4
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEE
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTH 94 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (238)
++...+..|.+++..|.+.+.-. .......+.|..++.. .. ..+++...
T Consensus 10 p~~pvv~lGS~vtasC~l~~~c~---------------------~~~~a~~I~Wkln~~~-iP---------~~qy~~in 58 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQNCS---------------------HSVNASQIVWKLNGEK-IP---------GSQYRVIN 58 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-CCCH---------------------CT-STTCEEEECSSCE-ST---------CGCEEEES
T ss_pred cCCCEEeCCCCEEEEEEEECCCC---------------------CCcccceEEEEECCEE-CC---------hhHcceeC
Confidence 45556789999999999974211 0134567999997663 32 22222221
Q ss_pred cCCCeEEEEEcccCcccCeEEEEEE
Q psy7941 95 NDANTWTLNIRSVRREDRGYYMCQV 119 (238)
Q Consensus 95 ~~~~~~~L~i~~~~~~d~G~Y~C~~ 119 (238)
....++++.+......-.|-|..
T Consensus 59 --~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 59 --DTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp --TTEEEEEESS--SSEEEEEEEEE
T ss_pred --CeEEEEEEccCCCCCceEEEEEE
Confidence 12237778887777777888875
No 399
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=88.23 E-value=8 Score=28.04 Aligned_cols=97 Identities=19% Similarity=0.316 Sum_probs=47.9
Q ss_pred eEEEEeCCceeeeeeeeeE--eecCccEEEEEcCCCeEEEEE-cccCcccCeEEEEEEec--CCCccee----eEEEEEc
Q psy7941 65 KVAWIKADTKAVLAIHEHV--ITNNARLSVTHNDANTWTLNI-RSVRREDRGYYMCQVNT--NPMTKQM----AFLEVVI 135 (238)
Q Consensus 65 ~~~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~i-~~~~~~d~G~Y~C~~~~--~~~~~~~----~~l~v~~ 135 (238)
.+.|+.++..+........ ...++.++..+ +|.+ .+...+..-..+|.+.= +...... +.-.|..
T Consensus 8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vS------tl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~ 81 (211)
T PF02124_consen 8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVS------TLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYP 81 (211)
T ss_pred EEEEEECCEeCCccceeeEEEEecCCcEEEEE------EEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceec
Confidence 5899998875542221111 11123344333 7777 33444556689999831 1111111 1112333
Q ss_pred CCcccccccCCceeecCCCcEEEEEEEccccC--CeEEEEeCCC
Q psy7941 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPT--PKITWRREDN 177 (238)
Q Consensus 136 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~~~ 177 (238)
+|.+.. ...+| ...|.+.--|. -.+.|..++.
T Consensus 82 ~P~vsv-------~F~~g---~AVC~A~CVP~~~v~l~W~v~d~ 115 (211)
T PF02124_consen 82 KPRVSV-------RFEDG---YAVCTARCVPRGNVTLRWSVGDD 115 (211)
T ss_pred CCEEEE-------EecCC---EEEEEcceeeCCCeEEEEEECCc
Confidence 333322 22223 56787766553 4899998443
No 400
>PHA03052 Hypothetical protein; Provisional
Probab=86.33 E-value=3.6 Score=23.59 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=28.6
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA 75 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~ 75 (238)
|+.+.+..|..+++.|.+.--.+ .+.+.+.|.-++...
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g-----------------------~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPP-----------------------TTDADVFWISNGMYY 41 (69)
T ss_pred CccEEEEccCCceEeEEEEecCC-----------------------CcceEEEEEeCCcEE
Confidence 47788999999999999964222 235678999987654
No 401
>KOG0613|consensus
Probab=82.81 E-value=4.6 Score=36.98 Aligned_cols=78 Identities=10% Similarity=-0.037 Sum_probs=49.8
Q ss_pred CceeecCCCcEEEEEEEccccCCe-EEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 146 GDMMVPEGGSAKLVCKAKGYPTPK-ITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
..+....+..+.+.|...+.+.|. +.|+.++........- ............+.+..+...+.+.|.|.|.|..|..
T Consensus 342 ~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~ 419 (1205)
T KOG0613|consen 342 LSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGA--LPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTE 419 (1205)
T ss_pred ceeccccCcceeecccccCCcCCchheeecccccccccccc--cccccccccCcchhhhhcCcccccccccceeccCCcc
Confidence 334566778899999999988774 9999843322211100 0011111222346667788888999999999998854
Q ss_pred c
Q psy7941 225 V 225 (238)
Q Consensus 225 ~ 225 (238)
.
T Consensus 420 ~ 420 (1205)
T KOG0613|consen 420 Q 420 (1205)
T ss_pred c
Confidence 3
No 402
>PHA03052 Hypothetical protein; Provisional
Probab=82.27 E-value=4.4 Score=23.26 Aligned_cols=34 Identities=12% Similarity=0.300 Sum_probs=24.2
Q ss_pred CceeecCCCcEEEEEEE-ccc--cCCeEEEEeCCCeee
Q psy7941 146 GDMMVPEGGSAKLVCKA-KGY--PTPKITWRREDNKEI 180 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~-~~~--p~~~~~W~~~~~~~~ 180 (238)
..+.+..|+.+++.|.+ .|. ..+.+.|.. ++...
