Query psy7941
Match_columns 238
No_of_seqs 170 out of 1416
Neff 11.4
Searched_HMMs 29240
Date Fri Aug 16 22:44:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7941.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7941hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yd6_A PTPRD protein; hydrolas 100.0 2.2E-27 7.5E-32 171.7 18.2 192 6-237 4-206 (212)
2 2yd1_A Tyrosine-protein phosph 100.0 6.8E-27 2.3E-31 169.1 20.5 191 6-237 4-202 (212)
3 2j8h_A Titin, connectin; cardi 100.0 8E-27 2.7E-31 166.7 18.3 189 7-234 3-196 (197)
4 2iep_A Muscle-specific kinase 100.0 1.8E-27 6E-32 169.4 14.5 185 7-237 6-192 (192)
5 4fa8_A Secreted protein BARF1; 99.9 7E-27 2.4E-31 167.6 14.8 180 16-224 1-192 (203)
6 1epf_A NCAM, protein (neural c 99.9 4.6E-26 1.6E-30 161.9 17.9 175 8-222 2-179 (191)
7 2a38_A Titin; Z1Z2, structural 99.9 9E-26 3.1E-30 160.8 18.4 187 5-234 2-194 (194)
8 1rhf_A Tyrosine-protein kinase 99.9 1.9E-25 6.6E-30 157.5 18.3 177 8-234 2-182 (182)
9 3lcy_A Titin; A-BAND, IG tande 99.9 1.9E-25 6.4E-30 159.3 18.5 189 4-235 3-196 (197)
10 2v5t_A NCAM2, N-CAM 2, neural 99.9 5.3E-26 1.8E-30 161.2 15.5 183 8-234 2-187 (189)
11 2wv3_A Neuroplastin; igcam, me 99.9 2.1E-25 7.3E-30 158.5 18.1 182 8-234 3-189 (190)
12 3rbs_A Myomesin-1; immunoglobu 99.9 1.2E-25 4E-30 161.9 16.7 181 7-233 2-205 (207)
13 2c5d_C AXL oncogene, tyrosine- 99.9 2.9E-25 1E-29 158.3 18.6 181 8-233 2-191 (195)
14 2v44_A NCAM2, neural cell adhe 99.9 5.4E-25 1.9E-29 156.2 18.6 182 10-234 4-188 (189)
15 2rik_A Titin; I-SET IG fold, p 99.9 8.3E-25 2.8E-29 164.8 20.6 190 6-237 3-193 (284)
16 2va4_A NCAM2, N-CAM 2, neural 99.9 6.9E-25 2.4E-29 155.8 18.5 185 8-234 2-192 (192)
17 1f97_A Junction adhesion molec 99.9 9.1E-25 3.1E-29 157.6 18.3 193 9-235 2-207 (212)
18 1qz1_A Neural cell adhesion mo 99.9 9.5E-25 3.3E-29 165.0 19.1 191 8-237 2-195 (291)
19 2v9r_A Roundabout homolog 1; p 99.9 8.4E-26 2.9E-30 163.1 12.2 197 2-237 3-204 (212)
20 2nzi_A Titin; IG-domain, FNIII 99.9 7.2E-25 2.5E-29 166.8 18.0 192 7-237 3-199 (305)
21 3sgj_C Human FCG3A receptor; r 99.9 9.8E-25 3.3E-29 156.8 17.3 169 7-237 6-176 (204)
22 3sbw_C Programmed cell death 1 99.9 7.8E-24 2.7E-28 153.9 21.1 198 12-237 5-213 (222)
23 1fnl_A Low affinity immunoglob 99.9 2.1E-24 7.3E-29 151.3 17.0 168 7-236 6-175 (175)
24 3r4d_A CEA-related cell adhesi 99.9 8.6E-25 2.9E-29 157.4 15.3 188 12-237 3-202 (208)
25 3grw_A Fibroblast growth facto 99.9 8.7E-25 3E-29 160.9 15.6 198 4-237 7-220 (241)
26 3jz7_A MCAR, CAR, coxsackievir 99.9 3.6E-25 1.2E-29 159.8 13.2 196 11-237 3-214 (214)
27 3k0w_A Mucosa-associated lymph 99.9 1E-24 3.5E-29 158.4 15.4 172 6-235 16-202 (218)
28 3qs9_E FL cytokine receptor; i 99.9 1.8E-24 6.1E-29 176.1 18.0 182 14-237 233-416 (527)
29 2yd9_A Receptor-type tyrosine- 99.9 2.9E-24 1E-28 163.5 18.1 188 6-233 4-199 (304)
30 2wim_A N-CAM 2, NCAM2, neural 99.9 6.1E-24 2.1E-28 160.6 19.1 200 20-237 67-286 (291)
31 2rik_A Titin; I-SET IG fold, p 99.9 1.9E-23 6.4E-28 157.4 21.1 182 8-234 98-283 (284)
32 3ojm_B Fibroblast growth facto 99.9 1.1E-24 3.7E-29 159.2 13.8 195 7-237 14-223 (231)
33 2vr9_A Roundabout 1, ROBO; imm 99.9 1.4E-24 4.9E-29 157.3 14.2 195 3-233 4-205 (217)
34 1f2q_A High affinity immunoglo 99.9 1E-24 3.6E-29 153.1 12.6 170 7-238 3-174 (176)
35 4fqp_A Poliovirus receptor; im 99.9 1.3E-23 4.3E-28 160.6 19.6 199 20-237 86-306 (313)
36 1qz1_A Neural cell adhesion mo 99.9 2.1E-24 7.1E-29 163.1 14.9 188 8-235 100-290 (291)
37 4f80_A Butyrophilin subfamily 99.9 1.4E-23 4.7E-28 153.1 18.2 191 13-235 9-213 (226)
38 3b43_A Titin; I-SET IG fold, e 99.9 5.4E-24 1.8E-28 175.3 17.8 189 7-237 196-385 (570)
39 1vca_A VCAM-D1,2, human vascul 99.9 1.9E-23 6.6E-28 149.8 18.5 181 16-238 9-200 (202)
40 3kld_A Contactin 4, axcam, BIG 99.9 2.6E-24 8.7E-29 169.1 15.1 171 14-234 211-382 (384)
41 3p2t_A Leukocyte immunoglobuli 99.9 8.6E-24 2.9E-28 150.9 16.4 182 7-234 4-195 (196)
42 3qs7_E FL cytokine receptor; i 99.9 8E-24 2.7E-28 168.0 17.8 182 14-237 233-416 (423)
43 1nbq_A JAM, junctional adhesio 99.9 7.5E-25 2.6E-29 157.7 10.5 193 8-234 4-208 (209)
44 4frw_A Poliovirus receptor-rel 99.9 3.5E-23 1.2E-27 149.6 19.2 194 13-234 4-210 (218)
45 3b43_A Titin; I-SET IG fold, e 99.9 2E-23 6.9E-28 171.9 20.2 185 8-237 290-478 (570)
46 2ny1_B T-cell surface glycopro 99.9 6.8E-24 2.3E-28 149.9 15.0 172 16-237 3-181 (184)
47 2d3v_A Leukocyte immunoglobuli 99.9 8.7E-24 3E-28 150.9 15.5 182 7-233 4-195 (196)
48 3laf_A Deleted in colorectal c 99.9 2.6E-24 8.8E-29 169.8 13.9 180 10-237 223-403 (403)
49 2fbo_J V1V2;, variable region- 99.9 7.8E-24 2.7E-28 156.6 15.6 187 11-223 5-238 (250)
50 3bp6_B Programmed cell death 1 99.9 2.6E-23 8.9E-28 149.1 17.4 186 11-235 5-193 (202)
51 2ec8_A MAST/stem cell growth f 99.9 4.5E-23 1.5E-27 168.2 20.8 197 6-237 209-413 (524)
52 1ugn_A LIR1, leukocyte immunog 99.9 1.2E-23 4E-28 150.5 15.1 185 7-234 4-197 (198)
53 2ocw_A Polymeric-immunoglobuli 99.9 8E-23 2.7E-27 168.7 22.3 201 8-237 331-548 (585)
54 2x1w_L Vascular endothelial gr 99.9 7.1E-24 2.4E-28 153.3 14.1 185 14-238 13-210 (213)
55 2wim_A N-CAM 2, NCAM2, neural 99.9 2.5E-23 8.5E-28 157.2 16.8 188 7-237 3-193 (291)
56 2jll_A NCAM2, neural cell adhe 99.9 4.5E-23 1.5E-27 162.0 18.7 190 8-237 1-196 (389)
57 1oll_A NK receptor; immune sys 99.9 1.3E-22 4.3E-27 143.9 18.8 177 7-234 3-187 (188)
58 4i0k_A CD276 antigen; immunogl 99.9 3.4E-24 1.2E-28 155.8 10.9 197 16-238 3-209 (222)
59 3ry4_A Low affinity immunoglob 99.9 2.6E-23 8.8E-28 145.0 14.3 167 7-234 3-170 (170)
60 2o26_X MAST/stem cell growth f 99.9 2.3E-23 7.8E-28 157.5 14.9 199 20-237 64-290 (290)
61 3s97_C Contactin-1; carbonic a 99.9 1.1E-23 3.8E-28 150.6 12.2 180 8-234 7-200 (201)
62 3p3y_A Neurofascin; IG domains 99.9 4.4E-23 1.5E-27 162.7 16.6 180 8-234 219-402 (404)
63 2gi7_A GPVI protein; IG-like d 99.9 1.1E-22 3.8E-27 143.7 17.0 167 7-233 7-183 (184)
64 2r15_A Myomesin-1; sarcomeric 99.9 3.4E-22 1.1E-26 144.2 19.3 156 62-236 31-211 (212)
65 3mj8_L Stimulatory hamster ant 99.9 9.5E-23 3.2E-27 147.3 16.1 182 9-222 2-201 (213)
66 2ifg_A High affinity nerve gro 99.9 1.5E-24 5.2E-29 168.1 7.0 184 6-237 156-347 (347)
67 3nl4_L Antigen binding fragmen 99.9 3.2E-22 1.1E-26 144.5 18.6 180 9-218 2-198 (213)
68 3mj6_A Junctional adhesion mol 99.9 8.6E-23 2.9E-27 152.6 16.0 199 8-235 5-237 (268)
69 4fom_A Poliovirus receptor-rel 99.9 1.4E-23 4.8E-28 159.9 11.1 198 20-237 81-302 (308)
70 3b5h_A Cervical EMMPRIN, HAB18 99.9 6.9E-22 2.4E-26 139.5 19.1 168 18-235 8-183 (184)
71 3ejj_X Macrophage colony-stimu 99.9 9.6E-23 3.3E-27 153.8 15.2 185 11-237 92-283 (289)
72 3laf_A Deleted in colorectal c 99.9 2E-22 7E-27 158.9 17.6 187 8-237 121-313 (403)
73 3auv_A SC-DSFV derived from th 99.9 1E-21 3.4E-26 147.6 20.3 201 7-235 11-254 (276)
74 1nkr_A P58-CL42 KIR; inhibitor 99.9 3.6E-21 1.2E-25 137.9 21.8 185 2-233 2-200 (201)
75 1uct_A Immunoglobulin alpha FC 99.9 1.1E-22 3.9E-27 147.4 14.0 180 7-236 8-199 (218)
76 4fmk_A Poliovirus receptor-rel 99.9 3.1E-22 1.1E-26 145.3 16.1 196 14-235 7-219 (225)
77 1bih_A Hemolin; insect immunit 99.9 2.1E-22 7.2E-27 158.4 16.2 174 15-233 219-394 (395)
78 1cs6_A Axonin-1; neural cell a 99.9 2.1E-22 7.2E-27 157.8 16.1 174 8-234 206-381 (382)
79 4fom_A Poliovirus receptor-rel 99.9 1.3E-22 4.3E-27 154.7 14.4 193 17-237 8-212 (308)
80 2yd9_A Receptor-type tyrosine- 99.9 1.4E-22 4.8E-27 154.2 14.6 180 9-237 109-293 (304)
81 3r06_A Anti-mouse CD3epsilon a 99.9 9.7E-22 3.3E-26 142.0 18.0 184 9-222 2-201 (213)
82 1hng_A CD2; T lymphocyte adhes 99.9 1.6E-22 5.6E-27 141.8 13.4 165 16-231 4-172 (176)
83 2wng_A Tyrosine-protein phosph 99.9 4E-22 1.4E-26 153.2 16.7 188 8-223 3-205 (327)
84 3d9a_L Light chain of hyhel10 99.9 7.5E-22 2.6E-26 142.5 16.9 183 10-222 3-201 (213)
85 3kld_A Contactin 4, axcam, BIG 99.9 4.1E-22 1.4E-26 156.5 16.6 196 21-237 71-296 (384)
86 2v5m_A Dscam; neurobiology SPL 99.9 2.2E-22 7.5E-27 158.0 14.9 167 16-233 220-387 (388)
87 3u83_A Poliovirus receptor-rel 99.9 8.6E-22 3E-26 151.4 17.9 205 8-237 14-232 (331)
88 2pet_A Lutheran blood group gl 99.9 5.5E-22 1.9E-26 144.9 16.0 193 12-234 4-230 (231)
89 1ry7_B FGFR-3, fibroblast grow 99.9 7.4E-23 2.5E-27 157.6 11.7 186 16-237 131-329 (334)
90 1nqb_A Single-chain antibody f 99.9 3.1E-21 1.1E-25 143.3 20.0 197 13-235 5-233 (256)
91 2ghw_B Anti-SARS SCFV antibody 99.9 2.6E-21 8.8E-26 142.9 19.2 200 10-234 5-241 (247)
92 2y23_A Myomesin; structural pr 99.9 2.4E-21 8.1E-26 147.7 19.6 182 8-234 106-311 (312)
93 3uzq_A Anti-dengue MAB 4E11; d 99.9 2.4E-21 8.3E-26 143.6 19.0 202 10-235 3-244 (253)
94 3juy_B 3B3 single chain varian 99.9 7.6E-21 2.6E-25 141.2 21.7 204 6-233 4-255 (256)
95 3oq3_B IFN-alpha/beta binding 99.9 9.4E-22 3.2E-26 151.3 17.1 184 8-233 128-328 (329)
96 3sob_L Antibody light chain; b 99.9 1.5E-21 5.1E-26 143.2 17.4 185 8-222 24-224 (237)
97 2y25_A Myomesin; structural pr 99.9 4.2E-21 1.4E-25 146.6 20.6 157 61-236 135-316 (317)
98 2o26_X MAST/stem cell growth f 99.9 9.6E-22 3.3E-26 148.6 16.7 171 6-234 10-182 (290)
99 3umt_A SCFV heavy chain and li 99.9 2.9E-21 9.9E-26 143.5 19.0 199 15-237 9-247 (256)
100 3pv7_A B7-H6, IG-like domain-c 99.9 6.9E-23 2.3E-27 151.5 10.0 200 12-237 7-228 (248)
101 3s96_B 3B5H10 FAB light chain; 99.9 9.3E-22 3.2E-26 142.5 15.6 184 9-222 2-208 (218)
102 3o4o_C Interleukin-1 receptor 99.9 6.1E-23 2.1E-27 158.5 9.8 196 6-235 16-220 (339)
103 1p6f_A NKP46, natural cytotoxi 99.9 3.4E-21 1.2E-25 141.7 18.4 179 7-236 6-192 (242)
104 1lk3_L 9D7 light chain; antige 99.9 2.8E-21 9.5E-26 139.3 17.7 182 10-222 3-200 (210)
105 3rjd_A High affinity immunoglo 99.9 2E-21 6.7E-26 144.6 17.2 165 8-235 1-167 (262)
106 3u83_A Poliovirus receptor-rel 99.9 2E-21 6.7E-26 149.4 17.7 198 20-237 99-322 (331)
107 4dep_C Interleukin-1 receptor 99.9 5.7E-22 1.9E-26 153.6 14.7 199 20-235 86-333 (349)
108 3esu_F Antibody 14B7* light ch 99.9 6E-21 2.1E-25 141.2 19.6 185 8-219 4-231 (250)
109 4dep_C Interleukin-1 receptor 99.9 9.6E-22 3.3E-26 152.3 15.9 194 13-235 12-217 (349)
110 2p1y_A Bispecific alpha/beta T 99.9 5.8E-21 2E-25 140.2 19.3 185 10-221 2-222 (238)
111 1qok_A MFE-23 recombinant anti 99.9 1.1E-20 3.7E-25 142.4 21.0 199 12-235 30-268 (282)
112 2ocw_A Polymeric-immunoglobuli 99.9 8.2E-21 2.8E-25 156.7 21.9 199 12-236 4-222 (585)
113 4fqp_A Poliovirus receptor; im 99.9 2.9E-21 1E-25 147.5 17.4 203 11-237 3-217 (313)
114 3dmk_A DOWN syndrome cell adhe 99.9 7.9E-22 2.7E-26 168.6 15.8 184 14-235 625-809 (816)
115 1itb_B Type 1 interleukin-1 re 99.9 9.6E-22 3.3E-26 150.2 14.6 182 17-234 112-313 (315)
116 1f3r_B FV antibody fragment; I 99.9 1.9E-21 6.5E-26 144.6 15.8 183 15-221 7-232 (257)
117 2zg1_A Sialic acid-binding IG- 99.9 1.5E-21 5E-26 141.1 14.7 191 12-233 4-213 (214)
118 3tv3_L PGT128 light chain, IG 99.9 8.7E-22 3E-26 142.0 13.2 181 9-222 2-199 (211)
119 1hxm_B Gamma-delta T-cell rece 99.9 8.2E-21 2.8E-25 139.9 18.7 187 9-223 2-218 (242)
120 4dkd_C Macrophage colony-stimu 99.9 2.9E-22 1E-26 151.4 11.1 192 4-237 85-283 (292)
121 2if7_A SLAM family member 6; N 99.9 2.3E-21 7.9E-26 138.0 14.8 171 13-229 3-186 (193)
122 3p3y_A Neurofascin; IG domains 99.9 5.9E-21 2E-25 150.5 18.4 198 20-237 84-313 (404)
123 1moe_A Anti-CEA MAB T84.66; an 99.9 1.7E-20 5.9E-25 137.9 19.6 188 9-219 2-219 (240)
124 3eow_R Poliovirus receptor; im 99.9 1.8E-22 6.3E-27 146.6 8.7 194 14-237 5-212 (221)
125 3gkz_A Anti-methamphetamine si 99.9 2E-20 6.7E-25 139.0 19.8 200 12-235 12-249 (257)
126 2znx_A SCFV; fluorotryptohpan, 99.9 3.2E-20 1.1E-24 136.7 20.7 184 9-220 2-222 (242)
127 1c1e_H Catalytic antibody 1E9 99.9 2.8E-21 9.5E-26 140.2 14.6 181 13-222 5-208 (219)
128 3ejj_X Macrophage colony-stimu 99.9 3.6E-21 1.2E-25 145.2 14.9 177 6-234 2-180 (289)
129 1b6u_A KIR2DL3, P58 killer cel 99.9 3.8E-20 1.3E-24 137.2 20.0 185 7-237 6-203 (257)
130 3tf7_C 42F3 MUT7 SCFV (42F3 al 99.9 3.9E-20 1.3E-24 137.4 20.1 187 9-222 4-234 (256)
131 3rjd_A High affinity immunoglo 99.9 1.4E-20 4.6E-25 140.0 17.4 185 20-234 55-261 (262)
132 2c1o_A IGK-C protein; FAB frag 99.9 1E-20 3.5E-25 140.3 16.6 190 8-222 38-243 (254)
133 3bkj_L WO2 IGG2A FAB fragment 99.9 8.7E-21 3E-25 140.6 16.0 190 8-222 34-239 (252)
134 1e07_A Carcinoembryonic antige 99.9 9.8E-21 3.3E-25 157.9 18.2 172 12-237 385-559 (642)
135 1q9r_B S25-2 FAB (IGG1K) heavy 99.9 2.3E-21 7.8E-26 141.0 12.7 179 15-222 7-211 (222)
136 2xzc_L FAB A.17 light chain; i 99.9 1.5E-20 5.2E-25 136.0 17.0 183 11-222 4-203 (216)
137 1ry7_B FGFR-3, fibroblast grow 99.9 1.2E-22 4.1E-27 156.5 5.8 186 7-235 7-216 (334)
138 3qs7_E FL cytokine receptor; i 99.9 3.7E-21 1.3E-25 152.7 14.2 181 9-237 49-230 (423)
139 1mju_H Immunoglobulin MS6-12; 99.9 5.5E-21 1.9E-25 139.5 13.9 195 13-237 5-219 (227)
140 1svz_A Immunoglobulin;, single 99.9 8.7E-20 3E-24 134.7 20.3 189 9-220 2-228 (247)
141 4dzb_B Vbeta2 (MAIT T cell rec 99.9 1.8E-20 6.2E-25 138.3 16.4 184 10-222 3-219 (246)
142 1jbj_A CD3 epsilon and gamma e 99.9 1.3E-21 4.5E-26 138.4 9.7 144 19-223 10-178 (186)
143 2v5m_A Dscam; neurobiology SPL 99.9 6.4E-21 2.2E-25 149.7 14.6 195 8-237 103-308 (388)
144 1e07_A Carcinoembryonic antige 99.9 1.5E-20 5.2E-25 156.8 17.7 173 11-237 206-381 (642)
145 1q0x_L FAB 9B1, light chain; a 99.9 2E-20 6.8E-25 135.0 16.1 184 11-222 4-203 (212)
146 2fbj_H IGA-kappa J539 FAB (hea 99.9 6.1E-20 2.1E-24 133.3 18.6 181 15-224 7-211 (220)
147 3d9a_H Heavy chain of hyhel10 99.9 7.7E-21 2.6E-25 137.0 13.7 179 15-222 7-202 (210)
148 1pz5_B Heavy chain of FAB (SYA 99.9 1.4E-20 4.6E-25 136.7 15.0 181 14-222 6-209 (220)
149 3vh8_G Killer cell immunoglobu 99.9 3.9E-20 1.3E-24 141.5 18.1 184 8-237 119-315 (316)
150 2ec8_A MAST/stem cell growth f 99.9 5.7E-21 1.9E-25 155.7 14.0 199 20-237 87-311 (524)
151 1ypz_F T-cell receptor gamma c 99.9 2E-20 6.9E-25 136.7 15.5 198 10-238 3-228 (230)
152 2gjj_A A21 single-chain antibo 99.9 1.8E-19 6.1E-24 134.4 20.5 192 7-220 4-239 (264)
153 3m8o_H Immunoglobulin A1 heavy 99.9 1.5E-19 5.1E-24 131.3 19.6 180 14-222 6-211 (221)
154 3oq3_B IFN-alpha/beta binding 99.9 1E-20 3.5E-25 145.5 14.0 183 14-237 35-226 (329)
155 3ux9_B SCFV antibody; five hel 99.9 4.5E-20 1.5E-24 137.0 16.9 181 14-220 8-235 (256)
156 1dr9_A B7-1 (CD80), T lymphocy 99.9 4.9E-20 1.7E-24 131.8 16.6 181 16-230 2-196 (201)
157 1wio_A CD4, T-cell surface gly 99.9 5.5E-21 1.9E-25 148.9 12.5 172 16-237 2-180 (363)
158 4dkd_C Macrophage colony-stimu 99.9 1.5E-21 5E-26 147.5 8.5 176 7-235 3-181 (292)
159 1nfd_E H57 FAB; complex (immun 99.8 3.7E-21 1.3E-25 138.8 9.9 181 11-223 3-201 (212)
160 3dmk_A DOWN syndrome cell adhe 99.8 4.9E-20 1.7E-24 157.6 18.5 187 6-237 427-619 (816)
161 2dru_A Chimera of CD48 antigen 99.8 4.6E-20 1.6E-24 129.7 15.0 158 15-223 6-170 (180)
162 3omz_A Human vdelta1 gamma del 99.8 7.9E-20 2.7E-24 135.9 17.0 187 8-220 2-231 (259)
163 2rcj_C Light chain; immunoglob 99.8 1.2E-19 4.2E-24 147.8 19.6 188 12-230 4-209 (523)
164 2gki_A Nuclease; anti-DNA anti 99.8 1.2E-19 4.3E-24 137.1 18.3 185 13-221 27-258 (291)
165 1x9q_A SCFV, 4M5.3 anti-fluore 99.8 1.2E-19 4E-24 135.7 17.9 192 7-220 14-254 (268)
166 4ei6_B Vbeta16 XV19 type II na 99.8 6.4E-20 2.2E-24 135.2 16.0 185 8-222 2-218 (245)
167 1dee_B IGM RF 2A2; FAB-IBP com 99.8 2.6E-19 8.8E-24 130.3 18.9 182 15-223 7-216 (223)
168 3pl6_D MBP peptide / T-cell re 99.8 5.1E-20 1.7E-24 137.6 15.4 185 8-222 26-240 (268)
169 1bih_A Hemolin; insect immunit 99.8 1E-20 3.6E-25 148.8 12.0 181 6-224 4-190 (395)
170 3o4o_C Interleukin-1 receptor 99.8 4.7E-21 1.6E-25 147.9 9.8 198 20-233 88-333 (339)
171 1sy6_A T-cell surface glycopro 99.8 1.6E-20 5.6E-25 134.7 11.9 159 20-234 15-203 (204)
172 1cs6_A Axonin-1; neural cell a 99.8 6.8E-20 2.3E-24 143.6 16.4 193 23-237 72-295 (382)
173 3nl4_H Antigen binding fragmen 99.8 4E-20 1.4E-24 133.8 13.9 176 13-222 4-202 (215)
174 1op3_H FAB 2G12, heavy chain; 99.8 1.1E-19 3.6E-24 132.5 16.1 179 15-222 7-213 (225)
175 2wng_A Tyrosine-protein phosph 99.8 2.1E-20 7.2E-25 143.6 13.0 181 18-233 127-318 (327)
176 2rcj_C Light chain; immunoglob 99.8 8.6E-20 2.9E-24 148.8 17.2 184 7-223 218-409 (523)
177 3nfj_J T cell receptor beta ch 99.8 1.1E-19 3.7E-24 134.1 16.0 183 11-222 4-218 (245)
178 2oz4_A Intercellular adhesion 99.8 2E-20 6.7E-25 139.6 12.1 156 15-236 105-265 (265)
179 3fku_X Neutralizing antibody F 99.8 1.4E-19 4.8E-24 136.1 16.3 186 10-221 3-234 (280)
180 1ccz_A Protein (CD58); LFA-3, 99.8 1.1E-19 3.6E-24 126.8 14.4 160 16-229 3-165 (171)
181 1wio_A CD4, T-cell surface gly 99.8 5.9E-20 2E-24 143.1 14.4 188 19-234 73-292 (363)
182 2y23_A Myomesin; structural pr 99.8 3.9E-19 1.3E-23 135.4 18.6 166 15-222 8-190 (312)
183 3vh8_G Killer cell immunoglobu 99.8 8.1E-20 2.8E-24 139.7 14.8 182 7-235 23-215 (316)
184 3qib_D 2B4 beta chain; IG doma 99.8 1.1E-19 3.7E-24 136.0 15.0 185 8-222 27-243 (270)
185 3q5y_A TCR N15 beta; IG, T cel 99.8 2.8E-19 9.6E-24 131.4 16.4 185 9-222 3-212 (240)
186 3liz_H 4C3 monoclonal antibody 99.8 6.4E-20 2.2E-24 136.0 12.9 181 14-222 6-208 (253)
187 3v2a_R Vascular endothelial gr 99.8 3.1E-22 1.1E-26 170.0 0.0 194 8-237 550-758 (772)
188 1qgc_4 Protein (immunoglobulin 99.8 2.6E-19 8.7E-24 142.8 16.7 188 10-223 3-206 (438)
189 2j6e_L IGM, FAB light chain; a 99.8 1.7E-20 5.8E-25 137.4 8.8 192 8-229 20-229 (234)
190 1dn0_B IGM-kappa cold agglutin 99.8 6.3E-19 2.2E-23 129.0 17.0 182 15-223 7-216 (232)
191 3bqu_C 3H6 FAB light chain; be 99.8 7.5E-21 2.6E-25 139.2 6.7 185 8-222 23-223 (233)
192 3mjg_X Beta-type platelet-deri 99.8 5.4E-20 1.9E-24 138.8 10.7 171 18-237 105-280 (289)
193 3bae_H WO2 IGG2A FAB fragment 99.8 1.1E-19 3.9E-24 132.6 12.0 181 15-222 7-214 (228)
194 2wbj_D OB TCR; transmembrane, 99.8 9.2E-19 3.1E-23 131.6 16.7 186 8-222 24-244 (279)
195 1za6_B IGG heavy chain; immuno 99.8 3.5E-19 1.2E-23 137.8 14.3 181 14-223 6-206 (344)
196 1iga_A IGA1; immunoglobulin; N 99.8 3.2E-18 1.1E-22 138.0 19.8 190 12-230 5-222 (475)
197 2vol_A Murine IGG FC; FC, zinc 99.8 3.6E-19 1.2E-23 128.0 12.8 180 11-222 5-196 (207)
198 2rgs_A I, IG gamma-2B heavy ch 99.8 2.5E-19 8.5E-24 129.9 12.0 184 7-222 8-204 (218)
199 2xqy_G A13-D6.3 monoclonal ant 99.8 1.2E-18 4E-23 129.7 15.8 181 13-222 11-213 (261)
200 1hnf_A CD2; T lymphocyte adhes 99.8 1.3E-18 4.4E-23 122.3 14.9 160 15-224 6-171 (182)
201 3qhz_H Human monoclonal antibo 99.8 7.7E-19 2.6E-23 128.5 14.2 181 15-222 7-217 (232)
202 1c5d_H Monoclonal antibody aga 99.8 1.9E-18 6.6E-23 124.9 16.1 177 15-222 7-204 (215)
203 3v2a_R Vascular endothelial gr 99.8 1.1E-19 3.7E-24 154.4 11.0 186 14-237 230-421 (772)
204 1itb_B Type 1 interleukin-1 re 99.8 4.2E-20 1.4E-24 141.1 7.1 171 12-224 9-189 (315)
205 1bec_A 14.3.D T cell antigen r 99.8 2.2E-18 7.5E-23 126.5 16.0 181 11-222 2-211 (238)
206 1qgc_4 Protein (immunoglobulin 99.8 1.5E-18 5.2E-23 138.3 15.8 181 21-234 129-337 (438)
207 3tv3_H PGT128 heavy chain, IG 99.8 9.2E-19 3.1E-23 128.7 13.1 182 14-222 6-225 (239)
208 3bn9_D E2 FAB heavy chain; ant 99.8 1.1E-18 3.7E-23 129.4 13.6 179 15-222 7-218 (257)
209 3qs9_E FL cytokine receptor; i 99.8 6E-19 2E-23 143.6 13.3 177 14-237 54-230 (527)
210 3mjg_X Beta-type platelet-deri 99.8 1.3E-18 4.3E-23 131.3 14.2 171 9-235 1-178 (289)
211 3u2s_H PG9 heavy chain; greek 99.8 1.7E-18 5.7E-23 127.9 13.9 182 12-222 3-226 (248)
212 1gsm_A Madcam-1, mucosal addre 99.8 8.3E-18 2.8E-22 119.8 16.3 161 17-222 16-193 (210)
213 1z7z_I Intercellular adhesion 99.8 1.1E-18 3.6E-23 139.7 12.4 157 11-223 2-167 (450)
214 1oga_E TRBC1, T-cell receptor 99.8 4.5E-18 1.5E-22 126.0 14.5 185 8-222 3-217 (252)
215 1z7z_I Intercellular adhesion 99.8 5.1E-18 1.7E-22 135.8 15.9 177 8-235 85-282 (450)
216 3to4_D NKT vbeta2 (mouse varia 99.8 3.1E-18 1.1E-22 126.9 13.4 180 11-221 4-217 (253)
217 2wqr_A IG epsilon chain C regi 99.8 7.7E-19 2.6E-23 134.7 10.4 178 11-223 116-309 (323)
218 2oz4_A Intercellular adhesion 99.8 1.4E-17 4.8E-22 124.1 16.8 160 19-237 14-184 (265)
219 1hzh_H IGG, immunoglobulin hea 99.8 2.9E-18 1E-22 137.5 13.9 179 14-222 6-217 (457)
220 1ypz_E T cell receptor delta, 99.8 7.5E-17 2.6E-21 115.8 19.1 174 11-222 4-197 (207)
221 3n9g_H FAB fragment of MAB CR4 99.8 1.5E-17 5.2E-22 121.4 15.7 178 15-222 7-213 (230)
222 1igt_B IGG2A intact antibody - 99.8 1.5E-17 5.1E-22 132.9 16.2 182 13-223 5-208 (444)
223 3o3u_N Maltose-binding peripla 99.8 6.3E-18 2.2E-22 139.4 13.2 177 15-222 373-565 (581)
224 3mtr_A N-CAM-1, NCAM-1, neural 99.8 7E-17 2.4E-21 116.6 16.5 188 6-237 17-211 (215)
225 1l6x_A Immunoglobulin gamma-1 99.8 9.9E-18 3.4E-22 120.5 11.7 170 21-222 16-196 (207)
226 2w59_A IGY FCU3-4; immunoglobu 99.8 7.5E-18 2.6E-22 123.2 10.8 180 8-222 12-216 (231)
227 1igt_B IGG2A intact antibody - 99.7 4.2E-18 1.5E-22 136.1 9.4 170 20-224 135-331 (444)
228 3mlr_H Human monoclonal anti-H 99.7 5.4E-17 1.9E-21 118.2 14.2 179 15-222 7-214 (226)
229 1igy_B IGG1 intact antibody MA 99.7 4.9E-18 1.7E-22 135.3 9.0 182 13-223 4-204 (434)
230 1i1c_A IGG2A, IG gamma-2A chai 99.7 1.4E-17 4.9E-22 122.2 10.7 182 8-222 15-210 (239)
231 2wqr_A IG epsilon chain C regi 99.7 5.5E-18 1.9E-22 129.9 8.5 183 7-222 6-202 (323)
232 3sob_H Antibody heavy chain, l 99.7 8.2E-17 2.8E-21 119.4 14.3 178 15-222 30-239 (256)
233 3iu4_H CHP3 FAB heavy chain; a 99.7 3.9E-17 1.3E-21 121.6 12.4 179 15-222 7-212 (263)
234 2y25_A Myomesin; structural pr 99.7 1.3E-17 4.3E-22 127.3 9.9 179 7-233 6-198 (317)
235 1zvo_C Myeloma immunoglobulin 99.7 9E-16 3.1E-20 124.8 20.6 186 14-224 6-222 (512)
236 1iga_A IGA1; immunoglobulin; N 99.7 3E-16 1E-20 126.4 15.6 169 21-224 139-335 (475)
237 1hxm_A Gamma-delta T-cell rece 99.7 9.5E-16 3.3E-20 111.6 16.3 177 11-222 4-198 (229)
238 1za6_B IGG heavy chain; immuno 99.7 9.7E-17 3.3E-21 124.1 11.1 180 8-222 120-329 (344)
239 1hzh_H IGG, immunoglobulin hea 99.7 8.7E-17 3E-21 129.0 10.3 176 9-222 133-338 (457)
240 3knb_B Obscurin-like protein 1 99.7 1.6E-16 5.5E-21 101.7 9.3 96 6-137 11-107 (107)
241 1igy_B IGG1 intact antibody MA 99.7 1.1E-17 3.7E-22 133.3 2.7 170 19-223 130-320 (434)
242 3knb_B Obscurin-like protein 1 99.7 1.5E-16 5.2E-21 101.8 7.6 88 145-237 20-107 (107)
243 2aty_A Complement receptor chi 99.7 1.2E-15 4.1E-20 119.3 14.0 180 12-222 171-361 (376)
244 4acp_A IG gamma-1 chain C regi 99.7 4.6E-16 1.6E-20 114.0 10.3 182 8-222 23-217 (240)
245 3u1s_H FAB PGT145 heavy chain; 99.7 1.9E-15 6.4E-20 112.8 13.2 178 15-222 30-253 (267)
246 1zvo_C Myeloma immunoglobulin 99.7 1.2E-14 4.2E-19 118.1 18.8 192 8-235 296-505 (512)
247 3knb_A Titin; IG-like, titin, 99.6 1E-15 3.5E-20 96.7 9.1 95 6-134 3-98 (100)
248 1ow0_A IG alpha-1 chain C regi 99.6 8.3E-17 2.8E-21 116.2 4.5 177 11-222 7-199 (214)
249 3f8u_B Tapasin; endoplasmic re 99.6 8.4E-15 2.9E-19 113.3 15.8 133 98-232 252-399 (401)
250 2kkq_A Myotilin; unknown funct 99.6 1E-14 3.5E-19 94.8 11.6 100 6-139 13-113 (116)
251 3m45_A Cell adhesion molecule 99.6 2.5E-14 8.7E-19 91.6 13.1 104 7-137 5-108 (108)
252 3knb_A Titin; IG-like, titin, 99.6 2.3E-15 7.7E-20 95.1 7.4 85 145-234 12-98 (100)
253 3bn3_B ICAM-5, intercellular a 99.6 1.9E-13 6.5E-18 96.1 16.6 179 11-236 5-195 (196)
254 2nzi_A Titin; IG-domain, FNIII 99.6 2.4E-14 8.3E-19 108.6 12.8 155 14-224 110-280 (305)
255 2yuz_A Myosin-binding protein 99.6 3.5E-14 1.2E-18 89.6 11.2 94 6-138 5-98 (100)
256 2eo9_A Roundabout homolog 1; b 99.6 2.3E-14 7.9E-19 93.4 10.4 110 6-153 6-116 (118)
257 2cqv_A MLCK, myosin light chai 99.6 7.1E-14 2.4E-18 90.5 12.5 98 7-140 6-104 (114)
258 3rbg_A Cytotoxic and regulator 99.6 4.8E-14 1.7E-18 92.7 11.8 109 11-146 4-112 (124)
259 1waa_A Titin; metal binding pr 99.6 6.2E-14 2.1E-18 87.2 11.5 90 6-135 3-92 (93)
260 1g1c_A Immunoglobulin-like dom 99.6 3.6E-14 1.2E-18 89.4 10.7 93 7-134 4-97 (99)
261 2edj_A Roundabout homolog 2; K 99.6 1.6E-14 5.5E-19 91.2 8.9 86 145-237 15-100 (100)
262 1iam_A ICAM-1, CD54, intercell 99.6 7.4E-13 2.5E-17 92.3 17.7 159 12-222 3-166 (185)
263 2dm2_A Palladin; beta-sandwich 99.6 5.1E-14 1.7E-18 90.5 10.9 99 6-138 6-105 (110)
264 3kvq_A Vascular endothelial gr 99.5 1.3E-14 4.3E-19 93.1 7.1 98 131-237 5-102 (108)
265 2kkq_A Myotilin; unknown funct 99.5 7.3E-14 2.5E-18 90.7 10.6 94 136-237 15-111 (116)
266 1wwb_X Protein (brain derived 99.5 9.3E-15 3.2E-19 92.9 6.2 84 151-238 14-101 (103)
267 2kdg_A Myotilin; immonoglobuli 99.5 6.4E-14 2.2E-18 88.4 9.9 94 7-135 4-98 (100)
268 2cr6_A KIAA1556 protein, obscu 99.5 2.8E-14 9.6E-19 92.5 8.3 102 2-141 7-108 (115)
269 1mq8_A ICAM-1, intercellular a 99.5 3.2E-13 1.1E-17 101.4 14.3 173 13-237 4-188 (291)
270 3cx2_A Myosin-binding protein 99.5 1.8E-13 6.2E-18 87.6 11.1 97 6-134 2-107 (108)
271 2cqv_A MLCK, myosin light chai 99.5 7E-14 2.4E-18 90.5 9.2 86 145-237 14-101 (114)
272 2dm3_A KIAA0992 protein, palla 99.5 6.2E-14 2.1E-18 90.1 8.8 99 6-139 7-106 (110)
273 2eys_A NKT15; natural killer T 99.5 2E-13 6.9E-18 97.9 12.3 168 10-222 5-188 (210)
274 2e7c_A Myosin-binding protein 99.5 8.1E-14 2.8E-18 90.8 9.3 87 145-237 31-117 (118)
275 2edj_A Roundabout homolog 2; K 99.5 1E-13 3.5E-18 87.5 9.4 93 6-136 6-99 (100)
276 2kdg_A Myotilin; immonoglobuli 99.5 8.8E-14 3E-18 87.8 9.1 87 145-237 12-100 (100)
277 1z9m_A GAPA225; nectin-like, I 99.5 4.6E-13 1.6E-17 90.4 13.1 104 9-139 39-142 (145)
278 2dav_A SLOW MYBP-C, myosin-bin 99.5 6.9E-14 2.3E-18 91.2 8.5 92 141-235 10-111 (126)
279 1wit_A Twitchin 18TH IGSF modu 99.5 2E-14 7E-19 89.5 5.7 84 145-234 9-93 (93)
280 3qp3_A Titin; I-SET IG-like, s 99.5 2.1E-13 7.1E-18 86.5 10.5 93 7-135 7-100 (103)
281 3irg_B Obscurin-like protein 1 99.5 9E-14 3.1E-18 88.9 8.9 85 145-237 20-107 (107)
282 2eny_A Obscurin; beta-sandwich 99.5 9.5E-14 3.2E-18 88.3 8.9 98 3-138 3-100 (104)
283 1u2h_A APEG-1, aortic preferen 99.5 1.9E-13 6.5E-18 86.0 10.1 94 6-134 3-97 (99)
284 1fhg_A Telokin; immunoglobulin 99.5 2.2E-13 7.4E-18 93.1 11.1 99 7-140 40-139 (154)
285 1wit_A Twitchin 18TH IGSF modu 99.5 1.7E-13 5.7E-18 85.3 9.6 79 8-124 2-82 (93)
286 3cx2_A Myosin-binding protein 99.5 2.2E-13 7.6E-18 87.2 10.2 88 143-234 9-107 (108)
287 2jll_A NCAM2, neural cell adhe 99.5 6.4E-13 2.2E-17 104.1 14.8 173 7-224 99-278 (389)
288 2edf_A Obscurin; beta-sandwich 99.5 2.4E-13 8.2E-18 86.3 10.1 96 4-139 4-99 (103)
289 3irg_B Obscurin-like protein 1 99.5 1.6E-13 5.4E-18 87.7 9.3 97 5-137 10-107 (107)
290 2edh_A Obscurin; structural ge 99.5 4.8E-13 1.6E-17 86.4 11.6 97 2-139 13-109 (113)
291 2eo9_A Roundabout homolog 1; b 99.5 7.9E-14 2.7E-18 90.8 7.6 86 145-237 15-100 (118)
292 3shs_A HOC head outer capsid p 99.5 2.4E-12 8.2E-17 93.3 15.7 163 12-234 6-182 (304)
293 1mq8_A ICAM-1, intercellular a 99.5 4.5E-14 1.5E-18 106.0 7.1 169 18-235 96-282 (291)
294 3qp3_A Titin; I-SET IG-like, s 99.5 1.2E-13 4.2E-18 87.6 8.0 85 146-237 16-102 (103)
295 2edk_A Myosin-binding protein 99.5 1.1E-13 3.7E-18 87.6 7.6 99 3-137 3-101 (101)
296 2edn_A Myosin-binding protein 99.5 2.3E-13 7.7E-18 87.7 9.1 103 4-135 8-116 (118)
297 1he7_A High affinity nerve gro 99.5 1E-13 3.6E-18 90.2 7.6 82 152-237 14-101 (126)
298 2dav_A SLOW MYBP-C, myosin-bin 99.5 1.3E-12 4.4E-17 85.2 12.7 99 8-135 7-111 (126)
299 3m45_A Cell adhesion molecule 99.5 2.6E-13 9E-18 86.7 9.3 91 145-237 13-108 (108)
300 3kvq_A Vascular endothelial gr 99.5 2.2E-13 7.7E-18 87.1 8.8 94 7-138 9-103 (108)
301 3puc_A Titin; I-SET IG-like do 99.5 5.8E-13 2E-17 83.8 10.6 93 6-134 4-97 (99)
302 2bnu_A TCR alpha chain, T-cell 99.5 6.9E-13 2.4E-17 94.7 12.1 129 11-170 3-147 (203)
303 1g1c_A Immunoglobulin-like dom 99.5 2.9E-13 9.9E-18 85.2 9.1 85 145-235 12-98 (99)
304 3bfo_A Mucosa-associated lymph 99.5 1.1E-13 3.7E-18 85.8 6.8 78 146-236 11-88 (91)
305 2v5y_A Receptor-type tyrosine- 99.5 1.3E-12 4.6E-17 110.5 15.7 154 59-237 101-262 (731)
306 1u2h_A APEG-1, aortic preferen 99.5 3.2E-13 1.1E-17 85.0 9.1 83 146-235 13-98 (99)
307 2edn_A Myosin-binding protein 99.5 1E-13 3.4E-18 89.4 6.7 91 143-236 17-117 (118)
308 1gl4_B Basement membrane-speci 99.5 2.7E-13 9.2E-18 85.2 8.3 80 145-234 17-97 (98)
309 1x44_A Myosin-binding protein 99.5 7.5E-13 2.6E-17 84.0 10.4 91 8-138 7-99 (103)
310 2lu7_A Obscurin-like protein 1 99.5 4.7E-13 1.6E-17 81.4 9.0 82 14-135 2-83 (84)
311 3rgv_A YAE62 TCR A chain; TCR, 99.5 6.8E-13 2.3E-17 93.8 11.0 172 11-219 3-186 (200)
312 2lvc_A Obscurin-like protein 1 99.5 5.4E-13 1.8E-17 82.4 9.1 78 7-121 3-82 (91)
313 1wwc_A Protein (NT-3 growth fa 99.5 2.1E-13 7.1E-18 88.8 7.5 98 130-238 2-104 (118)
314 2yuz_A Myosin-binding protein 99.5 4.3E-13 1.5E-17 84.5 8.7 84 144-238 13-98 (100)
315 1gxe_A Myosin binding protein 99.5 1.2E-13 4.1E-18 92.3 6.4 85 145-234 25-138 (139)
316 4f9p_D 103.2 anti-BTN3A1 antib 99.5 1.3E-11 4.5E-16 88.0 17.0 179 18-220 10-229 (254)
317 3c6l_A TCR 2W20 alpha chain; T 99.2 6.1E-15 2.1E-19 103.3 0.0 134 11-178 3-149 (185)
318 2ak4_D SB27 T cell receptor al 99.5 4E-13 1.4E-17 96.5 9.4 177 10-222 5-197 (211)
319 2ckn_A Basic fibroblast growth 99.5 6E-13 2E-17 83.1 9.1 78 5-123 6-83 (95)
320 2yr3_A Myosin light chain kina 99.4 1.4E-13 4.6E-18 86.8 6.1 82 145-234 18-99 (99)
321 3irg_A Titin; IG-like, titin, 99.4 6.4E-13 2.2E-17 83.7 9.2 94 6-133 3-97 (100)
322 2e6p_A Obscurin-like protein 1 99.4 9.5E-13 3.3E-17 83.6 10.0 93 7-139 6-101 (104)
323 2bk8_A Connectin, M1, titin he 99.4 8.6E-13 3E-17 82.7 9.7 83 145-234 8-93 (97)
324 2dlt_A Myosin binding protein 99.4 7.5E-13 2.6E-17 84.4 9.5 92 5-134 5-96 (106)
325 2ckn_A Basic fibroblast growth 99.4 3.7E-13 1.3E-17 84.1 7.9 79 145-233 16-94 (95)
326 2c1o_A IGK-C protein; FAB frag 99.4 2E-13 7E-18 100.8 7.8 124 107-234 11-149 (254)
327 1nct_A Titin; cell adhesion, g 99.4 2.8E-13 9.7E-18 86.4 7.0 92 6-133 12-104 (106)
328 4f9l_D 20.1 anti-BTN3A1 antibo 99.4 7.6E-12 2.6E-16 89.7 14.9 181 10-218 3-230 (259)
329 2yuv_A Myosin-binding protein 99.4 1.6E-12 5.4E-17 82.0 10.3 91 7-137 6-97 (100)
330 2dm2_A Palladin; beta-sandwich 99.4 4.6E-13 1.6E-17 86.0 7.9 87 145-237 15-104 (110)
331 2e7c_A Myosin-binding protein 99.4 2.2E-12 7.4E-17 83.9 11.1 94 7-137 20-117 (118)
332 3s35_X Vascular endothelial gr 99.4 5.5E-13 1.9E-17 87.3 8.2 90 148-238 18-113 (122)
333 2e7b_A Obscurin; IG-like domai 99.4 2.4E-12 8E-17 81.6 10.9 94 5-138 5-98 (103)
334 2nw2_A ELS4 TCR alpha chain; T 99.4 3.6E-12 1.2E-16 90.7 13.0 165 12-222 4-182 (200)
335 2dku_A KIAA1556 protein; beta- 99.4 3.1E-12 1.1E-16 81.1 11.4 94 6-139 6-99 (103)
336 3irg_A Titin; IG-like, titin, 99.4 8.3E-13 2.8E-17 83.1 8.6 84 145-234 12-98 (100)
337 1fhg_A Telokin; immunoglobulin 99.4 2.2E-13 7.7E-18 93.0 6.3 85 146-237 49-136 (154)
338 3puc_A Titin; I-SET IG-like do 99.4 1.2E-12 4E-17 82.3 9.1 83 145-234 13-97 (99)
339 3caf_A Fibroblast growth facto 99.4 6.5E-13 2.2E-17 83.7 7.6 84 146-233 16-99 (100)
340 3rbg_A Cytotoxic and regulator 99.4 9.4E-13 3.2E-17 86.5 8.6 91 145-237 8-103 (124)
341 2cry_A KIN of IRRE-like protei 99.4 5.6E-15 1.9E-19 96.9 -2.2 105 126-237 4-115 (122)
342 3gsn_A RA14 TCR alpha chain (T 99.4 2E-13 6.9E-18 96.5 5.6 172 11-220 3-187 (199)
343 2dm7_A KIAA1556 protein; beta- 99.4 4E-12 1.4E-16 81.3 11.2 94 4-138 4-97 (108)
344 2dm3_A KIAA0992 protein, palla 99.4 9.5E-14 3.2E-18 89.2 3.5 87 145-237 16-104 (110)
345 3tjh_C 42F3 alpha; IG MHC, ant 99.4 3.7E-12 1.3E-16 91.5 12.1 137 10-177 11-163 (226)
346 2bk8_A Connectin, M1, titin he 99.4 6.6E-12 2.3E-16 78.6 11.7 89 10-133 3-92 (97)
347 2lu7_A Obscurin-like protein 1 99.4 3.9E-13 1.4E-17 81.7 5.8 79 146-236 4-84 (84)
348 2xot_A Amphoterin-induced prot 99.4 1E-12 3.6E-17 102.1 9.6 108 14-171 252-360 (361)
349 2v9t_A Roundabout homolog 1; s 99.4 4E-13 1.4E-17 87.3 6.1 90 145-236 16-110 (117)
350 2yr3_A Myosin light chain kina 99.4 3.5E-13 1.2E-17 84.8 5.5 81 5-124 8-88 (99)
351 1kgc_D T-cell receptor alpha c 99.4 4.8E-12 1.6E-16 90.5 11.9 129 11-170 3-146 (206)
352 1nct_A Titin; cell adhesion, g 99.4 1.5E-13 5.3E-18 87.6 3.5 83 145-234 21-105 (106)
353 3bfo_A Mucosa-associated lymph 99.4 1.6E-12 5.6E-17 80.4 8.1 73 7-124 2-74 (91)
354 2k1m_A Myosin-binding protein 99.4 8.4E-12 2.9E-16 77.8 11.5 89 6-134 6-94 (95)
355 2cpc_A KIAA0657 protein; immun 99.4 6.1E-12 2.1E-16 81.1 11.2 84 18-141 23-106 (113)
356 3mbe_C I-AG7; T cell receptor, 99.4 1.6E-12 5.6E-17 93.6 9.1 134 11-177 4-151 (229)
357 2lvc_A Obscurin-like protein 1 99.4 7.7E-13 2.6E-17 81.7 6.4 66 148-220 16-83 (91)
358 2cr3_A Basic fibroblast growth 99.4 3.1E-13 1E-17 85.1 4.6 83 145-237 10-92 (99)
359 4hwu_A Fibroblast growth facto 99.4 1.3E-12 4.6E-17 81.5 7.4 82 145-237 8-89 (95)
360 1zxq_A ICAM-2, intercellular a 99.4 8.8E-11 3E-15 81.8 17.1 163 11-221 5-172 (192)
361 2e6q_A Obscurin-like protein 1 99.4 6.8E-12 2.3E-16 80.3 10.6 102 6-138 6-108 (112)
362 3so5_A LIG-3, leucine-rich rep 99.4 7.7E-12 2.6E-16 80.2 10.5 99 6-133 8-111 (112)
363 3s35_X Vascular endothelial gr 99.4 1.3E-11 4.3E-16 80.7 11.6 101 13-141 13-116 (122)
364 2ens_A Advanced glycosylation 99.4 5.5E-13 1.9E-17 83.4 4.6 78 145-235 17-95 (96)
365 1x44_A Myosin-binding protein 99.4 3.8E-12 1.3E-16 80.7 8.4 84 144-237 13-98 (103)
366 1pd6_A Cardiac MYBP-C;, myosin 99.4 1.3E-11 4.4E-16 78.3 10.9 79 6-120 13-92 (104)
367 4ei6_A Valpha1 XV19 type II na 99.4 6.9E-12 2.4E-16 89.1 10.2 137 10-177 4-155 (208)
368 3caf_A Fibroblast growth facto 99.3 8.2E-13 2.8E-17 83.3 4.7 83 7-124 3-89 (100)
369 2edh_A Obscurin; structural ge 99.3 5.3E-12 1.8E-16 81.4 8.1 97 126-238 8-108 (113)
370 1gl4_B Basement membrane-speci 99.3 1.6E-11 5.5E-16 77.0 10.1 86 8-133 9-96 (98)
371 1gxe_A Myosin binding protein 99.3 5.3E-12 1.8E-16 84.3 7.8 83 15-124 25-127 (139)
372 1oga_D T-cell receptor alpha c 99.3 3.6E-11 1.2E-15 86.4 12.7 128 11-170 4-144 (215)
373 1jhl_L IGG1-kappa D11.15 FV (l 99.3 2.3E-11 8E-16 77.7 10.6 86 10-122 3-93 (108)
374 2va4_A NCAM2, N-CAM 2, neural 99.3 5E-12 1.7E-16 89.1 8.0 95 136-237 2-96 (192)
375 4hwu_A Fibroblast growth facto 99.3 1.4E-11 4.6E-16 76.8 9.1 82 12-135 5-87 (95)
376 2q86_A Valpha14 TCR; INKT cell 99.3 2.5E-11 8.6E-16 88.1 11.7 133 11-174 4-148 (229)
377 3so5_A LIG-3, leucine-rich rep 99.3 5.5E-12 1.9E-16 80.9 7.4 89 145-234 17-112 (112)
378 1waa_A Titin; metal binding pr 99.3 1.5E-11 5.1E-16 76.3 9.1 79 145-235 12-92 (93)
379 2e6p_A Obscurin-like protein 1 99.3 5.8E-12 2E-16 79.9 7.1 78 148-237 20-99 (104)
380 3q0h_A T cell immunoreceptor w 99.3 7.1E-12 2.4E-16 81.3 7.4 101 12-140 7-113 (117)
381 2cr6_A KIAA1556 protein, obscu 99.3 1.4E-12 4.9E-17 84.4 4.1 100 129-237 5-104 (115)
382 2edf_A Obscurin; beta-sandwich 99.3 6.1E-12 2.1E-16 79.7 6.8 81 145-237 15-97 (103)
383 1pko_A Myelin oligodendrocyte 99.3 1.1E-10 3.6E-15 78.2 13.0 103 11-136 9-122 (139)
384 1z9m_A GAPA225; nectin-like, I 99.3 2.4E-11 8.1E-16 82.0 9.6 92 144-237 44-140 (145)
385 2ens_A Advanced glycosylation 99.3 3.7E-12 1.3E-16 79.6 5.2 72 6-122 8-79 (96)
386 1wwb_X Protein (brain derived 99.3 2.2E-11 7.7E-16 77.1 8.9 82 21-137 14-100 (103)
387 1xau_A B- and T-lymphocyte att 99.3 1.8E-11 6.1E-16 75.5 7.8 91 145-235 21-116 (122)
388 2v9t_A Roundabout homolog 1; s 99.3 3.2E-12 1.1E-16 82.9 4.9 103 2-135 3-109 (117)
389 4gos_A V-SET domain-containing 99.3 2.1E-11 7.3E-16 80.0 8.8 91 9-122 6-106 (125)
390 1zox_A CLM-1; IG-superfamily, 99.3 8.9E-11 3E-15 75.6 11.6 98 13-135 6-110 (113)
391 2edk_A Myosin-binding protein 99.3 2.1E-12 7.2E-17 81.6 3.8 85 145-237 15-101 (101)
392 1he7_A High affinity nerve gro 99.3 5.1E-11 1.8E-15 77.5 10.0 83 21-138 13-102 (126)
393 2yuv_A Myosin-binding protein 99.3 4.1E-11 1.4E-15 75.4 9.3 79 148-238 18-98 (100)
394 2q20_A VK1 O18/O8 germline lig 99.3 3.3E-11 1.1E-15 77.1 9.0 88 8-122 3-95 (109)
395 1mqk_L Antibody 7E2 FV fragmen 99.3 6.1E-11 2.1E-15 77.2 10.4 87 10-123 3-94 (120)
396 2cr3_A Basic fibroblast growth 99.3 1.2E-11 4.2E-16 77.7 6.8 72 11-123 6-77 (99)
397 1ymm_D T cell receptor alpha c 99.3 2.3E-13 7.9E-18 97.4 -1.4 174 11-222 4-192 (207)
398 4gjt_B Poliovirus receptor-rel 99.3 2.6E-11 9E-16 79.4 8.5 99 13-134 5-116 (123)
399 2eo1_A OBSCN protein, cDNA FLJ 99.3 4.1E-11 1.4E-15 75.7 9.1 91 7-137 7-100 (102)
400 3u6r_L Antibody 1:7 (light cha 99.3 4.1E-11 1.4E-15 80.3 9.5 86 10-122 2-92 (143)
401 2cpc_A KIAA0657 protein; immun 99.3 3.6E-11 1.2E-15 77.4 9.0 78 148-237 23-102 (113)
402 2eny_A Obscurin; beta-sandwich 99.3 6.4E-12 2.2E-16 79.8 5.3 84 144-238 14-100 (104)
403 2r15_A Myomesin-1; sarcomeric 99.3 1.3E-10 4.5E-15 83.1 12.7 88 13-135 122-210 (212)
404 1ntl_A CRRY-IG; immunology, co 99.3 2.2E-10 7.5E-15 93.9 15.4 181 11-222 345-536 (551)
405 3qr2_A Basigin; CD147, EMMPRIN 99.3 1.4E-11 4.8E-16 82.3 7.0 93 5-123 18-113 (137)
406 2e27_L Anti-ciguatoxin antibod 99.3 4.6E-11 1.6E-15 77.7 9.2 87 9-122 4-95 (119)
407 1hkf_A NKP44, NK cell activati 99.2 1.3E-10 4.4E-15 75.8 11.2 90 10-123 12-107 (122)
408 2or8_A Hepatitis A virus cellu 99.2 3.4E-11 1.1E-15 77.9 8.3 100 13-137 2-111 (116)
409 1lp9_E T-cell receptor alpha c 99.2 4.2E-11 1.4E-15 84.8 9.5 130 11-171 4-149 (194)
410 3rrq_A Protein PD-1, programme 99.2 1.3E-10 4.4E-15 76.6 11.2 102 11-137 4-117 (129)
411 1rhf_A Tyrosine-protein kinase 99.2 2.6E-11 8.8E-16 84.8 8.2 87 145-237 9-99 (182)
412 2q87_A CMRF35-H antigen; all-b 99.2 4.8E-11 1.6E-15 76.5 8.8 99 14-137 2-108 (110)
413 3mtr_A N-CAM-1, NCAM-1, neural 99.2 2.9E-11 1E-15 86.9 8.4 87 145-237 25-114 (215)
414 2j8h_A Titin, connectin; cardi 99.2 5.2E-11 1.8E-15 84.2 9.5 88 145-237 11-100 (197)
415 3qr2_A Basigin; CD147, EMMPRIN 99.2 1.3E-11 4.5E-16 82.4 6.0 88 135-224 20-116 (137)
416 1i8k_A Epidermal growth factor 99.2 6.2E-11 2.1E-15 75.6 8.5 86 10-122 3-93 (107)
417 3bp6_A Programmed cell death p 99.2 4.7E-10 1.6E-14 72.6 12.8 87 11-122 2-95 (117)
418 2iep_A Muscle-specific kinase 99.2 5.1E-11 1.8E-15 83.9 8.9 88 145-237 14-101 (192)
419 4ffy_L DENV1-E111 single chain 99.2 1E-10 3.5E-15 76.9 9.6 91 9-122 2-97 (126)
420 2yc1_B Single chain antibody f 99.2 1.2E-10 4.2E-15 78.3 10.1 101 8-135 16-123 (146)
421 2e7b_A Obscurin; IG-like domai 99.2 5.7E-11 2E-15 75.1 8.1 80 145-237 15-97 (103)
422 1vca_A VCAM-D1,2, human vascul 99.2 3E-11 1E-15 86.2 7.4 82 148-237 11-92 (202)
423 1i3g_L Antibody FV fragment; a 99.2 6.8E-11 2.3E-15 75.9 8.4 88 8-122 4-96 (111)
424 2e6q_A Obscurin-like protein 1 99.2 1E-10 3.5E-15 74.8 9.0 95 137-238 7-108 (112)
425 2frg_P TREM-like transcript-1; 99.2 2.3E-10 8E-15 72.6 10.6 85 14-123 3-91 (106)
426 2dlt_A Myosin binding protein 99.2 3.7E-11 1.3E-15 76.5 6.9 80 145-234 15-96 (106)
427 3khq_A B-cell antigen receptor 99.2 2E-10 6.8E-15 76.1 10.6 99 9-139 18-121 (133)
428 1qfw_M FV, antibody (anti beta 99.2 3.8E-11 1.3E-15 76.7 6.8 86 10-122 3-93 (108)
429 1h5b_A Murine T cell receptor 99.2 2.4E-10 8.3E-15 73.5 10.5 84 11-122 4-93 (113)
430 2dku_A KIAA1556 protein; beta- 99.2 2.8E-10 9.5E-15 71.9 10.7 80 145-237 15-97 (103)
431 2v44_A NCAM2, neural cell adhe 99.2 1E-10 3.5E-15 82.2 9.4 86 145-237 9-97 (189)
432 2k1m_A Myosin-binding protein 99.2 9.2E-11 3.2E-15 73.0 8.1 78 145-234 15-94 (95)
433 3lcy_A Titin; A-BAND, IG tande 99.2 1.9E-10 6.3E-15 81.2 10.7 86 145-237 14-101 (197)
434 3qjh_A 5C.C7 alpha chain; immu 99.2 5.8E-10 2E-14 79.1 12.7 125 10-167 5-141 (205)
435 2ywz_A NEW antigen receptor va 99.2 2.3E-10 8E-15 73.4 9.7 85 10-121 2-87 (111)
436 1neu_A Myelin P0 protein; stru 99.2 2.5E-10 8.6E-15 74.6 10.1 103 13-137 4-121 (124)
437 3bik_B Programmed cell death p 99.2 1.2E-09 4.1E-14 72.5 13.4 101 10-135 11-123 (134)
438 3moq_A NEW antigen receptor va 99.2 2.6E-10 9.1E-15 74.6 10.0 85 10-121 2-87 (126)
439 2c5d_C AXL oncogene, tyrosine- 99.2 7.2E-11 2.4E-15 83.5 7.8 92 145-237 9-107 (195)
440 3udw_C Poliovirus receptor; PV 99.2 1.8E-10 6.3E-15 74.5 9.0 102 14-137 6-118 (118)
441 2cry_A KIN of IRRE-like protei 99.2 1.2E-11 3.9E-16 80.9 3.2 84 7-124 13-101 (122)
442 2nms_A CMRF35-like-molecule 1; 99.2 7.1E-10 2.4E-14 72.5 11.7 100 13-137 7-113 (124)
443 3t0v_A Immunoglobulin variable 99.2 3.4E-10 1.2E-14 73.9 10.0 88 9-122 2-94 (123)
444 2eo1_A OBSCN protein, cDNA FLJ 99.2 5.4E-11 1.9E-15 75.1 6.0 81 146-238 19-101 (102)
445 1fo0_A Protein (BM3.3 T cell r 99.2 4E-10 1.4E-14 72.9 10.3 86 11-121 3-95 (116)
446 1j05_L T84.66 antibody, anti-C 99.2 1.3E-10 4.5E-15 74.5 7.9 90 10-122 3-97 (111)
447 1eaj_A Coxsackie virus and ade 99.2 1.7E-10 5.7E-15 75.5 8.5 105 9-135 6-125 (126)
448 2d9c_A Signal-regulatory prote 99.2 2.8E-10 9.5E-15 75.8 9.7 106 8-138 8-124 (136)
449 3rbs_A Myomesin-1; immunoglobu 99.2 1.3E-10 4.5E-15 83.1 8.5 78 8-124 117-195 (207)
450 1eeq_A Kappa-4 immunoglobulin 99.2 1.8E-10 6.2E-15 74.3 8.3 92 10-122 3-99 (114)
451 2oi9_C V beta, T cell receptor 99.2 9.1E-10 3.1E-14 71.7 11.7 86 10-122 3-96 (121)
452 1tvd_A T cell receptor, ES204 99.2 4.7E-10 1.6E-14 72.5 10.2 86 11-121 3-97 (116)
453 3dmm_C T-cell surface glycopro 99.2 4.1E-10 1.4E-14 77.0 10.3 89 8-122 9-112 (166)
454 1sq2_N Novel antigen receptor; 99.2 3E-10 1E-14 73.1 9.2 84 11-121 3-87 (113)
455 1epf_A NCAM, protein (neural c 99.1 3E-10 1E-14 79.9 10.0 88 145-237 9-101 (191)
456 2qhl_A Novel immune-type recep 99.1 3.8E-10 1.3E-14 72.4 9.6 84 12-122 3-98 (111)
457 2coq_A NEW antigen receptor va 99.1 3.2E-10 1.1E-14 72.3 9.2 85 10-121 2-87 (108)
458 2x1w_L Vascular endothelial gr 99.1 7.6E-10 2.6E-14 79.4 12.2 102 8-139 104-211 (213)
459 3q0h_A T cell immunoreceptor w 99.1 2.5E-10 8.7E-15 73.9 8.8 91 146-238 11-111 (117)
460 2oyp_A Hepatitis A virus cellu 99.1 2.9E-10 9.8E-15 72.5 8.8 97 16-135 2-108 (109)
461 2v5y_A Receptor-type tyrosine- 99.1 7.4E-09 2.5E-13 87.7 19.8 168 7-224 164-344 (731)
462 2wv3_A Neuroplastin; igcam, me 99.1 1E-09 3.5E-14 77.2 12.4 94 8-134 92-189 (190)
463 4fa8_A Secreted protein BARF1; 99.1 9.4E-11 3.2E-15 83.6 7.1 89 148-237 3-107 (203)
464 2yd1_A Tyrosine-protein phosph 99.1 3E-10 1E-14 81.4 9.7 88 145-236 13-103 (212)
465 3bp6_B Programmed cell death 1 99.1 8.9E-11 3E-15 83.5 6.9 89 147-236 11-104 (202)
466 2or7_A T-cell immunoglobulin a 99.1 1.8E-10 6.1E-15 74.4 7.6 97 14-135 3-108 (115)
467 1dlf_L Anti-dansyl immunoglobu 99.1 3.5E-10 1.2E-14 72.8 9.0 91 10-122 3-98 (113)
468 2v5t_A NCAM2, N-CAM 2, neural 99.1 1.2E-10 4.2E-15 81.7 7.5 88 145-237 9-97 (189)
469 1nko_A Sialic acid binding IG- 99.1 4.3E-10 1.5E-14 74.5 9.6 93 12-123 10-111 (132)
470 2yd6_A PTPRD protein; hydrolas 99.1 6.1E-10 2.1E-14 79.8 11.1 98 8-138 108-207 (212)
471 2yz1_A Tyrosine-protein phosph 99.1 2.7E-10 9.2E-15 74.1 8.4 88 8-122 7-100 (120)
472 2v9r_A Roundabout homolog 1; p 99.1 2E-10 6.9E-15 82.1 8.4 96 7-140 110-207 (212)
473 3zyj_A Leucine-rich repeat-con 99.1 1.3E-10 4.5E-15 92.7 8.1 88 145-237 348-435 (440)
474 2i24_N NEW antigen receptor PB 99.1 6.9E-10 2.4E-14 72.2 10.1 84 11-121 3-87 (121)
475 2a38_A Titin; Z1Z2, structural 99.1 2.1E-10 7E-15 80.9 8.2 87 145-234 12-98 (194)
476 2hp4_A T-cell surface glycopro 99.1 4.6E-10 1.6E-14 72.3 8.9 86 11-122 3-99 (114)
477 2ptt_A CD48 antigen; CD244, CD 99.1 4.5E-10 1.5E-14 71.9 8.9 93 14-134 9-107 (110)
478 2z35_A T-cell receptor alpha-c 99.1 5E-10 1.7E-14 71.9 9.1 84 11-120 3-92 (112)
479 1fo0_B Protein (BM3.3 T cell r 99.1 5.6E-10 1.9E-14 71.7 9.2 85 10-122 3-96 (112)
480 2jju_A Signal regulatory prote 99.1 4.3E-10 1.5E-14 74.0 8.7 86 10-122 5-96 (127)
481 1xt5_A Variable region-contain 99.1 1.3E-09 4.4E-14 72.4 11.2 88 10-122 6-114 (135)
482 2qsq_A Carcinoembryonic antige 99.1 5E-10 1.7E-14 71.6 8.5 88 149-236 11-110 (111)
483 3k0w_A Mucosa-associated lymph 99.1 1.9E-10 6.3E-15 82.9 7.3 79 145-236 25-103 (218)
484 1f97_A Junction adhesion molec 99.1 3.3E-10 1.1E-14 80.9 8.5 92 145-237 8-105 (212)
485 3bia_X T-cell immunoglobulin a 99.1 7.3E-10 2.5E-14 71.6 9.3 86 14-123 2-96 (116)
486 3r8b_B G5-8, enterotoxin type 99.1 1.4E-09 4.7E-14 71.3 10.7 88 8-121 5-100 (125)
487 1gsm_A Madcam-1, mucosal addre 99.1 4.4E-10 1.5E-14 80.0 8.8 79 148-237 17-97 (210)
488 1pew_A JTO2, A lambda-6 type i 99.1 4.3E-10 1.5E-14 71.9 8.0 86 11-122 4-94 (109)
489 1nez_G T-cell surface glycopro 99.1 1.4E-09 4.7E-14 71.5 10.6 87 8-121 4-106 (128)
490 3p2t_A Leukocyte immunoglobuli 99.1 2.5E-10 8.4E-15 80.9 7.5 81 149-235 15-96 (196)
491 1pd6_A Cardiac MYBP-C;, myosin 99.1 6.5E-10 2.2E-14 70.3 8.5 75 148-234 26-103 (104)
492 1xau_A B- and T-lymphocyte att 99.1 1.9E-09 6.5E-14 66.5 9.9 92 15-134 21-115 (122)
493 2p1y_A Bispecific alpha/beta T 99.1 7.3E-10 2.5E-14 80.8 9.8 87 10-122 129-221 (238)
494 1pko_A Myelin oligodendrocyte 99.1 1.1E-09 3.8E-14 73.1 9.9 90 147-237 15-123 (139)
495 1oaq_L Light chain; antibody, 99.1 5.5E-10 1.9E-14 72.6 8.1 87 11-122 4-95 (120)
496 2otu_A FV light chain variable 99.1 1.3E-09 4.5E-14 70.3 9.8 85 11-122 5-98 (115)
497 2xot_A Amphoterin-induced prot 99.1 2.3E-10 7.9E-15 88.9 7.2 86 145-236 253-338 (361)
498 1wwc_A Protein (NT-3 growth fa 99.1 6.2E-10 2.1E-14 72.2 8.2 71 60-137 31-103 (118)
499 3ojm_B Fibroblast growth facto 99.1 3.6E-10 1.2E-14 81.8 7.8 86 146-235 27-112 (231)
500 3bj9_1 Immunoglobulin IOTA cha 99.1 7E-09 2.4E-13 66.9 13.1 85 15-122 5-99 (116)
No 1
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.96 E-value=2.2e-27 Score=171.69 Aligned_cols=192 Identities=23% Similarity=0.339 Sum_probs=135.4
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
..+|.|...+..+.+.+|+++.|.|.+.+ .|.+.+.|++++..+..
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~g--------------------------~p~~~v~W~k~~~~~~~-------- 49 (212)
T 2yd6_A 4 ETPPRFTRTPVDQTGVSGGVASFICQATG--------------------------DPRPKIVWNKKGKKVSN-------- 49 (212)
T ss_dssp CEEEEEEECCCCEEEETTSCEEEEEEEEE--------------------------ESCCEEEEEETTEECCC--------
T ss_pred CCCCeEEeCcceeEEecCCeEEEEEEEee--------------------------CCCCEEEEEECCcCCCC--------
Confidence 46899999999999999999999999863 23567999998765431
Q ss_pred cCccEEE-EEcCCCeEEEEEccc-CcccCeEEEEEEecCCC-cceeeEEEEEcCCc-----ccccccCCceeecCCCcEE
Q psy7941 86 NNARLSV-THNDANTWTLNIRSV-RREDRGYYMCQVNTNPM-TKQMAFLEVVIPPD-----ISSEETSGDMMVPEGGSAK 157 (238)
Q Consensus 86 ~~~~~~~-~~~~~~~~~L~i~~~-~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~-----~~~~~~~~~~~~~~g~~~~ 157 (238)
.+... .........|.|.++ +.+|+|.|+|.+.+... ....+.|.|...+. +.+...+....+..|+.+.
T Consensus 50 --~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~ 127 (212)
T 2yd6_A 50 --QRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTAT 127 (212)
T ss_dssp --TTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEEETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEE
T ss_pred --CceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEEcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEE
Confidence 12221 122223458999999 59999999999987533 34455677765321 1111223445678899999
Q ss_pred EEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEE---EeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941 158 LVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS---VESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 158 l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
|.|.+.|.|.|.+.|++ ++..+..... ...... .....|.|.++..+|.|.|+|.|.|..|...+..+.|.|.
T Consensus 128 l~C~~~g~p~p~v~W~~-~g~~l~~~~~---~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~ 203 (212)
T 2yd6_A 128 MLCAASGNPDPEITWFK-DFLPVDTSNN---NGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR 203 (212)
T ss_dssp EEEEEECSSCCEEEEEE-TTEEC---------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred EEEEecCCCCCeEEEEE-CCccccCcCC---CceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEE
Confidence 99999999999999999 5554432211 011111 1236899999999999999999999999877888889888
Q ss_pred eec
Q psy7941 235 CTY 237 (238)
Q Consensus 235 ~~p 237 (238)
.+|
T Consensus 204 ~~~ 206 (212)
T 2yd6_A 204 GTK 206 (212)
T ss_dssp C--
T ss_pred ecc
Confidence 765
No 2
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.96 E-value=6.8e-27 Score=169.09 Aligned_cols=191 Identities=22% Similarity=0.389 Sum_probs=141.5
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
..+|.|...+..+.+.+|+++.|.|.+.+ .|.+.+.|++++..+. .
T Consensus 4 ~~pP~~~~~p~~~~v~~G~~v~l~C~~~g--------------------------~p~~~v~W~~~~~~~~--------~ 49 (212)
T 2yd1_A 4 AHPPEIIRKPQNQGVRVGGVASFYCAARG--------------------------DPPPSIVWRKNGKKVS--------G 49 (212)
T ss_dssp -CCCEEEECCCCEEEETTSCEEEEEEEEC--------------------------SSCCEEEEEETTEECC--------T
T ss_pred CCCCEEEcCCCceEEecCCEEEEEEEEcc--------------------------CCCCeEEEEECCEECC--------C
Confidence 35789999999999999999999999863 3456799999876532 1
Q ss_pred cCccEEEEEcCCCeEEEEEcccCc-ccCeEEEEEEecCCC--cceeeEEEEEcCCc-----ccccccCCceeecCCCcEE
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRR-EDRGYYMCQVNTNPM--TKQMAFLEVVIPPD-----ISSEETSGDMMVPEGGSAK 157 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~~-----~~~~~~~~~~~~~~g~~~~ 157 (238)
...++.......+..+|.|.+++. +|+|.|+|.+.+... ....+.|.|...+. +.+...+....+..|+.+.
T Consensus 50 ~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~ 129 (212)
T 2yd1_A 50 TQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVL 129 (212)
T ss_dssp TSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEE
T ss_pred CcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEE
Confidence 345666655555556999999999 999999999987543 34556677775422 1111223446778899999
Q ss_pred EEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 158 LVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 158 l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
|.|.+.|.|.+.+.|++ ++..+... ... ....++.|.|.++..+|.|.|+|.|.|..|...+..+.|.|..++
T Consensus 130 l~C~~~g~p~p~i~W~~-~~~~~~~~-----~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~ 202 (212)
T 2yd1_A 130 MTCKAIGNPTPNIYWIK-NQTKVDMS-----NPR-YSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRR 202 (212)
T ss_dssp ECCEEECSSCCEEEEEE-TTEECCTT-----STT-EEEETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred EEEEeccCCCCeEEEEE-CCeEcccC-----CCe-EEccCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEecc
Confidence 99999999999999999 55444221 111 233456899999999999999999999999665556888888654
No 3
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.95 E-value=8e-27 Score=166.68 Aligned_cols=189 Identities=22% Similarity=0.318 Sum_probs=138.9
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
.+|.|...+..+.+.+|+++.|.|.+.+ .|.+.+.|++++..+.. .
T Consensus 3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~--------------------------~p~~~v~W~~~~~~~~~--------~ 48 (197)
T 2j8h_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTG--------------------------HPKPIVKWYRQGKEIIA--------D 48 (197)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEEC--------------------------SSCCEEEEEETTEECCC--------C
T ss_pred CCCEEEEcCCccEEcCCCEEEEEEEEee--------------------------cCCCEEEEEECCEECcc--------C
Confidence 5789999999999999999999999863 34567999998765431 2
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCcccccc---cCCceeecCCCcEEEEEEE
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDISSEE---TSGDMMVPEGGSAKLVCKA 162 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~---~~~~~~~~~g~~~~l~C~~ 162 (238)
..++.+.....+..+|.|.+++.+|+|.|+|.+.+.. .....+.|.|..+|.+.... ......+..|+.+.|.|.+
T Consensus 49 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~ 128 (197)
T 2j8h_A 49 GLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF 128 (197)
T ss_dssp SSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEE
T ss_pred CCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEE
Confidence 3456555555666799999999999999999997753 33455667777655543221 1234567889999999999
Q ss_pred ccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEE-eecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941 163 KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTK-VTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 163 ~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
.|.|.|.+.|++ ++..+.... ............|.|.+ +..+|.|.|+|.|.|..|. .+.++.|.|.
T Consensus 129 ~g~p~p~i~W~~-~~~~~~~~~---~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~ 196 (197)
T 2j8h_A 129 SGKPDPVITWQK-GQDLIDNNG---HYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGI-DQKTVELDVA 196 (197)
T ss_dssp EEESCCEEEEEE-SSCEECSSS---SCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred EecCCCcEEEEE-CCEEeecCC---CEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCc-EeEEEEEEEe
Confidence 999999999999 444443111 11111112345788888 9999999999999999995 4788888775
No 4
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.95 E-value=1.8e-27 Score=169.36 Aligned_cols=185 Identities=26% Similarity=0.456 Sum_probs=139.0
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
.+|.|..++..+.+.+|+++.|.|.+.+ .|.+.+.|++++..+.. .
T Consensus 6 ~~P~i~~~~~~~~~~~G~~v~l~C~~~~--------------------------~p~~~i~W~~~~~~~~~--------~ 51 (192)
T 2iep_A 6 KAPVITTPLETVDALVEEVATFMCAVES--------------------------YPQPEISWTRNKILIKL--------F 51 (192)
T ss_dssp EEEEESSCCCEEEEETTSCEEEECCEEE--------------------------ESCCEEEEEETTEECCT--------T
T ss_pred CCceeecCccceeeeCCCcEEEEeeCCC--------------------------CCCCeEEEEECCEEccc--------c
Confidence 4688888899999999999999999863 23557999998765321 2
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG 164 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~ 164 (238)
..++.+..... +|.|.+++.+|+|.|+|.+.+.... .....+.|..+|.+... +....+..|+.+.|.|.+.|
T Consensus 52 ~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~--~~~~~~~~g~~~~l~C~~~g 126 (192)
T 2iep_A 52 DTRYSIRENGQ---LLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRP--PINVKIIEGLKAVLPCTTMG 126 (192)
T ss_dssp CTTEEEEGGGT---EEEESSCCGGGCEEEEEEEECSSSCCEEEEEEEEEEEEEEEEEC--CCCEEEETTSCEEECCEEEE
T ss_pred CccEEEcCCcc---EEEEcCCCcccCeEEEEEEEcCCCceeEeEEEEEEEeCCccccC--CcceEEeCCCcEEEEEEEec
Confidence 34554443221 7999999999999999999875332 34456777776665542 33467889999999999999
Q ss_pred ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 165 YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 165 ~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
.|.+.+.|++ ++..+... ........+.|.|.++..+|.|.|+|.|.|..|...++.+.|.|..||
T Consensus 127 ~p~~~v~W~~-~~~~~~~~------~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp 192 (192)
T 2iep_A 127 NPKPSVSWIK-GDSALREN------SRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA 192 (192)
T ss_dssp ESCCEEEEEE-TTEECCCC------SSEEECTTSCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred cCCceEEEEe-CCEEccCC------CcEEEecCCcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence 9999999999 55444321 122233445799999999999999999999999766788999999887
No 5
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.95 E-value=7e-27 Score=167.56 Aligned_cols=180 Identities=18% Similarity=0.311 Sum_probs=117.4
Q ss_pred ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee----eeeEe----ecC
Q psy7941 16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI----HEHVI----TNN 87 (238)
Q Consensus 16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~----~~~~~----~~~ 87 (238)
+.+.+..|+++.|+|.+.... +.|.+.++|+|++....... ..... ...
T Consensus 1 q~Vta~~Ge~v~L~C~~~~v~-----------------------~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~ 57 (203)
T 4fa8_A 1 QAVTAFLGERVTLTSYWRRVS-----------------------LGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFR 57 (203)
T ss_dssp -CCEEETTCCEEEEEECSSTT-----------------------CSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGB
T ss_pred CCeEEEcCCCEEEEeeeeccC-----------------------CCCCcEEEEEEcCCCcceEEEEecCCceEEeecccc
Confidence 357899999999999875432 34578899999764322111 11111 112
Q ss_pred ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcccc
Q psy7941 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYP 166 (238)
Q Consensus 88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p 166 (238)
.++.... ..+.++|.|.+++.+|+|.|+|.+.+.. .....+.|.|..||.+... +....+.+|+.+.|.|.+.|.|
T Consensus 58 ~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~--~~~~~v~~g~~~~l~C~~~G~P 134 (203)
T 4fa8_A 58 GFFDIHR-SANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVH--SERSQFPDFSVLTVTCTVNAFP 134 (203)
T ss_dssp TTEEEEE-ETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEE--EEECCSSCSCCEEEEEEEEEES
T ss_pred ceEEEEE-cCCEEEEEEccCCHHHCeEEEEEEEcCCCcEEEEEEEEecCCceeeec--ceeEEEcCCCEEEEEEEcCCCC
Confidence 3343332 3456799999999999999999998753 3445566777766655432 3445678899999999999999
Q ss_pred CCeEEEEeCCCeeeEeecCCCCCcceEEEeece---EEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 167 TPKITWRREDNKEIIVRSNPPSSQKVFSVESEV---LSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 167 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
.|.+.|+++++....... .........++. +.+.++..+|+|.|+|.|.|..|++
T Consensus 135 ~P~v~W~~~~~~~~~~~~---~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a 192 (203)
T 4fa8_A 135 HPHVQWLMPEGVEPAPTA---ANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEA 192 (203)
T ss_dssp CCEEEECCC---------------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEE
T ss_pred CCEEEEEECCeeecCccc---ccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEE
Confidence 999999985554322111 011122223333 4456899999999999999999954
No 6
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.95 E-value=4.6e-26 Score=161.93 Aligned_cols=175 Identities=19% Similarity=0.369 Sum_probs=128.7
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEe-CCceeeeeeeeeEeec
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIK-ADTKAVLAIHEHVITN 86 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~ 86 (238)
++.|...+..+.+.+|+++.|.|.+.... +.+.+.|++ ++..+.. .
T Consensus 2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~-------------------------~~~~v~W~~~~g~~~~~--------~ 48 (191)
T 1epf_A 2 VLQVDIVPSQGEISVGESKFFLCQVAGDA-------------------------KDKDISWFSPNGEKLSP--------N 48 (191)
T ss_dssp -CCEEEESSSEEEETTCCEEEEEEECCCS-------------------------CCCEEEEECTTSCEECC--------B
T ss_pred ceEEEecCCCcEEcCCCCEEEEEECCCCC-------------------------CCceEEEEeCCCccccC--------C
Confidence 56788889999999999999999996421 256799999 4443221 2
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG 164 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~ 164 (238)
..++..........+|.|.+++.+|+|.|+|.+.+... ....+.+.|..+|.+... +....+..|+.+.|.|.+.|
T Consensus 49 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~--~~~~~~~~g~~~~l~C~~~g 126 (191)
T 1epf_A 49 QQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNA--PTPQEFKEGEDAVIVCDVVS 126 (191)
T ss_dssp SSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEECCSEEEEC--CSSEECCTTSCEEECCEEEC
T ss_pred CCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcceEEEEEEEeecCceEecC--CCcEeecCCCeEEEEEEECC
Confidence 45666555445566999999999999999999987642 334455666666655432 34567889999999999999
Q ss_pred ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 165 YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 165 ~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
.|.|.+.|++ ++..+.... ........++.|.|.++..+|.|.|+|.|.|..+
T Consensus 127 ~p~~~v~W~~-~~~~~~~~~----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~ 179 (191)
T 1epf_A 127 SLPPTIIWKH-KGRDVILKK----DVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 179 (191)
T ss_dssp SSCCEEEEEE-TTEEGGGGC----CTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGG
T ss_pred CCCCEEEEEE-CCEEeeccC----CceEEEecCCeEEECCCChhhCEEEEEEEEEecc
Confidence 9999999999 554432211 1222333455799999999999999999999885
No 7
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.94 E-value=9e-26 Score=160.76 Aligned_cols=187 Identities=22% Similarity=0.349 Sum_probs=132.9
Q ss_pred CccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe
Q psy7941 5 RGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI 84 (238)
Q Consensus 5 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~ 84 (238)
...+|.|...+..+.+.+|+++.|.|.+.+ .|.+.+.|++++..+...
T Consensus 2 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~~--------------------------~p~~~v~W~~~~~~~~~~------ 49 (194)
T 2a38_A 2 TTQAPTFTQPLQSVVVLEGSTATFEAHISG--------------------------FPVPEVSWFRDGQVISTS------ 49 (194)
T ss_dssp CCEEEEEEECCCCEEEETTSCEEEEEEEEE--------------------------ESCCEEEEEESSSBCCTT------
T ss_pred CCCCCeEEccCCceEEECCCEEEEEEEEEe--------------------------cCCCEEEEEECCEEcccc------
Confidence 456899999999999999999999999853 235579999977653211
Q ss_pred ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEc---CCcccccccCCceeecCCCcEEEEE
Q psy7941 85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVI---PPDISSEETSGDMMVPEGGSAKLVC 160 (238)
Q Consensus 85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~---~~~~~~~~~~~~~~~~~g~~~~l~C 160 (238)
...++..... ....+|.|.+++.+|+|.|+|.+.+... ......+.|.. +|.+.. ......+..|+.+.|.|
T Consensus 50 -~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~~~~~~p~~~~--~~~~~~~~~g~~~~l~C 125 (194)
T 2a38_A 50 -TLPGVQISFS-DGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQ--RLQSMTVRQGSQVRLQV 125 (194)
T ss_dssp -TSTTCEEEEE-TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCEEEEEEE--CCCCEEECTTEEEEEEE
T ss_pred -cCCceEEEeC-CCEEEEEECCCCcccCEEEEEEEEcCCceEeEEEEEEEccCCCCCEEEe--CCccEEEcCCCEEEEEE
Confidence 0113333222 2345899999999999999999977533 33445566663 333322 23456788999999999
Q ss_pred EEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEee--ceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941 161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVES--EVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 161 ~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
.+.+.|.|.+.|++ ++..+.... .......+ ..|.|.++..+|.|.|+|.|.|..|. .+.++.|.|+
T Consensus 126 ~~~g~p~~~v~W~~-~~~~~~~~~-----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~ 194 (194)
T 2a38_A 126 RVTGIPTPVVKFYR-DGAEIQSSL-----DFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR-ATSTAELLVQ 194 (194)
T ss_dssp EEEEESCCEEEEEE-TTEECCCSS-----SEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEE-EEEEEEEEEC
T ss_pred EEEEecCCeEEEEE-CCEECCCCC-----cEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCc-eEEEEEEEEC
Confidence 99999999999999 554443211 11111111 26999999999999999999999994 4777777763
No 8
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.94 E-value=1.9e-25 Score=157.53 Aligned_cols=177 Identities=25% Similarity=0.389 Sum_probs=127.1
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN 87 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 87 (238)
+|.|...+..+.+.+|+++.|.|.+.+ .|.+.+.|++++..+....
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~--------------------------~p~~~v~W~k~~~~~~~~~-------- 47 (182)
T 1rhf_A 2 GLKLMGAPVKLTVSQGQPVKLNCSVEG--------------------------MEEPDIQWVKDGAVVQNLD-------- 47 (182)
T ss_dssp -----CCCEEEEEETTCCEEEEEEEES--------------------------CSSCCEEEEETTEECCSSE--------
T ss_pred CCEEEeCCcceEEeCCCcEEEEEEEeC--------------------------CCCCeEEEEECCeecCCCC--------
Confidence 578888999999999999999999963 3456799999876543221
Q ss_pred ccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941 88 ARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG 164 (238)
Q Consensus 88 ~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~ 164 (238)
+...... .....+|.|.+++.+|+|.|+|.+.+... ....+.|.|..+|.+... +....+..|+.+.|.|.+.+
T Consensus 48 -~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~--~~~~~~~~g~~~~l~C~~~g 124 (182)
T 1rhf_A 48 -QLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVE--PKDLAVPPNAPFQLSCEAVG 124 (182)
T ss_dssp -EEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEECSCEEEEC--CCCEEECTTCCEEEEEEEEC
T ss_pred -ceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEEEEEEEEEEecCCeEEec--CcceEecCCCEEEEEeEecC
Confidence 1111111 11134899999999999999999977533 345677888888876543 34467889999999999999
Q ss_pred ccCC-eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941 165 YPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 165 ~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
.|.| .+.|++ ++..+... ......|.|.++ +|+|.|+|.|.|..|...++++.|.|+
T Consensus 125 ~p~p~~v~W~~-~~~~~~~~----------~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~Vk 182 (182)
T 1rhf_A 125 PPEPVTIVWWR-GTTKIGGP----------APSPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHLQ 182 (182)
T ss_dssp SSSCCEEEEEE-TTEECSCS----------EESSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred CCCCCEEEEEc-CCeECCCC----------CCCceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEeC
Confidence 9999 999999 54443211 114456788777 589999999999999665668888773
No 9
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.94 E-value=1.9e-25 Score=159.35 Aligned_cols=189 Identities=17% Similarity=0.306 Sum_probs=136.7
Q ss_pred CCccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE
Q psy7941 4 VRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV 83 (238)
Q Consensus 4 ~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~ 83 (238)
+...+|.|...+..+.+.+|+++.|.|.+.. .|.+.+.|++++..+.
T Consensus 3 ~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~~--------------------------~p~~~v~W~~~~~~~~------- 49 (197)
T 3lcy_A 3 MSGEAPGIRKEMKDVTTKLGEAAQLSCQIVG--------------------------RPLPDIKWYRFGKELI------- 49 (197)
T ss_dssp CCCEEEEEEECCCCEEEETTSEEEEEEEEEE--------------------------ESCCEEEEEETTEEEC-------
T ss_pred ccCCCCcccccCCceEEeCCCcEEEEEEEec--------------------------CCCCEEEEEECCEECC-------
Confidence 3456899999999999999999999999853 2356799999876542
Q ss_pred eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCccccc-ccCCceeecCCCcEEEEEE
Q psy7941 84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSE-ETSGDMMVPEGGSAKLVCK 161 (238)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~-~~~~~~~~~~g~~~~l~C~ 161 (238)
...++.+... ....+|.|.+++.+|+|.|+|.+.+... ......+.|..+|.+... .......+..|+.+.|.|.
T Consensus 50 --~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~ 126 (197)
T 3lcy_A 50 --QSRKYKMSSD-GRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVM 126 (197)
T ss_dssp --CCSSEEEEES-SSEEEEEEECCSGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEE
T ss_pred --CCccEEEEeC-CCEEEEEEecCCccCCEEEEEEEECCCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEE
Confidence 2334444332 3345899999999999999999986533 344556777665554321 2234456788999999999
Q ss_pred EccccCCeEEEEeCCCeeeEeecCCCCCcceEEE--eeceEEEEEeec-CCCeEEEEEeeeCCCCCccceEEEEEEe
Q psy7941 162 AKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV--ESEVLSLTKVTR-SEMGAYQCIAANGVPPTVSKRLMLHVHC 235 (238)
Q Consensus 162 ~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~-~d~G~y~C~~~n~~g~~~~~~~~l~V~~ 235 (238)
+.+.|.|.+.|++ ++..+.... ...... ....|.|.++.. +|.|.|+|.|.|..|.. +.++.|.|..
T Consensus 127 ~~~~p~p~v~W~~-~~~~~~~~~-----~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~ 196 (197)
T 3lcy_A 127 YIGRPVPAMTWFH-GQKLLQNSE-----NITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTV-DAILDVEIQD 196 (197)
T ss_dssp EEEESCCEEEEEE-TTEECCCCS-----SEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEE-EEEEEEEEEC
T ss_pred EeeeeCCeeEEeE-CCEECCCCC-----ceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCce-EEEEEEEEec
Confidence 9999999999999 555443211 111111 125789999985 89999999999999944 7888888764
No 10
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.94 E-value=5.3e-26 Score=161.22 Aligned_cols=183 Identities=25% Similarity=0.427 Sum_probs=129.7
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN 87 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 87 (238)
+|.|...+....+.+|+++.|.|.+.. .|.+.+.|++++...... ..
T Consensus 2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~--------------------------~p~~~v~W~~~~~~~~~~-------~~ 48 (189)
T 2v5t_A 2 MLTFREVVSPQEFKQGEDAEVVCRVSS--------------------------SPAPAVSWLYHNEEVTTI-------SD 48 (189)
T ss_dssp CCEEEECCSSEEEETTSCEEECCEEEC--------------------------SSCCEEEEEC-----CBC-------CC
T ss_pred CceeeccCCCEEEeCCCcEEEEEEEcC--------------------------CCCCEEEEEECCccceec-------cC
Confidence 688888999999999999999999863 345679999987654321 23
Q ss_pred ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc---ceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT---KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG 164 (238)
Q Consensus 88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~ 164 (238)
.++..... .+|.|.+++.+|+|.|+|.+.+.... .....+.+..+|.+..........+..|+.+.|.|.+.+
T Consensus 49 ~~~~~~~~----~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g 124 (189)
T 2v5t_A 49 NRFAMLAN----NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASG 124 (189)
T ss_dssp TTEEECTT----SCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEE
T ss_pred CeEEEecC----CCEEEeeCCHhHCcEEEEEEEEcCCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEcc
Confidence 34443322 27999999999999999999765322 233456666666554433333456788999999999999
Q ss_pred ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941 165 YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 165 ~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
.|.+.+.|++ ++..+.... .......+..|.|.++..+|.|.|+|.|.|..|.. ..++.|.|.
T Consensus 125 ~p~~~v~W~~-~g~~~~~~~-----~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~ 187 (189)
T 2v5t_A 125 SPEPAISWFR-NGKLIEENE-----KYILKGSNTELTVRNIINSDGGPYVCRATNKAGED-EKQAFLQVF 187 (189)
T ss_dssp ESCCEEEEEE-TTEECCCSS-----SEEEETTTTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred CCCCeEEEEE-CCEECcCCC-----cEEEecCCCEEEEcCCChhhCeeEEEEEEeCCCce-eEEEEEEEE
Confidence 9999999999 555443211 11222234579999999999999999999999944 677777765
No 11
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.94 E-value=2.1e-25 Score=158.46 Aligned_cols=182 Identities=25% Similarity=0.401 Sum_probs=128.1
Q ss_pred ccceeccCceeEEEe-cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 8 EPDFLYPLENVTIAQ-GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~-g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
+|.|..+ ..+.+.+ |+++.|.|.+..... +.+.+.|++++..+..
T Consensus 3 ~P~i~~~-~~~~v~~~G~~v~l~C~~~~~~~------------------------~~~~v~W~~~~~~~~~--------- 48 (190)
T 2wv3_A 3 EPRIVTS-EEVIIRDSLLPVTLQCNLTSSSH------------------------TLMYSYWTKNGVELTA--------- 48 (190)
T ss_dssp CCEEEEC-CCEECCCSSSCEEEEEEEEECSS------------------------CEEEEEEEETTEECTT---------
T ss_pred CCccccc-ceEEEccCCceEEEEEEeccCCC------------------------CceEEEEEECCEECcc---------
Confidence 5666664 4455556 999999999964321 1257999998765321
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcccc
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYP 166 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p 166 (238)
.... .....|.|.+++.+|+|.|+|.+.+.+.....+.|.|..+|.+... +....+..|+.+.|.|.+.|.|
T Consensus 49 ~~~~------~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~l~V~~~p~~~~~--~~~~~~~~g~~v~l~C~~~g~p 120 (190)
T 2wv3_A 49 TRKN------ASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGH--KRSENKNEGQDAMMYCKSVGYP 120 (190)
T ss_dssp CCBC------CSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEECCCEEEEE--CSEEEEETTSCEEEEEEEECSS
T ss_pred cceE------eccEEEEEecCCcccCEEEEEEEEeCCcccccEEEEEecCCccccc--CCcceeeCCCcEEEEEEeCccC
Confidence 1111 1234999999999999999999987744455677888888876543 3446688999999999999999
Q ss_pred CCeEEEEeC-CCeeeEeecCCCCCcceEEEe--eceEEEEEee-cCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941 167 TPKITWRRE-DNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVT-RSEMGAYQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 167 ~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~-~~d~G~y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
.|.+.|+++ ++..+..... ......... ...|.|.++. .+|.|.|+|.|.|..|. ...++.|.|.
T Consensus 121 ~p~i~W~~~~~g~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~ 189 (190)
T 2wv3_A 121 HPEWMWRKKENGVFEEISNS--SGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGS-ASVSTVLRVR 189 (190)
T ss_dssp CCEEEEEEEETTEEEECCCT--TSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCE-EEEEEEEEEE
T ss_pred CCceEEEEcCCCceeeeecC--CCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCc-ceeEEEEEEE
Confidence 999999995 3333322111 111111111 2379999999 79999999999999994 4777777775
No 12
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.94 E-value=1.2e-25 Score=161.90 Aligned_cols=181 Identities=19% Similarity=0.266 Sum_probs=122.7
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
..|.|..+. .+.+.+|+.+.|.|.+.. +.|.+.+.|++++..+. .
T Consensus 2 ~~p~~~~~~-~~~v~eg~~v~l~c~~~~-------------------------~~P~p~i~W~kng~~l~---------~ 46 (207)
T 3rbs_A 2 IDPFTKSEL-AVEILEKGQVRFWMQAEK-------------------------LSGNAKVNYIFNEKEIF---------E 46 (207)
T ss_dssp ----CCEEE-EEEECGGGCEEEEEECSC-------------------------CCSCCEEEEEETTEEEC---------S
T ss_pred CCCeeecCC-ceEEEeCCeEEEEEEEec-------------------------CCCCCEEEEEECCEECc---------c
Confidence 456766654 688999999999999842 34678899999887643 2
Q ss_pred CccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEE---------------------cCCccccccc
Q psy7941 87 NARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVV---------------------IPPDISSEET 144 (238)
Q Consensus 87 ~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~---------------------~~~~~~~~~~ 144 (238)
+.++.+.... .+..+|.|.+++.+|+|.|+|.+.|+ .......+.+. .+|.+...
T Consensus 47 ~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~Ng-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-- 123 (207)
T 3rbs_A 47 GPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDG-KATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEY-- 123 (207)
T ss_dssp SSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEET-TEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEE--
T ss_pred CCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEECC-CeEEEEEEEEEccchhhhcccccccccccccCCCCceEec--
Confidence 3344443322 35568999999999999999999873 22322222211 12332221
Q ss_pred CCceeecCCCcEEEEEEEccc-cCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGY-PTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP 223 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~ 223 (238)
. ...+.+|+.+.|.|.+.|. |.|.+.|++ ++..+..... .........|.|.++..+|+|.|+|.|.|..|.
T Consensus 124 ~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k-~g~~l~~~~~-----~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 196 (207)
T 3rbs_A 124 L-SWEVTGECNVLLKCKVANIKKETHIVWYK-DEREISVDEK-----HDFKDGICTLLITEFSKKDAGIYEVILKDDRGK 196 (207)
T ss_dssp E-EEEEETTTEEEEEEEEESCCTTCEEEEEE-TTEEECCCCC-----CCCSSEEEEEEETTCCGGGCEEEEEEEEETTEE
T ss_pred C-CcEEcCCCcEEEEEEEeCCCCCCEEEEEE-CCEECCCCCc-----eEcCCCEEEEEECCCCcccCEEEEEEEEcCCCE
Confidence 1 2567889999999999998 999999999 5655533211 111122346999999999999999999999994
Q ss_pred CccceEEEEE
Q psy7941 224 TVSKRLMLHV 233 (238)
Q Consensus 224 ~~~~~~~l~V 233 (238)
. +.++.|.+
T Consensus 197 ~-~~~~~L~~ 205 (207)
T 3rbs_A 197 D-KSRLKLVD 205 (207)
T ss_dssp E-EEEEEECC
T ss_pred E-EEEEEEec
Confidence 4 66666643
No 13
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.94 E-value=2.9e-25 Score=158.33 Aligned_cols=181 Identities=22% Similarity=0.352 Sum_probs=131.2
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN 87 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 87 (238)
+|.|...+..+.+.+|+++.|.|.+.. +.|.+.+.|++++..+.....
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~-------------------------~~p~~~v~W~~~g~~l~~~~~------- 49 (195)
T 2c5d_C 2 ESPFVGNPGNITGARGLTGTLRCQLQV-------------------------QGEPPEVHWLRDGQILELADS------- 49 (195)
T ss_dssp CCSEEECCCCEEECTTCCEEEEEEEEE-------------------------ESSCCCCEEEETTEECCSCEE-------
T ss_pred CCeeccChhheEEecCCcEEEeccccc-------------------------CCCCcEEEEEECCEEcccCCC-------
Confidence 688999999999999999999999961 234567999998765433211
Q ss_pred ccEEEEEcCC--C----eEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEcCCcccccccCCceeecCCCcEEEE
Q psy7941 88 ARLSVTHNDA--N----TWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLV 159 (238)
Q Consensus 88 ~~~~~~~~~~--~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~ 159 (238)
.++.+..... . ..+|.|.+++.+|+|.|+|.+.+.... ...+.|.|..+|.+... +....+.+|+.+.|.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~--~~~~~~~~g~~~~l~ 127 (195)
T 2c5d_C 50 TQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEE--PEDRTVAANTPFNLS 127 (195)
T ss_dssp EEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEECCSCEEEEC--CCCEEECTTCCEEEE
T ss_pred CceEEEEccccccceeeccEEEEEeccccCCcEEEEEEEeCCCceecccEEEEEecCCeEEcC--CCcEEEcCCCEEEEE
Confidence 1122211111 0 238999999999999999999875332 23467888777766542 344678899999999
Q ss_pred EEEccccCC-eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941 160 CKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233 (238)
Q Consensus 160 C~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V 233 (238)
|.+.|.|.| .+.|+++ +..+..... . .....|.|.++. |+|.|+|.|.|..|...++.+.|.|
T Consensus 128 C~~~g~p~p~~v~W~~~-~~~~~~~~~-----~---~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 128 CQAQGPPEPVDLLWLQD-AVPLATAPG-----H---GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp EEEECSSCCCEEEEEES-SCBSSSSTT-----S---SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred eECCCCCCCCEEEEEEC-CEeccCCCC-----c---CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence 999999999 9999994 443322110 0 344568888776 7899999999999966457888888
No 14
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.94 E-value=5.4e-25 Score=156.15 Aligned_cols=182 Identities=19% Similarity=0.388 Sum_probs=129.2
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCcc
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNAR 89 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~ 89 (238)
.|...+..+.+.+|+++.|.|.+... |. .+.|++.++.... ...+
T Consensus 4 ~~~~~~~~~~v~~G~~v~L~C~~~~~--------------------------p~-~v~W~~~~~~~~~--------~~~~ 48 (189)
T 2v44_A 4 QVTISLSKVELSVGESKFFTCTAIGE--------------------------PE-SIDWYNPQGEKII--------STQR 48 (189)
T ss_dssp EEEESCSEEEEETTCCEEEEEEEEEC--------------------------CS-EEEEECTTSCBCC--------CCSS
T ss_pred EEEecCCceEEecCCcEEEEEEeecC--------------------------Ce-eEEEEeCCCCccC--------CCce
Confidence 56778889999999999999999642 23 5999995443322 2344
Q ss_pred EEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccC
Q psy7941 90 LSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPT 167 (238)
Q Consensus 90 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~ 167 (238)
+..... ....+|.|.+++.+|+|.|+|.+.+.... ...+.+.|..+|.+... .....+..|+.+.|.|.+.|.|.
T Consensus 49 ~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~v~~~p~~~~~--~~~~~~~~g~~~~l~C~~~g~p~ 125 (189)
T 2v44_A 49 VVVQKE-GVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREV--VSPQEFKQGEDAEVVCRVSSSPA 125 (189)
T ss_dssp EEEEEE-TTEEEEEECSCCGGGCEEEEEEEECTTSCEEEEEEEEEEECCCEEESC--CCSEEEETTSCEEECCEEECSSC
T ss_pred EEEECC-CCeEEEEEccCCcccCeEEEEEEEeCCCCcEEEEEEEEEecCCceeec--CCcEEEeCCCCEEEEEEECcCCC
Confidence 544432 23449999999999999999999876433 34556777777655432 33467889999999999999999
Q ss_pred CeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC-ccceEEEEEE
Q psy7941 168 PKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT-VSKRLMLHVH 234 (238)
Q Consensus 168 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~-~~~~~~l~V~ 234 (238)
|.+.|++++. .+.... ........++.|.|.++..+|.|.|+|.|.|..|.. ....+.|.|+
T Consensus 126 p~v~W~~~~~-~~~~~~----~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~~~v~Vn 188 (189)
T 2v44_A 126 PAVSWLYHNE-EVTTIS----DNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN 188 (189)
T ss_dssp CEEEEEEEC---CEECC----CTTEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEE
T ss_pred CcEEEEECCc-EEeccC----CCCEEEecCCcEEEEEcCcccCeEEEEEEEccccCceeeeeEEEEEe
Confidence 9999999544 332211 122233345589999999999999999999998633 3455555554
No 15
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=99.94 E-value=8.3e-25 Score=164.83 Aligned_cols=190 Identities=25% Similarity=0.376 Sum_probs=140.1
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
..+|.|...+..+.+.+|+++.|.|.+.+ .|.+.+.|++++..+.
T Consensus 3 ~~pP~~~~~p~~~~~~~G~~v~l~C~~~g--------------------------~p~~~v~W~~~~~~~~--------- 47 (284)
T 2rik_A 3 MAPPFFDLKPVSVDLALGESGTFKCHVTG--------------------------TAPIKITWAKDNREIR--------- 47 (284)
T ss_dssp CCCCEEEECCCCEEEETTCCEEEEEEEES--------------------------SSCCEEEEEETTEECC---------
T ss_pred cCCCEEEccccceEecCCCcEEEEEEEEc--------------------------CCCCEEEEEECCEECc---------
Confidence 35788999999999999999999999963 3456799999876542
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG 164 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~ 164 (238)
...++..... ....+|.|.+++.+|+|.|+|.+.+.. .....+.|.|..+|.+... ......+.+|+.+.|.|.+.|
T Consensus 48 ~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~-~~~~~~v~~g~~~~l~C~~~g 125 (284)
T 2rik_A 48 PGGNYKMTLV-ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKK-LEPSRIVKQDEHTRYECKIGG 125 (284)
T ss_dssp SSSSEEEEEE-TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCEEEEC-CCSEEEEETTCCEEEEEEEES
T ss_pred CCCcEEEEEc-CCEEEEEEecCCcccCEEEEEEEEECCceEEEEEEEEccCCCccccc-CCCceEecCCceEEEEEEEee
Confidence 1233333322 234589999999999999999997753 3445667888887775532 233456789999999999999
Q ss_pred ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 165 YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 165 ~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
.|.+.+.|++ ++..+.... ............|.|.++..+|.|.|+|.+.|..|. .+..+.|.|..+|
T Consensus 126 ~p~~~v~W~~-~~~~~~~~~---~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p 193 (284)
T 2rik_A 126 SPEIKVLWYK-DETEIQESS---KFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS-ASSSTSLKVKEPP 193 (284)
T ss_dssp SSCCEEEEEE-TTEECCCSS---SEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCE-EEEEEEEEEECCC
T ss_pred eCCCEEEEEE-CCEECcCCC---cEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCc-eeEEEEEEEecCC
Confidence 9999999999 444432211 001111122357999999999999999999999984 4788889998876
No 16
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.94 E-value=6.9e-25 Score=155.84 Aligned_cols=185 Identities=25% Similarity=0.471 Sum_probs=128.4
Q ss_pred ccceeccC--ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 8 EPDFLYPL--ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 8 ~p~~~~~~--~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
+|.|...+ ..+.+.+|+++.|.|.+.. .|.+.+.|++++..+.
T Consensus 2 pP~i~~~~~~~~~~v~~G~~v~l~C~~~~--------------------------~p~~~v~W~~~~~~~~--------- 46 (192)
T 2va4_A 2 MPAISMPQKSFNATAERGEEMTFSCRASG--------------------------SPEPAISWFRNGKLIE--------- 46 (192)
T ss_dssp CCEEECSCCEEEEETTSCCCEEEECEEEC--------------------------SSCCEEEEEETTEECC---------
T ss_pred CCcccCCCCCcEEEEecCCCEEEEEeecc--------------------------CCCCeEEEEECCeEcC---------
Confidence 57776554 4678889999999999853 3456799999876532
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG 164 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~ 164 (238)
...++.+... ..+|.|.+++.+|+|.|+|.+.+.. .....+.|.|..+|.+... ....+..|+.+.|.|.+.+
T Consensus 47 ~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~---~~~~~~~g~~v~l~C~~~~ 120 (192)
T 2va4_A 47 ENEKYILKGS---NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQL---KNETTYENGQVTLVCDAEG 120 (192)
T ss_dssp CSSSEEEETT---TTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEE---CCEEECTTSEEEEEEEEEE
T ss_pred CCccEEEeCC---eeEEEEecCChhcCcEEEEEEEccccccceEEEEEEEccCccccc---CcceEEeCCeEEEEEEecC
Confidence 1234433321 2289999999999999999997753 3344556777776665432 2345677999999999999
Q ss_pred ccCCeEEEEeCCCeeeEeecCCCCCcceEEE---eeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941 165 YPTPKITWRREDNKEIIVRSNPPSSQKVFSV---ESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 165 ~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
.|.+.+.|++++................... ....|.|.++..+|.|.|+|.|.|..|. .+.++.|.|+
T Consensus 121 ~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~ 192 (192)
T 2va4_A 121 EPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGG-HQKSMYLDIE 192 (192)
T ss_dssp ESCCEEEEEETTTTEEECTTCBCTTSCEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCE-EEEEEEEEEC
T ss_pred CCCCcEEEEeCCCCceeeccccccCCcEEEeeccCceEEEEecCCcccCEEEEEEEEecCCc-eEEEEEEEeC
Confidence 9999999999532222111111111111111 1357999999999999999999999995 4788888774
No 17
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.93 E-value=9.1e-25 Score=157.55 Aligned_cols=193 Identities=21% Similarity=0.320 Sum_probs=135.0
Q ss_pred cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-e--eEee
Q psy7941 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-E--HVIT 85 (238)
Q Consensus 9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~--~~~~ 85 (238)
+.|..++..+.+.+|+++.|.|.+.. .|.+.+.|++++........ . ....
T Consensus 2 ~~v~~~~~~~~v~~G~~v~L~C~~~~--------------------------~p~~~v~W~~~~~~~~~~~~~~~~~~~~ 55 (212)
T 1f97_A 2 GSVYTAQSDVQVPENESIKLTCTYSG--------------------------FSSPRVEWKFVQGSTTALVCYNSQITAP 55 (212)
T ss_dssp CEEECSCSEEEEETTCCEEEECEEES--------------------------CSSEEEEEEEEETTEEEEEEETTEECGG
T ss_pred ceEEecCCCeEEEcCCCEEEEeEeCC--------------------------CCCcEEEEEECCCceeeEEecCCccccc
Confidence 46778889999999999999999963 24667999997665321111 0 0011
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC---cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEE-
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM---TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCK- 161 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~- 161 (238)
...++.... .+|.|.+++.+|+|.|+|.+.+... ....+.|.|..+|.+..... ...+.+|+.+.|.|.
T Consensus 56 ~~~r~~~~~-----~~L~i~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~--~~~~~~g~~~~l~C~~ 128 (212)
T 1f97_A 56 YADRVTFSS-----SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISV--PSSVTIGNRAVLTCSE 128 (212)
T ss_dssp GTTTEEEET-----TEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEEEC--CSEEETTSCEEEEEEC
T ss_pred ccCcEEeec-----eeEEEcccCcccCeEEEEEEEccCCCcccEEEEEEEEEcCCCCcccCC--ccccCCCCeEEEEEEc
Confidence 234555443 3999999999999999999977532 34556788888777654322 246788999999999
Q ss_pred EccccCCeEEEEeCCCe-eeEeecCC--CC--CcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC-ccceEEEEEEe
Q psy7941 162 AKGYPTPKITWRREDNK-EIIVRSNP--PS--SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT-VSKRLMLHVHC 235 (238)
Q Consensus 162 ~~~~p~~~~~W~~~~~~-~~~~~~~~--~~--~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~-~~~~~~l~V~~ 235 (238)
+.+.|.|.+.|++ ++. .+...... .. ...........|.|.++..+|.|.|+|.|.|..|.. .+..+.|.|..
T Consensus 129 ~~~~p~~~i~W~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~ 207 (212)
T 1f97_A 129 HDGSPPSEYSWFK-DGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207 (212)
T ss_dssp SCCBSCCEEEEEE-TTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred ccCcCCCEEEEEe-CCcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence 6889999999999 444 44322110 00 011111235689999999999999999999999955 46778777764
No 18
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=99.93 E-value=9.5e-25 Score=165.00 Aligned_cols=191 Identities=19% Similarity=0.347 Sum_probs=137.2
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN 87 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 87 (238)
+|.+...|....+.+|+++.|.|.+.... +.+.+.|++.++.... ...
T Consensus 2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~-------------------------~~~~i~W~~~~g~~~~-------~~~ 49 (291)
T 1qz1_A 2 VLQVDIVPSQGEISVGESKFFLCQVAGDA-------------------------KDKDISWFSPNGEKLS-------PNQ 49 (291)
T ss_dssp CCCEEEESSSEEEETTCCEEEEEEESSCC-------------------------SCCEEEEECTTSCBCC-------SSC
T ss_pred CcceEecCCCceEeCCCeEEEEEEeCCCC-------------------------CCcEeEEECCCCeECc-------cCC
Confidence 57888899999999999999999986321 2467999994433221 123
Q ss_pred ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccc
Q psy7941 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY 165 (238)
Q Consensus 88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~ 165 (238)
.++.+........+|.|.+++.+|+|.|+|.+.+.... ...+.+.|..+|.+.. .+....+.+|+.+.|.|.+.+.
T Consensus 50 ~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~--~~~~~~~~~g~~v~l~C~~~~~ 127 (291)
T 1qz1_A 50 QRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKN--APTPQEFKEGEDAVIVCDVVSS 127 (291)
T ss_dssp SSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEEEEEEEEECCSEEEE--CCSSEEEETTSCEEECCEEECS
T ss_pred ceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCCCeeEEEEEEEeeccccccC--CCCcccccCCCeEEEEEEeccC
Confidence 45555544455669999999999999999999876433 3344566666655443 2445678899999999999999
Q ss_pred cCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC-CCCccceEEEEEEeec
Q psy7941 166 PTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV-PPTVSKRLMLHVHCTY 237 (238)
Q Consensus 166 p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~-g~~~~~~~~l~V~~~p 237 (238)
|.+.+.|++++ ..+... .........++.|.|.++..+|.|.|+|.+.|.. +......+.|.|..+|
T Consensus 128 p~~~v~W~~~~-~~~~~~----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p 195 (291)
T 1qz1_A 128 LPPTIIWKHKG-RDVILK----KDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPP 195 (291)
T ss_dssp SCCEEEEEETT-SCSSTT----CCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEE
T ss_pred CCCEEEEEECC-EEcccC----CCceEEEccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCC
Confidence 99999999954 332211 1122233345689999999999999999999976 4333567778887766
No 19
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.93 E-value=8.4e-26 Score=163.07 Aligned_cols=197 Identities=21% Similarity=0.369 Sum_probs=133.6
Q ss_pred cCCCccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee
Q psy7941 2 VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE 81 (238)
Q Consensus 2 ~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~ 81 (238)
|.+...+|.|...+..+.+.+|+++.|.|.+.. .|.+.+.|++++..+......
T Consensus 3 l~~~~~pp~i~~~p~~~~v~~G~~v~l~C~~~~--------------------------~p~~~v~W~~~~~~~~~~~~~ 56 (212)
T 2v9r_A 3 LRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEG--------------------------RPTPTIEWYKGGERVETDKDD 56 (212)
T ss_dssp ---CCEEEEEEECCCCEEECTTCCEEECCEEEE--------------------------ESCCEEEEEETTEECCCTTTC
T ss_pred cCcccCCcceecCCCceEEeCCCcEEEEEEcCC--------------------------CCCCEEEEEECCEEeeccccc
Confidence 456678899999999999999999999999853 235679999987654321100
Q ss_pred eEeecCccEEEEEcCCC--eEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEcCCcccccccCCceeecCCCcEE
Q psy7941 82 HVITNNARLSVTHNDAN--TWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVIPPDISSEETSGDMMVPEGGSAK 157 (238)
Q Consensus 82 ~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~ 157 (238)
............ ...|.|.+++.+|+|.|+|.+.+.... ...+.+.|...+.... ..+....+..|+.+.
T Consensus 57 -----~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~-~~~~~~~~~~g~~~~ 130 (212)
T 2v9r_A 57 -----PRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFR-QNPSDVMVAVGEPAV 130 (212)
T ss_dssp -----TTCSEEECTTSCEEESSCCCCSSCCCSCEEEEEEEEETTEEEECCCEEEEECEECSSCS-BCCCCEEEETTSCEE
T ss_pred -----cccceEEecCCcEEEEEEEecCCCcccCeEEEEEEECCCCceeecceEEEEEeccccce-eCCCceEecCCCcEE
Confidence 000011111111 114556778999999999999875432 3345666665333221 223456788999999
Q ss_pred EEEEE-ccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEee
Q psy7941 158 LVCKA-KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCT 236 (238)
Q Consensus 158 l~C~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~ 236 (238)
|.|.+ .+.|.+.+.|++ ++..+.... .. ....++.|.|.++..+|.|.|+|.|.|..|...+..+.|.|..+
T Consensus 131 l~C~~~~~~p~~~v~W~~-~~~~l~~~~-----~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~ 203 (212)
T 2v9r_A 131 MECQPPRGHPEPTISWKK-DGSPLDDKD-----ER-ITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLER 203 (212)
T ss_dssp EECBCCCEESCCEEEEEE-TTEEECTTS-----TT-EEEETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred EEEecCCCCCCCEEEEEE-CCccCCCCc-----ce-EEccCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeC
Confidence 99998 889999999999 555443211 11 23345689999999999999999999999966566789999987
Q ss_pred c
Q psy7941 237 Y 237 (238)
Q Consensus 237 p 237 (238)
|
T Consensus 204 P 204 (212)
T 2v9r_A 204 P 204 (212)
T ss_dssp -
T ss_pred c
Confidence 7
No 20
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.93 E-value=7.2e-25 Score=166.79 Aligned_cols=192 Identities=22% Similarity=0.301 Sum_probs=139.6
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
.+|.|...+..+.+.+|+++.|.|.+.+ .|.+.+.|++++..+.. .
T Consensus 3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g--------------------------~p~~~v~W~~~~~~~~~--------~ 48 (305)
T 2nzi_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTG--------------------------HPKPIVKWYRQGKEIIA--------D 48 (305)
T ss_dssp CCCEEEECCCCEEECTTCCEEEEEEEEC--------------------------SSCCEEEEEETTEECCC--------C
T ss_pred CCCeeeecccceEEeCCCcEEEEEEEeC--------------------------CCCCeEEEEECCEEccc--------C
Confidence 5789999999999999999999999853 34667999998765431 2
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCccccc---ccCCceeecCCCcEEEEEEE
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSE---ETSGDMMVPEGGSAKLVCKA 162 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~---~~~~~~~~~~g~~~~l~C~~ 162 (238)
..++.......+..+|.|.+++.+|+|.|+|.+.+... ....+.|.|..+|.+... .......+..|+.+.|.|.+
T Consensus 49 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~ 128 (305)
T 2nzi_A 49 GLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF 128 (305)
T ss_dssp SSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEE
T ss_pred CCeEEEEECCCCEEEEEEccCChhhCeEEEEEEEcCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEE
Confidence 34555554445566999999999999999999977533 344566777665543221 11244667889999999999
Q ss_pred ccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEE-eecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 163 KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTK-VTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 163 ~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
.|.|.+.+.|+++ +..+.... ............|.|.+ +..+|.|.|+|.|.|..|. ...++.|.|..+|
T Consensus 129 ~g~p~p~i~W~~~-~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~-~~~~~~l~v~~~P 199 (305)
T 2nzi_A 129 SGKPDPVITWQKG-QDLIDNNG---HYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGI-DQKTVELDVADVP 199 (305)
T ss_dssp EEESCCEEEEEES-SSBCCSSS---SCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEE-EEEEEEEEEEBCC
T ss_pred CCCCCCEEEEEEC-CEECCCCC---cEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCc-eeeEEEEEEecCC
Confidence 9999999999994 44332111 00111111234788888 9999999999999999995 4778888887655
No 21
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.93 E-value=9.8e-25 Score=156.79 Aligned_cols=169 Identities=16% Similarity=0.186 Sum_probs=126.8
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCc-eEEEEeCCceeeeeeeeeEee
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM-KVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~ 85 (238)
..|.+...+....+.+|+++.|.|.+.. .|.+ .+.|++++..+..
T Consensus 6 p~p~i~~~p~~~~v~~G~~v~L~C~~~~--------------------------~p~~~~v~W~k~g~~l~~-------- 51 (204)
T 3sgj_C 6 PKAVVFLEPQWYRVLEKDSVTLKCQGAY--------------------------SPEDQSTQWFHNESLISS-------- 51 (204)
T ss_dssp CBCEEEEESCCSEEETTCCEEEEEECCS--------------------------SSSCCCEEEEETTEEESC--------
T ss_pred CCCeEEEcCCCeEEECCCCEEEEEcCCC--------------------------CCCCcEEEEEECCEEccc--------
Confidence 4677778888889999999999999863 2233 4999998664321
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccc
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY 165 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~ 165 (238)
.. .+|.|.+++.+|+|.|+|.+.+. ..+..+.|.|..++.+... ....+.+|+.+.|.|.+.+.
T Consensus 52 -~~-----------~~L~i~~v~~~D~G~Y~C~a~n~-~~s~~~~l~V~~~p~~~~~---~~~~v~~G~~v~L~C~~~~~ 115 (204)
T 3sgj_C 52 -QA-----------SSYFIDAATVDDSGEYRCQTQLS-TLSDPVQLEVHIGWLLLQA---PRWVFKEEDPIHLRCHSWKN 115 (204)
T ss_dssp -CS-----------SEEEESSCCGGGCEEEEEEETTS-BCCCCEEEEEECSSEEEEC---SCSEEETTCCEEEEEEEGGG
T ss_pred -Cc-----------cEEEEecccccCCEEEEEEeCCC-cccccEEEEEecCceEecC---CceeEeCCCcEEEEEEecCC
Confidence 11 29999999999999999999763 3455677888876654332 22567889999999999664
Q ss_pred -cCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 166 -PTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 166 -p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
|.+.+.|++ ++..+.. ......|.|.++..+|+|.|+|.|.|..+...+..+.|.|..+|
T Consensus 116 ~p~~~v~W~k-~g~~~~~-----------~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~ 176 (204)
T 3sgj_C 116 TALHKVTYLQ-NGKGRKY-----------FHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGL 176 (204)
T ss_dssp CCCEEEEEEE-TTEEEEE-----------EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred CCCceEEEEE-CCcEeec-----------ccCCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcC
Confidence 668999999 5544321 22355799999999999999999999655466888899998654
No 22
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.93 E-value=7.8e-24 Score=153.88 Aligned_cols=198 Identities=17% Similarity=0.270 Sum_probs=126.4
Q ss_pred eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe------e
Q psy7941 12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI------T 85 (238)
Q Consensus 12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~------~ 85 (238)
..++..+.+.+|+++.|.|.+...... +...+.+.|++++............ .
T Consensus 5 ~~p~~~v~~~~G~~v~L~C~~~~~p~~---------------------~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~ 63 (222)
T 3sbw_C 5 TVPKDLYVVEYGSNMTIECKFPVEKQL---------------------DLAALIVYWEMEDKNIIQFVHGEEDLKVQHSS 63 (222)
T ss_dssp BCSCSEEEEETTSCEEEEEECCCCSSC---------------------CTTTCEEEEEETTEEEEEEETTEECSSSSCGG
T ss_pred ecCCccEEEEcCCcEEEEeEecCCCCC---------------------CCccEEEEEEECCcEEEEEeCCcccccccccc
Confidence 445677889999999999998532111 1113479999986333222111111 1
Q ss_pred cCccEEEEEc--CCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEc
Q psy7941 86 NNARLSVTHN--DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK 163 (238)
Q Consensus 86 ~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~ 163 (238)
..+|+.+... ..+..+|.|.+++.+|+|.|+|.+.+.+.....+.|.|..++...... ....+..|+.+.|.|.+.
T Consensus 64 ~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~~~~~--~~~~~~~g~~v~L~C~~~ 141 (222)
T 3sbw_C 64 YRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQR--ILVVDPVTSEHELTCQAE 141 (222)
T ss_dssp GSSSEEECHHHHTTTEEEEEESSCCGGGCEEEEEEEESSSEEEEEEEEEEEBCCCCCEEE--EEEEETTTTEEEEEEEEE
T ss_pred ccCceEEccccccCCEEEEEEcCcccccCeEEEEEEEeCCCceeEEEEEEECCCCCCCce--eeeeecCCCcEEEEEEec
Confidence 1245444332 335669999999999999999999885444556678887665543211 112567899999999999
Q ss_pred cccCCeEEEEeCCCeeeEeecCCCCCcceEEEeec---eEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 164 GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE---VLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 164 ~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
|+|.|.+.|+++++..+...... ......++ ......+..+|.|.|+|.|.|..| ....++.|.|..+|
T Consensus 142 g~P~p~i~W~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g-~~~~~~~l~v~~~p 213 (222)
T 3sbw_C 142 GYPKAEVIWTSSDHQVLSGKTTT----TNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDP-EENHTAELVIPELP 213 (222)
T ss_dssp EBSCCEEEEEETTCCEECCEEEE----EECC----CEEEEEEEEEECCTTCEEEEEEEETTT-TEEEEEEEECCCC-
T ss_pred CCCCCeEEEEECCCceecCccce----EEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCcc-ceeeEEEEEecCCc
Confidence 99999999999656544321100 00001111 122234567899999999999999 44788888887655
No 23
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.93 E-value=2.1e-24 Score=151.35 Aligned_cols=168 Identities=15% Similarity=0.205 Sum_probs=126.3
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCc-eEEEEeCCceeeeeeeeeEee
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM-KVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~ 85 (238)
.+|.+...+..+.+.+|+++.|.|.+... |.+ .+.|++++..+.
T Consensus 6 ~~p~i~~~p~~~~v~~G~~v~L~C~~~~~--------------------------p~~~~~~W~~~~~~~~--------- 50 (175)
T 1fnl_A 6 PKAVVFLEPQWYSVLEKDSVTLKCQGAYS--------------------------PEDNSTQWFHNESLIS--------- 50 (175)
T ss_dssp CCCEEEEESCCSEEETTCCEEEEEECCCB--------------------------TTBCCCEEEETTEEEE---------
T ss_pred CCCEEEEcCCceeeeCCCcEEEEeeCCCC--------------------------CCCcceEEEECCEEcc---------
Confidence 56788888888899999999999998542 223 378999765432
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccc
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY 165 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~ 165 (238)
. ...+|.|.+++.+|+|.|+|.+.+.. ......+.|..++.... .....+.+|+.+.|.|.+.+.
T Consensus 51 ~-----------~~~~L~i~~~~~~d~G~Y~C~~~n~~-~s~~~~l~V~~~~~~~~---~~~~~~~~g~~~~l~C~~~~~ 115 (175)
T 1fnl_A 51 S-----------QASSYFIDAATVNDSGEYRCQTNLST-LSDPVQLEVHIGWLLLQ---APRWVFKEEDPIHLRCHSWKN 115 (175)
T ss_dssp S-----------SCSEEEESSCCGGGCEEEEEECSSSC-CCCCEEEEEECSSEEEE---CSCSEEETTCCEEEEEEECTT
T ss_pred C-----------CceEEEEeCCCcccCEEEEEEeeCCc-ccccEEEEEeCCCceee---CCCceecCCCCEEEEEEcCCC
Confidence 1 11289999999999999999997643 35566777775443322 123557889999999999886
Q ss_pred cC-CeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEee
Q psy7941 166 PT-PKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCT 236 (238)
Q Consensus 166 p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~ 236 (238)
|+ +.+.|++ ++..+.. ......|.|.++..+|.|.|+|.|.|..|...+..+.|.|..+
T Consensus 116 ~~~~~~~W~k-~g~~~~~-----------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~ 175 (175)
T 1fnl_A 116 TALHKVTYLQ-NGKDRKY-----------FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQA 175 (175)
T ss_dssp CCCEEEEEEE-TTEEEEE-----------EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECC
T ss_pred CCceEEEEEE-CCeEccC-----------CCCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEeCC
Confidence 55 5999999 5554421 2245689999999999999999999987766688888888753
No 24
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=99.93 E-value=8.6e-25 Score=157.39 Aligned_cols=188 Identities=17% Similarity=0.251 Sum_probs=124.3
Q ss_pred eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceee----eeee--e--eE
Q psy7941 12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAV----LAIH--E--HV 83 (238)
Q Consensus 12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~----~~~~--~--~~ 83 (238)
...+..+.+.+|+++.|.|.... .+.+.+.|++++.... .... . ..
T Consensus 3 ~i~~~~~~v~~G~~v~L~C~~~~--------------------------~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~ 56 (208)
T 3r4d_A 3 TIEAVPPQVAEDNNVLLLVHNLP--------------------------LALGAFAWYKGNTTAIDKEIARFVPNSNMNF 56 (208)
T ss_dssp EEEEESSEEETTCCEEEEEECCC--------------------------SSCSEEEEEESSCCCGGGEEEEEEGGGTEEE
T ss_pred cccCccceeecCCcEEEEEeCCC--------------------------CCceEEEeccCCCCCccceEEEEecCCCccc
Confidence 34455577899999999999532 3356799999753211 1000 0 00
Q ss_pred e--ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEcCCcccccccCCceeecCCCcEEEE
Q psy7941 84 I--TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLV 159 (238)
Q Consensus 84 ~--~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~ 159 (238)
. ...+|+.+.. +.+|.|.+++.+|+|.|+|.+.+... ......|.|..++........... +..|+.+.|.
T Consensus 57 ~~~~~~~r~~~~~----~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~-~~~g~~v~l~ 131 (208)
T 3r4d_A 57 TGQAYSGREIIYS----NGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT-VKELDSVTLT 131 (208)
T ss_dssp ECTTCCSSEEECT----TSCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS-CCTTCCEEEE
T ss_pred cCccccceeEEec----CCeEEEccccccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce-EeeCCCEEEE
Confidence 0 0123444332 22799999999999999999987632 334455677655332211112222 7889999999
Q ss_pred EEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 160 CKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 160 C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
|.+.+.| |.+.|++ ++..+... ........+..|.|.++..+|.|.|+|.|.|..|...+..++|.|..+|
T Consensus 132 C~~~~~p-p~i~W~~-~g~~l~~~-----~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~ 202 (208)
T 3r4d_A 132 CLSNDIG-ANIQWLF-NSQSLQLT-----ERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP 202 (208)
T ss_dssp EECSCTT-CEEEEEE-TTEECCCC-----SSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC---
T ss_pred EECCCCC-CceEEEE-CCEeCCCC-----CCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCC
Confidence 9999866 7999999 55544321 1112222336899999999999999999999999888999999998876
No 25
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.93 E-value=8.7e-25 Score=160.88 Aligned_cols=198 Identities=20% Similarity=0.328 Sum_probs=126.9
Q ss_pred CCccccceecc----CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee
Q psy7941 4 VRGFEPDFLYP----LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI 79 (238)
Q Consensus 4 ~~~~~p~~~~~----~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~ 79 (238)
+...+|.|..+ +..+.+.+|+++.|.|.+.. .|.+.+.|++++..+....
T Consensus 7 v~~~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~--------------------------~p~~~v~W~~~~~~~~~~~ 60 (241)
T 3grw_A 7 VDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAG--------------------------NPTPSISWLKNGREFRGEH 60 (241)
T ss_dssp ----CCEESSGGGGSCCEEEEETTSEEEEECCEEC--------------------------SSCCEEEEEETTEECCGGG
T ss_pred ccCCCceeEcCCCCCCcceEEcCCCeEEEEEEecC--------------------------CCCceeEEEECCcccCCCC
Confidence 44557777655 45788999999999999863 3456799999876542110
Q ss_pred eeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCc---ccccccCCceeecCCCc
Q psy7941 80 HEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPD---ISSEETSGDMMVPEGGS 155 (238)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~---~~~~~~~~~~~~~~g~~ 155 (238)
. ....... ....+|.|.+++.+|+|.|+|.+.+.. .......+.|...+. ......+....+..|+.
T Consensus 61 ~------~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~ 131 (241)
T 3grw_A 61 R------IGGIKLR---HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSD 131 (241)
T ss_dssp S------TTCCEEE---GGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCC
T ss_pred c------ccceeee---ccceEEEEEeCCcccCEEEEEEEeecCCceEEEEEEEEeccCCCCceeecCCCccceecCCCE
Confidence 0 0011111 122389999999999999999997753 334455667764221 11222244567888999
Q ss_pred EEEEEEEccccCCeEEEEeC---CCeeeEeecCCCCCc-----ceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccc
Q psy7941 156 AKLVCKAKGYPTPKITWRRE---DNKEIIVRSNPPSSQ-----KVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSK 227 (238)
Q Consensus 156 ~~l~C~~~~~p~~~~~W~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~ 227 (238)
+.|.|.+.+.|.+.+.|+++ ++..+.......... .........|.|.++..+|.|.|+|.|.|..|.. +.
T Consensus 132 v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~-~~ 210 (241)
T 3grw_A 132 VEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVA-EK 210 (241)
T ss_dssp EEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEE-EE
T ss_pred EEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceE-EE
Confidence 99999999999999999983 222221110000000 0001134579999999999999999999999944 88
Q ss_pred eEEEEEEeec
Q psy7941 228 RLMLHVHCTY 237 (238)
Q Consensus 228 ~~~l~V~~~p 237 (238)
++.|.|..+|
T Consensus 211 ~~~l~V~~~p 220 (241)
T 3grw_A 211 AFWLSVHGPR 220 (241)
T ss_dssp EEEEEC----
T ss_pred EEEEEecCCC
Confidence 8999998876
No 26
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.93 E-value=3.6e-25 Score=159.84 Aligned_cols=196 Identities=19% Similarity=0.339 Sum_probs=131.8
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce-------eeeeeeeeE
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK-------AVLAIHEHV 83 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-------~~~~~~~~~ 83 (238)
+..++..+.+.+|+++.|.|.+...... ...+.+.|++.+.. .........
T Consensus 3 i~~~~~~v~v~~G~~v~L~C~~~~~~~~----------------------~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~ 60 (214)
T 3jz7_A 3 ITTPEQRIEKAKGETAYLPCKFTLSPED----------------------QGPLDIEWLISPSDNQIVDQVIILYSGDKI 60 (214)
T ss_dssp ---CEEEEEEETTSCEEECCBCCCCTTC----------------------CSCCEEEEEEEESSSSCCSEEEEEEETTEE
T ss_pred eecCCceEEEecCCCEEEEEEEecCCCC----------------------CCcEEEEEEecCCCCCCCceEEEEEeCCeE
Confidence 3456678899999999999998643211 01357999985321 111111111
Q ss_pred ee-----cCccEEEEE--cCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCcccccccCCceeecCCCc
Q psy7941 84 IT-----NNARLSVTH--NDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDISSEETSGDMMVPEGGS 155 (238)
Q Consensus 84 ~~-----~~~~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~ 155 (238)
.. ..+|+.+.. ......+|.|.+++.+|+|.|+|.+.+.. .....+.|.|..+|.+.... ....+..|+.
T Consensus 61 ~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~--~~~~~~~g~~ 138 (214)
T 3jz7_A 61 YDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCF--VDGSEEIGND 138 (214)
T ss_dssp ECCCCGGGTTTEEESCSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEE--EESCCBTTCC
T ss_pred ccccCCccccceEEeccCccCCcccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceee--eecceecCCc
Confidence 11 144555433 12245589999999999999999997753 34556678888877754332 2234778999
Q ss_pred EEEEEEE-ccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941 156 AKLVCKA-KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 156 ~~l~C~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
+.|.|.+ .+.|.+.+.|+++++...... .......++.|.|.++..+|.|.|+|.|.|..|.. +.++.|.|.
T Consensus 139 v~l~C~~~~g~p~~~v~W~~~~~~~~~~~------~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~ 211 (214)
T 3jz7_A 139 FKLKCEPKEGSLPLQFEWQKLSDSQTMPT------PWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSD-QCMLRLDVV 211 (214)
T ss_dssp EEEEEECSBCCSSCEEEEEECSTTCCCCG------GGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEECCB
T ss_pred EEEEecCCCCCCCCEEEEEECCCCCccCc------cceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcE-EEEEEEEEe
Confidence 9999999 889999999999543221111 01112234489999999999999999999999954 888888888
Q ss_pred eec
Q psy7941 235 CTY 237 (238)
Q Consensus 235 ~~p 237 (238)
.||
T Consensus 212 ~P~ 214 (214)
T 3jz7_A 212 PPS 214 (214)
T ss_dssp CCC
T ss_pred CCC
Confidence 665
No 27
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.93 E-value=1e-24 Score=158.36 Aligned_cols=172 Identities=20% Similarity=0.319 Sum_probs=130.0
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
+..+.|...+..+.+.+|+++.|.|.+. +.|.+.+.|++++..+..
T Consensus 16 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~--------------------------~~p~~~v~W~~~~~~~~~-------- 61 (218)
T 3k0w_A 16 PRGSKITVNPESKAVLAGQFVKLCCRAT--------------------------GHPFVQYQWFKMNKEIPN-------- 61 (218)
T ss_dssp ---CCEEECCCCEEEETTSBEEEECEET--------------------------TTTSSEEEEEETTEECTT--------
T ss_pred CCCCEEEECCCCeEEeCCCcEEEEeeec--------------------------CCCCCEEEEEECCEECCC--------
Confidence 3568889999999999999999999984 234668999998765321
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEcCCc-------------ccccccCCceee
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVIPPD-------------ISSEETSGDMMV 150 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~~~~-------------~~~~~~~~~~~~ 150 (238)
. ...+|.|.+++.+|+|.|+|.+.+.... ...+.+.|...+. +.....+....+
T Consensus 62 -~----------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v 130 (218)
T 3k0w_A 62 -G----------NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKL 130 (218)
T ss_dssp -C----------CSSEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEE
T ss_pred -C----------CCCEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceee
Confidence 0 1228999999999999999999876332 4446777775531 111223345678
Q ss_pred cCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEE
Q psy7941 151 PEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLM 230 (238)
Q Consensus 151 ~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~ 230 (238)
..|+.+.|.|.+.+.|.+.+.|++ ++..+.. .....|.|.++..+|.|.|+|.|.|..|...+..+.
T Consensus 131 ~~G~~v~L~C~~~g~p~~~v~W~~-~~~~~~~------------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~ 197 (218)
T 3k0w_A 131 MPGSTLVLQCVAVGSPIPHYQWFK-NELPLTH------------ETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE 197 (218)
T ss_dssp CTTCCEEEECEEEBSSCCEEEEEE-TTEECTT------------CCSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEE
T ss_pred cCCCcEEEEEEecccCCCeEEEEE-CCEECCC------------CCCCEEEEeecChhcCEEEEEEEEcCCCCceeeeEE
Confidence 899999999999999999999999 5544321 123479999999999999999999999876788888
Q ss_pred EEEEe
Q psy7941 231 LHVHC 235 (238)
Q Consensus 231 l~V~~ 235 (238)
|.|..
T Consensus 198 l~V~~ 202 (218)
T 3k0w_A 198 IIIDE 202 (218)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 88865
No 28
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=99.93 E-value=1.8e-24 Score=176.09 Aligned_cols=182 Identities=18% Similarity=0.219 Sum_probs=129.9
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee--eEeecCccEE
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE--HVITNNARLS 91 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~ 91 (238)
++..+.+.+|+++.|.|.+.. +.|.+.++|++++..+...... ..+. ..+..
T Consensus 233 ~p~~~~v~~G~~v~L~C~~~~-------------------------g~p~p~i~W~k~g~~l~~~~~~~~~~~~-~~~~~ 286 (527)
T 3qs9_E 233 TLPQLFLKVGEPLWIRCKAVH-------------------------VNHGFGLTWELENKALEEGNYFEMSTYS-TNRTM 286 (527)
T ss_dssp SCCEEEECTTSCEEEEEEEEE-------------------------SSSCCCEEEECSSSCCCGGGEEEEEEEE-TTTEE
T ss_pred CCCceEEeCCCeEEEEEEEcc-------------------------CCCCeEEEEEECCEECCCCceeeeeeec-cCcce
Confidence 566888999999999999952 3456789999987654321100 0011 11111
Q ss_pred EEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCeEE
Q psy7941 92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKIT 171 (238)
Q Consensus 92 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~ 171 (238)
. ...+|.|.+++.+|+|.|+|.+.|. ....+.|.|..+|.+..........+.+|+.+.|.|.+.|+|.|.+.
T Consensus 287 ~-----~~~~L~I~~v~~~DsG~Y~C~a~N~--~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~ 359 (527)
T 3qs9_E 287 I-----RILFAFVSSVARNDTGYYTCSSSKH--PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCT 359 (527)
T ss_dssp E-----EEEEEEESSCCGGGCEEEEEEETTE--EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEE
T ss_pred e-----eEEEEEEccCCcccCeEEEEEEEeC--CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEE
Confidence 1 1227999999999999999999776 55667788877776554333344667889999999999999999999
Q ss_pred EEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 172 WRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 172 W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
|++ ++..+..... ....+..|.|.++..+|+|.|+|.|.|..|.. +.++.|.|..+|
T Consensus 360 W~k-~g~~l~~~~~-------~~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~-~~~~~L~V~~~P 416 (527)
T 3qs9_E 360 WTF-SRKSFPCEQK-------GLDNGYSISKFCNHKHQPGEYIFHAENDDAQF-TKMFTLNIRRKP 416 (527)
T ss_dssp EEE-TTEEEECBCC-------BCSSSSEEEEECCCTTCCSCEEEEEEETTEEE-EEEEEEC--CCC
T ss_pred EEE-CCEECcCCcc-------cccCCcEEEEecCCcccCEEEEEEEEeCCCcE-EEEEEEEEecCC
Confidence 999 6665543221 11245579999999999999999999999944 778899998877
No 29
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=99.93 E-value=2.9e-24 Score=163.50 Aligned_cols=188 Identities=22% Similarity=0.354 Sum_probs=130.1
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
..+|.|...+..+.+.+|+++.|.|.+.+ .|.+.+.|++++..+.
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g--------------------------~p~~~i~W~k~g~~i~--------- 48 (304)
T 2yd9_A 4 EEPPRFIKEPKDQIGVSGGVASFVCQATG--------------------------DPKPRVTWNKKGKKVN--------- 48 (304)
T ss_dssp CCCCEEEECCCCEEEETTSCEEEEEEEEC--------------------------SSCCEEEEC----------------
T ss_pred ccCCeeeecCCceEecCCCeEEEEEEEEE--------------------------eCCCeEEEEECCEECC---------
Confidence 46899999999999999999999999853 3466799999876542
Q ss_pred cCccEEEEE-cCCCeEEEEEcccCc-ccCeEEEEEEecCCC-cceeeEEEEEcCCc-----ccccccCCceeecCCCcEE
Q psy7941 86 NNARLSVTH-NDANTWTLNIRSVRR-EDRGYYMCQVNTNPM-TKQMAFLEVVIPPD-----ISSEETSGDMMVPEGGSAK 157 (238)
Q Consensus 86 ~~~~~~~~~-~~~~~~~L~i~~~~~-~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~-----~~~~~~~~~~~~~~g~~~~ 157 (238)
..++.... .......|.|.+++. +|+|.|+|.+.+... ....+.|.|..++. +.+...+....+..|+.+.
T Consensus 49 -~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~ 127 (304)
T 2yd9_A 49 -SQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTAT 127 (304)
T ss_dssp -CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEEECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEE
T ss_pred -CCceEEEEecCCCceEEEEecccccCCCeEEEEEEECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEE
Confidence 23343332 222345899999998 999999999987533 44566777775422 1112224456788899999
Q ss_pred EEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941 158 LVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233 (238)
Q Consensus 158 l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V 233 (238)
|.|.+.|.|.+.+.|++ ++..+.... .........++.|.|.++..+|.|.|+|.|.|..|...+....+.|
T Consensus 128 l~C~~~g~p~~~v~W~k-~~~~~~~~~---~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v 199 (304)
T 2yd9_A 128 MLCAASGNPDPEITWFK-DFLPVDPSA---SNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYV 199 (304)
T ss_dssp ECCEEECSSCCEEEEEE-TTEECCGGG---GTTSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred EEEECccCCCCeEEEEE-CCEECcCCC---CcceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEE
Confidence 99999999999999999 554443211 1112223345589999999999999999999999855444345555
No 30
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=99.93 E-value=6.1e-24 Score=160.57 Aligned_cols=200 Identities=22% Similarity=0.395 Sum_probs=136.6
Q ss_pred EEecCCEEEEeEEecCCCceeeeeeeeee--------------eecCCeEEeccC---CCCceEEEEeCCceeeeeeeee
Q psy7941 20 IAQGRDAIFTCVVNNLGGHRVSSSVTDTH--------------VNTGGSIVFPTD---SSAMKVAWIKADTKAVLAIHEH 82 (238)
Q Consensus 20 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~---~~~~~~~W~~~~~~~~~~~~~~ 82 (238)
+...|.+.|.|.+.+..+...+..+.+.+ +..|+.+.+.|. .|.+.+.|++++..+...
T Consensus 67 ~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~---- 142 (291)
T 2wim_A 67 ANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTI---- 142 (291)
T ss_dssp CCGGGCEEEEEEEECSSSCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBC----
T ss_pred CCcccCEEEEEEEecccCceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCcccccc----
Confidence 55789999999999877665443333322 456777777765 578899999987654321
Q ss_pred EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc---ceeeEEEEEcCCcccccccCCceeecCCCcEEEE
Q psy7941 83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT---KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLV 159 (238)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~ 159 (238)
...++...... +|.|.+++.+|+|.|+|.+.+.... .....+.+..+|.+..........+.+|+.+.|.
T Consensus 143 ---~~~~~~~~~~~----~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~ 215 (291)
T 2wim_A 143 ---SDNRFAMLANN----NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFS 215 (291)
T ss_dssp ---CCSSEEECTTS----CEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEE
T ss_pred ---CCceEEEccCC----CEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEE
Confidence 12333332221 7999999999999999999775422 2344567777777654333224567889999999
Q ss_pred EEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 160 CKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 160 C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
|.+.|.|.|.+.|++ ++..+.... .......+..|.|.++..+|.|.|+|.|.|..|.. ++++.|.|..+|
T Consensus 216 C~~~g~p~p~v~W~~-~g~~~~~~~-----~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~v~~~~ 286 (291)
T 2wim_A 216 CRASGSPEPAISWFR-NGKLIEENE-----KYILKGSNTELTVRNIINSDGGPYVCRATNKAGED-EKQAFLQVFVQH 286 (291)
T ss_dssp CBCCCBSCCEEEEEE-TTEECCCTT-----TEEECSTTCEEEEESCCSTTCEEEEEEEEETTEEE-EEEEEEEC----
T ss_pred EEeecCCCCeEEEEE-CCEECcCCc-----cEEEcCCccEEEEeeCCcccCEEEEEEEEECCCce-eeeEEEEEEEec
Confidence 999999999999999 555443211 11112234579999999999999999999999944 888888888765
No 31
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=99.92 E-value=1.9e-23 Score=157.40 Aligned_cols=182 Identities=20% Similarity=0.410 Sum_probs=130.6
Q ss_pred ccceecc-CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 8 EPDFLYP-LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 8 ~p~~~~~-~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
+|.+... .....+.+|+.+.|.|.+.+ .|.+.+.|++++..+..
T Consensus 98 ~p~~~~~~~~~~~v~~g~~~~l~C~~~g--------------------------~p~~~v~W~~~~~~~~~--------- 142 (284)
T 2rik_A 98 PPRFIKKLEPSRIVKQDEHTRYECKIGG--------------------------SPEIKVLWYKDETEIQE--------- 142 (284)
T ss_dssp CCEEEECCCSEEEEETTCCEEEEEEEES--------------------------SSCCEEEEEETTEECCC---------
T ss_pred CCcccccCCCceEecCCceEEEEEEEee--------------------------eCCCEEEEEECCEECcC---------
Confidence 4555433 44566889999999999853 34677999998765432
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccc
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY 165 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~ 165 (238)
..++..... .....|.|.+++.+|+|.|+|.+.+.. .....+.|.|..+|.+... +....+..|+.+.|.|.+.|.
T Consensus 143 ~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~--~~~~~~~~g~~v~l~C~~~g~ 219 (284)
T 2rik_A 143 SSKFRMSFV-ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKK--PHPVETLKGADVHLECELQGT 219 (284)
T ss_dssp SSSEEEEEE-TTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSC--CCCEEECTTCCEEEEEECBSS
T ss_pred CCcEEEEEc-CCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeC--CCcceecCCCeEEEEEEEEec
Confidence 223332221 234489999999999999999998753 3455667888887776543 344678899999999999999
Q ss_pred cCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941 166 PTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 166 p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
|.+.+.|++ ++..+.... ....... ...|.|.++..+|.|.|+|.|.|..|.. +.++.|.|.
T Consensus 220 p~~~v~W~~-~~~~~~~~~-----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~ 283 (284)
T 2rik_A 220 PPFQVSWHK-DKRELRSGK-----KYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSY-TCVGSITLK 283 (284)
T ss_dssp SCCEEEEEE-TTEEECBTT-----TEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEC
T ss_pred CCCEEEEEE-CCEECcCCC-----CEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCce-eEEEEEEEc
Confidence 999999999 555443211 1111111 2478999999999999999999999944 777777774
No 32
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.92 E-value=1.1e-24 Score=159.18 Aligned_cols=195 Identities=21% Similarity=0.338 Sum_probs=130.9
Q ss_pred cccceeccC----ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee
Q psy7941 7 FEPDFLYPL----ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH 82 (238)
Q Consensus 7 ~~p~~~~~~----~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~ 82 (238)
.+|.|...+ ..+.+.+|+++.|.|.+.. .|.+.+.|++++..+..
T Consensus 14 ~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~--------------------------~p~~~v~W~~~~~~~~~----- 62 (231)
T 3ojm_B 14 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGG--------------------------NPMPTMRWLKNGKEFKQ----- 62 (231)
T ss_dssp EEEEESCGGGGCCSCEEEETTSCEEEECCEEE--------------------------ESCCEEEEEETTEECCG-----
T ss_pred cCCccccccccCceeEEEccCCCEEEEEeccc--------------------------CCCCeEEEEECCccccc-----
Confidence 467776555 7888999999999999863 23567999998765421
Q ss_pred EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCc---ccccccCCceeecCCCcEEE
Q psy7941 83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPD---ISSEETSGDMMVPEGGSAKL 158 (238)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~---~~~~~~~~~~~~~~g~~~~l 158 (238)
..++..........+|.|.+++.+|+|.|+|.+.+.. .......+.|...+. ......+....+..|+.+.|
T Consensus 63 ----~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l 138 (231)
T 3ojm_B 63 ----EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEF 138 (231)
T ss_dssp ----GGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEE
T ss_pred ----cccccceeeecCcceEEEecCCcccCEEEEEEEecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEE
Confidence 1111000011122389999999999999999997753 334455677765332 11222245567889999999
Q ss_pred EEEEccccCCeEEEEeC---CCeeeEeecCCCCC----cceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEE
Q psy7941 159 VCKAKGYPTPKITWRRE---DNKEIIVRSNPPSS----QKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLML 231 (238)
Q Consensus 159 ~C~~~~~p~~~~~W~~~---~~~~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l 231 (238)
.|.+.+.|.+.+.|+++ ++..+......... ..........|.|.++..+|.|.|+|.|.|..|.. +.++.|
T Consensus 139 ~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l 217 (231)
T 3ojm_B 139 VCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQA-NQSAWL 217 (231)
T ss_dssp ECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEE
T ss_pred EEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceE-eeEEEE
Confidence 99999999999999983 22222111000000 00001123469999999999999999999999954 888899
Q ss_pred EEEeec
Q psy7941 232 HVHCTY 237 (238)
Q Consensus 232 ~V~~~p 237 (238)
.|..+|
T Consensus 218 ~V~~~p 223 (231)
T 3ojm_B 218 TVLPKQ 223 (231)
T ss_dssp EEECCC
T ss_pred EEecCC
Confidence 998766
No 33
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.92 E-value=1.4e-24 Score=157.28 Aligned_cols=195 Identities=22% Similarity=0.336 Sum_probs=131.3
Q ss_pred CCCccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee
Q psy7941 3 PVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH 82 (238)
Q Consensus 3 ~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~ 82 (238)
.....+|.|...+..+.+.+|+++.|.|.+.+ .|.+.+.|++++..+....
T Consensus 4 ~~~~~~P~i~~~p~~~~v~~G~~v~L~C~~~g--------------------------~p~~~v~W~~~g~~~~~~~--- 54 (217)
T 2vr9_A 4 AGQYQSPRIIEHPTDLVVKKNEPATLNCKVEG--------------------------KPEPTIEWFKDGEPVSTNE--- 54 (217)
T ss_dssp --CCCCCEEEECCCCEEECTTSCEEECCEEEC--------------------------SSCCEEEEEETTEECCCSS---
T ss_pred ccccCCCEEecCCCceEEeCCCcEEEEEEcCC--------------------------CCCCeEEEEECCcCccCCC---
Confidence 44567899999999999999999999999963 3456799999876543211
Q ss_pred EeecCccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEc-CCcccccccCCceeecCCCcEEE
Q psy7941 83 VITNNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVI-PPDISSEETSGDMMVPEGGSAKL 158 (238)
Q Consensus 83 ~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~-~~~~~~~~~~~~~~~~~g~~~~l 158 (238)
........... ..+.|.|.+++.+|+|.|+|.+.+.... ...+.+.|.. ++.+.. .+....+..|+.+.|
T Consensus 55 ----~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~--~~~~~~~~~g~~v~l 128 (217)
T 2vr9_A 55 ----KKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRV--EPKDTRVAKGETALL 128 (217)
T ss_dssp ----SSSSEEECTTSCEEESSCCBSSSCBCCEEEEEEEEETTEEEECCCEEEEECEECCSCSB--CCCCEEECTTSCEEE
T ss_pred ----ccceeEEecCCceEEEEEeccCCcccCceEEEEEecCCCccccccceEEEEEeCCCcEE--CCCccEEcCCCeEEE
Confidence 00111111111 1123478899999999999999875432 2345566654 333332 234567889999999
Q ss_pred EEEE-ccccCCeEEEEeCCCeeeEeecCC--CCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941 159 VCKA-KGYPTPKITWRREDNKEIIVRSNP--PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233 (238)
Q Consensus 159 ~C~~-~~~p~~~~~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V 233 (238)
.|.+ .+.|.+.+.|++ ++..+...... ...........+.|.|.++..+|.|.|+|.|.|..|...+....|.+
T Consensus 129 ~C~~~~g~p~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~ 205 (217)
T 2vr9_A 129 ECGPPKGIPEPTLIWIK-DGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV 205 (217)
T ss_dssp CCBCCCEESCCEEEEEE-TTEEECCCCCC---CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEE
T ss_pred EEECCCCCCCCeEEEEE-CCcCCCcccccccccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEE
Confidence 9999 889999999999 55544321110 01122233455689999999999999999999999966455555544
No 34
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.92 E-value=1e-24 Score=153.08 Aligned_cols=170 Identities=22% Similarity=0.264 Sum_probs=126.7
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCC-ceEEEEeCCceeeeeeeeeEee
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA-MKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
.+|.+...+..+.+.+|+++.|.|.+... +. ..+.|++++..+..
T Consensus 3 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~--------------------------~~~~~i~W~~~~~~~~~-------- 48 (176)
T 1f2q_A 3 QKPKVSLNPPWNRIFKGENVTLTCNGNNF--------------------------FEVSSTKWFHNGSLSEE-------- 48 (176)
T ss_dssp -CCCCEEESSCSEEETTCCEEEECCTTCC------------------------------CCEEEETTEECSC--------
T ss_pred CCCEEEcCCCCcceecCCcEEEEEeCCCC--------------------------CCcceEEEEECCeECCC--------
Confidence 46888888888899999999999998532 22 35899998754321
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEc-c
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK-G 164 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~ 164 (238)
...+|.|.+++.+|+|.|+|.+.+.. ....+.+.|..++.... .....+.+|+.+.|.|.+. +
T Consensus 49 ------------~~~~L~i~~v~~~d~G~Y~C~~~~~~-~s~~~~l~V~~~~~~~~---~~~~~~~~g~~~~l~C~~~~~ 112 (176)
T 1f2q_A 49 ------------TNSSLNIVNAKFEDSGEYKCQHQQVN-ESEPVYLEVFSDWLLLQ---ASAEVVMEGQPLFLRCHGWRN 112 (176)
T ss_dssp ------------CSSEEEECSCCGGGCEEEEEECTTSS-CCCCEEEEEECSSEEEE---ESCSEEETTSCEEEEEEEGGG
T ss_pred ------------CceEEEEeccceecCEEEEEEcCCcc-ccccEEEEEeCcceeec---CCcceeeCCCCEEEEEEecCC
Confidence 11299999999999999999997643 34566777774443322 1224677999999999995 5
Q ss_pred ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeecC
Q psy7941 165 YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTYL 238 (238)
Q Consensus 165 ~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p~ 238 (238)
.|.+.+.|++ ++..+.. ...+..|.|.++..+|+|.|+|.|.|..+...+..+.|.|..+|.
T Consensus 113 ~p~~~~~W~~-~g~~~~~-----------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~ 174 (176)
T 1f2q_A 113 WDVYKVIYYK-DGEALKY-----------WYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR 174 (176)
T ss_dssp CCEEEEEEEE-TTEECCS-----------CCCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred CCceEEEEEE-CCEEEee-----------ecCCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence 6777999999 5554421 123457999999999999999999998665667889999998873
No 35
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=99.92 E-value=1.3e-23 Score=160.64 Aligned_cols=199 Identities=14% Similarity=0.159 Sum_probs=134.4
Q ss_pred EEecCCEEEEeEEecCCCceeeeeeeeee--------------eecCCeEEec----cCCCCceEEEEeCCceeeeeeee
Q psy7941 20 IAQGRDAIFTCVVNNLGGHRVSSSVTDTH--------------VNTGGSIVFP----TDSSAMKVAWIKADTKAVLAIHE 81 (238)
Q Consensus 20 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~----~~~~~~~~~W~~~~~~~~~~~~~ 81 (238)
+...|.+.|.|.+.+......+..+.+.+ +..+....+. .+.|.+.+.|++++..+.... .
T Consensus 86 v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~-~ 164 (313)
T 4fqp_A 86 LRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTS-Q 164 (313)
T ss_dssp CCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEE-E
T ss_pred CChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCccccccc-e
Confidence 56789999999886544433333333332 2223333332 357899999999876654322 2
Q ss_pred eEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-c--ceeeEEEEEcCCcccccccCCceeecCCCcEEE
Q psy7941 82 HVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-T--KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKL 158 (238)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~--~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l 158 (238)
.....++.+...+ .|.|.+....|+|.|+|.+.+... . ...+.|.|..+|.+.... .....+..|+.+.|
T Consensus 165 ~~~~~~~~~~~~s------~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~-~~~~~~~~g~~v~l 237 (313)
T 4fqp_A 165 VPGFLSGTVTVTS------LWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISG-YDNNWYLGQNEATL 237 (313)
T ss_dssp EECSSTTCEEEEE------EEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEEC-CCSCEETTCCCEEE
T ss_pred eeeecccccccce------eeeecccccccCeeEEEEEEccCcCccceeeeecccccCCcccccc-ccceeecCCCeEEE
Confidence 2222334444433 799999999999999999987532 2 223345555566554322 23345677899999
Q ss_pred EEEEccccCC-eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 159 VCKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 159 ~C~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
.|.+.|.|.| .+.|+++ +..+.. .....++.|.|.++..+|+|.|+|.|.|..|.. +.++.|.|.++|
T Consensus 238 ~C~~~g~P~p~~v~W~~~-~~~l~~---------~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~~P 306 (313)
T 4fqp_A 238 TCDARSNPEPTGYNWSTT-MGPLPP---------FAVAQGAQLLIRPVDKPINTTLICNVTNALGAR-QAELTVQVKEGP 306 (313)
T ss_dssp EEEEEEESCCCEEEEEET-TBSCCT---------TEEEETTEEEECCCSSCCEEEEEEEEECSSCEE-EEEEEEEEECCC
T ss_pred EEEecCCCCCcEEEEEEC-CEECCC---------ceEEeCCEEEECcCChhhCEEEEEEEEeCCCcE-EEEEEEEEEeCC
Confidence 9999999999 6999994 443321 123345689999999999999999999999954 888999998765
No 36
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=99.92 E-value=2.1e-24 Score=163.14 Aligned_cols=188 Identities=24% Similarity=0.455 Sum_probs=132.4
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN 87 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 87 (238)
+|.+...+....+.+|+++.|.|.+.+ .|.+.+.|++++..+... .+
T Consensus 100 ~~~~~~~~~~~~~~~g~~v~l~C~~~~--------------------------~p~~~v~W~~~~~~~~~~-------~~ 146 (291)
T 1qz1_A 100 KLMFKNAPTPQEFKEGEDAVIVCDVVS--------------------------SLPPTIIWKHKGRDVILK-------KD 146 (291)
T ss_dssp CSEEEECCSSEEEETTSCEEECCEEEC--------------------------SSCCEEEEEETTSCSSTT-------CC
T ss_pred cccccCCCCcccccCCCeEEEEEEecc--------------------------CCCCEEEEEECCEEcccC-------CC
Confidence 566677777888999999999999853 346679999987654321 12
Q ss_pred ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-C--cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-M--TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG 164 (238)
Q Consensus 88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~ 164 (238)
.++..... ..|.|.+++.+|+|.|+|.+.+.. . ......+.|..+|.+..........+..|+.+.|.|.+.|
T Consensus 147 ~~~~~~~~----~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g 222 (291)
T 1qz1_A 147 VRFIVLSN----NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADG 222 (291)
T ss_dssp TTEEECTT----SCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEE
T ss_pred ceEEEccC----CcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEE
Confidence 23322221 279999999999999999997643 2 2234456666666655433333456889999999999999
Q ss_pred ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEe
Q psy7941 165 YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHC 235 (238)
Q Consensus 165 ~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~ 235 (238)
.|.|.+.|++ ++..+...... ............|.|.++..+|.|.|+|.|.|..|. .+.++.|.|..
T Consensus 223 ~p~p~i~W~~-~g~~~~~~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~-~~~~~~l~V~~ 290 (291)
T 1qz1_A 223 FPEPTMSWTK-DGEPIENEEED-DEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGE-QDASIHLKVFA 290 (291)
T ss_dssp ESCCEEEEEE-TTEECCCC--C-CSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEC
T ss_pred eCCCcEEEEE-CCEECcCCCCC-CcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCc-eEEEEEEEEEc
Confidence 9999999999 55544322100 001111222457999999999999999999999994 47888888864
No 37
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.92 E-value=1.4e-23 Score=153.15 Aligned_cols=191 Identities=19% Similarity=0.327 Sum_probs=118.0
Q ss_pred ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee--eeEe------
Q psy7941 13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH--EHVI------ 84 (238)
Q Consensus 13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~--~~~~------ 84 (238)
.+.+.+.+.+|+++.|.|.+...... ....++|+|++........ ....