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~-N~~~~ 41 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWIS-NGMYY 41 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEe-CCcEE
Confidence 44678889999999998 343 355789987 44433
No 403
>PHA03240 envelope glycoprotein M; Provisional
Probab=80.80 E-value=2.7 Score=30.13 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=17.1
Q ss_pred CeEEEEEcccCcccCeEEEEEE
Q psy7941 98 NTWTLNIRSVRREDRGYYMCQV 119 (238)
Q Consensus 98 ~~~~L~i~~~~~~d~G~Y~C~~ 119 (238)
.+.+|.|.++..+|.|+| |+-
T Consensus 103 ~NstL~i~~vn~sd~~nY-cr~ 123 (258)
T PHA03240 103 HNSTLIIAHLNLSDAGEY-CRK 123 (258)
T ss_pred ccceEEEEEEeecCcchh-hhc
Confidence 345999999999999999 443
No 404
>PHA03189 UL14 tegument protein; Provisional
Probab=78.24 E-value=29 Score=26.75 Aligned_cols=19 Identities=32% Similarity=0.683 Sum_probs=16.0
Q ss_pred EeecCCCeEEEEEeeeCCC
Q psy7941 204 KVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 204 ~~~~~d~G~y~C~~~n~~g 222 (238)
++..+.+|.|.|+..|...
T Consensus 139 ~v~t~taG~Y~CvLrN~tH 157 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETH 157 (348)
T ss_pred EEEecccceEEEEeccccc
Confidence 5677889999999999763
No 405
>PHA02935 Hypothetical protein; Provisional
Probab=76.86 E-value=10 Score=27.02 Aligned_cols=94 Identities=19% Similarity=0.245 Sum_probs=47.4
Q ss_pred eEEEEeCCceeeeeeeeeEee----cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCccc
Q psy7941 65 KVAWIKADTKAVLAIHEHVIT----NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDIS 140 (238)
Q Consensus 65 ~~~W~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~ 140 (238)
.-.||.++............. --.|..+... -|.|..+..+|+|.|.-...-..+...+..+.+.+...+.
T Consensus 68 ytswyyndkvialatedrtsgyissfikrvnislt-----clnisslryedsgsykgvshlkdgvivtttmnisvkanii 142 (349)
T PHA02935 68 YTSWYYNDKVIALATEDRTSGYISSFIKRVNISLT-----CLNISSLRYEDSGSYKGVSHLKDGVIVTTTMNISVKANII 142 (349)
T ss_pred cceeeecCEEEEEeeccccccHHHHHHhhheeeEE-----EeeccceeeccCCcccCchhhcCceEEEEEEEEEEEeeeE
Confidence 357999776544333221111 0123333222 5777888899999998765433344444455555444433
Q ss_pred ccccCCceeecCCCcEEEEEEEc
Q psy7941 141 SEETSGDMMVPEGGSAKLVCKAK 163 (238)
Q Consensus 141 ~~~~~~~~~~~~g~~~~l~C~~~ 163 (238)
-...........-..+.+.|...
T Consensus 143 dltgrvryltrnycevkirceik 165 (349)
T PHA02935 143 DLTGRVRYLTRNYCEVKIRCEIK 165 (349)
T ss_pred eccceeeeeccccEEEEEEEEEe
Confidence 21111001122345678888754
No 406
>PHA03112 IL-18 binding protein; Provisional
Probab=75.21 E-value=14 Score=24.89 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=14.2
Q ss_pred EEEEcccCcc-cCeEEEEEEec
Q psy7941 101 TLNIRSVRRE-DRGYYMCQVNT 121 (238)
Q Consensus 101 ~L~i~~~~~~-d~G~Y~C~~~~ 121 (238)
.|.+.+++.+ +.-..+|+...
T Consensus 96 ~l~l~~vt~~~~~T~~TCVL~D 117 (141)
T PHA03112 96 DLIVYNVTDEMKFTKLTCVLMD 117 (141)
T ss_pred EEEEEecCCcceecceEEEEec
Confidence 6777777754 34488888744
No 407
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=73.52 E-value=19 Score=22.29 Aligned_cols=80 Identities=20% Similarity=0.211 Sum_probs=45.7
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
+....+..|+++.+.|...-.-+..+.|.-.-.+...... ... ..+.+.+++. | ....|.+.-. |..
T Consensus 10 P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~k~~~~~g----~~W------~~f~LsnV~~-d-s~~~C~~~C~-g~Q 76 (91)
T PF03921_consen 10 PEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLSKTELDSG----PQW------KAFQLSNVTE-D-SSPLCFFNCS-GEQ 76 (91)
T ss_dssp SSEEEEETTEEEEEEEEESSSS-SEEEEESSSEEEEEEEE----TTE------EEEEEEEE-S-C-EEEEEEEEET-TEE
T ss_pred CCccEECCCCCEEEEEcCCCCCCCcceEEEecCCcccCCC----CcE------EEEEEEcccc-C-CeEEEEEEcC-CeE
Confidence 4456788999999999985432234555431111111000 000 1355677775 3 5677998864 556
Q ss_pred ccceEEEEEEeec
Q psy7941 225 VSKRLMLHVHCTY 237 (238)
Q Consensus 225 ~~~~~~l~V~~~p 237 (238)
..+++.++|..+|
T Consensus 77 ~~~~~~ItVY~~P 89 (91)
T PF03921_consen 77 SSASANITVYKPP 89 (91)
T ss_dssp EEEEEEEEEEB--
T ss_pred EEeEEeeEEeCCC
Confidence 6889999999887
No 408
>PHA03286 envelope glycoprotein E; Provisional
Probab=72.15 E-value=11 Score=30.53 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=20.5
Q ss_pred EEEEcccCcccCeEEEEEEecCCC
Q psy7941 101 TLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 101 ~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
+|.+.|+..+++|.|.|++.-++.
T Consensus 308 nL~f~nA~~s~SGLYVfVl~yNGH 331 (492)
T PHA03286 308 SFRLANAQPTDAGLYVVVALYNGR 331 (492)
T ss_pred ceeecCCCcccCceEEEEEEECCc
Confidence 689999999999999999965443
No 409
>PHA03240 envelope glycoprotein M; Provisional
Probab=72.04 E-value=26 Score=25.40 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=21.1
Q ss_pred EEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 194 SVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 194 ~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
.-.+++|.|-++..+|.|+|.-.-....|
T Consensus 101 ~C~NstL~i~~vn~sd~~nYcr~k~~~~g 129 (258)
T PHA03240 101 ECHNSTLIIAHLNLSDAGEYCRKKCPPKG 129 (258)
T ss_pred EeccceEEEEEEeecCcchhhhccCCCCC
Confidence 34567899999999999998544433344
No 410
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=71.65 E-value=22 Score=22.21 Aligned_cols=56 Identities=14% Similarity=0.224 Sum_probs=33.3
Q ss_pred cCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 59 TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 59 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
.+.|++.|.|.-+-.... ........++.+.+.+ .+.+......|.-..+|.+...
T Consensus 31 ~GrPpa~ItW~t~l~G~~--etq~~~~~~GT~TV~S------~y~lVPs~~~~gk~lTCvV~h~ 86 (98)
T cd05890 31 NGKPPSVVRWDTRLKGEA--EFQEIRNQNGTVTVIS------RYRLVPSREAHKQKLTCIVNYR 86 (98)
T ss_pred CCcCCcEeEEEccCCCce--eeeeeCCCCCCEEEEE------EEEEeECHHHcCCEeEEEEEec
Confidence 467799999986421111 1111112244555544 5666677778888999999653
No 411
>PHA03112 IL-18 binding protein; Provisional
Probab=67.50 E-value=35 Score=23.01 Aligned_cols=73 Identities=16% Similarity=0.244 Sum_probs=40.3
Q ss_pred ecCCCcEEEEEEEccc-cC-CeEEEEeCCCeeeEeecC----------CCCCcceEEEeeceEEEEEeecC-CCeEEEEE
Q psy7941 150 VPEGGSAKLVCKAKGY-PT-PKITWRREDNKEIIVRSN----------PPSSQKVFSVESEVLSLTKVTRS-EMGAYQCI 216 (238)
Q Consensus 150 ~~~g~~~~l~C~~~~~-p~-~~~~W~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~i~~~~~~-d~G~y~C~ 216 (238)
.++++++.|.|.+-++ |. .-+.|..++.+....... ..............|.+.++..+ +.-.++|.
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCV 114 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCV 114 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEE
Confidence 3458899999999764 54 368999744322111000 00000001112235666666644 34489999
Q ss_pred eeeCCC
Q psy7941 217 AANGVP 222 (238)
Q Consensus 217 ~~n~~g 222 (238)
.....+
T Consensus 115 L~D~~~ 120 (141)
T PHA03112 115 LMDLDG 120 (141)
T ss_pred EecCCc
Confidence 987766
No 412
>KOG0200|consensus
Probab=64.40 E-value=64 Score=28.00 Aligned_cols=114 Identities=25% Similarity=0.283 Sum_probs=55.2
Q ss_pred EEEEcccCcccCeEEEEEEecCCCcceeeEEE-EEcCCcccccccCCceeecCCCcEEEEEEEccccCCeEEEEeCCCee
Q psy7941 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAFLE-VVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKE 179 (238)
Q Consensus 101 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~-v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~ 179 (238)
.+.+..+...|.|.|+|.+.+ ......+. ......+.....+.......+....+ +...+.+.+.|.......
T Consensus 14 ~~~~~~~~~~~~~~y~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 87 (609)
T KOG0200|consen 14 FLIIDSVVPGDKGFYTCLVSN---INLIISLDDIVIHRPILLAGENANPNTVVTVGVPL---AFSIPQPFIKWGTNLEIE 87 (609)
T ss_pred eEEEEEEEecCCccEEEEEec---CceeeEeecccCcccccccCCCCCcceeeccccee---eeecCCCcceeeeeeccc
Confidence 777778889999999999977 11111122 11110111111122222223333444 333336677776522110
Q ss_pred e--E-eecC---------CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941 180 I--I-VRSN---------PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221 (238)
Q Consensus 180 ~--~-~~~~---------~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~ 221 (238)
. . .... ....... ......+.+.++...+.|.|.|...+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~ 140 (609)
T KOG0200|consen 88 CEDGLFEYKTKKTLSFVEIEYNRLV-DGTFESGLIYNVSLTEAGEYLCWTGRTV 140 (609)
T ss_pred ccccCcchhheeeeeeeeccccccc-cCceEeeeeeccChhhcceeeccCCCcc
Confidence 0 0 0000 0000011 1223367788899999999999997633
No 413
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=63.54 E-value=30 Score=20.76 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=16.9
Q ss_pred EEEEcccCcccCeEEEEEEec
Q psy7941 101 TLNIRSVRREDRGYYMCQVNT 121 (238)
Q Consensus 101 ~L~i~~~~~~d~G~Y~C~~~~ 121 (238)
.+.......+|+|.+.|.+..