T Consensus 9 ~P~~pV~v~~G~~v~L~C~v~~~~~~-----------------------~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~ 65 (226)
T 4f80_A 9 GPSGPILAMVGEDADLPCHLFPTMSA-----------------------ETMELKWVSSSLRQVVNVYADGKEVEDRQSA 65 (226)
T ss_dssp CCSSCEEEETTSCEEEEEEEESCCCC-----------------------TTSEEEEEETTTCCEEEEEETTEECGGGSCT
T ss_pred CCCCCEEEEcCCcEEEEEEEECCCCC-----------------------CceEEEEEECCCCceEEEEeCCeEcccccCc
Confidence 45567899999999999998642211 1335899987654332111 1100
Q ss_pred ecCccEEEEEc--CCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEE
Q psy7941 85 TNNARLSVTHN--DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKA 162 (238)
Q Consensus 85 ~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~ 162 (238)
....|+..... ..+.++|.|.+++.+|+|.|+|.+.+... ...+.+.+..++..... .....+.+|..+.|.|.+
T Consensus 66 ~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~-~~~~~v~~~~~~~~~~~--~~~~~~~~g~~v~l~c~~ 142 (226)
T 4f80_A 66 PYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDF-YEKALVELKVAALGSDL--HVDVKGYKDGGIHLECRS 142 (226)
T ss_dssp TTTTTEEEECTTGGGTEEEEEESSCCGGGCEEEEEEEEETTE-EEEEEEEEEEEBCCCCC--EEEEEEEETTEEEEEEEE
T ss_pred cccceEEEecccccCCeEEEEEeeCchHHCeeEEEEEECCCc-EEEEEEEEeeccceecc--cceeeeccCCceeeEEEe
Confidence 11234443332 22567999999999999999999987543 33444555543333221 233557789999999999
Q ss_pred cc-ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeec---eEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEe
Q psy7941 163 KG-YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE---VLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHC 235 (238)
Q Consensus 163 ~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~ 235 (238)
.| .|.|.++|+++++..+..... ......++ .+.+..+..+|.|.|+|.|.|..|. ..+++.|.|..
T Consensus 143 ~g~~P~p~i~W~k~~~~~~~~~~~-----~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~-~~~~~~v~v~e 213 (226)
T 4f80_A 143 TGWYPQPQIQWSNNKGENIPTVEA-----PVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLG-LEKTASISIAD 213 (226)
T ss_dssp EEEBSCCEEEEECTTSCBCCCEEC-----CCEECTTSCEEEEEEEEECC----CEEEEEEETTTT-EEEEEEECCCT
T ss_pred ccCCCCCEEEEEECCceEcCCCce-----EEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCC-eEEEEEEEECC
Confidence 88 699999999966554432211 11111111 2334567889999999999999994 47777777754
No 38
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=99.92 E-value=5.4e-24 Score=175.27 Aligned_cols=189 Identities=25% Similarity=0.387 Sum_probs=137.2
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
.+|.|...+..+.+.+|+++.|.|.+.+ .|++.++|+|++..+. .
T Consensus 196 ~pp~~~~~p~~~~v~~G~~~~l~C~~~g--------------------------~p~p~i~W~k~g~~i~---------~ 240 (570)
T 3b43_A 196 VPPFFDLKPVSVDLALGESGTFKCHVTG--------------------------TAPIKITWAKDNREIR---------P 240 (570)
T ss_dssp CCCEEEECCCCBCCBSBSCEEEEEEEES--------------------------SSCCEEEEEETTEECC---------T
T ss_pred CCCccccCCceeEecCCCeEEEEEEEEE--------------------------CCCCEEEEEECCEECc---------C
Confidence 4677777788888999999999999963 4467899999876532 2
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccc
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY 165 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~ 165 (238)
..++.+... ....+|.|.+++.+|+|.|+|.+.|.. .....+.|.|..+|.+.... .....+.+|+.+.|.|.+.|.
T Consensus 241 ~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~-~~~~~v~~g~~~~l~C~~~g~ 318 (570)
T 3b43_A 241 GGNYKMTLV-ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKL-EPSRIVKQDEHTRYECKIGGS 318 (570)
T ss_dssp TSSEEEEEE-TTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBCCCEEEECC-CSBCCEESSCEEEEEEEEESS
T ss_pred CCcEEEEEE-CCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeecCCcccccC-CCccEEcCCCcEEEEEEEeeC
Confidence 233333221 223489999999999999999998753 34455667777777654322 223456789999999999999
Q ss_pred cCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 166 PTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 166 p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
|.|.+.|++ ++..+.... ............|.|.++..+|+|.|+|.|.|..|.. +.++.|.|..+|
T Consensus 319 P~p~v~W~k-~~~~l~~~~---~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~-~~~~~l~V~~~P 385 (570)
T 3b43_A 319 PEIKVLWYK-DETEIQESS---KFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA-SSSTSLKVKEPP 385 (570)
T ss_dssp SSCEEEEEE-TTEECCCSS---SEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCC-EEEEEECEECCC
T ss_pred CCCEEEEeE-CCEECCCCC---cEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEE-EEEEEEEecCCC
Confidence 999999999 554442211 0011111223479999999999999999999999954 778889998877
No 39
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.92 E-value=1.9e-23 Score=149.78 Aligned_cols=181 Identities=14% Similarity=0.165 Sum_probs=119.2
Q ss_pred ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEc
Q psy7941 16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHN 95 (238)
Q Consensus 16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (238)
..+.+.+|+++.|.|.+.+ .|.+.+.|++...... .++...
T Consensus 9 ~~~~~~~G~~v~L~C~~~g--------------------------~P~p~i~W~~~~~~~~----------~~~~~~--- 49 (202)
T 1vca_A 9 SRYLAQIGDSVSLTCSTTG--------------------------CESPFFSWRTQIDSPL----------NGKVTN--- 49 (202)
T ss_dssp SEEEEETTSCEEEEEEEES--------------------------CSSCEEEEEETTCCCC----------SSEEEE---
T ss_pred CcEEEcCCCcEEEEEeecC--------------------------CCCCeEEEECCCCCCc----------cceEEE---
Confidence 3445569999999999963 3466799998432211 011110
Q ss_pred CCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccc-cC--CeEE
Q psy7941 96 DANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY-PT--PKIT 171 (238)
Q Consensus 96 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~--~~~~ 171 (238)
.....+|.|.+++.+|+|.|+|.+.+... ....+.|.|..+|........ ..+.+|+.+.|.|.+.+. |. +.+.
T Consensus 50 ~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~~~~~~~--~~~~~G~~~~L~C~~~~~~p~~~~~i~ 127 (202)
T 1vca_A 50 EGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLS--GPLEAGKPITVKCSVADVYPFDRLEID 127 (202)
T ss_dssp ETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEEBCCSCCEEEES--SCEETTSCEEEEEEEEEEBSGGGEEEE
T ss_pred cCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEEEEeCCCCCEeCCc--eEEcCCCCEEEEEEECCcCCCCCeEEE
Confidence 11234799999999999999999987633 344567888877654332222 457889999999999875 43 3799
Q ss_pred EEeCCCeeeEeecCCCCC-cceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC------ccceEEEEEEeecC
Q psy7941 172 WRREDNKEIIVRSNPPSS-QKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT------VSKRLMLHVHCTYL 238 (238)
Q Consensus 172 W~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~------~~~~~~l~V~~~p~ 238 (238)
|++ ++..+......... ..........|.+.....+|.|.|+|.|.|..|.. ...++.|.|+++|.
T Consensus 128 W~k-~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~ 200 (202)
T 1vca_A 128 LLK-GDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK 200 (202)
T ss_dssp EEE-TTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred EEe-CCeECcccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence 999 55555432211100 00011223346677777888899999999998742 35688999999983
No 40
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=99.92 E-value=2.6e-24 Score=169.05 Aligned_cols=171 Identities=25% Similarity=0.407 Sum_probs=127.0
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEE
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT 93 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (238)
.+..+.+.+|+++.|.|.+.+ .|.|.+.|+++++..... ..+ .
T Consensus 211 ~~~~~~~~~G~~v~l~C~~~g--------------------------~P~p~i~W~k~~~~~~~~--------~~~--~- 253 (384)
T 3kld_A 211 FPETVPAEKGTTVKLECFALG--------------------------NPVPTILWRRADGKPIAR--------KAR--R- 253 (384)
T ss_dssp CCSEEEEETTSCEEEEEEEEE--------------------------ESCCEEEEEETTCCCCCT--------TCE--E-
T ss_pred CCCceEecCCCcEEEEEEEee--------------------------cCCCcEEEEeCCCccccc--------cce--e-
Confidence 356778889999999999853 456789999976543211 111 1
Q ss_pred EcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCeEEE
Q psy7941 94 HNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITW 172 (238)
Q Consensus 94 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W 172 (238)
.....+|.|.+++.+|+|.|+|.+.|.. .....+.|.|..+|.+... .....+..|+.+.|.|.+.|.|.|.+.|
T Consensus 254 --~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~~--~~~~~v~~g~~v~l~C~~~g~P~p~i~W 329 (384)
T 3kld_A 254 --HKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQI--INDIHVAMEESVFWECKANGRPKPTYRW 329 (384)
T ss_dssp --CTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEC--CCCEEECTTCCEEEECEEEEESCCEEEE
T ss_pred --cCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCccccC--CCceEecCCCCEEEEeECCccCCCeEEE
Confidence 1112389999999999999999998763 3445667888777765432 3456788999999999999999999999
Q ss_pred EeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941 173 RREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
++ ++..+... .. ....++.|.|..+..+|+|.|+|.|.|..|.. ..++.|.|.
T Consensus 330 ~k-~g~~l~~~------~~-~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~-~~~a~L~V~ 382 (384)
T 3kld_A 330 LK-NGDPLLTR------DR-IQIEQGTLNITIVNLSDAGMYQCVAENKHGVI-FSSAELSVI 382 (384)
T ss_dssp EE-TTEECCCB------TT-EEEETTEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEC
T ss_pred EE-CCEECCCC------cc-EEEeCCEEEEeecChhhCEEEEEEEEeCCceE-EeceEEEEe
Confidence 99 55544321 11 12345689999999999999999999999944 777778775
No 41
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.92 E-value=8.6e-24 Score=150.94 Aligned_cols=182 Identities=18% Similarity=0.217 Sum_probs=122.6
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
.+|.|...+.. .+.+|+++.|.|.+.. +.+.+.|+|++..+.......
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~---------------------------~~~~~~w~k~g~~~~~~~~~~---- 51 (196)
T 3p2t_A 4 PKPTLWAEPGS-VISWGNSVTIWCQGTL---------------------------EAREYRLDKEESPAPWDRQNP---- 51 (196)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCT---------------------------TCCEEEEEETTSCSCSEEECC----
T ss_pred CCCEEEccCCC-cCCCCCcEEEEeeCCC---------------------------CCCEEEEEECCCCCccccccc----
Confidence 57788777777 8899999999999853 245699999876543211000
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC---cceeeEEEEEcC---CcccccccCCceeecCCCcEEEEE
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM---TKQMAFLEVVIP---PDISSEETSGDMMVPEGGSAKLVC 160 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l~v~~~---~~~~~~~~~~~~~~~~g~~~~l~C 160 (238)
.......+|.|.+++.+|+|.|+|.+.+... .+..+.|.|... |.+.. .+ ...+.+|+.+.|.|
T Consensus 52 -------~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~--~~-~~~v~~G~~v~L~C 121 (196)
T 3p2t_A 52 -------LEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSA--LP-SPLVTSGKSVTLLC 121 (196)
T ss_dssp -------CSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEECSSCCCEEEE--ES-CSEECTTCCEEEEE
T ss_pred -------ccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCccEEEEecCCCCCCEEEe--CC-cceecCCCeEEEEE
Confidence 0012234899999999999999999987543 244556677643 22222 12 23578999999999
Q ss_pred EEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC----CCccceEEEEEE
Q psy7941 161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP----PTVSKRLMLHVH 234 (238)
Q Consensus 161 ~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g----~~~~~~~~l~V~ 234 (238)
.+.+. .+.+.|++++. .+..... ............|.|.++..+|+|.|+|.|.|..+ ...+..+.|.|.
T Consensus 122 ~~~~~-~~~~~w~k~g~-~~~~~~~--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~ 195 (196)
T 3p2t_A 122 QSRSP-MDTFLLCKERA-AHPLLCL--RSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIVS 195 (196)
T ss_dssp EEEEE-EEEEEEEETTC-CCGGGSE--EEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEEC
T ss_pred ecCCC-CCEEEEEeCCC-cccceee--cccccccCcceEEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEeC
Confidence 99874 46899999543 2211000 00011123455799999999999999999999876 455777877764
No 42
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=99.92 E-value=8e-24 Score=168.00 Aligned_cols=182 Identities=18% Similarity=0.251 Sum_probs=122.6
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee--eeEeecCccEE
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH--EHVITNNARLS 91 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~ 91 (238)
++....+.+|+++.|.|.+.+. .|.+.+.|++++..+..... ..... ..+..
T Consensus 233 ~~~~~~v~~G~~v~L~C~~~g~-------------------------~p~p~i~W~k~g~~l~~~~~~~~~~~~-~~~~~ 286 (423)
T 3qs7_E 233 TLPQLFLKVGEPLWIRCKAVHV-------------------------NHGFGLTWELENKALEEGNYFEMSTYS-TNRTM 286 (423)
T ss_dssp STTEEEEETTSCEEEEEEEEES-------------------------SSCCCEEEEESSSBCCGGGEEEEEEEE-TTTEE
T ss_pred CCCceEEeCCCeEEEEEEEEcC-------------------------CCCcEEEEEECCEEccccceeeccccc-CCcee
Confidence 4557789999999999999631 33567999998775422100 00011 11111
Q ss_pred EEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCeEE
Q psy7941 92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKIT 171 (238)
Q Consensus 92 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~ 171 (238)
.. ..+|.|.+++.+|+|.|+|.+.|. ....+.|.|..+|.+...+......+.+|+.+.|.|.+.|+|.|.+.
T Consensus 287 ~~-----~~~L~I~~v~~~D~G~Y~C~A~N~--~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~ 359 (423)
T 3qs7_E 287 IR-----ILFAFVSSVARNDTGYYTCSSSKH--PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCT 359 (423)
T ss_dssp EE-----EEEEEESSCCTTTCEEEEEEETTE--EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEE
T ss_pred EE-----EEEEEEeecCHHHCEEEEEEEecC--CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEE
Confidence 11 127999999999999999999776 66677888888877654433345678889999999999999999999
Q ss_pred EEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 172 WRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 172 W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
|++ ++..+........ ....+.......+|+|.|+|.|.|..|. .+.++.|.|..+|
T Consensus 360 W~k-~g~~l~~~~~~~~-------~~~~~~~~~~~~~D~G~YtC~A~N~~G~-~~~s~~L~v~~~p 416 (423)
T 3qs7_E 360 WTF-SRKSFPCEQKGLD-------NGYSISKFCNHKHQPGEYIFHAENDDAQ-FTKMFTLNIRSGT 416 (423)
T ss_dssp EEE-TTEEEECBCCBCS-------SSSEEEEECCCTTCCSCEEEEEEETTEE-EEEEEEEC-----
T ss_pred EEE-CCEECCCcccccc-------CCcEEEEEecccccCEEEEEEEEcCCce-EEEEEEEEEecCC
Confidence 999 5655543210000 0111222445678999999999999994 4889999988765
No 43
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.92 E-value=7.5e-25 Score=157.66 Aligned_cols=193 Identities=20% Similarity=0.337 Sum_probs=133.3
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-eeE--e
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-EHV--I 84 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~--~ 84 (238)
.+.|..++..+.+.+|+++.|.|.+.. .|.+.+.|++++........ ... .
T Consensus 4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~--------------------------~p~~~v~W~~~~~~~~~~~~~~~~~~~ 57 (209)
T 1nbq_A 4 SVTVHSSEPEVRIPENNPVKLSCAYSG--------------------------FSSPRVEWKFDQGDTTRLVCYNNKITA 57 (209)
T ss_dssp CCEEECSCSBCCEETTCCCEEECEEES--------------------------CSSEEEEEEEEETTEEEESEETTEECT
T ss_pred eEEEEcCCCceEEEcCCCEEEEEEEeC--------------------------CCCcEEEEEEcCCceeEEEEecCccCc
Confidence 456778888999999999999999863 24667999997655321110 000 1
Q ss_pred ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC---CcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEE
Q psy7941 85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP---MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCK 161 (238)
Q Consensus 85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~ 161 (238)
....|+.... .+|.|.+++.+|+|.|+|.+.+.. .......|.|..+|.+..... ...+..|+.+.|.|.
T Consensus 58 ~~~~r~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~--~~~~~~g~~~~l~C~ 130 (209)
T 1nbq_A 58 SYEDRVTFLP-----TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNI--PSSATIGNRAVLTCS 130 (209)
T ss_dssp TTTTTCEEET-----TEEECSCCCTTSCSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCCC--BSEEETTSCEEECCC
T ss_pred cccCceEeec-----cEEEEeeCCHHHCcEEEEEEecCCCCccceEEEEEEEecCCcCCCccc--ccceecCCEEEEEEe
Confidence 1234554443 389999999999999999997742 234456677887777654322 345788999999999
Q ss_pred E-ccccCCeEEEEeCCCeeeEeecCCC--C--CcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC-ccceEEEEEE
Q psy7941 162 A-KGYPTPKITWRREDNKEIIVRSNPP--S--SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT-VSKRLMLHVH 234 (238)
Q Consensus 162 ~-~~~p~~~~~W~~~~~~~~~~~~~~~--~--~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~-~~~~~~l~V~ 234 (238)
+ .+.|.+.+.|+++ +..+....... . .........+.|.|.++..+|.|.|+|.|.|..|.. .+..+.|.|.
T Consensus 131 ~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V~ 208 (209)
T 1nbq_A 131 EQDGSPPSEYTWFKD-GIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV 208 (209)
T ss_dssp CCSCBSCCEEEEEET-TCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred CCCCCCCceeEEEEC-CeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEEe
Confidence 7 8899999999994 44333211100 0 001111234589999999999999999999999965 4666767664
No 44
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=99.92 E-value=3.5e-23 Score=149.59 Aligned_cols=194 Identities=21% Similarity=0.307 Sum_probs=122.7
Q ss_pred ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe--------
Q psy7941 13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI-------- 84 (238)
Q Consensus 13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~-------- 84 (238)
..++.+.|.+|+++.|.|.+....+.. .+.+.|+|++............
T Consensus 4 ~~p~~vtv~~G~~v~L~C~v~~~~~~~-----------------------~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~ 60 (218)
T 4frw_A 4 ETSDVVTVVLGQDAKLPCFYRGDSGEQ-----------------------VGQVAWARVDAGEGAQELALLHSKYGLHVS 60 (218)
T ss_dssp ECCSEEEEETTSCEEECCEECCCTTCE-----------------------EEEEEEEEECSSSCEEEEEEEETTTEEEEC
T ss_pred eCCCeEEEEcCCCEEEEEEEEcCCCCC-----------------------ccEEEEEECCCCCCceeEEEecCCCCeEeC
Confidence 456788999999999999996533222 2358999976543221111100
Q ss_pred -ecCccEEEEEc--CCCeEEEEEcccCcccCeEEEEEEecCCCcce--eeEEEEEcCCcccccccCCceeecCCCcEEEE
Q psy7941 85 -TNNARLSVTHN--DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ--MAFLEVVIPPDISSEETSGDMMVPEGGSAKLV 159 (238)
Q Consensus 85 -~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~ 159 (238)
....|+..... ....++|.|.+++.+|+|.|.|.+.+...... ...+.+..++.... .......+..+..+.+.
T Consensus 61 ~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 139 (218)
T 4frw_A 61 PAYEGRVEQPPPPRNPLDGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSL-NPGPALEEGQGLTLAAS 139 (218)
T ss_dssp GGGTTTEECCSSCCCTTBCCEEESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEE-EECSCEETTCCSEEEEE
T ss_pred ccccceEEEecccccCCeEEEEEeeccHHHCCceeEEEEeccCceeeeEEEEEEeeecccee-eeeeeeeeeecccccee
Confidence 11223333221 22456899999999999999999866433222 22344444333322 22344567788999999
Q ss_pred EEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941 160 CKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 160 C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
|.+.+.|.|.+.|++++.......... ... .....+.|.|..+..+|.|.|+|.|.|..|.. ...+.+.|+
T Consensus 140 c~~~g~p~p~i~W~~~~~~~~~~~~~~-~~~--~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~-~~~~t~~v~ 210 (218)
T 4frw_A 140 CTAEGSPAPSVTWDTEVKGTTSSRSFK-HSR--SAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQ-DQRITHILH 210 (218)
T ss_dssp EEEEEBSCCEEEEEESSCCEEEEEEEE-CSS--SEEEEEEEEECCCGGGTTCEEEEEEECTTCSS-CEEEEEECC
T ss_pred eeccCCcCceEEEEECCcccccCceEe-cCC--cEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCe-EEEEEEEEE
Confidence 999999999999999544332221111 101 11223469999999999999999999999844 555555444
No 45
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=99.92 E-value=2e-23 Score=171.87 Aligned_cols=185 Identities=21% Similarity=0.418 Sum_probs=134.9
Q ss_pred ccceeccCc-eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 8 EPDFLYPLE-NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 8 ~p~~~~~~~-~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
+|.|..... ...+.+|+.+.|.|.+. +.|.+.+.|+|++..+..
T Consensus 290 ~p~~~~~~~~~~~v~~g~~~~l~C~~~--------------------------g~P~p~v~W~k~~~~l~~--------- 334 (570)
T 3b43_A 290 PPRFIKKLEPSRIVKQDEHTRYECKIG--------------------------GSPEIKVLWYKDETEIQE--------- 334 (570)
T ss_dssp CCEEEECCCSBCCEESSCEEEEEEEEE--------------------------SSSSCEEEEEETTEECCC---------
T ss_pred CCcccccCCCccEEcCCCcEEEEEEEe--------------------------eCCCCEEEEeECCEECCC---------
Confidence 566654433 34578999999999985 345778999998765432
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccc
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY 165 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~ 165 (238)
..++.+... .....|.|.+++.+|+|.|+|.+.|. +.....+.|.|..+|.+... +....+.+|+.+.|.|.+.|.
T Consensus 335 ~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~--~~~~~~~~G~~v~l~C~~~g~ 411 (570)
T 3b43_A 335 SSKFRMSFV-ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKK--PHPVETLKGADVHLECELQGT 411 (570)
T ss_dssp SSSEEEEEE-TTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECSC--CCCEEECTTCCEEEEEEEESS
T ss_pred CCcEEEEEE-CCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeecC--CCceeecCCCEEEEEEEEecC
Confidence 233333322 22348999999999999999999886 44556677888888876543 344677889999999999999
Q ss_pred cCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 166 PTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 166 p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
|.|.+.|++ ++..+... ........ ...|.|.++..+|.|.|+|.|.|..|.. +..+.|.|..+|
T Consensus 412 P~p~v~W~k-~g~~l~~~-----~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~v~~~P 478 (570)
T 3b43_A 412 PPFQVSWHK-DKRELRSG-----KKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSD-TCVGSITLKAPP 478 (570)
T ss_dssp SSCCCEEEE-TTEECCSS-----SSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEECCCC
T ss_pred CCCEEEEEE-CCEECcCC-----CCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeE-EEEEEEEeccCC
Confidence 999999999 55444211 11111111 2378999999999999999999999944 677788888776
No 46
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.92 E-value=6.8e-24 Score=149.92 Aligned_cols=172 Identities=18% Similarity=0.309 Sum_probs=121.5
Q ss_pred ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE-ee----cCccE
Q psy7941 16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV-IT----NNARL 90 (238)
Q Consensus 16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~----~~~~~ 90 (238)
+.+.+.+|+++.|.|.+.. .|.+.+.|++++........... .. ...|+
T Consensus 3 ~~v~~~~G~~v~L~C~~~~--------------------------~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~ 56 (184)
T 2ny1_B 3 KVVLGKKGDTVELTCTASQ--------------------------KKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRA 56 (184)
T ss_dssp CEEEEETTSCEEECCBCSS--------------------------SSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGE
T ss_pred CcEEEeCCCCEEEEEEEcC--------------------------CCceEEEEEeCCccceEEecCceEecCChhhCCcc
Confidence 3567899999999999852 34567999998764332211111 11 12344
Q ss_pred EEEEc--CCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCC
Q psy7941 91 SVTHN--DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP 168 (238)
Q Consensus 91 ~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~ 168 (238)
..... ..+..+|.|.+++.+|+|.|+|.+.+.. ..+.+.|...+ .+....+.+|+.+.|.|.+.+.|.|
T Consensus 57 ~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~---~~~~l~V~~~~------~~~~~~v~~g~~~~l~C~~~~~p~~ 127 (184)
T 2ny1_B 57 DSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQK---EEVQLLVFGLT------ANSDTHLLQGQSLTLTLESPPGSSP 127 (184)
T ss_dssp ECCGGGGGGTBCCEEECSCCGGGCEEEEEEETTEE---EEEEEEEEEEE------ESSCSEEETTCCEEEEEECCTTCCC
T ss_pred ccccccccCCeEEEEEecCCHHHCEEEEEEEEcCC---CcEEEEEEEec------CCCCceeecCCCEEEEEEcCCCCCC
Confidence 43321 2234579999999999999999996542 24456655311 1223467899999999999889999
Q ss_pred eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 169 KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 169 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
.+.|+++++.. ......|.|.++..+|.|.|+|.|.|..+ ..+..+.|.|...|
T Consensus 128 ~v~W~~~~~~~--------------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~-~~~~~~~l~V~~~p 181 (184)
T 2ny1_B 128 SVQCRSPRGKN--------------IQGGKTLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVVLAFQ 181 (184)
T ss_dssp EEEEECTTSCE--------------EEESSEEEESSCCGGGCEEEEEEEEETTE-EEEEEEEEEEECCC
T ss_pred EEEEEeCCCcc--------------ccCceEEEEecCCcCCCeEEEEEEEECCc-eEEEEEEEEEEecC
Confidence 99999954322 23456799999999999999999999887 44788888888765
No 47
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.92 E-value=8.7e-24 Score=150.92 Aligned_cols=182 Identities=15% Similarity=0.146 Sum_probs=112.0
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
.+|.|...+.. .+.+|+++.|.|.+... +..+.|+|++..+......
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~---------------------------~~~~~W~k~g~~~~~~~~~----- 50 (196)
T 2d3v_A 4 SKATLWAEPGS-VISRGNSVTIRCQGTLE---------------------------AQEYRLVKEGSPEPWDTQN----- 50 (196)
T ss_dssp CBCEEEEESCS-EEETTCCEEEEEECCTT---------------------------CCEEEEEETTCSSCSEEEC-----
T ss_pred CCCEEEeCCCC-cccCCCeEEEEEeCCCC---------------------------CcEEEEEECCCCCCccccc-----
Confidence 46788777764 78899999999998532 2269999987654221100
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC---cceeeEEEEEcC---CcccccccCCceeecCCCcEEEEE
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM---TKQMAFLEVVIP---PDISSEETSGDMMVPEGGSAKLVC 160 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l~v~~~---~~~~~~~~~~~~~~~~g~~~~l~C 160 (238)
.........|.|.+++.+|+|.|+|.+.+... .+..+.|.|... |.+.. .....+.+|+.+.|.|
T Consensus 51 ------~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~---~~~~~v~~G~~v~L~C 121 (196)
T 2d3v_A 51 ------PLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSA---LPSPVVTSGENVTLQC 121 (196)
T ss_dssp ------CCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEEEECSSCCCEEEC--------------CEEEE
T ss_pred ------ccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEEecCCCCCCeEEc---cCCccccCCCcEEEEE
Confidence 00112334899999999999999999976532 234566777752 33322 1224678899999999
Q ss_pred EEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC----CCccceEEEEE
Q psy7941 161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP----PTVSKRLMLHV 233 (238)
Q Consensus 161 ~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g----~~~~~~~~l~V 233 (238)
.+.+.| +.+.|++++.............. .......|.|.++..+|+|.|+|.|.|..+ ...+..+.|.|
T Consensus 122 ~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V 195 (196)
T 2d3v_A 122 GSRLRF-DRFILTEEGDHKLSWTLDSQLTP--SGQFQALFPVGPVTPSHRWMLRCYGSRRHILQVWSEPSDLLEIPV 195 (196)
T ss_dssp EESSCC-SEEEEEEC---CCEEEEECEECT--TSCEEEEEECCCCBTTBCEEEEEEEEETTEEEEECCCCCCEEECC
T ss_pred EcCCCC-CEEEEEccCCccccccccccccc--CCCceeEEEeeecCcccCeeEEEEEEccCCCCccCCCCccEEEEe
Confidence 999988 89999995433211110000000 001235799999999999999999999764 34466666654
No 48
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=99.92 E-value=2.6e-24 Score=169.80 Aligned_cols=180 Identities=24% Similarity=0.419 Sum_probs=133.6
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCcc
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNAR 89 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~ 89 (238)
.+...+....+.+|+++.|.|.+.. .|.+.+.|++++..+.. ...+
T Consensus 223 ~~~~~~~~~~~~~g~~~~l~C~~~~--------------------------~p~~~~~W~~~~~~~~~--------~~~~ 268 (403)
T 3laf_A 223 YFLQRPSNVIAIEGKDAVLECCVSG--------------------------YPPPSFTWLRGEEVIQL--------RSKK 268 (403)
T ss_dssp EEEECCCCEEEETTSCEEECCEEEE--------------------------ESCCEEEEEETTEECCC--------SSSS
T ss_pred eEecCCCceEecCCCcEEEEEEcCC--------------------------CCCCeEEEEECCeeccC--------CCce
Confidence 3455667788889999999999863 34567999997765422 1222
Q ss_pred EEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCC
Q psy7941 90 LSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP 168 (238)
Q Consensus 90 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~ 168 (238)
+..... .+|.|.+++.+|+|.|+|.+.+. +.....+.+.|..+|.+... +....+.+|+.+.|.|.+.|.|.|
T Consensus 269 ~~~~~~----~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~--~~~~~~~~g~~v~l~C~~~g~p~p 342 (403)
T 3laf_A 269 YSLLGG----SNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNH--PSNLYAYESMDIEFECAVSGKPVP 342 (403)
T ss_dssp EEEETT----TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEC--CCCEECCTTCCEEECCEEEEESCC
T ss_pred EEECCc----cEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEeec--CcceEEecCCeEEEEEEEeeccCC
Confidence 222221 18999999999999999999875 33455667888777766433 345678899999999999999999
Q ss_pred eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 169 KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 169 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
.+.|++ ++..+... .......++.|.|..+..+|.|.|+|.|.|..|.. +.++.|.|..||
T Consensus 343 ~v~W~~-~g~~~~~~------~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~P~ 403 (403)
T 3laf_A 343 TVNWMK-NGDVVIPS------DYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNA-QSSAQLIVPKPA 403 (403)
T ss_dssp EEEEEE-TTEECCCS------SSEEEETTTEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEECCCC-
T ss_pred EEEEEE-CCEECCCC------CcEEEecCccEEEeccccccCEEEEEEEEcCCceE-EEEEEEEEeCCC
Confidence 999999 55444221 22233445679999999999999999999999944 888899998876
No 49
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.92 E-value=7.8e-24 Score=156.55 Aligned_cols=187 Identities=17% Similarity=0.224 Sum_probs=121.6
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceee---eeeeee-----
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAV---LAIHEH----- 82 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~---~~~~~~----- 82 (238)
+..++..+.+.+|+++.|.|.+... ...|.+.+.|++++.... ......
T Consensus 5 v~~~~~~v~v~~G~~v~L~C~~~~~-----------------------~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~ 61 (250)
T 2fbo_J 5 VRTTHTEVEVHAGGTVELPCSYQLA-----------------------NDTQPPVISWLKGASPDRSTKVFKGNYNWQGE 61 (250)
T ss_dssp EECSCSEEEECTTSCEEECCEEEEC-----------------------SCCSCCEEEEEEEEETTEEEEEEEEEECCCBT
T ss_pred EEcCCCceEEecCCeEEEEEEeEcC-----------------------CCCCceEEEEEeCCCCCccEEEEeeccccccc
Confidence 4566778899999999999998641 123467899999764321 111000
Q ss_pred -------------EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc------ceeeEEEEEcCC--cccc
Q psy7941 83 -------------VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT------KQMAFLEVVIPP--DISS 141 (238)
Q Consensus 83 -------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~------~~~~~l~v~~~~--~~~~ 141 (238)
.....+|+.+.. .+..+|.|.+++.+|+|.|+|.+.+.... ...+.|.|..++ ....
T Consensus 62 ~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~ 139 (250)
T 2fbo_J 62 GLGFVESDSYKESFGDFLGRASVAN--LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVH 139 (250)
T ss_dssp TBCCCTTSEEEEECGGGTTTEECSC--TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCE
T ss_pred cccccccccccccCCCcCceEEecc--CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEE
Confidence 011233443322 23458999999999999999999875432 225567776542 2222
Q ss_pred cccCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecC------------------CCCCcceEEEeeceEEEE
Q psy7941 142 EETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN------------------PPSSQKVFSVESEVLSLT 203 (238)
Q Consensus 142 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~l~i~ 203 (238)
...+....+.+|+.+.|.|.+.+.|.|.+.|+++ +..+..... ..............|.|.
T Consensus 140 ~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 218 (250)
T 2fbo_J 140 VSTAEVVQVDEGNDITMTCPCTDCANANVTWYTG-PTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIR 218 (250)
T ss_dssp ECCCSEEECCTTCCEEECCCEESCTTCEEEEEEE-EECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEEC
T ss_pred EecCceEEecCCCcEEEEEEecCCCCCeeEEEeC-CCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEe
Confidence 2234456678899999999999999999999994 332211000 000111111233689999
Q ss_pred EeecCCCeEEEEEeeeCCCC
Q psy7941 204 KVTRSEMGAYQCIAANGVPP 223 (238)
Q Consensus 204 ~~~~~d~G~y~C~~~n~~g~ 223 (238)
++..+|+|.|+|.|.|..|.
T Consensus 219 ~v~~~D~G~Y~C~a~N~~g~ 238 (250)
T 2fbo_J 219 AAKITDAGRVWCELATGQGE 238 (250)
T ss_dssp SCCGGGCEEEEEEEESSSSG
T ss_pred cCCcccCEEEEEEecCCccc
Confidence 99999999999999997764
No 50
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.92 E-value=2.6e-23 Score=149.06 Aligned_cols=186 Identities=17% Similarity=0.261 Sum_probs=120.0
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccE
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARL 90 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 90 (238)
+..++..+.+.+|+++.|.|.+...... ....+.+.|+|.+..... ..+|+
T Consensus 5 v~~p~~~v~v~~G~~v~L~C~~~~~p~~---------------------~~~~~~v~W~k~~~~~~~--------~~~r~ 55 (202)
T 3bp6_B 5 VTAPKEVYTVDVGSSVSLECDFDRRECT---------------------ELEGIRASLQKVENDTSL--------QSERA 55 (202)
T ss_dssp EECSCSEEEEETTSCEEEEEEECTTC------------------------CTTEEEEEEECC--CCC--------BCSSC
T ss_pred EecCCcCEEEeCCCcEEEEEEecCCCCC---------------------CccceEEEEEcCCCcccc--------cCCce
Confidence 4556678899999999999999643210 011257999994433221 12333
Q ss_pred EEEEc--CCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccC
Q psy7941 91 SVTHN--DANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPT 167 (238)
Q Consensus 91 ~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~ 167 (238)
.+... ..+..+|.|.+++.+|+|.|+|.+.+... ....+.|.|..++..... ....+.+|+.+.|.|.+.|+|.
T Consensus 56 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~p~~---~~~~~~~g~~v~l~C~~~g~P~ 132 (202)
T 3bp6_B 56 TLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDT---RILEVPGTGEVQLTCQARGYPL 132 (202)
T ss_dssp EECGGGGGGTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCEEE---EEEECTTTCCEEEEEEEEEBSC
T ss_pred EEeeccccCCeeEEEECCCCHHHCcEEEEEEEeCCCcceEEEEEEecCCCCcccE---EEEecCCCCeEEEEEEccccCC
Confidence 33221 11445999999999999999999977543 344556777765432211 1124568999999999999999
Q ss_pred CeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEe
Q psy7941 168 PKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHC 235 (238)
Q Consensus 168 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~ 235 (238)
|.+.|+++++. ........... ....+.+..+..+|.|.|+|.|.|..|.. .+.+.|.|..
T Consensus 133 p~v~W~~~~~~-~~~~~~~~~~~-----~~~~~~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~l~v~~ 193 (202)
T 3bp6_B 133 AEVSWQNVSVP-ANTSHIRTPEG-----LYQVTSVLRLKPQPSRNFSCMFWNAHMKE-LTSAIIDPLS 193 (202)
T ss_dssp CEEEETTCCSC-CEEEEEECTTS-----CEEEEEEEEECCCTTCCEEEEEEETTTTE-EEEEEECC--
T ss_pred ceEEEEeCCCC-ccCceeeCCCC-----CEEEEEEEEEEcCCCCEEEEEEEcCCccc-ccEEEEEecC
Confidence 99999995443 22111000000 01245677888999999999999999944 7777776654
No 51
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=99.91 E-value=4.5e-23 Score=168.15 Aligned_cols=197 Identities=19% Similarity=0.256 Sum_probs=139.2
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCce-EEEEeCCcee--eeeeeee
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMK-VAWIKADTKA--VLAIHEH 82 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~W~~~~~~~--~~~~~~~ 82 (238)
..+|.|...+....+.+|+++.|.|.+.+ .|.+. +.|++++... .... ..
T Consensus 209 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~g--------------------------~p~p~~i~W~~~~~~~~~~~~~-~~ 261 (524)
T 2ec8_A 209 KAVPVVSVSKASYLLREGEEFTVTCTIKD--------------------------VSSSVYSTWKRENSQTKLQEKY-NS 261 (524)
T ss_dssp CSCCEEECSCSEEEEETTSCEEEEEEEEE--------------------------SSTTCEEEEEETTCSCCCCEEE-EE
T ss_pred CCCCcEEecCCcceEEcCCcEEEEEEEec--------------------------CCCcEEEEEEeCCCCCcccccc-cc
Confidence 36788888888889999999999999963 23444 9999987763 2111 11
Q ss_pred EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCccccccc-CCceeecCCCcEEEEE
Q psy7941 83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDISSEET-SGDMMVPEGGSAKLVC 160 (238)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~-~~~~~~~~g~~~~l~C 160 (238)
.+..+..... ..+|.|.+++.+|+|.|+|.+.+.. .....+.|.|..+|.+...+. .....+.+|+.+.|.|
T Consensus 262 ~~~~~~~~~~------~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C 335 (524)
T 2ec8_A 262 WHHGDFNYER------QATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIV 335 (524)
T ss_dssp EECSSSCEEE------EEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEE
T ss_pred ccccCCccce------EEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEE
Confidence 1111111211 2399999999999999999998753 334466788888777654332 2457789999999999
Q ss_pred EEccccCCe-EEEEeCCCeeeEeecCC--CCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 161 KAKGYPTPK-ITWRREDNKEIIVRSNP--PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 161 ~~~~~p~~~-~~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
.+.|.|.|. +.|+++ +..+...... .............|.|.++..+|.|.|+|.|.|..|. .+.++.|.|..+|
T Consensus 336 ~~~g~P~p~~v~W~k~-g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~~~P 413 (524)
T 2ec8_A 336 EYEAFPKPEHQQWIYM-NRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVN-AAIAFNVYVNTKP 413 (524)
T ss_dssp EEEEESCCCEEEEESS-SCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCE-EEEEEEEEECEEE
T ss_pred EEeecCCCcEEEEEEC-CeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCce-EEEEEEEEEecCC
Confidence 999999998 999995 4433221100 0000000112357999999999999999999999995 5888999998887
No 52
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.91 E-value=1.2e-23 Score=150.50 Aligned_cols=185 Identities=17% Similarity=0.168 Sum_probs=118.9
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
.+|.|...+. ..+.+|+++.|.|.+... | +.+.|+|++..+.....
T Consensus 4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~--------------------------~-~~~~W~k~g~~~~~~~~------ 49 (198)
T 1ugn_A 4 PKPTLWAEPG-SVITQGSPVTLRCQGGQE--------------------------T-QEYRLYREKKTAPWITR------ 49 (198)
T ss_dssp CCCEEEEESC-SEEETTCCEEEEEECCTT--------------------------C-CCEEEEESSSCCHHHHT------
T ss_pred CCCeEeccCC-CcccCCCcEEEEEEecCC--------------------------C-cEEEEEECCcccccccc------
Confidence 4677777666 488999999999998532 1 24999998765321000
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC----CcceeeEEEEEcCC-cccccccCCceeecCCCcEEEEEE
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP----MTKQMAFLEVVIPP-DISSEETSGDMMVPEGGSAKLVCK 161 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~----~~~~~~~l~v~~~~-~~~~~~~~~~~~~~~g~~~~l~C~ 161 (238)
... ......+|.|.+++.+|+|.|+|.+.+.. ..+..+.|.|...+ .+.... .....+.+|+.+.|.|.
T Consensus 50 ~~~-----~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~-~~~~~v~~G~~v~L~C~ 123 (198)
T 1ugn_A 50 IPQ-----ELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSA-QPSPVVNSGGNVTLQCD 123 (198)
T ss_dssp SCH-----HHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEEEEECSSCCCEEEE-ESCSEEETTCCEEEEEE
T ss_pred ccc-----cCCcccEEEECCCCHHHCeEEEEEEECCCCCcccCCccEEEEEcccccCCcccc-CCccccCCCCcEEEEEe
Confidence 000 00112289999999999999999997754 23455677777622 222211 12256789999999999
Q ss_pred EccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC----CccceEEEEEE
Q psy7941 162 AKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP----TVSKRLMLHVH 234 (238)
Q Consensus 162 ~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~----~~~~~~~l~V~ 234 (238)
+.+. .+.+.|++++. .+........ ..........|.|.++..+|.|.|+|.|.|..+. ..+..+.|.|.
T Consensus 124 ~~~~-~~~v~W~k~g~-~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~ 197 (198)
T 1ugn_A 124 SQVA-FDGFILCKEGE-DEHPQCLNSQ-PHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL 197 (198)
T ss_dssp CSSC-CSEEEEEEC-------CEEEC-------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred cCCC-CcEEEEEECCC-ccCCcccccc-ccCCCcceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence 9887 78999999543 3321100000 0000012357999999999999999999998753 33677887774
No 53
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=99.91 E-value=8e-23 Score=168.72 Aligned_cols=201 Identities=17% Similarity=0.229 Sum_probs=137.4
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceE----EEEe--CCc--eeeeee
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKV----AWIK--ADT--KAVLAI 79 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~W~~--~~~--~~~~~~ 79 (238)
+|.+...+..+.+.+|+++.|.|.+.. .|.+.+ .|++ ++. .+....
T Consensus 331 ~p~~~~~~~~~~~~~G~~v~l~C~~~~--------------------------~p~p~i~~w~~W~~~~~g~~~~l~~~~ 384 (585)
T 2ocw_A 331 ESTIPRSPTVVKGVAGSSVAVLCPYNR--------------------------KESKSIKYWCLWEGAQNGRCPLLVDSE 384 (585)
T ss_pred ccccccCCcceEEEeCCcEEEEEecCC--------------------------CCCccEEEEEEEEccCCCCCceeeeec
Confidence 567777788889999999999999853 334555 7999 665 333222
Q ss_pred eeeEeecCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEE
Q psy7941 80 HEHVITNNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKL 158 (238)
Q Consensus 80 ~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l 158 (238)
.........|+.+... ..+.++|.|.+++.+|+|.|+|.+...+.....+.|.|...+.... .+....+..|+.+.|
T Consensus 385 ~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~an~~g~~~~~~~l~V~~~~p~~~--~~~~~~v~~G~~v~L 462 (585)
T 2ocw_A 385 GWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLK--VPGNVTAVLGETLKV 462 (585)
T ss_pred ceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcccCCCccceeEEEEEecCccccc--cCCceeEecCCcEEE
Confidence 2222233456665532 3345579999999999999999993334445566777765433222 145567889999999
Q ss_pred EEEEc----cccCCeEEEEeCCCeeeEeecCCCCCc-ceEE---EeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEE
Q psy7941 159 VCKAK----GYPTPKITWRREDNKEIIVRSNPPSSQ-KVFS---VESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLM 230 (238)
Q Consensus 159 ~C~~~----~~p~~~~~W~~~~~~~~~~~~~~~~~~-~~~~---~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~ 230 (238)
.|.+. +.|.+.+.|++++. .+.......... .... .....|.|.++..+|+|.|+|.|.|..|...+..+.
T Consensus 463 ~C~~~~~~~~~p~~~v~W~k~g~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~ 541 (585)
T 2ocw_A 463 PCHFPCKFSSYEKYWCKWNNTGC-QALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVY 541 (585)
T ss_pred EEEecCCCCCCccEEEEEeecCc-eeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEE
Confidence 99986 67888999999544 332221111111 1111 112479999999999999999999999976566689
Q ss_pred EEEEeec
Q psy7941 231 LHVHCTY 237 (238)
Q Consensus 231 l~V~~~p 237 (238)
|.|..+|
T Consensus 542 l~V~~~p 548 (585)
T 2ocw_A 542 VAVEERK 548 (585)
T ss_pred EEEEeee
Confidence 9999887
No 54
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.91 E-value=7.1e-24 Score=153.34 Aligned_cols=185 Identities=19% Similarity=0.241 Sum_probs=116.6
Q ss_pred cCceeEEEec--CCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeC--CceeeeeeeeeEeecCcc
Q psy7941 14 PLENVTIAQG--RDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKA--DTKAVLAIHEHVITNNAR 89 (238)
Q Consensus 14 ~~~~~~v~~g--~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~--~~~~~~~~~~~~~~~~~~ 89 (238)
.+..+.+.+| +++.|.|.+.+ |.+.+.|++. ++.... ...+
T Consensus 13 ~p~~v~v~eG~~~~v~L~C~~~~---------------------------p~~~v~w~~~~~~g~~~~--------~~~~ 57 (213)
T 2x1w_L 13 QHGVVYITENKNKTVVIPCLGSI---------------------------SNLNVSLCARYPEKRFVP--------DGNR 57 (213)
T ss_dssp -CEEEEECCSTTCEEEECCCBSS---------------------------TTCCEEEEEETTTEEECC--------CSSS
T ss_pred CceEEEEecCCCccEEEeeccCC---------------------------CCcEEEEEhhcCCCcccc--------CCCc
Confidence 3578899999 99999999853 3456999985 343221 1122
Q ss_pred EEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCccee--eEEEEEcCCccc-ccccCCceeecCCCcEEEEEEEcccc
Q psy7941 90 LSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM--AFLEVVIPPDIS-SEETSGDMMVPEGGSAKLVCKAKGYP 166 (238)
Q Consensus 90 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~--~~l~v~~~~~~~-~~~~~~~~~~~~g~~~~l~C~~~~~p 166 (238)
+...... .|.|.+++.+|+|.|+|.+.+.+..... ..+.|.....+. .......+.+.+|+.+.|.|.+.|.|
T Consensus 58 ~~~~~~~----~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p 133 (213)
T 2x1w_L 58 ISWDSKK----GFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTEL 133 (213)
T ss_dssp CEEETTT----EEEEEGGGTTTCSEEEEEEC----CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECT
T ss_pred ccccCCc----cEEEccCChhcCceEEEEEEECCeeEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCC
Confidence 2222211 7999999999999999999764433222 445554322111 11223334788999999999999854
Q ss_pred --CCeEEEEeCCCeeeEe-e--cCCCCCcc-eEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeecC
Q psy7941 167 --TPKITWRREDNKEIIV-R--SNPPSSQK-VFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTYL 238 (238)
Q Consensus 167 --~~~~~W~~~~~~~~~~-~--~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p~ 238 (238)
.+.+.|++++...... . ........ ......+.|.|.++..+|+|.|+|.|.|..|.. ++++.|.|..+|+
T Consensus 134 ~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~-~~~~~l~V~~~p~ 210 (213)
T 2x1w_L 134 NVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK-KNSTFVRVHEDPI 210 (213)
T ss_dssp TBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEE-EEEEEEEEEC---
T ss_pred CCceEEEEEecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcE-EEEEEEEEecccc
Confidence 4589999955431110 0 00000000 001223479999999999999999999999954 8899999998874
No 55
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=99.91 E-value=2.5e-23 Score=157.21 Aligned_cols=188 Identities=18% Similarity=0.354 Sum_probs=133.6
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
.+|.|...+..+.+.+|+++.|.|.+.+. | +.+.|++.++.... .
T Consensus 3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~--------------------------p-~~v~W~~~~g~~~~--------~ 47 (291)
T 2wim_A 3 ALLQVTISLSKVELSVGESKFFTCTAIGE--------------------------P-ESIDWYNPQGEKII--------S 47 (291)
T ss_dssp CCCEEEESCSEEEEETTCCEEEEEEEESC--------------------------C-SEEECBCTTCCBCC--------C
T ss_pred CCceEEEeccceEecCCCcEEEEEEEeCC--------------------------C-CceEEECCCCcCcc--------C
Confidence 57899999999999999999999999642 2 26999995444322 2
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcc--eeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK--QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG 164 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~ 164 (238)
..++.+.... ...+|.|.+++.+|+|.|+|.+.+..... ....+.|..++.+.. .+....+.+|+.+.|.|.+.+
T Consensus 48 ~~~~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~--~~~~~~v~~G~~v~l~C~~~~ 124 (291)
T 2wim_A 48 TQRVVVQKEG-VRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFRE--VVSPQEFKQGEDAEVVCRVSS 124 (291)
T ss_dssp BTTEEEEEET-TEEEEEECSCCGGGCEEEEEEEECSSSCEEEEEEEEEEECCCBCCS--CCCSEEEETTSCEEECCCCBC
T ss_pred CCcEEEecCC-CEEEEEEccCCcccCEEEEEEEecccCceEEEEEEEEecCCcceEe--CCCChhhcCCCCEEEEEEEcc
Confidence 3344443322 34489999999999999999998754433 344566666665443 234567889999999999999
Q ss_pred ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC-CccceEEEEEEeec
Q psy7941 165 YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP-TVSKRLMLHVHCTY 237 (238)
Q Consensus 165 ~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~-~~~~~~~l~V~~~p 237 (238)
.|.+.+.|++++ ..+... .........++.|.|.++..+|.|.|+|.+.|..+. .....+.+.|..+|
T Consensus 125 ~p~~~v~W~~~~-~~~~~~----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p 193 (291)
T 2wim_A 125 SPAPAVSWLYHN-EEVTTI----SDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPP 193 (291)
T ss_dssp SSCCEEEEECC-----CBC----CCSSEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCC
T ss_pred CCCCEEEEEECC-cccccc----CCceEEEccCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCC
Confidence 999999999944 333211 112222334557999999999999999999998852 33466777777766
No 56
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=99.91 E-value=4.5e-23 Score=162.01 Aligned_cols=190 Identities=19% Similarity=0.380 Sum_probs=133.6
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeC--CceeeeeeeeeEee
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKA--DTKAVLAIHEHVIT 85 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~--~~~~~~~~~~~~~~ 85 (238)
+|.|.. +....+.+|+++.|.|.+. +.|.+.+.|+|+ +..+... ...
T Consensus 1 ~P~i~~-~~~~~~~~G~~v~l~C~~~--------------------------g~p~p~v~W~~~~~g~~~~~~----~~~ 49 (389)
T 2jll_A 1 QPHIIQ-LKNETTYENGQVTLVCDAE--------------------------GEPIPEITWKRAVDGFTFTEG----DKS 49 (389)
T ss_dssp CCEEEE-CCCEEEETTSEEEEEEEEE--------------------------CSSCCEEEEEETTTTEEECC------CC
T ss_pred CCeEEe-cCceEEeCCCeEEEEEEee--------------------------cccCCeEEEEeCCCCceeccC----cCC
Confidence 466665 5667788999999999996 345678999998 3332110 011
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG 164 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~ 164 (238)
.+.++.+... ....+|.|.+++.+|+|.|+|.+.|. +.....+.|.|..+|.+... .....+..|+.+.|.|.+.|
T Consensus 50 ~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~P~~~~~--~~~~~~~~g~~~~l~C~~~g 126 (389)
T 2jll_A 50 LDGRIEVKGQ-HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISN--QTIYYSWEGNPINISCDVKS 126 (389)
T ss_dssp SSSSEEEEEC-SSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEECCS--CCEEEECTTCCEEEEECEEE
T ss_pred CCCeEEEecc-CCcceEEEcccChhhCEEEEEEEEeCCCCcceEEEEEEEeCCEEecC--cceEEeccCCEEEEEEEEEe
Confidence 1345555432 34559999999999999999999875 33455677888877776532 33346788999999999999
Q ss_pred ccCCeEEEEeCCCeeeEeecCCCCCcceEE---EeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 165 YPTPKITWRREDNKEIIVRSNPPSSQKVFS---VESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 165 ~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
.|.+.+.|++ ++..+..... ..... .....|.|.++..+|.|.|+|.|.|..|.. ...+.+.|..+|
T Consensus 127 ~p~~~i~W~~-~g~~l~~~~~----~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~v~~~P 196 (389)
T 2jll_A 127 NPPASIHWRR-DKLVLPAKNT----TNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTR-FQEYILALADVP 196 (389)
T ss_dssp ESCCEEEEEE-TTEESSCTTC----TTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEE-EEEEEEEECCCC
T ss_pred cCCCeEEEEE-CCccCCcccC----ceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcE-EEEEEEEecCCC
Confidence 9999999999 5544432110 11111 123469999999999999999999999954 566666665443
No 57
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.91 E-value=1.3e-22 Score=143.95 Aligned_cols=177 Identities=16% Similarity=0.178 Sum_probs=120.5
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
.+|.|...+.. .+.+|++++|+|.+... .+.+.|+|++..+....
T Consensus 3 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~---------------------------~~~~~w~k~g~~~~~~~------- 47 (188)
T 1oll_A 3 PKPFIWAEPHF-MVPKEKQVTICCQGNYG---------------------------AVEYQLHFEGSLFAVDR------- 47 (188)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCTT---------------------------CCEEEEEETTEEEEEEC-------
T ss_pred CCCEEEeecCC-cCCCCCCEEEEEecCCC---------------------------CCEEEEEECCCcccccc-------
Confidence 46778777776 78999999999998521 34589999876543110
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC---CcceeeEEEEEc---CCcccccccCCceeecCCCcEEEEE
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP---MTKQMAFLEVVI---PPDISSEETSGDMMVPEGGSAKLVC 160 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~l~v~~---~~~~~~~~~~~~~~~~~g~~~~l~C 160 (238)
... .......+|.|.+++.+|+|.|+|.+.+.. ..+..+.|.|.. +|.+.. .+ ...+.+|+.+.|.|
T Consensus 48 ~~~----~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~--~p-~~~v~~G~~v~L~C 120 (188)
T 1oll_A 48 PKP----PERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSV--HP-GPEVISGEKVTFYC 120 (188)
T ss_dssp CSS----CTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEESCSCCCEEEE--ES-CSEEETTCEEEEEE
T ss_pred ccc----CCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEEecccCCCCeEEE--CC-CCccccCCEEEEEE
Confidence 000 011233489999999999999999997642 123455677764 333322 12 34578999999999
Q ss_pred EEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC--CCccceEEEEEE
Q psy7941 161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP--PTVSKRLMLHVH 234 (238)
Q Consensus 161 ~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g--~~~~~~~~l~V~ 234 (238)
.+.+ +.+.+.|++++. .+... .........|.|.++..+|+|.|+|.|.|... ...+..+.|.|.
T Consensus 121 ~~~~-~~~~~~w~k~g~-~~~~~-------~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~ 187 (188)
T 1oll_A 121 RLDT-ATSMFLLLKEGR-SSHVQ-------RGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT 187 (188)
T ss_dssp ECSS-SCSEEEEEEESS-SCEEE-------EEECSSEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred EcCC-CCCEEEEEECCc-ccccc-------ccCCCceeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence 9876 456999999543 33211 01122345799999999999999999998642 355778888775
No 58
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=99.91 E-value=3.4e-24 Score=155.82 Aligned_cols=197 Identities=19% Similarity=0.331 Sum_probs=122.6
Q ss_pred ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee--e--EeecCccEE
Q psy7941 16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE--H--VITNNARLS 91 (238)
Q Consensus 16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~--~--~~~~~~~~~ 91 (238)
+.+.+.+|+++.|.|.+...... ....+.+.|++++......... . .....+|+.
T Consensus 3 ~~v~~~~G~~v~L~C~~~~~~~~---------------------~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~ 61 (222)
T 4i0k_A 3 DPVVALVDTDATLRCSFSPEPGF---------------------SLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTA 61 (222)
T ss_dssp CCCCCCTTSCEEECCBCCCCTTC---------------------CTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEE
T ss_pred CCEEEECCCCeEEEEEecCCCCC---------------------CCCceEEEEEECCCccEEEEEcCCcccccceeCcEE
Confidence 45678899999999998643210 0123579999986543221110 0 011233444
Q ss_pred EEEc--CCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEE-ccccCC
Q psy7941 92 VTHN--DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKA-KGYPTP 168 (238)
Q Consensus 92 ~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~ 168 (238)
+... ..+..+|.|.+++.+|+|.|+|.+.+.......+.|.|..++............+..|+.+.|.|.+ .+.|.+
T Consensus 62 ~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P~~ 141 (222)
T 4i0k_A 62 LFPDLLVQGNASLRLQRVRVTDEGSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEA 141 (222)
T ss_dssp CCTTTGGGTBCCEEECSCCGGGCSCEEEEEEECCCCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEEEBSCC
T ss_pred EecccccCCeEEEEECCcccccCEEEEEEEEeCCCceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEecccccCCC
Confidence 3221 1125589999999999999999998765545555666665433221112223456789999999999 789999
Q ss_pred eEEEEeCCCeeeEeecCCCCCcceEEEee---ceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeecC
Q psy7941 169 KITWRREDNKEIIVRSNPPSSQKVFSVES---EVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTYL 238 (238)
Q Consensus 169 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p~ 238 (238)
.+.|+++++..+..... ........ ..|.+.++..+|.|.|+|.|.|..| ....++.|.|..+|+
T Consensus 142 ~v~W~~~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g-~~~~~~~l~V~~~p~ 209 (222)
T 4i0k_A 142 EVFWKDGQGVPLTGNVT----TSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVL-QQDAHGSVTITGQPL 209 (222)
T ss_dssp EEEEECTTSCBCCSEEE----EEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTT-TEEEEEEEECCC---
T ss_pred eEEEEcCCCccCCCCcc----eeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCC-CCceEEEEEEeCCcc
Confidence 99999855543321110 00000111 1378899999999999999999999 448888999988875
No 59
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=99.91 E-value=2.6e-23 Score=145.02 Aligned_cols=167 Identities=17% Similarity=0.228 Sum_probs=123.4
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
.+|.+...+..+.+.+|+++.|.|.+.... +.+.+.|++++..+..
T Consensus 3 p~p~i~~~p~~~~v~~G~~v~l~C~~~~~p-------------------------~~~~~~W~~~g~~~~~--------- 48 (170)
T 3ry4_A 3 PKAVLKLEPPWINVLQEDSVTLTCQGARSP-------------------------ESDSIQWFHNGNLIPT--------- 48 (170)
T ss_dssp CBCEEEEESCCSEEETTCEEEEEEESCCCS-------------------------SSSCEEEEETTEECTT---------
T ss_pred CCCEEEeCCCCeEEECCCcEEEEEEecCCC-------------------------CcceEEEEECCeEccc---------
Confidence 456777778888899999999999986421 1457999997665321
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEc-cc
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK-GY 165 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~ 165 (238)
.. ..+.+.+++.+|+|.|+|.+.+. .....+.+.|..++.... .....+.+|+.+.|.|.+. +.
T Consensus 49 ~~-----------~~~~~~~~~~~d~G~Y~C~~~~~-~~s~~~~l~v~~~~~~~~---~~~~~~~~g~~~~l~C~~~~~~ 113 (170)
T 3ry4_A 49 HT-----------QPSYRFKANNNDSGEYTCQTGQT-SLSDPVHLTVLFEWLVLQ---TPHLEFQEGETIMLRCHSWKDK 113 (170)
T ss_dssp CC-----------SSEEEEECCGGGCEEEEEEETTS-BCCCCEEEEEECCSEEEE---CSCSEECTTCCEEEEEEEGGGC
T ss_pred Cc-----------cceEEEecccccCeEEEEEEeCC-CceEeEEEEEECCceEec---CCCceeecCCeEEEEEECCCCC
Confidence 11 15667789999999999999753 334556777776554332 2235678899999999994 56
Q ss_pred cCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941 166 PTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 166 p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
|.+.+.|++ ++..+... .....|.|.++..+|.|.|+|.|.|..|...+..+.|.|+
T Consensus 114 p~~~~~W~~-~g~~~~~~-----------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~ 170 (170)
T 3ry4_A 114 PLVKVTFFQ-NGKSQKFS-----------HLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITVQ 170 (170)
T ss_dssp CEEEEEEEE-TTEEEEEE-----------SSCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred CCceEEEEE-CCeEcccc-----------CCCCeEEEEeccccCCEEEEEEEEeCcCccccccEEEEEC
Confidence 778999999 55544321 1245699999999999999999999998656788888774
No 60
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=99.91 E-value=2.3e-23 Score=157.47 Aligned_cols=199 Identities=17% Similarity=0.240 Sum_probs=127.7
Q ss_pred EEecCCEEEEeEEecCCCceeeeeeeee--------------eeecCCeEEeccC--CCC-ceEEEEeCCceeeeeeeee
Q psy7941 20 IAQGRDAIFTCVVNNLGGHRVSSSVTDT--------------HVNTGGSIVFPTD--SSA-MKVAWIKADTKAVLAIHEH 82 (238)
Q Consensus 20 v~~g~~~~l~C~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~--~~~-~~~~W~~~~~~~~~~~~~~ 82 (238)
+...|.+.|.|.+.+ +. +..+.+. .+..|+.+.+.|. .|. +.+.|++.++....
T Consensus 64 ~~~~d~G~Y~C~~~n--g~--~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~p~~~~v~W~~~~g~~l~----- 134 (290)
T 2o26_X 64 AEATRTGTYTCSNSN--GL--TSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLP----- 134 (290)
T ss_dssp CCGGGCEEEEEEESS--SC--EEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCBSCCSCEEEEEEETTSCCCC-----
T ss_pred cCHHhCeEEEEEeeC--Cc--cEEEEEEEeCCCcccccccceEEecCCeEEEeCcCCCCCCceEEEEeCCCcCCC-----
Confidence 456778888888877 32 2222222 1334666666654 466 88999654443221
Q ss_pred EeecCccEEEEEcCCCeEEEEEcccCcccCe-EEEEEEecCCCc--ceeeEEEEE----cCCcccccccCCceeecCCCc
Q psy7941 83 VITNNARLSVTHNDANTWTLNIRSVRREDRG-YYMCQVNTNPMT--KQMAFLEVV----IPPDISSEETSGDMMVPEGGS 155 (238)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~~~--~~~~~l~v~----~~~~~~~~~~~~~~~~~~g~~ 155 (238)
...++...... .|.|.+++.+|+| .|+|.+.+.... +..+.+.|. .+|.+... +....+.+|+.
T Consensus 135 ---~~~~~~~~~~~----~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~--~~~~~v~~G~~ 205 (290)
T 2o26_X 135 ---TDLTFVPNPKA----GITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVP--ETSHLLKKGDT 205 (290)
T ss_dssp ---TTCEEEEETTT----EEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECS--CSBCCCCTTCC
T ss_pred ---CCCceeeCCCC----CEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccC--CCcceEecCCc
Confidence 22333333222 8999999999999 999999886433 234667776 44544332 33347889999
Q ss_pred EEEEEEEccccCCe-EEEEeCCCee---eEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEE
Q psy7941 156 AKLVCKAKGYPTPK-ITWRREDNKE---IIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLML 231 (238)
Q Consensus 156 ~~l~C~~~~~p~~~-~~W~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l 231 (238)
+.|.|.+.|.|.|. +.|++++... +.................+.|.|.++..+|+|.|+|.|.|..|.. +.++.|
T Consensus 206 v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~-~~~~~l 284 (290)
T 2o26_X 206 FTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSA-NVTTTL 284 (290)
T ss_dssp EEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEE-EEEEEE
T ss_pred EEEEEEEecCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcE-EEEEEE
Confidence 99999999999996 9999955442 111110000000012334589999999999999999999999955 889999
Q ss_pred EEEeec
Q psy7941 232 HVHCTY 237 (238)
Q Consensus 232 ~V~~~p 237 (238)
.|..+|
T Consensus 285 ~V~~~P 290 (290)
T 2o26_X 285 KVVEKG 290 (290)
T ss_dssp CC----
T ss_pred EEEeCC
Confidence 998876
No 61
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.91 E-value=1.1e-23 Score=150.59 Aligned_cols=180 Identities=23% Similarity=0.381 Sum_probs=122.5
Q ss_pred cccee-ccCceeEEEecCCEEEEeE-EecCCCceeeeeeeeeeeecCCeEEeccCCCC-ceEEEEeCCceeeeeeeeeEe
Q psy7941 8 EPDFL-YPLENVTIAQGRDAIFTCV-VNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA-MKVAWIKADTKAVLAIHEHVI 84 (238)
Q Consensus 8 ~p~~~-~~~~~~~v~~g~~~~l~C~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~~~~~~~~~ 84 (238)
.|.|. ..+..+.+.+|+++.|.|. +.. .|. +.+.|++++..+....
T Consensus 7 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~--------------------------~p~~~~v~W~~~~~~~~~~~----- 55 (201)
T 3s97_C 7 LDPFPPEERPEVRVKEGKGMVLLCDPPYH--------------------------FPDDLSYRWLLNEFPVFITM----- 55 (201)
T ss_dssp ECCCCSSCCCCEEEETTCCEEECCCCCSE--------------------------ESSCCEEEEEESSTTCBCCC-----
T ss_pred CCccCcCCCceEEEECCCCEEEecccccc--------------------------CCCceEEEEEECCceeeeee-----
Confidence 34444 5568899999999999999 532 235 6799999876643211
Q ss_pred ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcce----eeEEEEEc-------CCcccccccCCceeecCC
Q psy7941 85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ----MAFLEVVI-------PPDISSEETSGDMMVPEG 153 (238)
Q Consensus 85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~----~~~l~v~~-------~~~~~~~~~~~~~~~~~g 153 (238)
+.+.... ....+|.|.+++.+|+|.|+|.+.+...... ...+.+.. +|.+... .....+..|
T Consensus 56 --~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~g 128 (201)
T 3s97_C 56 --DKRRFVS---QTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQ--FKDVYALMG 128 (201)
T ss_dssp --SSSEEEC---TTTCCEEESSCCGGGCEEEEEEEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEE--CCCEEEETT
T ss_pred --CCCeEEE---cCCCeEEECcCCcccCeEEEEEEEecCCCcchhhcccceeeccccccCCCCCceEec--CCceEEecC
Confidence 1111111 1122799999999999999999976432111 12233321 1222221 235678899
Q ss_pred CcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941 154 GSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233 (238)
Q Consensus 154 ~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V 233 (238)
+.+.|.|.+.+.|.|.+.|+++ +..+.. .......+..|.|.++..+|.|.|+|.|.|..|.. +.++.|.|
T Consensus 129 ~~~~l~C~~~g~p~p~v~W~~~-~~~~~~-------~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V 199 (201)
T 3s97_C 129 QNVTLECFALGNPVPDIRWRKV-LEPMPS-------TAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKD-KHQARIYV 199 (201)
T ss_dssp CCEEEEEEEEEESCCEEEEEET-TBCCCT-------TCEEETTTTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred CcEEEEEEccCCCCCceEEEeC-CCcCCC-------ceeecCCCCEEEEccCChhhCEEEEEEEEecCCce-eeeEEEEE
Confidence 9999999999999999999994 433321 11222345689999999999999999999999944 77888877
Q ss_pred E
Q psy7941 234 H 234 (238)
Q Consensus 234 ~ 234 (238)
+
T Consensus 200 ~ 200 (201)
T 3s97_C 200 Q 200 (201)
T ss_dssp E
T ss_pred e
Confidence 5
No 62
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=99.91 E-value=4.4e-23 Score=162.73 Aligned_cols=180 Identities=20% Similarity=0.411 Sum_probs=129.5
Q ss_pred ccceeccC---ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe
Q psy7941 8 EPDFLYPL---ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI 84 (238)
Q Consensus 8 ~p~~~~~~---~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~ 84 (238)
+|.+..+. ....+.+|+++.|.|.+. +.|.+.+.|++++..+...
T Consensus 219 ~p~~~~~~~~~~~~~~~~G~~v~l~C~~~--------------------------g~p~~~v~W~~~~~~~~~~------ 266 (404)
T 3p3y_A 219 TPSFMYPQGTASSQMVLRGMDLLLECIAS--------------------------GVPTPDIAWYKKGGDLPSD------ 266 (404)
T ss_dssp CCCBSSSCSSEEEEEEETTSCEEEECCBC--------------------------CSSCCEEEEEETTBCCCTT------
T ss_pred CCccccccCCCCCceEecCCCEEEEEEEC--------------------------CCCCCcEEEEECCEECCCC------
Confidence 45554432 456788999999999874 3456789999987654211
Q ss_pred ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEc
Q psy7941 85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK 163 (238)
Q Consensus 85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~ 163 (238)
...... ...+|.|.+++.+|+|.|+|.+.+.. .....+.|.|..+|.+.. .+....+.+|+.+.|.|.+.
T Consensus 267 ----~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~--~~~~~~v~~g~~~~l~C~~~ 337 (404)
T 3p3y_A 267 ----KAKFEN---FNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLD--EPKNLILAPGEDGRLVCRAN 337 (404)
T ss_dssp ----TEEEEG---GGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEE--CCCCEEECTTCCEEEECEEE
T ss_pred ----cccccc---cCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeeec--cCCcceeecCCcEEEEEEcc
Confidence 111111 11289999999999999999998753 344556677777766543 24456788999999999999
Q ss_pred cccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941 164 GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 164 ~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
|.|.|.+.|++ ++..+.... ........++.|.|.++..+|.|.|+|.|.|..|.. ..++.|.|.
T Consensus 338 g~p~p~v~W~~-~g~~~~~~~----~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~ 402 (404)
T 3p3y_A 338 GNPKPTVQWMV-NGEPLQSAP----PNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYL-LANAFVSVL 402 (404)
T ss_dssp EESCCEEEEEE-TTEEGGGSC----CCTTEEEETTEEEESSCCSSCCCEEEEEEEETTEEE-EEEEEEEEC
T ss_pred ccCCCceEEEE-CCEecCCCC----CCceEEecCCEEEEeecCHHHCEEEEEEEEeCCCcE-EEEEEEEEE
Confidence 99999999999 555443211 111223345689999999999999999999999944 777777775
No 63
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=99.91 E-value=1.1e-22 Score=143.72 Aligned_cols=167 Identities=17% Similarity=0.220 Sum_probs=115.7
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
.+|.|...+.. .+.+|+++.|.|.+.. +.+.+.|+|++... ..
T Consensus 7 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~---------------------------~~~~~~W~k~g~~~--------~~- 49 (184)
T 2gi7_A 7 PKPSLQALPSS-LVPLEKPVTLRCQGPP---------------------------GVDLYRLEKLSSSR--------YQ- 49 (184)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECST---------------------------TCSEEEEEETTTCC--------EE-
T ss_pred CCCeEEeCCCc-cccCCCcEEEEEeCCC---------------------------CCCEEEEEECCccc--------cC-
Confidence 46677766664 7899999999999752 24579999986540 00
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC---cceeeEEEEEc---CCcccccccCCceeecCCCcEEEEE
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM---TKQMAFLEVVI---PPDISSEETSGDMMVPEGGSAKLVC 160 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l~v~~---~~~~~~~~~~~~~~~~~g~~~~l~C 160 (238)
....|.|.+++.+|+|.|+|.+.+... .+..+.|.|.. +|.+... + ...+.+|+.+.|.|
T Consensus 50 -----------~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~--p-~~~v~~G~~v~l~C 115 (184)
T 2gi7_A 50 -----------DQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQ--P-GPAVSSGGDVTLQC 115 (184)
T ss_dssp -----------SSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEESSSCCCEEEEE--C-CCSSCCTTCEEEEE
T ss_pred -----------cccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEecCcCCCCEEEeC--C-CceecCCCcEEEEE
Confidence 112899999999999999999987532 23445666653 2223221 2 34567899999999
Q ss_pred EEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC----CccceEEEEE
Q psy7941 161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP----TVSKRLMLHV 233 (238)
Q Consensus 161 ~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~----~~~~~~~l~V 233 (238)
.+.+.| +.+.|++++ ..+... .........|.|.++..+|.|.|+|.|.|..+. ..+..+.|.|
T Consensus 116 ~~~~~~-~~~~w~k~g-~~~~~~-------~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V 183 (184)
T 2gi7_A 116 QTRYGF-DQFALYKEG-DPAPYK-------NPERWYRASFPIITVTAAHSGTYRCYSFSSRDPYLWSAPSDPLELVV 183 (184)
T ss_dssp ECSSCC-CEEEEEECC-CCTTSC-------CCCEEEEESSSEEEETTCCSEEEEEEEECTTSTTBCCCCCCCEEEEC
T ss_pred EcCCCC-cEEEEEECC-CcCcce-------ecCCCceEEEEEccCCccCCeEEEEEEEeCCCCcccCCCCCcEEEEe
Confidence 987654 699999954 332210 011234557999999999999999999997642 3466666655
No 64
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.90 E-value=3.4e-22 Score=144.15 Aligned_cols=156 Identities=15% Similarity=0.317 Sum_probs=108.1
Q ss_pred CCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEc------
Q psy7941 62 SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVI------ 135 (238)
Q Consensus 62 ~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~------ 135 (238)
|.+.+.|++++..+. ...++.+... ....+|.|.+++.+|+|.|+|.+.+... .....+.+.+
T Consensus 31 p~~~i~W~~~g~~i~---------~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~~~n~~~-~~~~~~~l~v~~~~~~ 99 (212)
T 2r15_A 31 EDLKVNWSHNGSAIR---------YSDRVKTGVT-GEQIWLQINEPTPNDKGKYVMELFDGKT-GHQKTVDLSGQAYDEA 99 (212)
T ss_dssp SSCEEEEEETTEECC---------CCSSEEEEEE-TTEEEEEEESCCGGGCEEEEEEEECSSC-EEEEEEEECHHHHHHH
T ss_pred CCceEEEEECCEEcc---------CCCeEEEEEe-CCEEEEEECCCCcccCEEEEEEEecCCc-ceEEEEEEEEeeccch
Confidence 477899999876543 2344444332 2344799999999999999999987433 2333344432
Q ss_pred ----------------CCcccccccCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe---
Q psy7941 136 ----------------PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--- 196 (238)
Q Consensus 136 ----------------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--- 196 (238)
.|.+.. ..+....+..|+.+.|.|.+.|.|.|.+.|++ ++..+.... .......
T Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~-~~~~~~~~~-----~~~~~~~~~~ 172 (212)
T 2r15_A 100 YAEFQRLKQAAIAEKNRARVLG-GLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK-NEKALAQTD-----HCNLKFEAGR 172 (212)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEE-BCCSEEEEETTCCEEEEEEEECSSCCEEEEEE-TTEEECCCS-----SEEEEEETTT
T ss_pred hhhccccCcccccccCCCcccc-cCCCcEEEccCCeEEEEEEEcCCCCceEEEEE-CCeECccCC-----CEEEEEcCCC
Confidence 122211 12344678899999999999999999999999 555443211 1111111
Q ss_pred eceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEee
Q psy7941 197 SEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCT 236 (238)
Q Consensus 197 ~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~ 236 (238)
...|.|.++..+|.|.|+|.|.|..|. .+.++.|.|..|
T Consensus 173 ~~~L~i~~~~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~~P 211 (212)
T 2r15_A 173 TAYFTINGVSTADSGKYGLVVKNKYGS-ETSDFTVSVFIP 211 (212)
T ss_dssp EEEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECC
T ss_pred EEEEEEcCcchHHCeEEEEEEEcCCCc-EEEEEEEEEEcc
Confidence 237999999999999999999999994 488888888754
No 65
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.90 E-value=9.5e-23 Score=147.28 Aligned_cols=182 Identities=22% Similarity=0.330 Sum_probs=119.5
Q ss_pred cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--ceeeeee---eeeE
Q psy7941 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKAVLAI---HEHV 83 (238)
Q Consensus 9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~~~~~---~~~~ 83 (238)
|.+..++ .+.+.+|+++.|.|.+.+ .+.+.+.|+|.. ....... ....
T Consensus 2 ~~v~~~~-~~~v~~G~~v~L~C~~~~--------------------------~~~~~v~W~k~~~~~~~~~~~~~~~~~~ 54 (213)
T 3mj8_L 2 YTLTQPP-LVSVALGQKATITCSGDK--------------------------LSDVYVHWYQQKAGQAPVLVIYEDNRRP 54 (213)
T ss_dssp CCBBCCS-EEEEETTSCEEEEEECSS--------------------------TTTSCEEEEEECTTSCCEEEEBTTTBCC
T ss_pred eeEEeCC-cEEEeCCCCEEEEEEcCC--------------------------CCCceEEEEEECCCCCcEEEEEECCccC
Confidence 4566777 889999999999999852 345679999942 2111100 0011
Q ss_pred eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC----cceeeEEEEE----cCCcccccccCCceeecCCCc
Q psy7941 84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM----TKQMAFLEVV----IPPDISSEETSGDMMVPEGGS 155 (238)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~l~v~----~~~~~~~~~~~~~~~~~~g~~ 155 (238)
.....|+.+.. ....++|.|.+++.+|+|.|+|.+.+... ....+.|.|. .+|.+... +....+..|+.
T Consensus 55 ~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~--~~~~~~~~g~~ 131 (213)
T 3mj8_L 55 SGIPDHFSGSN-SGNMATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLF--PPSSEELKTNQ 131 (213)
T ss_dssp TTSCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEE--CCCHHHHTTTE
T ss_pred CCccCcEEEEe-cCCEEEEEECCCChhhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEcc--CCCcccccCCc
Confidence 11245676655 45567999999999999999999977543 2445677887 44444332 12223447999
Q ss_pred EEEEEEEccc-cC-CeEEEEeCCCeeeEeecC---CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 156 AKLVCKAKGY-PT-PKITWRREDNKEIIVRSN---PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 156 ~~l~C~~~~~-p~-~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
+.|.|.+.|. |+ +.+.|++ ++..+..... ....... ....+.|.|..+..+|.|.|+|.|.|..+
T Consensus 132 v~l~C~~~g~~p~~~~v~W~k-~g~~l~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~ 201 (213)
T 3mj8_L 132 ATLVCMINGFYPADVAVTWEA-DGTPITQGVKTTQPSKSDSK-YMATSYLTMTADAWKSRNTFICKVTHGGN 201 (213)
T ss_dssp EEEEEEEEEEBSSCCEEEEEE-TTEEECTTEEECCCEEETTE-EEEEEEEEEESHHHHSCSCEEEEEEETTE
T ss_pred EEEEEEeeceeCCCeEEEEEc-CCcccCCCcccCCcCccCCc-EEEEEEEEEeHHHcCCCCEEEEEEEECCc
Confidence 9999999885 44 3999999 5554432100 0000111 12234688999999999999999999886
No 66
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.90 E-value=1.5e-24 Score=168.14 Aligned_cols=184 Identities=16% Similarity=0.221 Sum_probs=131.7
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
+.+|.|...+..+.+.+|+++.|.|.+.+ .|.+.+.|++++..........
T Consensus 156 c~~P~i~~~~~~~~v~~G~~v~L~C~~~g--------------------------~p~p~i~W~~~~~~~~~~~~~~--- 206 (347)
T 2ifg_A 156 CGVPTLKVQVPNASVDVGDDVLLRCQVEG--------------------------RGLEQAGWILTELEQSATVMKS--- 206 (347)
T ss_dssp CCCCEEEEECCSSCCBTTCCEEEEEEEEC--------------------------SSCCCCCEEESCCCSSEEECCC---
T ss_pred CCCCceeccCCceEEeCCCcEEEEEEEec--------------------------CCCCEEEEEcCCceeecccccc---
Confidence 45788888888999999999999999853 3466799999876543221100
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCe-EEEEEEecCC-CcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEc
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRG-YYMCQVNTNP-MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK 163 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~ 163 (238)
......+|.|.+++.+|+| .|+|.+.+.. .....+.+.|..+|.+ . .....+|+.+.|.|.+.
T Consensus 207 ---------~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~P~i-~-----~~~~~~g~~v~l~C~~~ 271 (347)
T 2ifg_A 207 ---------GGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASV-Q-----LHTAVEMHHWCIPFSVD 271 (347)
T ss_dssp ---------CCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBEEEEE-E-----ECCCEESSSEEEEEEEE
T ss_pred ---------eecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcCCCee-e-----eccCccCceEEEEEEee
Confidence 1223448999999999999 9999997753 3344445556555554 1 11245689999999999
Q ss_pred cccCCeEEEEeCCCeeeEeecCCCCCcc------eEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 164 GYPTPKITWRREDNKEIIVRSNPPSSQK------VFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 164 ~~p~~~~~W~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
|.|.|.+.|++ ++..+..... .... ......+.|.|.++..+|+|.|+|.|.|..|. .++++.|.|..+|
T Consensus 272 g~P~p~i~W~~-~g~~l~~~~~--~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~-~~~~~~l~V~~~P 347 (347)
T 2ifg_A 272 GQPAPSLRWLF-NGSVLNETSF--IFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ-ASASIMAAFMDNP 347 (347)
T ss_dssp EESCCEEEEEE-TTEECCCCSS--EEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEECSCCCC
T ss_pred ecCCCcEEEEe-CCEECCCCcc--eeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCc-eeeEEEEEecCCC
Confidence 99999999999 5554432110 0000 00122457999999999999999999999994 4888999988877
No 67
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=99.90 E-value=3.2e-22 Score=144.48 Aligned_cols=180 Identities=18% Similarity=0.267 Sum_probs=117.8
Q ss_pred cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee-eeeee--eeE
Q psy7941 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA-VLAIH--EHV 83 (238)
Q Consensus 9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~-~~~~~--~~~ 83 (238)
|.+..++..+.+.+|+++.|.|.+.. .|.+.+.|+|+.. .. ..... ...
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~--------------------------~~~~~v~W~k~~~~~~~~~~~~~~~~~~ 55 (213)
T 3nl4_L 2 VVMTQTPASVSEPVGGTVTIKCQASQ--------------------------SISSYLAWYQQKPGQRPRLLIYETSTLA 55 (213)
T ss_dssp CCEEEECSEEEEETTCCEEEEEEESS--------------------------CCTTCEEEEEECTTSCCEEEEETTTEEC
T ss_pred ccEEeCCCeEEEcCCCCEEEEEEecC--------------------------CCCceEEEEEECCCCCcEEEEEeCCccC
Confidence 56777888999999999999999863 2456799999531 11 11000 001
Q ss_pred eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC----cceeeEEEEEc---CCcccccccCCceeecCCCcE
Q psy7941 84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM----TKQMAFLEVVI---PPDISSEETSGDMMVPEGGSA 156 (238)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~l~v~~---~~~~~~~~~~~~~~~~~g~~~ 156 (238)
.....|+.... ....++|.|.+++.+|+|.|+|.+.+... ....+.+.|.. +|.+... .....+..|+.+
T Consensus 56 ~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~--~~~~~~~~g~~v 132 (213)
T 3nl4_L 56 SGVPSRFKGSG-SGTDFTLTISDLECADAATYYCQSTYENPTYVSFGGGTEVGVKGDPVAPTVLIF--PPSADLVATGTV 132 (213)
T ss_dssp TTCCTTEEEEE-ETTEEEEEECSCCGGGCEEEEEEECCSSTTTCEECCCEEEEEECCCBCCEEEEE--CCCHHHHTTSEE
T ss_pred CCCCccEEEec-CCCEEEEEECCCChHHCEEEEEecCCCCceeEEeCCCeEEEEeCCCcCCeEEEe--CCchhhccCCcE
Confidence 11245776663 44667999999999999999999976533 23344566654 2222221 222235568999
Q ss_pred EEEEEEcc-ccCCeEEEEeCCCeeeEee----cCCCCCcceEEEeeceEEEEEeecCCCeEEEEEee
Q psy7941 157 KLVCKAKG-YPTPKITWRREDNKEIIVR----SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAA 218 (238)
Q Consensus 157 ~l~C~~~~-~p~~~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 218 (238)
.|.|.+.+ +|.+.+.|++ ++..+... ..............+.|.|..+..+|.|.|+|.|.