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~~ 64 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTASD 64 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEEE
T ss_pred EEEEecCCCCCCEEEEEEEcC
Confidence 556667788999999999943
No 414
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=62.56 E-value=23 Score=21.76 Aligned_cols=32 Identities=22% Similarity=0.462 Sum_probs=21.0
Q ss_pred eeecCCCcEEEEEEEcc--c---cCCeEEEEeCCCeee
Q psy7941 148 MMVPEGGSAKLVCKAKG--Y---PTPKITWRREDNKEI 180 (238)
Q Consensus 148 ~~~~~g~~~~l~C~~~~--~---p~~~~~W~~~~~~~~ 180 (238)
..+..|+.++..|.... . ....+.|.. ++..+
T Consensus 13 pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkl-n~~~i 49 (89)
T PF06328_consen 13 PVVSLGSNVTASCVLKQNCSHSVNASQIVWKL-NGEKI 49 (89)
T ss_dssp SEEETTS-EEEEEEE-CCCHCT-STTCEEEEC-SSCES
T ss_pred CEEeCCCCEEEEEEEECCCCCCcccceEEEEE-CCEEC
Confidence 35778999999999843 2 344799988 44333
No 415
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=60.50 E-value=19 Score=29.63 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=18.1
Q ss_pred eEEEEEcccCcccCeEEEEEEecCC
Q psy7941 99 TWTLNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 99 ~~~L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
...|.+.|+..+++|.|.|++.-++
T Consensus 268 ~~~l~f~~a~~~~sGLYv~V~~~ng 292 (439)
T PF02480_consen 268 GVDLQFTNAPESASGLYVFVVYYNG 292 (439)
T ss_dssp SSSEEESS--GGG-EEEEEEEEETT
T ss_pred CcceEecCCCcccCceEEEEEEECC
Confidence 3489999999999999999995443
No 416
>PHA03282 envelope glycoprotein E; Provisional
Probab=60.15 E-value=20 Score=29.41 Aligned_cols=27 Identities=30% Similarity=0.532 Sum_probs=22.1
Q ss_pred CeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 98 NTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 98 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
+...|.+.|+..+++|.|.|++.-++.
T Consensus 331 n~VdL~F~nAp~saSGLYVfVl~yNGH 357 (540)
T PHA03282 331 HTVNLQLRDASEASGGLYVCVVYVNGH 357 (540)
T ss_pred CccceEecCCCcccCceEEEEEEECCe
Confidence 344899999999999999999964443
No 417
>PHA03282 envelope glycoprotein E; Provisional
Probab=57.53 E-value=29 Score=28.52 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=28.6
Q ss_pred EEeeceEEEEEeecCCCeEEEEEeeeCCCC-CccceEEEEEE
Q psy7941 194 SVESEVLSLTKVTRSEMGAYQCIAANGVPP-TVSKRLMLHVH 234 (238)
Q Consensus 194 ~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~-~~~~~~~l~V~ 234 (238)
...+.+|.|..++.+|+|.|+..+...-.. ...+.+.|.|.
T Consensus 120 s~~n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~ 161 (540)
T PHA03282 120 AVVNGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG 161 (540)
T ss_pred eEecceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence 344667999999999999999997654332 32344556654
No 418
>KOG0613|consensus
Probab=53.15 E-value=25 Score=32.69 Aligned_cols=115 Identities=10% Similarity=-0.095 Sum_probs=58.2
Q ss_pred EEEEcccCcccCeEEEEEEecCCCcceeeE-EEEEcCCcc---cccccCCceeecC--CCcEEEEEEEccccCC--eEEE
Q psy7941 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAF-LEVVIPPDI---SSEETSGDMMVPE--GGSAKLVCKAKGYPTP--KITW 172 (238)
Q Consensus 101 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~-l~v~~~~~~---~~~~~~~~~~~~~--g~~~~l~C~~~~~p~~--~~~W 172 (238)
.+.+..+...+.+.|.|.+.+......... ..+.....- ............. -+.+.+.|...+.+.+ .++|
T Consensus 394 ~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt 473 (1205)
T KOG0613|consen 394 TYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTT 473 (1205)
T ss_pred chhhhhcCcccccccccceeccCCcccccchhhcccccCCCCCccccccccccccccCCcccccccCCCCccccceeEee
Confidence 677888999999999999987654433222 222221110 0011111122222 3778888988776644 5666
Q ss_pred EeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941 173 RREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221 (238)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~ 221 (238)
++++....... .......-..|.+......+.|.|.-......
T Consensus 474 ~~~~~~~s~~s------~~l~r~~~tslLlk~~~~~~~A~~~~a~~~~~ 516 (1205)
T KOG0613|consen 474 IKDGLPLSDRS------VTLTRDVLTSLLLKVASLSDGAQYTRALRTLQ 516 (1205)
T ss_pred ccCCccccccc------ccccccchhhheeeccCCCccchhhhhhhccC
Confidence 66332211100 01111111245555566667777654444333
No 419
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=51.72 E-value=53 Score=19.91 Aligned_cols=53 Identities=17% Similarity=0.133 Sum_probs=30.8
Q ss_pred cEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941 155 SAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP 223 (238)
Q Consensus 155 ~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~ 223 (238)
...|.+.+.+. ...+.|+. ++..+.... ....+. +.....|.|+..+....|.
T Consensus 31 ~~~l~l~a~~~-~~~~~W~v-dg~~~g~~~-----------~~~~~~---~~~~~~G~h~l~vvD~~G~ 83 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFV-DGEPLGTTQ-----------PGHQLF---WQPDRPGEHTLTVVDAQGR 83 (89)
T ss_pred cceEEEEEeCC-CCcEEEEE-CCEEcccCC-----------CCCeEE---eCCCCCeeEEEEEEcCCCC
Confidence 44555555554 44999999 665552110 111121 2334689999999888883
No 420
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=51.38 E-value=46 Score=19.10 Aligned_cols=49 Identities=14% Similarity=0.360 Sum_probs=28.2
Q ss_pred EEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcc
Q psy7941 66 VAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDI 139 (238)
Q Consensus 66 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~ 139 (238)
+.||-++..+.. +... ++.+.++ .++++|+-+. +.....++.=...|.+
T Consensus 13 iswYcN~TRLlR--------------lt~~-----Tlt~~~l----tcNFtCV~qS--Gh~hSiWItW~~qPVL 61 (71)
T PF11049_consen 13 ISWYCNGTRLLR--------------LTQQ-----TLTVVTL----TCNFTCVGQS--GHRHSIWITWYAQPVL 61 (71)
T ss_pred ccEEECCceeee--------------ecCC-----eEeeeee----eEEeeecCCC--CCCceEEEEEcCchhh
Confidence 899998876532 1111 5555333 6889997543 2345556665555543
No 421
>KOG3611|consensus
Probab=50.19 E-value=48 Score=29.40 Aligned_cols=62 Identities=24% Similarity=0.392 Sum_probs=35.1
Q ss_pred cEEEEEEEccccCCeEEEEeCCCe---eeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941 155 SAKLVCKAKGYPTPKITWRREDNK---EIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221 (238)
Q Consensus 155 ~~~l~C~~~~~p~~~~~W~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~ 221 (238)
...|.|...+. ...+.|+..... ..... ..........+.+.+..++..|.|.|.|.+....
T Consensus 571 ~~~l~c~~~~~-~a~~~w~~~~~~~~~~~~~~----~~~~~~~~~~G~lll~~~q~~~~G~y~c~~~e~~ 635 (737)
T KOG3611|consen 571 SEVLRCVPSSN-QAPVVWYHQSTKDGRKEEVR----QRDVVSRTDEGGLVLLSVQKLDGGTYPCYADESS 635 (737)
T ss_pred cceeecccccc-ccceeeEeeccCccccceec----cCcceeecccCceeEEEEeeccCcccccccccCc
Confidence 35777775443 334788742211 01110 1112222234458888899999999999998654
No 422
>PHA03283 envelope glycoprotein E; Provisional
Probab=46.15 E-value=66 Score=27.01 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=22.1
Q ss_pred CCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941 97 ANTWTLNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 97 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
.+...|.+.|+..+++|.|.|++.-++
T Consensus 312 ~~~v~L~f~nap~~~SGLYVfVv~yNg 338 (542)
T PHA03283 312 QNRVDLLFKNAPASASGLYVFVLLYNG 338 (542)
T ss_pred CCCcceEeccCCcccCceEEEEEEECC
Confidence 344599999999999999999995433
No 423
>PHA03283 envelope glycoprotein E; Provisional
Probab=45.85 E-value=44 Score=27.97 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=31.2
Q ss_pred eceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEe
Q psy7941 197 SEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHC 235 (238)
Q Consensus 197 ~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~ 235 (238)
.+.|.|.++..+++|.|+-...+..+ .....+.|.|..
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~ 170 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKK 170 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCc-eEEEEEEEEecC
Confidence 45799999999999999999998766 556667777765
No 424
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=45.65 E-value=6.9 Score=32.07 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=0.0
Q ss_pred ceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEe
Q psy7941 198 EVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHC 235 (238)
Q Consensus 198 ~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~ 235 (238)
+.|.|.+++.+|+|.|+....+..+......+.|.|..
T Consensus 89 ~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~ 126 (439)
T PF02480_consen 89 GGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKG 126 (439)
T ss_dssp --------------------------------------
T ss_pred CceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcC
Confidence 46999999999999999999988876666677777764
No 425
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=45.62 E-value=63 Score=22.47 Aligned_cols=26 Identities=38% Similarity=0.455 Sum_probs=21.6
Q ss_pred CeEEEEEcccCcccCeEEEEEEecCC
Q psy7941 98 NTWTLNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 98 ~~~~L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
...-|.|.+.+.+|+|.|.-++.-++
T Consensus 122 ~~~lL~i~~p~~~dsG~Y~lRV~l~~ 147 (161)
T PF01688_consen 122 NGVLLRIRNPRPEDSGIYYLRVWLDG 147 (161)
T ss_pred cceEEEeCCCCcccceEEEEEEEECC
Confidence 44479999999999999999986543
No 426
>KOG1026|consensus
Probab=45.46 E-value=91 Score=27.81 Aligned_cols=98 Identities=14% Similarity=0.160 Sum_probs=46.1
Q ss_pred EEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEE---ccccCCeEEEEeCCCeeeEeecCCCCCc
Q psy7941 115 YMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKA---KGYPTPKITWRREDNKEIIVRSNPPSSQ 190 (238)
Q Consensus 115 Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~---~~~p~~~~~W~~~~~~~~~~~~~~~~~~ 190 (238)
+.|..++... ....+.+.+..++......... + -.-.|.. .+.|.+.-.|..++.. +...... .