T Consensus 133 ~l~C~~~g~~P~~~v~W~k-~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~ 198 (213)
T 3nl4_L 133 TIVCVANKYFPDVTVTWEV-DGTTQTTGIENSKTPQNSADCTYNLSSTLTLTSTEYNSHKEYTCKVT 198 (213)
T ss_dssp EEEEEEEEEBSCCEEEEEE-TTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEE
T ss_pred eEEEEEecccCCcEEEEEe-CCccCCCCeecccCcccCCCCeEEEEEEEEecHHHcCCCCeEEEEEE
Confidence 99999988 8989999999 55444211 00001111112223579999999999999999998
No 68
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=99.90 E-value=8.6e-23 Score=152.57 Aligned_cols=199 Identities=19% Similarity=0.300 Sum_probs=122.7
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe---
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI--- 84 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~--- 84 (238)
.+.+..++..+.+.+|+++.|.|.+....+ .+.+.+.|++.+............
T Consensus 5 ~~~v~~~~~~~~v~~G~~v~L~C~~~~~~~-----------------------~~~~~v~W~k~~~~~~~~~~~~~~~~~ 61 (268)
T 3mj6_A 5 LPGLTVSSPQLRVHVGESVLMGCVVQRTEE-----------------------KHVDRVDWLFSKDKDDASEYVLFYYSN 61 (268)
T ss_dssp -------CCEEEEETTCCEEECCBCCCSSC-----------------------CCEEEEEEEEESSSTTCCEEEEEEETT
T ss_pred ccccccCCCceEEecCCcEEEEEEeecCCC-----------------------CceEEEEEEEeCCCCCceEEEEEEcCC
Confidence 456677888899999999999999863222 335679999965432111000000
Q ss_pred ------ecCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCCcE
Q psy7941 85 ------TNNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSA 156 (238)
Q Consensus 85 ------~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~ 156 (238)
....|+.+.. ......+|.|.+++.+|+|.|+|.+.+... ......+.+.+.+. .+....+..|+.+
T Consensus 62 ~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~-----~p~~~~v~~G~~v 136 (268)
T 3mj6_A 62 LSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPE-----EPRDLRVRVGDTT 136 (268)
T ss_dssp EEEECGGGTTTEEECSCTTTTBCCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECC-----CCSEEEEETTCCE
T ss_pred CcccCccccCceEEeecCCCCEEEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEecc-----CCCccccccCCcE
Confidence 0124444432 122445899999999999999999976532 22333344433222 2335678899999
Q ss_pred EEEEEE---ccccCCeEEEEeCCCeee-----E----------eecCCCCCcceEE-----EeeceEEEEEeecCCCeEE
Q psy7941 157 KLVCKA---KGYPTPKITWRREDNKEI-----I----------VRSNPPSSQKVFS-----VESEVLSLTKVTRSEMGAY 213 (238)
Q Consensus 157 ~l~C~~---~~~p~~~~~W~~~~~~~~-----~----------~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y 213 (238)
.|.|.+ .+.|.+.+.|+++++... . ............. .....|.|.++..+|.|.|
T Consensus 137 ~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y 216 (268)
T 3mj6_A 137 QMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIY 216 (268)
T ss_dssp EECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEE
T ss_pred EEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEE
Confidence 999999 567899999998443211 0 0000000011111 2345899999999999999
Q ss_pred EEEeeeCCCCCccceEEEEEEe
Q psy7941 214 QCIAANGVPPTVSKRLMLHVHC 235 (238)
Q Consensus 214 ~C~~~n~~g~~~~~~~~l~V~~ 235 (238)
+|.|.|..| ..+.++.|.|..
T Consensus 217 ~C~a~n~~g-~~~~~~~l~V~~ 237 (268)
T 3mj6_A 217 TCSIYVGKL-ESRKTIVLHVVQ 237 (268)
T ss_dssp EEEEEETTE-EEEEEEEEEEEC
T ss_pred EEEEEcCCc-eEEEEEEEEEEc
Confidence 999999888 447888888843
No 69
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=99.90 E-value=1.4e-23 Score=159.95 Aligned_cols=198 Identities=15% Similarity=0.202 Sum_probs=131.3
Q ss_pred EEecCCEEEEeEEecCCCceeeeeeeeee----------------eecCCeEEec----cCCCCceEEEEeCCceeeeee
Q psy7941 20 IAQGRDAIFTCVVNNLGGHRVSSSVTDTH----------------VNTGGSIVFP----TDSSAMKVAWIKADTKAVLAI 79 (238)
Q Consensus 20 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~----~~~~~~~~~W~~~~~~~~~~~ 79 (238)
+...|.+.|.|.+.+.........+...+ ...++.+.+. .+.|.+.++|++++..+....
T Consensus 81 v~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~ 160 (308)
T 4fom_A 81 IGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTT 160 (308)
T ss_dssp CCGGGCEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEE
T ss_pred CCHHHCEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCccccccc
Confidence 56789999999998764433333222221 1234555544 357899999999877653221
Q ss_pred eeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cc--eeeEEEEEcCCcccccccCCceeecCCCcE
Q psy7941 80 HEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TK--QMAFLEVVIPPDISSEETSGDMMVPEGGSA 156 (238)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~--~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~ 156 (238)
. ........... .|.|.++..+|.|.|+|.+.+... .. ..+.|.|..+|.+.... .....+..|+.+
T Consensus 161 ~---~~~~~~~~~~s------~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~-~~~~~~~~g~~v 230 (308)
T 4fom_A 161 T---SFPNETATIIS------QYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTG-YDGNWFVGRKGV 230 (308)
T ss_dssp E---ECTTSCEEEEE------EEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBC-CCSCEETTCCSC
T ss_pred c---eeeeecccccc------cceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcc-cceeeeeccccE
Confidence 1 11122222222 799999999999999999987532 22 23345555556544322 233456778999
Q ss_pred EEEEEEccccCC-eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEe
Q psy7941 157 KLVCKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHC 235 (238)
Q Consensus 157 ~l~C~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~ 235 (238)
.|.|.+.|.|.| .+.|+++++. +... .....+..|.|..+..+|+|.|+|.|.|..|.. +.++.|.|..
T Consensus 231 ~l~C~~~g~P~p~~v~W~k~~~~-~~~~--------~~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~-~~~~~l~V~~ 300 (308)
T 4fom_A 231 NLKCNADANPPPFKSVWSRLDGQ-WPDG--------LLASDNTLHFVHPLTFNYSGVYICKVTNSLGQR-SDQKVIYISD 300 (308)
T ss_dssp EEECCEEEESCEEEEECCBSSSC-CCSS--------CBCSTTEEECCSCCCSCCCSEEEEEEEETTEEE-EEEEECCEEC
T ss_pred EEEEEEecCCCCcEEEEEECCeE-CCCc--------EEEcCCeEEEECCCChhhCEEEEEEEEeCCCcE-EEEEEEEEEc
Confidence 999999999988 7999995433 2211 111123345678899999999999999999954 8889999999
Q ss_pred ec
Q psy7941 236 TY 237 (238)
Q Consensus 236 ~p 237 (238)
+|
T Consensus 301 ~P 302 (308)
T 4fom_A 301 PP 302 (308)
T ss_dssp CC
T ss_pred CC
Confidence 88
No 70
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.90 E-value=6.9e-22 Score=139.51 Aligned_cols=168 Identities=18% Similarity=0.387 Sum_probs=116.5
Q ss_pred eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCC
Q psy7941 18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDA 97 (238)
Q Consensus 18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (238)
..+.+|+++.|.|.+.... .|...+.|++++..+.. .... .
T Consensus 8 ~~v~~G~~v~l~C~~~~~~------------------------~p~~~~~W~k~~~~l~~---------~~~~------~ 48 (184)
T 3b5h_A 8 TVEDLGSKILLTCSLNDSA------------------------TEVTGHRWLKGGVVLKE---------DALP------G 48 (184)
T ss_dssp EEEEETTEEEEEEEEESCS------------------------SCCCEEEEESSSEEEEC---------TTCC------C
T ss_pred EEEecCCCEEEEEECCCCC------------------------CCceEEEEEeCCEEeec---------cccc------C
Confidence 4678999999999986421 12337999997754321 1111 1
Q ss_pred CeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcccc-CCeEEEEe--
Q psy7941 98 NTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYP-TPKITWRR-- 174 (238)
Q Consensus 98 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~-- 174 (238)
....|.|. +.+|+|.|+|.+.+. ....+.|.|..+|.+.... ....+.+|+.+.|.|.+.|.| .+.+.|++
T Consensus 49 ~~~~l~i~--~~~d~G~Y~C~~~n~--~~~~~~l~V~~~P~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~ 122 (184)
T 3b5h_A 49 QKTEFKVD--SDDQWGEYSCVFLPE--PMGTANIQLHGPPRVKAVK--SSEHINEGETAMLVCKSESVPPVTDWAWYKIT 122 (184)
T ss_dssp SEEEEEEC--GGGCCEEEEEEEEST--TSCEEEEEECCSCCCEESC--SEEEECTTSCEEEEEECCCSSCCCEEEEEECC
T ss_pred CcEEEEEe--chhhCeEEEEEEECC--cCcEEEEEEecCCceeecC--CCcEEcCCCcEEEEEEECCCCCCCeEEEEEcC
Confidence 12256665 689999999999873 3466778888888776432 445688999999999999999 78999999
Q ss_pred -CCCeeeEeecCCCCCcceEEEe---eceEEEEEee-cCCCeEEEEEeeeCCCCCccceEEEEEEe
Q psy7941 175 -EDNKEIIVRSNPPSSQKVFSVE---SEVLSLTKVT-RSEMGAYQCIAANGVPPTVSKRLMLHVHC 235 (238)
Q Consensus 175 -~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~-~~d~G~y~C~~~n~~g~~~~~~~~l~V~~ 235 (238)
++...+... ......... ...|.|.++. .+|.|.|+|.|.|..|.. ...+.|.|..
T Consensus 123 ~~~~~~~~~~----~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~ 183 (184)
T 3b5h_A 123 DSEDKALMNG----SESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSD-QAIITLRVRS 183 (184)
T ss_dssp SSSCEECCTT----GGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEE-EEEEEEEEC-
T ss_pred CCCCEEeecC----CCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcc-eEEEEEEEec
Confidence 333322110 001112211 2379999999 899999999999999954 6778888764
No 71
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=99.90 E-value=9.6e-23 Score=153.83 Aligned_cols=185 Identities=22% Similarity=0.366 Sum_probs=126.0
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccE
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARL 90 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 90 (238)
+...+..+.+.+|+++.|.|.+.+.. +...+.|++.++.... ...++
T Consensus 92 ~~~~~~~~~v~~g~~v~L~C~~~~~~-------------------------~~~~v~W~~~~~~~~~--------~~~~~ 138 (289)
T 3ejj_X 92 WNLLAQEVTVVEGQEAVLPCLITDPA-------------------------LKDSVSLMREGGRQVL--------RKTVY 138 (289)
T ss_dssp EEESCSEEEEETTSCEEECEEESCGG-------------------------GGGSEEEEEGGGEECC--------TTCCE
T ss_pred eecccceEEEecCCceEeEEEccCCC-------------------------cceEEEEEecCCeecC--------CCccE
Confidence 56667888999999999999986311 1224999986554332 23344
Q ss_pred EEEEcCCCeEEEEEcccCcccCeEEEEEEecCC--CcceeeEEEEE----cCCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941 91 SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP--MTKQMAFLEVV----IPPDISSEETSGDMMVPEGGSAKLVCKAKG 164 (238)
Q Consensus 91 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~----~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~ 164 (238)
...... +|.|.+++.+|+|.|+|.+.+.. .....+.+.|. .+|.+... +....+.+|+.+.|.|.+.+
T Consensus 139 ~~~~~~----~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~--~~~~~~~~g~~~~l~C~~~~ 212 (289)
T 3ejj_X 139 FFSPWR----GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLE--PSKLVRIRGEAAQIVCSATN 212 (289)
T ss_dssp EEETTT----EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEE--SSSEECCSSSCEEEEEEEEE
T ss_pred EECCCC----CEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEec--CCceEEEeCCcEEEEEEeCC
Confidence 433222 79999999999999999997432 23445667777 34444332 34455678999999999988
Q ss_pred -ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 165 -YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 165 -~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
.|.+.+.|++ ++..+........ ........+.|.|.++..+|.|.|+|.|.|..|.. ++++.|.+..++
T Consensus 213 ~~p~~~i~W~~-~~~~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~s~~L~~~~~~ 283 (289)
T 3ejj_X 213 AEVGFNVILKR-GDTKLEIPLNSDF-QDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTR-TATMNFQVVESH 283 (289)
T ss_dssp SSSCCEEEEEE-TTEECCCCEEEEE-CSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEE-EEEEEEECC---
T ss_pred CCCceEEEEEE-CCEEeeccCCccc-ccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCc-cccEEEEEEecc
Confidence 7899999999 4443321110000 01112234579999999999999999999999944 888888877654
No 72
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=99.90 E-value=2e-22 Score=158.90 Aligned_cols=187 Identities=24% Similarity=0.403 Sum_probs=135.8
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN 87 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 87 (238)
+|.+...+..+.+.+|+++.|.|.+.+ .|.+.+.|++++..+... ...
T Consensus 121 p~~~~~~~~~~~~~~G~~v~l~C~~~~--------------------------~p~~~v~W~~~~~~~~~~------~~~ 168 (403)
T 3laf_A 121 PLRFLSQTESITAFMGDTVLLKCEVIG--------------------------DPMPTIHWQKNQQDLNPI------PGD 168 (403)
T ss_dssp CCEECSCCCCEEEETTSCEEECCCEEC--------------------------SSCCEEEEEESSSBCCCC------TTC
T ss_pred CCccccCCCcEEEEcCCeEEEEEEEcc--------------------------cCCCeEEEEECCEecccc------CCc
Confidence 567777788889999999999999853 346679999987654211 112
Q ss_pred ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEcCCccc----ccccCCceeecCCCcEEEEEE
Q psy7941 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIPPDIS----SEETSGDMMVPEGGSAKLVCK 161 (238)
Q Consensus 88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~~~~----~~~~~~~~~~~~g~~~~l~C~ 161 (238)
.++..... .+|.|.+++.+|+|.|+|.+.+... ....+.+.|...|... ....+....+.+|+.+.|.|.
T Consensus 169 ~~~~~~~~----~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~ 244 (403)
T 3laf_A 169 SRVVVLPS----GALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECC 244 (403)
T ss_dssp CSEEECTT----SCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCE
T ss_pred eEEEEcCC----ceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEE
Confidence 22222111 2799999999999999999987533 2345667777666432 222344567789999999999
Q ss_pred EccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 162 AKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 162 ~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
+.+.|.+.+.|++ ++..+... ........+..|.|.++..+|.|.|+|.|.|..| ..+.++.|.|..+|
T Consensus 245 ~~~~p~~~~~W~~-~~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~V~~~p 313 (403)
T 3laf_A 245 VSGYPPPSFTWLR-GEEVIQLR-----SKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNE-NISASAELTVLVPP 313 (403)
T ss_dssp EEEESCCEEEEEE-TTEECCCS-----SSSEEEETTTEEEECSCCGGGCEEEEEEEEETTE-EEEEEEEEEEEEEE
T ss_pred cCCCCCCeEEEEE-CCeeccCC-----CceEEECCccEEEEeCCCHHHCEEEEEEEEcCCC-ceEEEEEEEEECCC
Confidence 9999999999999 55443221 1222334456899999999999999999999998 44888889998876
No 73
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=99.90 E-value=1e-21 Score=147.58 Aligned_cols=201 Identities=18% Similarity=0.254 Sum_probs=125.4
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eeeee-e
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLAIH-E 81 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~~-~ 81 (238)
..+.+...+..+.+.+|+++.|.|.+.. .|.+.+.|++++... ..... .
T Consensus 11 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~--------------------------~p~~~i~W~r~~~~~~~~~~~~~~~~ 64 (276)
T 3auv_A 11 GDIQMTQSPSSLSASVGDRVTITCRASQ--------------------------DVSTAVAWYQQKPGKAPKLLIYSASF 64 (276)
T ss_dssp -CCCEEEECSEEECCTTCCEEEEEEESS--------------------------CCTTCEEEEEECTTSCCEEEEETTTE
T ss_pred cceeEEeCCCeEEEcCCCCEEEEeEcCC--------------------------CCCCcEEEEEECCCCCCEEEEEEcCc
Confidence 3567788899999999999999999853 335679999965311 11100 0
Q ss_pred eEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEcCCc-------------ccccccCC
Q psy7941 82 HVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIPPD-------------ISSEETSG 146 (238)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~~-------------~~~~~~~~ 146 (238)
.......|+.+.. ....++|.|.+++.+|+|.|+|.+.+... ....+.|.|..++. +.. ..+.
T Consensus 65 ~~~~~~~r~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~-~~p~ 142 (276)
T 3auv_A 65 LYSGVPSRFSGSG-SGTDFTLTISSLQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQL-VESG 142 (276)
T ss_dssp ECTTCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEE-EEEC
T ss_pred cCCCCCCCEEEec-cCCeEEEEEccCChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEE-ECCC
Confidence 0011245777654 34566999999999999999999976532 22335666665431 211 1234
Q ss_pred ceeecCCCcEEEEEEEcccc--CCeEEEEeCC-Ceee--Eee-c--------CCCCCcceEEEe-----eceEEEEEeec
Q psy7941 147 DMMVPEGGSAKLVCKAKGYP--TPKITWRRED-NKEI--IVR-S--------NPPSSQKVFSVE-----SEVLSLTKVTR 207 (238)
Q Consensus 147 ~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~~-~~~~--~~~-~--------~~~~~~~~~~~~-----~~~l~i~~~~~ 207 (238)
...+.+|+.+.|.|.+.+.| .+.+.|++++ +... ... . ......+..... ...|.|.++..
T Consensus 143 ~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 222 (276)
T 3auv_A 143 GGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRA 222 (276)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred ceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCCh
Confidence 56788999999999998865 5899999953 2111 110 0 001112222221 23799999999
Q ss_pred CCCeEEEEEeeeCC---C-CCccceEEEEEEe
Q psy7941 208 SEMGAYQCIAANGV---P-PTVSKRLMLHVHC 235 (238)
Q Consensus 208 ~d~G~y~C~~~n~~---g-~~~~~~~~l~V~~ 235 (238)
+|+|.|+|.+.|.. + ........|.|..
T Consensus 223 ~DsG~Y~C~a~n~~~~~~~~~fg~gt~l~V~~ 254 (276)
T 3auv_A 223 EDTAVYYCARFVFFLPYAMDYWGQGTLVTVSS 254 (276)
T ss_dssp GGCEEEEEEEECSSTTCSCCCBCCCEEEEEC-
T ss_pred hHCEEEEEEEEcCcCCcCceEECCCEEEEEcc
Confidence 99999999999973 2 1223345566654
No 74
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=99.90 E-value=3.6e-21 Score=137.88 Aligned_cols=185 Identities=14% Similarity=0.142 Sum_probs=115.7
Q ss_pred cCCCccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee
Q psy7941 2 VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE 81 (238)
Q Consensus 2 ~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~ 81 (238)
|.-...+|.|...+. ..+.+|++++|.|.+.. +.+.+.|+|++..+......
T Consensus 2 v~~~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~---------------------------~~~~~~w~k~g~~~~~~~~~ 53 (201)
T 1nkr_A 2 HEGVHRKPSLLAHPG-PLVKSEETVILQCWSDV---------------------------MFEHFLLHREGMFNDTLRLI 53 (201)
T ss_dssp -----CCCEEEEESC-SEEETTCCEEEEEEESS---------------------------CCSEEEEEEESSSCEEEEEE
T ss_pred ccCcCCCCeEEEEcC-CccCCCCcEEEEEeccC---------------------------CCCEEEEEECCCcCCcceee
Confidence 333345677776665 67889999999999852 24569999987654321100
Q ss_pred eEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC------CcceeeEEEEEcC---CcccccccCCceeecC
Q psy7941 82 HVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP------MTKQMAFLEVVIP---PDISSEETSGDMMVPE 152 (238)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~------~~~~~~~l~v~~~---~~~~~~~~~~~~~~~~ 152 (238)
.++ ........|.|.+++.+|+|.|+|.+.+.. ..+..+.|.|... |.+... +. ..+.+
T Consensus 54 ------~~~---~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~--p~-~~v~~ 121 (201)
T 1nkr_A 54 ------GEH---HDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQ--PG-PTVLA 121 (201)
T ss_dssp ------CEE---ETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEE--SC-SEECT
T ss_pred ------eec---CCCCceEEEEeccCCcccCeEEEEeEecCCCCccccCCCCCEEEEeeccCCCCceecC--CC-CccCC
Confidence 000 011122389999999999999999996531 1234556777643 233221 22 35789
Q ss_pred CCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceE-EEeeceEEEEEeecCCCeEEEEEeeeCC----CCCccc
Q psy7941 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVF-SVESEVLSLTKVTRSEMGAYQCIAANGV----PPTVSK 227 (238)
Q Consensus 153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~n~~----g~~~~~ 227 (238)
|+.+.|.|.+.+ +.+.+.|++++......... .... ......|.|.++. |+|.|+|.|.+.. ....+.
T Consensus 122 G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~----~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~~~~~~~s~~S~ 194 (201)
T 1nkr_A 122 GENVTLSCSSRS-SYDMYHLSREGEAHERRLPA----GPKVNGTFQADFPLGPAT--HGGTYRCFGSFHDSPYEWSKSSD 194 (201)
T ss_dssp TCEEEEEEEESS-CCSEEEEEETTCSSCEEEEC----EEEETTEEEEEEEEEECC--SCEEEEEEEEETTEEEEECCCCC
T ss_pred CCeEEEEEeCCC-CCceEEEEECCcccCccccc----ccccCCceEEEEEeCCcC--CCeeEEEEEEcCCCCCcCCCCCC
Confidence 999999999886 56799999954332211100 0000 0124579999998 9999999999653 224466
Q ss_pred eEEEEE
Q psy7941 228 RLMLHV 233 (238)
Q Consensus 228 ~~~l~V 233 (238)
.+.|.|
T Consensus 195 ~~~l~V 200 (201)
T 1nkr_A 195 PLLVSV 200 (201)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 777765
No 75
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=99.90 E-value=1.1e-22 Score=147.42 Aligned_cols=180 Identities=18% Similarity=0.163 Sum_probs=120.0
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
.+|.|...+. ..+.+|++++|.|.+.. +.+.+.|+|++..+....
T Consensus 8 ~~P~i~~~p~-~~v~~G~~vtL~C~~~~---------------------------~~~~~~W~k~g~~~~~~~------- 52 (218)
T 1uct_A 8 PMPFISAKSS-PVIPLDGSVKIQCQAIR---------------------------EAYLTQLMIIKNSTYREI------- 52 (218)
T ss_dssp CCCCEEESSC-SEEETTCCEEEEECCCT---------------------------TCSEEEEEEEETTEEEEC-------
T ss_pred CCCEEEecCC-CccCCCCCEEEEEEcCC---------------------------CCCEEEEEECCCcccccc-------
Confidence 5677777776 47899999999999852 245699999866542210
Q ss_pred CccEEEEEcCCCeE--EEEEcccCcccCeEEEEEEecCCC---cceeeEEEEEc---CCcccccccCCceeecCCCcEEE
Q psy7941 87 NARLSVTHNDANTW--TLNIRSVRREDRGYYMCQVNTNPM---TKQMAFLEVVI---PPDISSEETSGDMMVPEGGSAKL 158 (238)
Q Consensus 87 ~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l~v~~---~~~~~~~~~~~~~~~~~g~~~~l 158 (238)
.+. ....... +|.|.+++.+|+|.|+|.+.+... .+....|.|.. +|.+.. .+ ...+.+|+.+.|
T Consensus 53 -~~~---~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~l~V~~~~~~P~i~~--~p-~~~v~~G~~v~L 125 (218)
T 1uct_A 53 -GRR---LKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSA--DR-GLVLMPGENISL 125 (218)
T ss_dssp -SEE---CC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEEECSSCCCEEEE--SS-CSEECTTCCCEE
T ss_pred -ccc---CCCCcceeeEEEEcccccccCEEEEEEEEcCCCceeecCCEEEEEcCcccCCEEEe--CC-CCccCCCCCEEE
Confidence 000 0011122 799999999999999999987532 23345566664 222322 12 346789999999
Q ss_pred EEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC----CCccceEEEEEE
Q psy7941 159 VCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP----PTVSKRLMLHVH 234 (238)
Q Consensus 159 ~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g----~~~~~~~~l~V~ 234 (238)
.|...+.|.+.+.|++++ ..+.. ..........|.|.++..+|+|.|+|.|.|..+ ...+..+.|.|.
T Consensus 126 ~C~~~~~~~~~~~W~k~g-~~~~~-------~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~ 197 (218)
T 1uct_A 126 TCSSAHIPFDRFSLAKEG-ELSLP-------QHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVT 197 (218)
T ss_dssp EEECSSSCCSEEEEEETT-CSSCC-------SEEECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC
T ss_pred EEeCCCCCCCEEEEEECC-Ccccc-------cccCCCccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEe
Confidence 997767778899999954 33321 011122345799999999999999999998642 345778888887
Q ss_pred ee
Q psy7941 235 CT 236 (238)
Q Consensus 235 ~~ 236 (238)
.+
T Consensus 198 g~ 199 (218)
T 1uct_A 198 DS 199 (218)
T ss_dssp --
T ss_pred cC
Confidence 53
No 76
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=99.89 E-value=3.1e-22 Score=145.27 Aligned_cols=196 Identities=23% Similarity=0.321 Sum_probs=120.1
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee---E----eec
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH---V----ITN 86 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~---~----~~~ 86 (238)
.+..+.+..|+++.|.|.+....... ...+.|+|+++......... . ...
T Consensus 7 vp~~V~~~~G~~v~L~C~~~~~~~~~-----------------------~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~ 63 (225)
T 4fmk_A 7 VLPEVRGRLGGTVELPCHLLPPTTER-----------------------VSQVTWQRLDGTVVAAFHPSFGVDFPNSQFS 63 (225)
T ss_dssp CCSEEEEETTSCEEECCEECSSCCCE-----------------------EEEEEEECTTSCEEEEEETTTEEECCCTTSC
T ss_pred eCCEEEEecCCCEEEEEEEECCCCCc-----------------------eeEEEEEECCCcceEEEecccceeecccccc
Confidence 35568899999999999996533221 12489999876554322110 0 011
Q ss_pred CccEEEEE------cCCCeEEEEEcccCcccCeEEEEEEecCCCcce--eeEEEEEcCCcccccccCCceeecCCCcEEE
Q psy7941 87 NARLSVTH------NDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ--MAFLEVVIPPDISSEETSGDMMVPEGGSAKL 158 (238)
Q Consensus 87 ~~~~~~~~------~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l 158 (238)
..+..... .....++|.|.+++.+|+|.|+|.+.+...... ...+.+..++..... ........++.+.+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 141 (225)
T 4fmk_A 64 KDRLSFVRARPETNADLRDATLAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAE--AQEVTIGPQSVAVA 141 (225)
T ss_dssp TTTEEECCCSCSCCSSCCBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEE--ECCBCCSSSCEEEE
T ss_pred ccceeeeccccccccccCcEEEEEccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeec--ccceeecceeeeee
Confidence 22222211 122456899999999999999999976433222 233445555544332 22234556677777
Q ss_pred EEEE-ccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC-ccceEEEEEEe
Q psy7941 159 VCKA-KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT-VSKRLMLHVHC 235 (238)
Q Consensus 159 ~C~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~-~~~~~~l~V~~ 235 (238)
.|.+ .+.|.+.+.|+++++............... ....+.|.|..+..+|.|.|+|.|.|..|.. .+.+++|.|++
T Consensus 142 ~c~~~~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~Y 219 (225)
T 4fmk_A 142 RCVSTGGRPPARITWISSLGGEAKDTQEPGIQAGT-VTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVRY 219 (225)
T ss_dssp EEEEEEEBSCCEEEEECSSCCEEEEEEEECSSTTC-EEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBTT
T ss_pred eeeecCCCCCCEEEEEECCccccCCcceEEecCCC-EEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEEE
Confidence 7765 558888999998655443322211111111 1123469999999999999999999998743 35567776654
No 77
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.89 E-value=2.1e-22 Score=158.44 Aligned_cols=174 Identities=20% Similarity=0.350 Sum_probs=126.1
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEE
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTH 94 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (238)
+....+.+|+++.|.|.+.+ .|.+.+.|++++..+... ...++...
T Consensus 219 ~~~~~~~~G~~v~l~C~~~g--------------------------~p~~~i~W~~~g~~~~~~-------~~~~~~~~- 264 (395)
T 1bih_A 219 SKDMMAKAGDVTMIYCMYGS--------------------------NPMGYPNYFKNGKDVNGN-------PEDRITRH- 264 (395)
T ss_dssp CCSEEEETTSCEEEEEEEEC--------------------------SSCCCCEEEETTEECCCC-------TTSSEESC-
T ss_pred CCceEEECCCcEEEEEEecc--------------------------CCCCeEEEEECCEEcCCC-------CceeEEEE-
Confidence 56678999999999999853 346679999987654221 11222211
Q ss_pred cCCCeEEEEEcccCcccCeEEEEEEecCCCc-ce-eeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCeEEE
Q psy7941 95 NDANTWTLNIRSVRREDRGYYMCQVNTNPMT-KQ-MAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITW 172 (238)
Q Consensus 95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~-~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W 172 (238)
......+|.|.+++.+|+|.|+|.+.+.... .. .+.|.|..+|.+..... ....+.+|+.+.|.|.+.|.|.|.+.|
T Consensus 265 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~-~~~~~~~g~~~~l~C~~~g~p~p~v~W 343 (395)
T 1bih_A 265 NRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPE-KVIVVKQGQDVTIPCKVTGLPAPNVVW 343 (395)
T ss_dssp SSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCC-SEEEECTTSCEEEECEEEEESCCCCEE
T ss_pred ecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCC-cceEecCCCeEEEEEEECcccCCeeEE
Confidence 1112238999999999999999999875433 22 66788887777654321 226788999999999999999999999
Q ss_pred EeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941 173 RREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233 (238)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V 233 (238)
++ ++..+.. .. ....++.|.|.++..+|.|.|+|.|.|..|.. +.++.|.|
T Consensus 344 ~~-~g~~~~~-------~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~V 394 (395)
T 1bih_A 344 SH-NAKPLSG-------GR-ATVTDSGLVIKGVKNGDKGYYGCRATNEHGDK-YFETLVQV 394 (395)
T ss_dssp EE-TTEECCS-------SS-EEEETTEEEESSCCSTTCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred EE-CCEECCC-------Cc-eEEECCEEEEeeCCcccCEEEEEEEEccCCCc-eEEEEEEE
Confidence 99 5554421 11 22344589999999999999999999999944 67777766
No 78
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=99.89 E-value=2.1e-22 Score=157.85 Aligned_cols=174 Identities=21% Similarity=0.350 Sum_probs=129.1
Q ss_pred ccceec-cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 8 EPDFLY-PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 8 ~p~~~~-~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
+|.+.. .+....+.+|+++.|.|.+.+ .|.+.+.|++++..+..
T Consensus 206 ~P~~~~~~~~~~~~~~G~~v~l~C~~~g--------------------------~p~~~i~W~~~~~~~~~--------- 250 (382)
T 1cs6_A 206 APSIKAKFPADTYALTGQMVTLECFAFG--------------------------NPVPQIKWRKLDGSQTS--------- 250 (382)
T ss_dssp EEEEEECCCSEEEEETTCCEEEECEEEE--------------------------ESCCEEEEEECCSCCSC---------
T ss_pred CCceeccCCCceEEeCCCeEEEEEEEcc--------------------------CCCCEEEEEECCccccc---------
Confidence 455543 356788999999999999853 34567999998765321
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccc
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY 165 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~ 165 (238)
++ ......|.|.+++.+|+|.|+|.+.+.. .....+.|.|..+|.+... .....+..|+.+.|.|.+.|.
T Consensus 251 --~~-----~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~--~~~~~~~~g~~~~l~C~~~g~ 321 (382)
T 1cs6_A 251 --KW-----LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDV--ITDTEADIGSDLRWSCVASGK 321 (382)
T ss_dssp --CC-----SBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEC--CCCEEEETTCCEEEECEEEEE
T ss_pred --EE-----ecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCcccC--CCccEEcCCCeEEEEEEeeee
Confidence 00 1112289999999999999999997753 3444566777777665432 344678899999999999999
Q ss_pred cCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941 166 PTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 166 p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
|.|.+.|++ ++..+... .. ....++.|.|.++..+|.|.|+|.|.|..|.. ..++.|.|.
T Consensus 322 p~p~v~W~~-~g~~~~~~------~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~ 381 (382)
T 1cs6_A 322 PRPAVRWLR-DGQPLASQ------NR-IEVSGGELRFSKLVLEDSGMYQCVAENKHGTV-YASAELTVQ 381 (382)
T ss_dssp SCCEEEEEE-TTEECCCC------SS-EEEETTEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred cCCEEEEEE-CCEECCCC------ce-EEEECCEEEECcCCcccCEEEEEEEEeCCCeE-EEEEEEEEe
Confidence 999999999 55544321 11 22345689999999999999999999999944 778888875
No 79
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=154.68 Aligned_cols=193 Identities=15% Similarity=0.307 Sum_probs=126.8
Q ss_pred eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee------eEe--ecCc
Q psy7941 17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE------HVI--TNNA 88 (238)
Q Consensus 17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~------~~~--~~~~ 88 (238)
.+.+.+|+++.|.|.+... .+.+.++|+|++......... ... ....
T Consensus 8 ~vtv~~G~~v~L~C~v~~~-------------------------~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (308)
T 4fom_A 8 HVTAVWGKNVSLKCLIEVN-------------------------ETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQG 62 (308)
T ss_dssp SCEEETTSCEEECCBCCCS-------------------------SCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTT
T ss_pred EeEEEcCCcEEEEEEecCC-------------------------CCCcEEEEEECCCCCCceEEEecCCCCceecCcccc
Confidence 5788999999999998531 224569999976543221110 001 1134
Q ss_pred cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEE-ccc
Q psy7941 89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKA-KGY 165 (238)
Q Consensus 89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~ 165 (238)
|+..........+|.|.+++.+|+|.|+|.+.+... ....+.+.+...+.+.....+.......|+.+.|.|.+ .|.
T Consensus 63 r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~ 142 (308)
T 4fom_A 63 RVLFKNYSLNDATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGK 142 (308)
T ss_dssp TEEESCCSSSBCCEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEB
T ss_pred eEEeeccCCCceEEEEccCCHHHCEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCc
Confidence 454443334556899999999999999999977533 33445566666666554444445556678899999986 679
Q ss_pred cCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC-ccceEEEEEEeec
Q psy7941 166 PTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT-VSKRLMLHVHCTY 237 (238)
Q Consensus 166 p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~-~~~~~~l~V~~~p 237 (238)
|.+.+.|++++.. +.......... .....+.|.|..+..+|.|.|+|.|.|..|.. .+.++.|.|..+|
T Consensus 143 P~~~i~W~~~~~~-~~~~~~~~~~~--~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P 212 (308)
T 4fom_A 143 PVAHIDWEGDLGE-MESTTTSFPNE--TATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAP 212 (308)
T ss_dssp SCCEEEECCCSSB-CCEEEEECTTS--CEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEE
T ss_pred CCceEEEEECCcc-cccccceeeee--cccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCC
Confidence 9999999995443 32211111111 11223368899999999999999999988743 3456677777665
No 80
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=99.89 E-value=1.4e-22 Score=154.20 Aligned_cols=180 Identities=18% Similarity=0.315 Sum_probs=120.1
Q ss_pred cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCc
Q psy7941 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNA 88 (238)
Q Consensus 9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ 88 (238)
|.+...+....+..|+++.|.|.+.. .|.+.+.|++++..+.... ...
T Consensus 109 p~i~~~~~~~~v~~g~~v~l~C~~~g--------------------------~p~~~v~W~k~~~~~~~~~------~~~ 156 (304)
T 2yd9_A 109 PNIDMGPQLKVVERTRTATMLCAASG--------------------------NPDPEITWFKDFLPVDPSA------SNG 156 (304)
T ss_dssp CEEEECCCCEEEETTSCEEECCEEEC--------------------------SSCCEEEEEETTEECCGGG------GTT
T ss_pred CeeecCCccEEEeCCCeEEEEEECcc--------------------------CCCCeEEEEECCEECcCCC------Ccc
Confidence 67777788888999999999999853 3466899999876542210 111
Q ss_pred cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcce--eeEEEEEc---CCcccccccCCceeecCCCcEEEEEEEc
Q psy7941 89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ--MAFLEVVI---PPDISSEETSGDMMVPEGGSAKLVCKAK 163 (238)
Q Consensus 89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~l~v~~---~~~~~~~~~~~~~~~~~g~~~~l~C~~~ 163 (238)
++..... ..|.|.+++.+|+|.|+|.+.+...... .+.+.|.. +|.+.. .+....+.+|+.+.|.|.+.
T Consensus 157 ~~~~~~~----~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~--~~~~~~v~~G~~v~l~C~~~ 230 (304)
T 2yd9_A 157 RIKQLRS----GALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSI--LPMSHEIMPGGNVNITCVAV 230 (304)
T ss_dssp SEEECTT----SCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEE--CCCCBCCCTTCCEEEEEEEE
T ss_pred eEEeCCC----eEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEe--cCCceEEcCCCeEEEEEEEe
Confidence 2222111 2899999999999999999987643222 24566653 333332 23345678899999999999
Q ss_pred cccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 164 GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 164 ~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
|.|.|.+.|++ ++..+..... . ..+.+.+.....+|+|.|+|.|.|..|.. +.++.|.|..+|
T Consensus 231 g~p~p~v~W~~-~~~~l~~~~~-------~--~~~~~~L~i~~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~~~ 293 (304)
T 2yd9_A 231 GSPMPYVKWMQ-GAEDLTPEDD-------M--PVGRNVLELTDVKDSANYTCVAMSSLGVI-EAVAQITVKSLP 293 (304)
T ss_dssp EESCCEEEEEE-TTEECSCSSS-------C--CBSEEEEEECSCCSCEEEEEEEEETTEEE-EEEEEEC-----
T ss_pred eeCCCEEEEEE-CCEECCCccc-------c--cCCcEEEEEcccccCEEEEEEEEeCCCcE-EEEEEEEEecCc
Confidence 99999999999 5554432110 0 12233333344479999999999999954 788889888765
No 81
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=99.89 E-value=9.7e-22 Score=141.96 Aligned_cols=184 Identities=20% Similarity=0.239 Sum_probs=117.1
Q ss_pred cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce---eeeee--eeeE
Q psy7941 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK---AVLAI--HEHV 83 (238)
Q Consensus 9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~---~~~~~--~~~~ 83 (238)
|.+..++..+.+.+|+++.|.|.+... |.+.+.|+|.... ..... ....
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~--------------------------~~~~v~W~k~~~~~~~~~~~~~~~~~~ 55 (213)
T 3r06_A 2 IQMTQSPSSLPASLGDRVTINCQASQD--------------------------ISNYLNWYQQKPGKAPKLLIYYTNKLA 55 (213)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEESSC--------------------------CTTCEEEEEECTTSCCEEEEETTTEEC
T ss_pred CeeEeCCCEEEecCCCcEEEEEEeCCC--------------------------cCceEEEEEECCCCCcEEEEEEcCcCC
Confidence 567777889999999999999999642 3567999984311 11100 0111
Q ss_pred eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEE---cCCcccccccCCceeecCCCcEEE
Q psy7941 84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVV---IPPDISSEETSGDMMVPEGGSAKL 158 (238)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~---~~~~~~~~~~~~~~~~~~g~~~~l 158 (238)
.....|+.+.. ....++|.|.+++.+|+|.|+|.+.+... ....+.+.|. .+|.+... +....+..|+.+.|
T Consensus 56 ~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~--~~~~~~~~~~~v~l 132 (213)
T 3r06_A 56 DGVPSRFSGSG-SGRDSSFTISSLESEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIF--PPSSEQLGTGSATL 132 (213)
T ss_dssp TTCCTTEEEEE-ETTEEEEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEE--CCCHHHHTTTEEEE
T ss_pred CCCCCcEEEec-cCCEEEEEECCCCcccCEEEEEecccCCceEEcCCceEEEeccCCCceeeee--CCCceecCCCCcEE
Confidence 11245777663 34667999999999999999999976532 2334556663 33433322 22223446778999
Q ss_pred EEEEccccC--CeEEEEeCCCeeeEee----cCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 159 VCKAKGYPT--PKITWRREDNKEIIVR----SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 159 ~C~~~~~p~--~~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
.|.+.+.++ +.+.|++ ++..+... ................|.+.....+|.|.|+|.|.|...
T Consensus 133 ~C~~~g~~p~~~~v~W~k-~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~ 201 (213)
T 3r06_A 133 VCFVNNFYPKDINVKWKV-DGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTS 201 (213)
T ss_dssp EEEEEEEBSSCEEEEEEE-TTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTC
T ss_pred EEEEeeecCCceEEEEEE-CCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEeccc
Confidence 999988554 3899999 55544321 000010111112223577888888899999999999875
No 82
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.89 E-value=1.6e-22 Score=141.81 Aligned_cols=165 Identities=15% Similarity=0.152 Sum_probs=109.0
Q ss_pred ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-eeEeecCccEEEEE
Q psy7941 16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-EHVITNNARLSVTH 94 (238)
Q Consensus 16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~ 94 (238)
..+.+.+|+++.|.|.... ...+.+.+.|+|++..+..... ...+...+|+.+..
T Consensus 4 ~~v~~~~G~~v~L~c~~~~------------------------~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~ 59 (176)
T 1hng_A 4 GTVWGALGHGINLNIPNFQ------------------------MTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILA 59 (176)
T ss_dssp EEEEEETTSCEEECCTTCC------------------------CCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECT
T ss_pred eEEEEEcCCcEEEcCCCCC------------------------cccccccEEEEeCCceeEEEcCCCeecCCCCeEEECC
Confidence 4577889999999994211 1123557999998754322111 11123356666633
Q ss_pred cCCCeEEEEEcccCcccCeEEEEEEecCCCc---ceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCeEE
Q psy7941 95 NDANTWTLNIRSVRREDRGYYMCQVNTNPMT---KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKIT 171 (238)
Q Consensus 95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~ 171 (238)
.. +|.|.+++.+|+|.|+|.+.+.... ...+.|.|..++..+ .+ ...+..+.|.|.+.|.|.|.+.
T Consensus 60 ~g----sL~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~~~l~V~~~~~~p------~i-~~~~~~v~L~C~~~g~p~p~i~ 128 (176)
T 1hng_A 60 NG----DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKP------MI-YWECSNATLTCEVLEGTDVELK 128 (176)
T ss_dssp TS----CEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEECCCCCC------EE-EEETTTTEEEEECSSCSSCEEE
T ss_pred CC----cEEEcccccccCEEEEEEEEeCCCCEEEEEEEEEEEeCCCCCC------EE-EecCCcEEEEEEecCCCCcEEE
Confidence 22 6999999999999999999875433 334556666543211 11 1224569999999999999999
Q ss_pred EEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEE
Q psy7941 172 WRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLML 231 (238)
Q Consensus 172 W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l 231 (238)
|++ ++..+... ..+.+..+..+|.|.|+|.|.|..|.. +....|
T Consensus 129 W~~-~g~~l~~~--------------~~~~i~~~~~~d~G~Y~C~a~N~~g~~-~~~~~l 172 (176)
T 1hng_A 129 LYQ-GKEHLRSL--------------RQKTMSYQWTNLRAPFKCKAVNRVSQE-SEMEVV 172 (176)
T ss_dssp EEE-TTEEEEEE--------------SSSEEEEECSCCSSCEEEEEEETTEEE-EEEECC
T ss_pred EEE-CCEECCCC--------------CcEEEEEEEccCCeEEEEEEEecCCCc-eecccc
Confidence 999 55554321 124556788999999999999999943 444433
No 83
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.89 E-value=4e-22 Score=153.22 Aligned_cols=188 Identities=15% Similarity=0.264 Sum_probs=121.3
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN 87 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 87 (238)
...|..++..+.+.+|+++.|.|.+... .|.+.+.|+|++...........-...
T Consensus 3 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~-------------------------~p~~~v~W~k~~~~~~~~i~~~~~~~~ 57 (327)
T 2wng_A 3 ELQVIQPDKSVSVAAGESAILHCTVTSL-------------------------IPVGPIQWFRGAGPARELIYNQKEGHF 57 (327)
T ss_dssp CCCEECCCSEEEEETTSCEEECCEESCC-------------------------CSCCCEEEEESCSTTCEEEEETTSSCC
T ss_pred eeEEEcCCCceEEecCCcEEEEEEccCc-------------------------CCCceEEEEECCCCCceEEEEcCCCCc
Confidence 4567788999999999999999998532 145679999987542211110000012
Q ss_pred ccEEEEEc----CCCeEEEEEcccCcccCeEEEEEEecCCCc------ceeeEEEEEcCCcccccccCCceeecCCCcEE
Q psy7941 88 ARLSVTHN----DANTWTLNIRSVRREDRGYYMCQVNTNPMT------KQMAFLEVVIPPDISSEETSGDMMVPEGGSAK 157 (238)
Q Consensus 88 ~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~------~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~ 157 (238)
.|+..... .....+|.|.+++.+|+|.|+|.+.+.... ...+.|.|..+|.......+ ...+.+|+.+.
T Consensus 58 ~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~-~~~~~~g~~~~ 136 (327)
T 2wng_A 58 PRVTTVSESTKRENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGP-AARATPQHTVS 136 (327)
T ss_dssp TTEEECC---CTTCCBCCEEECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECC-SSCBCTTCEEE
T ss_pred ceeeeecccccccCceeEEEEccCccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeecc-ccccCCCCEEE
Confidence 24443221 134558999999999999999999875432 13457888876654332222 35578899999
Q ss_pred EEEEEccccCC--eEEEEeCCCeeeEeecC---CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941 158 LVCKAKGYPTP--KITWRREDNKEIIVRSN---PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP 223 (238)
Q Consensus 158 l~C~~~~~p~~--~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~ 223 (238)
|.|.+.|.|++ .+.|++ ++..+..... ....... ....+.|.|.....+|.|.|+|.|.|..+.
T Consensus 137 l~C~~~g~p~~~~~v~W~k-~g~~l~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~ 205 (327)
T 2wng_A 137 FTCESHGFSPRDITLKWFK-NGNELSDFQTNVDPVGESVS-YSIHSTAKVVLTREDVHSQVICEVAHVTLQ 205 (327)
T ss_dssp EEEEEEEEBSSCCEEEEEE-TTEECCCEEEEEECSSCCSC-EEEEEEEEEECCTTGGGCEEEEEEECTTSC
T ss_pred EEEEEeCccCCCcEEEEEE-CCEEccccccccccccCCCc-eEEEEEEEEechhcCcCceEEEEEeccccC
Confidence 99999997766 899999 5554432110 0000111 112235777766666789999999998874
No 84
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.89 E-value=7.5e-22 Score=142.54 Aligned_cols=183 Identities=22% Similarity=0.323 Sum_probs=117.0
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-eeee-eee---eeEe
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-KAVL-AIH---EHVI 84 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~~~-~~~---~~~~ 84 (238)
.+...+..+.+.+|+++.|.|.+.+ .|.+.+.|+|++. .... ... ....
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~--------------------------~~~~~v~W~k~~~~~~~~~~~~~~~~~~~ 56 (213)
T 3d9a_L 3 VLTQSPATLSVTPGNSVSLSCRASQ--------------------------SIGNNLHWYQQKSHESPRLLIKYASQSIS 56 (213)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESS--------------------------CCTTCEEEEEECTTSCCEEEEETTTEECT
T ss_pred eEEeCCccEEEeCCCcEEEEEECCC--------------------------CCCCCEEEEEeCCCCCcEEEEEEcccccc
Confidence 3556688899999999999999853 3355699998542 1110 000 0001
Q ss_pred ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEc---CCcccccccCCceeecCCCcEEEE
Q psy7941 85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVI---PPDISSEETSGDMMVPEGGSAKLV 159 (238)
Q Consensus 85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~---~~~~~~~~~~~~~~~~~g~~~~l~ 159 (238)
....|+.... .....+|.|.+++.+|+|.|+|.+.+.... ...+.+.|.. +|.+.... .......|+.+.|.
T Consensus 57 ~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~--~~~~~~~g~~~~l~ 133 (213)
T 3d9a_L 57 GIPSRFSGSG-SGTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFP--PSSEQLTSGGASVV 133 (213)
T ss_dssp TSCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEEC--CCHHHHHTTEEEEE
T ss_pred cccccEEEEc-CCCEEEEEECCCChhhCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeEC--CChhhcCCCcEEEE
Confidence 1135676654 345669999999999999999999775332 2234566654 34333211 11223468899999
Q ss_pred EEEcc-ccCC-eEEEEeCCCeeeEee----cCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 160 CKAKG-YPTP-KITWRREDNKEIIVR----SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 160 C~~~~-~p~~-~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
|.+.| .|.+ .+.|++ ++..+... ..............+.|.|..+..+|.|.|+|.|.|...
T Consensus 134 C~~~g~~p~~~~v~W~k-~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~ 201 (213)
T 3d9a_L 134 CFLNNFYPKDINVKWKI-DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS 201 (213)
T ss_dssp EEEEEEBSSCCEEEEEE-TTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTC
T ss_pred EEEeeecCCceEEEEEc-CCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccC
Confidence 99988 6665 899999 55544321 000000110112234799999999999999999999876
No 85
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=99.89 E-value=4.1e-22 Score=156.50 Aligned_cols=196 Identities=24% Similarity=0.379 Sum_probs=131.0
Q ss_pred EecCCEEEEeEEecCCCceeeeeeee---------------eeeecCCeEEeccCC----CCceEEEEeCCceeeeeeee
Q psy7941 21 AQGRDAIFTCVVNNLGGHRVSSSVTD---------------THVNTGGSIVFPTDS----SAMKVAWIKADTKAVLAIHE 81 (238)
Q Consensus 21 ~~g~~~~l~C~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~----~~~~~~W~~~~~~~~~~~~~ 81 (238)
...|.+.|+|.+.|..|...+..+.. ..+..|+.+.+.|.. |.+.+.|++++.....
T Consensus 71 ~~~D~G~Y~C~A~N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~---- 146 (384)
T 3kld_A 71 KTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQ---- 146 (384)
T ss_dssp HHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCC----
T ss_pred CcccCEEEEEEEEcCcccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEe----
Confidence 34689999999999876544332222 224567888888864 4578999998754321
Q ss_pred eEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcce----eeEEEEE-------cCCcccccccCCceee
Q psy7941 82 HVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ----MAFLEVV-------IPPDISSEETSGDMMV 150 (238)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~----~~~l~v~-------~~~~~~~~~~~~~~~~ 150 (238)
+.+.... ....+|.|.+++.+|+|.|+|.+.|...... ...+.+. ..|.+.. ..+....+
T Consensus 147 -----~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~-~~~~~~~~ 217 (384)
T 3kld_A 147 -----DNRRFVS---QETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEV-QFPETVPA 217 (384)
T ss_dssp -----SSSEEEC---TTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEE-ECCSEEEE
T ss_pred -----eccEEEE---cCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceee-cCCCceEe
Confidence 1111111 1122799999999999999999987533211 1122222 1122211 12344667
Q ss_pred cCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEE
Q psy7941 151 PEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLM 230 (238)
Q Consensus 151 ~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~ 230 (238)
.+|+.+.|.|.+.|.|.|.+.|+++++..+.. .......++.|.|.++..+|+|.|+|.|.|..|.. .....
T Consensus 218 ~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~-------~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~ 289 (384)
T 3kld_A 218 EKGTTVKLECFALGNPVPTILWRRADGKPIAR-------KARRHKSNGILEIPNFQQEDAGSYECVAENSRGKN-VAKGQ 289 (384)
T ss_dssp ETTSCEEEEEEEEEESCCEEEEEETTCCCCCT-------TCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEE-EEEEE
T ss_pred cCCCcEEEEEEEeecCCCcEEEEeCCCccccc-------cceecCCCcEEEECCCChhhCEEEEEEEEcCCCeE-EEEEE
Confidence 89999999999999999999999966544321 11112234579999999999999999999999944 67778
Q ss_pred EEEEeec
Q psy7941 231 LHVHCTY 237 (238)
Q Consensus 231 l~V~~~p 237 (238)
|.|..+|
T Consensus 290 l~v~~~P 296 (384)
T 3kld_A 290 LTFYAQP 296 (384)
T ss_dssp EEEEEEE
T ss_pred EEEecCC
Confidence 8888766
No 86
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=99.89 E-value=2.2e-22 Score=158.01 Aligned_cols=167 Identities=23% Similarity=0.365 Sum_probs=121.9
Q ss_pred ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEc
Q psy7941 16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHN 95 (238)
Q Consensus 16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (238)
....+.+|+++.|.|.+.. .|.+.+.|++++....... ......++.....
T Consensus 220 ~~~~v~~G~~v~l~C~~~g--------------------------~p~p~v~W~~~~~~~~~~~---~~~~~~~~~~~~~ 270 (388)
T 2v5m_A 220 KPLELMVAHTISLLCPAQG--------------------------FPAPSFRWYKFIEGTTRKQ---AVVLNDRVKQVSG 270 (388)
T ss_dssp CCEEEETTSCEEECCCCEE--------------------------ESCCEEEEEEECTTSSCEE---ECCCSSSEEEETT
T ss_pred CceEEeeCCcEEEEEECCC--------------------------CCCCEEEEEecCCCCcccc---cccccCceecccC
Confidence 3456788999999999753 3467799999754321110 1112233332222
Q ss_pred CCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCeEEEEe
Q psy7941 96 DANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRR 174 (238)
Q Consensus 96 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~ 174 (238)
+|.|.+++.+|+|.|+|.+.|.. .....+.|.|..+|.+... +....+.+|+.+.|.|.+.|.|.|.+.|++
T Consensus 271 -----~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~--~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~ 343 (388)
T 2v5m_A 271 -----TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKID--PPTQTVDFGRPAVFTCQYTGNPIKTVSWMK 343 (388)
T ss_dssp -----EEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEE--SSEEEECTTSCEEEEEEEEEECCCEEEEEE
T ss_pred -----EEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccccC--CCcEEecCCCCEEEEEEeccccCCeEEEEE
Confidence 89999999999999999998763 3445566788776665432 345678899999999999999999999999
Q ss_pred CCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941 175 EDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233 (238)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V 233 (238)
++..+.. .+..|.|.++..+|.|.|+|.|.|..|.. ..++.|.|
T Consensus 344 -~g~~i~~-------------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V 387 (388)
T 2v5m_A 344 -DGKAIGH-------------SESVLRIESVKKEDKGMYQCFVRNDRESA-EASAELKL 387 (388)
T ss_dssp -TTEECSC-------------CSSEEEESSCCGGGCEEEEEEEECSSCEE-EEEEEEEE
T ss_pred -CCEECcc-------------CCCEEEEecCChhhCEEEEEEEEcCCCcE-EEEEEEEe
Confidence 5544321 23579999999999999999999999944 77777765
No 87
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=99.89 E-value=8.6e-22 Score=151.44 Aligned_cols=205 Identities=16% Similarity=0.221 Sum_probs=132.0
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee------
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE------ 81 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~------ 81 (238)
++.+...+..+.+.+|+++.|.|.+...... .+.+.+.|++++.........
T Consensus 14 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~----------------------~~~~~v~W~k~~~~~~~~i~~~~~~~~ 71 (331)
T 3u83_A 14 PSQVVQVNDSMYGFIGTDVVLHCSFANPLPS----------------------VKITQVTWQKSTNGSKQNVAIYNPSMG 71 (331)
T ss_dssp -------CEEEEEETTCCEEECCBCSSCCSS----------------------CEEEEEEEEEEETTEEEEEEEEETTTE
T ss_pred CcceEEcCCcEEEEecCCEEEeeecCCCCCC----------------------CceEEEEEEEcCCCCCceEEEEeccCC
Confidence 4456677888999999999999998642110 124569999954221111100
Q ss_pred --eEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec-C-CCcceeeEEEEEcCCcccccccCCceeecCC---C
Q psy7941 82 --HVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT-N-PMTKQMAFLEVVIPPDISSEETSGDMMVPEG---G 154 (238)
Q Consensus 82 --~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~-~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g---~ 154 (238)
......+|+.+........+|.|.+++.+|+|.|+|.+.+ . +.....+.|.|..+|.+..........+.+| +
T Consensus 72 ~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~ 151 (331)
T 3u83_A 72 VSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDK 151 (331)
T ss_dssp EEECTTCTTTEEESSCSSSBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCC
T ss_pred CCcCcccCCceEecccCCCCceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccc
Confidence 0011245665543334556899999999999999998543 2 3345566788888887654444556777778 7
Q ss_pred cEEEEEE-EccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941 155 SAKLVCK-AKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233 (238)
Q Consensus 155 ~~~l~C~-~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V 233 (238)
.+.|.|. ..+.|.+.+.|+++................ ......|.|..+..+|.|.|+|.|.|..|. .+.++.|.|
T Consensus 152 ~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~-~~~~~~l~V 228 (331)
T 3u83_A 152 VLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGT--VTVISRYRLVPSREAHQQSLACIVNYHMDR-FKESLTLNV 228 (331)
T ss_dssp EEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECTTSC--EEEEEEEEECCCGGGTTCEEEEEEEETTEE-EEEEEECCE
T ss_pred eEEEEEEecCCcCCceEEEEcCCCCccccceeECCCCc--EEEEEEEEEEeccccCCCEEEEEEecCCCc-ceeeEEEEE
Confidence 7999998 788999999999843322211111001111 122235888888999999999999999884 578888888
Q ss_pred Eeec
Q psy7941 234 HCTY 237 (238)
Q Consensus 234 ~~~p 237 (238)
..+|
T Consensus 229 ~~~P 232 (331)
T 3u83_A 229 QYEP 232 (331)
T ss_dssp EEEE
T ss_pred ecCC
Confidence 8776
No 88
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=99.89 E-value=5.5e-22 Score=144.90 Aligned_cols=193 Identities=19% Similarity=0.312 Sum_probs=119.1
Q ss_pred eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceee--eeeeeeEee--cC
Q psy7941 12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAV--LAIHEHVIT--NN 87 (238)
Q Consensus 12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~--~~~~~~~~~--~~ 87 (238)
...+..+.+.+|+++.|.|.+..... .+.+.|++++.... ......... ..
T Consensus 4 v~~p~~~~v~~G~~v~L~C~~~~~~~-------------------------~~~v~W~~~~~~~~~~~~~~~~~~~~~~~ 58 (231)
T 2pet_A 4 LSVPPLVEVMRGKSVILDCTPTGTHD-------------------------HYMLEWFLTDRSGARPRLASAEMQGSELQ 58 (231)
T ss_dssp CCCCSEEEEETTCCEEECCCCBSCCS-------------------------EEEEEEEEECTTCCCCEEEEEEEETTEEE
T ss_pred ccCCCcEEEEcCCCEEEecccCCCCC-------------------------ceEEEEEEeCCCceeEEEEeccccCCccc
Confidence 34577889999999999999864321 25699998654421 111000000 01
Q ss_pred ccEE----------EEEcCCCeEEEEEcccCcccCeEEEEEEecCC--CcceeeEEEEEcCCcccc-cccCCceeecCCC
Q psy7941 88 ARLS----------VTHNDANTWTLNIRSVRREDRGYYMCQVNTNP--MTKQMAFLEVVIPPDISS-EETSGDMMVPEGG 154 (238)
Q Consensus 88 ~~~~----------~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~~~~~~~~-~~~~~~~~~~~g~ 154 (238)
.++. +.. ...|.|.+++.+|+|.|+|.+.+.. .....+.|.|..+|.... ...+....+.+|+
T Consensus 59 ~r~~~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~ 134 (231)
T 2pet_A 59 VTMHDTRGRSPPYQLDS----QGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDS 134 (231)
T ss_dssp EEECCCSCCSSCCEECT----TCCEEESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCS
T ss_pred cccccccccccccccCC----CceEEEcccCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCC
Confidence 1111 211 1259999999999999999997753 344556788887765432 2223345566888
Q ss_pred cE-EEEEEE-ccccCCeEEEEeCCCeeeEeecCCCCCcceEE----------EeeceEEEEEeecCCCeEEEEEeeeC--
Q psy7941 155 SA-KLVCKA-KGYPTPKITWRREDNKEIIVRSNPPSSQKVFS----------VESEVLSLTKVTRSEMGAYQCIAANG-- 220 (238)
Q Consensus 155 ~~-~l~C~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~i~~~~~~d~G~y~C~~~n~-- 220 (238)
.+ .|.|.+ .+.|.|.+.|++ ++..+.............. ...+.|.+.....+|.|.|+|.|.|.
T Consensus 135 ~~~~l~C~~~~~~p~p~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~ 213 (231)
T 2pet_A 135 AQEIATCNSRNGNPAPKITWYR-NGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLP 213 (231)
T ss_dssp EEEEEEEEEEEEBSCCEEEEEE-TTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECG
T ss_pred ceEEEEEEeECcccCCEEEEEE-CCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCc
Confidence 87 999999 889999999999 5554432220000000000 00145777755555699999999994
Q ss_pred ---CCCCccceEEEEEE
Q psy7941 221 ---VPPTVSKRLMLHVH 234 (238)
Q Consensus 221 ---~g~~~~~~~~l~V~ 234 (238)
.|...++.+.|.|+
T Consensus 214 ~~~~~~~~s~~~~l~V~ 230 (231)
T 2pet_A 214 EGRHGRLDSPTFHLTLH 230 (231)
T ss_dssp GGCEEEEECCCEECCCC
T ss_pred ccccccccccceEEEEe
Confidence 45324677777665
No 89
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.89 E-value=7.4e-23 Score=157.63 Aligned_cols=186 Identities=22% Similarity=0.345 Sum_probs=123.2
Q ss_pred ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEc
Q psy7941 16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHN 95 (238)
Q Consensus 16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (238)
....+.+|+++.|.|.+. +.|.+.+.|++++..+.. ..++.....
T Consensus 131 ~~~~v~~g~~v~l~C~~~--------------------------g~p~~~v~W~~~~~~~~~---------~~~~~~~~~ 175 (334)
T 1ry7_B 131 KLLAVPAANTVRFRCPAA--------------------------GNPTPSISWLKNGREFRG---------EHRIGGIKL 175 (334)
T ss_dssp CEEEEETTCCEEEECCCC--------------------------CSSCCEEECCBTTBCCCT---------TSSTTCCCC
T ss_pred eeEEecCCCcEEEEEEcc--------------------------CCCCCeEEEEECCEECcc---------cccccceec
Confidence 346788999999999984 234678999998765321 111100011
Q ss_pred CCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCc--c-cccccCCceeecCCCcEEEEEEEccccCCeEE
Q psy7941 96 DANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPD--I-SSEETSGDMMVPEGGSAKLVCKAKGYPTPKIT 171 (238)
Q Consensus 96 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~--~-~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~ 171 (238)
.....+|.|.+++.+|+|.|+|.+.+.. .....+.|.|...+. . .....+....+..|+.+.|.|.+.|.|.|.+.
T Consensus 176 ~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~ 255 (334)
T 1ry7_B 176 RHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQ 255 (334)
T ss_dssp CTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEE
T ss_pred ccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCCCeEE
Confidence 1223489999999999999999998753 334455677765321 1 11112345678899999999999999999999
Q ss_pred EEeC---CCeeeEeecCCCCCc------ceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 172 WRRE---DNKEIIVRSNPPSSQ------KVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 172 W~~~---~~~~~~~~~~~~~~~------~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
|+++ ++..+.......... .........|.|.++..+|+|.|+|.|.|..|. ...++.|.|...|
T Consensus 256 W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~-~~~~~~l~V~~~~ 329 (334)
T 1ry7_B 256 WLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGF-SHHSAWLVVLPAE 329 (334)
T ss_dssp EEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCC-EEEEEEEEEECSC
T ss_pred EEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCe-EEEEEEEEEEECC
Confidence 9994 222221111000000 000001237999999999999999999999995 4788888888654
No 90
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=99.89 E-value=3.1e-21 Score=143.33 Aligned_cols=197 Identities=15% Similarity=0.231 Sum_probs=123.6
Q ss_pred ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--ceee--eeee------ee
Q psy7941 13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKAV--LAIH------EH 82 (238)
Q Consensus 13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~~--~~~~------~~ 82 (238)
..+..+.+.+|+++.|.|.+.... .+.+.+.|+|++ .... .... ..
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~g~~------------------------~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~ 60 (256)
T 1nqb_A 5 QQSGAELVKPGASVKLSCKASGYT------------------------FTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKY 60 (256)
T ss_dssp EECCCEEECTTCCEEEEEEECSSC------------------------GGGSCEEEEEEETTTEEEEEEEECTTTCCEEE
T ss_pred ECCCCeeecCCCcEEEEEEecccc------------------------CCCceEEEEEECCCCCcEEEEEEecCCCceee
Confidence 445668899999999999986321 014569999953 2211 1100 00
Q ss_pred EeecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCC----c--ceeeEEEEEcCCcccccccCCceeecCCCc
Q psy7941 83 VITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPM----T--KQMAFLEVVIPPDISSEETSGDMMVPEGGS 155 (238)
Q Consensus 83 ~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----~--~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~ 155 (238)
.....+|+.+.... ...++|.|.+++.+|+|.|+|.+.+... . ...+.|.|..++.+. ..+..+.+.+|+.
T Consensus 61 ~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~--~~p~~~~v~~G~~ 138 (256)
T 1nqb_A 61 NEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELT--QTPLSLPVSLGDQ 138 (256)
T ss_dssp CGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEE--EECSEEEECTTCC
T ss_pred CcccCCeEEEEEecCCCEEEEEECcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEE--ecCcEEEEecCCc
Confidence 01124677776542 4577999999999999999999977522 1 123456666554432 2345567899999
Q ss_pred EEEEEEEccccCC-----eEEEEeC--CCeee-EeecC----CCCCcceEE---EeeceEEEEEeecCCCeEEEEEeeeC
Q psy7941 156 AKLVCKAKGYPTP-----KITWRRE--DNKEI-IVRSN----PPSSQKVFS---VESEVLSLTKVTRSEMGAYQCIAANG 220 (238)
Q Consensus 156 ~~l~C~~~~~p~~-----~~~W~~~--~~~~~-~~~~~----~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~n~ 220 (238)
+.|.|.+.+.|.+ .+.|++. +.... ..... ......... .....|.|.++..+|+|.|+|.+.|.
T Consensus 139 v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~ 218 (256)
T 1nqb_A 139 ASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSH 218 (256)
T ss_dssp EEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred EEEEeEecCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccC
Confidence 9999999987764 9999993 32221 11000 000111111 12347999999999999999999985
Q ss_pred CCCCccceEEEEEEe
Q psy7941 221 VPPTVSKRLMLHVHC 235 (238)
Q Consensus 221 ~g~~~~~~~~l~V~~ 235 (238)
..........|.|..
T Consensus 219 ~~~~fg~gt~l~V~~ 233 (256)
T 1nqb_A 219 VPYTFGGGTKLEIKR 233 (256)
T ss_dssp SSCEECCCEEEEECC
T ss_pred CceEECCCEEEEEEC
Confidence 443334455566654
No 91
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=99.89 E-value=2.6e-21 Score=142.94 Aligned_cols=200 Identities=15% Similarity=0.324 Sum_probs=123.3
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--ee--eeee-----
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--AV--LAIH----- 80 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~~--~~~~----- 80 (238)
.+..+ ..+.+.+|+++.|.|.+..... +.+.+.|+|+... .. ....
T Consensus 5 ~v~~p-~~~~v~~G~~v~L~C~~~g~p~------------------------~~~~v~W~k~~~~~~~~~~~~~~~~~~~ 59 (247)
T 2ghw_B 5 QLVQS-GGGVVQPGKSLRLSCAASGFAF------------------------SSYAMHWVRQAPGKGLEWVAVISYDGSN 59 (247)
T ss_dssp EEEEE-CCEEECTTCCEEEEEEEESSCG------------------------GGSCEEEEEECTTSCEEEEEEECTTSSC
T ss_pred EEEec-CCEEEecCCcEEEEEEeccccC------------------------CCceEEEEEeCCCCceEEEEEEecCCCc
Confidence 33333 5588999999999999964210 1356999995321 11 0000
Q ss_pred -eeEeecCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCC-C--cceeeEEEEEcCC-------------ccccc
Q psy7941 81 -EHVITNNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNP-M--TKQMAFLEVVIPP-------------DISSE 142 (238)
Q Consensus 81 -~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~--~~~~~~l~v~~~~-------------~~~~~ 142 (238)
........|+.+... ....++|.|.+++.+|+|.|+|.+.+.. . ....+.|.|..++ .+.+.
T Consensus 60 ~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~ 139 (247)
T 2ghw_B 60 KYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLT 139 (247)
T ss_dssp EEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEE
T ss_pred eeeCccccCcEEEEEeCCCCEEEEEECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEE
Confidence 000112457777654 3457799999999999999999997751 1 1223456776542 11122
Q ss_pred ccCCceeecCCCcEEEEEEEccccCCeEEEEeC--CCeee-EeecC----CCCCcceEE---EeeceEEEEEeecCCCeE
Q psy7941 143 ETSGDMMVPEGGSAKLVCKAKGYPTPKITWRRE--DNKEI-IVRSN----PPSSQKVFS---VESEVLSLTKVTRSEMGA 212 (238)
Q Consensus 143 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--~~~~~-~~~~~----~~~~~~~~~---~~~~~l~i~~~~~~d~G~ 212 (238)
..+....+.+|+.+.|.|.+.+.|.+.+.|++. +.... ..... ......... .....|.|.++..+|+|.
T Consensus 140 ~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 219 (247)
T 2ghw_B 140 QSPATLSLSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAV 219 (247)
T ss_dssp EECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEE
T ss_pred ccCCEEEecCCCcEEEEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEE
Confidence 234456788999999999999988889999983 22211 11000 000111111 123369999999999999
Q ss_pred EEEEeeeCCCCCccceEEEEEE
Q psy7941 213 YQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 213 y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
|+|.|.|..+........|.|.
T Consensus 220 Y~C~a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 220 YYCQQRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp EEEEECSSSSCEECCCEEEEEC
T ss_pred EEEEEccCCCceEcCCEEEEEC
Confidence 9999998654333344455554
No 92
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=99.89 E-value=2.4e-21 Score=147.70 Aligned_cols=182 Identities=19% Similarity=0.252 Sum_probs=124.6
Q ss_pred ccceeccCc-eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 8 EPDFLYPLE-NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 8 ~p~~~~~~~-~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
.|.+...+. ...+.+|+++.|.|.+.. +.|.+.+.|++++..+. .
T Consensus 106 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~-------------------------~~p~~~v~W~~~~~~i~---------~ 151 (312)
T 2y23_A 106 FPTVPVKSELAVEILEKGQVRFWMQAEK-------------------------LSGNAKVNYIFNEKEIF---------E 151 (312)
T ss_dssp SCBCCEEEEEEEEECSSSCEEEEEEESC-------------------------CCSSCEEEEEETTEEEC---------S
T ss_pred CCccccccCCceEEeeCCCEEEEEEEEe-------------------------CCCCCEEEEEECCEECe---------e
Confidence 555554443 788999999999999851 34567899999876532 2
Q ss_pred CccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEc---------------------CCccccccc
Q psy7941 87 NARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVI---------------------PPDISSEET 144 (238)
Q Consensus 87 ~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~---------------------~~~~~~~~~ 144 (238)
..++.+.... ....+|.|.+++.+|+|.|+|.+.+... .....+.+.. +|.+..
T Consensus 152 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--- 227 (312)
T 2y23_A 152 GPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKA-TNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE--- 227 (312)
T ss_dssp SSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSC-EEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEE---
T ss_pred CCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCc-eEEEEEEEcchhhhhhcccccccccchhhccCCceee---
Confidence 3444444322 3455799999999999999999975432 2333333311 122111
Q ss_pred CCceeecCCCcEEEEEEEccccCC-eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP 223 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~ 223 (238)
.....+.+|+.+.|.|.+.+.|.| .+.|++ ++..+....... .......|.|.++..+|+|.|+|.|.|..|.
T Consensus 228 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~-~g~~~~~~~~~~-----~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~ 301 (312)
T 2y23_A 228 YLSWEVTGECNVLLKCKVANIKKETHIVWYK-DEREISVDEKHD-----FKDGICTLLITEFSKKDAGIYEVILKDDRGK 301 (312)
T ss_dssp EEEEEEETTTEEEEEEEEESCCSSCEEEEEE-TTEEEEEECCC---------CEEEEEECSCSGGGCEEEEEEEESTTCC
T ss_pred cceEEEeCCCEEEEEEEEcCCCCCCEEEEee-CCEECCCCCcEE-----EECCEEEEEECcCCHHHCEEEEEEEEcCCCc
Confidence 112567899999999999999988 999999 666554322111 1122358999999999999999999999994
Q ss_pred CccceEEEEEE
Q psy7941 224 TVSKRLMLHVH 234 (238)
Q Consensus 224 ~~~~~~~l~V~ 234 (238)
. +.++.|.|+
T Consensus 302 ~-~~~~~l~i~ 311 (312)
T 2y23_A 302 D-KSRLKLVDE 311 (312)
T ss_dssp E-EEEEEECSC
T ss_pred e-eeeeEEEec
Confidence 4 677776653
No 93
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=99.89 E-value=2.4e-21 Score=143.65 Aligned_cols=202 Identities=16% Similarity=0.284 Sum_probs=127.1
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC-ceeeeee---------
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD-TKAVLAI--------- 79 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~-~~~~~~~--------- 79 (238)
.++..+..+.+.+|+++.|.|.+.... .+.+.+.|+|.. +......
T Consensus 3 ~~~~~p~~~~v~~G~~v~L~C~~~g~~------------------------~~~~~v~W~r~~~~~~~~~~~~~~~~~~~ 58 (253)
T 3uzq_A 3 KLLEQSGAELVKPGASVRLSCTASGFN------------------------IKDTYMSWVKQRPEQGLEWIGRIDPANGD 58 (253)
T ss_dssp CCEEECCCEEECTTCCEEEEEEECSSC------------------------GGGSCEEEEEECTTCCEEEEEEEETTTTE
T ss_pred eeEecCCCeeecCCCcEEEEEEeeCCc------------------------ccCceEEEEEeCCCCCCEEEEEEccCCCc
Confidence 345677788999999999999986421 114569999942 2111111
Q ss_pred eeeEeecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEcC-------------Ccccccc
Q psy7941 80 HEHVITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVIP-------------PDISSEE 143 (238)
Q Consensus 80 ~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~~-------------~~~~~~~ 143 (238)
........+|+.+.... ...++|.|.+++.+|+|.|+|.+.+.... ...+.+.|... +...+..
T Consensus 59 ~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~ 138 (253)
T 3uzq_A 59 TKYDPKFQGKATITADTSSNTAYLHLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQ 138 (253)
T ss_dssp EEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEE
T ss_pred ceeCCcCCCcEEEEeecCCCeEEEEeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEEC
Confidence 01111224677776543 35778999999999999999999764322 23455666642 1122222
Q ss_pred cCCceeecCCCcEEEEEEEccccCC----eEEEEeCCC-e--eeEeecC----CCCCcceEE-E--eeceEEEEEeecCC
Q psy7941 144 TSGDMMVPEGGSAKLVCKAKGYPTP----KITWRREDN-K--EIIVRSN----PPSSQKVFS-V--ESEVLSLTKVTRSE 209 (238)
Q Consensus 144 ~~~~~~~~~g~~~~l~C~~~~~p~~----~~~W~~~~~-~--~~~~~~~----~~~~~~~~~-~--~~~~l~i~~~~~~d 209 (238)
.+....+.+|+++.|.|.+.+.|.+ .+.|++... . ....... ......... . ....|.|.++..+|
T Consensus 139 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 218 (253)
T 3uzq_A 139 TPASLAVSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADD 218 (253)
T ss_dssp ECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred cCCeEEEeCCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHH
Confidence 3445778999999999999987776 999998421 1 1111110 000111111 1 12369999999999
Q ss_pred CeEEEEEeeeCCCCCccceEEEEEEe
Q psy7941 210 MGAYQCIAANGVPPTVSKRLMLHVHC 235 (238)
Q Consensus 210 ~G~y~C~~~n~~g~~~~~~~~l~V~~ 235 (238)
+|.|+|.+.|..+.....-..|.|..
T Consensus 219 sG~Y~C~~~n~~~~~fg~gt~l~v~~ 244 (253)
T 3uzq_A 219 VATYFCQRSNEVPWTFGGGTKLEIKR 244 (253)
T ss_dssp CEEEEEEECSSSSCCBCCCEEEEECC
T ss_pred CEEEEEEEccCCCcEECCCEEEEEcC
Confidence 99999999997654445555666654
No 94
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=99.89 E-value=7.6e-21 Score=141.20 Aligned_cols=204 Identities=17% Similarity=0.244 Sum_probs=128.1
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeeee-
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAIH- 80 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~~- 80 (238)
..+|.+...+..+.+.+|++++|.|.+.... .+.+.+.|+|.... . .....
T Consensus 4 ~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~------------------------~~~~~v~W~r~~~~~~~~~~~~~~~ 59 (256)
T 3juy_B 4 HHHQVQLVQSGAEVKKPGASVKVSCQASGYR------------------------FSHFTVHWVRQAPGQRFEWMGWINP 59 (256)
T ss_dssp ---CCEEEECCCEEECTTCCEEEEEEEESSC------------------------GGGSCEEEEEECTTSCCEEEEEEET
T ss_pred ccceEEEEecCCceecCCCeEEEEEEeeccc------------------------ccCceEEEEEECCCCCcEEEEEEEc
Confidence 3467788889999999999999999997421 12456999985311 1 11111
Q ss_pred -----eeEeecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecC------------CC-cceeeEEEEEcCCc---
Q psy7941 81 -----EHVITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTN------------PM-TKQMAFLEVVIPPD--- 138 (238)
Q Consensus 81 -----~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~------------~~-~~~~~~l~v~~~~~--- 138 (238)
.......+|+.+.... ...++|.|.+++.+|+|.|+|.+.+. .. ....+.|.|...+.
T Consensus 60 ~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~ 139 (256)
T 3juy_B 60 YNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSG 139 (256)
T ss_dssp TTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----
T ss_pred CCCcEeecccCcceEEEEEecCCCEEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCccccc
Confidence 0011124578776533 45678999999999999999999764 11 22344567765322
Q ss_pred ----------ccccccCCceeecCCCcEEEEEEEccccC-CeEEEEeCC--Ce-eeEeecC----CCCCcceEEE---ee
Q psy7941 139 ----------ISSEETSGDMMVPEGGSAKLVCKAKGYPT-PKITWRRED--NK-EIIVRSN----PPSSQKVFSV---ES 197 (238)
Q Consensus 139 ----------~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~~~W~~~~--~~-~~~~~~~----~~~~~~~~~~---~~ 197 (238)
..+...+....+.+|+.+.|.|.+.+.|. +.+.|++.. .. ....... .......... ..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 219 (256)
T 3juy_B 140 GGGSGGGGSEIVLTQAPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTD 219 (256)
T ss_dssp ------CCCCCCEEEECSEEEECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTE
T ss_pred ccccCCCcceeEEEecCCeEEEeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCE
Confidence 12223355677899999999999988776 899999832 11 1111100 0001111111 12
Q ss_pred ceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941 198 EVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233 (238)
Q Consensus 198 ~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V 233 (238)
..|.|.++..+|+|.|+|.+.|..+........|.|
T Consensus 220 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~g~gt~l~V 255 (256)
T 3juy_B 220 FTLTITRVEPEDFALYYCQVYGASSYTFGQGTKLER 255 (256)
T ss_dssp EEEEESSCCGGGCSEEEEEECCSSCCEECCCEEEEE
T ss_pred EEEEECCCCHhHCEEEEEEEeeCCCceEcCCEEEEE
Confidence 369999999999999999999865533344555555
No 95
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=99.89 E-value=9.4e-22 Score=151.33 Aligned_cols=184 Identities=17% Similarity=0.227 Sum_probs=121.6
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCC-CceEEEEeCCceeeeeeeeeEeec
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSS-AMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
+|.+........+.+|+++.|.|.+. +.| .+.+.|+|++..+.. .
T Consensus 128 ~p~~~~~~~~~~~~~G~~v~L~C~~~--------------------------g~p~~~~i~W~k~~~~l~~--------~ 173 (329)
T 3oq3_B 128 PPSCIPETYELGTHDKYGIDLYCGIL--------------------------YAKHYNNITWYKNNQELII--------D 173 (329)
T ss_dssp CCSCEEEEEETTSSTTTCEEEECCCC--------------------------SCCCCCEEEEEETTEECCC--------S
T ss_pred CCcEeccccceEEeCCCcEEEEeccC--------------------------CCCCCceEEEEECCccCCC--------C
Confidence 34444444444566788889999774 345 678999998766421 2
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC--C-Cccee----eEEEEEcCCcc--cccccCCceeecCCCcEE
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN--P-MTKQM----AFLEVVIPPDI--SSEETSGDMMVPEGGSAK 157 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~-~~~~~----~~l~v~~~~~~--~~~~~~~~~~~~~g~~~~ 157 (238)
+.++.... .+|.|.+++.+|+|.|+|.+.+. . ..... +.|.|..++.. ... .+....+..|+.+.
T Consensus 174 ~~~~~~~~-----~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~-~~~~~~v~~G~~~~ 247 (329)
T 3oq3_B 174 GTKYSQSG-----QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI-LDPKINVTIGEPAN 247 (329)
T ss_dssp SSSEEEET-----TEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE-CCSEEEECTTSCEE
T ss_pred CceEecCC-----CEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee-cCCeeEEecCCCEE
Confidence 33443332 29999999999999999999864 1 22222 55777665532 111 34457789999999
Q ss_pred EEEEEcccc---CC-eEEEEeCCCeeeEeecCCCCCc--ceEEEeeceEEEEEeecCCCe-EEEEEeeeCCCCCccceEE
Q psy7941 158 LVCKAKGYP---TP-KITWRREDNKEIIVRSNPPSSQ--KVFSVESEVLSLTKVTRSEMG-AYQCIAANGVPPTVSKRLM 230 (238)
Q Consensus 158 l~C~~~~~p---~~-~~~W~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g~~~~~~~~ 230 (238)
|.|.+.+.| .+ .+.|++++...... ....... .........|.|.++..+|.| .|+|.|.|..|.. +.++.
T Consensus 248 l~C~~~g~p~~~~~i~v~W~~~g~~i~~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~-~~~~~ 325 (329)
T 3oq3_B 248 ITCTAVSTSLLVDDVLIDWENPSGWIIGL-DFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDK-TLTTT 325 (329)
T ss_dssp EEEEEEETTCCTTCCEEEEECTTSCBCCB-CSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEE-EEEEE
T ss_pred EEEEEEECCCCCCCcEEEEEECCeeeecc-CCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCce-EEEEE
Confidence 999999987 77 89999954332211 1000000 000013457999999999999 9999999999944 66666
Q ss_pred EEE
Q psy7941 231 LHV 233 (238)
Q Consensus 231 l~V 233 (238)
|.|
T Consensus 326 l~v 328 (329)
T 3oq3_B 326 VVL 328 (329)
T ss_dssp EEE
T ss_pred EEe
Confidence 665
No 96
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=99.89 E-value=1.5e-21 Score=143.17 Aligned_cols=185 Identities=20% Similarity=0.264 Sum_probs=117.9
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eeee-eee
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLAI-HEH 82 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~-~~~ 82 (238)
.+.+...+..+.+.+|+++.|.|.+... +.+.+.|+|..... .... ...
T Consensus 24 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~--------------------------~~~~v~W~k~~~~~~~~~~~~~~~~~ 77 (237)
T 3sob_L 24 DIQMTQSPSSLSASVGDRVTITCRASQD--------------------------VSTAVAWYQQKPGKAPKLLIYSASFL 77 (237)
T ss_dssp CCCEEEECSEEEEETTCCEEEEEEESSC--------------------------CTTCEEEEEECTTSCCEEEEETTTEE
T ss_pred cceEEeCCCeEEEeCCCcEEEEEecCCC--------------------------CCceEEEEEECCCCCCEEEEEecccc
Confidence 4566677888999999999999998642 35679999953211 1100 011
Q ss_pred EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEc---CCcccccccCCceeecCCCcEE
Q psy7941 83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVI---PPDISSEETSGDMMVPEGGSAK 157 (238)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~---~~~~~~~~~~~~~~~~~g~~~~ 157 (238)
......|+.... ....++|.|.+++.+|+|.|+|.+.+... ....+.+.|.. +|.+... ........|+.+.
T Consensus 78 ~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~--~~~~~~~~g~~v~ 154 (237)
T 3sob_L 78 YSGVPSRFSGSG-SGTDFTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIF--PPSDEQLKSGTAS 154 (237)
T ss_dssp CTTCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEE--CCCHHHHHHTEEE
T ss_pred CCCCCCcEEEEc-CCCEEEEEECCCChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEe--CCChhhccCCceE
Confidence 112245776663 34567999999999999999999976442 23344566654 2322221 1112233578899
Q ss_pred EEEEEcc-cc-CCeEEEEeCCCeeeEee----cCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 158 LVCKAKG-YP-TPKITWRREDNKEIIVR----SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 158 l~C~~~~-~p-~~~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
|.|.+.+ .| .+.+.|++ ++..+... ................|.+.....+|.|.|+|.|.|...
T Consensus 155 l~C~~~~~~p~~~~v~W~k-~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~ 224 (237)
T 3sob_L 155 VVCLLNNFYPREAKVQWKV-DNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGL 224 (237)
T ss_dssp EEEEEEEEBSSCCEEEEEE-TTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTC
T ss_pred EEEEEcccCCCceEEEEEE-CCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCC
Confidence 9999988 55 57999999 55444311 111111111112234688888999999999999999875
No 97
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=99.89 E-value=4.2e-21 Score=146.62 Aligned_cols=157 Identities=15% Similarity=0.317 Sum_probs=107.6
Q ss_pred CCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEc-----
Q psy7941 61 SSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVI----- 135 (238)
Q Consensus 61 ~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~----- 135 (238)
.|.+.+.|++++..+.. ..++.... ......|.|.+++.+|+|.|+|.+.+... .....+.+.+
T Consensus 135 ~p~~~i~W~~~~~~~~~---------~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~v~~~~~ 203 (317)
T 2y25_A 135 VEDLKVNWSHNGSAIRY---------SDRVKTGV-TGEQIWLQINEPTPNDKGKYVMELFDGKT-GHQKTVDLSGQAYDE 203 (317)
T ss_dssp CSSCEEEEEESSSBCCC---------CSSEEEEE-CSSEEEEEEESCCGGGCEEEEEEEECSSC-EEEEEEEECHHHHHH
T ss_pred CCCcEEEEEECCEECCC---------CCCeEEec-cCCEEEEEECcCCcccCeeEEEEEEeCCc-eEEEEEEEeeeeccc
Confidence 47889999998765432 23343332 22344799999999999999999987533 2223333321
Q ss_pred -----------------CCcccccccCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--
Q psy7941 136 -----------------PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE-- 196 (238)
Q Consensus 136 -----------------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-- 196 (238)
.|.+. ...+....+..|+.+.|.|.+.|.|.|.+.|++ ++..+.... .......
T Consensus 204 ~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~-~g~~~~~~~-----~~~~~~~~~ 276 (317)
T 2y25_A 204 AYAEFQRLKQAAIAEKNRARVL-GGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK-NEKALASDD-----HCNLKFEAG 276 (317)
T ss_dssp HHHHHHHHHHHHHHTTTSCEEE-EBCCSEEEEETTSBBCEEEEEECSSCCEEEEEE-SSSEECCCS-----SEEECCBTT
T ss_pred cchhhcccCCcccCcCCCCccc-ccCCccEEEEcCCEEEEEEEEecCCCCEEEEEE-CCEeCCCCC-----cEEEEEcCC
Confidence 11111 112334678899999999999999999999999 444443211 1111111
Q ss_pred -eceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEee
Q psy7941 197 -SEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCT 236 (238)
Q Consensus 197 -~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~ 236 (238)
...|.|.++..+|.|.|+|.|.|..|.. +.++.|.|..|
T Consensus 277 ~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~P 316 (317)
T 2y25_A 277 RTAYFTINGVSTADSGKYGLVVKNKYGSE-TSDFTVSVFIP 316 (317)
T ss_dssp TEEEEEEBSCCSTTCEEEEEEEEETTEEE-EEEEEEEEECC
T ss_pred CEEEEEECCCCHHHCEEEEEEEEeCCCeE-EEEEEEEEEcC
Confidence 1379999999999999999999999944 88888888755
No 98
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=99.89 E-value=9.6e-22 Score=148.55 Aligned_cols=171 Identities=15% Similarity=0.190 Sum_probs=127.3
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
..+|.|...+..+.+.+|+++.|.|.+.. .+.|++++..+... .
T Consensus 10 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~~------------------------------~i~W~~~~~~~~~~------~ 53 (290)
T 2o26_X 10 PSPPSIHPAQSELIVEAGDTLSLTCIDPD------------------------------FVRWTFKTYFNEMV------E 53 (290)
T ss_dssp --CCEESSCSSEEEEETTSCEEEEEECTT------------------------------EEEEEEECSSSCEE------E
T ss_pred CCCCEEeCCCCeEEEcCCCcEEEEECCCC------------------------------cEEEecCCcceeee------c
Confidence 35688888889999999999999999852 39999987764100 0
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccc
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY 165 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~ 165 (238)
..+ .+|.|.+++.+|+|.|+|.+.+ + ....+.+.|..+|.+.. ......+.+|+.+.|.|.+.+
T Consensus 54 ~~~-----------~~L~i~~~~~~d~G~Y~C~~~n-g-~~~~~~l~V~~~~~~~~--~~~~~~~~~g~~v~l~C~~~~- 117 (290)
T 2o26_X 54 NKK-----------NEWIQEKAEATRTGTYTCSNSN-G-LTSSIYVFVRDPAKLFL--VGLPLFGKEDSDALVRCPLTD- 117 (290)
T ss_dssp ECS-----------SEEEETTCCGGGCEEEEEEESS-S-CEEEEEEEEECSSCCBC--CCCCEEEETTSCEEECCCBSC-
T ss_pred CCC-----------ceEEEeccCHHhCeEEEEEeeC-C-ccEEEEEEEeCCCcccc--cccceEEecCCeEEEeCcCCC-
Confidence 011 2999999999999999999987 3 36667788887776552 344567889999999999986
Q ss_pred cC-CeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCe-EEEEEeeeCCCCCccceEEEEEE
Q psy7941 166 PT-PKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG-AYQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 166 p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
|. +.+.|++.++..+.. ...........|.|.++..+|.| .|+|.|.|..+...+..+.|.|.
T Consensus 118 p~~~~v~W~~~~g~~l~~------~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~ 182 (290)
T 2o26_X 118 PQVSQYSLIECDGKSLPT------DLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVR 182 (290)
T ss_dssp CSCEEEEEEETTSCCCCT------TCEEEEETTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEE
T ss_pred CCCceEEEEeCCCcCCCC------CCceeeCCCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEE
Confidence 77 899996546554421 12222333457999999999999 99999999866544566778776
No 99
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=99.89 E-value=2.9e-21 Score=143.48 Aligned_cols=199 Identities=15% Similarity=0.270 Sum_probs=122.8
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce-eeeee---------eeeEe
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK-AVLAI---------HEHVI 84 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-~~~~~---------~~~~~ 84 (238)
+..+.+.+|++++|.|.+..... +.+.+.|++.... ..... .....
T Consensus 9 ~~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~ 64 (256)
T 3umt_A 9 SGLELVKPGASVKISCKTSGYTF------------------------TEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQ 64 (256)
T ss_dssp CCCEEECTTCCEEEEEEEESSCG------------------------GGSCEEEEEECTTSCEEEEEEECTTTCCEEECG
T ss_pred cCceEEcCCCCEEEEEEEecccc------------------------cccEEEEEEECCCCCcEEEEEEeccCCcccccc
Confidence 44567999999999999864211 1356999985321 11111 00111
Q ss_pred ecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCC---C--cceeeEEEEEcC--------------Cccccccc
Q psy7941 85 TNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNP---M--TKQMAFLEVVIP--------------PDISSEET 144 (238)
Q Consensus 85 ~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~--~~~~~~l~v~~~--------------~~~~~~~~ 144 (238)
...+|+.+.... ...++|.|.+++.+|+|.|+|.+.+.. . ....+.|.|... ....+...
T Consensus 65 ~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (256)
T 3umt_A 65 KFKGKAILTVDKSSSTAYLELRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQS 144 (256)
T ss_dssp GGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEE
T ss_pred cccceEEEEEecCCCEEEEEECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcC
Confidence 224677776543 356789999999999999999997651 1 223455666641 01112223
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCC-Ceee--EeecC----CCCCcceEEE---eeceEEEEEeecCCCeEEE
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRRED-NKEI--IVRSN----PPSSQKVFSV---ESEVLSLTKVTRSEMGAYQ 214 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~-~~~~--~~~~~----~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~ 214 (238)
+....+.+|+.+.|.|.+.+.|.+.+.|++.. +... ..... .....+.... ....|.|.++..+|+|.|+
T Consensus 145 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 224 (256)
T 3umt_A 145 PSSLSASLGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYY 224 (256)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEE
T ss_pred CCeEEEECCCCEEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEE
Confidence 44577899999999999999888899999842 1111 11100 0001111111 1235999999999999999
Q ss_pred EEeeeCCCCCccceEEEEEEeec
Q psy7941 215 CIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 215 C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
|.+.|..+........|.|..++
T Consensus 225 C~~~~~~~~~fg~gt~L~V~~~~ 247 (256)
T 3umt_A 225 CLQYASSPPTFGGGTKLEIKRAA 247 (256)
T ss_dssp EEECSSSSCEECCCEEEEEC---
T ss_pred EEEeeCCCcEECCCEEEEEECCC
Confidence 99998665444556677776543
No 100
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=99.89 E-value=6.9e-23 Score=151.49 Aligned_cols=200 Identities=17% Similarity=0.245 Sum_probs=114.6
Q ss_pred eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee------ee--E
Q psy7941 12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH------EH--V 83 (238)
Q Consensus 12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~------~~--~ 83 (238)
+.++..+.+..|+++.|.|.+...... ......+.|++++........ .. .
T Consensus 7 v~~p~~~~v~~G~~v~L~C~~~g~p~~---------------------~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~ 65 (248)
T 3pv7_A 7 MMAGGTQITPLNDNVTIFCNIFYSQPL---------------------NITSMGITWFWKSLTFDKEVKVFEFFGDHQEA 65 (248)
T ss_dssp CSTTSEEEEETTSCEEECCEEEESSCC---------------------CTTSCEEEEEEECSSCCCEEEEEEEESSCEEE
T ss_pred EeCCCCeEEeCCCCEEEeeEEecCCCc---------------------CCCceEEEEEEEcCCCCcceEEEEecCCcccc
Confidence 356778889999999999999642111 011235999997433211100 00 0
Q ss_pred eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEE
Q psy7941 84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKA 162 (238)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~ 162 (238)
+..+.++.......+.++|.|.+++.+|+|.|+|.+.+.. .....+.|.|..+|.+..... .....|..+.|.|.+
T Consensus 66 ~~~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~---~~~~~~~~~~L~C~~ 142 (248)
T 3pv7_A 66 FRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLD---QVGMKENEDKYMCES 142 (248)
T ss_dssp SSTTCBCCHHHHTTTBCCEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEECC-----------CEEEEEE
T ss_pred cCCceEEEeccCCCCcEEEEeCCCCHHHCeEEEEEEEeCCccceeEEEEEEecCCceEEecC---CccccCCCcEEEEEE
Confidence 1111121111122345579999999999999999997653 334456788888777654322 234457778899999
Q ss_pred cc-ccCC-eEEEEeCCCeee-----E-----eecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC-CccceE
Q psy7941 163 KG-YPTP-KITWRREDNKEI-----I-----VRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP-TVSKRL 229 (238)
Q Consensus 163 ~~-~p~~-~~~W~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~-~~~~~~ 229 (238)
.| +|.| .+.|++++.... . ....... ... ....+.|.+.....+|.|.|+|.|.|..+. ..+.++
T Consensus 143 ~g~~P~pi~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~-~~~-~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v 220 (248)
T 3pv7_A 143 SGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNM-DGT-FNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNF 220 (248)
T ss_dssp EEEBSSCCEEEEEEECSSSCSCEEECTTEEEEEEEECT-TSC-EEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEE
T ss_pred ccEECCCeEEEEEECCccCCCccccccceeecccEECC-CCC-EEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEE
Confidence 88 8998 999999553110 0 0000000 111 122346788888888999999999999874 456677
Q ss_pred EEEEEeec
Q psy7941 230 MLHVHCTY 237 (238)
Q Consensus 230 ~l~V~~~p 237 (238)
.|.|..|+
T Consensus 221 ~l~V~~p~ 228 (248)
T 3pv7_A 221 TLTAARHS 228 (248)
T ss_dssp CC------
T ss_pred EEEEcCCC
Confidence 77775543
No 101
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=99.88 E-value=9.3e-22 Score=142.52 Aligned_cols=184 Identities=17% Similarity=0.263 Sum_probs=115.6
Q ss_pred cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC---cee-eeeeee---
Q psy7941 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD---TKA-VLAIHE--- 81 (238)
Q Consensus 9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~---~~~-~~~~~~--- 81 (238)
|.+..++ .+.+.+|+++.|.|.+.... |.+.+.|+|.. ... ......
T Consensus 2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~-------------------------~~~~v~W~k~~~~~~~~~~~~~~~~~~ 55 (218)
T 3s96_B 2 LVLTQSS-SASFSLGASAKLTCTLNSQH-------------------------STYTIEWYQQQPLKPPKYVMELKKDGS 55 (218)
T ss_dssp CSEECCS-EEEEETTSCEEEEEEECGGG-------------------------TTCCEEEEEECTTSCCEEEEEECTTSC
T ss_pred CeEEeCC-cEEECCCCcEEEEEECCCCC-------------------------CCcEEEEEEECCCCCeEEEEEEcccCc
Confidence 5566777 88999999999999996431 35679999943 111 111100
Q ss_pred --eEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC------cceeeEEEEEc----CCcccccccCCcee
Q psy7941 82 --HVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM------TKQMAFLEVVI----PPDISSEETSGDMM 149 (238)
Q Consensus 82 --~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~------~~~~~~l~v~~----~~~~~~~~~~~~~~ 149 (238)
.......|+.+.. ....++|.|.+++.+|+|.|+|.+.+... ....+.|.|.. +|.+... .....
T Consensus 56 ~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~--~~~~~ 132 (218)
T 3s96_B 56 HSTGDGIPDRFSGSS-SGADRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVF--PPSSE 132 (218)
T ss_dssp EEECSSCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEE--CCCHH
T ss_pred cccCCCcccceEEec-CCceEEEEEccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEee--CCCcc
Confidence 0011235777665 45667999999999999999999976432 23345677773 3333221 11223
Q ss_pred ecCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCC--CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 150 VPEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPP--SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 150 ~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
...|+.+.|.|.+.+ .|.+ .+.|++ ++..+....... ..........+.|.+.....+|.|.|+|.|.|..+
T Consensus 133 ~~~~~~v~L~C~~~g~~p~~~~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~ 208 (218)
T 3s96_B 133 ELKENKATLVCLISNFSPSGVTVAWKA-NGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGD 208 (218)
T ss_dssp HHHTTEEEEEEEEEEEBSSCCEEEEEE-TTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTE
T ss_pred cccCCcEEEEEEECcccCCCeEEEEEE-CCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCC
Confidence 345688999999988 6777 899999 555543211100 00000111123477777788889999999999887
No 102
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=99.88 E-value=6.1e-23 Score=158.45 Aligned_cols=196 Identities=16% Similarity=0.190 Sum_probs=133.1
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
...|.|...+..+.+.+|+++.|.|.+...... ..+.|.+.+.|++++........
T Consensus 16 ~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~-------------------~~~~p~~~v~W~k~~~~~~~~~~----- 71 (339)
T 3o4o_C 16 RSCRFRGRHYKREFRLEGEPVALRCPQVPYWLW-------------------ASVSPRINLTWHKNDSARTVPGE----- 71 (339)
T ss_dssp --CEEEEECSCCEEEETTBCCEEECTTSCSSCC-------------------STTSSCCBCCCEESSCCSCCSCC-----
T ss_pred hhhHhhCcCceEEEEECCccEEEEecccccccc-------------------ccCCCCceEEEEECCCCcccCcc-----
Confidence 456889999999999999999999998521000 01345678999998765322110
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEE---
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCK--- 161 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~--- 161 (238)
...++..... +|.|.+++.+|+|.|+|.+.+.. .....+.|.|..++............+..|+.+.|.|.
T Consensus 72 ~~~~~~~~~~-----~L~i~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~ 146 (339)
T 3o4o_C 72 EETRMWAQDG-----ALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLS 146 (339)
T ss_dssp SSSCEEEETT-----EEEESSBCTTCCEEEECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCT
T ss_pred ccccEEeeCC-----eEEECCCCcccCEEEEEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCc
Confidence 1233332222 89999999999999999997753 33445667777666543222223346789999999999
Q ss_pred --EccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC---CccceEEEEEEe
Q psy7941 162 --AKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP---TVSKRLMLHVHC 235 (238)
Q Consensus 162 --~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~---~~~~~~~l~V~~ 235 (238)
+.+.|.+.+.|++ ++..+.... ...........|.|.++..+|.|.|+|.|.|..|. ..+..+.|.|..
T Consensus 147 ~~~~g~p~~~v~W~k-~g~~~~~~~----~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~ 220 (339)
T 3o4o_C 147 EFTRDKTDVKIQWYK-DSLLLDKDN----EKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKK 220 (339)
T ss_dssp TTCCSSSCCCBCCEE-SSCBCCTTC----SSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEEC
T ss_pred ccccCCCCceEEEec-CCeeCCCCC----ceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEc
Confidence 7888999999999 444432110 11111112247999999999999999999998873 235677777764
No 103
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.88 E-value=3.4e-21 Score=141.74 Aligned_cols=179 Identities=16% Similarity=0.160 Sum_probs=121.0
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
.+|.|...+.. .+.+|++++|+|.+... ...+.|+|++..+....
T Consensus 6 ~kP~i~~~P~~-~v~~G~~VtL~C~~~~~---------------------------~~~~~w~k~g~~~~~~~------- 50 (242)
T 1p6f_A 6 PKPFIWAEPHF-MVPKEKQVTICCQGNYG---------------------------AVEYQLHFEGSLFAVDR------- 50 (242)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCTT---------------------------CCEEEEEETTEEEEEEC-------
T ss_pred CCCEEEeeCCC-ccCCCCcEEEEEeeCCC---------------------------CcEEEEEECCCcccccc-------
Confidence 46777777766 88999999999997521 34589999876543110
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC---CcceeeEEEEEc---CCcccccccCCceeecCCCcEEEEE
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP---MTKQMAFLEVVI---PPDISSEETSGDMMVPEGGSAKLVC 160 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~l~v~~---~~~~~~~~~~~~~~~~~g~~~~l~C 160 (238)
... ........|.|.+++.+|+|.|+|.+.+.. ..+....|.|.. +|.+... + ...+.+|+.+.|.|
T Consensus 51 ~~~----~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V~~~~~~P~i~~~--p-~~~v~~G~~vtL~C 123 (242)
T 1p6f_A 51 PKP----PERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVH--P-GPEVISGEKVTFYC 123 (242)
T ss_dssp CSS----CTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEEEECCSCCCEEEEE--S-CSEEETTCEEEEEE
T ss_pred ccc----cCCcceeEEEecCCCcccCeEEEEEEecCCccccCCcceEEEeecccCCCceEcc--C-CCccCCCCcEEEEE
Confidence 000 011233489999999999999999997642 123455677764 3333321 2 24578999999999
Q ss_pred EEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC--CCCccceEEEEEEee
Q psy7941 161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV--PPTVSKRLMLHVHCT 236 (238)
Q Consensus 161 ~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~--g~~~~~~~~l~V~~~ 236 (238)
.+.+. .+.+.|++++ ..+.... ........|.|.++..+|+|.|+|.+.|.. ....+..+.|.|..+
T Consensus 124 ~~~~~-~~~~~w~k~g-~~~~~~~-------~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~ 192 (242)
T 1p6f_A 124 RLDTA-TSMFLLLKEG-RSSHVQR-------GYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGD 192 (242)
T ss_dssp ECTTS-CSEEEEEECS-SSCEEEE-------EECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC-
T ss_pred ecCCC-CCEEEEEECC-CccCccc-------cCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEecc
Confidence 98764 4699999954 3332110 112234579999999999999999999864 335578888888763
No 104
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.88 E-value=2.8e-21 Score=139.30 Aligned_cols=182 Identities=23% Similarity=0.315 Sum_probs=115.1
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--eeeeeee---eeEe
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KAVLAIH---EHVI 84 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~~~~~~---~~~~ 84 (238)
.+.. |..+.+.+|+++.|.|.+.. .|.+.+.|+++.. ....... ....
T Consensus 3 ~v~q-p~~~~v~~G~~v~L~C~~~~--------------------------~~~~~v~W~~~~~g~~~~~~~~~~~~~~~ 55 (210)
T 1lk3_L 3 VLTQ-PPALTVSPGEKLTISCKASE--------------------------SVTSRMHWYQQKPGQQPKLLIYKASNLAS 55 (210)
T ss_dssp CEEC-CSEEEECTTSCEEEEEEESS--------------------------CCTTCEEEEEECTTSCCEEEEETTTEECT
T ss_pred cEEC-CCcEEEcCCCCEEEEeeCCC--------------------------ccCCCEEEEEECCCCCeEEEEEccccccC
Confidence 3455 78889999999999999853 2345699999532 1110000 0001
Q ss_pred ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEc---CCcccccccCCceeecCCCcEEEE
Q psy7941 85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVI---PPDISSEETSGDMMVPEGGSAKLV 159 (238)
Q Consensus 85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~---~~~~~~~~~~~~~~~~~g~~~~l~ 159 (238)
....|+.+.. ....++|.|.+++.+|+|.|+|.+.+.... ...+.+.|.. +|.+.... ....+..|+.+.|.
T Consensus 56 ~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~--~~~~~~~g~~v~l~ 132 (210)
T 1lk3_L 56 GVPARFSGSG-SGTDFTLTIDPVEADDTAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFP--PSTEQLATGGASVV 132 (210)
T ss_dssp TCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEEC--CCHHHHTTTEEEEE
T ss_pred CccccEEEEe-cCCEEEEEECCCCHHHCeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEEC--CchhhccCCcEEEE
Confidence 1235776655 345669999999999999999999775432 2234566654 33333211 11223478899999
Q ss_pred EEEcc-ccCC-eEEEEeCCCeeeEee----cCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 160 CKAKG-YPTP-KITWRREDNKEIIVR----SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 160 C~~~~-~p~~-~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
|.+.| .|.+ .+.|++ ++..+... ..............+.|.|..+..+|.|.|+|.|.|...
T Consensus 133 C~~~g~~p~~~~v~W~k-~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~ 200 (210)
T 1lk3_L 133 CLMNNFYPRDISVKWKI-DGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTS 200 (210)
T ss_dssp EEEEEEBSSCCEEEEEE-TTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTC
T ss_pred EEEEeEeCCceEEEEEe-CCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCC
Confidence 99987 5554 899999 55443211 000000111112234799999999999999999999875
No 105
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=99.88 E-value=2e-21 Score=144.56 Aligned_cols=165 Identities=19% Similarity=0.208 Sum_probs=125.6
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCc-eEEEEeCCceeeeeeeeeEeec
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM-KVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
+|.|...+..+.+.+|+++.|.|.+.. .|.+ .+.|++++..+..
T Consensus 1 kP~i~~~p~~~~v~~G~~v~l~C~~~~--------------------------~~~~~~~~W~~~g~~~~~--------- 45 (262)
T 3rjd_A 1 KAVITLQPPWVSVFQEETVTLHCEVLH--------------------------LPGSSSTQWFLNGTATQT--------- 45 (262)
T ss_dssp CCEEEESSCCSEEETTCCEEEEEECSS--------------------------CCCTTCEEEEETTEECSC---------
T ss_pred CCeEecCCCcEEeeCCCeEEEEEECCC--------------------------CCCCceEEEEECCEEeec---------
Confidence 478888899999999999999999853 2334 7999997665321
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEE-ccc
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKA-KGY 165 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~ 165 (238)
. ...|.|.+++.+|+|.|+|.+.+.. .+..+.+.|..++.... +....+.+|+.+.|.|.+ .+.
T Consensus 46 ~-----------~~~l~i~~~~~~d~G~Y~C~~~~~~-~s~~~~l~v~~~~~~~~---~~~~~~~~g~~v~l~C~~~~~~ 110 (262)
T 3rjd_A 46 S-----------TPSYRITSASVNDSGEYRCQRGLSG-RSDPIQLEIHRGWLLLQ---VSSRVFTEGEPLALRCHAWKDK 110 (262)
T ss_dssp C-----------SSEEEESSCCGGGCEEEEEEESSSC-CCCCEEEEEECSSEEEE---ESCSEEETTSCEEEEEEEGGGC
T ss_pred c-----------CCeEEEecCCcccCeEEEEEEecCC-ccccEEEEEeccceEec---CCCeEEecCCeEEEEEEccCCC
Confidence 1 1189999999999999999997543 34466777776553322 233567789999999999 678
Q ss_pred cCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEe
Q psy7941 166 PTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHC 235 (238)
Q Consensus 166 p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~ 235 (238)
|.+.+.|++ ++..+.. ......|.|.++..+|.|.|+|.+.|..+ ..+..+.|.|..
T Consensus 111 p~~~v~W~~-~g~~~~~-----------~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~-~~~~~~~l~V~~ 167 (262)
T 3rjd_A 111 LVYNVLYYR-NGKAFKF-----------FHWNSNLTILKTNISHNGTYHCSGMGKHR-YTSAGISVTVKE 167 (262)
T ss_dssp CCEEEEEEE-TTEEEEE-----------EEECCCEEESSCCGGGCEEEEEEEESSSE-EEEECEEEEEEC
T ss_pred CCceEEEEE-CCccccc-----------cCCCCeEEEEECChhhCEEEEEEEeCCCC-ccccceEEEecc
Confidence 888999999 5554432 22345799999999999999999999887 447777888875
No 106
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=99.88 E-value=2e-21 Score=149.44 Aligned_cols=198 Identities=17% Similarity=0.248 Sum_probs=132.5
Q ss_pred EEecCCEEEEeEEecCCCceeeeeeeeee----------------eecC---CeEEecc----CCCCceEEEEeCCceee
Q psy7941 20 IAQGRDAIFTCVVNNLGGHRVSSSVTDTH----------------VNTG---GSIVFPT----DSSAMKVAWIKADTKAV 76 (238)
Q Consensus 20 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~----------------~~~~---~~~~~~~----~~~~~~~~W~~~~~~~~ 76 (238)
+...|.+.|.|.+.+.........+.+.+ +..| +.+.+.| +.|.+.+.|+++.....
T Consensus 99 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~ 178 (331)
T 3u83_A 99 LELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEA 178 (331)
T ss_dssp CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEE
T ss_pred cCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCcc
Confidence 56789999999854332222222222221 3344 4455555 46889999999633222
Q ss_pred eeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCcccccccCCceeecCCCc
Q psy7941 77 LAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDISSEETSGDMMVPEGGS 155 (238)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~ 155 (238)
. .......++.+.+.. .|.|.++..+|+|.|+|.+.+.. .....+.|.|..+|.+... ......+.+|+.
T Consensus 179 ~--~~~~~~~~~~~~~~~------~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~-~~~~~~~~~g~~ 249 (331)
T 3u83_A 179 E--YQEIRNPNGTVTVIS------RYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIE-GFDGNWYLQRMD 249 (331)
T ss_dssp E--EEEEECTTSCEEEEE------EEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEEE-CCCSCCBTTCCC
T ss_pred c--cceeECCCCcEEEEE------EEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeEEEe-cCCCceEeCCCe
Confidence 1 111222344444443 79999999999999999998763 3345566777777765432 233345788999
Q ss_pred EEEEEEEccccCCe-EEEEeCCCeeeEeecCCCCCcceEEEeeceEEEE-EeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941 156 AKLVCKAKGYPTPK-ITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT-KVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233 (238)
Q Consensus 156 ~~l~C~~~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~-~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V 233 (238)
+.|.|.+.+.|.|. +.|++++ ..+.. . ....++.|.|. ++..+|.|.|+|.|.|..|.. +.++.|.|
T Consensus 250 ~~l~C~~~g~p~p~~i~W~~~~-~~~~~--------~-~~~~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V 318 (331)
T 3u83_A 250 VKLTCKADANPPATEYHWTTLN-GSLPK--------G-VEAQNRTLFFKGPINYSLAGTYICEATNPIGTR-SGQVEVNI 318 (331)
T ss_dssp EEEEEEEEEESCCCEEEEEETT-BSCCT--------T-EEEETTEEEECSCCCGGGCEEEEEEEEETTEEE-EEEEEECC
T ss_pred EEEEEeCcCCCCCCEEEEEECC-Ccccc--------c-ceecCcEEEEeCCCccccCeEEEEEEEeccccc-eEEEEEEE
Confidence 99999999999997 9999944 33321 1 22345689999 899999999999999999954 88888888
Q ss_pred Eeec
Q psy7941 234 HCTY 237 (238)
Q Consensus 234 ~~~p 237 (238)
...+
T Consensus 319 ~~~~ 322 (331)
T 3u83_A 319 TEAA 322 (331)
T ss_dssp BC--
T ss_pred eccc
Confidence 7643
No 107
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=99.88 E-value=5.7e-22 Score=153.63 Aligned_cols=199 Identities=17% Similarity=0.161 Sum_probs=104.3
Q ss_pred EEecCCEEEEeEEecCCCceeeeeeeee------------------eeecCCeEEeccC--------CCCceEEEEeCCc
Q psy7941 20 IAQGRDAIFTCVVNNLGGHRVSSSVTDT------------------HVNTGGSIVFPTD--------SSAMKVAWIKADT 73 (238)
Q Consensus 20 v~~g~~~~l~C~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~--------~~~~~~~W~~~~~ 73 (238)
+...|.+.|.|.+.|..+.... .+.+. .+..|+.+.+.|. .|.+.+.|+|++.
T Consensus 86 ~~~~D~G~Y~C~a~n~~~~~~~-~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~ 164 (349)
T 4dep_C 86 TLLNDTGNYTCMLRNTTYCSKV-AFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCY 164 (349)
T ss_dssp CCGGGCEEEEEEEECSSCEEEE-EEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTE
T ss_pred CChhhCEEEEEEEecCCceEEE-EEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCE
Confidence 5678999999999986554321 11111 2345777877775 6899999999876
Q ss_pred eeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-Cc----ceeeEEEEEc------CCccccc
Q psy7941 74 KAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MT----KQMAFLEVVI------PPDISSE 142 (238)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~----~~~~~l~v~~------~~~~~~~ 142 (238)
.+. .+.++..... .|.|.+++.+|+|.|+|.+.+.. .. .....+.|.. +|.+...
T Consensus 165 ~l~---------~~~~~~~~~~-----~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~ 230 (349)
T 4dep_C 165 KIQ---------NFNNVIPEGM-----NLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSP 230 (349)
T ss_dssp ECC---------SCSSEEEETT-----EEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC--
T ss_pred ECC---------CccceeecCC-----EEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecC
Confidence 532 1122222221 89999999999999999998742 22 3344455554 3433322
Q ss_pred ccCCceeecCCCcEEEEEEEc----cccCCeEEEEeCCCeeeEe-ecCCCCCcc------eEEEeeceEEEEEeecCCC-
Q psy7941 143 ETSGDMMVPEGGSAKLVCKAK----GYPTPKITWRREDNKEIIV-RSNPPSSQK------VFSVESEVLSLTKVTRSEM- 210 (238)
Q Consensus 143 ~~~~~~~~~~g~~~~l~C~~~----~~p~~~~~W~~~~~~~~~~-~~~~~~~~~------~~~~~~~~l~i~~~~~~d~- 210 (238)
.......+..|+.+.|.|.+. +.|.|.+.|++ ++..+.. ......... ........|.|.++..+|.
T Consensus 231 ~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~ 309 (349)
T 4dep_C 231 NDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTI-DGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLK 309 (349)
T ss_dssp --------------CCCEEEEECCCTTCCCEEEEES-SCC--------CCCCEEEECCTTCCEEEEECC-----------
T ss_pred CCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEE-CCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcC
Confidence 111112678899999999998 57889999999 4444332 111000000 0112234699999999999
Q ss_pred eEEEEEeeeCCCCCccceEEEEEEe
Q psy7941 211 GAYQCIAANGVPPTVSKRLMLHVHC 235 (238)
Q Consensus 211 G~y~C~~~n~~g~~~~~~~~l~V~~ 235 (238)
|.|+|.|.|..|.. +..+.|.|..
T Consensus 310 G~Y~C~a~N~~G~~-~~~~~l~v~~ 333 (349)
T 4dep_C 310 RSYVCHARSAKGEV-AKAAKVKQKV 333 (349)
T ss_dssp --CEEEEECSSCEE-EEECC-----
T ss_pred CcEEEEEEcCCCcE-EEEEEEeeec
Confidence 99999999999944 6777777766
No 108
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=99.88 E-value=6e-21 Score=141.19 Aligned_cols=185 Identities=17% Similarity=0.289 Sum_probs=117.1
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eeee-eee
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLAI-HEH 82 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~-~~~ 82 (238)
.+.+...+..+.+.+|+++.|.|.+.. .|.+.+.|+|+.... .... ...
T Consensus 4 ~~~v~~~p~~~~v~~G~~v~L~C~~~~--------------------------~~~~~i~W~k~~~~~~~~~l~~~~~~~ 57 (250)
T 3esu_F 4 DIVLIQSTSSLSASLGDRVTISCRASQ--------------------------DIRNYLNWYQQKPDGTVKLLIYYTSRL 57 (250)
T ss_dssp CCCEECSCSEEEECTTCCEEEEEEESS--------------------------CCTTCEEEEEECTTSCEEEEEETTTEE
T ss_pred ceeEEecCCEEEeeCCCcEEEEEEecc--------------------------cCCceEEEEEECCCCCCEEEEEEeCCC
Confidence 456778888999999999999999953 335579999964211 1100 011
Q ss_pred EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEcCC-----------------cccccc
Q psy7941 83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIPP-----------------DISSEE 143 (238)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~-----------------~~~~~~ 143 (238)
......|+.... ....++|.|.+++.+|+|.|+|.+.+... ....+.|.|..++ ......
T Consensus 58 ~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (250)
T 3esu_F 58 QSGVPSRFSGSG-SGTDYSLTISNLEQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQ 136 (250)
T ss_dssp CTTCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CE
T ss_pred CCCCCCCEEEeC-CCCEEEEEEccCChhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEe
Confidence 111245675544 34567999999999999999999976432 2233456665431 111112
Q ss_pred cCCceeecCCCcEEEEEEEcccc--CCeEEEEeCC-CeeeEee---c--------CCCCCcceEEEe-----eceEEEEE
Q psy7941 144 TSGDMMVPEGGSAKLVCKAKGYP--TPKITWRRED-NKEIIVR---S--------NPPSSQKVFSVE-----SEVLSLTK 204 (238)
Q Consensus 144 ~~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~~-~~~~~~~---~--------~~~~~~~~~~~~-----~~~l~i~~ 204 (238)
.+....+.+|+.+.|.|.+.+.| .+.+.|+++. +...... . ......+..... ...|.|.+
T Consensus 137 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 216 (250)
T 3esu_F 137 QSGPELVKPGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSS 216 (250)
T ss_dssp ECCCEEECTTCCEEEEEECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred cCCceEEcCCceEEEEEEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECC
Confidence 23456788999999999998865 7799999852 2211100 0 000011122211 12699999
Q ss_pred eecCCCeEEEEEeee
Q psy7941 205 VTRSEMGAYQCIAAN 219 (238)
Q Consensus 205 ~~~~d~G~y~C~~~n 219 (238)
+..+|+|.|+|.+.+
T Consensus 217 v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 217 LTSVDSAVYFCARSG 231 (250)
T ss_dssp CCGGGCEEEEEEEEC
T ss_pred CCcccCEEEEEEEec
Confidence 999999999999997
No 109
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=99.88 E-value=9.6e-22 Score=152.33 Aligned_cols=194 Identities=19% Similarity=0.220 Sum_probs=126.2
Q ss_pred ccCceeEEEecCCEEEEeEEecCCCce-eeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEE
Q psy7941 13 YPLENVTIAQGRDAIFTCVVNNLGGHR-VSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLS 91 (238)
Q Consensus 13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 91 (238)
.....+.+.+|+++.|.|.+....... ++ +...+.+.+.|++++........-.......++.
T Consensus 12 ~~~~~v~v~~G~~v~L~C~~~~~p~~~~ys----------------~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~ 75 (349)
T 4dep_C 12 DTMRQIQVFEDEPARIKCPLFEHFLKFNYS----------------TAHSAGLTLIWYWTRQDRDLEEPINFRLPENRIS 75 (349)
T ss_dssp CCCCCCEEETTSCEEEECTCCCCCSSSCHH----------------HHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEE
T ss_pred ceeeeEEEecCCeEEEEccccccccccccc----------------cccCCCceEEEEECCCCCcccccccccccCceEe
Confidence 346678899999999999986321100 00 0012357899999764221110000001123333
Q ss_pred EEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCccccccc--CCceeecCCCcEEEEEEE-----c
Q psy7941 92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEET--SGDMMVPEGGSAKLVCKA-----K 163 (238)
Q Consensus 92 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~--~~~~~~~~g~~~~l~C~~-----~ 163 (238)
.... +|.|.+++.+|+|.|+|.+.+... ....+.|.|..++....... +....+..|+.+.|.|.+ .
T Consensus 76 ~~~~-----~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~ 150 (349)
T 4dep_C 76 KEKD-----VLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFP 150 (349)
T ss_dssp EETT-----EEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSC
T ss_pred ecCC-----EEEEccCChhhCEEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCccccc
Confidence 3222 899999999999999999987533 34456677776554332211 234567889999999985 6
Q ss_pred cccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC-CCC--ccceEEEEEEe
Q psy7941 164 GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV-PPT--VSKRLMLHVHC 235 (238)
Q Consensus 164 ~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~-g~~--~~~~~~l~V~~ 235 (238)
|.|.+.+.|++ ++..+.. .......+..|.|.++..+|+|.|+|.|.|.. |.. .++.+.|.|..
T Consensus 151 g~p~~~v~W~k-~~~~l~~-------~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~ 217 (349)
T 4dep_C 151 SSVKPTITWYM-GCYKIQN-------FNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVG 217 (349)
T ss_dssp TTSCCEEEEEE-TTEECCS-------CSSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred CCCCceEEEee-CCEECCC-------ccceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEc
Confidence 78999999999 5554421 11223344679999999999999999999987 532 36777777765
No 110
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.88 E-value=5.8e-21 Score=140.22 Aligned_cols=185 Identities=13% Similarity=0.158 Sum_probs=118.4
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--ceeee--eeee----
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKAVL--AIHE---- 81 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~~~--~~~~---- 81 (238)
.+...+..+.+.+|+++.|.|. .+. |.+.+.|+|+. ..... ....
T Consensus 2 ~v~q~p~~~~v~~G~~v~L~C~-~~~--------------------------~~~~i~W~k~~~~~~~~~~~~~~~~~~~ 54 (238)
T 2p1y_A 2 AVTQSPRNKVAVTGGKVTLSCN-QTN--------------------------NHNNMYWYRQDTGHGLRLIHYSYGAGST 54 (238)
T ss_dssp CEEEECSEEEEETTCCEEEEEE-ECS--------------------------CCSEEEEEEEETTTEEEEEEEESSTTCC
T ss_pred cceECccceEEeCCCEEEEEee-cCC--------------------------CCccEEEEEECCCCCcEEEEEEecCcce
Confidence 4566788899999999999999 321 24679999952 11110 0000
Q ss_pred eEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC------cceeeEEEEEcCCc----------ccccccC
Q psy7941 82 HVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM------TKQMAFLEVVIPPD----------ISSEETS 145 (238)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~------~~~~~~l~v~~~~~----------~~~~~~~ 145 (238)
.......|+.+.......++|.|.+++.+|+|.|+|.+.+... ....+.|.|...+. ..+...+
T Consensus 55 ~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p 134 (238)
T 2p1y_A 55 EKGDIPDGYKASRPSQENFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSP 134 (238)
T ss_dssp EECSSCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEEC
T ss_pred eCCCccceEEEEccCCceEEEEEecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccC
Confidence 0011145777665444567999999999999999999976521 11234677765442 0122234
Q ss_pred CceeecCCCcEEEEEEEccccCCeEEEEeCCC-e---eeEeecCC---CCCcceEEE-----eeceEEEEEeecCCCeEE
Q psy7941 146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDN-K---EIIVRSNP---PSSQKVFSV-----ESEVLSLTKVTRSEMGAY 213 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~-~---~~~~~~~~---~~~~~~~~~-----~~~~l~i~~~~~~d~G~y 213 (238)
....+.+|+.+.|.|.+.+.|.+.+.|++++. . .+...... ......... ....|.|.++..+|+|.|
T Consensus 135 ~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y 214 (238)
T 2p1y_A 135 QSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATY 214 (238)
T ss_dssp SEEEEETTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEE
T ss_pred ceEEEeCCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEE
Confidence 45678899999999999999999999998532 1 11110000 000111111 124799999999999999
Q ss_pred EEEeeeCC
Q psy7941 214 QCIAANGV 221 (238)
Q Consensus 214 ~C~~~n~~ 221 (238)
+|.|.|..
T Consensus 215 ~C~a~n~~ 222 (238)
T 2p1y_A 215 FCAAIDTN 222 (238)
T ss_dssp EEEEEETT
T ss_pred EEEEeeCC
Confidence 99999974
No 111
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.88 E-value=1.1e-20 Score=142.36 Aligned_cols=199 Identities=16% Similarity=0.221 Sum_probs=123.7
Q ss_pred eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--ee--eeee------e
Q psy7941 12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--AV--LAIH------E 81 (238)
Q Consensus 12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~~--~~~~------~ 81 (238)
...|..+.+.+|+++.|.|.+..... +.+.+.|+|++.. .. .... .
T Consensus 30 ~~~p~~~~v~~G~~v~L~C~~~g~~~------------------------~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~ 85 (282)
T 1qok_A 30 LQQSGAELVRSGTSVKLSCTASGFNI------------------------KDSYMHWLRQGPEQGLEWIGWIDPENGDTE 85 (282)
T ss_dssp EEECCCEEEETTCCEEEEEEEESSCG------------------------GGSCEEEEEECTTCCEEEEEEEETTTTEEE
T ss_pred EECCCCEEEeCCCeEEEEEeccCCCC------------------------CCceEEEEEeCCCCCcEEEEEEecCCCccc
Confidence 45677889999999999999864210 1356999996421 11 1100 0
Q ss_pred eEeecCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCCC------cceeeEEEEEcCCc-------------ccc
Q psy7941 82 HVITNNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPM------TKQMAFLEVVIPPD-------------ISS 141 (238)
Q Consensus 82 ~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~------~~~~~~l~v~~~~~-------------~~~ 141 (238)
.......|+.+... ....++|.|.+++.+|+|.|+|.+.+... ....+.|.|..++. +.+
T Consensus 86 ~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~ 165 (282)
T 1qok_A 86 YAPKFQGKATFTTDTSSNTAYLQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVL 165 (282)
T ss_dssp ECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCE
T ss_pred cCchhcCcEEEEEecCCCeEEEEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEE
Confidence 00112467777654 33567999999999999999999977532 11234677776431 112
Q ss_pred cccCCceeecCCCcEEEEEEEccccCCeEEEEeC--CCeee-EeecC----CCCCcceE-E--EeeceEEEEEeecCCCe
Q psy7941 142 EETSGDMMVPEGGSAKLVCKAKGYPTPKITWRRE--DNKEI-IVRSN----PPSSQKVF-S--VESEVLSLTKVTRSEMG 211 (238)
Q Consensus 142 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--~~~~~-~~~~~----~~~~~~~~-~--~~~~~l~i~~~~~~d~G 211 (238)
...+....+.+|+.+.|.|.+.+.| +.+.|++. +.... ..... ........ . .....|.|.++..+|+|
T Consensus 166 ~~~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG 244 (282)
T 1qok_A 166 TQSPAIMSASPGEKVTITCSASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAA 244 (282)
T ss_dssp EEECSEEEECTTCCEEEEEEESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred ecCCCEEEEcCCCcEEEEEEecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCE
Confidence 2234456788999999999999988 89999983 22221 11000 00011111 1 12347999999999999
Q ss_pred EEEEEeeeCCCCCccceEEEEEEe
Q psy7941 212 AYQCIAANGVPPTVSKRLMLHVHC 235 (238)
Q Consensus 212 ~y~C~~~n~~g~~~~~~~~l~V~~ 235 (238)
.|+|.+.|..+........|.|..
T Consensus 245 ~Y~C~a~~~~~~~fg~gt~l~V~~ 268 (282)
T 1qok_A 245 TYYCQQRSSYPLTFGAGTKLELKR 268 (282)
T ss_dssp EEEEEECSSSSCEECCCEEEEEC-
T ss_pred EEEEEEeeCCCceEeCCEEEEEec
Confidence 999999985432334445566653
No 112
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=99.88 E-value=8.2e-21 Score=156.70 Aligned_cols=199 Identities=17% Similarity=0.231 Sum_probs=133.5
Q ss_pred eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceee----eee-eeeEeec
Q psy7941 12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAV----LAI-HEHVITN 86 (238)
Q Consensus 12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~----~~~-~~~~~~~ 86 (238)
+..|..+.+.+|+++.|.|.+...... ..+.+.|+|++.... ... .......
T Consensus 4 i~~P~~v~v~~G~~v~L~C~~~~~~~~-----------------------~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~ 60 (585)
T 2ocw_A 4 IFGPEEVNSVEGNSVSITCYYPPTSVN-----------------------RHTRKYWCRQGARGGCITLISSEGYVSSKY 60 (585)
T ss_pred ccCcceeEEecCCcEEEEEeCCCCcCC-----------------------CcccEEEEeCCCCCCceEEEECCCccccee
Confidence 345778899999999999998642111 123699999875321 110 0001112
Q ss_pred CccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941 87 NARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG 164 (238)
Q Consensus 87 ~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~ 164 (238)
.+|+.+... ..+.++|.|.+++.+|+|.|+|.+.+. +.....+.|.|..+|.+.. .+....+.+|+.+.|.|.+.+
T Consensus 61 ~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~p~~~~--~~~~~~v~~G~~v~l~C~~~~ 138 (585)
T 2ocw_A 61 AGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLN--DTKVYTVDLGRTVTINCPFKT 138 (585)
T ss_pred eceEEEEecCCCCEEEEEECCCCcccCEEEEEEcccCCCCceEEEEEEEecCccccC--CCccEEEEcCCCEEEEEEecC
Confidence 346666543 345678999999999999999999764 3345567788887776643 345577899999999999986
Q ss_pred c-cCCeEEEEeCCCeeeEe-ecC-----CCCCcceEEEe-e-----ceEEEEEeecCCCeEEEEEeeeCCCCCccceEEE
Q psy7941 165 Y-PTPKITWRREDNKEIIV-RSN-----PPSSQKVFSVE-S-----EVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLML 231 (238)
Q Consensus 165 ~-p~~~~~W~~~~~~~~~~-~~~-----~~~~~~~~~~~-~-----~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l 231 (238)
. |.+.+.|+++++..... ... ........... + ..|.|.++..+|.|.|+|.|.|..|. .+..+.|
T Consensus 139 ~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l 217 (585)
T 2ocw_A 139 ENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNS-NKKNADL 217 (585)
T ss_pred CCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCcc-ccceEEE
Confidence 4 56789999965432111 000 00011111111 2 16999999999999999999999984 4788888
Q ss_pred EEEee
Q psy7941 232 HVHCT 236 (238)
Q Consensus 232 ~V~~~ 236 (238)
.|..+
T Consensus 218 ~V~~~ 222 (585)
T 2ocw_A 218 QVLKP 222 (585)
T ss_pred EEccC
Confidence 88764
No 113
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=99.88 E-value=2.9e-21 Score=147.51 Aligned_cols=203 Identities=15% Similarity=0.212 Sum_probs=126.9
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee----eeEeec
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH----EHVITN 86 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~----~~~~~~ 86 (238)
++..|..+.+..|+++.|.|.+....... .....+.|+|++........ ...+..
T Consensus 3 vv~~P~~v~~~~G~~v~L~C~v~~~~~~~---------------------~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~ 61 (313)
T 4fqp_A 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEV---------------------THVSQLTWARHGESGSMAVFHQTQGPSYSE 61 (313)
T ss_dssp EEECCSEECCBTTSCEEECCEEECCTTSC---------------------CCCCEEEEEETTSSSCSEEEETTTEEEESS
T ss_pred EEcCCCEEEEecCCCEEEEEEEECCCCCc---------------------cceEEEEEEECCCCcceEEEecCCCceecc
Confidence 45677889999999999999997532211 01125899998654322111 112233
Q ss_pred CccEEEEEc----CCCeEEEEEcccCcccCeEEEEEEecCCCcc--eeeEEEEEcCCcccccccCCceeecCCCcEEEEE
Q psy7941 87 NARLSVTHN----DANTWTLNIRSVRREDRGYYMCQVNTNPMTK--QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160 (238)
Q Consensus 87 ~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C 160 (238)
..|+..... ...+++|.|.+++.+|+|.|+|.+.+..... ..+.|.+..+|..... .....+..++.+.+.|
T Consensus 62 ~~r~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~--~~~~~~~~~~~~~~~C 139 (313)
T 4fqp_A 62 SKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAE--VQKVQLTGEPVPMARC 139 (313)
T ss_dssp TTTEEESSCCTTSCCCBCCEEECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEE--ECCBCCCSSCEEEEEE
T ss_pred CcceEEEeeccCCcccceEEEECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceec--ccceEeecCceEEEEE
Confidence 445544321 1234589999999999999999986543333 3344555556654432 2334566788889999
Q ss_pred EEc-cccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC-ccceEEEEEEeec
Q psy7941 161 KAK-GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT-VSKRLMLHVHCTY 237 (238)
Q Consensus 161 ~~~-~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~-~~~~~~l~V~~~p 237 (238)
.+. +.|.+.+.|++++................ ....+.|.+.....+|.|.|+|.|.|..+.. ...++.|.|.++|
T Consensus 140 ~~~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~-~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P 217 (313)
T 4fqp_A 140 VSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGT-VTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPP 217 (313)
T ss_dssp EEEEEBSCCEEEEEETTCCEEEEEEEECSSTTC-EEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEE
T ss_pred EccCccCCcEEEeecCCccccccceeeeecccc-cccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCC
Confidence 874 68999999999544332221111111111 1122358888888999999999999987643 3456677777666
No 114
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=99.88 E-value=7.9e-22 Score=168.63 Aligned_cols=184 Identities=20% Similarity=0.370 Sum_probs=128.3
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEE
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT 93 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (238)
......+.+|+++.|.|.+.. +.+++.+.|++++..+.. ..++...
T Consensus 625 ~~~~~~~~~G~~v~L~C~~~~-------------------------~~~~~~i~W~~~g~~l~~---------~~~~~~~ 670 (816)
T 3dmk_A 625 AFEEGPAQVGQYLTLHCSVPG-------------------------GDLPLNIDWTLDGQAISE---------DLGITTS 670 (816)
T ss_dssp CCCSSCEESSCEEEEEEBCCC-------------------------SSSCCEEEEEETTBCCCG---------GGTCEEE
T ss_pred cccccccCCCCeEEEEEEEeC-------------------------CCCCCEEEEEECCeEcCC---------CCCeeEE
Confidence 344556888999999999752 122447999998765421 2233333
Q ss_pred EcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCeEEE
Q psy7941 94 HNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITW 172 (238)
Q Consensus 94 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W 172 (238)
........|.|.+++.+|+|.|+|.+.|. +.....+.|.|..+|.+... +....+..|+.+.|.|.+.|.|.|.++|
T Consensus 671 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~--~~~~~v~~G~~v~l~C~~~g~P~p~i~W 748 (816)
T 3dmk_A 671 RVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILE--PTDKAFAQGSDAKVECKADGFPKPQVTW 748 (816)
T ss_dssp EETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEEEEEEEEC--CCCEEEETTCCEEEECEEEEESCCEEEC
T ss_pred EcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEeCCceeee--cccceecCCCcEEEEEEEecCCCCeEEE
Confidence 33334458999999999999999999885 33455667888888776543 3456788999999999999999999999
Q ss_pred EeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEe
Q psy7941 173 RREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHC 235 (238)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~ 235 (238)
+++++. .................++.|.|.++..+|+|.|+|.|.|..|.. ..++.+..+.
T Consensus 749 ~k~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~v~~~~~~ 809 (816)
T 3dmk_A 749 KKAVGD-TPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSG-LSAVIMISVQ 809 (816)
T ss_dssp CEECSS-STTCCBCCCCBTTEEEETTEEEECSCCGGGCEEEEEEEECSSSSC-EEEEEEEEEE
T ss_pred EecCCC-CCccccccccCCCEEecCCEEEECcCChhhCeEEEEEEEeCCCCC-cEEEEEEEee
Confidence 995432 111000001111123355689999999999999999999999966 5555555443
No 115
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=99.88 E-value=9.6e-22 Score=150.23 Aligned_cols=182 Identities=18% Similarity=0.253 Sum_probs=118.9
Q ss_pred eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcC
Q psy7941 17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHND 96 (238)
Q Consensus 17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (238)
...+..|+++.|.|.+..... ..+.|.+.+.|++++..+.. ...++.....
T Consensus 112 ~~~~~~g~~v~l~C~~~~~~~--------------------~~g~p~~~i~W~k~~~~l~~--------~~~~~~~~~~- 162 (315)
T 1itb_B 112 KQKLPVAGDGGLVCPYMEFFK--------------------NENNELPKLQWYKDCKPLLL--------DNIHFSGVKD- 162 (315)
T ss_dssp EEEEETTSCEEEECSSCTTTC--------------------TTTTCCCCCEEEETTEECCC--------CSSSEEEETT-
T ss_pred ceEEecCCCeEEEEecccccc--------------------cCCCCCCEEEEEECCEECCC--------ccceEeecCc-
Confidence 356888999999998732110 02456778999998766432 1223322222
Q ss_pred CCeEEEEEcccCcccCeEEEEEEe-cCCCcc----eeeEEEEE-----cCCcccccccCCceeecCCCcEEEEEEEcccc
Q psy7941 97 ANTWTLNIRSVRREDRGYYMCQVN-TNPMTK----QMAFLEVV-----IPPDISSEETSGDMMVPEGGSAKLVCKAKGYP 166 (238)
Q Consensus 97 ~~~~~L~i~~~~~~d~G~Y~C~~~-~~~~~~----~~~~l~v~-----~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p 166 (238)
+|.|.+++.+|+|.|+|.+. +..... ....+.+. .+|.+... ......+..|+.+.|.|.+.|.|
T Consensus 163 ----~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~~~~~~~g~~v~l~C~~~g~P 237 (315)
T 1itb_B 163 ----RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSP-ANETMEVDLGSQIQLICNVTGQL 237 (315)
T ss_dssp ----EEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSC-CSEEEECCSSSCEEEEEEEEECT
T ss_pred ----eEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecC-CCCcEEEeCCCcEEEEEEEecCC
Confidence 89999999999999999998 443322 12223333 23333321 12235688999999999999999
Q ss_pred CCeEEEEeCCCeeeEeecCCCCCcce---------EEEeeceEEEEEeecCC-CeEEEEEeeeCCCCCccceEEEEEE
Q psy7941 167 TPKITWRREDNKEIIVRSNPPSSQKV---------FSVESEVLSLTKVTRSE-MGAYQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 167 ~~~~~W~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d-~G~y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
.|.+.|++ ++..+............ .....+.|.|.++..+| +|.|+|.|.|..|.. .+++.|.|.
T Consensus 238 ~p~i~W~~-~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~-~~~~~l~v~ 313 (315)
T 1itb_B 238 SDIAYWKW-NGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGID-AAYIQLIYP 313 (315)
T ss_dssp TSEEEEEE-TTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCE-EEEEEEECC
T ss_pred CCeeEEEE-CCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCce-eEEEEEEec
Confidence 99999999 55544321100000000 01223479999999999 999999999999944 777777764
No 116
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=99.88 E-value=1.9e-21 Score=144.55 Aligned_cols=183 Identities=15% Similarity=0.273 Sum_probs=116.2
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--cee--eeeee-----eeEee
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKA--VLAIH-----EHVIT 85 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~--~~~~~-----~~~~~ 85 (238)
+..+.+.+|+++.|.|.+.... .+.+.+.|+|+. ... ..... .....
T Consensus 7 p~~~~v~~G~~v~L~C~~~g~p------------------------~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~ 62 (257)
T 1f3r_B 7 SGPGLVRPSETLSLTCTVSGFS------------------------LTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSA 62 (257)
T ss_dssp ECCSEECTTSEEEEEEEEESSC------------------------TTTSCCEEEEEETTSCCEEEEEECSSSCEEECSS
T ss_pred CCCccccCCceEEEEEEEeccc------------------------CCCccEEEEEeCCCCCcEEEEEEecCCceeeCcc
Confidence 4456799999999999996421 014569999963 111 11100 00011
Q ss_pred cCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCCC----------cceeeEEEEEcCC-------------cccc
Q psy7941 86 NNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPM----------TKQMAFLEVVIPP-------------DISS 141 (238)
Q Consensus 86 ~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----------~~~~~~l~v~~~~-------------~~~~ 141 (238)
...|+.+... ....++|.|.+++.+|+|.|+|.+.+... ....+.|.|...+ ...+
T Consensus 63 ~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~ 142 (257)
T 1f3r_B 63 LKSRLSISRDTSKNQVFLKMNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKL 142 (257)
T ss_dssp SSTTEEEEEETTTTEEEEEEESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECS
T ss_pred cCCcEEEEEECCCCEEEEEECCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEE
Confidence 2467777654 34677999999999999999999987521 1123467776543 1112
Q ss_pred cccCCceeecCCCcEEEEEEEccccCCeEEEEeC--CCeee-EeecC----CCCCcceE---EEeeceEEEEEeecCCCe
Q psy7941 142 EETSGDMMVPEGGSAKLVCKAKGYPTPKITWRRE--DNKEI-IVRSN----PPSSQKVF---SVESEVLSLTKVTRSEMG 211 (238)
Q Consensus 142 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--~~~~~-~~~~~----~~~~~~~~---~~~~~~l~i~~~~~~d~G 211 (238)
...+..+.+.+|+.+.|.|.+.+.|.+.+.|++. +.... ..... ........ ......|.|.++..+|+|
T Consensus 143 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 222 (257)
T 1f3r_B 143 TQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVA 222 (257)
T ss_dssp CEETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCS
T ss_pred EccCCEEEEcCCCCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCE
Confidence 2224456688999999999999988889999993 32221 11000 00011111 112347999999999999
Q ss_pred EEEEEeeeCC
Q psy7941 212 AYQCIAANGV 221 (238)
Q Consensus 212 ~y~C~~~n~~ 221 (238)
.|+|.|.|..
T Consensus 223 ~Y~C~a~n~~ 232 (257)
T 1f3r_B 223 TYFCYQYNNG 232 (257)
T ss_dssp EEEEEEESSS
T ss_pred EEEEEEeCCC
Confidence 9999999964
No 117
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=99.88 E-value=1.5e-21 Score=141.07 Aligned_cols=191 Identities=19% Similarity=0.265 Sum_probs=120.5
Q ss_pred eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eeeeee----eE
Q psy7941 12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLAIHE----HV 83 (238)
Q Consensus 12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~~~----~~ 83 (238)
...+..+.+.+|+++.|.|.+....... .+.+.+.+.|+|++... ...... ..
T Consensus 4 ~~~p~~v~v~~G~~v~L~C~~~~~~~~~-------------------~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~ 64 (214)
T 2zg1_A 4 LQVQKSVTVQEGLCVLVPCSFSYPWRSW-------------------YSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVK 64 (214)
T ss_dssp EECCSEEEEETTCCEEECCEEECCCCCC-------------------SCCCCEEEEEEETTCCGGGCCBSEESCTTSCBC
T ss_pred eeCCcEEEEecCccEEEeeeeecCCccc-------------------CCCCceEEEEEecCCCCcccceEecCCcccccC
Confidence 3557788999999999999986321000 01235679999976431 111000 00
Q ss_pred eecCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCCC-----cceeeEEEEEcCCcccccccCCceeecCCCcEE
Q psy7941 84 ITNNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPM-----TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAK 157 (238)
Q Consensus 84 ~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-----~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~ 157 (238)
....+|+.+... ....++|.|.+++.+|+|.|+|.+.+... ....+.|.|..++..+....+. .+.+|+.+.
T Consensus 65 ~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~--~~~~G~~v~ 142 (214)
T 2zg1_A 65 PETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLE--PLESGRPTR 142 (214)
T ss_dssp TTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--C--CCCTTCCEE
T ss_pred ccccCceEEeccCCCCeEEEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCc--cccCCCeEE
Confidence 112356665442 23456899999999999999999976541 1245667887644322111121 267899999
Q ss_pred EEEEEcc----ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC-CccceEEEE
Q psy7941 158 LVCKAKG----YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP-TVSKRLMLH 232 (238)
Q Consensus 158 l~C~~~~----~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~-~~~~~~~l~ 232 (238)
|.|.+.+ .|.|.+.|++++..... .. ....+.|.|..+..+|.|.|+|.|.|..+. ..++++.|.
T Consensus 143 L~C~~~~~~~~~p~p~v~W~~~~~~~~~--------~~--~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~ 212 (214)
T 2zg1_A 143 LSCSLPGSCEAGPPLTFSWTGNALSPLD--------PE--TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLN 212 (214)
T ss_dssp EEEECTTCCSCSSCCEEEEESSTTSSSC--------SS--CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECC
T ss_pred EEEEeccCCCCCCCceEEEeCCCCccCC--------CC--ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEE
Confidence 9999976 37889999995432110 01 134557999999889999999999998652 335555554
Q ss_pred E
Q psy7941 233 V 233 (238)
Q Consensus 233 V 233 (238)
|
T Consensus 213 V 213 (214)
T 2zg1_A 213 V 213 (214)
T ss_dssp C
T ss_pred e
Confidence 4
No 118
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=99.88 E-value=8.7e-22 Score=142.04 Aligned_cols=181 Identities=18% Similarity=0.286 Sum_probs=115.2
Q ss_pred cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--ceeeeee---eeeE
Q psy7941 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKAVLAI---HEHV 83 (238)
Q Consensus 9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~~~~~---~~~~ 83 (238)
|.+..++ .+.+.+|+++.|.|.+. +.+.+.|+|+. ....... ....
T Consensus 2 ~~v~~~~-~~~v~~G~~v~L~C~~~----------------------------~~~~v~W~k~~~~~~~~~~~~~~~~~~ 52 (211)
T 3tv3_L 2 SALTQPP-SASGSPGQSITISCTGT----------------------------SNNFVSWYQQHAGKAPKLVIYDVNKRP 52 (211)
T ss_dssp -CCBCCS-EEEECTTCEEEEEEECC----------------------------CSSCEEEEEECTTSCCEEEEBTTTBCC
T ss_pred ceEEeCc-eEEEcCCCCEEEEEEEC----------------------------CCCeEEEEEECCCCCCEEEEEEecccC
Confidence 4455666 88999999999999985 24569999952 2111100 0000
Q ss_pred eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC---cceeeEEEEE----cCCcccccccCCceeecCCCcE
Q psy7941 84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM---TKQMAFLEVV----IPPDISSEETSGDMMVPEGGSA 156 (238)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l~v~----~~~~~~~~~~~~~~~~~~g~~~ 156 (238)
.....|+.+.. ....++|.|.+++.+|+|.|+|.+.+... ....+.|.|. .+|.+.... ....+..|+.+
T Consensus 53 ~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~--~~~~~~~g~~v 129 (211)
T 3tv3_L 53 SGVPDRFSGSK-SGNTASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFP--PSSEELQANKA 129 (211)
T ss_dssp TTSCTTEEEEE-ETTEEEEEEESCCGGGCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEEC--CCHHHHHTTCE
T ss_pred CCCcCcEEEEc-cCCEEEEEECCCChhHCEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecC--CchhhhcCCCe
Confidence 11235676655 44567999999999999999999987543 3344567776 344443221 12223369999
Q ss_pred EEEEEEcccc--CCeEEEEeCCCeeeEee---cCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 157 KLVCKAKGYP--TPKITWRREDNKEIIVR---SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 157 ~l~C~~~~~p--~~~~~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
.|.|.+.|.+ .+.+.|++ ++..+... ................|.|..+..+|.|.|+|.|.|..+
T Consensus 130 ~l~C~~~g~~p~~~~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~ 199 (211)
T 3tv3_L 130 TLVCLISDFYPGAVTVAWKA-DSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGS 199 (211)
T ss_dssp EEEEEEEEEBSSCCEEEEEE-TTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTE
T ss_pred EEEEEeeeecCCCeEEEEEE-CCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCC
Confidence 9999998853 46999999 55544210 000000000111223688888888899999999999886
No 119
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.88 E-value=8.2e-21 Score=139.90 Aligned_cols=187 Identities=17% Similarity=0.243 Sum_probs=116.4
Q ss_pred cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e-e--eeeeee---
Q psy7941 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K-A--VLAIHE--- 81 (238)
Q Consensus 9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~-~--~~~~~~--- 81 (238)
+.+...+..+.+.+|+++.|.|.+.... .+.+.+.|+|+.. . . ......
T Consensus 2 ~~v~q~p~~v~~~~G~~v~L~C~~~~~~------------------------~~~~~v~W~r~~~~~~~~~~~~~~~~~~ 57 (242)
T 1hxm_B 2 GHLEQPQISSTKTLSKTARLECVVSGIT------------------------ISATSVYWYRERPGEVIQFLVSISYDGT 57 (242)
T ss_dssp CEEECCCSEEEEETTCCEEEEEEEESSC------------------------TTTSCEEEEEECTTSCCEEEEEECSSSC
T ss_pred CccCcCCceEEecCCCcEEEEEEeCCcc------------------------ccCceEEEEEeCCCCCcEEEEEEecCCc
Confidence 3466778899999999999999997521 1245699999642 1 1 111110
Q ss_pred eEee---cCccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEecCC--C------cceeeEEEEEcC-------Cccccc
Q psy7941 82 HVIT---NNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVNTNP--M------TKQMAFLEVVIP-------PDISSE 142 (238)
Q Consensus 82 ~~~~---~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~~~~--~------~~~~~~l~v~~~-------~~~~~~ 142 (238)
.... .++|+.+..... ..++|.|.+++.+|+|.|+|.+.+.. . ....+.|.|... |.+...
T Consensus 58 ~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~ 137 (242)
T 1hxm_B 58 VRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIF 137 (242)
T ss_dssp EEECTTCCTTSEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCC
T ss_pred eecCCcccCCeEEEEecCCCcEEEEEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEE
Confidence 0111 357888765433 67899999999999999999997642 1 122456778753 333222
Q ss_pred ccCCceeecCCCcEEEEEEEccc-cC-CeEEEEeCCCeeeEeec-C-CCCCcceEEEeeceEEEEEeecCCCeEEEEEee
Q psy7941 143 ETSGDMMVPEGGSAKLVCKAKGY-PT-PKITWRREDNKEIIVRS-N-PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAA 218 (238)
Q Consensus 143 ~~~~~~~~~~g~~~~l~C~~~~~-p~-~~~~W~~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 218 (238)
. +....+..|+.+.|.|.+.|. |. +.+.|++++...+.... . ....... ....+.|.|..... + |.|+|.|.
T Consensus 138 ~-p~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~-~~~~s~L~i~~~~~-~-g~y~C~v~ 213 (242)
T 1hxm_B 138 L-PSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDT-YMKFSWLTVPEKSL-D-KEHRCIVR 213 (242)
T ss_dssp C-CCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSS-EEEEEEEEECTGGG-G-SCEEEEEE
T ss_pred C-CChhhcccCCCceEEEEEeeEECCCeEEEEEcCCCEeecCccccceecCCCc-EEEEEEEEEccccC-C-CEEEEEEE
Confidence 1 222345679999999999885 65 69999995542331110 0 0000011 11223577766554 4 99999999
Q ss_pred eCCCC
Q psy7941 219 NGVPP 223 (238)
Q Consensus 219 n~~g~ 223 (238)
|..+.
T Consensus 214 n~~~~ 218 (242)
T 1hxm_B 214 HENNK 218 (242)
T ss_dssp ETTSG
T ss_pred eCCCC
Confidence 99873
No 120
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=99.88 E-value=2.9e-22 Score=151.40 Aligned_cols=192 Identities=15% Similarity=0.257 Sum_probs=124.9
Q ss_pred CCccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE
Q psy7941 4 VRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV 83 (238)
Q Consensus 4 ~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~ 83 (238)
|...+..+...+..+.+.+|+++.|.|.+.+. . +.+.+.|+++++....
T Consensus 85 V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~--~-----------------------~~~~v~W~~~~~~~~~------ 133 (292)
T 4dkd_C 85 VKDPARPWNVLAQEVVVFEDQDALLPCLLTDP--V-----------------------LEAGVSLVRVRGRPLM------ 133 (292)
T ss_dssp ECCSSCCEEESCSEEEEETTSCEECCEEESSG--G-----------------------GGSSEEEEEGGGCCCC------
T ss_pred EcCccccccccCCeEEEcCCCcEEEeeeCCCC--C-----------------------cceeEEEEecCCCccc------
Confidence 33333345666778889999999999999631 1 1256999997554332
Q ss_pred eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEc----CCcccccccCCceeecCCCcEE
Q psy7941 84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVI----PPDISSEETSGDMMVPEGGSAK 157 (238)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~----~~~~~~~~~~~~~~~~~g~~~~ 157 (238)
...++...... .|.|.+++.+|+|.|+|.+.+.... +..+.|.|.. +|.+... +....+..|+.+.
T Consensus 134 --~~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~--~~~~~~~~g~~v~ 205 (292)
T 4dkd_C 134 --RHTNYSFSPWH----GFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLV--PAELVRIRGEAAQ 205 (292)
T ss_dssp --SSCCEECCSSS----CCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEE--SSCBCCCSSSCEE
T ss_pred --cCCcccccCCc----eEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEcc--CCceeEecCCCEE
Confidence 12222222111 5999999999999999999865432 3356677775 5555432 3334567899999
Q ss_pred EEEEEccccC-CeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEee
Q psy7941 158 LVCKAKGYPT-PKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCT 236 (238)
Q Consensus 158 l~C~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~ 236 (238)
|.|.+.+.|. +.+.|++++. .+........... .....+.|.|.++..+|.|.|+|.|.|..|. .+.++.|.|...
T Consensus 206 l~C~~~~~~~~~~~~w~~~~~-~~~~~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~~~ 282 (292)
T 4dkd_C 206 IVCSASSVDVNFDVFLQHNNT-KLAIPQQSDFHNN-RYQKVLTLNLDQVDFQHAGNYSCVASNVQGK-HSTSMFFRVVES 282 (292)
T ss_dssp EEEEEEESSSCCEEECCBSSC-CCCCCBEEEEETT-EEEEEEEEEESSCCTTSCEEEEEEEECSSCE-EEEEEEECC---
T ss_pred EEEEecCCCCceEEEEeCCCc-ccccCccceeccc-eeeeEEEEEECccChhcCeEEEEEEecCCCC-ceeEEEEEEeeC
Confidence 9999988665 4788888443 2211100000000 1223457999999999999999999999994 488888888764
Q ss_pred c
Q psy7941 237 Y 237 (238)
Q Consensus 237 p 237 (238)
+
T Consensus 283 ~ 283 (292)
T 4dkd_C 283 A 283 (292)
T ss_dssp -
T ss_pred C
Confidence 3
No 121
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=99.88 E-value=2.3e-21 Score=137.97 Aligned_cols=171 Identities=16% Similarity=0.244 Sum_probs=108.6
Q ss_pred ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee-----E-ee-
Q psy7941 13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH-----V-IT- 85 (238)
Q Consensus 13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~-----~-~~- 85 (238)
..+..+.+.+|+++.|.|.+... .+.+.+.|++++..+....... . ..
T Consensus 3 ~~p~~v~~~~G~~v~L~C~~~~~-------------------------~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~ 57 (193)
T 2if7_A 3 LTPLMVNGILGESVTLPLEFPAG-------------------------EKVNFITWLFNETSLAFIVPHETKSPEIHVTN 57 (193)
T ss_dssp CCCEEEEEETTSCEEECCCCCCC-------------------------SCCCEEEEEETTEEEEEEECCSSSCCEEEECC
T ss_pred CCCeEEEEEecCeEEEeccCCCc-------------------------ccccEEEEEECCEEEEEEecccCCCCceeecC
Confidence 45778899999999999998521 1234699999754332111100 0 00
Q ss_pred --cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCC-cEEEEEE
Q psy7941 86 --NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGG-SAKLVCK 161 (238)
Q Consensus 86 --~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~-~~~l~C~ 161 (238)
..+|+.+. .+.+|.|.+++.+|+|.|.|.+.+... ....+.|.|..++......... .....|. .+.|.|.
T Consensus 58 ~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~-~~~~~g~~~v~L~C~ 132 (193)
T 2if7_A 58 PKQGKRLNFT----QSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHS-QLFQNMTCELHLTCS 132 (193)
T ss_dssp HHHHTTEEEC----TTCCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCEEEEEEECC-C---CSSEEEEEEEE
T ss_pred ccccccEEEC----CCeEEEECCCCcccCceEEEEEEecCCCeEEEEEEEEEccCCCCeEecCc-eeecCCCceEEEEEE
Confidence 11355543 245899999999999999999977543 2345567776554322111111 1233455 7999999
Q ss_pred Ecc-ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecC-CCeEEEEEeeeCCCCCccceE
Q psy7941 162 AKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS-EMGAYQCIAANGVPPTVSKRL 229 (238)
Q Consensus 162 ~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-d~G~y~C~~~n~~g~~~~~~~ 229 (238)
+.+ .|.|.+.|++ ++..+. .+..|.|.....+ |.|.|+|.|.|..|.. +..+
T Consensus 133 ~~g~~p~p~i~W~~-~g~~l~--------------~~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~-s~~~ 186 (193)
T 2if7_A 133 VEDADDNVSFRWEA-LGNTLS--------------SQPNLTVSWDPRISSEQDYTCIAENAVSNL-SFSV 186 (193)
T ss_dssp EESCCTTCEEEEEE-TTEEEE--------------SSSEEEEEECTTTCSCCEEEEEEEETTEEE-EEEE
T ss_pred EecCCCceEEEEEe-CCEEcC--------------CCCeEEEEeccCcCCCCcEEEEEECCCCcc-cccc
Confidence 988 4588999999 554331 1234666544454 8999999999999843 4443
No 122
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=99.87 E-value=5.9e-21 Score=150.55 Aligned_cols=198 Identities=22% Similarity=0.392 Sum_probs=136.0
Q ss_pred EEecCCEEEEeEEecCCCceeeeeeeeee---------------eecCCeEEeccC----CCCceEEEEeCCceeeeeee
Q psy7941 20 IAQGRDAIFTCVVNNLGGHRVSSSVTDTH---------------VNTGGSIVFPTD----SSAMKVAWIKADTKAVLAIH 80 (238)
Q Consensus 20 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~----~~~~~~~W~~~~~~~~~~~~ 80 (238)
+...|.+.|+|.+.|..+...+..+.+.+ +..|+.+.+.|. .|.+.+.|++++.....
T Consensus 84 ~~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~--- 160 (404)
T 3p3y_A 84 RPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPIT--- 160 (404)
T ss_dssp CTTSSCEEEEEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCC---
T ss_pred CCccCCEEEEEEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccC---
Confidence 44578999999999887766544443332 456788888775 47889999998654322
Q ss_pred eeEeecCccEEEEEcCCCeEEEEEcccCccc-CeEEEEEEecCCCc----ceeeEEEEEcC-------Ccccccc-cCCc
Q psy7941 81 EHVITNNARLSVTHNDANTWTLNIRSVRRED-RGYYMCQVNTNPMT----KQMAFLEVVIP-------PDISSEE-TSGD 147 (238)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~~~~~~~~----~~~~~l~v~~~-------~~~~~~~-~~~~ 147 (238)
...++..... .+|.|.+++.+| +|.|+|.+.+.... .....+.+... |.+.... ....
T Consensus 161 -----~~~~~~~~~~----~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~ 231 (404)
T 3p3y_A 161 -----QDKRVSQGHN----GDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASS 231 (404)
T ss_dssp -----CCSSEEECTT----SCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEE
T ss_pred -----CCCcEEEcCC----CcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCC
Confidence 1223332222 279999999999 59999999875332 12234555432 2221111 1123
Q ss_pred eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccc
Q psy7941 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSK 227 (238)
Q Consensus 148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~ 227 (238)
..+.+|+.+.|.|.+.|.|.+.+.|++ ++..+... .......+..|.|.++..+|.|.|+|.|.|..|. .+.
T Consensus 232 ~~~~~G~~v~l~C~~~g~p~~~v~W~~-~~~~~~~~------~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~ 303 (404)
T 3p3y_A 232 QMVLRGMDLLLECIASGVPTPDIAWYK-KGGDLPSD------KAKFENFNKALRITNVSEEDSGEYFCLASNKMGS-IRH 303 (404)
T ss_dssp EEEETTSCEEEECCBCCSSCCEEEEEE-TTBCCCTT------TEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCE-EEE
T ss_pred ceEecCCCEEEEEEECCCCCCcEEEEE-CCEECCCC------cccccccCceEEEccCCHhHCEEEEEEEEeCCCc-EEE
Confidence 567899999999999999999999999 44433211 1122333568999999999999999999999994 578
Q ss_pred eEEEEEEeec
Q psy7941 228 RLMLHVHCTY 237 (238)
Q Consensus 228 ~~~l~V~~~p 237 (238)
.+.|.|..+|
T Consensus 304 ~~~l~V~~~p 313 (404)
T 3p3y_A 304 TISVRVKAAP 313 (404)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEeCCC
Confidence 8899998876
No 123
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.87 E-value=1.7e-20 Score=137.89 Aligned_cols=188 Identities=20% Similarity=0.265 Sum_probs=119.2
Q ss_pred cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--eee-eeee--eeE
Q psy7941 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KAV-LAIH--EHV 83 (238)
Q Consensus 9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~~-~~~~--~~~ 83 (238)
..+...+..+.+.+|+++.|.|.+..... ..+.+.+.|+|+.. ... .... ...
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~----------------------~~~~~~i~W~k~~~~~~~~~~~~~~~~~~ 59 (240)
T 1moe_A 2 IVLTQSPASLAVSLGQRATMSCRAGESVD----------------------IFGVGFLHWYQQKPGQPPKLLIYRASNLE 59 (240)
T ss_dssp CCEEEECSEEEECTTSCEEEEEEESSCCE----------------------ETTEECEEEEEECTTSCCEEEEETTTEEC
T ss_pred CceEeeCCeEEecCCCCEEEEEeCCCccc----------------------cCCCceEEEEEECCCCCceEEEEEecccC
Confidence 35667788899999999999999964320 00145699999632 111 1000 000
Q ss_pred eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEcCCc----ccccccCCceeecCCCcEE
Q psy7941 84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIPPD----ISSEETSGDMMVPEGGSAK 157 (238)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~~----~~~~~~~~~~~~~~g~~~~ 157 (238)
.....|+.+.. ....++|.|.+++.+|+|.|+|.+.+... ....+.|.|..++. ......+....+.+|+.+.
T Consensus 60 ~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~ 138 (240)
T 1moe_A 60 SGIPVRFSGTG-SRTDFTLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVK 138 (240)
T ss_dssp TTCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEE
T ss_pred cCCCccEEEEe-cCCeEEEEEcCCChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEE
Confidence 11245777755 34567999999999999999999977532 23455677775432 1111224456788999999
Q ss_pred EEEEEcccc--CCeEEEEeCC-Ceee--Ee-ec--------CCCCCcceEEEe-----eceEEEEEeecCCCeEEEEEee
Q psy7941 158 LVCKAKGYP--TPKITWRRED-NKEI--IV-RS--------NPPSSQKVFSVE-----SEVLSLTKVTRSEMGAYQCIAA 218 (238)
Q Consensus 158 l~C~~~~~p--~~~~~W~~~~-~~~~--~~-~~--------~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~y~C~~~ 218 (238)
|.|.+.+.| .+.+.|++++ +... .. .. ............ ...|.|.++..+|+|.|+|.|.
T Consensus 139 L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 218 (240)
T 1moe_A 139 LSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPF 218 (240)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred EEEEEcCccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEE
Confidence 999999876 4599999842 1111 00 00 000111222211 2479999999999999999998
Q ss_pred e
Q psy7941 219 N 219 (238)
Q Consensus 219 n 219 (238)
+
T Consensus 219 ~ 219 (240)
T 1moe_A 219 G 219 (240)
T ss_dssp S
T ss_pred e
Confidence 5
No 124
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=99.87 E-value=1.8e-22 Score=146.65 Aligned_cols=194 Identities=17% Similarity=0.228 Sum_probs=121.4
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCC-CceEEEEeCCceeee--ee--eeeEeecCc
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSS-AMKVAWIKADTKAVL--AI--HEHVITNNA 88 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~W~~~~~~~~~--~~--~~~~~~~~~ 88 (238)
.+..+.+.+|+++.|.|.+....... . ...+.|+|++..... .. ....+...+
T Consensus 5 ~p~~v~~~~G~~v~L~C~~~~~~~~~----------------------~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~ 62 (221)
T 3eow_R 5 APTQVPGFLGDSVTLPCYLQVPNMEV----------------------THVSQLTWARHGESGSMAVFHQTQGPSYSESK 62 (221)
T ss_dssp CCCCCCCCCSSCCEEECCCCCCSSSC----------------------CCEEEEEECBSSSCSSCCCEEESSSEEECSCS
T ss_pred CCCcEEEEeCCCEEEEeeeccCCCCC----------------------ccceEEEEEeCCCCceEEEEECCCCCCcCCCC
Confidence 35567788999999999985321110 0 124999998543211 11 111122245
Q ss_pred cEEEEEc----CCCeEEEEEcccCcccCeEEEEEEecCC--CcceeeEEEEEcCCcccccccCCceeecCCCcE-EEEEE
Q psy7941 89 RLSVTHN----DANTWTLNIRSVRREDRGYYMCQVNTNP--MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSA-KLVCK 161 (238)
Q Consensus 89 ~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~-~l~C~ 161 (238)
|+.+... .....+|.|.+++.+|+|.|+|.+.+.. .....+.|.|..+|.+....... . ..|+.+ .|.|.