T Consensus 253 ~~c~~E~~~~~~~~~v~~~~~~p~~~~~~~~~~------~--~~~~C~~~~~~~~~~~~~~~~~~~~~-~~~~g~~---~ 320 (774)
T KOG1026|consen 253 DLCIAENAVARSNPSILLVVDLPKAEVLLCSPL------S--DHHNCIPIGITANPGPALHWCYNGSG-LNYRGTV---C 320 (774)
T ss_pred hhhHHHHhhhhcCceeeeEEecccccccCCCCc------c--ccCceeeeeccCCCCCceeeeecCcc-ceEeccc---c
Confidence 7888866433 3334445555443322211110 0 0223543 3456777888773332 2211110 0
Q ss_pred ceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 191 KVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 191 ~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
.........+........+.|.|+|.+.+..|..
T Consensus 321 ~t~s~~~~C~~~~~~~h~~~~~~~~~~e~~~g~~ 354 (774)
T KOG1026|consen 321 VTKSGKEQCLPWNDPPHSHNGNYTLFPELPGGKN 354 (774)
T ss_pred cccccCcCCcccCcCcccccCcceeeecccCccc
Confidence 0000000223333335567899999999998854
No 427
>PHA03286 envelope glycoprotein E; Provisional
Probab=42.85 E-value=53 Score=26.97 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=31.9
Q ss_pred eceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941 197 SEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 197 ~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
.+.|.|.++..+.+|.|+-...|..|......+.|.|.
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~ 163 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVS 163 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEe
Confidence 35799999999999999999999888776667777774
No 428
>PHA03290 envelope glycoprotein I; Provisional
Probab=41.01 E-value=77 Score=24.88 Aligned_cols=37 Identities=22% Similarity=0.220 Sum_probs=26.3
Q ss_pred CeEEEEEcccCcccCeEEEEEEecCCCc-ceeeEEEEE
Q psy7941 98 NTWTLNIRSVRREDRGYYMCQVNTNPMT-KQMAFLEVV 134 (238)
Q Consensus 98 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l~v~ 134 (238)
...-|.|.+...+|+|.|.-++.-++.. ..-..+.+.
T Consensus 127 ~~vLL~I~~P~~~DSGiY~LRV~Ldga~~sDvF~lsv~ 164 (357)
T PHA03290 127 AEIIFKINKPGIEDAGIYLLLVQLDHSRLFDGFFLGLN 164 (357)
T ss_pred cceEEEeCCCCcccCeeEEEEEEeCCCcccceEEEEEE
Confidence 3458999999999999999999655433 233344444
No 429
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=39.70 E-value=74 Score=18.15 Aligned_cols=19 Identities=37% Similarity=0.758 Sum_probs=11.1
Q ss_pred CCCcEEEEEEEccccCCeEEEEe
Q psy7941 152 EGGSAKLVCKAKGYPTPKITWRR 174 (238)
Q Consensus 152 ~g~~~~l~C~~~~~p~~~~~W~~ 174 (238)
.|++++|. |.+...++|++
T Consensus 4 ~G~N~TL~----Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 4 VGSNVTLV----GPPDGPVTWYK 22 (63)
T ss_pred EcCcEEEe----CCCCCceEEEE
Confidence 45555553 43445789983
No 430
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=36.96 E-value=45 Score=18.04 Aligned_cols=17 Identities=12% Similarity=0.315 Sum_probs=13.1
Q ss_pred cCCCeEEEEEeeeCCCC
Q psy7941 207 RSEMGAYQCIAANGVPP 223 (238)
Q Consensus 207 ~~d~G~y~C~~~n~~g~ 223 (238)
.+.+..|.|++.|..|.
T Consensus 7 kdssnsflctvqnkng~ 23 (65)
T PF13220_consen 7 KDSSNSFLCTVQNKNGD 23 (65)
T ss_pred ecCCCceEEEEecccHh
Confidence 34566899999998874
No 431
>PHA03292 envelope glycoprotein I; Provisional
Probab=36.60 E-value=1.5e+02 Score=23.90 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=22.4
Q ss_pred CeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 98 NTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 98 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
...-|.|.+...+|+|.|.-++.-++.
T Consensus 126 ~~vLL~I~~P~~~DSGiY~LRV~Ldga 152 (413)
T PHA03292 126 TNVLLNITGPQPADSGAYILRVKLDHA 152 (413)
T ss_pred cceEEEeCCCCcccceeEEEEEEeCCC
Confidence 445899999999999999999965543
No 432
>KOG1026|consensus
Probab=30.53 E-value=48 Score=29.38 Aligned_cols=28 Identities=36% Similarity=0.663 Sum_probs=24.4
Q ss_pred eeecCCCcEEEEEEEccccCCeEEEEeC
Q psy7941 148 MMVPEGGSAKLVCKAKGYPTPKITWRRE 175 (238)
Q Consensus 148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~ 175 (238)
..+..+..+++.|...+.|.|.+.|+..