T Consensus 63 r~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~P~~~~~~~~~--~-~~g~~~~~l~C~ 139 (221)
T 3eow_R 63 RLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKV--Q-LTGEPVPMARCV 139 (221)
T ss_dssp SCEEESSCSSCCCCCCEEECCCSSCCCCSCBEEEEEESSSCSCEEECCCCCCCCCEEEEEEECC--C-CCSSSCCEEEEE
T ss_pred cEEEecccCCCCCCCceEEEccCChHHCeEEEEEEEeCCCCceEEEEEEEEEECCCceeecCCc--c-cCCceEEEEEEE
Confidence 6665542 2245699999999999999999997643 34445567777777665432221 1 567777 59999
Q ss_pred Ec-cccCCeEEEEeCCCeee-EeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 162 AK-GYPTPKITWRREDNKEI-IVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 162 ~~-~~p~~~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
+. ++|.|.++|++++.... ........... ....+.|.|..+..+|.|.|+|.|.|..+ ...+.+.|...|
T Consensus 140 ~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~--~~~~s~L~i~~~~~~d~g~ytC~a~n~~~---~~~~~~~v~~~~ 212 (221)
T 3eow_R 140 STGGRPPAQITWHSDLGGMPQTSQVPGFLSGT--VTVTSLWILVPSSQVDGKQVTCKVEHESF---EKPQLLTVSLTV 212 (221)
T ss_dssp EESCSSCCCEEEECSSSCCCCCEEECCCCBTT--BCCEEEEECCCCSCCCCCCEEEEECCSCS---SSCEEEEECCCC
T ss_pred CCCccCCCeeEEEeCCCCCCccceeecCCCCc--EEEEEEEEEeCCHHHCCCeEEEEEECCCC---CCCeEEEEEEEE
Confidence 86 79999999998433221 11100000011 11234688999999999999999999887 345555666544
No 125
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=99.87 E-value=2e-20 Score=139.03 Aligned_cols=200 Identities=18% Similarity=0.242 Sum_probs=122.9
Q ss_pred eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee---------ee
Q psy7941 12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH---------EH 82 (238)
Q Consensus 12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~---------~~ 82 (238)
+..+..+.+.+|+++.|.|.+.... .+.+.+.|+|.......... ..
T Consensus 12 ~~~p~~~~v~~G~~v~L~C~~~~~~------------------------~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~ 67 (257)
T 3gkz_A 12 LQESGPSLVKPSQTLSLTCSVTGDS------------------------VTSGYWSWIRQFPGNKLDYMGYISYRGSTYY 67 (257)
T ss_dssp EEEECCSEECTTCCEEEEEEEEESC------------------------CSSCEEEEEEECTTSCEEEEEEEETTCCEEE
T ss_pred EECCCCeEEcCCCcEEEEEEEEccc------------------------ccceEEEEEEECCCCCcEEEEEEecCCcEEe
Confidence 4556777899999999999997521 12457999995321111000 00
Q ss_pred EeecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCC---C--cceeeEEEEEcC------------Cccccccc
Q psy7941 83 VITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNP---M--TKQMAFLEVVIP------------PDISSEET 144 (238)
Q Consensus 83 ~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~--~~~~~~l~v~~~------------~~~~~~~~ 144 (238)
......|+.+.... ...++|.|.+++.+|+|.|+|.+.+.. . ....+.|.|..+ +.+.+...
T Consensus 68 ~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~ 147 (257)
T 3gkz_A 68 NPSLKSRISITRDTSKNQVYLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQS 147 (257)
T ss_dssp CTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECS
T ss_pred cccccccEEEEEecCCceEEEEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcC
Confidence 01124577776542 457789999999999999999997751 1 123445777654 12222333
Q ss_pred CCceeecCCCcEEEEEEEccccCC-eEEEEeCC-Ce-e-eEeecC----CCCCcceEEE---eeceEEEEEeecCCCeEE
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTP-KITWRRED-NK-E-IIVRSN----PPSSQKVFSV---ESEVLSLTKVTRSEMGAY 213 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~-~~-~-~~~~~~----~~~~~~~~~~---~~~~l~i~~~~~~d~G~y 213 (238)
+....+.+|+.+.|.|.+.+.|.+ .+.|++.. +. . ...... .......... ....|.|.++..+|+|.|
T Consensus 148 p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y 227 (257)
T 3gkz_A 148 PAIMSASPGEKVTLTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASY 227 (257)
T ss_dssp CSEEEECTTCCEEEEEEESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred CceEEEeCCCcEEEEEEEccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEE
Confidence 455778999999999999998777 99999832 11 1 111100 0000111111 123699999999999999
Q ss_pred EEEeeeCCCCCccceEEEEEEe
Q psy7941 214 QCIAANGVPPTVSKRLMLHVHC 235 (238)
Q Consensus 214 ~C~~~n~~g~~~~~~~~l~V~~ 235 (238)
+|.+.+........-..|.|..
T Consensus 228 ~C~~~~~~~~~fg~gt~l~v~~ 249 (257)
T 3gkz_A 228 FCHQWSSFPFTFGSGTKLEIKR 249 (257)
T ss_dssp EEEECSSSSCEECCCEEEEECC
T ss_pred EEEEccCCceEEcCCEEEEEEe
Confidence 9999875432223333455543
No 126
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=99.87 E-value=3.2e-20 Score=136.72 Aligned_cols=184 Identities=18% Similarity=0.263 Sum_probs=116.5
Q ss_pred cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eeee-eeeE
Q psy7941 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLAI-HEHV 83 (238)
Q Consensus 9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~~-~~~~ 83 (238)
+.+...+..+.+.+|+++.|.|.+.. .|.+.+.|+|+.. .. .... ....
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~--------------------------~~~~~v~W~k~~~~~~~~~~~~~~~~~~ 55 (242)
T 2znx_A 2 IVLTQSPATLSVTPGNSVSLSCRASQ--------------------------SIGNNLHXYQQKSHESPRLLIKYASQSI 55 (242)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEESS--------------------------CCTTCEEEEEECTTSCCEEEEETTTEEC
T ss_pred CcEEEcCCeEEEcCCCcEEEEEEeCC--------------------------CCCceEEEEEeCCCCCceEEEEeccccC
Confidence 45677888899999999999999853 2355799999642 11 1100 0000
Q ss_pred eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEcCCc------------ccccccCCcee
Q psy7941 84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVIPPD------------ISSEETSGDMM 149 (238)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~~~~------------~~~~~~~~~~~ 149 (238)
.....|+.+.. ....++|.|.+++.+|+|.|+|.+.+.... ...+.|.|..++. +.. ..+....
T Consensus 56 ~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 133 (242)
T 2znx_A 56 SGIPSRFSGSG-SGTDFTLSINSVETEDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQL-QESGPSL 133 (242)
T ss_dssp TTSCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEE-EEECCSE
T ss_pred CCCCCCEEEec-CCCEEEEEECCCChHHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceee-ecCCcce
Confidence 01245777654 345669999999999999999999765321 2345677765542 111 1122345
Q ss_pred ecCCCcEEEEEEEcccc--CCeEEEEeCC-CeeeE--eec-CC-------CCCcceEEE-----eeceEEEEEeecCCCe
Q psy7941 150 VPEGGSAKLVCKAKGYP--TPKITWRRED-NKEII--VRS-NP-------PSSQKVFSV-----ESEVLSLTKVTRSEMG 211 (238)
Q Consensus 150 ~~~g~~~~l~C~~~~~p--~~~~~W~~~~-~~~~~--~~~-~~-------~~~~~~~~~-----~~~~l~i~~~~~~d~G 211 (238)
+.+|+.+.|.|.+.+.| .+.+.|++++ +.... ... .. ......... ....|.|.++..+|+|
T Consensus 134 v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G 213 (242)
T 2znx_A 134 VKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTA 213 (242)
T ss_dssp ECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred ecCCCeEEEEEEEEccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCE
Confidence 88999999999998865 5789999843 22111 100 00 001122211 1237999999999999
Q ss_pred EEEEEeeeC
Q psy7941 212 AYQCIAANG 220 (238)
Q Consensus 212 ~y~C~~~n~ 220 (238)
.|+|.|.|.
T Consensus 214 ~Y~C~a~~~ 222 (242)
T 2znx_A 214 TYYCANXDG 222 (242)
T ss_dssp EEEEEETTS
T ss_pred EEEEeccCC
Confidence 999999985
No 127
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=99.87 E-value=2.8e-21 Score=140.20 Aligned_cols=181 Identities=18% Similarity=0.251 Sum_probs=111.3
Q ss_pred ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC-ceeeeeeee-------e--
Q psy7941 13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD-TKAVLAIHE-------H-- 82 (238)
Q Consensus 13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~-~~~~~~~~~-------~-- 82 (238)
..+..+.+.+|+++.|.|.+.... .+.+.+.|+|+. +........ .
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~~~~------------------------~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~ 60 (219)
T 1c1e_H 5 VQSGPELKKPGETVKISCKASGYM------------------------FTNYGMNWVKQAPGKALKLMGWINPYTGESTF 60 (219)
T ss_dssp EECCCEEECTTCCEEEEEEEESSC------------------------GGGSEEEEEEECTTSCEEEEEEECSSSCCEEE
T ss_pred eCCCCeEecCCCcEEEEEEEeCcc------------------------cccceEEEEEeCCCCCcEEEEEEecCCCceEe
Confidence 345667899999999999997421 014569999974 221111000 0
Q ss_pred EeecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCC-----cceeeEEEEEcC----CcccccccCCceeecC
Q psy7941 83 VITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPM-----TKQMAFLEVVIP----PDISSEETSGDMMVPE 152 (238)
Q Consensus 83 ~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-----~~~~~~l~v~~~----~~~~~~~~~~~~~~~~ 152 (238)
.....+|+.+.... ...++|.|.+++.+|+|.|+|.+.+... ....+.|.|... |.+... .....+..
T Consensus 61 ~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~--~~~~~~~~ 138 (219)
T 1c1e_H 61 ADDFKGRFAFFLETSATTAYLQINNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPL--APGSAAQT 138 (219)
T ss_dssp CGGGCSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEE--CCCSSSCC
T ss_pred CcccCCcEEEEEecCCCEEEEEECCCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEe--cCcccccc
Confidence 00124677766532 3467999999999999999999987541 123456677653 222221 11223567
Q ss_pred CCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCC-CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 153 GGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPP-SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 153 g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
|+.+.|.|.+.| +|.| .+.|++++ ..+....... ..... ....+.|.|. ....|.|.|+|.|.|..|
T Consensus 139 g~~v~L~C~~~g~~P~p~~v~W~~~g-~~~~~~~~~~~~~~~~-~~~~s~L~i~-~~~~d~g~Y~C~a~n~~~ 208 (219)
T 1c1e_H 139 NSMVTLGCLVKGYFPEPVTVTWNSGS-LSSGVHTFPAVLQSDL-YTLSSSVTVP-SSPRPSETVTCNVAHPAS 208 (219)
T ss_dssp SSEEEEEEEEEEEBSSCCEEEEGGGT-BCTTEEECCCEESSSC-EEEEEEEEEE-SSSTTTSCCEEEEEEGGG
T ss_pred CCeEEEEEEcccccCCCeEEEEEeCC-cccceEecCCcccCCe-EEEEEEEEEe-cccCCCCEEEEEEEeCCC
Confidence 999999999998 8998 99999954 3321111100 00011 1122357774 444466999999999887
No 128
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=99.87 E-value=3.6e-21 Score=145.21 Aligned_cols=177 Identities=18% Similarity=0.219 Sum_probs=124.7
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
..+|.+...+..+.+.+|+++.|.|.+.. .+.|++++.....
T Consensus 2 ~p~p~i~~~~~~~~v~~G~~v~L~C~~~~------------------------------~v~W~~~~~~~~~-------- 43 (289)
T 3ejj_X 2 DPAPVIEPSGPELVVEPGETVTLRCVSNG------------------------------SVEWDGPISPYWT-------- 43 (289)
T ss_dssp --CCEEESCSSEEEECTTCCEEEEEECSS------------------------------CCEEECSCSSSSE--------
T ss_pred CCCcEecCCCceEEECCCCCEEEEEEeCC------------------------------cEEEccCCCceEE--------
Confidence 35677777888899999999999999852 3899986543210
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG 164 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~ 164 (238)
. .......+|.|.+++.+|+|.|+|.+.+. +.....+.|.|..++.... ..+....+.+|+.+.|.|.+.+
T Consensus 44 ------~-~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~-~~~~~~~v~~g~~v~L~C~~~~ 115 (289)
T 3ejj_X 44 ------L-DPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWN-LLAQEVTVVEGQEAVLPCLITD 115 (289)
T ss_dssp ------E-CCCSSCCEEEESSCCGGGCEEEEEECCC-----CEEEEEEECCSSCSEE-ESCSEEEEETTSCEEECEEESC
T ss_pred ------E-eccCCccEEEEeeeccccCEEEEEEEeccCCcceeEEEEEEeCCCccee-cccceEEEecCCceEeEEEccC
Confidence 0 01112238999999999999999998654 3345666777777665422 2345677889999999999998
Q ss_pred ccCCe-EEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941 165 YPTPK-ITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 165 ~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
.|.+. +.|++.++..+.. ........+..|.|.++..+|.|.|+|.+.|..+...+..+.|.|.
T Consensus 116 ~~~~~~v~W~~~~~~~~~~------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~ 180 (289)
T 3ejj_X 116 PALKDSVSLMREGGRQVLR------KTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVN 180 (289)
T ss_dssp GGGGGSEEEEEGGGEECCT------TCCEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred CCcceEEEEEecCCeecCC------CccEEECCCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEE
Confidence 77664 9998755544421 1222334456799999999999999999995443355778888887
No 129
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.87 E-value=3.8e-20 Score=137.21 Aligned_cols=185 Identities=16% Similarity=0.150 Sum_probs=118.2
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
.+|.|...+. ..+.+|++++|.|.+.. +.+.+.|+|++..+.......
T Consensus 6 ~kP~i~~~P~-~~V~~G~~VtL~C~~~~---------------------------~~~~~~W~k~g~~~~~~~~~~---- 53 (257)
T 1b6u_A 6 RKPSLLAHPG-PLVKSEETVILQCWSDV---------------------------RFQHFLLHREGKFKDTLHLIG---- 53 (257)
T ss_dssp CCCEECCBSC-SEEESSCCEEEEEEESS---------------------------CCSEEEEEEESTTCEEEEEEC----
T ss_pred CCCEEEEcCC-CEecCCCCEEEEEecCC---------------------------CCcEEEEEECCCCCCcceeee----
Confidence 4677776665 67889999999999852 134699999876542211000
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC------CcceeeEEEEEcC---CcccccccCCceeecCCCcEE
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP------MTKQMAFLEVVIP---PDISSEETSGDMMVPEGGSAK 157 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~------~~~~~~~l~v~~~---~~~~~~~~~~~~~~~~g~~~~ 157 (238)
+. ........|.|.+++.+|+|.|+|.+.+.. ..+..+.|.|... |.+... + ...+.+|++++
T Consensus 54 --~~---~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~--p-~~~V~~G~~vt 125 (257)
T 1b6u_A 54 --EH---HDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQ--P-GPTVLAGESVT 125 (257)
T ss_dssp --BC---CTTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCCCCEEEEEECSSCCCEEECS--S-CTTCBTTCEEE
T ss_pred --ec---cCCCceEEEEeecCCcccCEEEEEeEeccCCCccccccCCCEEEecccCCCCcceEcc--C-CCccCCCCEEE
Confidence 00 011123489999999999999999996421 1234556777643 233221 2 23578999999
Q ss_pred EEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC----CCCccceEEEEE
Q psy7941 158 LVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV----PPTVSKRLMLHV 233 (238)
Q Consensus 158 l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~----g~~~~~~~~l~V 233 (238)
|.|.+.+. .+.+.|++++. .+........ .........|.|.++. |+|.|+|.+.+.. ....+..+.|.|
T Consensus 126 L~C~~~~~-~~~~~w~k~g~-~~~~~~~~~~--~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V 199 (257)
T 1b6u_A 126 LSCSSRSS-YDMYHLSREGE-AHERRFSAGP--KVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSV 199 (257)
T ss_dssp EEEECSSC-CSEEEEEETTS-SCEECCBCBC--CSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECC
T ss_pred EEEeCCCC-CcEEEEEECCc-ccCccccccc--ccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEE
Confidence 99998775 46999999543 3322110000 0000124578999998 9999999999753 234467788888
Q ss_pred Eeec
Q psy7941 234 HCTY 237 (238)
Q Consensus 234 ~~~p 237 (238)
..+|
T Consensus 200 ~g~p 203 (257)
T 1b6u_A 200 TGNP 203 (257)
T ss_dssp BCCC
T ss_pred eccC
Confidence 7664
No 130
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=99.87 E-value=3.9e-20 Score=137.41 Aligned_cols=187 Identities=18% Similarity=0.296 Sum_probs=120.2
Q ss_pred cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeee--eee
Q psy7941 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAI--HEH 82 (238)
Q Consensus 9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~--~~~ 82 (238)
..+...+..+.+.+|+++.|.|.+... |.+.+.|+|.... . .... ...
T Consensus 4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~--------------------------~~~~v~W~r~~~~~~~~~~~~~~~~~~ 57 (256)
T 3tf7_C 4 QSVTQPDARVTVSEGASLQLRCKYSYS--------------------------ATPYLFWYVQYPRQGPQMLLKYYSGDP 57 (256)
T ss_dssp CEEECSCSEEEEETTSCEEECCEEECS--------------------------SCCEEEEEEECTTSCCEEEEEECSSCS
T ss_pred cEEEecCceEEecCCCeEEEEEEeCCC--------------------------CCceEEEEEECCCCCeEEEEEEccCCc
Confidence 456778889999999999999999643 3567999985321 1 1100 111
Q ss_pred EeecCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCCC-----cceeeEEEEEcC------------------Cc
Q psy7941 83 VITNNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNPM-----TKQMAFLEVVIP------------------PD 138 (238)
Q Consensus 83 ~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-----~~~~~~l~v~~~------------------~~ 138 (238)
.....+|+.+.. .....++|.|.+++.+|+|.|+|.+.+... ....+.|.|... ..
T Consensus 58 ~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~ 137 (256)
T 3tf7_C 58 VVQGVNGFEAEFSKSDSSFHLRKASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSE 137 (256)
T ss_dssp EEECSTTCEEEEETTTTEEEEEESSCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------
T ss_pred ccccCCCeEEEEcCCCCEEEEEECCCCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCc
Confidence 123356777653 344677999999999999999999976432 122345666641 11
Q ss_pred ccccccCCceeecCCCcEEEEEEEccccCCeEEEEeCCC-e-e-eEeec-CC------CCCcceE----EEeeceEEEEE
Q psy7941 139 ISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN-K-E-IIVRS-NP------PSSQKVF----SVESEVLSLTK 204 (238)
Q Consensus 139 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~-~-~-~~~~~-~~------~~~~~~~----~~~~~~l~i~~ 204 (238)
+.+...+....+.+|+.+.|.|.+.+. .+.+.|++... . . ..... .. .....+. ......|.|.+
T Consensus 138 ~~v~~~p~~~~v~~G~~v~L~C~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~ 216 (256)
T 3tf7_C 138 AAVTQSPRNKVTVTGENVTLSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLES 216 (256)
T ss_dssp CCEEESCSEEEEETTCCEEECEEECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESS
T ss_pred cEEEecCCEEEEeCCCcEEEEEEcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECC
Confidence 222233455677899999999999876 67999998321 1 1 11100 00 0000111 11234799999
Q ss_pred eecCCCeEEEEEeeeCCC
Q psy7941 205 VTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 205 ~~~~d~G~y~C~~~n~~g 222 (238)
+..+|+|.|+|.|.|..|
T Consensus 217 v~~~DsG~Y~C~a~n~~g 234 (256)
T 3tf7_C 217 ASPSQTSLYFCASSDAPG 234 (256)
T ss_dssp CCGGGCEEEEEEEEEETT
T ss_pred CCHHHCEEEEEEecCCCC
Confidence 999999999999999866
No 131
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=99.87 E-value=1.4e-20 Score=140.00 Aligned_cols=185 Identities=16% Similarity=0.160 Sum_probs=118.3
Q ss_pred EEecCCEEEEeEEecCCCce-eeeee---------eeeeeecCCeEEeccC----CCCceEEEEeCCceeeeeeeeeEee
Q psy7941 20 IAQGRDAIFTCVVNNLGGHR-VSSSV---------TDTHVNTGGSIVFPTD----SSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 20 v~~g~~~~l~C~~~~~~~~~-~~~~~---------~~~~~~~~~~~~~~~~----~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
+...|.+.|.|.+.+..+.. +...+ ....+..|+.+.+.|. .|.+.+.|++++..+....
T Consensus 55 ~~~~d~G~Y~C~~~~~~~s~~~~l~v~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~------ 128 (262)
T 3rjd_A 55 ASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFH------ 128 (262)
T ss_dssp CCGGGCEEEEEEESSSCCCCCEEEEEECSSEEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEE------
T ss_pred CCcccCeEEEEEEecCCccccEEEEEeccceEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccccC------
Confidence 45667778888876643221 11111 1112445666655543 4677999999776542110
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG 164 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~ 164 (238)
. ...|.|.+++.+|+|.|+|.+.+... ....+.+.|...+............+..|+.+.|.|.+.+
T Consensus 129 -------~-----~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~~~~~~~g~~~~l~C~~~~ 196 (262)
T 3rjd_A 129 -------W-----NSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKL 196 (262)
T ss_dssp -------E-----CCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCCEEEESSCSSEETTCCEEEEEECCC
T ss_pred -------C-----CCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCCCCCeEeecCceeecCCCeEEEEeEccc
Confidence 0 11899999999999999999987642 3344567776431111111122445788999999999999
Q ss_pred ccC-C----eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCc--cceEEEEEE
Q psy7941 165 YPT-P----KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTV--SKRLMLHVH 234 (238)
Q Consensus 165 ~p~-~----~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~--~~~~~l~V~ 234 (238)
.|. | .+.|++ ++..+.. ......|.|.++..+|.|.|+|.|.|..|... +..+.|.|+
T Consensus 197 ~p~~p~~~~~~~w~~-~~~~~~~-----------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~~~s~~~~l~V~ 261 (262)
T 3rjd_A 197 LLQRPGLQLYFSFYM-GSKTLRG-----------RNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVL 261 (262)
T ss_dssp CCC-----EEEEEEE-TTEEEEE-----------EESCCEEEESSCCGGGCEEEEEEEEETTSSCEEECCCEEECEE
T ss_pred CCCCCCccEEEEEEe-CCcEecc-----------cCCCceEEEEEechhhCeEEEEEEEcccCceEEecCCeEEEEe
Confidence 875 5 378888 5544432 12345799999999999999999999999532 445555553
No 132
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.87 E-value=1e-20 Score=140.27 Aligned_cols=190 Identities=19% Similarity=0.245 Sum_probs=111.5
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC-ceeeee-ee--e-e
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD-TKAVLA-IH--E-H 82 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~-~~~~~~-~~--~-~ 82 (238)
+|.+...+..+.+.+|+++.|.|.+...... ....+.+.|+|++ +..... .. . .
T Consensus 38 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~---------------------~~~~~~v~W~k~~~g~~~~~~~~~~~~~ 96 (254)
T 2c1o_A 38 ELVMTQSPLTLSVTIGQPASISCKSSQSLLY---------------------SNGKTYLNWLLQRPGQSPKRLIYLVSKL 96 (254)
T ss_dssp CCCEEEECSEEEECTTSCEEEEEEESSCCBC---------------------SSSCBCEEEEEECTTSCCEEEEETTTEE
T ss_pred ceeEEeCCceEEecCCCcEEEEeeccCcccc---------------------cCCCCceEEEEeCCCCCceEEEEecccc
Confidence 4555556667777777777777776432100 0003679999853 221110 00 0 0
Q ss_pred EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEc---CCcccccccCCceeecCCCcEE
Q psy7941 83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVI---PPDISSEETSGDMMVPEGGSAK 157 (238)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~---~~~~~~~~~~~~~~~~~g~~~~ 157 (238)
......|+.+.. ....++|.|.+++.+|+|.|+|.+.+.... ...+.+.|.. +|.+.... .......|+.+.
T Consensus 97 ~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~--~~~~~~~g~~v~ 173 (254)
T 2c1o_A 97 DSGDPDRFTGSG-SGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFP--PSSEQLTSGGAS 173 (254)
T ss_dssp CTTCCTTEEEEE-ETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEEC--CCHHHHHTTEEE
T ss_pred CCCccceEEEec-CCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeec--CChhhccCCcEE
Confidence 011235776654 345669999999999999999999765332 1223566653 33333211 111223477999
Q ss_pred EEEEEcc-ccC-CeEEEEeCCCeeeEee----cCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 158 LVCKAKG-YPT-PKITWRREDNKEIIVR----SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 158 l~C~~~~-~p~-~~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
|.|.+.| .|. +.+.|+++ +..+... ..............+.|.|..+..+|.|.|+|.|.|...
T Consensus 174 l~C~~~g~~p~~~~v~W~k~-g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~ 243 (254)
T 2c1o_A 174 VVCFLNNFYPKDINVKWKID-GSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS 243 (254)
T ss_dssp EEEEEEEEBSSCCEEEEEES-SSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTC
T ss_pred EEEEEecccCCCcEEEEEEC-CCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCC
Confidence 9999988 444 36999994 4443221 000000010111234799999999999999999999876
No 133
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=99.87 E-value=8.7e-21 Score=140.57 Aligned_cols=190 Identities=20% Similarity=0.247 Sum_probs=117.0
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-eee---eeee-ee
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-KAV---LAIH-EH 82 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~~---~~~~-~~ 82 (238)
.+.+...+..+.+.+|+++.|.|.+.+.... ....+.+.|+|++. ... .... ..
T Consensus 34 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~---------------------~~~~~~v~W~k~~~~~~~~~~~~~~~~~ 92 (252)
T 3bkj_L 34 DVLMTQTPLSLPVNLGEQASISCRSSQSIVH---------------------SNGHTYLEWYLQRPGQSPKLLIYQVSTR 92 (252)
T ss_dssp CCCEEEECSEEEECTTSCEEEEEEESSCCBC---------------------TTSCBCEEEEEECTTSCCEEEEETTTEE
T ss_pred ccEEEeCCceEEEeCCCcEEEEEEcCCCccc---------------------cCCCCcEEEEEECCCCCcEEEEEcCCcc
Confidence 4556677888999999999999998643200 00135699999652 111 1000 00
Q ss_pred EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEc---CCcccccccCCceeecCCCcEE
Q psy7941 83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVI---PPDISSEETSGDMMVPEGGSAK 157 (238)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~---~~~~~~~~~~~~~~~~~g~~~~ 157 (238)
.....+|+.+.. ....++|.|.+++.+|+|.|+|.+.+.... ...+.+.|.. +|.+... .....+..|+.+.
T Consensus 93 ~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~--~~~~~~~~g~~v~ 169 (252)
T 3bkj_L 93 FSGVPDRFSGSG-SGTDFTLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIF--PPSSEQLTSGGAS 169 (252)
T ss_dssp CTTCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEE--CCCHHHHHHTEEE
T ss_pred cCCcCCceEEEc-cCCEEEEEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEe--CCChhhcCCCcEE
Confidence 011245776655 345679999999999999999999765321 1234566653 2333221 1111233688999
Q ss_pred EEEEEcc-ccCC-eEEEEeCCCeeeEee----cCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 158 LVCKAKG-YPTP-KITWRREDNKEIIVR----SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 158 l~C~~~~-~p~~-~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
|.|.+.| .|.+ .+.|++ ++..+... ..............+.|.|..+..+|.|.|+|.|.|...
T Consensus 170 L~C~~~g~~p~~~~v~W~k-~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~ 239 (252)
T 3bkj_L 170 VVCFLNNFYPKDINVKWKI-DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS 239 (252)
T ss_dssp EEEEEEEEBSSCCEEEEEE-TTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTC
T ss_pred EEEEEeeEeCCCcEEEEEE-CCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCC
Confidence 9999988 5554 799999 55543211 000000111112234689999999999999999999775
No 134
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=99.87 E-value=9.8e-21 Score=157.92 Aligned_cols=172 Identities=17% Similarity=0.278 Sum_probs=121.4
Q ss_pred eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEE
Q psy7941 12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLS 91 (238)
Q Consensus 12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 91 (238)
...+....+.+|+.+.|.|.+. +.|.+.++|++++..+.. .
T Consensus 385 ~~~~~~~~~~~g~~~~l~C~~~--------------------------g~p~~~i~W~~~g~~~~~---------~---- 425 (642)
T 1e07_A 385 TISPSYTYYRPGVNLSLSCHAA--------------------------SNPPAQYSWLIDGNIQQH---------T---- 425 (642)
T ss_pred eecCCceEecCCCcEEEEEEcC--------------------------ccCCCeEEEEECCEEcCC---------C----
Confidence 4455667788999999999984 345778999997654310 1
Q ss_pred EEEcCCCeEEEEEcccCcccCeEEEEEEecCC-Cccee--eEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCC
Q psy7941 92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQM--AFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP 168 (238)
Q Consensus 92 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~--~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~ 168 (238)
..|.|.+++.+|+|.|+|.+.|.. ..... ..+.|..++............+.+|+.+.|.|.+.+ |.+
T Consensus 426 --------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~~-~~~ 496 (642)
T 1e07_A 426 --------QELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEA-QNT 496 (642)
T ss_pred --------ceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccCCCceEecCCceeecCCCeEEEEEECCC-CCc
Confidence 179999999999999999998753 23333 334444322111111233456789999999999984 788
Q ss_pred eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 169 KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 169 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
.+.|++ ++..+.... .......+..|.|.++..+|.|.|+|.|.|..|...+..+.|.|..+|
T Consensus 497 ~i~W~~-~g~~l~~~~-----~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p 559 (642)
T 1e07_A 497 TYLWWV-NGQSLPVSP-----RLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGP 559 (642)
T ss_pred EEEEEE-CCEeCCCCC-----cEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCC
Confidence 999999 554443211 111222345899999999999999999999999766678889998655
No 135
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=99.87 E-value=2.3e-21 Score=140.97 Aligned_cols=179 Identities=17% Similarity=0.313 Sum_probs=112.5
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-ee---eeeee------eeEe
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-KA---VLAIH------EHVI 84 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~---~~~~~------~~~~ 84 (238)
+..+.+.+|+++.|.|.+..... +.+.+.|+|+.. .. ..... ....
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~ 62 (222)
T 1q9r_B 7 SGGGLVQSGGSLRLSCATSGFTF------------------------TDYYMSWVRQPPGKALEWLGFIRNKANGYTTEY 62 (222)
T ss_dssp ECCCEECTTCCEEEEEEEESSCG------------------------GGSCEEEEEECTTSCCEEEEEECCGGGTTCEEE
T ss_pred CCceeEcCCCEEEEEEEecCccC------------------------CCCcEEEEEECCCCCcEEEEEEccCCccccccc
Confidence 45678999999999999974210 134699999642 11 11100 0000
Q ss_pred --ecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCC------cceeeEEEEEc----CCcccccccCCceeec
Q psy7941 85 --TNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPM------TKQMAFLEVVI----PPDISSEETSGDMMVP 151 (238)
Q Consensus 85 --~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~------~~~~~~l~v~~----~~~~~~~~~~~~~~~~ 151 (238)
...+|+.+.... ...++|.|.+++.+|+|.|.|.+.+... ....+.|.|.. +|.+.... ....+.
T Consensus 63 ~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~--~~~~~~ 140 (222)
T 1q9r_B 63 SPSVKGRFTISRDNSQSILYLQMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLA--PGSAAQ 140 (222)
T ss_dssp CTTTBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEEC--CCSCCC
T ss_pred CcccCCceEEEEECCCCeEEEEECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEcc--cccccc
Confidence 124677776543 4577999999999999999999976531 22345677764 22222211 112355
Q ss_pred CCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecC-CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 152 EGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSN-PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 152 ~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
.|+.+.|.|.+.| +|.| .+.|+++ +..+..... ...... .....+.|.|..+..+| |.|+|.|.|..|
T Consensus 141 ~g~~v~L~C~~~g~~P~p~~v~W~~~-g~~~~~~~~~~~~~~~-~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~ 211 (222)
T 1q9r_B 141 TNSMVTLGCLVKGYFPEPVTVTWNSG-SLSSGVHTFPAVLQSD-LYTLSSSVTVPSSTWPS-ETVTCNVAHPAS 211 (222)
T ss_dssp CSSEEEEEEEEEEEBSSCCEEEEGGG-TBCTTEEEEEEEEETT-EEEEEEEEEEETTTTTT-SCCEEEEEEGGG
T ss_pred CCCcEEEEEEEccEECCCCEEEEecC-CeEcceEeccccccCC-cEEEEEEEEECchhcCC-CeEEEEEEccCC
Confidence 7999999999998 4888 9999994 433211000 000011 11223468888888889 999999999988
No 136
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=99.87 E-value=1.5e-20 Score=135.99 Aligned_cols=183 Identities=20% Similarity=0.253 Sum_probs=112.4
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--eeeeeee---eeEee
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KAVLAIH---EHVIT 85 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~~~~~~---~~~~~ 85 (238)
+.. |..+.+.+|+++.|.|.+..... +.+.+.|+|++. ....... .....
T Consensus 4 v~q-p~~~~v~~G~~v~L~C~v~~~~~------------------------~~~~v~W~k~~~~~~~~~~~~~~~~~~~~ 58 (216)
T 2xzc_L 4 LTQ-PPSVSAAPGQKVTISCSGSSSNI------------------------GNNYVSWYQQLPGTAPKLLIYDNNKRPSG 58 (216)
T ss_dssp BBC-CSEEEECTTCCEEEEEECCTTTG------------------------GGSCCEEEEECTTSCCEEEEBTTTBCCTT
T ss_pred EEC-CCcEEecCCCeEEEEEEeecCCC------------------------CCCeEEEEEeCCCCCcEEEEEecCccCCC
Confidence 344 67789999999999999532110 135699999642 1110000 00011
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC---cceeeEEEEEc---CCcccccccCCceeecCCCcEEEE
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM---TKQMAFLEVVI---PPDISSEETSGDMMVPEGGSAKLV 159 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l~v~~---~~~~~~~~~~~~~~~~~g~~~~l~ 159 (238)
...|+.... ....++|.|.+++.+|+|.|+|.+.+... ....+.|.|.. +|.+.... +. .....|+.+.|.
T Consensus 59 ~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~-~~-~~~~~g~~v~L~ 135 (216)
T 2xzc_L 59 IPDRFSGSK-SGTSATLGITGLQTGDEADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFP-PS-DEQLKSGTASVV 135 (216)
T ss_dssp CCTTEEEEE-ETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEEC-CC-HHHHHTTEEEEE
T ss_pred CCCceEEec-cCCEEEEEECCCCcccCEEEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeC-CC-hhhccCCcEEEE
Confidence 235676654 34566999999999999999999987543 12234566653 33332211 11 112358899999
Q ss_pred EEEcc-ccCC-eEEEEeCCCeeeEee----cCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 160 CKAKG-YPTP-KITWRREDNKEIIVR----SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 160 C~~~~-~p~~-~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
|.+.| .|.+ .+.|++ ++..+... ..............+.|.|..+..+|.|.|+|.|.|...
T Consensus 136 C~~~g~~P~~~~v~W~k-~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~ 203 (216)
T 2xzc_L 136 CLLNNFYPREAKVQWKV-DNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGL 203 (216)
T ss_dssp EEEEEEBSSCCEEEEEE-TTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTC
T ss_pred EEEEeEcCCceEEEEEE-CCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCC
Confidence 99988 5665 899999 55543221 000000111112233688999999999999999999875
No 137
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.86 E-value=1.2e-22 Score=156.48 Aligned_cols=186 Identities=20% Similarity=0.307 Sum_probs=64.2
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
.++.+...+..+.+.+|+++.|.|.+... .|.+.+.|++++..+..
T Consensus 7 ~p~p~~~~~~~~~v~~G~~v~l~C~~~~~-------------------------~p~~~v~W~k~g~~~~~--------- 52 (334)
T 1ry7_B 7 VPGPEPGQQEQLVFGSGDAVELSCPPPGG-------------------------GPMGPTVWVKDGTGLVP--------- 52 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCcCcEEEecCCcEEEEeeCCCC-------------------------CCCcceEEEECCeeCCC---------
Confidence 33444455888899999999999998632 13457999998765321
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCC----------------------cccccc-
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPP----------------------DISSEE- 143 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~----------------------~~~~~~- 143 (238)
..++.... .+|.|.+++.+|+|.|+|.+.+.+.......+.|...+ .+....
T Consensus 53 ~~~~~~~~-----~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~ 127 (334)
T 1ry7_B 53 SERVLVGP-----QRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPER 127 (334)
T ss_dssp -----------------------------------------------------------------------CCCCSCCTT
T ss_pred cccEEecc-----ceEEEeecccccCEEEEEEEEeCCeEEEEEEEEEeccCccccccccccccccccccCCCCEEecccc
Confidence 22333322 28999999999999999999776333444455555332 221110
Q ss_pred -cCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 144 -TSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 144 -~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
......+.+|+.+.|.|.+.|.|.+.+.|++ ++..+..... ............|.|.++..+|.|.|+|.+.|..|
T Consensus 128 ~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~-~~~~~~~~~~--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 204 (334)
T 1ry7_B 128 MDKKLLAVPAANTVRFRCPAAGNPTPSISWLK-NGREFRGEHR--IGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFG 204 (334)
T ss_dssp CCCCEEEEETTCCEEEECCCCCSSCCEEECCB-TTBCCCTTSS--TTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTE
T ss_pred ccceeEEecCCCcEEEEEEccCCCCCeEEEEE-CCEECccccc--ccceecccceEEEEECCCCcccCEEEEEEEEeCCC
Confidence 1123567889999999999999999999999 4444322111 00111122345799999999999999999999998
Q ss_pred CCccceEEEEEEe
Q psy7941 223 PTVSKRLMLHVHC 235 (238)
Q Consensus 223 ~~~~~~~~l~V~~ 235 (238)
. .+..+.|.|..
T Consensus 205 ~-~~~~~~l~V~~ 216 (334)
T 1ry7_B 205 S-IRQTYTLDVLE 216 (334)
T ss_dssp E-EEEEEEEEEEC
T ss_pred C-EEEEEEEEEec
Confidence 4 47778888875
No 138
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=99.86 E-value=3.7e-21 Score=152.72 Aligned_cols=181 Identities=12% Similarity=0.181 Sum_probs=105.8
Q ss_pred cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCc
Q psy7941 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNA 88 (238)
Q Consensus 9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ 88 (238)
+.++..+..+.|.+|+++.|.|.+.. .|.+.+.|++++..+... .
T Consensus 49 ~~~~~~~~~v~V~~G~~v~L~C~v~g--------------------------~P~p~i~W~~~~~~l~~~---------~ 93 (423)
T 3qs7_E 49 SGTVYEAAAVEVDVSASITLQVLVDA--------------------------PGNISCLWVFKHSSLNCQ---------P 93 (423)
T ss_dssp -------CEEEECSSCCEEEEEECSC--------------------------CSSCEEEEEETTEEECCC---------C
T ss_pred CcceeccccEEEecCCcEEEEEEEEc--------------------------CCCCeEEEEECCCccCcc---------c
Confidence 45556667899999999999999853 457789999987653211 0
Q ss_pred cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccC
Q psy7941 89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPT 167 (238)
Q Consensus 89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~ 167 (238)
.+ ........+|.|.+++.+|+|.|+|.+.|... ....+.|.|..+|.+.. ..+ ..+..|+.+.|.|.+.|.|.
T Consensus 94 ~~--~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~-~~p--~~~~~~~~~~L~C~a~G~P~ 168 (423)
T 3qs7_E 94 HF--DLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTL-RRP--YFRKMENQDALVCISESVPE 168 (423)
T ss_dssp BC-------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC-----CE-EEE--EEEECSSSSCEEEEEEESSC
T ss_pred ee--ccccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEecCccccc-cCC--cEeccCCceEEEEEEeeecC
Confidence 11 01111223799999999999999999987633 33345566654444321 111 23455778899999999999
Q ss_pred CeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 168 PKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 168 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
|.++|++++. ....... ..... ....... +...|.|.|+|.|.|..|...+..+.|.|..+|
T Consensus 169 P~i~W~k~~~-~~~~~~~-~~~~~-~~~~~~~-----l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p 230 (423)
T 3qs7_E 169 PIVEWVLCDS-QGESCKE-ESPAV-VKKEEKV-----LHELFGTDIRCCARNELGRECTRLFTIDLNQTP 230 (423)
T ss_dssp CEEEEEEC---------------C-EEECCSE-----ECCCCSSCEEEEEECSSCEEEEECEEEESSSCC
T ss_pred CeEEEEECCC-CCccccc-ccccc-ccccceE-----EecccCeEEEEEEEcCCCCcceeeEEEEEecCC
Confidence 9999999544 2211000 00000 0111111 257899999999999999654555777776544
No 139
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=99.86 E-value=5.5e-21 Score=139.49 Aligned_cols=195 Identities=16% Similarity=0.237 Sum_probs=114.7
Q ss_pred ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-eee---eeee----eeEe
Q psy7941 13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-KAV---LAIH----EHVI 84 (238)
Q Consensus 13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~~---~~~~----~~~~ 84 (238)
..+..+.+.+|++++|.|.+..... ..+.+.|+|++. ... .... ....
T Consensus 5 ~qp~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~ 60 (227)
T 1mju_H 5 QQPGAELVKPGASVKLSCKASGYTF------------------------TNYWINWVKQRPGQGLEWIGNIYPGSSYTHY 60 (227)
T ss_dssp ECCSEEEECTTCCEEEEEEEESSCG------------------------GGSCEEEEEECTTSCEEEEEEEETTTTEEEE
T ss_pred cCCCCeEEcCCCCEEEEEEecCCcc------------------------ccceEEEEEeCCCCCcEEEEEEeccCCceee
Confidence 3456778999999999999974311 034699999642 211 1110 0001
Q ss_pred --ecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEc----CCcccccccCCceeecCCCc
Q psy7941 85 --TNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVI----PPDISSEETSGDMMVPEGGS 155 (238)
Q Consensus 85 --~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~----~~~~~~~~~~~~~~~~~g~~ 155 (238)
...+|+.+.... ...++|.|.+++.+|+|.|+|.+.+... ....+.|.|.. +|.+.... ....+..|+.
T Consensus 61 ~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~--~~~~~~~g~~ 138 (227)
T 1mju_H 61 NEKFKNKATLTVDTSSSTAYMQLSSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLA--PVCGDTSGSS 138 (227)
T ss_dssp CGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEEC--CCC------C
T ss_pred CCccCCcEEEEEeCCCCeEEEEECCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEec--CCccccCCCc
Confidence 124688776542 4577999999999999999999976431 12234677764 22222211 1123567999
Q ss_pred EEEEEEEccc-cCC-eEEEEeCCCeeeEeecCCCC-CcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEE
Q psy7941 156 AKLVCKAKGY-PTP-KITWRREDNKEIIVRSNPPS-SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH 232 (238)
Q Consensus 156 ~~l~C~~~~~-p~~-~~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~ 232 (238)
+.|.|.+.|. |.+ .+.|++++ ..+........ ... .....+.|.|..+..+| |.|+|.|.|..+ .....+.+.
T Consensus 139 v~L~C~~~g~~P~p~~v~W~~~g-~~~~~~~~~~~~~~g-~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~-~~~~~~~~~ 214 (227)
T 1mju_H 139 VTLGCLVKGYFPEPVTLTWNSGS-LSSGVHTFPAVLQSD-LYTLSSSVTVTSSTWPS-QSITCNVAHPAS-STKVDKKIE 214 (227)
T ss_dssp EEEEEEEEEEBSSCCEEEEGGGT-BCTTEEECCCEEETT-EEEEEEEEEECTTTTTT-SCCEEEEEEGGG-TEEEEEECC
T ss_pred EEEEEEeecEeCCCeEEEEecCC-CcCCcEECCceecCC-eEEEEEEEEEchhhcCC-CeEEEEEEECCC-CcceEEEeC
Confidence 9999999884 777 99999954 33211110000 001 11233468888777777 999999999776 324455555
Q ss_pred EEeec
Q psy7941 233 VHCTY 237 (238)
Q Consensus 233 V~~~p 237 (238)
+..+|
T Consensus 215 ~~~~p 219 (227)
T 1mju_H 215 PRGPT 219 (227)
T ss_dssp CCCC-
T ss_pred CCCCC
Confidence 55555
No 140
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=99.86 E-value=8.7e-20 Score=134.73 Aligned_cols=189 Identities=17% Similarity=0.271 Sum_probs=116.7
Q ss_pred cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e-ee-eeee--eeE
Q psy7941 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K-AV-LAIH--EHV 83 (238)
Q Consensus 9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~-~~-~~~~--~~~ 83 (238)
..+...+..+.+.+|+++.|.|.+...... ....+.+.|+|+.. . .. .... ...
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~---------------------~~~~~~v~W~~~~~~~~~~~~~~~~~~~~ 60 (247)
T 1svz_A 2 ILMTQTPLYLPVSLGDQASISCRSSQTIVH---------------------NNGNTYLEWYLQKPGQSPQLLIYKVSNRF 60 (247)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEESSCCBC---------------------TTSCBCEEEEEECTTSCEEEEEETTTEEC
T ss_pred CcEEecCCeEEecCCCCEEEEEeCCCcccc---------------------cCCCceEEEEEECCCCCceEEEEEecccC
Confidence 356677888999999999999999642200 00035699999542 1 11 1000 000
Q ss_pred eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEcCC------------cccccccCCcee
Q psy7941 84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIPP------------DISSEETSGDMM 149 (238)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~------------~~~~~~~~~~~~ 149 (238)
.....|+.+.. ....++|.|.+++.+|+|.|+|.+.+... ....+.|.|..++ .+... .+....
T Consensus 61 ~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 138 (247)
T 1svz_A 61 SGVPDRFSGSG-SGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQ-QSGPEL 138 (247)
T ss_dssp TTCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEE-ECCCEE
T ss_pred CCCCCcEEecc-CCCEEEEEECCCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEe-CCCcee
Confidence 01245777654 34567999999999999999999976532 1234567776543 11221 123345
Q ss_pred ecCCCcEEEEEEEcccc--CCeEEEEeCC-Ceee--EeecCC---------CCCcceEEEe-----eceEEEEEeecCCC
Q psy7941 150 VPEGGSAKLVCKAKGYP--TPKITWRRED-NKEI--IVRSNP---------PSSQKVFSVE-----SEVLSLTKVTRSEM 210 (238)
Q Consensus 150 ~~~g~~~~l~C~~~~~p--~~~~~W~~~~-~~~~--~~~~~~---------~~~~~~~~~~-----~~~l~i~~~~~~d~ 210 (238)
+.+|+.+.|.|.+.+.+ .+.+.|++++ +... ...... ....+..... ...|.|.+++.+|+
T Consensus 139 v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~Ds 218 (247)
T 1svz_A 139 KKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDT 218 (247)
T ss_dssp ECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred ecCCCcEEEEEEEcCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHC
Confidence 88999999999998864 5699999853 2111 110000 0011211111 24799999999999
Q ss_pred eEEEEEeeeC
Q psy7941 211 GAYQCIAANG 220 (238)
Q Consensus 211 G~y~C~~~n~ 220 (238)
|.|+|.+.|.
T Consensus 219 G~Y~C~a~n~ 228 (247)
T 1svz_A 219 ATYFCVRDRH 228 (247)
T ss_dssp EEEEEEEEEG
T ss_pred EEEEEEEecc
Confidence 9999999985
No 141
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=99.86 E-value=1.8e-20 Score=138.29 Aligned_cols=184 Identities=17% Similarity=0.259 Sum_probs=116.7
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeee---ee
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIH---EH 82 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~---~~ 82 (238)
.+...+..+.+.+|+++.|.|.+... +.+.+.|+|.... ...... ..
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~--------------------------~~~~v~W~r~~~~~~~~~~~~~~~~~~~ 56 (246)
T 4dzb_B 3 VVSQHPSWVISKSGTSVKIECRSLDF--------------------------QATTMFWYRQFPKQSLMLMATSNEGSKA 56 (246)
T ss_dssp CEEEECSEEEEETTSCEEEEEEESSS--------------------------CCCSEEEEEECTTSCCEEEEEECTTSCC
T ss_pred ccEECCcEEEEeCCCcEEEEeEecCC--------------------------CceEEEEEEECCCCCcEEEEEEccCCCc
Confidence 46677888999999999999998642 3567999994211 111111 00
Q ss_pred Eee---cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-----cceeeEEEEEc------CCcccccccCCce
Q psy7941 83 VIT---NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-----TKQMAFLEVVI------PPDISSEETSGDM 148 (238)
Q Consensus 83 ~~~---~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-----~~~~~~l~v~~------~~~~~~~~~~~~~ 148 (238)
... ..+|+.+.......++|.|.+++.+|+|.|+|.+.+... ....+.+.|.. +|.+... .+...
T Consensus 57 ~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~-~~~~~ 135 (246)
T 4dzb_B 57 TYEQGVEKDKFLINHASLTLSTLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVF-EPSEA 135 (246)
T ss_dssp EECTTCCGGGEEEEEEETTEEEEEECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEE-CCCHH
T ss_pred eecCcccCCcEEEEecCCCEEEEEECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEee-cCCch
Confidence 011 126777766445678999999999999999999975321 12344577764 2332211 12223
Q ss_pred eecCCCcEEEEEEEccccCC--eEEEEeCCCeeeEeecCCCC---------CcceEEEeeceEEEEEeecCC-CeEEEEE
Q psy7941 149 MVPEGGSAKLVCKAKGYPTP--KITWRREDNKEIIVRSNPPS---------SQKVFSVESEVLSLTKVTRSE-MGAYQCI 216 (238)
Q Consensus 149 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~i~~~~~~d-~G~y~C~ 216 (238)
.+..|+.+.|.|.+.|.|++ .+.|++ ++..+........ .... ......|.|.....+| .|.|+|.
T Consensus 136 ~~~~g~~v~L~C~~~g~~p~~~~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~g~-~~~~s~l~i~~~~~~d~~g~YtC~ 213 (246)
T 4dzb_B 136 EISHTQKATLVCLATGFYPDHVELSWWV-NGKEVHSGVCTDPQPLKEQPALNDSR-YALSSRLRVSATFWQNPRNHFRCQ 213 (246)
T ss_dssp HHHHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEECTTEEECSSCEESSTTSTTCC-EEEEEEEEEEHHHHTCTTCEEEEE
T ss_pred hccCCCcEEEEEEEccCcCCceEEEEEE-CCEECCCCcccccccccccccCCCCC-EEEEEEEEECHHHhccCCCeEEEE
Confidence 35568999999999986554 899999 5555432111000 0111 1112357788787788 9999999
Q ss_pred eeeCCC
Q psy7941 217 AANGVP 222 (238)
Q Consensus 217 ~~n~~g 222 (238)
|.|...
T Consensus 214 v~~~~~ 219 (246)
T 4dzb_B 214 VQFYGL 219 (246)
T ss_dssp EEECCB
T ss_pred EEecCC
Confidence 999875
No 142
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=99.86 E-value=1.3e-21 Score=138.43 Aligned_cols=144 Identities=19% Similarity=0.294 Sum_probs=96.5
Q ss_pred EEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCC
Q psy7941 19 TIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDAN 98 (238)
Q Consensus 19 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (238)
.+..|+++.|.|.+.. ++.+.|+|++..+... ..
T Consensus 10 v~~~G~~v~L~C~~~~----------------------------~~~i~W~k~g~~l~~~--------~~---------- 43 (186)
T 1jbj_A 10 VSISGTSVELTCPLDS----------------------------DENLKWEKNGQELPQK--------HD---------- 43 (186)
T ss_dssp EEEETTEEEEECSSCC----------------------------CTTCEEEETTEEECSC--------CC----------
T ss_pred EEeCCcEEEEEEeCCC----------------------------CCceEEEECCEECCCC--------CC----------
Confidence 4578999999999852 1239999987654211 11
Q ss_pred eEEEEEcc-cCcccCeEEEEEEecCCCc-ceeeEEEEEc--CCccc------------------ccccCCc---eeecCC
Q psy7941 99 TWTLNIRS-VRREDRGYYMCQVNTNPMT-KQMAFLEVVI--PPDIS------------------SEETSGD---MMVPEG 153 (238)
Q Consensus 99 ~~~L~i~~-~~~~d~G~Y~C~~~~~~~~-~~~~~l~v~~--~~~~~------------------~~~~~~~---~~~~~g 153 (238)
.+|.|.+ ++.+|+|.|+|.+.+.... .....+.|.. ++... ....... ..+.+|
T Consensus 44 -~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 122 (186)
T 1jbj_A 44 -KHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGD 122 (186)
T ss_dssp -SEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSS
T ss_pred -CEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEEecccccccccccccccccCCccccccccccccccccceecCCC
Confidence 1899999 9999999999999775332 2222222221 11100 0000001 123489
Q ss_pred CcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941 154 GSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP 223 (238)
Q Consensus 154 ~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~ 223 (238)
+.+.|.|.+ |.|.+.|++ ++..+.... .....|.|.++..+|+|.|+|.|.|..|.
T Consensus 123 ~~v~l~C~~---p~p~i~W~k-~g~~i~~~~----------~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~ 178 (186)
T 1jbj_A 123 GSVLLTCGL---TDKTIKWLK-DGSIISPLN----------ATKNTWNLGNNAKDPRGTYQCQGAKETSN 178 (186)
T ss_dssp CEEEEECSS---SCSCEEEEE-TTEECCCSS----------CCSSCCEEEETTSCCEEEEEEEESSCEEE
T ss_pred CeEEEEeeC---CCCeEEEEE-CCEECcccC----------CCcceEEECCCCcCcCEEEEEEEEcCcCC
Confidence 999999988 889999999 555543111 14557999999999999999999999883
No 143
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=99.86 E-value=6.4e-21 Score=149.65 Aligned_cols=195 Identities=17% Similarity=0.293 Sum_probs=130.0
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN 87 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 87 (238)
.|.+...+....+.+|+++.|.|.+....+. +.+.+.|++++..+.... ....
T Consensus 103 ~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-----------------------~~~~v~W~~~~~~~~~~~----~~~~ 155 (388)
T 2v5m_A 103 AQYYEADVNKEHVIRGNSAVIKCLIPSFVAD-----------------------FVEVVSWHTDEEENYFPG----AEYD 155 (388)
T ss_dssp CCCCCCBCCCEEEETTSCEEECCBCCTTTTT-----------------------TEEEEEEEETTCCEECSS----SCBT
T ss_pred ccccccCccceeeecCCcEEEEEECcCCCCC-----------------------CcceEEEEeCCCcccccc----cCCC
Confidence 5666666777889999999999998643221 236799999876543211 0112
Q ss_pred ccEEEEEcCCCeEEEEEcccCcccC-eEEEEEEecCCCcce-----eeEEEEEcCCc-----ccccccCCceeecCCCcE
Q psy7941 88 ARLSVTHNDANTWTLNIRSVRREDR-GYYMCQVNTNPMTKQ-----MAFLEVVIPPD-----ISSEETSGDMMVPEGGSA 156 (238)
Q Consensus 88 ~~~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~~~~~~~~~~-----~~~l~v~~~~~-----~~~~~~~~~~~~~~g~~~ 156 (238)
.++..... .+|.|.+++.+|+ |.|+|.+.+...... ...+.|..+.. .... ......+.+|+.+
T Consensus 156 ~~~~~~~~----~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~-~~~~~~v~~G~~v 230 (388)
T 2v5m_A 156 GKYLVLPS----GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPAL-VQKPLELMVAHTI 230 (388)
T ss_dssp TTEEECTT----SCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSS-CCCCEEEETTSCE
T ss_pred CcEEEccC----CcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccc-cCCceEEeeCCcE
Confidence 34433322 2799999999999 999999977532111 12466665422 1111 1223457889999
Q ss_pred EEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEee
Q psy7941 157 KLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCT 236 (238)
Q Consensus 157 ~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~ 236 (238)
.|.|.+.|.|.|.+.|++++.......... .... .....+.|.|.++..+|.|.|+|.|.|..|. .+..+.|.|..+
T Consensus 231 ~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~-~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~ 307 (388)
T 2v5m_A 231 SLLCPAQGFPAPSFRWYKFIEGTTRKQAVV-LNDR-VKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG-ESVETVLTVTAP 307 (388)
T ss_dssp EECCCCEEESCCEEEEEEECTTSSCEEECC-CSSS-EEEETTEEEESSCCGGGCEEEEEEEECSSCE-EEEEEEEEEEEE
T ss_pred EEEEECCCCCCCEEEEEecCCCCccccccc-ccCc-eecccCEEEECcCCHHHCeEEEEEEecCCCc-eeEEEEEEEeCC
Confidence 999999999999999999533211111100 1111 2234568999999999999999999999994 478888888877
Q ss_pred c
Q psy7941 237 Y 237 (238)
Q Consensus 237 p 237 (238)
|
T Consensus 308 p 308 (388)
T 2v5m_A 308 L 308 (388)
T ss_dssp E
T ss_pred C
Confidence 6
No 144
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=99.86 E-value=1.5e-20 Score=156.75 Aligned_cols=173 Identities=19% Similarity=0.311 Sum_probs=121.1
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccE
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARL 90 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 90 (238)
+...+....+.+|+++.|.|.+. +.|.+.++|++++..+. .
T Consensus 206 ~~~~~~~~~~~~G~~~~l~C~~~--------------------------g~p~~~i~W~~~g~~i~---------~---- 246 (642)
T 1e07_A 206 PTISPLNTSYRSGENLNLSCHAA--------------------------SNPPAQYSWFVNGTFQQ---------S---- 246 (642)
T ss_pred cEEecCCcccccCCEEEEEEEcC--------------------------CCCCcEEEEEECCeEcc---------c----
Confidence 34455666788999999999983 34577899999765431 0
Q ss_pred EEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc-c--eeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccC
Q psy7941 91 SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT-K--QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPT 167 (238)
Q Consensus 91 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~--~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~ 167 (238)
...|.|.+++.+|+|.|+|.+.+.... . ....+.|..++............+..|+.+.|.|.+.+.|
T Consensus 247 --------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~~~~g~~v~l~C~~~~~p- 317 (642)
T 1e07_A 247 --------TQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQN- 317 (642)
T ss_pred --------CCceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCCCCEEEcCCceeEecCCcEEEEEECCCCC-
Confidence 117999999999999999999875332 2 2334555543322211223334566688899999998876
Q ss_pred CeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 168 PKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 168 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
+.+.|++ ++..+... ........+..|.|.++..+|.|.|+|.|.|..|...+..+.|.|..+|
T Consensus 318 ~~v~W~~-~g~~l~~~-----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p 381 (642)
T 1e07_A 318 TTYLWWV-NNQSLPVS-----PRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGP 381 (642)
T ss_pred ccEEEEE-CCccCCCc-----CCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCC
Confidence 7999999 44443211 1112223356899999999999999999999998766777888888765
No 145
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.86 E-value=2e-20 Score=134.99 Aligned_cols=184 Identities=18% Similarity=0.251 Sum_probs=112.7
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--eeeeeee---eeEee
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KAVLAIH---EHVIT 85 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~~~~~~---~~~~~ 85 (238)
+.. +..+.+.+|+++.|.|.+....... .+.+.|++++. ....... .....
T Consensus 4 v~~-p~~~~v~~G~~v~L~C~~~~~~~~~-----------------------~~~v~W~~~~~~~~~~~~~~~~~~~~~~ 59 (212)
T 1q0x_L 4 VTQ-ESALTTSPGETVTLTCRSSTGAVTT-----------------------SNYANWVQEKPDHLFTGLIGGTNNRAPG 59 (212)
T ss_dssp EEE-CSEEEECTTCCEEEEEEESSSCCCG-----------------------GGCCEEEEEETTTEEEEEEETTTEECTT
T ss_pred EEC-CCeEeecCCCCEEEEEEecccccCC-----------------------CCeEEEEEeCCCCCceEEEEcCcccCCc
Confidence 455 7888999999999999986422100 24699999632 2110000 00001
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEE----cCCcccccccCCceeecCCCcEEEE
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVV----IPPDISSEETSGDMMVPEGGSAKLV 159 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~----~~~~~~~~~~~~~~~~~~g~~~~l~ 159 (238)
...|+.... ....++|.|.+++.+|+|.|+|.+.+.... ...+.+.|. .+|.+.... .......|+.+.|.
T Consensus 60 ~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~--~~~~~~~g~~v~L~ 136 (212)
T 1q0x_L 60 VPARFSGSL-IGDKAALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFP--PSSEELSTAKATLV 136 (212)
T ss_dssp CCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEEC--CCHHHHTTTEEEEE
T ss_pred ccccEEEEe-eCCEEEEEECCCCccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeC--CCHHHccCCcEEEE
Confidence 235666554 345669999999999999999999875432 223456664 233333211 11223468899999
Q ss_pred EEEccc-cCC-eEEEEeCCCeeeEeecC---CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 160 CKAKGY-PTP-KITWRREDNKEIIVRSN---PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 160 C~~~~~-p~~-~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
|.+.|. |.+ .+.|++ ++..+..... ............+.|.|.....+|.|.|+|.|.|...
T Consensus 137 C~~~g~~p~~~~v~W~k-~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~ 203 (212)
T 1q0x_L 137 CTITDFYPGVVTVDWKV-DGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGH 203 (212)
T ss_dssp EEEEEEBSSCCEEEEEE-TTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTE
T ss_pred EEEEEEeCCCeEEEEEE-CCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCc
Confidence 999885 444 899999 5554422100 0000000112233688888889999999999999765
No 146
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=99.86 E-value=6.1e-20 Score=133.30 Aligned_cols=181 Identities=20% Similarity=0.309 Sum_probs=114.1
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e-e--eeeeee----eEe--
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K-A--VLAIHE----HVI-- 84 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~-~--~~~~~~----~~~-- 84 (238)
+..+.+.+|+++.|.|.+..... ..+.+.|||... . . +..... ...
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~ 62 (220)
T 2fbj_H 7 SGGGLVQPGGSLKLSCAASGFDF------------------------SKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTP 62 (220)
T ss_dssp ECCEEECTTCCEEEEEEEESSCG------------------------GGSCEEEEEECTTSCEEEEEEECTTSSCEEECT
T ss_pred CCCeEecCCCcEEEEEEecCccC------------------------CCceEEEEEECCCCCeEEEEEEccCCCceecCC
Confidence 45688999999999999964211 134699999642 1 1 111100 001
Q ss_pred ecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCC----cceeeEEEEEcC----CcccccccCCceeecCCCc
Q psy7941 85 TNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPM----TKQMAFLEVVIP----PDISSEETSGDMMVPEGGS 155 (238)
Q Consensus 85 ~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~l~v~~~----~~~~~~~~~~~~~~~~g~~ 155 (238)
...+|+.+.... ...++|.|.+++.+|+|.|+|.+.+... ....+.|.|... |.+.... ...+..|+.
T Consensus 63 ~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~---~~~~~~g~~ 139 (220)
T 2fbj_H 63 SLKDKFIISRDNAKNSLYLQMSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT---LPPALSSDP 139 (220)
T ss_dssp TTTTTEEEEECSSSCEEEEEECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC---CCSSSCCSS
T ss_pred ccCCcEEEEeeCCCCEEEEEECCCChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee---cccccCCCc
Confidence 124688877642 4567999999999999999999976532 123456777642 2222211 123567999
Q ss_pred EEEEEEEccc-cC--CeEEEEeCCCeeeEeecCCC--CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 156 AKLVCKAKGY-PT--PKITWRREDNKEIIVRSNPP--SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 156 ~~l~C~~~~~-p~--~~~~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
+.|.|.+.+. |. +.+.|++++ ..+....... ..... ....+.|.|.....+|.|.|+|.|.|..|..
T Consensus 140 v~L~C~~~g~~P~~~~~v~W~~~~-~~~~~~~~~~~~~~~g~-~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~ 211 (220)
T 2fbj_H 140 VIIGCLIHDYFPSGTMNVTWGKSG-KDITTVNFPPALASGGR-YTMSNQLTLPAVECPEGESVKCSVQHDSNPV 211 (220)
T ss_dssp EEEEEEEEEEBSCCCEEEEESCCC-SSCEEEECCCEECSSSC-EEEEEEEEECGGGSCTTCEEEEEEEETTSCC
T ss_pred EEEEEEEEeEECCCcEEEEEecCC-EecceEecCceECCCCC-EEEEEEEEECHHHcCCCCeEEEEEEcCCCce
Confidence 9999999885 76 699999954 3332111100 00111 1122357887777889999999999998844
No 147
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=99.86 E-value=7.7e-21 Score=137.00 Aligned_cols=179 Identities=20% Similarity=0.301 Sum_probs=111.7
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--ceee--eeee---eeEe--e
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKAV--LAIH---EHVI--T 85 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~~--~~~~---~~~~--~ 85 (238)
+..+.+.+|+++.|.|.+..... +.+.+.|+|++ .... .... .... .
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~ 62 (210)
T 3d9a_H 7 SGPSLVKPSQTLSLTCSVTGDSI------------------------TSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPS 62 (210)
T ss_dssp ESCSEECTTSCEEEEEEEESSCG------------------------GGSCEEEEEEETTTEEEEEEEECTTSCEEECGG
T ss_pred CCCEEecCCCcEEEEEEEecccC------------------------CCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcc
Confidence 56678999999999999974210 13569999863 1111 1000 0000 1
Q ss_pred cCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEc----CCcccccccCCceeecCCCcEEEEE
Q psy7941 86 NNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVI----PPDISSEETSGDMMVPEGGSAKLVC 160 (238)
Q Consensus 86 ~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~~g~~~~l~C 160 (238)
..+|+.+.... ...++|.|.+++.+|+|.|+|.+.+.......+.|.|.. +|.+... .....+..|+.+.|.|
T Consensus 63 ~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~~P~v~~~--~~~~~~~~g~~v~L~C 140 (210)
T 3d9a_H 63 LKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANWDGDYWGQGTLVTVSAAKTTPPSVYPL--APGSAAQTNSMVTLGC 140 (210)
T ss_dssp GTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEETTSSCBCCCEEEEECCCCCBCCEEEEE--CCTTSCCCSSEEEEEE
T ss_pred cCceEEEEecCCCCEEEEEECCCCcccCEEEEEEEecCcccccceEEEeccCCCCCCEEEEe--cCCcccccCCcEEEEE
Confidence 24677776532 356799999999999999999997653222345677663 2322221 1112356799999999
Q ss_pred EEccc-cCC-eEEEEeCCCeeeEeecCCCC-CcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 161 KAKGY-PTP-KITWRREDNKEIIVRSNPPS-SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 161 ~~~~~-p~~-~~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
.+.|. |.| .+.|++++. .+........ ... .....+.|.|..+..+| |.|+|.|.|..|
T Consensus 141 ~~~g~~P~p~~v~W~~~~~-~~~~~~~~~~~~~~-~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~ 202 (210)
T 3d9a_H 141 LVKGYFPEPVTVTWNSGSL-SSGVHTFPAVLQSD-LYTLSSSVTVPSSTWPS-ETVTCNVAHPAS 202 (210)
T ss_dssp EEEEEBSSCCEEEEGGGTB-CTTEEECCCEEETT-EEEEEEEEEEEGGGTTT-SCCEEEEEEGGG
T ss_pred EEeeEecCCcEEEEeeCCc-ccceEEcCCccCCC-cEEEEEEEEEcHHHcCC-CcEEEEEEeCCC
Confidence 99885 888 999999543 2211110000 001 11223468888887766 999999999988
No 148
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=99.86 E-value=1.4e-20 Score=136.69 Aligned_cols=181 Identities=19% Similarity=0.303 Sum_probs=112.9
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e-e--eeeee--------e
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K-A--VLAIH--------E 81 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~-~--~~~~~--------~ 81 (238)
.+..+.+.+|+++.|.|.+..... +.+.+.|+|++. . . ..... .
T Consensus 6 ~p~~~~~~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~ 61 (220)
T 1pz5_B 6 ESGGGLVQPGGSMKLSCVASGFTF------------------------SNYWMEWVRQSPEKGLEWVAEIRLKSNNYATH 61 (220)
T ss_dssp EECCEEECTTCCEEEEEEEESSCG------------------------GGSEEEEEEEETTTEEEEEEEECCGGGTTCEE
T ss_pred ccCCEEEcCCCeEEEEEEEcCCcc------------------------CCccEEEEEeCCCCCcEEEEEEEcCCCccccc
Confidence 356678999999999999974221 135699999642 1 1 11110 0
Q ss_pred eEeecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCCc----ceeeEEEEEc----CCcccccccCCceeecC
Q psy7941 82 HVITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPMT----KQMAFLEVVI----PPDISSEETSGDMMVPE 152 (238)
Q Consensus 82 ~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~----~~~~~l~v~~----~~~~~~~~~~~~~~~~~ 152 (238)
......+|+.+.... .+.++|.|.+++.+|+|.|+|.+.+.... ...+.|.|.. +|.+... .....+.+
T Consensus 62 ~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~--~~~~~~~~ 139 (220)
T 1pz5_B 62 YAESVKGRFTISRDDSKSSVYLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPL--VPGCSDTS 139 (220)
T ss_dssp ECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEE--CCCSCCSC
T ss_pred cCcccCCcEEEEEeCCCCeEEEEEccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEc--ccccccCC
Confidence 000114677776532 35679999999999999999999875321 1345677763 2322221 11223567
Q ss_pred CCcEEEEEEEccc-cCC-eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 153 GGSAKLVCKAKGY-PTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 153 g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
|+.+.|.|.+.|. |.| .+.|++++................ ....+.|.|.....++ |.|+|.|.|..|
T Consensus 140 g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~ 209 (220)
T 1pz5_B 140 GSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQSGF-YSLSSLVTVPSSTWPS-QTVICNVAHPAS 209 (220)
T ss_dssp SSSEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTE-EEEEEEEEECGGGTTT-SCCEEEEEEGGG
T ss_pred CCcEEEEEEEEEEeCCCeEEEEecCCcccceEEcCCcccCCe-EEEEEEEEEcchhcCC-ceEEEEEEECCc
Confidence 9999999999885 888 999999554210000000000011 1224468888777766 999999999998
No 149
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=99.86 E-value=3.9e-20 Score=141.49 Aligned_cols=184 Identities=17% Similarity=0.194 Sum_probs=108.3
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN 87 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 87 (238)
+|.+...+... +.+|+++.|.|.+.. +.+.+.|++++............
T Consensus 119 ~p~~~~~~~~~-v~~G~~v~L~C~~~~---------------------------~~~~~~w~k~g~~~~~~~~~~~~--- 167 (316)
T 3vh8_G 119 KPSLLAHPGPL-VKSGERVILQCWSDI---------------------------MFEHFFLHKEGISKDPSRLVGQI--- 167 (316)
T ss_dssp CCEEEEESCSE-EETTCCEEEEEEESS---------------------------CCSEEEEEETTCCSCCEEEECEE---
T ss_pred CCeEEecCCCc-cCCCCeEEEEEcCCC---------------------------CCcEEEEEECCCccccceeeeee---
Confidence 34555444444 789999999999842 23468999987654321111000
Q ss_pred ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc------ceeeEEEEEcC---CcccccccCCceeecCCCcEEE
Q psy7941 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT------KQMAFLEVVIP---PDISSEETSGDMMVPEGGSAKL 158 (238)
Q Consensus 88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~------~~~~~l~v~~~---~~~~~~~~~~~~~~~~g~~~~l 158 (238)
........|.|.+++.+|+|.|+|.+.+.... +....+.|... |.+... + ...+.+|+.+.|
T Consensus 168 ------~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~--~-~~~v~~G~~v~L 238 (316)
T 3vh8_G 168 ------HDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQ--P-GPKVQAGESVTL 238 (316)
T ss_dssp ------ETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEE--S-CSCCCTTSCCEE
T ss_pred ------cCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeC--C-CCeecCCCcEEE
Confidence 01112238999999999999999999875332 44456666642 222221 1 225688999999
Q ss_pred EEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC----CccceEEEEEE
Q psy7941 159 VCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP----TVSKRLMLHVH 234 (238)
Q Consensus 159 ~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~----~~~~~~~l~V~ 234 (238)
.|.+.. |.+.+.|++++............. .......|.|.++. |+|.|+|.+.|..+. ..+..+.|.|.
T Consensus 239 ~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~---~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~ 312 (316)
T 3vh8_G 239 SCSSRS-SYDMYHLSREGGAHERRLPAVRKV---NRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVT 312 (316)
T ss_dssp EEEESS-CCSEEEEEETTSSCCEEEECEECT---TSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC---
T ss_pred EEECCC-CCcEEEEEECCCcCCCceeceecc---CCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEe
Confidence 999974 778999999544322111100000 01122468888888 999999999997653 56889999998
Q ss_pred eec
Q psy7941 235 CTY 237 (238)
Q Consensus 235 ~~p 237 (238)
.+|
T Consensus 313 g~p 315 (316)
T 3vh8_G 313 GNP 315 (316)
T ss_dssp ---
T ss_pred CCC
Confidence 877
No 150
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=99.86 E-value=5.7e-21 Score=155.74 Aligned_cols=199 Identities=17% Similarity=0.249 Sum_probs=126.5
Q ss_pred EEecCCEEEEeEEecCCCceeeeeeeee--------------eeecCCeEEeccC---CCCceEEEEeCCceeeeeeeee
Q psy7941 20 IAQGRDAIFTCVVNNLGGHRVSSSVTDT--------------HVNTGGSIVFPTD---SSAMKVAWIKADTKAVLAIHEH 82 (238)
Q Consensus 20 v~~g~~~~l~C~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~---~~~~~~~W~~~~~~~~~~~~~~ 82 (238)
+...|.+.|+|.+.+ +. +..+.+. .+..|+.+.+.|. .+.+.+.|++.++....
T Consensus 87 ~~~~D~G~Y~C~a~n--g~--~~~~~l~V~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~----- 157 (524)
T 2ec8_A 87 AEATNTGKYTCTNKH--GL--SNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLP----- 157 (524)
T ss_dssp CCSTTCEEEEEEETT--SC--EEEEEEECCCSSCSBCCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCC-----
T ss_pred cchhhCEEEEEeecC--Cc--ceEEEEEECCCCcccccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcC-----
Confidence 445677777777766 32 2222222 1344566666554 23478999995443321
Q ss_pred EeecCccEEEEEcCCCeEEEEEcccCcccCe-EEEEEEecCCCc--ceeeEEEEE----cCCcccccccCCceeecCCCc
Q psy7941 83 VITNNARLSVTHNDANTWTLNIRSVRREDRG-YYMCQVNTNPMT--KQMAFLEVV----IPPDISSEETSGDMMVPEGGS 155 (238)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~~~--~~~~~l~v~----~~~~~~~~~~~~~~~~~~g~~ 155 (238)
.+.++...... .|.|.+++.+|+| .|+|.+.+.... +..+.|.|. .+|.+.. .+....+.+|+.
T Consensus 158 ---~~~~~~~~~~~----~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~--~~~~~~v~~G~~ 228 (524)
T 2ec8_A 158 ---KDLRFIPDPKA----GIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSV--SKASYLLREGEE 228 (524)
T ss_dssp ---SSCEEEEETTT----EEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEEC--SCSEEEEETTSC
T ss_pred ---CCCceeECCCc----cEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEe--cCCcceEEcCCc
Confidence 23334333222 8999999999999 999999765332 335667776 4444433 234457889999
Q ss_pred EEEEEEEccccCCe-EEEEeCCCee-eEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941 156 AKLVCKAKGYPTPK-ITWRREDNKE-IIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233 (238)
Q Consensus 156 ~~l~C~~~~~p~~~-~~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V 233 (238)
+.|.|.+.+.|.+. +.|++++... +.................+.|.|.++..+|.|.|+|.|.|..|.. ...+.|.|
T Consensus 229 v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V 307 (524)
T 2ec8_A 229 FTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSA-NVTTTLEV 307 (524)
T ss_dssp EEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEE-EEEEEEEE
T ss_pred EEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCce-EEEEEEEE
Confidence 99999999988886 9999955441 111110000000012345589999999999999999999999954 66888888
Q ss_pred Eeec
Q psy7941 234 HCTY 237 (238)
Q Consensus 234 ~~~p 237 (238)
..+|
T Consensus 308 ~~~p 311 (524)
T 2ec8_A 308 VDKG 311 (524)
T ss_dssp ESSC
T ss_pred eccC
Confidence 7665
No 151
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.86 E-value=2e-20 Score=136.75 Aligned_cols=198 Identities=14% Similarity=0.232 Sum_probs=120.2
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eeeeeee---
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLAIHEH--- 82 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~~~~~--- 82 (238)
.+...+..+.+.+|+++.|.|.+.... .+.+.+.|||+.. .. +......
T Consensus 3 ~v~q~p~~v~~~~G~~v~L~C~~~~~~------------------------~~~~~v~W~r~~~~~~~~~l~~~~~~~~~ 58 (230)
T 1ypz_F 3 KLEQPEISISRPRDETAQISCKVFIES------------------------FRSVTIHWYRQKPNQGLEFLLYVLATPTH 58 (230)
T ss_dssp SEECSCSEEEEETTSCEEEEEEECCGG------------------------GGGCCEEEEEECTTTCCEEEEEECSSCCC
T ss_pred cccccCCEEEEeCCCcEEEEEEeeccc------------------------cCccEEEEEEECCCCCCEEEEEEecCCee
Confidence 356678889999999999999996421 0134699998642 11 1111100
Q ss_pred -Eee-cCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecC--CC---cceeeEEEEEc---------CCcccccccC
Q psy7941 83 -VIT-NNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTN--PM---TKQMAFLEVVI---------PPDISSEETS 145 (238)
Q Consensus 83 -~~~-~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~--~~---~~~~~~l~v~~---------~~~~~~~~~~ 145 (238)
... ..+|+.+.... .+.++|.|.+++.+|+|.|.|.+.+. .. ....+.|.|.. +|.+.... +
T Consensus 59 ~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~-p 137 (230)
T 1ypz_F 59 IFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFL-P 137 (230)
T ss_dssp EEEESSSSEEEEEECCTTTEEEEEECSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEEC-C
T ss_pred ecCcccCCeEEEEEcCCCCEEEEEECcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEEC-C
Confidence 011 35788877533 36789999999999999999999763 11 12345677762 23322221 2
Q ss_pred CceeecCCCcEEEEEEEccc-cC-CeEEEEeCCCeeeEeecCCC--CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941 146 GDMMVPEGGSAKLVCKAKGY-PT-PKITWRREDNKEIIVRSNPP--SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~~~~-p~-~~~~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~ 221 (238)
....+..|+.+.|.|.+.|. |. +.+.|++.++..+....... ..... ....+.|.|..... + |.|+|.+.|..
T Consensus 138 ~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~~~~g~~l~~~~~~~~~~~~~~-~~~~s~L~i~~~~~-~-~~ytC~v~~~~ 214 (230)
T 1ypz_F 138 SVAETNLHKTGTYLCLLEAFFPDVIRVYWKEKDGNTILDSQEGDTLKTNDT-YMKFSWLTVPERAM-G-KEHRCIVKHEN 214 (230)
T ss_dssp CHHHHHHHSCEEEEEEEEEESSCCCEEEEECTTSSCBCCCEECCCEEETTE-EEEEEEEEECGGGT-T-SCEEEEEECSS
T ss_pred CchhhccCCcceEEEEEeeecCCCeEEEEEccCCeEccccccceeecCCCC-EEEEEEEEEEhhhC-C-CEEEEEEEECC
Confidence 22234568889999999884 75 59999994444332110000 00011 11223567665554 4 89999999987
Q ss_pred CCCccceEEEEEEeecC
Q psy7941 222 PPTVSKRLMLHVHCTYL 238 (238)
Q Consensus 222 g~~~~~~~~l~V~~~p~ 238 (238)
+. ..+.+.+.+||+
T Consensus 215 ~~---~~~~~~~~fp~~ 228 (230)
T 1ypz_F 215 NK---GGADQAIFFPSI 228 (230)
T ss_dssp CT---TTSCEEEEECCC
T ss_pred CC---CceeEeeecCCC
Confidence 62 234456777875
No 152
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Probab=99.85 E-value=1.8e-19 Score=134.41 Aligned_cols=192 Identities=21% Similarity=0.323 Sum_probs=120.8
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--ceee--eeee-e
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKAV--LAIH-E 81 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~~--~~~~-~ 81 (238)
..+.+...+..+.+.+|+++.|.|.+...... .....+.+.|+|+. .... .... .
T Consensus 4 ~~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~--------------------~~~~~~~v~W~k~~~g~~~~~l~~~~~~ 63 (264)
T 2gjj_A 4 ADIVLTQTPSSLPVSVGEKVTMTCKSSQTLLY--------------------SNNQKNYLAWYQQKPGQSPKLLISWAFT 63 (264)
T ss_dssp CCCCEEEECSEEEEETTCCEEEEEEESSCCEE--------------------TTTTEECEEEEEECTTSCCEEEEETTTE
T ss_pred cccceEecCCeEEecCCCcEEEEeEcCCcccc--------------------cccCCceEEEEEECCCCCcEEEEEeccc
Confidence 45677888999999999999999998643200 00003469999963 1111 1100 0
Q ss_pred eEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEcCC------------------cccc
Q psy7941 82 HVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIPP------------------DISS 141 (238)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~------------------~~~~ 141 (238)
.......|+.+.. ....++|.|.+++.+|+|.|+|.+.+... ....+.|.|..++ .+..
T Consensus 64 ~~~~~~~R~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (264)
T 2gjj_A 64 RKSGVPDRFTGSG-SGTDFTLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQL 142 (264)
T ss_dssp ECTTSCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEE
T ss_pred CCCCCCccEEEec-CCCEEEEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEE
Confidence 0001246777654 34567999999999999999999976532 1234567887653 1222
Q ss_pred cccCCceeecCCCcEEEEEEEccccC--CeEEEEeCC-Ce--eeEee-cCC--------CCCcceEEE-----eeceEEE
Q psy7941 142 EETSGDMMVPEGGSAKLVCKAKGYPT--PKITWRRED-NK--EIIVR-SNP--------PSSQKVFSV-----ESEVLSL 202 (238)
Q Consensus 142 ~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~~-~~--~~~~~-~~~--------~~~~~~~~~-----~~~~l~i 202 (238)
.. +....+.+|+.+.|.|.+.+.+. +.+.|+++. +. ..... ... ......... ....|.|
T Consensus 143 ~~-~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I 221 (264)
T 2gjj_A 143 QQ-SGPEVVKTGASVKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQL 221 (264)
T ss_dssp EE-CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred eC-CCCEEEcCCCcEEEEEEEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEE
Confidence 11 22346889999999999988653 799999853 21 11110 000 001111111 1347999
Q ss_pred EEeecCCCeEEEEEeeeC
Q psy7941 203 TKVTRSEMGAYQCIAANG 220 (238)
Q Consensus 203 ~~~~~~d~G~y~C~~~n~ 220 (238)
.++..+|+|.|+|.+.|.