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~ 229 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVPCHYWFPN 229 (774)
T ss_pred hhhcccchheeeeecccCCCcceeeecc
Confidence 4567789999999999999999999973
No 433
>PHA03281 envelope glycoprotein E; Provisional
Probab=28.13 E-value=1.3e+02 Score=25.58 Aligned_cols=39 Identities=10% Similarity=0.176 Sum_probs=30.4
Q ss_pred eceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEe
Q psy7941 197 SEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHC 235 (238)
Q Consensus 197 ~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~ 235 (238)
.+.|.|.++....+|.|+-......|...-..+.|.|..
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg 335 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKG 335 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecC
Confidence 457999999999999999999866675544466677764
No 434
>PF11327 DUF3129: Protein of unknown function (DUF3129); InterPro: IPR021476 This eukaryotic family of proteins has no known function.
Probab=26.79 E-value=1.4e+02 Score=21.34 Aligned_cols=26 Identities=15% Similarity=0.507 Sum_probs=19.3
Q ss_pred CeEEEEEcccCcccCeEEEEEEecCC
Q psy7941 98 NTWTLNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 98 ~~~~L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
+...++++.+...=.|.|+|.+...+
T Consensus 91 G~i~mt~hQVN~DGaGP~~C~iD~tg 116 (184)
T PF11327_consen 91 GSISMTIHQVNADGAGPFTCDIDETG 116 (184)
T ss_pred CEEEEEEEEecCCCCcCeEEEECCCC
Confidence 44477778787766899999995543
No 435
>PF15096 G6B: G6B family
Probab=26.32 E-value=50 Score=23.38 Aligned_cols=17 Identities=12% Similarity=0.421 Sum_probs=12.8
Q ss_pred eecCCCeEEEEEeeeCC
Q psy7941 205 VTRSEMGAYQCIAANGV 221 (238)
Q Consensus 205 ~~~~d~G~y~C~~~n~~ 221 (238)
+...|+|+|.|...+..
T Consensus 81 Ls~GDSGTFfCkGr~e~ 97 (224)
T PF15096_consen 81 LSAGDSGTFFCKGRQEE 97 (224)
T ss_pred hhcCCccceEecCcccc
Confidence 34679999999966544
No 436
>PHA03289 envelope glycoprotein I; Provisional
Probab=25.75 E-value=1.3e+02 Score=23.66 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=21.6
Q ss_pred eEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 99 TWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 99 ~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
..-|.|.+...+|+|.|.-++.-++.
T Consensus 121 gvLL~I~~Pr~~DSGiYyLRV~Ldga 146 (352)
T PHA03289 121 GLLLTIIEPRMSDTGIYYIRVSLAGR 146 (352)
T ss_pred ceEEEeCCCCcccCeeEEEEEEeCCC
Confidence 34799999999999999999965543
No 437
>PHA03281 envelope glycoprotein E; Provisional
Probab=24.88 E-value=1.5e+02 Score=25.15 Aligned_cols=25 Identities=16% Similarity=0.188 Sum_probs=20.9
Q ss_pred eEEEEEcccCcccCeEEEEEEecCC
Q psy7941 99 TWTLNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 99 ~~~L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
...|.+.++..+++|.|.|++.-.+
T Consensus 474 ~vdL~F~nApasaSGLYVfVl~yNG 498 (642)
T PHA03281 474 GSALKFVDAAESLSGLYVFIIHFNG 498 (642)
T ss_pred CcceEeccCCcccCceEEEEEEECC
Confidence 3379999999999999999995443
No 438
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=24.48 E-value=2.7e+02 Score=19.84 Aligned_cols=64 Identities=14% Similarity=0.230 Sum_probs=33.8
Q ss_pred EEEEEEcc-ccCCeEEEEeCCCeeeEeecCCCCC----cceEEEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941 157 KLVCKAKG-YPTPKITWRREDNKEIIVRSNPPSS----QKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221 (238)
Q Consensus 157 ~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~ 221 (238)
.-.|..+. ...|.++|.. +...+......... ...-....+...+.+..-.+.-.|.|.+.-..
T Consensus 111 rAvCitseL~s~PtitWsV-gs~rl~n~gftqtwy~iqPGvCgilrS~v~~~R~~G~~~~~y~c~~~~~D 179 (226)
T PF05955_consen 111 RAVCITSELVSQPTITWSV-GSDRLRNDGFTQTWYGIQPGVCGILRSEVRIPRAEGRDNVDYLCEIRALD 179 (226)
T ss_pred EEEEeeccccCCCeEEEEe-ccceeecCCccceeecccCcceeeEeeeeecccCCCCCcccEEecccccc
Confidence 44688765 5688999998 33333222211110 00111122234555555566668999987654
No 439
>KOG3611|consensus
Probab=24.08 E-value=1.8e+02 Score=26.13 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=20.4
Q ss_pred EEEEcccCcccCeEEEEEEecCCCcce
Q psy7941 101 TLNIRSVRREDRGYYMCQVNTNPMTKQ 127 (238)
Q Consensus 101 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~ 127 (238)
.+.+..++..|+|.|.|.+........
T Consensus 613 ~lll~~~q~~~~G~y~c~~~e~~~~~~ 639 (737)
T KOG3611|consen 613 GLVLLSVQKLDGGTYPCYADESSFVST 639 (737)
T ss_pred ceeEEEEeeccCcccccccccCccccc
Confidence 367778889999999999966544333
No 440
>PF03712 Cu2_monoox_C: Copper type II ascorbate-dependent monooxygenase, C-terminal domain; PDB: 1YI9_A 3MLL_A 1SDW_A 3MID_A 1YIP_A 3PHM_A 3MIC_A 3MIB_A 1OPM_A 3MIG_A ....
Probab=21.53 E-value=87 Score=21.58 Aligned_cols=20 Identities=35% Similarity=0.458 Sum_probs=15.0
Q ss_pred ceeEEEecCCEEEEeEEecC
Q psy7941 16 ENVTIAQGRDAIFTCVVNNL 35 (238)
Q Consensus 16 ~~~~v~~g~~~~l~C~~~~~ 35 (238)
+.+.+..||.+..+|.+.+.
T Consensus 85 ~~v~i~~GD~l~~~C~Ydns 104 (156)
T PF03712_consen 85 EPVTIPPGDTLRTECTYDNS 104 (156)
T ss_dssp EEEEE-TT-EEEEEEEEE-T
T ss_pred CceEecCCCEEEEEEEEeCC
Confidence 56789999999999999874
No 441
>PHA03291 envelope glycoprotein I; Provisional
Probab=21.02 E-value=1.8e+02 Score=23.17 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=26.1
Q ss_pred CeEEEEEcccCcccCeEEEEEEecCCCcc-eeeEEEEE
Q psy7941 98 NTWTLNIRSVRREDRGYYMCQVNTNPMTK-QMAFLEVV 134 (238)
Q Consensus 98 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v~ 134 (238)
...-|.|.+...+|+|.|.-++.-++... ....+.+.
T Consensus 127 ~~vLL~i~~P~~~DsGiYvLRV~vdgat~adlF~lg~~ 164 (401)
T PHA03291 127 RQPLLRARGAARAVVGLYVLRVWVEGATNASLFPLGLA 164 (401)
T ss_pred cceEEEecCCCcccceeEEEEEEeCCCcccceEEEeee
Confidence 34479999999999999999996554333 33344444
No 442
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.51 E-value=1.1e+03 Score=25.48 Aligned_cols=86 Identities=16% Similarity=0.300 Sum_probs=45.3
Q ss_pred eecCCCcEEEEEE--EccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe---eceEEEEE--eecCCCeEEEEEee--e
Q psy7941 149 MVPEGGSAKLVCK--AKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE---SEVLSLTK--VTRSEMGAYQCIAA--N 219 (238)
Q Consensus 149 ~~~~g~~~~l~C~--~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~--~~~~d~G~y~C~~~--n 219 (238)
.+..|+.+.|.-. ++......+.|..++|........+.-........ .-.|.-.+ -.....|.|+-.+. |
T Consensus 991 v~~~~~~~~~~~~~~vd~~~~~~~~w~fgDG~~~~~~~~~py~~~~~~~~~~~~q~l~eqnptH~Y~~~G~YTVtLtVsN 1070 (2740)
T TIGR00864 991 VLPPGATLALTAGVLIDMAVEAAFLWNFGDGEQALFEFKPPYNESFPCPDPSPAQVLLEHNVMHIYAAPGEYLATVLASN 1070 (2740)
T ss_pred ccCCCceEEEeeeeEeecccceEEEEEeCCCCeeEEeccCCCcccccCCCCccceeecccCcceEECCCCcEEEEEEEEc
Confidence 3566888888776 45566678999887776443322211111111111 00111111 11235788877654 5
Q ss_pred CCCCCccceEEEEEEe
Q psy7941 220 GVPPTVSKRLMLHVHC 235 (238)
Q Consensus 220 ~~g~~~~~~~~l~V~~ 235 (238)
..| ..++.+.+.|..
T Consensus 1071 ~~~-~it~~i~VsV~~ 1085 (2740)
T TIGR00864 1071 AFE-NISQQINMSVRA 1085 (2740)
T ss_pred CCC-ccceEEEEEEec
Confidence 566 557777777764
No 443
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.29 E-value=1.1e+03 Score=25.45 Aligned_cols=70 Identities=6% Similarity=-0.056 Sum_probs=42.7
Q ss_pred CcccCeEEEEEE--ecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCeEEEEeCCCe
Q psy7941 108 RREDRGYYMCQV--NTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNK 178 (238)
Q Consensus 108 ~~~d~G~Y~C~~--~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~ 178 (238)
+..+.|.|+-.+ .|. ........+.|+.+..-.... .....+..|+.++|.+.....+.-.+.|..+++.
T Consensus 1835 Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~-as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs 1907 (2740)
T TIGR00864 1835 TFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELK-ASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAA 1907 (2740)
T ss_pred ecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEe-cccccccCCCEEEEEEEecCCCceEEEEEeCCCC
Confidence 467888888876 333 223334446665544221111 2223466789999999887666678999885554
Done!