T Consensus 222 ~~v~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 222 NSLTSEDSADYYCVRSGN 239 (264)
T ss_dssp CSCCGGGCEEEEEEEECS
T ss_pred CcCCcccCEEEEEEEecC
Confidence 999999999999999995
No 153
>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B
Probab=99.85 E-value=1.5e-19 Score=131.27 Aligned_cols=180 Identities=19% Similarity=0.389 Sum_probs=112.8
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeee----eee--------
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLA----IHE-------- 81 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~----~~~-------- 81 (238)
.+..+.+.+|+++.|.|.+.... .+.+.+.||+........ ...
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~------------------------~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~ 61 (221)
T 3m8o_H 6 ESGGGLVQPGGSLKLSCAASGFT------------------------LSGSNVHWVRQASGKGLEWVGRIKRNAESDATA 61 (221)
T ss_dssp EESCEEECTTCCEEEEEEEESSC------------------------GGGSEEEEEEECTTSCEEEEEEECCGGGTTCEE
T ss_pred ccCCEEEcCCCCEEEEEEccccc------------------------ccccEEEEEEECCCCCcEEEEEEcccccCcccc
Confidence 34567899999999999997421 113569999853211110 000
Q ss_pred eEeecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCC---CcceeeEEEEEc----CCcccccccCCceeecCC
Q psy7941 82 HVITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNP---MTKQMAFLEVVI----PPDISSEETSGDMMVPEG 153 (238)
Q Consensus 82 ~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~l~v~~----~~~~~~~~~~~~~~~~~g 153 (238)
......+|+.+.... ...++|.|.+++.+|+|.|+|.+.+.. .....+.+.|.. +|.+.... +.. . ..|
T Consensus 62 ~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~-~~~-~-~~g 138 (221)
T 3m8o_H 62 YAASMRGRLTISRDDSKNTAFLQMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLS-LCS-T-QPD 138 (221)
T ss_dssp ECGGGTTSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEE-CCS-C-CCT
T ss_pred cCccccccEEEEecCCCCEEEEEECCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEec-Ccc-c-ccC
Confidence 001124678776543 467799999999999999999997653 123345666652 22222111 111 1 678
Q ss_pred CcEEEEEEEcc-ccC-C-eEEEEeCCCeeeEeecCCC---CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 154 GSAKLVCKAKG-YPT-P-KITWRREDNKEIIVRSNPP---SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 154 ~~~~l~C~~~~-~p~-~-~~~W~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
+.+.|.|.+.+ +|. + .+.|++ ++..+....... ...... ...+.|.|.....+|.|.|+|.|.|..+
T Consensus 139 ~~v~L~C~~~~~~P~~~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~d~g~ytC~v~~~~~ 211 (221)
T 3m8o_H 139 GNVVIACLVQGFFPQEPLSVTWSE-SGQGVTARNFPPSQDASGDLY-TTSSQLTLPATQCLAGKSVTCHVKHYTN 211 (221)
T ss_dssp TEEEEEEEEEEEBSSCSEEEEESC-CSTTCEEEECCCEECSSSSCE-EEEEEEEEEGGGSCTTCEEEEEEEETTS
T ss_pred CCEEEEEEEEeeECCCCEEEEEEE-CCEECceEEcCceeeCCCCcE-EEEEEEEECHHHcCCCCeEEEEEEECCC
Confidence 99999999988 776 4 899998 444332211110 011111 1223688888888899999999999876
No 154
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=99.85 E-value=1e-20 Score=145.54 Aligned_cols=183 Identities=20% Similarity=0.209 Sum_probs=119.8
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEE
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT 93 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (238)
....+.+.+|+++.|.|.+....... ..-..|.+.+.|+|++..... ..+. ..
T Consensus 35 ~~~~v~v~eG~~v~L~C~~~~~~~~~-----------------~~~~~p~~~v~W~k~~~~~~~---------~~~~-~~ 87 (329)
T 3oq3_B 35 GTMNDMAALGEPFSAKCPPIEDSLLS-----------------HRYNDKDNVVNWEKIGKTRRP---------LNRR-VK 87 (329)
T ss_dssp EEEEEEECTTSCEEECCHHHHCTTTG-----------------GGSCCTTCEEEEEECSSSCEE---------CSTT-EE
T ss_pred CcceEEEECCCeEEEEccCCCCcccc-----------------ccccCCCCeeEEEECCCCccc---------cCce-ee
Confidence 34677899999999999986532100 000134678999998765432 1111 11
Q ss_pred EcCCCeEEEEEcccCcccCe-EEEEEEecCCCcc-eeeEEEEE-cCCcccccccCCceeecCCCcEEEEEEEcccc-CCe
Q psy7941 94 HNDANTWTLNIRSVRREDRG-YYMCQVNTNPMTK-QMAFLEVV-IPPDISSEETSGDMMVPEGGSAKLVCKAKGYP-TPK 169 (238)
Q Consensus 94 ~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~~~~-~~~~l~v~-~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~ 169 (238)
..+|.|.+++.+|+| .|+|.+.+..... ....+.+. .+|.+.. ......+.+|+.+.|.|.+.|.| .+.
T Consensus 88 -----~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~~~~~v~~~~p~~~~--~~~~~~~~~G~~v~L~C~~~g~p~~~~ 160 (329)
T 3oq3_B 88 -----NGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIP--ETYELGTHDKYGIDLYCGILYAKHYNN 160 (329)
T ss_dssp -----TTEEEESSCCGGGGGCCEEEEEECTTSCEEEEEEEEEECCCCSCEE--EEEETTSSTTTCEEEECCCCSCCCCCE
T ss_pred -----cceEEEcCCChHhCCCcEEEEEEeCCCceeeEEEEEEEcCCCcEec--cccceEEeCCCcEEEEeccCCCCCCce
Confidence 128999999999999 9999998764322 22222333 3443222 12223466799999999999999 899
Q ss_pred EEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeC--CCCC---ccceEEEEEEeec
Q psy7941 170 ITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANG--VPPT---VSKRLMLHVHCTY 237 (238)
Q Consensus 170 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~--~g~~---~~~~~~l~V~~~p 237 (238)
+.|++ ++..+... ... ....+..|.|.++..+|+|.|+|.|.|. .|.. .++.+.|.|..+|
T Consensus 161 i~W~k-~~~~l~~~-----~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~ 226 (329)
T 3oq3_B 161 ITWYK-NNQELIID-----GTK-YSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQ 226 (329)
T ss_dssp EEEEE-TTEECCCS-----SSS-EEEETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCC
T ss_pred EEEEE-CCccCCCC-----Cce-EecCCCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCC
Confidence 99999 55444211 111 2223578999999999999999999997 6522 1233778887654
No 155
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=99.85 E-value=4.5e-20 Score=137.01 Aligned_cols=181 Identities=19% Similarity=0.289 Sum_probs=111.9
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeee-eeeEeecCc
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAI-HEHVITNNA 88 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~-~~~~~~~~~ 88 (238)
.+..+.+.+|+++.|.|.+.... .+.+.+.|+|+... . .... ........+
T Consensus 8 ~p~~~~v~~G~~v~L~C~~~~~~------------------------~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~ 63 (256)
T 3ux9_B 8 QPPSVSGAPGQRVTISCSGSSSN------------------------IGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPD 63 (256)
T ss_dssp CCSEEEECTTCCEEEEEECCTTT------------------------TTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCT
T ss_pred cCCcEEEcCCCcEEEEEecCCCC------------------------CCCceEEEEEECCCCCCEEEEEecCCCCCCcCC
Confidence 34568899999999999986421 13557999995321 1 1100 000011245
Q ss_pred cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC----cceeeEEEEEcCCc-------------------ccccccC
Q psy7941 89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM----TKQMAFLEVVIPPD-------------------ISSEETS 145 (238)
Q Consensus 89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~l~v~~~~~-------------------~~~~~~~ 145 (238)
|+..... ...++|.|.+++.+|+|.|+|.+.+... ....+.|.|..++. +.. ..+
T Consensus 64 r~~~~~~-~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 141 (256)
T 3ux9_B 64 RFSGSKS-GTSASLAITGLQSEDEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQL-VES 141 (256)
T ss_dssp TEEEEEE-TTEEEEEECSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEE-EEE
T ss_pred cEEEEcc-CCEEEEEECCCChhhCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeE-EcC
Confidence 7776543 3567999999999999999999976421 22345677765442 111 122
Q ss_pred CceeecCCCcEEEEEEEcccc--CCeEEEEeCC-CeeeEee--cCC---------CCCcceEEEe-----eceEEEEEee
Q psy7941 146 GDMMVPEGGSAKLVCKAKGYP--TPKITWRRED-NKEIIVR--SNP---------PSSQKVFSVE-----SEVLSLTKVT 206 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~~-~~~~~~~--~~~---------~~~~~~~~~~-----~~~l~i~~~~ 206 (238)
....+.+|+.+.|.|.+.+.+ .+.+.|++++ +...... ... ....+..... ...|.|.+++
T Consensus 142 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~ 221 (256)
T 3ux9_B 142 GGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLR 221 (256)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCeEEcCCCeEEEEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCC
Confidence 335588999999999998865 6799999853 2211100 000 0011111111 2259999999
Q ss_pred cCCCeEEEEEeeeC
Q psy7941 207 RSEMGAYQCIAANG 220 (238)
Q Consensus 207 ~~d~G~y~C~~~n~ 220 (238)
.+|+|.|+|.+.|.
T Consensus 222 ~~DsG~Y~C~~~~~ 235 (256)
T 3ux9_B 222 AEDTAVYYCARYID 235 (256)
T ss_dssp GGGCEEEEEEEEET
T ss_pred hhhCEEEEEEEEcC
Confidence 99999999999996
No 156
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=99.85 E-value=4.9e-20 Score=131.80 Aligned_cols=181 Identities=18% Similarity=0.287 Sum_probs=108.8
Q ss_pred ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee---cCccEEE
Q psy7941 16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT---NNARLSV 92 (238)
Q Consensus 16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~---~~~~~~~ 92 (238)
..+.+.+|+++.|.|.+.... .+.|.+.+.|++++..+.......... ...|..+
T Consensus 2 ~~v~v~~G~~v~L~C~~~~~~----------------------~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~ 59 (201)
T 1dr9_A 2 IHVTKEVKEVATLSCGHNVSV----------------------EELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIF 59 (201)
T ss_dssp CEEEEETTSCEEECCSCCCCT----------------------THHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEE
T ss_pred ceEEEEeCCCEEEecccCCCc----------------------ccccccEEEEEeCCcEEEEEeCCceeecCcccceeEE
Confidence 357789999999999985321 012356799999876543221111000 1223333
Q ss_pred EEcCCCeEEEEEcccCcccCeEEEEEEecCCC-c-----ceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEc-cc
Q psy7941 93 THNDANTWTLNIRSVRREDRGYYMCQVNTNPM-T-----KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK-GY 165 (238)
Q Consensus 93 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~-----~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~ 165 (238)
. ..+..+|.|.+++.+|+|.|+|.+.+... . .....|.|..++..+. ........|+.+.|.|.+. |+
T Consensus 60 ~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~---~~~~~~~~g~~~~l~C~~~~g~ 134 (201)
T 1dr9_A 60 D--ITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPS---ISDFEIPTSNIRRIICSTSGGF 134 (201)
T ss_dssp E--STTTTEEEECSCCGGGCEEEEEEEEECCTTSCEEEEEEEEEEEEECCCCCCE---EEEEECSSTTEEEEEEEEEEES
T ss_pred c--cCCCcEEEEecccchhCeEEEEEEEcCCCCccccccccEEEEEEcCCCCCCc---eEeccCCCCCeEEEEEecCCcc
Confidence 1 12345899999999999999999987432 2 1344455554422111 0111234588899999995 89
Q ss_pred cCCeEEEEeCCCeeeEeecCCCCCcceEEEee-ce---EEEEEeecCCCeEEEEEeeeCCCCCccceEE
Q psy7941 166 PTPKITWRREDNKEIIVRSNPPSSQKVFSVES-EV---LSLTKVTRSEMGAYQCIAANGVPPTVSKRLM 230 (238)
Q Consensus 166 p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~---l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~ 230 (238)
|.|.+.|++ ++..+.... ........ +. ..+..+..+|.|.|+|.|.|..|.. ++.+.
T Consensus 135 P~p~i~W~k-~g~~l~~~~-----~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~-s~~~~ 196 (201)
T 1dr9_A 135 PEPHLSWLE-NGEELNAIN-----TTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRV-NQTFN 196 (201)
T ss_dssp SCEEEEEEE-SSCEECCSE-----EEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCE-EEEEE
T ss_pred CCCEEEEEE-CCEECcccc-----ceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCccee-eeEEe
Confidence 999999999 454443211 01111111 11 1234566789999999999999833 55544
No 157
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=99.85 E-value=5.5e-21 Score=148.93 Aligned_cols=172 Identities=18% Similarity=0.330 Sum_probs=119.0
Q ss_pred ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe-----ecCccE
Q psy7941 16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI-----TNNARL 90 (238)
Q Consensus 16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~-----~~~~~~ 90 (238)
+.+.+.+|+++.|.|.+. +.|.+.+.|+|++...........+ ....|+
T Consensus 2 e~v~~~~G~~v~L~C~~~--------------------------~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~ 55 (363)
T 1wio_A 2 KVVLGKKGDTVELTCTAS--------------------------QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRA 55 (363)
T ss_dssp EEEEEETTSCEEECCCCT--------------------------TCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGE
T ss_pred CeEEEeCCCeEEEEEEec--------------------------CCCceEEEEEeCCccceeccCccEEecCCcccccce
Confidence 356789999999999974 2346779999987653332211111 112344
Q ss_pred EEEEc--CCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCC
Q psy7941 91 SVTHN--DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP 168 (238)
Q Consensus 91 ~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~ 168 (238)
.+... .....+|.|.+++.+|+|.|+|.+.+.. ..+.|.|.. +.. .....+.+|+.+.|.|.+.+.|.|
T Consensus 56 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~---~~~~l~V~~---~~~---~~~~~v~~G~~v~l~C~~~~~p~~ 126 (363)
T 1wio_A 56 DSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQK---EEVQLLVFG---LTA---NSDTHLLQGQSLTLTLESPPGSSP 126 (363)
T ss_dssp ECCHHHHHTTCCCEEECSCCGGGCEEEEEEETTEE---EEEEEEEEE---EEE---SSCSSEESBSCEEEEEECCTTCCC
T ss_pred eeeeccccCCeEEEEECCCCHHHCEEEEEEEEECC---CcEEEEEEe---CCC---CCceEEecCCCEEEEEEcCCCCCC
Confidence 43321 1234489999999999999999996642 345566653 111 112356789999999999899999
Q ss_pred eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 169 KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 169 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
.+.|+++++.. ......|.|.++..+|+|.|+|.|.|..+ .....+.|.|..+|
T Consensus 127 ~v~W~~~~~~~--------------~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~-~~~~~~~l~v~~~p 180 (363)
T 1wio_A 127 SVQCRSPRGKN--------------IQGGKTLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVVLAFQ 180 (363)
T ss_dssp CEEEECSSSCE--------------EEESSEEEECSBCGGGCEECEEEEEETTE-EEEECCEECEECCS
T ss_pred eEEEEcCCCcc--------------cccceEEEEeeCChhcCCEEEEEEecCCC-eEEEEEEEEEecCC
Confidence 99999954332 22455799999999999999999999765 33566667776544
No 158
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=99.85 E-value=1.5e-21 Score=147.55 Aligned_cols=176 Identities=17% Similarity=0.220 Sum_probs=126.0
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
.+|.|...+..+.+.+|+++.|.|.+.. .+.|+++....
T Consensus 3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~------------------------------~v~W~~~~~~~----------- 41 (292)
T 4dkd_C 3 SIPVIEPSVPELVVKPGATVTLRCVGNG------------------------------SVEWDGPPSPH----------- 41 (292)
T ss_dssp -CCEEESCCSSCEECTTCCEEEEEECSS------------------------------CCCBCCCCCSS-----------
T ss_pred CCceecCCCCeEEEcCCCcEEEEEcCCC------------------------------ceEEccCCCCc-----------
Confidence 5788888899999999999999999853 28999754321
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccc
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY 165 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~ 165 (238)
.... ......+|.|.+++.+|+|.|+|.+.+. +.....+.|.|..++.+... .+....+.+|+.+.|.|.+.+
T Consensus 42 ---~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~~~-~~~~~~v~~g~~v~l~C~~~~- 115 (292)
T 4dkd_C 42 ---WTLY-SDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNV-LAQEVVVFEDQDALLPCLLTD- 115 (292)
T ss_dssp ---CEEC-CBTTEEEEEESSCCGGGCSCEEECCCC----CCEEECCEECCSSCCEEE-SCSEEEEETTSCEECCEEESS-
T ss_pred ---eEEe-ccCceEEEEEcccccccCEEEEEEEccCCCCcceEEEEEEcCccccccc-cCCeEEEcCCCcEEEeeeCCC-
Confidence 1111 1122349999999999999999999764 33455666777766654322 344577889999999999988
Q ss_pred cC--CeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEe
Q psy7941 166 PT--PKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHC 235 (238)
Q Consensus 166 p~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~ 235 (238)
|. +.+.|+++++..+... ..........|.|.++..+|.|.|+|.+.|..+...+..+.|.|..
T Consensus 116 ~~~~~~v~W~~~~~~~~~~~------~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 181 (292)
T 4dkd_C 116 PVLEAGVSLVRVRGRPLMRH------TNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQK 181 (292)
T ss_dssp GGGGSSEEEEEGGGCCCCSS------CCEECCSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEEC
T ss_pred CCcceeEEEEecCCCccccC------CcccccCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeC
Confidence 43 7899999655443211 1222223445999999999999999999998876656688888885
No 159
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.85 E-value=3.7e-21 Score=138.85 Aligned_cols=181 Identities=18% Similarity=0.254 Sum_probs=113.7
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-eeeeeee----eeEee
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-KAVLAIH----EHVIT 85 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~~~~~~----~~~~~ 85 (238)
+.. +..+.+.+|+++.|.|.+.. .|.+.+.|+|+.. ....... .....
T Consensus 3 v~q-p~~~~v~~G~~v~L~C~~~~--------------------------~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~ 55 (212)
T 1nfd_E 3 LIQ-PSSASVTVGETVKITCSGDQ--------------------------LPKNFAYWFQQKSDKNILLLIYMDNKRPSG 55 (212)
T ss_dssp EEC-CSEEEEETTSCCCEEEEETT--------------------------GGGSCCEEEEECTTCCEEEEEBTTTBCCTT
T ss_pred eEC-CCeEEEeCCCcEEEEEecCC--------------------------CCCCeEEEEEECCCCCcEEEEEeccccCCC
Confidence 345 77889999999999999742 2244699998542 1111000 00001
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-C-C--cceeeEEEEEc----CCcccccccCCceeecCCCcEE
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-P-M--TKQMAFLEVVI----PPDISSEETSGDMMVPEGGSAK 157 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~-~--~~~~~~l~v~~----~~~~~~~~~~~~~~~~~g~~~~ 157 (238)
...|+.+.. ....++|.|.+++.+|+|.|+|.+.+. . . ....+.+.|.. +|.+... .....+..|+.+.
T Consensus 56 ~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~--~~~~~~~~g~~v~ 132 (212)
T 1nfd_E 56 IPERFSGST-SGTTATLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVF--PPSPEELRTNKAT 132 (212)
T ss_dssp SCTTEEEEE-ETTEEEEEETTCCGGGCSEEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECC--CCCHHHHHTTEEC
T ss_pred ccccEEEEe-eCCEEEEEECcCCcccCEEEEEEEEcccCcccccCCceEEEEccCCCCCCEEEee--CCchHhccCCceE
Confidence 135666654 345669999999999999999999852 2 1 12234566642 3333221 1112345688999
Q ss_pred EEEEEccc-cC-CeEEEEeCCCeeeEeecCC---CCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941 158 LVCKAKGY-PT-PKITWRREDNKEIIVRSNP---PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP 223 (238)
Q Consensus 158 l~C~~~~~-p~-~~~~W~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~ 223 (238)
|.|.+.|. |. +.+.|++ ++..+...... ...... ....+.|.|..+..+|.|.|+|.|.|..+.
T Consensus 133 L~C~~~g~~p~~~~v~W~k-~g~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 201 (212)
T 1nfd_E 133 LVCLVNDFYPGSATVTWKA-NGATINDGVKTTKPSKQGQN-YMTSSYLSLTADQWKSHNRVSCQVTHEGET 201 (212)
T ss_dssp CCEEEEEEBSSCCEEEEEE-TTEEECSSCBCCCCBCSSSC-EEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred EEEEEEeeECCccEEEEEE-CCeEcCCCeecCCceecCCC-ceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence 99999886 55 7999999 55544321110 000111 122356899999999999999999998873
No 160
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=99.85 E-value=4.9e-20 Score=157.56 Aligned_cols=187 Identities=24% Similarity=0.380 Sum_probs=135.9
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
..+|.+...+....+.+|+++.|.|.+. +.|.+.+.|++++..+..
T Consensus 427 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~--------------------------g~p~p~v~W~~~g~~l~~-------- 472 (816)
T 3dmk_A 427 FDPPVIRQAFQEETMEPGPSVFLKCVAG--------------------------GNPTPEISWELDGKKIAN-------- 472 (816)
T ss_dssp SCCCEEEEECCCEEECSSSCEEEEEEEE--------------------------CSSCCEEEEEETTEECCS--------
T ss_pred cCCCceEecCcceEEcCCCCEEEEEEEe--------------------------cCCCCEEEEEECCEECCC--------
Confidence 3567777777888899999999999985 345678999998765421
Q ss_pred cCccEEEEE----cCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEE
Q psy7941 86 NNARLSVTH----NDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160 (238)
Q Consensus 86 ~~~~~~~~~----~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C 160 (238)
..++.... .......|.|.+++.+|+|.|+|.+.+. +.....+.|.|..+|.+.. .....+..|+.+.|.|
T Consensus 473 -~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~---~~~~~v~~G~~v~l~C 548 (816)
T 3dmk_A 473 -NDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQ---MEKKAIVAGETLIVTC 548 (816)
T ss_dssp -CTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSCEECC---CCCEEEETTCCEEEEC
T ss_pred -CCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCCeeEc---cCCeEEecCCeEEEEE
Confidence 22222211 1122347999999999999999999875 3345566778877765432 3345678899999999
Q ss_pred EEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEee-cCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT-RSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 161 ~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
.+.+.|.+.+.|++ ++..+... .......++.|.|.++. .+|.|.|+|.|.|..|...+..+.+.|..+|
T Consensus 549 ~~~g~p~~~i~W~k-~~~~l~~~------~~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p 619 (816)
T 3dmk_A 549 PVAGYPIDSIVWER-DNRALPIN------RKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLP 619 (816)
T ss_dssp CEECSSEEEEEEEE-TTEESCCS------TTEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCC
T ss_pred EecCCCCCEEEEEE-CCeEcccC------CceEEecCCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCC
Confidence 99999999999999 55444321 12223345679999997 5899999999999998655667788887765
No 161
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}
Probab=99.85 E-value=4.6e-20 Score=129.70 Aligned_cols=158 Identities=19% Similarity=0.332 Sum_probs=102.1
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee---e-Eeec--Cc
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE---H-VITN--NA 88 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~---~-~~~~--~~ 88 (238)
...+.+.+|++++|.|.+... .+.+.+.|+|.+...+..... . .... .+
T Consensus 6 ~~~v~v~~G~~vtL~c~~~~~-------------------------~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~ 60 (180)
T 2dru_A 6 VPNVNAITGSNVTLTILKHPL-------------------------ASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKD 60 (180)
T ss_dssp CCEEEEETTSCEEECCCSSCC-------------------------CSCSEEEEESSSSCEEEEECSSSCEEECSSTTTT
T ss_pred cceEEEEeCCCEEEeCCCCCC-------------------------CceeEEEEEecCCeEEEEEECCCCeeEcchhcCC
Confidence 457789999999999987421 124579999953222221110 0 1111 25
Q ss_pred cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEE-ccccC
Q psy7941 89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKA-KGYPT 167 (238)
Q Consensus 89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~ 167 (238)
|+.+. ....+|.|.+++.+|+|.|+|.+.+.........|.|..++..+. +.+ .+..+.|.|.+ .| |.
T Consensus 61 R~~l~---~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~L~V~~~~~~P~------i~~-~~~~v~L~C~~~~g-p~ 129 (180)
T 2dru_A 61 RVDLD---KTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSKPM------IYW-ECSNATLTCEVLEG-TD 129 (180)
T ss_dssp TEEEC---TTTCCEEECSCCGGGCEEEEEEEESSSEEEEEEEEEEECCCCCCE------EEE-EGGGTEEEEECSSC-TT
T ss_pred eEEEe---CCCccEEEcCCCHHHCeEEEEEEEcCCeEEEEEEEEEECCCCCCE------EEe-cCCCEEEEEEeCCC-CC
Confidence 66652 234589999999999999999997655334455677765432111 111 34669999999 66 89
Q ss_pred CeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941 168 PKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP 223 (238)
Q Consensus 168 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~ 223 (238)
|.+.|++ ++..+.. ..+..|.+. . .+|.|.|+|.|.|..+.
T Consensus 130 p~i~W~~-~~~~l~~------------~~~~~l~~~-~-~~d~g~Y~C~a~N~~~~ 170 (180)
T 2dru_A 130 VELKLYQ-GKEHLRS------------LRQKTMSYQ-W-TNLRAPFKCKAVNRVSQ 170 (180)
T ss_dssp CEEEEEE-TTEEEEE------------ESSSEEEEE-C-SCCSSCEEEEEEETTEE
T ss_pred CEEEEEE-CCeECcC------------CCCCEEEEE-E-hhcCccEEEEEecCcCc
Confidence 9999999 5544431 122344442 2 68999999999999983
No 162
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=99.85 E-value=7.9e-20 Score=135.95 Aligned_cols=187 Identities=16% Similarity=0.235 Sum_probs=106.7
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--cee--eeeee---
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKA--VLAIH--- 80 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~--~~~~~--- 80 (238)
.|.+...+..+.+.+|+++.|.|.+... +.+.+.|+|.. ... .....
T Consensus 2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~--------------------------~~~~v~W~r~~~~~~~~~~~~~~~~~ 55 (259)
T 3omz_A 2 SSNLEGRTKSVIRQTGSSAEITCDLAEG--------------------------STGYIHWYLHQEGKAPQRLLYYDSYT 55 (259)
T ss_dssp ---------CEEEETTCCEEEECCC-------------------------------CEEEEEEECTTSCCEEEEEEETTT
T ss_pred ccccccCCceeEecCCCcEEEEEEEccC--------------------------CCcEEEEEEECCCCCcEEEEEEecCc
Confidence 5677888899999999999999998642 24569999942 111 11111
Q ss_pred e-eEee---cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC----cceeeEEEEEcCC---------------
Q psy7941 81 E-HVIT---NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM----TKQMAFLEVVIPP--------------- 137 (238)
Q Consensus 81 ~-~~~~---~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~l~v~~~~--------------- 137 (238)
. .... .+.++.........++|.|.+++.+|+|.|+|.+.+... ....+.|.|..++
T Consensus 56 ~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~ 135 (259)
T 3omz_A 56 SSVVLESGISPGKYDTYGSTRKNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDG 135 (259)
T ss_dssp CCEEECTTCCBTTEEEECC--CCCEEEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC-----------------
T ss_pred CccccCCCCCcceeEeecCCCCeEEEEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccC
Confidence 0 0000 012232333334566899999999999999999976532 2334567776532
Q ss_pred cccccccCCceeecCCCcEEEEEEEcc-ccCCeEEEEeCCC-eee--Eee-cCC---CCCcceEEE-----eeceEEEEE
Q psy7941 138 DISSEETSGDMMVPEGGSAKLVCKAKG-YPTPKITWRREDN-KEI--IVR-SNP---PSSQKVFSV-----ESEVLSLTK 204 (238)
Q Consensus 138 ~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~~-~~~--~~~-~~~---~~~~~~~~~-----~~~~l~i~~ 204 (238)
...+...+..+.+.+|+.+.|.|.+.+ .|.+.+.|++... ... ... ... ......... ....|.|.+
T Consensus 136 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 215 (259)
T 3omz_A 136 AQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISA 215 (259)
T ss_dssp -CEEECCCCCEEEETTCCEEECCEEECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESS
T ss_pred CeeeEEeCCEEEEcCCCCEEEEEECCCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECC
Confidence 112223345577899999999999877 4788999998432 111 100 000 000111111 124699999
Q ss_pred eecCCCeEEEEEeeeC
Q psy7941 205 VTRSEMGAYQCIAANG 220 (238)
Q Consensus 205 ~~~~d~G~y~C~~~n~ 220 (238)
++.+|+|.|+|.+.+.
T Consensus 216 v~~~DsG~Y~C~~~~~ 231 (259)
T 3omz_A 216 LQLEDSAKYFCALGES 231 (259)
T ss_dssp CCGGGCSEEEEEEESC
T ss_pred CChhHCEEEEEEEeCc
Confidence 9999999999999753
No 163
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-19 Score=147.83 Aligned_cols=188 Identities=16% Similarity=0.220 Sum_probs=118.0
Q ss_pred eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-eeee---eee-eeEeec
Q psy7941 12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-KAVL---AIH-EHVITN 86 (238)
Q Consensus 12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~~~---~~~-~~~~~~ 86 (238)
...|..+.+.+|+++.|.|.+.+ .|.+.+.|+|++. .... ... ......
T Consensus 4 ~~~p~~~~v~~G~~v~L~C~~~~--------------------------~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~ 57 (523)
T 2rcj_C 4 LTQPPSASGTPGQRVTISCTGTS--------------------------SGSITVNWYQQLPGMAPKLLIYRDAMRPSGV 57 (523)
T ss_pred cccCCceEEecCCcEEEEEEEec--------------------------cCCceEEEEEeCCCCCcEEEEEeccccCccc
Confidence 34567789999999999999953 2356799999752 1111 000 000112
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC----cceeeEEEEE----cCCcccccccCCceeecCCCcEEE
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM----TKQMAFLEVV----IPPDISSEETSGDMMVPEGGSAKL 158 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~l~v~----~~~~~~~~~~~~~~~~~~g~~~~l 158 (238)
..|+... ......+|.|.+++.+|+|.|+|.+.+... ....+.|.|. .+|.+... +....+.+|+.+.|
T Consensus 58 ~~r~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~--~~~~~~~~g~~v~l 134 (523)
T 2rcj_C 58 PTRFSGS-KSGTSASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLF--PPSSEELQANKATL 134 (523)
T ss_pred CCcEEEe-cCCCEEEEEECCCChhhCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEec--CCcccccCCCceEE
Confidence 3466532 234566899999999999999999977432 2234567774 33433322 22334567889999
Q ss_pred EEEEccccCC--eEEEEeCCCeeeEeecCC---CCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEE
Q psy7941 159 VCKAKGYPTP--KITWRREDNKEIIVRSNP---PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLM 230 (238)
Q Consensus 159 ~C~~~~~p~~--~~~W~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~ 230 (238)
.|.+.|.|++ .+.|++ ++..+...... ...........+.|.|..+..+|.|.|+|.|.|..|.. ..++.
T Consensus 135 ~C~~~g~~p~~~~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~-~~~~~ 209 (523)
T 2rcj_C 135 VCLISDFYPGAVTVAWKA-DGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTV-EKTVA 209 (523)
T ss_pred EEEeccccCCceEEEEec-CCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCccc-cccee
Confidence 9999987654 999999 44433211100 00000001112369999999999999999999998743 44443
No 164
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=99.85 E-value=1.2e-19 Score=137.14 Aligned_cols=185 Identities=13% Similarity=0.231 Sum_probs=114.0
Q ss_pred ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeeee------ee
Q psy7941 13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAIH------EH 82 (238)
Q Consensus 13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~~------~~ 82 (238)
..+..+.+.+|+++.|.|.+..... ..+.+.|+|+... . +.... ..
T Consensus 27 ~~p~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~ 82 (291)
T 2gki_A 27 QQSGPELVKPGASVKMSCKASGYTF------------------------TSYVMHWVKQKPGQGLEWIGYINPYNDGTKY 82 (291)
T ss_dssp EECCCEEECTTCCEEEEEEEESSCG------------------------GGSCEEEEEECTTSCCEEEEEEETTTTEEEE
T ss_pred EcCCcEEecCCCCEEEEEeccCCcc------------------------cccEEEEEEECCCCCcEEEEEEecCCCcccc
Confidence 3456788999999999999864210 0346999996421 1 11100 00
Q ss_pred EeecCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCC-C-----cceeeEEEEEcC-----------C---cccc
Q psy7941 83 VITNNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNP-M-----TKQMAFLEVVIP-----------P---DISS 141 (238)
Q Consensus 83 ~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~-----~~~~~~l~v~~~-----------~---~~~~ 141 (238)
.....+|+.+... ....++|.|.+++.+|+|.|+|.+.+.. . ....+.|.|..+ + ...+
T Consensus 83 ~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v 162 (291)
T 2gki_A 83 NEKFKGKATLTSDKSSSTAYMELSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVM 162 (291)
T ss_dssp CGGGBTTBCEEEEGGGTEEEEEECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCE
T ss_pred CcccCCCEEEEEeCCCCEEEEEECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceE
Confidence 0012356666543 2356799999999999999999997652 1 112345666551 1 1112
Q ss_pred cccCCceeecCCCcEEEEEEEccccCC------eEEEEeCC-Ce--eeEeecC----CCCCcceEE-E--eeceEEEEEe
Q psy7941 142 EETSGDMMVPEGGSAKLVCKAKGYPTP------KITWRRED-NK--EIIVRSN----PPSSQKVFS-V--ESEVLSLTKV 205 (238)
Q Consensus 142 ~~~~~~~~~~~g~~~~l~C~~~~~p~~------~~~W~~~~-~~--~~~~~~~----~~~~~~~~~-~--~~~~l~i~~~ 205 (238)
...+..+.+.+|+.+.|.|.+.+.|.+ .+.|+++. +. ....... ......... . ....|.|.++
T Consensus 163 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 242 (291)
T 2gki_A 163 SQSPSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSV 242 (291)
T ss_dssp ECSCSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred EcCCCEEEEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCC
Confidence 223445678899999999999887665 89999953 22 1111110 000111111 1 1237999999
Q ss_pred ecCCCeEEEEEeeeCC
Q psy7941 206 TRSEMGAYQCIAANGV 221 (238)
Q Consensus 206 ~~~d~G~y~C~~~n~~ 221 (238)
+.+|+|.|+|.+.|..
T Consensus 243 ~~~DsG~Y~C~a~~~~ 258 (291)
T 2gki_A 243 QAEDLAVYYCKQSYYH 258 (291)
T ss_dssp CGGGCEEEEEEEEETT
T ss_pred CHHHCEEEEEEEccCC
Confidence 9999999999999854
No 165
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=99.85 E-value=1.2e-19 Score=135.70 Aligned_cols=192 Identities=20% Similarity=0.310 Sum_probs=117.0
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e-e--eeeee-e
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K-A--VLAIH-E 81 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~-~--~~~~~-~ 81 (238)
..+.+...+..+.+.+|+++.|.|.+...... ....+.+.|+++.. . . +.... .
T Consensus 14 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~---------------------~~~~~~v~W~k~~~g~~~~~l~~~~~~ 72 (268)
T 1x9q_A 14 SDVVMTQTPLSLPVSLGDQASISCRSSQSLVH---------------------SNGNTYLRWYLQKPGQSPKVLIYKVSN 72 (268)
T ss_dssp CCCCEEEECSEECCCTTCCEEEEEEESSCCBC---------------------TTSCBCEEEEEECTTSCCEEEEETTTE
T ss_pred ccceEEeeCCeEEecCCCCEEEEeEecCCccc---------------------ccCCceEEEEEECCCCCCEEEEEecCC
Confidence 45677788889999999999999998643210 00035699998642 1 1 11000 0
Q ss_pred eEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEcCCcc--------------------
Q psy7941 82 HVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIPPDI-------------------- 139 (238)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~~~-------------------- 139 (238)
.......|+.+.. ....++|.|.+++.+|+|.|+|.+.+... ....+.|.|...+..
T Consensus 73 ~~~~~~~r~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~ 151 (268)
T 1x9q_A 73 RVSGVPDRFSGSG-SGTDFTLKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDG 151 (268)
T ss_dssp ECTTSCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGG
T ss_pred CCCCCcccEEEEc-CCCEEEEEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCcccccccccccccccccc
Confidence 0001246777654 34567999999999999999999976532 123345666643210
Q ss_pred -cccccCCceeecCCCcEEEEEEEcccc--CCeEEEEeCC-Ceee--Ee-ec----------CCCCCcceEEEe-----e
Q psy7941 140 -SSEETSGDMMVPEGGSAKLVCKAKGYP--TPKITWRRED-NKEI--IV-RS----------NPPSSQKVFSVE-----S 197 (238)
Q Consensus 140 -~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~~-~~~~--~~-~~----------~~~~~~~~~~~~-----~ 197 (238)
.....+....+.+|+.+.|.|.+.+.+ .+.+.|++.. +... .. .. ............ .
T Consensus 152 ~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 231 (268)
T 1x9q_A 152 GVKLDETGGGLVQPGGAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSS 231 (268)
T ss_dssp GCEEEEECCEEECTTCCEEEEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTE
T ss_pred ceEEECCCceEecCCCcEEEEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCE
Confidence 011112346788999999999998865 3799999842 2211 11 00 001112222211 2
Q ss_pred ceEEEEEeecCCCeEEEEEeeeC
Q psy7941 198 EVLSLTKVTRSEMGAYQCIAANG 220 (238)
Q Consensus 198 ~~l~i~~~~~~d~G~y~C~~~n~ 220 (238)
..|.|.+++.+|+|.|+|.+.+.
T Consensus 232 ~~L~I~~v~~~DsG~Y~C~a~~~ 254 (268)
T 1x9q_A 232 VYLQMNNLRVEDTGIYYCTGASY 254 (268)
T ss_dssp EEEEECSCCGGGCEEEEEEEEET
T ss_pred EEEEECCCCHHHCEEEEEEEccC
Confidence 47999999999999999999974
No 166
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Probab=99.85 E-value=6.4e-20 Score=135.24 Aligned_cols=185 Identities=19% Similarity=0.301 Sum_probs=116.6
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--cee--eeeee-ee
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKA--VLAIH-EH 82 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~--~~~~~-~~ 82 (238)
.+.+...+..+.+.+|+++.|.|.. + .+.+.+.|+|.. ... ..... ..
T Consensus 2 ~~~v~~~p~~v~v~~G~~v~L~C~~-~--------------------------~~~~~v~W~r~~~~~~~~~~~~~~~~~ 54 (245)
T 4ei6_B 2 GPKVLQIPSHQIIDMGQMVTLNCDP-V--------------------------SNHLYFYWYKQILGQQMEFLVNFYNGK 54 (245)
T ss_dssp CCCCEEECSEEEEETTCCEEEEEEC-C--------------------------TTCCEEEEEEEETTTEEEEEEEEETTE
T ss_pred CcceEeCCceEEecCCCCEEEEEEc-C--------------------------CCCCEEEEEEECCCCCcEEEEEECCCc
Confidence 3567788889999999999999933 1 235579999832 111 11110 11
Q ss_pred -Eeec---CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-----CcceeeEEEEEc------CCcccccccCCc
Q psy7941 83 -VITN---NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-----MTKQMAFLEVVI------PPDISSEETSGD 147 (238)
Q Consensus 83 -~~~~---~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-----~~~~~~~l~v~~------~~~~~~~~~~~~ 147 (238)
.... .+|+.+.......++|.|.+++.+|+|.|+|.+.+.. .....+.+.|.. +|.+... .+..
T Consensus 55 ~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~-~~~~ 133 (245)
T 4ei6_B 55 VMEKSKLFKDQFSVERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVF-EPSE 133 (245)
T ss_dssp EEEECTTCCTTEEEECCTTSCEEEEECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEE-CCCH
T ss_pred eeccCCCccCCEEEEeccCceEEEEECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEe-CCCc
Confidence 1111 1788877655678899999999999999999997421 122344577763 3333221 1222
Q ss_pred eeecCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCCC---------CcceEEEeeceEEEEEeecCC-CeEEEE
Q psy7941 148 MMVPEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPPS---------SQKVFSVESEVLSLTKVTRSE-MGAYQC 215 (238)
Q Consensus 148 ~~~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~i~~~~~~d-~G~y~C 215 (238)
..+..|+.+.|.|.+.| .|.+ .+.|++ ++..+........ .... ......|.|.....+| .|.|+|
T Consensus 134 ~~~~~g~~v~l~C~~~g~~p~~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~g~-~~~~s~L~i~~~~~~d~~g~ytC 211 (245)
T 4ei6_B 134 AEISHTQKATLVCLATGFYPDHVELSWWV-NGKEVHSGVCTDPQPLKEQPALNDSR-YALSSRLRVSATFWQNPRNHFRC 211 (245)
T ss_dssp HHHHHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEECTTEEECSSCEESSTTSTTCC-EEEEEEEEEEHHHHSCTTCEEEE
T ss_pred ccccCCCceEEEEEEeeEeCCCeEEEEEE-CCEECCCCcccccccccccccCCCCC-EEEEEEEEEcHHHhccCCCeEEE
Confidence 33456899999999988 5555 899999 5555432111000 0111 1122357788777778 899999
Q ss_pred EeeeCCC
Q psy7941 216 IAANGVP 222 (238)
Q Consensus 216 ~~~n~~g 222 (238)
.|.|...
T Consensus 212 ~v~~~~l 218 (245)
T 4ei6_B 212 QVQFYGL 218 (245)
T ss_dssp EEEECCB
T ss_pred EEEECCC
Confidence 9999764
No 167
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=99.85 E-value=2.6e-19 Score=130.25 Aligned_cols=182 Identities=17% Similarity=0.276 Sum_probs=111.8
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e-e--eeeeee----eEe--
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K-A--VLAIHE----HVI-- 84 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~-~--~~~~~~----~~~-- 84 (238)
+..+.+.+|+++.|.|.+..... ..+.+.|+|+.. . . +..... ...
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~ 62 (223)
T 1dee_B 7 SGGGVVQPGKSLRLSCAASGFTF------------------------SGYGMHWVRQAPGKGLEWVALISYDESNKYYAD 62 (223)
T ss_dssp ECCCEECTTCCEEEEEEEESSCG------------------------GGSCEEEEEECTTSCEEEEEEECTTSCCEEECT
T ss_pred CCCEEEcCCCcEEEEEEecCccc------------------------CCceEEEEEECCCCCcEEEEEEecCCCccccCc
Confidence 35778999999999999974211 134699999642 1 1 111000 001
Q ss_pred ecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCC-------cceeeEEEEEc----CCcccccccCCceeecC
Q psy7941 85 TNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPM-------TKQMAFLEVVI----PPDISSEETSGDMMVPE 152 (238)
Q Consensus 85 ~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-------~~~~~~l~v~~----~~~~~~~~~~~~~~~~~ 152 (238)
...+|+.+.... .+.++|.|.+++.+|+|.|+|.+.+... ....+.|.|.. +|.+.... + ...+..
T Consensus 63 ~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~-~-~~~~~~ 140 (223)
T 1dee_B 63 SVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLV-S-CENSNP 140 (223)
T ss_dssp TTBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEE-C-TTCCCS
T ss_pred ccCCeEEEEecCCCCEEEEEECCCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEec-C-CcccCC
Confidence 124688876543 3577999999999999999999976531 11334677763 23322111 1 122467
Q ss_pred CCcEEEEEEEccc-cCC-eEEEEeCCCeeeEe-ecCCC-CCcceEEEeeceEEEEEeec--CCCeEEEEEeeeCCCC
Q psy7941 153 GGSAKLVCKAKGY-PTP-KITWRREDNKEIIV-RSNPP-SSQKVFSVESEVLSLTKVTR--SEMGAYQCIAANGVPP 223 (238)
Q Consensus 153 g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~~-~~~~~-~~~~~~~~~~~~l~i~~~~~--~d~G~y~C~~~n~~g~ 223 (238)
|+.+.|.|.+.+. |.| .+.|++.++..+.. ..... ...... ...+.|.|..... +|.|.|+|.|.|..+.
T Consensus 141 g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~ 216 (223)
T 1dee_B 141 SSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKY-AATSQVLLPSKDVAQGTNEHVVCKVQHPNGN 216 (223)
T ss_dssp SSEEEEEEEEEEEBSSCCEEEEEETTSCBCSCEEECCCEEETTEE-EEEEEEEEECTTTTSTTCCEEEEEEECTTCC
T ss_pred CCcEEEEEEEEEEeCCCeEEEeEccCCCccceeEECCccccCCeE-EEEEEEEEcHHHhccCCCCEEEEEEEeCCCC
Confidence 8999999999885 777 99999944433321 00000 001111 1233577766655 6789999999999883
No 168
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}
Probab=99.84 E-value=5.1e-20 Score=137.65 Aligned_cols=185 Identities=16% Similarity=0.245 Sum_probs=116.2
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--ceeee--eee-ee
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKAVL--AIH-EH 82 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~~~--~~~-~~ 82 (238)
.+.+..++..+.+.+|+++.|.|.+.. +.+.+.|+|.. ..... ... ..
T Consensus 26 ~~~v~~~p~~v~v~~G~~v~L~C~~~~---------------------------~~~~v~W~r~~~~~~~~~~~~~~~~~ 78 (268)
T 3pl6_D 26 GAGVSQTPSNKVTEKGKYVELRCDPIS---------------------------GHTALYWYRQSLGQGPEFLIYFQGTG 78 (268)
T ss_dssp -SSCBCCCSEEEEETTCCEEEEEBCBT---------------------------TCCEEEEEEECTTSCCEEEEEEETTE
T ss_pred CceeEeCCCEEEecCCCCEEEEEEeCC---------------------------CCceEEEEEECCCCCcEEEEEECCCC
Confidence 456777888999999999999999752 24569999932 21111 110 00
Q ss_pred Eeec----CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC---CCcceeeEEEEEc------CCcccccccCCcee
Q psy7941 83 VITN----NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN---PMTKQMAFLEVVI------PPDISSEETSGDMM 149 (238)
Q Consensus 83 ~~~~----~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~---~~~~~~~~l~v~~------~~~~~~~~~~~~~~ 149 (238)
.... .+|+.+.......++|.|.+++.+|+|.|+|.+.+. ........+.|.. +|.+... .+....
T Consensus 79 ~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~-~~~~~~ 157 (268)
T 3pl6_D 79 AADDSGLPNDRFFAVRPEGSVSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVF-EPSEAE 157 (268)
T ss_dssp EEECTTCCSTTEEEECTTSSSEEEEECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEE-CCCHHH
T ss_pred ccccCCCccCcEEEEecCCCEEEEEECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEe-CCCccc
Confidence 1111 168887765556789999999999999999999763 1223344577764 3332221 122233
Q ss_pred ecCCCcEEEEEEEccccC-C-eEEEEeCCCeeeEeecCCC---------CCcceEEEeeceEEEEEeecCC-CeEEEEEe
Q psy7941 150 VPEGGSAKLVCKAKGYPT-P-KITWRREDNKEIIVRSNPP---------SSQKVFSVESEVLSLTKVTRSE-MGAYQCIA 217 (238)
Q Consensus 150 ~~~g~~~~l~C~~~~~p~-~-~~~W~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~i~~~~~~d-~G~y~C~~ 217 (238)
+..|+.+.|.|.+.|.++ + .+.|++ ++..+....... ..... ......|.+.....+| .|.|+|.|
T Consensus 158 ~~~g~~v~L~C~~~g~~p~~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~-~~~~s~l~i~~~~~~d~~g~YtC~v 235 (268)
T 3pl6_D 158 ISHTQKATLVCLATGFYPDHVELSWWV-NGKEVHSGVCTDPQPLKEQPALNDSR-YSLSSRLRVSATFWQNPRNHFRCQV 235 (268)
T ss_dssp HHHHSEEEEEEEEEEEBSSCEEEEEEE-SSSEECTTEEECSSCEESSTTCTTCC-EEEEEEEEEEHHHHSCTTCEEEEEE
T ss_pred ccCCCceEEEEEECcccCCCeEEEEEE-CCEECCCCeEeccccccccccCCCCc-EEEEEEEEEcHHHhccCCCEEEEEE
Confidence 456899999999988554 4 899999 454442211000 00111 1122357777777777 99999999
Q ss_pred eeCCC
Q psy7941 218 ANGVP 222 (238)
Q Consensus 218 ~n~~g 222 (238)
.|...
T Consensus 236 ~~~~l 240 (268)
T 3pl6_D 236 QFYGL 240 (268)
T ss_dssp EECCB
T ss_pred EcCCC
Confidence 99864
No 169
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.84 E-value=1e-20 Score=148.76 Aligned_cols=181 Identities=17% Similarity=0.268 Sum_probs=122.6
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
..+|.|...+..+.+.+|+++.|.|.+.. +.|.+.++|+|++..+...
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~~-------------------------~~p~~~v~W~k~g~~~~~~------- 51 (395)
T 1bih_A 4 DKYPVLKDQPAEVLFRENNPTVLECIIEG-------------------------NDQGVKYSWKKDGKSYNWQ------- 51 (395)
T ss_dssp -CCCEECCCCSEEEEETTSCEEECCCEES-------------------------CCSSCEEEEEESSSBCCTT-------
T ss_pred CCCCEeecCCCceEEeCCCEEEEEEEEec-------------------------CCCCceEEEEECCcCcccc-------
Confidence 46899999999999999999999999963 1346789999987654221
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcc--eeeEEEEEcCCcccccccCCceeecCCCcEEEEEEE-
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK--QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKA- 162 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~- 162 (238)
..++... ....+|.|.+++.+|+|.|+|.+.+..... ..+.+.|...+.+.. .+....+.+|+.+.|.|.+
T Consensus 52 -~~~~~~~---~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~p~~--~~~~~~~~~G~~v~l~C~~~ 125 (395)
T 1bih_A 52 -EHNAALR---KDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPA--KTHEKTPIEGRPFQLDCVLP 125 (395)
T ss_dssp -TTTEEEC---TTSCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEEEECCCC--EEEEECCBTTEEEEECCCCC
T ss_pred -cceEEEe---cCCceEEEecCCCCCCcEEEEEEEeCCCeEEeEEEEEEEEEeecCCc--CCcceeeeeCCcEEEEecCC
Confidence 1112111 122389999999999999999998753322 234455543222221 1234567799999999996
Q ss_pred ccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCe---EEEEEeeeCCCCC
Q psy7941 163 KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG---AYQCIAANGVPPT 224 (238)
Q Consensus 163 ~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G---~y~C~~~n~~g~~ 224 (238)
.+.|.+.+.|++++....................++.|.|.++..+|.| .|+|.+.|..|..
T Consensus 126 ~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~ 190 (395)
T 1bih_A 126 NAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDE 190 (395)
T ss_dssp EEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSS
T ss_pred CCCCCCeEEEEecCCCcCcccccccccccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecccce
Confidence 7899999999995411111000011122233344568999999999999 9999999998853
No 170
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=99.84 E-value=4.7e-21 Score=147.87 Aligned_cols=198 Identities=20% Similarity=0.279 Sum_probs=128.4
Q ss_pred EEecCCEEEEeEEecCCCceeeeeeeee----------------eeecCCeEEeccC--------CCCceEEEEeCCcee
Q psy7941 20 IAQGRDAIFTCVVNNLGGHRVSSSVTDT----------------HVNTGGSIVFPTD--------SSAMKVAWIKADTKA 75 (238)
Q Consensus 20 v~~g~~~~l~C~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~--------~~~~~~~W~~~~~~~ 75 (238)
+...|.+.|.|.+.+..+.. ...+.+. .+..|+.+.+.|. .|.+.+.|++++..+
T Consensus 88 v~~~D~G~Y~C~~~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~ 166 (339)
T 3o4o_C 88 ALQEDSGTYVCTTRNASYCD-KMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLL 166 (339)
T ss_dssp BCTTCCEEEECCEEETTEEE-EEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBC
T ss_pred CCcccCEEEEEEEECCcceE-EEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeC
Confidence 56789999999998865432 2222222 2456788888776 578899999976654
Q ss_pred eeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-----cceeeEEEEEcC-----CcccccccC
Q psy7941 76 VLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-----TKQMAFLEVVIP-----PDISSEETS 145 (238)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-----~~~~~~l~v~~~-----~~~~~~~~~ 145 (238)
.. ...++.... ....|.|.+++.+|+|.|+|.+.+... ....+.|.|... |.+.. .+
T Consensus 167 ~~--------~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~--~~ 233 (339)
T 3o4o_C 167 DK--------DNEKFLSVR---GTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIIS--PL 233 (339)
T ss_dssp CT--------TCSSEEECT---TSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECC--CS
T ss_pred CC--------CCceeEEcC---CcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEec--CC
Confidence 21 122333222 112899999999999999999987532 234556777643 23322 24
Q ss_pred CceeecCCCcEEEEEEE---cccc-CCeEEEEeCCCeeeEeecC---CCCCcceEEEeec------eEEEEEeecCCC-e
Q psy7941 146 GDMMVPEGGSAKLVCKA---KGYP-TPKITWRREDNKEIIVRSN---PPSSQKVFSVESE------VLSLTKVTRSEM-G 211 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~---~~~p-~~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~------~l~i~~~~~~d~-G 211 (238)
....+..|+.+.|.|.+ .|.| .+.+.|+++ +..+..... ............+ .|.|.++..+|. |
T Consensus 234 ~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G 312 (339)
T 3o4o_C 234 KTISASLGSRLTIPCKVFLGTGTPLTTMLWWTAN-DTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHM 312 (339)
T ss_dssp CCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESS-SSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCC
T ss_pred ceeEeccCCCEEEEEEEECCCCCCCCceEEEEEC-CeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCc
Confidence 45568889999999999 8988 889999984 433211100 0000111111122 699999999998 9
Q ss_pred EEEEEeeeCCCCCccceEEEEE
Q psy7941 212 AYQCIAANGVPPTVSKRLMLHV 233 (238)
Q Consensus 212 ~y~C~~~n~~g~~~~~~~~l~V 233 (238)
.|+|.|.|..|.. +..+.+.+
T Consensus 313 ~Y~C~a~N~~G~~-~~~~~~~~ 333 (339)
T 3o4o_C 313 DFKCVVHNTLSFQ-TLRTTVKE 333 (339)
T ss_dssp CCEEEEEETTEEE-CCBCCCCC
T ss_pred cEEEEEEeccCce-EEEEEhhH
Confidence 9999999999944 55555443
No 171
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=99.84 E-value=1.6e-20 Score=134.69 Aligned_cols=159 Identities=20% Similarity=0.345 Sum_probs=103.8
Q ss_pred EEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCe
Q psy7941 20 IAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANT 99 (238)
Q Consensus 20 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (238)
+.+|+++.|.|.+ |.+.+.|+|++..+.... ...
T Consensus 15 ~~~G~~v~L~C~~-----------------------------p~~~i~W~k~g~~l~~~~-----------------~~~ 48 (204)
T 1sy6_A 15 YQEDGSVLLTCDA-----------------------------EAKNITWFKDGKMIGFLT-----------------EDK 48 (204)
T ss_dssp CCSSSEEEEEECS-----------------------------CSSEEEEEETTEEEEEEE-----------------SSC
T ss_pred ecCCCeEEEEEcC-----------------------------CCCEEEEEECCEECCCCC-----------------CCC
Confidence 3579999999987 145699999776542210 011
Q ss_pred EEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEc------C-------------------C----cccccccCCceee
Q psy7941 100 WTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVI------P-------------------P----DISSEETSGDMMV 150 (238)
Q Consensus 100 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~------~-------------------~----~~~~~~~~~~~~~ 150 (238)
.+|.|.+++.+|+|.|+|.+.+.. +....+.+.. . . .......+ ....
T Consensus 49 ~~L~i~~v~~~DsG~Y~C~~~~~~--s~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~v~ 125 (204)
T 1sy6_A 49 KKWNLGSNAKDPRGMYQCKGSQNK--SKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTP-YKVS 125 (204)
T ss_dssp CCEEEEEGGGCCEEEEEEESSSSC--CCCEEEEEEC------------------------------------CCC-CEEE
T ss_pred CeEEeCCCCcCCCEEEEEEecCCC--CeeEEEEEEEeccccccccccccccccccccccccccccccccceecCC-ceee
Confidence 279999999999999999964422 2223344330 0 0 00011111 1222
Q ss_pred cCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEe-ecCCCeEEEEEeeeCCCCCccceE
Q psy7941 151 PEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKV-TRSEMGAYQCIAANGVPPTVSKRL 229 (238)
Q Consensus 151 ~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~G~y~C~~~n~~g~~~~~~~ 229 (238)
.+|+.+.|.|. +.|.|.+.|++ ++..+.... ........++.|.|.++ ..+|+|.|+|.|.|..|...+..+
T Consensus 126 ~~G~~v~L~C~--g~p~p~i~W~k-~~~~l~~~~----~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l 198 (204)
T 1sy6_A 126 ISGTTVILTCP--QYPGSEILWQH-NDKNIGGDE----DDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYL 198 (204)
T ss_dssp EETTEEEEECS--CCCSSCEEEEE-TTEEESCCT----TCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEE
T ss_pred ecCCcEEEEcC--CCCCCceEEEE-CCEECCCcc----CCceEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEE
Confidence 38999999998 78889999999 555443211 01112234678999999 999999999999999996557777
Q ss_pred EEEEE
Q psy7941 230 MLHVH 234 (238)
Q Consensus 230 ~l~V~ 234 (238)
.|.|.
T Consensus 199 ~l~~~ 203 (204)
T 1sy6_A 199 YLRAR 203 (204)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 77664
No 172
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=99.84 E-value=6.8e-20 Score=143.58 Aligned_cols=193 Identities=22% Similarity=0.368 Sum_probs=130.8
Q ss_pred cCCEEEEeEEecCCCceeeeeeeee---------------eeecCCeEEeccC----CCCceEEEEeCCceeeeeeeeeE
Q psy7941 23 GRDAIFTCVVNNLGGHRVSSSVTDT---------------HVNTGGSIVFPTD----SSAMKVAWIKADTKAVLAIHEHV 83 (238)
Q Consensus 23 g~~~~l~C~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~----~~~~~~~W~~~~~~~~~~~~~~~ 83 (238)
.|.+.|+|.+.|..+...+..+.+. .+..|+.+.+.|. .|.+.+.|++++......
T Consensus 72 ~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~----- 146 (382)
T 1cs6_A 72 KDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIP----- 146 (382)
T ss_dssp HHCEEEEEEEEETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCC-----
T ss_pred ccCEEEEEEEEcCCcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccc-----
Confidence 7899999999987654433222221 2556788888876 367899999987653221
Q ss_pred eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-c-----ceeeEEEEEc------CCcccccccCCceeec
Q psy7941 84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-T-----KQMAFLEVVI------PPDISSEETSGDMMVP 151 (238)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~-----~~~~~l~v~~------~~~~~~~~~~~~~~~~ 151 (238)
.+.+..... ...+|.|.+++.+|+|.|+|.+.+... . .....+.+.. +|.+.. ..+....+.
T Consensus 147 --~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~-~~~~~~~~~ 220 (382)
T 1cs6_A 147 --ADGRRFVSQ---TTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKA-KFPADTYAL 220 (382)
T ss_dssp --CCSSEEECT---TTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEE-CCCSEEEEE
T ss_pred --cCceEEEec---CceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceec-cCCCceEEe
Confidence 122221111 122799999999999999999976431 1 1123344432 222221 123456788
Q ss_pred CCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEE
Q psy7941 152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLML 231 (238)
Q Consensus 152 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l 231 (238)
+|+.+.|.|.+.+.|.+.+.|+++++. +.. ........|.|.++..+|.|.|+|.|.|..|. .+..+.|
T Consensus 221 ~G~~v~l~C~~~g~p~~~i~W~~~~~~-~~~---------~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l 289 (382)
T 1cs6_A 221 TGQMVTLECFAFGNPVPQIKWRKLDGS-QTS---------KWLSSEPLLHIQNVDFEDEGTYECEAENIKGR-DTYQGRI 289 (382)
T ss_dssp TTCCEEEECEEEEESCCEEEEEECCSC-CSC---------CCSBSSSEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEE
T ss_pred CCCeEEEEEEEccCCCCEEEEEECCcc-ccc---------EEecCCcEEEEccCChhhCEEEEEEEEcCCCe-EEEEEEE
Confidence 999999999999999999999995543 211 01223457999999999999999999999985 4778888
Q ss_pred EEEeec
Q psy7941 232 HVHCTY 237 (238)
Q Consensus 232 ~V~~~p 237 (238)
.|..+|
T Consensus 290 ~V~~~p 295 (382)
T 1cs6_A 290 IIHAQP 295 (382)
T ss_dssp EEEEEE
T ss_pred EEecCC
Confidence 888766
No 173
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_H
Probab=99.84 E-value=4e-20 Score=133.77 Aligned_cols=176 Identities=20% Similarity=0.279 Sum_probs=103.8
Q ss_pred ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeee-e---e-----eeE
Q psy7941 13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLA-I---H-----EHV 83 (238)
Q Consensus 13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~-~---~-----~~~ 83 (238)
..+..+.+.+|+++.|.|.+.... .+.+.+.|||........ . . ...
T Consensus 4 ~~p~~~~v~~G~~v~L~C~~~~~~------------------------~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~ 59 (215)
T 3nl4_H 4 EESGGRLVTPGTPLTLACTVSGFS------------------------LNTYSMFWVRQAPGKGLQWIGIISNFGVIYYA 59 (215)
T ss_dssp EEECCCEECTTCCEEEEEEEESSC------------------------TTTCCEEEEEECTTSCEEEEEEECTTCCEEEC
T ss_pred EcCCCEEEcCCCcEEEEEEecCcc------------------------cCCCeEEEEEECCCCCeEEEEEEecCCccccC
Confidence 445678899999999999996421 123569999853211110 0 0 000
Q ss_pred eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-----cceeeEEEEE----cCCcccccccCCceeecCCC
Q psy7941 84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-----TKQMAFLEVV----IPPDISSEETSGDMMVPEGG 154 (238)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-----~~~~~~l~v~----~~~~~~~~~~~~~~~~~~g~ 154 (238)
....+|+.+.. ....++|.|.+++.+|+|.|+|.+.+... ....+.+.|. .+|.+... .....+..|+
T Consensus 60 ~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~--~~~~~~~~g~ 136 (215)
T 3nl4_H 60 TWAKGRFTISK-TSTTVDLKITSPTTEDTATYFCVRKYGSEWGGDLWGPGTLVTVSSGQPKAPSVFPL--APCCGDTPSS 136 (215)
T ss_dssp GGGTTTEEEEE-CSSEEEEEESSCCGGGCEEEEEEEECSSSSCEEEECCCEEEEECSSCCBCCEEEEE--CCCTTCCC--
T ss_pred CcccCCEEEEe-eCCEEEEEECCCCcccCEEEEEEEecCCCccceEEcCCEEEEEeCCCcCCCEEEEe--cCCccccCCC
Confidence 11246888776 56777999999999999999999976532 2334557776 23333211 1122355799
Q ss_pred cEEEEEEEccccCC--eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEE---EEeecCCCeEEEEEeeeCCC
Q psy7941 155 SAKLVCKAKGYPTP--KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSL---TKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 155 ~~~l~C~~~~~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i---~~~~~~d~G~y~C~~~n~~g 222 (238)
.+.|.|.+.+.+++ .+.|+++ +..+...... . ....++.+.+ ..+...| |.|+|.|.|..+
T Consensus 137 ~v~l~C~~~~~~p~~~~v~W~~~-g~~~~~~~~~----~-~~~~~g~~~~~s~l~v~~~d-g~ytC~v~~~~~ 202 (215)
T 3nl4_H 137 TVTLGCLVKGYLPEPVTVTWNSG-TLTNGVRTFP----S-VRQSSGLYSLSSVVSVTSSS-QPVTCNVAHPAT 202 (215)
T ss_dssp CEEEEEEEEEEBSSCCEEEEGGG-TBCTTEEECC----C-EECTTSCEEEEEEEEECC----CCEEEEEEGGG
T ss_pred cEEEEEEEeeeeCCCeEEEEeeC-CEECCeEecC----c-eECCCCCEEEEEEEEEeccC-CEEEEEEEeCCC
Confidence 99999999885433 6889984 4322111100 0 0111222333 4466667 999999999887
No 174
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*
Probab=99.84 E-value=1.1e-19 Score=132.46 Aligned_cols=179 Identities=21% Similarity=0.329 Sum_probs=111.3
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e-ee--eeee----eeEe--
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K-AV--LAIH----EHVI-- 84 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~-~~--~~~~----~~~~-- 84 (238)
+..+.+.+|+++.|.|.+..... ..+.+.|+|+.. . .. .... ....
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~ 62 (225)
T 1op3_H 7 SGGGLVKAGGSLILSCGVSNFRI------------------------SAHTMNWVRRVPGGGLEWVASISTSSTYRDYAD 62 (225)
T ss_dssp ECCEEEETTCCEEEEEEEESSCG------------------------GGSCEEEEEECTTSCEEEEEEECGGGCCEEECT
T ss_pred CCCeEecCCCCEEEEEEecCccc------------------------CCceEEEEEeCCCCCcEEEEEEccCCCccccCc
Confidence 45678999999999999964210 034699998642 1 11 1100 0001
Q ss_pred ecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCC---------cceeeEEEEEcC----CcccccccCCceee
Q psy7941 85 TNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPM---------TKQMAFLEVVIP----PDISSEETSGDMMV 150 (238)
Q Consensus 85 ~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~---------~~~~~~l~v~~~----~~~~~~~~~~~~~~ 150 (238)
...+|+.+.... ...++|.|.+++.+|+|.|+|.+.+... ....+.|.|... |.+.... +. ..+
T Consensus 63 ~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~-~~~ 140 (225)
T 1op3_H 63 AVKGRFTVSRDDLEDFVYLQMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLA-PS-SKS 140 (225)
T ss_dssp TTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEEC-CC-TTC
T ss_pred ccCCceEEEecCCCCEEEEEECCCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEec-cc-ccc
Confidence 124678776542 3567999999999999999999977532 113456777752 2222211 11 124
Q ss_pred cCCCcEEEEEEEccc-cCC-eEEEEeCCCeeeEeecCCC--CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 151 PEGGSAKLVCKAKGY-PTP-KITWRREDNKEIIVRSNPP--SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 151 ~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
..|+.+.|.|.+.|. |.| .+.|++++. .+....... ..... ....+.|.|.....+| |.|+|.|.|..+
T Consensus 141 ~~g~~v~L~C~~~g~~P~p~~v~W~~~~~-~~~~~~~~~~~~~~g~-~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~ 213 (225)
T 1op3_H 141 TSGGTAALGCLVKDYFPEPVTVSWNSGAL-TSGVHTFPAVLQSSGL-YSLSSVVTVPSSSLGT-QTYICNVNHKPS 213 (225)
T ss_dssp CCCCEEEEEEEEEEEBSSCCEEECCTTSC-CTTCEECCCEECTTSC-EEEEEEEEEEGGGTTC-CCCCEEEEEGGG
T ss_pred cCCCcEEEEEEEEeEECCCeEEEEecCCC-cCCeEecCceeCCCCC-EEEEEEEEEechhcCC-CcEEEEEEcCCC
Confidence 679999999999885 777 999999543 211000000 00111 1123468888888788 999999999765
No 175
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=143.62 Aligned_cols=181 Identities=15% Similarity=0.255 Sum_probs=106.1
Q ss_pred eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee-cCccEEEEEcC
Q psy7941 18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT-NNARLSVTHND 96 (238)
Q Consensus 18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 96 (238)
..+.+|+++.|.|.+.+... |...+.|++++..+.......... .+..+....
T Consensus 127 ~~~~~g~~~~l~C~~~g~p~------------------------~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s-- 180 (327)
T 2wng_A 127 ARATPQHTVSFTCESHGFSP------------------------RDITLKWFKNGNELSDFQTNVDPVGESVSYSIHS-- 180 (327)
T ss_dssp SCBCTTCEEEEEEEEEEEBS------------------------SCCEEEEEETTEECCCEEEEEECSSCCSCEEEEE--
T ss_pred cccCCCCEEEEEEEEeCccC------------------------CCcEEEEEECCEEccccccccccccCCCceEEEE--
Confidence 56788999999999864211 112799999876543322111111 223344433
Q ss_pred CCeEEEEEcccCcccCeEEEEEEecCCCcc--e--eeEE--EEEcCCcccccccCCceeecCCCcEEEEEEEccc-cCC-
Q psy7941 97 ANTWTLNIRSVRREDRGYYMCQVNTNPMTK--Q--MAFL--EVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY-PTP- 168 (238)
Q Consensus 97 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~--~~~l--~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~- 168 (238)
.|.|.....+|.|.|+|.+.+..... . .+.+ .+..+|.+...... +.+|+.+.|.|.+.|. |++
T Consensus 181 ----~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~----~~~G~~v~l~C~~~g~~p~~~ 252 (327)
T 2wng_A 181 ----TAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP----VRAENQVNVTCQVRKFYPQRL 252 (327)
T ss_dssp ----EEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC----CSSTTCCEEEEEEEEEBSSCE
T ss_pred ----EEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC----cCCCCcEEEEEEEccccCCCc
Confidence 68888777778899999998754331 1 2222 23345554432211 6789999999999995 444
Q ss_pred eEEEEeCCCeeeEeecCCCC--CcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941 169 KITWRREDNKEIIVRSNPPS--SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233 (238)
Q Consensus 169 ~~~W~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V 233 (238)
.+.|++ ++..+........ ...........|.|..+..+|.|.|+|.|.|..|...++++.+.+
T Consensus 253 ~v~W~k-~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s~~~~~~~ 318 (327)
T 2wng_A 253 QLTWLE-NGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKV 318 (327)
T ss_dssp EEEEEE-TTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCEEEEEECC-
T ss_pred EEEEEE-CCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCchhheEEEe
Confidence 899999 5555543211000 000001112358888888999999999999999977777776543
No 176
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=99.84 E-value=8.6e-20 Score=148.76 Aligned_cols=184 Identities=16% Similarity=0.237 Sum_probs=112.1
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCc-eEEEEeCCceeeeeeeeeEee
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM-KVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~ 85 (238)
.+|.+........+.+|+++.|.|.+.+. .|.+ .+.|++++.............
T Consensus 218 ~~P~v~~~~~~~~~~~G~~~~l~C~~~g~-------------------------~P~p~~v~W~k~g~~~~~~~~~~~~~ 272 (523)
T 2rcj_C 218 KGPSVFPLAPSSKSTSGGTAALGCLVKDY-------------------------FPQPVTVSWNSGALTSGVHTFPAVLQ 272 (523)
T ss_pred cCCEEEecCCCcccccCCceEEEEEEece-------------------------eCCCeEEEEecCCcccceEeCCcEec
Confidence 34555433334456799999999998632 1344 799999876532211111112
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG 164 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~ 164 (238)
.++.+.... .|.|.+++.+| |.|+|.+.|... ....+.+.+...|.+..........+.+|+.+.|.|.+.|
T Consensus 273 ~~g~~~~~s------~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g 345 (523)
T 2rcj_C 273 SSGLYSLSS------VVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVD 345 (523)
T ss_pred CCCcEEEEE------EEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcCceEEecCCCchhhcccCCceEEEEEEec
Confidence 233333322 89999999999 999999987643 2334445444444432221111122678999999999998
Q ss_pred ccC----CeEEEEeCCCeeeEeecCCC--CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941 165 YPT----PKITWRREDNKEIIVRSNPP--SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP 223 (238)
Q Consensus 165 ~p~----~~~~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~ 223 (238)
.|+ +.+.|++ ++..+....... ..........+.|.|..+..+|.|.|+|.|.|..+.
T Consensus 346 ~~p~~~~~~v~W~k-~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 409 (523)
T 2rcj_C 346 VSHEDPQVKFNWYV-DGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALP 409 (523)
T ss_pred ccCCCCceEEEEEE-CCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCC
Confidence 653 4999999 444443211100 000001112235888888899999999999998764
No 177
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=99.84 E-value=1.1e-19 Score=134.07 Aligned_cols=183 Identities=17% Similarity=0.296 Sum_probs=114.3
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--eeee--eee---eeE
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KAVL--AIH---EHV 83 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~~~--~~~---~~~ 83 (238)
+...+..+.+.+|+++.|.|.+.+. +.+.+.|+|... .... ... ...
T Consensus 4 v~~~p~~v~v~~G~~v~L~C~~~~~--------------------------~~~~v~W~k~~~~~~~~~~~~~~~~~~~~ 57 (245)
T 3nfj_J 4 IHQWPATLVQPVGSPLSLECTVEGT--------------------------SNPNLYWYRQAAGRGLQLLFYSVGIGQIS 57 (245)
T ss_dssp EEEECSEEEEETTCCEEEEEEEESC--------------------------SSCEEEEEEESTTSCEEEEEEESSTTCCB
T ss_pred eeCCCceEEecCCCCEEEEEEecCC--------------------------CCceEEEEEECCCCCcEEEEEECCCcccC
Confidence 4567888999999999999999642 355799999421 1111 100 000
Q ss_pred eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-----CC--cceeeEEEEEc------CCcccccccCCceee
Q psy7941 84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-----PM--TKQMAFLEVVI------PPDISSEETSGDMMV 150 (238)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-----~~--~~~~~~l~v~~------~~~~~~~~~~~~~~~ 150 (238)
....+|+.+.......++|.|.+++.+|+|.|+|.+.+. .. ....+.+.|.. +|.+... .+....+
T Consensus 58 ~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~-~~~~~~~ 136 (245)
T 3nfj_J 58 SEVPQNLSASRPQDRQFILSSKKLLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFPPEVAVF-EPSEAEI 136 (245)
T ss_dssp CSSCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEECCTTTSSCCCEECCCEEEEEESCGGGCBCCEEEEE-ECCHHHH
T ss_pred CccCCcEEEEecCCCEEEEEECCCChhhCEEEEEEEeeccCCCceeEEECCCeEEEEEcccCCCCCCceEee-cCCcccc
Confidence 112357776655556779999999999999999999771 11 12334577764 3333221 1122234
Q ss_pred cCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCCC---------CcceEEEeeceEEEEEeecCC-CeEEEEEee
Q psy7941 151 PEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPPS---------SQKVFSVESEVLSLTKVTRSE-MGAYQCIAA 218 (238)
Q Consensus 151 ~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~ 218 (238)
..|+.+.|.|.+.| +|.+ .+.|++ ++..+........ .... ......|.|.....+| .|.|+|.|.
T Consensus 137 ~~g~~~~l~C~~~g~~p~~~~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~g~~YtC~v~ 214 (245)
T 3nfj_J 137 SHTQKATLVCLATGFFPDHVELSWWV-NGKEVHSGVCTDPQPLKEQPALNDSR-YALSSRLRVSATFWQNPRNHFRCQVQ 214 (245)
T ss_dssp HHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEECTTEEECSSCEESSSSSTTCC-EEEEEEEEEEHHHHTCTTCEEEEEEE
T ss_pred cCCCceEEEEEEccCcCCCEEEEEEE-CCEECCCCcccccccccccccCCCCC-EEEEEEEEECHHHhccCCCeEEEEEE
Confidence 45899999999988 4555 799999 5555432110000 1111 1222367777777777 569999999
Q ss_pred eCCC
Q psy7941 219 NGVP 222 (238)
Q Consensus 219 n~~g 222 (238)
|...
T Consensus 215 ~~~~ 218 (245)
T 3nfj_J 215 FYGL 218 (245)
T ss_dssp ECCB
T ss_pred ECCC
Confidence 9865
No 178
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=99.84 E-value=2e-20 Score=139.64 Aligned_cols=156 Identities=19% Similarity=0.310 Sum_probs=112.5
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEE
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTH 94 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (238)
+....+.+|+++.|.|.+. |.+.+.| ++..+.. .
T Consensus 105 ~~~~~v~~G~~v~l~C~~~----------------------------p~~~i~W--~g~~~~~---------~------- 138 (265)
T 2oz4_A 105 LTKPEVSEGTEVTVKCEAH----------------------------PRAKVTL--NGVPAQP---------L------- 138 (265)
T ss_dssp ESCSEEETTCEEEEEEECC----------------------------TTSEEEE--SSCSSSC---------C-------
T ss_pred cCCceecCCCcEEEEEEcc----------------------------CCCEEEE--CCEEccC---------C-------
Confidence 3455677899999999874 3567999 4443310 0
Q ss_pred cCCCeEEEEEcccCcccCeEEEEEEec-C-CCcc---eeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCe
Q psy7941 95 NDANTWTLNIRSVRREDRGYYMCQVNT-N-PMTK---QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPK 169 (238)
Q Consensus 95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~-~-~~~~---~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~ 169 (238)
.....|.|..+...|+|.|+|.+.+ . +... ....|.|..+|.+.....+....+.+|+.+.|.|.+.|.|.|.
T Consensus 139 --~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~ 216 (265)
T 2oz4_A 139 --GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPE 216 (265)
T ss_dssp --SSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCE
T ss_pred --CCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCCe
Confidence 1122788889999999999999964 2 2222 4566888877776554445566788999999999999999999
Q ss_pred EEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEee
Q psy7941 170 ITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCT 236 (238)
Q Consensus 170 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~ 236 (238)
+.|++++.... ..+.+ ..+..+|+|.|+|.|.|..|. .++++.|.|++|
T Consensus 217 i~W~~~~~~~~---------------~~g~~--~~v~~~d~G~Y~C~a~N~~G~-~~~~~~l~V~~p 265 (265)
T 2oz4_A 217 LKCLKDGTFPL---------------PIGES--VTVTRDLEGTYLCRARSTQGE-VTREVTVNVLSP 265 (265)
T ss_dssp EEEEETTTEEC---------------CTTSC--EECCGGGCEEEEEEEEETTEE-EEEEEEEEEECC
T ss_pred EEEEECCcccC---------------CCCcE--EEeehhhCeEEEEEEECCCCc-EEEEEEEEEecC
Confidence 99999554111 11122 247889999999999999994 488899998764
No 179
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Probab=99.84 E-value=1.4e-19 Score=136.10 Aligned_cols=186 Identities=15% Similarity=0.257 Sum_probs=115.8
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eeeee-----
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLAIH----- 80 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~~----- 80 (238)
.+.. +..+.+.+|++++|.|.+.... .+.+.+.|++..... .....
T Consensus 3 ~v~q-p~~~~v~~G~~v~L~C~~~~~~------------------------~~~~~v~W~r~~~~~~~~~~~~~~~~~~~ 57 (280)
T 3fku_X 3 QLVQ-SGAEVKKPGSSVKVSCTSSEVT------------------------FSSFAISWVRQAPGQGLEWLGGISPMFGT 57 (280)
T ss_dssp CEEC-CCCCEECTTCCEEEEEEECCSC------------------------CTTSCEEECCBCSSSCCCCCEEECTTTCC
T ss_pred eEEc-CCCEEECCCCcEEEEEEeeccC------------------------CCCeEEEEEEeCCCCCCEEEEEEeccCCc
Confidence 4455 7788999999999999986421 124569999853211 11110
Q ss_pred -eeEeecCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCC--------C--cceeeEEEEEc-------------
Q psy7941 81 -EHVITNNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNP--------M--TKQMAFLEVVI------------- 135 (238)
Q Consensus 81 -~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--------~--~~~~~~l~v~~------------- 135 (238)
.......+|+.+... ....++|.|.+++.+|+|.|+|.+.+.. . ....+.|.|..
T Consensus 58 ~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~ 137 (280)
T 3fku_X 58 PNYAQKFQGRVTITADQSTRTAYMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGG 137 (280)
T ss_dssp EEECGGGTTTCEEEEETTTTEEEEEECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC-------------
T ss_pred cccCcccCCcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCce
Confidence 011112457777654 4466799999999999999999997641 1 12234566655
Q ss_pred CCcccccccCCceeecCCCcEEEEEEEcc-cc-CCeEEEEeCCC-eeeEe--ecC----CCCCcceEEE---eeceEEEE
Q psy7941 136 PPDISSEETSGDMMVPEGGSAKLVCKAKG-YP-TPKITWRREDN-KEIIV--RSN----PPSSQKVFSV---ESEVLSLT 203 (238)
Q Consensus 136 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p-~~~~~W~~~~~-~~~~~--~~~----~~~~~~~~~~---~~~~l~i~ 203 (238)
.+.+.+...+. ..+.+|+++.|.|.+.+ .+ .+.+.|++... ..... ... .....+.... ....|.|.
T Consensus 138 ~~~~~v~~~p~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~ 216 (280)
T 3fku_X 138 GIQPGLTQPPS-VSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTIT 216 (280)
T ss_dssp -CCCSBBCCSE-EEECTTCCEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEEC
T ss_pred EeeeEEEeCCc-EEEecCCCEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEEC
Confidence 01222222233 77899999999999987 44 47999987322 11110 000 0001111111 12359999
Q ss_pred EeecCCCeEEEEEeeeCC
Q psy7941 204 KVTRSEMGAYQCIAANGV 221 (238)
Q Consensus 204 ~~~~~d~G~y~C~~~n~~ 221 (238)
+++.+|+|.|+|.+.|..
T Consensus 217 ~v~~~DsG~Y~C~~~~~~ 234 (280)
T 3fku_X 217 GLQPEDEADYYCSTWDSS 234 (280)
T ss_dssp SCCGGGCSEEEEEEEETT
T ss_pred CCCHHHCEEEEEEEecCC
Confidence 999999999999999876
No 180
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=99.84 E-value=1.1e-19 Score=126.78 Aligned_cols=160 Identities=14% Similarity=0.109 Sum_probs=103.1
Q ss_pred ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE-e--ecCccEEE
Q psy7941 16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV-I--TNNARLSV 92 (238)
Q Consensus 16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~-~--~~~~~~~~ 92 (238)
+.+.+.+|++++|.|.+.. |.+.+.|++++........... . ...+|+.+
T Consensus 3 ~~v~~~~G~~VtL~c~~~~---------------------------~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~ 55 (171)
T 1ccz_A 3 QQIYGVVYGNVTFHVPSNV---------------------------PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYL 55 (171)
T ss_dssp EEEEEETTCCEEECCCCSS---------------------------CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEE
T ss_pred cEEEEEcCCCEEEcCCCCC---------------------------CcceEEEEeCCcEEEEEcCCCcccccccCCcEEE
Confidence 4578899999999998731 2567999998764222111100 0 01334444
Q ss_pred EEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCeEEE
Q psy7941 93 THNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITW 172 (238)
Q Consensus 93 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W 172 (238)
. ..+.+|.|.+++.+|+|.|.|.+.+... ...+.|.|..++..+.. .... ....|.|.+.+.|.|.+.|
T Consensus 56 ~---~~~~sL~I~~v~~~DsG~Y~C~~~n~~~-~~~~~L~V~~~~~~p~i------~~~~-~~~~L~C~~~~~p~p~i~W 124 (171)
T 1ccz_A 56 D---TVSGSLTIYNLTSSDEDEYEMESPNITD-TMKFFLYVLEMVSKPMI------YWEC-SNATLTCEVLEGTDVELKL 124 (171)
T ss_dssp C---TTTCCEEECSCCGGGCEEEEEECTTCCS-CEEEEEEEECCCCCCEE------EEET-TTTEEEEECSSCSSCEEEE
T ss_pred e---CCCCeEEECCCChhhCceEEEEEeCCCC-cEEEEEEEECcCCCCEE------EEec-CCcEEEEEeCCCCCcEEEE
Confidence 2 2234899999999999999999976544 66677888765432211 1111 1138999999989999999
Q ss_pred EeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceE
Q psy7941 173 RREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRL 229 (238)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~ 229 (238)
++ ++..+... .. +.+.....+|.|.|+|.|.|..|.. +.++
T Consensus 125 ~~-~~~~l~~~------------~~--~~l~~~~~~~~g~Y~C~a~N~~~~~-~~~~ 165 (171)
T 1ccz_A 125 YQ-GKEHLRSL------------RQ--KTMSYQWTNLRAPFKCKAVNRVSQE-SEME 165 (171)
T ss_dssp EE-TTEEEEEE------------SS--SEEEEECSCCSSCEEEEEEETTEEE-EEEE
T ss_pred EE-CCEECcCC------------cc--eEEEEeccCCCceEEEEEEcccCcc-ccee
Confidence 99 55554321 11 2222234678999999999999833 4443
No 181
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=99.84 E-value=5.9e-20 Score=143.10 Aligned_cols=188 Identities=16% Similarity=0.137 Sum_probs=125.2
Q ss_pred EEEecCCEEEEeEEecCCCceeeeeeeee------eeecCCeEEecc---CCCCceEEEEeCCceeeeeeeeeEeecCcc
Q psy7941 19 TIAQGRDAIFTCVVNNLGGHRVSSSVTDT------HVNTGGSIVFPT---DSSAMKVAWIKADTKAVLAIHEHVITNNAR 89 (238)
Q Consensus 19 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~---~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~ 89 (238)
.+...|.+.|+|.+.+..+ .+...+... .+..|+.+.+.| +.|.+.+.|++++.....
T Consensus 73 ~v~~~D~G~Y~C~~~n~~~-~~~l~V~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~------------ 139 (363)
T 1wio_A 73 NLKIEDSDTYICEVEDQKE-EVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ------------ 139 (363)
T ss_dssp SCCGGGCEEEEEEETTEEE-EEEEEEEEEEESSCSSEESBSCEEEEEECCTTCCCCEEEECSSSCEEE------------
T ss_pred CCCHHHCEEEEEEEEECCC-cEEEEEEeCCCCCceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcccc------------
Confidence 4668899999999987532 111222111 245677777765 458889999998654210
Q ss_pred EEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc----
Q psy7941 90 LSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG---- 164 (238)
Q Consensus 90 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~---- 164 (238)
...+|.|.+++.+|+|.|+|.+.+... ....+.+.|..+|... ....+.+|+.+.|.|.+.+
T Consensus 140 --------~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~~-----~~~~~~~G~~v~l~C~~~~~~~~ 206 (363)
T 1wio_A 140 --------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS-----SIVYKKEGEQVEFSFPLAFTVEK 206 (363)
T ss_dssp --------ESSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSCSE-----EEEEEETBCCEEEECCCCCCCCS
T ss_pred --------cceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCCC-----CceEEecCCEEEEEEEEeccccc
Confidence 012899999999999999999976532 2233445555444332 3456788999999998877
Q ss_pred -ccCCeEEEEeCCCeeeEeecC--CCCCcceEEE-----------e--eceEEEEEeecCCCeEEEEEeeeC--CCCCcc
Q psy7941 165 -YPTPKITWRREDNKEIIVRSN--PPSSQKVFSV-----------E--SEVLSLTKVTRSEMGAYQCIAANG--VPPTVS 226 (238)
Q Consensus 165 -~p~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~-----------~--~~~l~i~~~~~~d~G~y~C~~~n~--~g~~~~ 226 (238)
.|.|.+.|++++ ..+..... .......... . ...|.|.++..+|+|.|+|.|.|. .| ..+
T Consensus 207 ~~P~p~i~W~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g-~~~ 284 (363)
T 1wio_A 207 LTGSGELWWQAER-ASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTG-KLH 284 (363)
T ss_dssp SCEEEEEEEEESS-CCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTC-CEE
T ss_pred CCCceeEEEecCC-CCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcC-eEE
Confidence 788999999944 33221000 0000111111 1 337999999999999999999999 88 557
Q ss_pred ceEEEEEE
Q psy7941 227 KRLMLHVH 234 (238)
Q Consensus 227 ~~~~l~V~ 234 (238)
..+.|.|.
T Consensus 285 ~~~~l~V~ 292 (363)
T 1wio_A 285 QEVNLVVM 292 (363)
T ss_dssp EEEEEEEE
T ss_pred EEEeEEEE
Confidence 88888776
No 182
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=99.84 E-value=3.9e-19 Score=135.40 Aligned_cols=166 Identities=14% Similarity=0.221 Sum_probs=115.5
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEE
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTH 94 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (238)
...+.+.+|+.+.|.|... .+.|.+.+.|+|++..+. ...++.+..
T Consensus 8 ~~~~~v~eg~~v~l~~~~~-------------------------~~~p~~~v~W~k~~~~i~---------~~~~~~~~~ 53 (312)
T 2y23_A 8 EVVVNVDDDGVISLNFECD-------------------------KMTPKSEFSWSKDYVSTE---------DSPRLEVES 53 (312)
T ss_dssp CCEEEECTTCCEEEEEECS-------------------------SCCTTCCEEEEETTEECT---------TCTTEEEEE
T ss_pred ceeEEEecCCeEEEEEEEe-------------------------CCCCCcEEEEEECCEECC---------CCCCEEEEE
Confidence 4467788999999999975 234577899999876532 244555554
Q ss_pred cCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEc------------CCcccccccCCceeecCCCcEEEEEEE
Q psy7941 95 NDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVI------------PPDISSEETSGDMMVPEGGSAKLVCKA 162 (238)
Q Consensus 95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~------------~~~~~~~~~~~~~~~~~g~~~~l~C~~ 162 (238)
. ....+|.|.+++.+|+|.|+|.+.+.........+.|.. +|.+.... .....+.+|+.+.|.|.+
T Consensus 54 ~-~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~s~~l~v~~~~~~~~~~~~~~~p~~~~~~-~~~~~v~~G~~v~l~C~~ 131 (312)
T 2y23_A 54 K-GNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKS-ELAVEILEKGQVRFWMQA 131 (312)
T ss_dssp E-TTEEEEEESSCCGGGCEEEEEEESSSCCCCEEEEECHHHHHHHHHHHHHHHSCBCCEEE-EEEEEECSSSCEEEEEEE
T ss_pred e-CCEEEEEECcCCccCCEEEEEEEEeCCCcEEEEEEEEeeeeeeecccccCCCCcccccc-CCceEEeeCCCEEEEEEE
Confidence 2 234499999999999999999998754444444455432 45443321 225678899999999999
Q ss_pred c-cccCCeEEEEeCCCeeeEeecCCCCCcceEEE----eeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 163 K-GYPTPKITWRREDNKEIIVRSNPPSSQKVFSV----ESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 163 ~-~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
. +.|.+.+.|++ ++..+.... ...... ....|.|.++..+|+|.|+|.+.+..+
T Consensus 132 ~~~~p~~~v~W~~-~~~~i~~~~-----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 190 (312)
T 2y23_A 132 EKLSGNAKVNYIF-NEKEIFEGP-----KYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKA 190 (312)
T ss_dssp SCCCSSCEEEEEE-TTEEECSSS-----SCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSC
T ss_pred EeCCCCCEEEEEE-CCEECeeCC-----cEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCc
Confidence 8 89999999999 555443211 111111 112499999999999999999986543
No 183
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=99.84 E-value=8.1e-20 Score=139.72 Aligned_cols=182 Identities=16% Similarity=0.141 Sum_probs=117.2
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
.+|.|...+. ..+.+|+++.|.|.+... .+.+.|+|++..+....
T Consensus 23 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~---------------------------~~~~~W~k~g~~~~~~~------- 67 (316)
T 3vh8_G 23 DKPFLSAWPS-AVVPRGGHVTLRCHYRHR---------------------------FNNFMLYKEDRIHIPIF------- 67 (316)
T ss_dssp -CCEEEEESC-SEEETTSCEEEEEEBTTB---------------------------CCSEEEEESSCSSSCHH-------
T ss_pred CCCEeeccCC-CccCCCCCEEEEEEccCC---------------------------CceEEEEeCCCccceee-------
Confidence 4677777776 568899999999998632 34699999876532110
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC----C--CcceeeEEEEEcCC-cccccccCCceeecCCCcEEEE
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN----P--MTKQMAFLEVVIPP-DISSEETSGDMMVPEGGSAKLV 159 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~----~--~~~~~~~l~v~~~~-~~~~~~~~~~~~~~~g~~~~l~ 159 (238)
........|.|.+++.+|+|.|+|.+.+. . ..+....|.|...+ .+.+...+. ..+.+|+.+.|.
T Consensus 68 -------~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~-~~v~~G~~v~L~ 139 (316)
T 3vh8_G 68 -------HGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPG-PLVKSGERVILQ 139 (316)
T ss_dssp -------HHCCBSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESC-SEEETTCCEEEE
T ss_pred -------cCCcceEEEEECCCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCC-CccCCCCeEEEE
Confidence 00011228999999999999999998642 1 12344566666432 221111222 237889999999
Q ss_pred EEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC----ccceEEEEEEe
Q psy7941 160 CKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT----VSKRLMLHVHC 235 (238)
Q Consensus 160 C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~----~~~~~~l~V~~ 235 (238)
|.+.+ +.+.+.|++++......... ...........|.|.++..+|+|.|+|.|.|..|.. .+..+.|.|..
T Consensus 140 C~~~~-~~~~~~w~k~g~~~~~~~~~---~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~ 215 (316)
T 3vh8_G 140 CWSDI-MFEHFFLHKEGISKDPSRLV---GQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTG 215 (316)
T ss_dssp EEESS-CCSEEEEEETTCCSCCEEEE---CEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEEC
T ss_pred EcCCC-CCcEEEEEECCCccccceee---eeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecC
Confidence 99954 56789999954432111000 000011234579999999999999999999988732 25666777753
No 184
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=99.83 E-value=1.1e-19 Score=136.03 Aligned_cols=185 Identities=18% Similarity=0.308 Sum_probs=115.2
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeeeee-e
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAIHE-H 82 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~~~-~ 82 (238)
...+..++..+.+.+|+++.|.|.+.. +.+.+.|+|.... . ...... .
T Consensus 27 ~~~v~~~p~~v~v~~G~~v~L~C~~~~---------------------------~~~~v~W~k~~~~~~~~~~~~~~~~~ 79 (270)
T 3qib_D 27 GMKVIQTPRYLVKGQGQKAKMRCIPEK---------------------------GHPVVFWYQQNKNNEFKFLINFQNQE 79 (270)
T ss_dssp -CCCEEECSEEEEETTSCEEEEEECCT---------------------------TCCEEEEEEECTTCCEEEEEEEETTE
T ss_pred ceeEEeCCCeEEEcCCCCEEEEEEecC---------------------------CCceEEEEEECCCCCcEEEEEECCCC
Confidence 356677888899999999999999742 2456999984321 1 111100 0
Q ss_pred Eeec---Cc-cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-----CcceeeEEEEEc------CCcccccccCCc
Q psy7941 83 VITN---NA-RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-----MTKQMAFLEVVI------PPDISSEETSGD 147 (238)
Q Consensus 83 ~~~~---~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-----~~~~~~~l~v~~------~~~~~~~~~~~~ 147 (238)
.... .. |+.+.......++|.|.+++.+|+|.|+|.+.+.. .....+.+.|.. +|.+... .+..
T Consensus 80 ~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~-~~~~ 158 (270)
T 3qib_D 80 VLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVF-EPSE 158 (270)
T ss_dssp EEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEE-ECCH
T ss_pred ceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEE-CCCc
Confidence 0000 11 77776545567899999999999999999997532 112334577765 3332221 1122
Q ss_pred eeecCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCC---------CCcceEEEeeceEEEEEeecCC-CeEEEE
Q psy7941 148 MMVPEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPP---------SSQKVFSVESEVLSLTKVTRSE-MGAYQC 215 (238)
Q Consensus 148 ~~~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~i~~~~~~d-~G~y~C 215 (238)
..+..|+.+.|.|.+.+ +|.+ .+.|++ ++..+....... ..... ......|.+.....+| .|.|+|
T Consensus 159 ~~~~~g~~v~L~C~~~g~~P~~~~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~~g~YtC 236 (270)
T 3qib_D 159 AEISHTQKATLVCLATGFYPDHVELSWWV-NGKEVHSGVCTDPQPLKEQPALNDSR-YALSSRLRVSATFWQNPRNHFRC 236 (270)
T ss_dssp HHHHHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEECTTEEECSSCEESCTTSSSCC-EEEEEEEEEEHHHHHSTTCEEEE
T ss_pred cccccCCceEEEEEecceeCCCeEEEEEE-CCEECCCCcccccccccccccCCCCC-EEEEEEEEEcHHHhccCCCeEEE
Confidence 23445899999999988 7767 899999 565543211000 00111 1122357777777777 999999
Q ss_pred EeeeCCC
Q psy7941 216 IAANGVP 222 (238)
Q Consensus 216 ~~~n~~g 222 (238)
.+.|...
T Consensus 237 ~v~~~~l 243 (270)
T 3qib_D 237 QVQFYGL 243 (270)
T ss_dssp EEEECCB
T ss_pred EEEecCC
Confidence 9999864
No 185
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A
Probab=99.83 E-value=2.8e-19 Score=131.44 Aligned_cols=185 Identities=18% Similarity=0.286 Sum_probs=115.9
Q ss_pred cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeeee---
Q psy7941 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIHE--- 81 (238)
Q Consensus 9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~--- 81 (238)
+.+..++..+.+.+|+++.|.|.+.. +.+.+.|+|.... .......
T Consensus 3 ~~v~~~p~~v~v~~G~~v~L~C~~~~---------------------------~~~~v~W~k~~~~~~~~~~~~~~~~~~ 55 (240)
T 3q5y_A 3 SGVVQSPRHIIKEKGGRSVLTCIPIS---------------------------GHSNVVWYQQTLGKELKFLIQHYEKVE 55 (240)
T ss_dssp CCCEEECSEEEEETTCCEEEEEECCT---------------------------TCCEEEEEEECTTSCCEEEEEEETTEE
T ss_pred cccccCcceeeecCCCcEEEEEEeCC---------------------------CCceEEEEEECCCCCCEEEEEEcCCcc
Confidence 45677888999999999999999752 2456999994211 1111110
Q ss_pred -eEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec--CC--CcceeeEEEEEc------CCcccccccCCceee
Q psy7941 82 -HVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT--NP--MTKQMAFLEVVI------PPDISSEETSGDMMV 150 (238)
Q Consensus 82 -~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~--~~--~~~~~~~l~v~~------~~~~~~~~~~~~~~~ 150 (238)
......+|+.+.......++|.|.+++.+|+|.|+|.+.+ .. .....+.+.|.. +|.+... .+....+
T Consensus 56 ~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~-~~~~~~~ 134 (240)
T 3q5y_A 56 RDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLF-EPSKAEI 134 (240)
T ss_dssp EEECSCCTTEEEEECTTSCEEEEECSCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEE-CCCHHHH
T ss_pred ccCcccCCeEEEEeCCCCEEEEEECcCChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEe-CCchhhc
Confidence 0011236787776556788999999999999999999962 21 122344566663 2322211 1222334
Q ss_pred cCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCCCCc----ceEEEeeceEEEEEeecCC-CeEEEEEeeeCCC
Q psy7941 151 PEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPPSSQ----KVFSVESEVLSLTKVTRSE-MGAYQCIAANGVP 222 (238)
Q Consensus 151 ~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d-~G~y~C~~~n~~g 222 (238)
..|+.+.|.|.+.| +|.+ .+.|++ ++..+.......... .......+.|.|.....+| .|.|+|.|.|...
T Consensus 135 ~~g~~v~L~C~~~g~~P~~~~v~W~~-~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~ 212 (240)
T 3q5y_A 135 ANKQKATLVCLARGFFPDHVELSWWV-NGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGL 212 (240)
T ss_dssp HHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred ccCCceEEEEEEeeEECCCeEEEEEE-CCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCC
Confidence 56889999999988 6666 899999 555543211000000 0001122358888888888 6699999999764
No 186
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H
Probab=99.83 E-value=6.4e-20 Score=135.98 Aligned_cols=181 Identities=17% Similarity=0.304 Sum_probs=109.6
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee----------E
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH----------V 83 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~----------~ 83 (238)
.+..+.+.+|+++.|.|.+.... .+.+.+.|+|............ .
T Consensus 6 ~p~~v~v~~G~~v~L~C~~~~~~------------------------~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~ 61 (253)
T 3liz_H 6 ESGGGLVQPGGSLKLSCAASGFT------------------------FSSFAMSWGRQTPDKRLELVATINSNGASTYYP 61 (253)
T ss_dssp EECCCEECTTCCEEEEEEEESSC------------------------GGGSCEEEEEECTTSCEEEEEEECTTSSCEECC
T ss_pred cCCCEEECCCCcEEEEEEeeCcc------------------------ccCceEEEEEECCCCCcEEEEEEecCCCccccC
Confidence 35567899999999999996421 1134699998542111100000 0
Q ss_pred eecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCC-----CcceeeEEEEE----cCCcccccccCCceeecCC
Q psy7941 84 ITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNP-----MTKQMAFLEVV----IPPDISSEETSGDMMVPEG 153 (238)
Q Consensus 84 ~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~-----~~~~~~~l~v~----~~~~~~~~~~~~~~~~~~g 153 (238)
....+|+.+.... .+.++|.|.+++.+|+|.|+|.+.+.. .....+.+.|. .+|.+... .....+..|
T Consensus 62 ~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~--~~~~~~~~g 139 (253)
T 3liz_H 62 DTVKGRFTISRDNAKNTLFLQMSSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPL--APGSAAQTN 139 (253)
T ss_dssp TTTTTTCEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEE--CC------C
T ss_pred cccCCcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEe--cCCcccCCC
Confidence 1124677776543 367789999999999999999996642 11233467775 22322211 222335579
Q ss_pred CcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 154 GSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 154 ~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
+.+.|.|.+.+ +|.+ .+.|++++................ ....+.|.|.....+| |.|+|.|.|..+
T Consensus 140 ~~v~L~C~~~g~~P~~~~v~W~~~~~~~~~~~~~~~~~~g~-~~~~s~L~i~~~~~~d-g~ytC~v~~~~~ 208 (253)
T 3liz_H 140 SMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDL-YTLSSSVTVPSSTWPS-ETVTCNVAHPAS 208 (253)
T ss_dssp CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTE-EEEEEEEEEETTSTTT-SCCEEEEEEGGG
T ss_pred CcEEEEEEEeeEeCCCeEEEEEeCCeecceEeCCccccCCe-EEEEEEEEEcHHHCCC-ceEEEEEEECCC
Confidence 99999999988 7777 899999543111100000000111 1222468888888888 999999999887
No 187
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=99.83 E-value=3.1e-22 Score=170.04 Aligned_cols=194 Identities=17% Similarity=0.355 Sum_probs=0.0
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee--
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT-- 85 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-- 85 (238)
+|.+...+. ..+.+|+++.|.|.+.. .|.+.+.|++++.............
T Consensus 550 ~p~i~~~p~-~~~~~G~~v~l~C~~~~--------------------------~p~~~v~W~k~~~~~~~~~~~~~~~~~ 602 (772)
T 3v2a_R 550 GPEITLQPD-MQPTEQESVSLWCTADR--------------------------STFENLTWYKLGPQPLPIHVGELPTPV 602 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceeeccCC-cccccCCceEEEEeccC--------------------------CCCCCcEEEEcCCcccccccCcccccc
Confidence 444444443 45779999999999853 3456799999876543211111000
Q ss_pred --------cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcc--eeeEEEE--EcCCcccccccCCceeecC
Q psy7941 86 --------NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTK--QMAFLEV--VIPPDISSEETSGDMMVPE 152 (238)
Q Consensus 86 --------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~--~~~~l~v--~~~~~~~~~~~~~~~~~~~ 152 (238)
......+........+|.|.+++.+|+|.|+|.+.|. +... ....+.| ..+|.+... .....+.+
T Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~P~~~~~--~~~~~v~~ 680 (772)
T 3v2a_R 603 CKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGN--LENQTTSI 680 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccCCCEeecC--CCceEEeC
Confidence 0000000111112346999999999999999999873 2221 2334444 445555432 34466888
Q ss_pred CCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEE
Q psy7941 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH 232 (238)
Q Consensus 153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~ 232 (238)
|+.+.|.|.+.|.|.|.+.|++ ++..+.... .......++.|.|.++..+|+|.|+|.|.|..|.. +.++.|.
T Consensus 681 g~~~~l~C~~~g~P~p~v~W~k-~g~~l~~~~-----~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 753 (772)
T 3v2a_R 681 GESIEVSCTASGNPPPQIMWFK-DNETLVEDS-----GIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCA-KVEAFFI 753 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCEEEEEEeCccCCCeEEEEE-CCeECcCCC-----CeEEcCCCcEEEECcCCHHHCEEEEEEEEeCCcce-eEEEEEE
Confidence 9999999999999999999999 444443221 11112235689999999999999999999999955 7789999
Q ss_pred EEeec
Q psy7941 233 VHCTY 237 (238)
Q Consensus 233 V~~~p 237 (238)
|..+|
T Consensus 754 V~~~p 758 (772)
T 3v2a_R 754 IEGAQ 758 (772)
T ss_dssp -----
T ss_pred EECCC
Confidence 98876
No 188
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=99.83 E-value=2.6e-19 Score=142.76 Aligned_cols=188 Identities=19% Similarity=0.257 Sum_probs=117.4
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC-ce-ee--eeee-eeEe
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD-TK-AV--LAIH-EHVI 84 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~-~~-~~--~~~~-~~~~ 84 (238)
.+...+..+.+.+|+++.|.|.+...... ...+.+.|+|++ +. .. .... ....
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~----------------------~~~~~v~W~k~~~g~~~~~~~~~~~~~~~ 60 (438)
T 1qgc_4 3 VLTQSPASLAVSLGQRATISCRASESVDS----------------------SGHSFMHWYQQKPGQPPKLLIYRASNLES 60 (438)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCEE----------------------TTEECEEEEEECTTSCCEEEESSSSCBCS
T ss_pred ceEecCCeEEeeCCCCEEEEEecCCCccc----------------------CCcceEEEEEECCCCCcEEEEEECcccCC
Confidence 45677888999999999999998532110 001369999964 21 11 1000 0001
Q ss_pred ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEc---CCcccccccCCceeecCCCcEEEE
Q psy7941 85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVI---PPDISSEETSGDMMVPEGGSAKLV 159 (238)
Q Consensus 85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~---~~~~~~~~~~~~~~~~~g~~~~l~ 159 (238)
....|+.... ....++|.|.+++.+|+|.|+|.+.+.... ...+.+.|.. +|.+... .......+|+.+.|.
T Consensus 61 ~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~--~~~~~~~~g~~~~l~ 137 (438)
T 1qgc_4 61 GIPDRFSGSG-SRTDFTLTIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIF--PPSSEQLTSGGASVV 137 (438)
T ss_dssp SCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEE--CCCHHHHHTTEEEEE
T ss_pred CccCcEEEEc-cCCcEEEEeCCCcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEec--CCChhhccCCceEEE
Confidence 1235666654 345568999999999999999999775432 3345666653 3333221 111123357799999
Q ss_pred EEEcc-ccCC-eEEEEeCCCeeeEee----cCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941 160 CKAKG-YPTP-KITWRREDNKEIIVR----SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP 223 (238)
Q Consensus 160 C~~~~-~p~~-~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~ 223 (238)
|.+.+ .|.+ .+.|++ ++..+... ..............+.|.|..+..+|.|.|+|.|.|..|.
T Consensus 138 C~~~g~~p~~~~v~W~k-~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~ 206 (438)
T 1qgc_4 138 CFLNNFYPKDINVKWKI-DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 206 (438)
T ss_dssp EEEEEEBSSCEEEEEEE-TTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCS
T ss_pred EEEccccCCCcEEEEEE-CCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccC
Confidence 99987 7777 999999 55544221 0000000111122347999999999999999999998874
No 189
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.83 E-value=1.7e-20 Score=137.37 Aligned_cols=192 Identities=17% Similarity=0.247 Sum_probs=114.7
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--eee--eeee-ee
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KAV--LAIH-EH 82 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~~--~~~~-~~ 82 (238)
.+.+.. +..+.+.+|+++.|.|.+.+... +...+.|+|++. ... .... ..
T Consensus 20 ~~~v~~-p~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~k~~~~~~~~~~~~~~~~~ 74 (234)
T 2j6e_L 20 QSVLTQ-PPSASGTPGQRVTISCSGSSSNI------------------------GSNYVYWYQQLPGTAPKLLIYRNNQR 74 (234)
T ss_dssp CCCCBC-CSCCCBCTTCEEEEEEECCTTTT------------------------TTSCCEEEEECSSSCCEEEEBTTTBC
T ss_pred ccEEeC-CCcEEeeCCCcEEEEEEecCCCC------------------------CCCeEEEEEecCCCCcEEEEECcccc
Confidence 344445 77888999999999999864211 011599999642 111 0000 00
Q ss_pred EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC----cceeeEEEEEc----CCcccccccCCceeecCCC
Q psy7941 83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM----TKQMAFLEVVI----PPDISSEETSGDMMVPEGG 154 (238)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~l~v~~----~~~~~~~~~~~~~~~~~g~ 154 (238)
......|+.... ....++|.|.+++.+|+|.|+|.+.+... ....+.+.|.. +|.+... ........|+
T Consensus 75 ~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~--~~~~~~~~g~ 151 (234)
T 2j6e_L 75 PSGVPDRFSGSK-SGTSASLAISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLF--PPSSEELQAN 151 (234)
T ss_dssp CSSSCTTEEEEE-ETTEEEEEEESCCSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEE--CCCHHHHTTS
T ss_pred CCCccccEEEEe-cCCeEEEEECCCCHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCccccc--CCChhHhcCC
Confidence 011235676654 34566999999999999999999977543 11233455532 3333221 1111234578
Q ss_pred cEEEEEEEccc-cC-CeEEEEeCCCeeeEeecC---CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceE
Q psy7941 155 SAKLVCKAKGY-PT-PKITWRREDNKEIIVRSN---PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRL 229 (238)
Q Consensus 155 ~~~l~C~~~~~-p~-~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~ 229 (238)
.+.|.|.+.|. |. +.+.|++ ++..+..... ............+.|.|..+..+|.|.|+|.|.|..+. ..+++
T Consensus 152 ~v~L~C~~~g~~p~~~~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~-~~~~~ 229 (234)
T 2j6e_L 152 KATLVCLISDFFPGAVTVAWKA-DGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST-VEKTV 229 (234)
T ss_dssp CCCEEECCCBCSSCCCEEEEEE-TTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBC-CCEEE
T ss_pred ceEEEEEEEEEcCCceEEEEEE-CCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCc-eEEec
Confidence 99999999884 44 3899999 5554421100 00000000112236888888899999999999998773 34443
No 190
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Probab=99.83 E-value=6.3e-19 Score=128.96 Aligned_cols=182 Identities=18% Similarity=0.255 Sum_probs=107.9
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e---eeeeee---eeEe--e
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K---AVLAIH---EHVI--T 85 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~---~~~~~~---~~~~--~ 85 (238)
+..+.+.+|+++.|.|.+..... ..+.+.|||+.. . ...... .... .
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~ 62 (232)
T 1dn0_B 7 WGAGLLKPSETLSLTCAVYGGSF------------------------SDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPS 62 (232)
T ss_dssp ECCCEECTTSCEEEEEEEESSCC------------------------SSCCEEEEEECTTSCCEEEEEECTTCCEEECTT
T ss_pred CCCEEEeCCCcEEEEEEEccccC------------------------CCceEEEEEeCCCCCeEEEEEEecCCceeeCCc
Confidence 45578999999999999974310 134699999642 1 111110 0011 1
Q ss_pred cCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEec-CC--C----cceeeEEEEEcC----CcccccccCCceeecCC
Q psy7941 86 NNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNT-NP--M----TKQMAFLEVVIP----PDISSEETSGDMMVPEG 153 (238)
Q Consensus 86 ~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~-~~--~----~~~~~~l~v~~~----~~~~~~~~~~~~~~~~g 153 (238)
..+|+.+.... ...++|.|.+++.+|+|.|+|.+.+ .. . ....+.|.|... |.+.... +. ..+..|
T Consensus 63 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-p~-~~~~~g 140 (232)
T 1dn0_B 63 LKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLV-SC-ENSPSD 140 (232)
T ss_dssp TTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEE-CC-------
T ss_pred cCCeEEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEec-cc-cccCCC
Confidence 24688876543 4678999999999999999999973 11 1 123456777652 2222111 11 123467
Q ss_pred -CcEEEEEEEcc-ccCC-eEEEEeCCCeeeEe-ecCCC-CCcceEEEeeceEEEEEeec--CCCeEEEEEeeeCCCC
Q psy7941 154 -GSAKLVCKAKG-YPTP-KITWRREDNKEIIV-RSNPP-SSQKVFSVESEVLSLTKVTR--SEMGAYQCIAANGVPP 223 (238)
Q Consensus 154 -~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~-~~~~~-~~~~~~~~~~~~l~i~~~~~--~d~G~y~C~~~n~~g~ 223 (238)
+.+.|.|.+.+ +|.| .+.|++.++..+.. ..... ...... ...+.|.|..... +|.|.|+|.|.|..+.
T Consensus 141 ~~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~ 216 (232)
T 1dn0_B 141 TSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKY-AATSQVLLPSKDVMAGTDEHVVCKVQHPNGN 216 (232)
T ss_dssp CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEE-EEEEEEEECTTCC---CCCEEEEEEECTTCC
T ss_pred CCcEEEEEEEEEEeCCCeEEEEEcCCCCceeeEEECCccccCCcE-EEEEEEEEcHHHhcccCCCeEEEEEEeCCCC
Confidence 89999999988 4877 99999944443321 00000 001111 1234677777665 7899999999999883
No 191
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=99.83 E-value=7.5e-21 Score=139.20 Aligned_cols=185 Identities=18% Similarity=0.251 Sum_probs=95.0
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-eeeeeee----ee
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-KAVLAIH----EH 82 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~~~~~~----~~ 82 (238)
.+.+...+..+.+.+|+++.|.|.+... +.+.+.|+|++. ....... ..
T Consensus 23 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~--------------------------~~~~v~W~~~~~~~~~~~~~~~~~~~ 76 (233)
T 3bqu_C 23 ETTVTQSPASLSMSIGEKVTIRCITSTD--------------------------IDDDMNWYQQKPGEPPRLLISDGNTL 76 (233)
T ss_dssp CCCEEEECSBC-------CCEEEEEEEE--------------------------ESSCEEEEEECTTSCCEEEECTTSCB
T ss_pred ceeEEEcCCeEEEecCCCEEEEEecCCc--------------------------CCCeEEEEEECCCCCcEEEEEcCCcc
Confidence 4556677888899999999999998642 234599998642 1110000 00
Q ss_pred EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEc---CCcccccccCCceeecCCCcEE
Q psy7941 83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVI---PPDISSEETSGDMMVPEGGSAK 157 (238)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~---~~~~~~~~~~~~~~~~~g~~~~ 157 (238)
......|+.... ....++|.|.+++.+|+|.|+|.+.+.... ...+.+.|.. +|.+... ........|+.+.
T Consensus 77 ~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~--~~~~~~~~g~~v~ 153 (233)
T 3bqu_C 77 RPGVPSRFSSSG-YGTDFVFTIENMLSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIF--PPSSEQLTSGGAS 153 (233)
T ss_dssp CTTSCTTCCCCE-EEEEEEEC-----CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEE--CCCHHHHHTTEEE
T ss_pred CCCCCccEEeec-cCCEEEEEECCCCHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEe--CCCHHhhcCCceE
Confidence 001123443322 223448999999999999999999764321 2223456654 3333221 1111233588999
Q ss_pred EEEEEccc-cCC-eEEEEeCCCeeeEee----cCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 158 LVCKAKGY-PTP-KITWRREDNKEIIVR----SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 158 l~C~~~~~-p~~-~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
|.|.+.|. |.+ .+.|++ ++..+... ..............+.|.|.....+|.|.|+|.|.|...
T Consensus 154 L~C~~~g~~p~~~~v~W~k-~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~ 223 (233)
T 3bqu_C 154 VVCFLNNFYPKDINVKWKI-DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS 223 (233)
T ss_dssp EEEEEEEEBSSCEEEEEEE-C-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred EEEEEccccCCceEEEEEE-CCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 99999884 444 799999 44433221 000000111112234688888888999999999999765
No 192
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=99.82 E-value=5.4e-20 Score=138.81 Aligned_cols=171 Identities=11% Similarity=0.202 Sum_probs=108.1
Q ss_pred eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCC
Q psy7941 18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDA 97 (238)
Q Consensus 18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (238)
+.+.+|+++.|.|.+.+ |.+.+.|++.+....... ......
T Consensus 105 ~~v~~G~~v~l~C~~~~---------------------------p~~~v~w~~~~~~~~~~~---~~~~~~--------- 145 (289)
T 3mjg_X 105 IFLTEITEITIPCRVTD---------------------------PQLVVTLHEKKGDVALPV---PYDHQR--------- 145 (289)
T ss_dssp EEESSCCCEEECCCBSC---------------------------TTSCEEEEESSCCSCCCC---CEETTT---------
T ss_pred EEeecCCeEEEEeEcCC---------------------------CCceEEEEeCCCCCccce---eecCCc---------
Confidence 67889999999999852 345688888642211100 000000
Q ss_pred CeEEEEEcccCcccCeEEEEEEecCCCcc--eeeEEEEEc--CCcccccccCCceeecCCCcEEEEEEEccccCCeEEEE
Q psy7941 98 NTWTLNIRSVRREDRGYYMCQVNTNPMTK--QMAFLEVVI--PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWR 173 (238)
Q Consensus 98 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~l~v~~--~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~ 173 (238)
.+. ...|+|.|+|.+.+..... ....+.|.. +|.+... +....+.+|+.+.|.|.+.+.|.|.+.|+
T Consensus 146 ---~~~----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~--~~~~~v~~G~~v~L~C~~~g~p~p~v~W~ 216 (289)
T 3mjg_X 146 ---GFS----GIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVN--AVQTVVRQGENITLMCIVIGNEVVNFEWT 216 (289)
T ss_dssp ---EEE----ECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEE--ESCSEEETTSCEEEEEEEESCSSBEEEEE
T ss_pred ---Cee----eeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEe--CCcceeEcCCCEEEEEEECCCCCcceEEE
Confidence 111 3579999999997654322 233455554 3444332 23356889999999999999999999999
Q ss_pred eCCCeeeEeecC-CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 174 REDNKEIIVRSN-PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 174 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
+++......... ..............|.|.++..+|.|.|+|.|.|..|. .+.++.|.|...|
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~v~~~~ 280 (289)
T 3mjg_X 217 YPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVND-HQDEKAINITVVE 280 (289)
T ss_dssp CTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTT-EEEEEEEEEEEEC
T ss_pred cCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCC-ceeEEEEEEEEEe
Confidence 743221100000 00000000123457999999999999999999999994 4888888888765
No 193
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=99.82 E-value=1.1e-19 Score=132.56 Aligned_cols=181 Identities=20% Similarity=0.284 Sum_probs=108.3
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e-e--eeeee---eeEe--e
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K-A--VLAIH---EHVI--T 85 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~-~--~~~~~---~~~~--~ 85 (238)
+..+.+.+|+++.|.|.+...... ...+.+.|+|+.. . . +.... .... .
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~----------------------~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~ 64 (228)
T 3bae_H 7 SGPGLLKPSQTLSLTCSFSGFSIR----------------------TSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPS 64 (228)
T ss_dssp ECCSEECTTCCEEEEEEEESSCHH----------------------HHCCEEEEEEEETTCCCEEEEEECTTSCEEECTT
T ss_pred CCceeecCCCeEEEEEEEeCcccC----------------------CCceeEEEEEECCCCCeEEEEEEecCCceeeCcc
Confidence 566789999999999999743210 0015699998531 1 1 11110 0001 1
Q ss_pred cCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCC----------cceeeEEEEEc----CCcccccccCCceee
Q psy7941 86 NNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPM----------TKQMAFLEVVI----PPDISSEETSGDMMV 150 (238)
Q Consensus 86 ~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----------~~~~~~l~v~~----~~~~~~~~~~~~~~~ 150 (238)
..+|+.+.... ...++|.|.+++.+|+|.|+|.+.+... ....+.|.|.. +|.+... .....+
T Consensus 65 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~--~~~~~~ 142 (228)
T 3bae_H 65 LESRLTISKDTSRDMVFMKITSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPL--APVCGD 142 (228)
T ss_dssp TGGGEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEE--CC----
T ss_pred cCCcEEEEEcCCCCeEEEEEcCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEe--cccccc
Confidence 24678776543 3567999999999999999999976431 11235677763 2322221 111235
Q ss_pred cCCCcEEEEEEEccc-cCC-eEEEEeCCCee-eEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 151 PEGGSAKLVCKAKGY-PTP-KITWRREDNKE-IIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 151 ~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
..|+.+.|.|.+.+. |.| .+.|++++... ......... ... ....+.|.|..+..++ |.|+|.|.|..|
T Consensus 143 ~~g~~~~l~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~-~~~-~~~~s~L~i~~~~~d~-g~YtC~~~n~~~ 214 (228)
T 3bae_H 143 TTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQ-SDL-YTLSSSVTVTSSTWPS-ESITCNVAHPAS 214 (228)
T ss_dssp -CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEEEEEEEE-TTE-EEEEEEEEEETTTTTT-SCCEEEEEEGGG
T ss_pred cCCCCEEEEEEEccEeCCCEEEEEeeCCcccCceEcCceeC-CCc-EEEEEEEEEEhhhcCC-CcEEEEEEECCC
Confidence 679999999999884 877 99999954321 010000000 011 1123468887777755 999999999987
No 194
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}
Probab=99.82 E-value=9.2e-19 Score=131.60 Aligned_cols=186 Identities=17% Similarity=0.268 Sum_probs=115.5
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e-e--eeeeee--
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K-A--VLAIHE-- 81 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~-~--~~~~~~-- 81 (238)
.+.+...+..+.+.+|+++.|.|.+.+. +.+.+.|+|++. . . ......
T Consensus 24 ~~~v~~~p~~v~v~~G~~v~L~C~~~~~--------------------------~~~~v~W~r~~~~~~~~~~~~~~~~~ 77 (279)
T 2wbj_D 24 GAVVSQHPSWVISKSGTSVKIECRSLDF--------------------------QATTMFWYRQFPKQSLMLMATSNEGS 77 (279)
T ss_dssp CCCEEEECSEEEEETTSCEEEEEEESSS--------------------------CEEEEEEEEECSSSCCEEEEEEESSS
T ss_pred cceEEeCCCeEEecCCCeEEEEEEeCCC--------------------------CCCeEEEEEeCCCCCeEEEEEEecCC
Confidence 5677788899999999999999998532 245699999642 1 1 111100
Q ss_pred -eEe---ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-------CcceeeEEEEEc------CCccccccc
Q psy7941 82 -HVI---TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-------MTKQMAFLEVVI------PPDISSEET 144 (238)
Q Consensus 82 -~~~---~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-------~~~~~~~l~v~~------~~~~~~~~~ 144 (238)
... ...+|+.+.......++|.|.+++.+|+|.|+|.+.+.. .....+.|.|.. +|.+... .
T Consensus 78 ~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~-~ 156 (279)
T 2wbj_D 78 KATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVF-E 156 (279)
T ss_dssp CCCCCSSSCSSSEEEEECSSSEEEEEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEE-E
T ss_pred cceecCCccCCcEEEEeCCCCEEEEEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEE-C
Confidence 000 124688877655667899999999999999999997731 012334677764 2333221 1
Q ss_pred CCceeecCCCcEEEEEEEccc-cC-CeEEEEeCCCeeeEeecCCC---------CCcceEEEeeceEEEEEeecCC-CeE
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGY-PT-PKITWRREDNKEIIVRSNPP---------SSQKVFSVESEVLSLTKVTRSE-MGA 212 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~-p~-~~~~W~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~i~~~~~~d-~G~ 212 (238)
+....+..|+.+.|.|.+.|. |. +.+.|++ ++..+....... ..... ....+.|.|......| .|.
T Consensus 157 ~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~~~~ 234 (279)
T 2wbj_D 157 PSEAEISHTQKATLVCLATGFYPDHVELSWWV-NGKEVHSGVSTDPQPLKEQPALNDSR-YSLSSRLRVSATFWQNPRNH 234 (279)
T ss_dssp CCHHHHHHHSCCEEEEEEEEEBSSCEEEEEEE-TTEECCTTEEECSSCEESSTTSTTCC-EEEEEEEECCSTTTTCTTCE
T ss_pred CCcccccCCCceEEEEEEeeEcCCCcEEEEEE-CCEECCCCcccccccccccccCCCCc-EEEEEEEEEChHHhccCCCE
Confidence 111223468899999999885 54 6999999 555442111000 01111 1122246666555544 568
Q ss_pred EEEEeeeCCC
Q psy7941 213 YQCIAANGVP 222 (238)
Q Consensus 213 y~C~~~n~~g 222 (238)
|+|.|.|...
T Consensus 235 YtC~v~n~~~ 244 (279)
T 2wbj_D 235 FRCQVQFYGL 244 (279)
T ss_dssp EEEEEEECCB
T ss_pred EEEEEEeCCC
Confidence 9999999865
No 195
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.81 E-value=3.5e-19 Score=137.77 Aligned_cols=181 Identities=18% Similarity=0.292 Sum_probs=113.4
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--ceeee--eee------eeE
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKAVL--AIH------EHV 83 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~~~--~~~------~~~ 83 (238)
.+..+.+.+|+++.|.|.+.+.. .+.+.+.|+|+. ..... ... ...
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~------------------------~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~ 61 (344)
T 1za6_B 6 QSGAEVVKPGASVKISCKASGYT------------------------FTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYN 61 (344)
T ss_dssp ECCCEEECTTCCEEEEEEEESSC------------------------TTSSCEEEEEECSSSCEEEEEEEETTTTEEEEC
T ss_pred CCCCeEEeCCCcEEEEEEcCCcc------------------------ccccEEEEEEECCCCCcEEEEEEecCCCceEEC
Confidence 45567899999999999997431 124569999973 22111 000 000
Q ss_pred eecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEc----CCcccccccCCceeecCCCcEE
Q psy7941 84 ITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVI----PPDISSEETSGDMMVPEGGSAK 157 (238)
Q Consensus 84 ~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~----~~~~~~~~~~~~~~~~~g~~~~ 157 (238)
....+|+.+.... ...++|.|.+++.+|+|.|+|.+.+... ....+.|.|.. +|.+... .....+..|+.+.
T Consensus 62 ~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~--~~~~~~~~g~~v~ 139 (344)
T 1za6_B 62 ERFKGKATLTADTSASTAYVELSSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPL--APSSKSTSGGTAA 139 (344)
T ss_dssp TTTBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEE--CCSCTTTSSSEEE
T ss_pred cccCCcEEEEEecCCCEEEEEECCCCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEc--cccccccCCCcEE
Confidence 1124677776543 3567999999999999999999977432 23345677763 2222211 1123357899999
Q ss_pred EEEEEccc-cC-CeEEEEeCCCeeeEeecCCC--CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941 158 LVCKAKGY-PT-PKITWRREDNKEIIVRSNPP--SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP 223 (238)
Q Consensus 158 l~C~~~~~-p~-~~~~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~ 223 (238)
|.|.+.|. |. +.+.|+++ +..+....... ..... ....+.|.|..+..+| |.|+|.|.|..+.
T Consensus 140 L~C~~~g~~P~~~~v~W~k~-g~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~ 206 (344)
T 1za6_B 140 LGCLVKDYFPEPVTVSWNSG-ALTSGVHTFPAVLQSSGL-YSLSSVVTVPSSSLGT-QTYICNVNHKPSN 206 (344)
T ss_dssp EEEEEEEEBSSCCCEEETTT-TBCTTEEECCCEECTTSC-EEEEEEEEEETTHHHH-BCEEEEEEEGGGT
T ss_pred EEEEEeeEECCCeEEEEecC-CccCceeECCCeECCCCC-EEEEEEEEEcHHHcCC-CcEEEEEEeCCCC
Confidence 99999886 65 69999994 43321110000 00111 1123368888888878 9999999998873
No 196
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=99.81 E-value=3.2e-18 Score=137.97 Aligned_cols=190 Identities=18% Similarity=0.307 Sum_probs=117.1
Q ss_pred eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eeeee------e
Q psy7941 12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLAIH------E 81 (238)
Q Consensus 12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~~~------~ 81 (238)
+..+..+.+.+|+++.|.|.+.... .+.+.+.|||+.. .. +.... .
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~~~------------------------~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~ 60 (475)
T 1iga_A 5 LEQSGAEVKKPGASVKVSCKASGYS------------------------FTSYGLHWVRQAPGQRLEWMGWISAGTGNTK 60 (475)
T ss_pred eccCCcEEEeCCCCEEEEEEecCCC------------------------CCCceEEEEEeCCCCCcEEEEEEecCCCcee
Confidence 4567788999999999999986421 0134699999642 11 11100 0
Q ss_pred eEeecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCC-------cceeeEEEEEc----CCcccccccCCcee
Q psy7941 82 HVITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPM-------TKQMAFLEVVI----PPDISSEETSGDMM 149 (238)
Q Consensus 82 ~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-------~~~~~~l~v~~----~~~~~~~~~~~~~~ 149 (238)
......+|+.+.... ...++|.|.+++.+|+|.|+|.+.+... ....+.|.|.. +|.+.... . ..
T Consensus 61 ~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~-~--~~ 137 (475)
T 1iga_A 61 YSQKFRGRVTFTRDTSATTAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLS-L--CS 137 (475)
T ss_pred cCcccCCceEEEEcCCCCeEEEEECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecC-c--cc
Confidence 001124677766543 3567999999999999999999976532 12344666663 22222211 1 12
Q ss_pred ecCCCcEEEEEEEccc-cC-C-eEEEEeCCCeeeEeecCCC---CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941 150 VPEGGSAKLVCKAKGY-PT-P-KITWRREDNKEIIVRSNPP---SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP 223 (238)
Q Consensus 150 ~~~g~~~~l~C~~~~~-p~-~-~~~W~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~ 223 (238)
+.+|+.+.|.|.+.|. |. | .+.|++++ .......... ..... ....+.|.|..+..+|.|.|+|.|.|..+.
T Consensus 138 ~~~g~~v~L~C~~~g~~P~~p~~v~W~~~~-~~~~~~~~~~~~~~~~g~-~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 215 (475)
T 1iga_A 138 TQPDGNVVIACLVQGFFPQEPLSVTWSESG-QGVTARNFPPSQDASGDL-YTTSSQLTLPATQCLAGKSVTCHVKHYTNP 215 (475)
T ss_pred cCCCCeEEEEEEEeeecCCCceEEEEcCCC-cccceEeCCceecCCCCc-EEEEEEEEechhHcCCCceEEEEEEECCCC
Confidence 3689999999999985 66 5 99999844 2211111000 00111 112235888888888999999999999874
Q ss_pred CccceEE
Q psy7941 224 TVSKRLM 230 (238)
Q Consensus 224 ~~~~~~~ 230 (238)
.....+.
T Consensus 216 ~~~~~v~ 222 (475)
T 1iga_A 216 SQDVTVP 222 (475)
T ss_pred ceeeeEe
Confidence 3344444
No 197
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=99.81 E-value=3.6e-19 Score=128.04 Aligned_cols=180 Identities=13% Similarity=0.224 Sum_probs=104.9
Q ss_pred eeccCceeE-EEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee-eEeecCc
Q psy7941 11 FLYPLENVT-IAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE-HVITNNA 88 (238)
Q Consensus 11 ~~~~~~~~~-v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~ 88 (238)
++.+|.... +.+|+++.|.|.+.+.... .+.+.+.|+|++..+...... .....++
T Consensus 5 ~~~~P~~~~~v~~G~~v~L~C~~~g~~~~----------------------p~~~~v~W~k~~~~~~~~~~~~~~~~~~~ 62 (207)
T 2vol_A 5 FIFPPKPKDVLTITLTPKVTCVVVDISKD----------------------DPEVQFSWFVDDVEVHTAQTKPREEQFNS 62 (207)
T ss_dssp EEECCCHHHHHSTTSCCEEEEEEEEECTT----------------------CCCCEEEEEETTEEECCCEEECCCEETTT
T ss_pred EEeCcChhhhhccCCceEEEEEEeCcccC----------------------CCceEEEEEECCccccccccCCCcCcCCC
Confidence 344555444 7899999999999743100 013479999988554321110 0011223
Q ss_pred cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc-ceeeEE----EEEcCCcccccccCCceeecCCCcEEEEEEEc
Q psy7941 89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT-KQMAFL----EVVIPPDISSEETSGDMMVPEGGSAKLVCKAK 163 (238)
Q Consensus 89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l----~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~ 163 (238)
++... .+|.|.+++.+|+|.|+|.+.+.... .....+ .+..+|.+....... ....|+.+.|.|.+.
T Consensus 63 ~~~~~------~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~--~~~~g~~~~L~C~~~ 134 (207)
T 2vol_A 63 TFRSV------SELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPK--EQMAKDKVSLTCMIT 134 (207)
T ss_dssp EEEEE------EEEECCHHHHHTTCCEEEEEECTTCSSCEEEEECCCCCCCBCCEEEEECCCT--GGGSSSEEEEEEEEE
T ss_pred cEEEE------EEEEEehhHcCCCCEEEEEEEccCCCCceEEEeccCCCCCcCCeEEEeCCCH--HHhcCCceEEEEEEe
Confidence 34332 28999999999999999999875442 122233 233455543322221 123588999999999
Q ss_pred c-ccCC-eEEEEeCCCeeeEeecCCC---CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 164 G-YPTP-KITWRREDNKEIIVRSNPP---SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 164 ~-~p~~-~~~W~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
| +|.+ .+.|++ ++..+....... ..... ....+.|.+.....+|.|.|+|.|.|...
T Consensus 135 g~~P~~~~v~W~k-~g~~l~~~~~~~~~~~~~g~-~~~~s~l~i~~~~~~~~g~ytC~a~n~~l 196 (207)
T 2vol_A 135 DFFPEDITVEWES-NGQPAENYKNTQPIMDTDGS-YFVYSKLNVQKSNWEAGNTFTCSVLHEGL 196 (207)
T ss_dssp EEBSSCCEEEEEE-TTEECSCEEECCCEECTTSC-EEEEEEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred eEECCCCEEEEEE-CCEeccCcccCCceECCCCC-EEEEEEEEECHHHcCCCCEEEEEEECCCC
Confidence 8 5553 899999 554432111000 00001 11122455555556789999999999875
No 198
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=99.81 E-value=2.5e-19 Score=129.87 Aligned_cols=184 Identities=15% Similarity=0.233 Sum_probs=105.7
Q ss_pred cccceeccCceeE--EEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee-eE
Q psy7941 7 FEPDFLYPLENVT--IAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE-HV 83 (238)
Q Consensus 7 ~~p~~~~~~~~~~--v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~-~~ 83 (238)
.+|.+...+.... +.+|+++.|.|.+.+... +.+.+.+.|+|++..+...... ..
T Consensus 8 ~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~----------------------~p~~~~v~W~k~~~~~~~~~~~~~~ 65 (218)
T 2rgs_A 8 GGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSE----------------------DDPDVQISWFVNNVEVHTAQTQTHR 65 (218)
T ss_dssp -CCEEEEECCCHHHHHCTTSCCEEEEEEEEECT----------------------TSCCEEEEEEETTEEECCCEEEEEE
T ss_pred CCCEEEEECcCHHHhhccCCCeeEEEEEcCCcc----------------------CCCceEEEEEECCccccCccccccc
Confidence 3455544444444 789999999999974310 0012579999988654321111 11
Q ss_pred eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcc-eeeEE----EEEcCCcccccccCCceeecCCCcEEE
Q psy7941 84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK-QMAFL----EVVIPPDISSEETSGDMMVPEGGSAKL 158 (238)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l----~v~~~~~~~~~~~~~~~~~~~g~~~~l 158 (238)
...++++... .+|.|.+++.+|+|.|+|.+.+..... ....+ .+..+|.+...... .....|+.+.|
T Consensus 66 ~~~~~~~~~~------~~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~--~~~~~g~~~~L 137 (218)
T 2rgs_A 66 EDYNSTIRVV------STLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPP--AEQLSRKDVSL 137 (218)
T ss_dssp ETTTTEEEEE------EEEECCHHHHHTTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCC--GGGTTSSEEEE
T ss_pred ccCCCeEEEE------EEEEEcHHHcCCCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCC--hHHhcCCceEE
Confidence 1123344332 289999999999999999998764322 12222 22344544332211 11235899999
Q ss_pred EEEEcc-ccCC-eEEEEeCCCeeeEeecCCC---CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 159 VCKAKG-YPTP-KITWRREDNKEIIVRSNPP---SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 159 ~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
.|.+.| +|.+ .+.|++ ++..+....... ..... ......|.+.....+|.|.|+|.|.|...
T Consensus 138 ~C~~~g~~P~~~~v~W~k-~g~~~~~~~~~~~~~~~~gt-~~~~s~l~v~~~~~~d~g~YtC~a~n~~l 204 (218)
T 2rgs_A 138 TCLVVGFNPGDISVEWTS-NGHTEENYKDTAPVLDSDGS-YFIYSKLNMKTSKWEKTDSFSCNVRHEGL 204 (218)
T ss_dssp EEEEEEEBSSCCEEEEEE-TTEEECCEEECCCEECTTSC-EEEEEEEEEEHHHHHHCSCEEEEEECTTS
T ss_pred EEEEEeeeCCCcEEEEEE-CCEeccCceecccEECCCCC-EEEEEEEEECHHHcCCCCeEEEEEEcCCC
Confidence 999998 6766 999999 454432111000 00000 11112344444445568999999999875
No 199
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}
Probab=99.81 E-value=1.2e-18 Score=129.66 Aligned_cols=181 Identities=19% Similarity=0.266 Sum_probs=111.4
Q ss_pred ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e-ee--eeee----eeE-
Q psy7941 13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K-AV--LAIH----EHV- 83 (238)
Q Consensus 13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~-~~--~~~~----~~~- 83 (238)
..+..+.+.+|++++|.|.+..... ..+.+.|+|+.. . .. .... ...
T Consensus 11 ~~p~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~ 66 (261)
T 2xqy_G 11 QQPGAELVKPGASVKMSCKASGYSF------------------------TSYWMNWVKQRPGRGLEWIGRIDPSDNETHY 66 (261)
T ss_dssp ECCSEEEECTTCCEEEEEEEESSCG------------------------GGSCEEEEEECTTSCEEEEEEECTTTCCEEE
T ss_pred ECCCCEEEcCCCCEEEEEEeCCccc------------------------CCceEEEEEeCCCCCcEEEEEEecCCCceee
Confidence 3466788999999999999974210 034699999742 1 11 1100 000
Q ss_pred -eecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCC----cceeeEEEEEc----CCcccccccCCceeecCC
Q psy7941 84 -ITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPM----TKQMAFLEVVI----PPDISSEETSGDMMVPEG 153 (238)
Q Consensus 84 -~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~l~v~~----~~~~~~~~~~~~~~~~~g 153 (238)
....+|+.+.... ...++|.|.+++.+|+|.|+|.+.+... ....+.|.|.. +|.+.... + ...+..|
T Consensus 67 ~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-p-~~~v~~g 144 (261)
T 2xqy_G 67 NQDFKDKVTLTVDKSSSTVYIQLSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLA-P-VCGDTTG 144 (261)
T ss_dssp CGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEEC-C-CCC--CC
T ss_pred CCccCCcEEEEecCCCCEEEEEEcCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeC-C-CccccCC
Confidence 1124678776542 3567999999999999999999987431 12335677764 23332211 1 1235679
Q ss_pred CcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCCC-CcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 154 GSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPPS-SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 154 ~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
+.+.|.|.+.+ +|.+ .+.|++++. .+........ ... .....+.|.|.....+| |.|+|.|.|...
T Consensus 145 ~~v~L~C~~~g~~P~~i~v~W~k~g~-~~~~~~~~~~~~~g-~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~ 213 (261)
T 2xqy_G 145 SSVTLGCLVKGYFPEPVTLTWNSGSL-SSGVHTFPAVLQSD-LYTLSSSVTVTSSTWPS-QSITCNVAHPAS 213 (261)
T ss_dssp SEEEEEEEEEEEBSSCCEEEEGGGTC-CTTEEECCCEEETT-EEEEEEEEEEETTTTTT-SCCEEEEEEGGG
T ss_pred CcEEEEEEEEeEeCCCCEEEEecCCC-cCceEecCceecCC-cEEEEEEEEEeccccCC-CEEEEEEEECCC
Confidence 99999999988 5777 999999543 3211110000 001 11223468888777777 999999999764
No 200
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Probab=99.81 E-value=1.3e-18 Score=122.30 Aligned_cols=160 Identities=16% Similarity=0.217 Sum_probs=101.9
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEe--CCceeeeeee-eeEeecCccEE
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIK--ADTKAVLAIH-EHVITNNARLS 91 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~--~~~~~~~~~~-~~~~~~~~~~~ 91 (238)
.+.+.+..|+++.|.|.... .+.+.+.+.|++ ++..+..... ...+..++|+.
T Consensus 6 ~~~v~g~~G~sv~L~~~~~~------------------------~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~ 61 (182)
T 1hnf_A 6 ALETWGALGQDINLDIPSFQ------------------------MSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYK 61 (182)
T ss_dssp CEEEEEETTSCEEECCTTCC------------------------CCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEE
T ss_pred ccEEEEecCCCEEEeCCccc------------------------ccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEE
Confidence 56788999999999994311 112345799999 6654321110 00112356666
Q ss_pred EEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc---ceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCC
Q psy7941 92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT---KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP 168 (238)
Q Consensus 92 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~ 168 (238)
+..+. +|.|.+++.+|+|.|+|.+.+.... ...+.|.|..+...+ .+.. .+..+.|.|.+.+.|.+
T Consensus 62 ~~~ng----sL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~V~~~~~~P------~i~~-~~~~v~L~C~~~~~p~~ 130 (182)
T 1hnf_A 62 LFKNG----TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKP------KISW-TCINTTLTCEVMNGTDP 130 (182)
T ss_dssp ECTTS----CEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEECCCCCC------EEEE-ETTTTEEEEECSSCSSC
T ss_pred ECCCC----CEEECCCChhhCEEEEEEEEeCCCceeEEEEEEEEEcCcCCCC------EEEE-ccCcEEEEeEccCCCCC
Confidence 65332 8999999999999999999775332 234456776432111 1111 23478999999998889
Q ss_pred eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 169 KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 169 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
.+.|++ ++..+.. ....+.+. ...+|.|.|+|.|.|..|..
T Consensus 131 ~~~W~~-~g~~l~~-------------~~~~i~~~-~~~~d~G~Y~C~a~N~~~~~ 171 (182)
T 1hnf_A 131 ELNLYQ-DGKHLKL-------------SQRVITHK-WTTSLSAKFKCTAGNKVSKE 171 (182)
T ss_dssp EEEEEE-SSCEEEE-------------ESSCEEEE-CCSCEEEEEEEEEECSSCEE
T ss_pred EEEEEE-CCEECCC-------------CCcEEEEe-cccCCCcEEEEEEEeCCCCc
Confidence 999999 4444411 11123322 24689999999999999843
No 201
>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...
Probab=99.81 E-value=7.7e-19 Score=128.47 Aligned_cols=181 Identities=18% Similarity=0.328 Sum_probs=104.1
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eeeee--e------e
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLAIH--E------H 82 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~~--~------~ 82 (238)
+..+.+.+|+++.|.|.+..... ..+...+.||+..... ..... . .
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~----------------------~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~ 64 (232)
T 3qhz_H 7 SGPALVKPTQTLTLTCSFSGFSL----------------------STSGMSVSWIRQPPGKALEWLALIDWDDDTYYITY 64 (232)
T ss_dssp ECCSEECTTSCEEEEEEEESCGG----------------------GCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECC
T ss_pred CCCEEECCCCcEEEEEEEeCccc----------------------ccceeEeEEEEECCCCCcEEEEEEECCCCcccccc
Confidence 44567899999999999964210 0112234999854211 11110 0 0
Q ss_pred EeecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCC---------CcceeeEEEEEc----CCcccccccCCce
Q psy7941 83 VITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNP---------MTKQMAFLEVVI----PPDISSEETSGDM 148 (238)
Q Consensus 83 ~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~---------~~~~~~~l~v~~----~~~~~~~~~~~~~ 148 (238)
.....+|+.+.... .+.++|.|.+++.+|+|.|.|.+.+.. .....+.+.|.. +|.+.. .....
T Consensus 65 ~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~--~~~~~ 142 (232)
T 3qhz_H 65 SSSLKTRLTISKDTSKSQVVLTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFP--LAPSS 142 (232)
T ss_dssp CTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEE--ECC--
T ss_pred CccccCceEEEeccCCCEEEEEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEE--ecccc
Confidence 01123688877643 477899999999999999999997542 122334566652 222221 12223
Q ss_pred eecCCCcEEEEEEEccc-cCC-eEEEEeCCCeeeEeecCC--CCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 149 MVPEGGSAKLVCKAKGY-PTP-KITWRREDNKEIIVRSNP--PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 149 ~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
.+..|+.+.|.|.+.+. |.+ .+.|++++ ..+...... ...... ....+.|.|......| |.|+|.|.|..+
T Consensus 143 ~~~~g~~v~L~C~~~~~~P~~~~v~W~~~g-~~~~~~~~~~~~~~~g~-~~~~s~L~i~~~~~~~-g~ytC~v~~~~~ 217 (232)
T 3qhz_H 143 KSTSGGTAALGCLVKDYFPEPVTVSWNSGA-LTSGVHTFPAVLQSSGL-YSLSSVVTVPSSSLGT-QTYICNVNHKPS 217 (232)
T ss_dssp -----CEEEEEEEEEEEBSSCCEEEEGGGT-BCTTEEECCCEECTTSC-EEEEEEEEEEGGGGGT-CCCEEEEEEGGG
T ss_pred cccCCCcEEEEEEEeeEeCCCeEEEEEECC-EecceeeccceeCCCCC-EEEEEEEEEchhhcCC-CEEEEEEEeCCC
Confidence 45568999999999884 423 68899844 321111100 000111 1222368888888888 999999999886
No 202
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Probab=99.81 E-value=1.9e-18 Score=124.92 Aligned_cols=177 Identities=18% Similarity=0.308 Sum_probs=106.0
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eeeeee---eEe--e
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLAIHE---HVI--T 85 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~~~~---~~~--~ 85 (238)
+..+.+.+|+++.|.|.+..... +.+.+.|+|+.. .. ...... ... .
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~ 62 (215)
T 1c5d_H 7 SGPGLVQPSQTLSLTCTVSGFPL------------------------TTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSA 62 (215)
T ss_dssp ECCCEECTTCCEEEEEEECSSCT------------------------TSCCEEEEEECTTSCCEEEEEECTTCCEECCTT
T ss_pred CCCeeecCCCcEEEEEEECCCcC------------------------CCCeEEEEEECCCCCcEEEEEEcCCCCcEECCc
Confidence 56678999999999999964210 135699998642 11 111100 000 1
Q ss_pred cCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCC----CcceeeEEEEEc----CCcccccccCCceeecCCCcE
Q psy7941 86 NNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNP----MTKQMAFLEVVI----PPDISSEETSGDMMVPEGGSA 156 (238)
Q Consensus 86 ~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~----~~~~~~~l~v~~----~~~~~~~~~~~~~~~~~g~~~ 156 (238)
..+|+.+.... ...++|.|.+++.+|+|.|.|.+.+.. .....+.|.|.. +|.+.... ....+..|+.+
T Consensus 63 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~--~~~~~~~g~~v 140 (215)
T 1c5d_H 63 LKSRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLA--PGCGDTTSSTV 140 (215)
T ss_dssp TGGGEEEEEETTTTEEEEEESSCCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEEC--CCSSCCCCSSE
T ss_pred ccCcEEEEeeCCCceEEEEECCCCcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEecc--CChhhccCCcE
Confidence 24678776543 357799999999999999999997653 122345677763 23332211 11234678999
Q ss_pred EEEEEEccc-cCC-eEEEEeCCCeeeEeecCCCC-CcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 157 KLVCKAKGY-PTP-KITWRREDNKEIIVRSNPPS-SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 157 ~l~C~~~~~-p~~-~~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
.|.|.+.|. |.| .+.|++++. .......... ...... ..+.|. ....+| |.|+|.|.|..+
T Consensus 141 ~L~C~~~g~~P~p~~v~W~~~g~-~~~~~~~~~~~~~g~~~-~~s~L~--~~~~~~-g~ytC~v~n~~~ 204 (215)
T 1c5d_H 141 TLGCLVKGYFPEPVTVTWNSGAL-SSDVHTFPAVLQSGLYT-LTSSVT--SSTWPS-QTVTCNVAHPAS 204 (215)
T ss_dssp EEEEEEEEEBSSCCEEEEGGGTT-CCSCCBCCCEEETTEEE-EEEEEE--ESSTTT-SCCEEEEEEGGG
T ss_pred EEEEEEeeeEcCCcEEEEccCCc-cCceEecCcccCCCCEE-EEEEEe--cccCCC-CeEEEEEEeCCC
Confidence 999999885 888 999999543 2211100000 000111 111232 333355 999999999887
No 203
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=99.81 E-value=1.1e-19 Score=154.42 Aligned_cols=186 Identities=20% Similarity=0.337 Sum_probs=58.3
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe-e--cCccE
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI-T--NNARL 90 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~-~--~~~~~ 90 (238)
++..+.+.+|+++.|.|.+.... .+.+.+.|++++............ . .....
T Consensus 230 ~~~~~~v~~G~~v~L~C~~~~~~------------------------~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (772)
T 3v2a_R 230 PSHGIELSVGEKLVLNCTARTEL------------------------NVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEM 285 (772)
T ss_dssp CCSCEEEETTCCEEEEEEEEECT------------------------TCCCEEEEECC--------CEEEEC-----CCC
T ss_pred CCCceEEecCCcEEEEEEEecCC------------------------CCceeEEEecCCccCCCceeeeccccccccccc
Confidence 34457899999999999997421 234579999987653221110000 0 00011
Q ss_pred EEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccc-cCCceeecCCCcEEEEEEEccccCC
Q psy7941 91 SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEE-TSGDMMVPEGGSAKLVCKAKGYPTP 168 (238)
Q Consensus 91 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~ 168 (238)
.. ...+|.|.+++.+|+|.|+|.+.+... ....+.+.|..+|.+.... ......+.+|+.+.|.|.+.++|.+
T Consensus 286 ~~-----~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~ 360 (772)
T 3v2a_R 286 KK-----FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPP 360 (772)
T ss_dssp EE-----EEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEECCCC-------------------------------
T ss_pred eE-----EEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCC
Confidence 11 223899999999999999999987533 3455668888777654332 2234567889999999999999999
Q ss_pred eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC-ccceEEEEEEeec
Q psy7941 169 KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT-VSKRLMLHVHCTY 237 (238)
Q Consensus 169 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~-~~~~~~l~V~~~p 237 (238)
.+.|++ ++..+.... .......|.|.++..+|.|.|+|.|.|..|.. .+..+.|.|..+|
T Consensus 361 ~v~W~~-~g~~l~~~~--------~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P 421 (772)
T 3v2a_R 361 EIKWYK-NGIPLESNH--------TIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPP 421 (772)
T ss_dssp ----------------------------------------------------------------------
T ss_pred eEEEEE-CCEeCCCCc--------eEccceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCC
Confidence 999999 554443211 11134679999999999999999999998743 2556777777766
No 204
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=99.80 E-value=4.2e-20 Score=141.10 Aligned_cols=171 Identities=20% Similarity=0.326 Sum_probs=115.0
Q ss_pred eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEE
Q psy7941 12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLS 91 (238)
Q Consensus 12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 91 (238)
......+.+.+|+++.|.|.+.... +.+.+.|+|++...... .....++.
T Consensus 9 ~~~~~~~~v~~G~~v~L~C~~~~~~-------------------------~~~~v~W~k~~~~~~~~-----~~~~~~~~ 58 (315)
T 1itb_B 9 REEKIILVSSANEIDVRPCPLNPNE-------------------------HKGTITWYKDDSKTPVS-----TEQASRIH 58 (315)
T ss_dssp BCCCCCCEEETTSCCCCBCCCCSCC-------------------------CSSCCCEECTTSCSCSC-----CCTTSSSE
T ss_pred hcCceEEEEcCCCcEEEEeeccCcC-------------------------CCceEEEEeCCCcCccc-----cccCCcEe
Confidence 3345577899999999999985321 14579999987543211 11233443
Q ss_pred EEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEE-cCCcccccc-cCCceeecCCCcEEEEEEE------
Q psy7941 92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVV-IPPDISSEE-TSGDMMVPEGGSAKLVCKA------ 162 (238)
Q Consensus 92 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~-~~~~~~~~~-~~~~~~~~~g~~~~l~C~~------ 162 (238)
.... +|.|.+++.+|+|.|+|.+.+... ......+.+. .+|.+.... ......+..|+.+.|.|.+
T Consensus 59 ~~~~-----~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~ 133 (315)
T 1itb_B 59 QHKE-----KLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKN 133 (315)
T ss_dssp ECSS-----BEECTTCCGGGCSCCEECCCSSSCCCCEECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCT
T ss_pred ccCC-----eEEECCCChhhCEEEEEEEeCCceEEEEEEEEEEeCCCCCcccccccccceEEecCCCeEEEEeccccccc
Confidence 3322 899999999999999999976532 2222333333 233332221 1123457889999999998
Q ss_pred ccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEee-eCCCCC
Q psy7941 163 KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAA-NGVPPT 224 (238)
Q Consensus 163 ~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~-n~~g~~ 224 (238)
.|.|.+.+.|++ ++..+... .......+..|.|.++..+|.|.|+|.|. |..|..
T Consensus 134 ~g~p~~~i~W~k-~~~~l~~~------~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~ 189 (315)
T 1itb_B 134 ENNELPKLQWYK-DCKPLLLD------NIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQ 189 (315)
T ss_dssp TTTCCCCCEEEE-TTEECCCC------SSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred CCCCCCEEEEEE-CCEECCCc------cceEeecCceEEEEeceehhCcEEEEEEEcCCCCcE
Confidence 789999999999 55544321 11123455689999999999999999999 788844
No 205
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Probab=99.80 E-value=2.2e-18 Score=126.54 Aligned_cols=181 Identities=15% Similarity=0.257 Sum_probs=109.7
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e-e--eeeeee--eEe
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K-A--VLAIHE--HVI 84 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~-~--~~~~~~--~~~ 84 (238)
+...+..+.+.+|+++.|.|.+.. +.+.+.|+|+.. . . ...... ...
T Consensus 2 v~q~p~~v~v~~G~~v~L~C~~~~---------------------------~~~~v~W~r~~~~~~~~~l~~~~~~~~~~ 54 (238)
T 1bec_A 2 VTQSPRNKVAVTGGKVTLSCQQTN---------------------------NHNNMYWYRQDTGHGLRLIHYSYGAGSTE 54 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEEESS---------------------------CCSEEEEEEECTTSCEEEEEEEEETTEEE
T ss_pred cccCCCeeEEeCCCcEEEEEEeCC---------------------------CCceEEEEEECCCCCEEEEEEEeCCCccc
Confidence 456788899999999999999841 135699999642 1 1 111100 001
Q ss_pred --ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC------cceeeEEEEEc------CCcccccccCCceee
Q psy7941 85 --TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM------TKQMAFLEVVI------PPDISSEETSGDMMV 150 (238)
Q Consensus 85 --~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~------~~~~~~l~v~~------~~~~~~~~~~~~~~~ 150 (238)
...+|+.+.......++|.|.+++.+|+|.|+|.+.+... ....+.|.|.. +|.+... .+....+
T Consensus 55 ~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~-~~~~~~~ 133 (238)
T 1bec_A 55 KGDIPDGYKASRPSQEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLF-EPSKAEI 133 (238)
T ss_dssp ECSCCTTCEEECCSSSEEEEEESSCCGGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEE-CCCSTTC
T ss_pred CCCccceEEEEecCCCEEEEEEecCCcccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEE-CCChHHc
Confidence 1246777765445677999999999999999999976521 12334577765 2333221 1222335
Q ss_pred cCCCcEEEEEEEccc-cCC-eEEEEeCCCeeeEeecCCCCCcceEEEeec------eEEEEEeecCC-CeEEEEEeeeCC
Q psy7941 151 PEGGSAKLVCKAKGY-PTP-KITWRREDNKEIIVRSNPPSSQKVFSVESE------VLSLTKVTRSE-MGAYQCIAANGV 221 (238)
Q Consensus 151 ~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d-~G~y~C~~~n~~ 221 (238)
..|+.+.|.|.+.|. |.+ .+.|++ ++..+...... ........++ .|.|......| .|.|+|.|.|..
T Consensus 134 ~~g~~~~L~C~~~g~~P~~~~v~W~~-~g~~~~~~~~~--~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~ 210 (238)
T 1bec_A 134 ANKQKATLVCLARGFFPDHVELSWWV-NGKEVHSGVST--DPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHG 210 (238)
T ss_dssp SSSCSCSEEEEEEEEBSCCEEEEEEE-TTEEECTTEEE--CSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECC
T ss_pred ccCCceEEEEEEeeEeCCCcEEEEEE-CCEECCCceec--ccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCC
Confidence 578999999999984 655 999999 55544221100 0000111122 23333333334 568999999975
Q ss_pred C
Q psy7941 222 P 222 (238)
Q Consensus 222 g 222 (238)
.
T Consensus 211 l 211 (238)
T 1bec_A 211 L 211 (238)
T ss_dssp C
T ss_pred C
Confidence 3
No 206
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=99.80 E-value=1.5e-18 Score=138.26 Aligned_cols=181 Identities=17% Similarity=0.275 Sum_probs=109.9
Q ss_pred EecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCc-eEEEEeCCceeeee-e--eeeEeecCccEEEEEcC
Q psy7941 21 AQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM-KVAWIKADTKAVLA-I--HEHVITNNARLSVTHND 96 (238)
Q Consensus 21 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~ 96 (238)
..|+++.|.|.+.+. .|.+ .+.|++++..+... . .......++.+....
T Consensus 129 ~~g~~~~l~C~~~g~-------------------------~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~-- 181 (438)
T 1qgc_4 129 LTSGGASVVCFLNNF-------------------------YPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSS-- 181 (438)
T ss_dssp HHTTEEEEEEEEEEE-------------------------BSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEE--
T ss_pred ccCCceEEEEEEccc-------------------------cCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEE--
Confidence 458899999998631 2344 79999977654322 1 111111233343332
Q ss_pred CCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcC-CcccccccCCceeecCCCcEEEEEEEcccc--CCeEEEE
Q psy7941 97 ANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIP-PDISSEETSGDMMVPEGGSAKLVCKAKGYP--TPKITWR 173 (238)
Q Consensus 97 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~-~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~ 173 (238)
.|.|.+++.+|+|.|+|.+.+..... ...+.+... +.+.. ..+....+.+|+.+.|.|.+.|.| .+.+.|+
T Consensus 182 ----~L~i~~~~~~d~G~Y~C~a~n~~~~~-~~~~~~~~~~~~~~~-~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~ 255 (438)
T 1qgc_4 182 ----TLTLTKDEYERHNSYTCEATHKTSTS-PIVKSFNRNECEVML-VESGGGLVKPGGSLKLSCTASGFIFNRCAMSWV 255 (438)
T ss_dssp ----EEEEEHHHHHTCCEEEEEEEETTCSS-CEEEEEETTC-CCEE-EEECCEEECTTCCEEEEEEEESSCGGGSCEEEE
T ss_pred ----EEEEeCcccCCCCeEEEEEEecccCC-ceecccccccceeEE-ecCCceEEecCCcEEEEEEEcccccCCcEEEEE
Confidence 89999999999999999998764432 233344322 11111 123456788999999999999977 6799999
Q ss_pred eCC-CeeeEee--cC---------CCCCcceEEEe-----eceEEEEEeecCCCeEEEEEeeeCCCC----CccceEEEE
Q psy7941 174 RED-NKEIIVR--SN---------PPSSQKVFSVE-----SEVLSLTKVTRSEMGAYQCIAANGVPP----TVSKRLMLH 232 (238)
Q Consensus 174 ~~~-~~~~~~~--~~---------~~~~~~~~~~~-----~~~l~i~~~~~~d~G~y~C~~~n~~g~----~~~~~~~l~ 232 (238)
++. +..+... .. ........... ...|.|.++..+|+|.|+|.|.|..+. .......|.
T Consensus 256 k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~ 335 (438)
T 1qgc_4 256 RQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVT 335 (438)
T ss_dssp EEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEE
T ss_pred ECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEE
Confidence 852 3222110 00 00011221111 237999999999999999999985431 122344566
Q ss_pred EE
Q psy7941 233 VH 234 (238)
Q Consensus 233 V~ 234 (238)
|.
T Consensus 336 V~ 337 (438)
T 1qgc_4 336 VS 337 (438)
T ss_dssp EC
T ss_pred Ee
Confidence 65
No 207
>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...
Probab=99.80 E-value=9.2e-19 Score=128.66 Aligned_cols=182 Identities=18% Similarity=0.277 Sum_probs=107.3
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eeeee-------e-
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLAIH-------E- 81 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~~-------~- 81 (238)
.+..+.+.+|+++.|.|.+...... .....+.||+..... ..... .
T Consensus 6 ~~~~~~v~~G~~v~L~C~~~~~~~~----------------------~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~ 63 (239)
T 3tv3_H 6 ESGPTLVEASETLSLTCAVSGDSTA----------------------ACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRG 63 (239)
T ss_dssp EESCSEECTTSCEEEEEEEESSCTT----------------------SSSCEEEEEEECTTSCCEEEEEEECCCCTTSSC
T ss_pred cCCCEEEcCCCCEEEEEEEcCCccc----------------------ccceEEEEEEECCCCCcEEEEEEecccccccCC
Confidence 4556789999999999999742210 002369999853211 11111 0
Q ss_pred -eEe--ecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCC--------------cceeeEEEEEc----CCcc
Q psy7941 82 -HVI--TNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPM--------------TKQMAFLEVVI----PPDI 139 (238)
Q Consensus 82 -~~~--~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--------------~~~~~~l~v~~----~~~~ 139 (238)
... ...+|+.+.... ...++|.|.+++.+|+|.|+|.+.+... ....+.+.|.. +|.+
T Consensus 64 ~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v 143 (239)
T 3tv3_H 64 WTYHNPSLKSRLTLALDTPKNLVFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSV 143 (239)
T ss_dssp EEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEE
T ss_pred ceecCccccCCEEEEEECCCCEEEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEE
Confidence 000 124688876543 4677999999999999999999965310 11233456642 2222
Q ss_pred cccccCCceeecCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCC--CCCcceEEEeeceEEEEEeecCCCeEEEE
Q psy7941 140 SSEETSGDMMVPEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNP--PSSQKVFSVESEVLSLTKVTRSEMGAYQC 215 (238)
Q Consensus 140 ~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~y~C 215 (238)
.. ......+..|+.+.|.|.+.+ +|.+ .+.|++++ ..+...... ...... ....+.|.|.....+| |.|+|
T Consensus 144 ~~--~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g-~~~~~~~~~~~~~~~g~-~~~~s~L~i~~~~~~~-~~ytC 218 (239)
T 3tv3_H 144 FP--LAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGA-LTSGVHTFPAVLQSSGL-YSLSSVVTVPSSSLGT-QTYIC 218 (239)
T ss_dssp EE--ECCCCCC--TTEEEEEEEEEEEBSSCCEEEEGGGT-BCTTEEECCCEECTTSC-EEEEEEEEEEGGGTTT-CCCEE
T ss_pred EE--ECCChhhccCCcEEEEEEEeeEeCCCeEEEEEECC-ccCceEecCceECCCCC-EEEEEEEEEchhhcCC-CEEEE
Confidence 21 122233456899999999988 5645 58999844 321111100 000111 1222367788777788 99999
Q ss_pred EeeeCCC
Q psy7941 216 IAANGVP 222 (238)
Q Consensus 216 ~~~n~~g 222 (238)
.|.|..+
T Consensus 219 ~v~h~~~ 225 (239)
T 3tv3_H 219 NVNHKPS 225 (239)
T ss_dssp EEEEGGG
T ss_pred EEEECCC
Confidence 9999876
No 208
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Probab=99.80 E-value=1.1e-18 Score=129.44 Aligned_cols=179 Identities=21% Similarity=0.348 Sum_probs=97.2
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e-e--eeeee----eeEe--
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K-A--VLAIH----EHVI-- 84 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~-~--~~~~~----~~~~-- 84 (238)
+..+.+.+|++++|.|.+..... ..+.+.|+|... . . +.... ....
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~ 62 (257)
T 3bn9_D 7 SGGGLVKPGGSLRLSCAASGFTF------------------------SSYAMSWVRQAPGKGLEWVSAISGSGGSTYYAD 62 (257)
T ss_dssp ECCEEECTTCEEEEEEEEESSCG------------------------GGCCEEEEEECTTSCEEEEEEECSSSCCEEECG
T ss_pred cCCEEEcCCCcEEEEEEeccccC------------------------CCceEEEEEECCCCCeEEEEEEecCCCceecCc
Confidence 45678999999999999974210 034699999642 1 1 11110 0011
Q ss_pred ecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCC--------------cceeeEEEEEc----CCcccccccC
Q psy7941 85 TNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPM--------------TKQMAFLEVVI----PPDISSEETS 145 (238)
Q Consensus 85 ~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--------------~~~~~~l~v~~----~~~~~~~~~~ 145 (238)
...+|+.+.... ...++|.|.+++.+|+|.|+|.+.+... ....+.|.|.. +|.+....
T Consensus 63 ~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~-- 140 (257)
T 3bn9_D 63 SVKGRFTISRDNSKNTLYLQMSSLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLA-- 140 (257)
T ss_dssp GGTTTEEEEEETTTTEEEEEEESCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCC--
T ss_pred ccCCceEEEecCCCCEEEEEECCCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEec--
Confidence 124688776543 4677999999999999999999976532 11234677764 23332211
Q ss_pred CceeecCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCC--CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941 146 GDMMVPEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPP--SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~ 221 (238)
....+..|+.+.|.|.+.+ +|.| .+.|++++. .+....... ..... ....+.|.|.....+| |.|+|.|.|..
T Consensus 141 p~~~~~~g~~v~L~C~~~g~~P~pi~v~W~k~g~-~~~~~~~~~~~~~~g~-y~~~s~L~I~~~~~~~-g~YtC~v~n~~ 217 (257)
T 3bn9_D 141 PSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGAL-TSGVHTFPAVLQSSGL-YSLSSVVTVPSSSLGT-QTYICNVNHKP 217 (257)
T ss_dssp C-----------CCCEEEEEBSSCCEEEETTTTC-CSSCEECCCEECTTSC-EEEEEECCCC--------CEEEEEEEGG
T ss_pred CcccccCCCcEEEEEEEeeEECCCcEEEEeeCCC-cCCcEecCCeEcCCCC-EEEEEEEEEcccccCC-CeEEEEEEecC
Confidence 1123467899999999988 4877 999999543 321110000 00011 1123357777777777 99999999965
Q ss_pred C
Q psy7941 222 P 222 (238)
Q Consensus 222 g 222 (238)
.
T Consensus 218 ~ 218 (257)
T 3bn9_D 218 S 218 (257)
T ss_dssp G
T ss_pred C
Confidence 4
No 209
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=99.80 E-value=6e-19 Score=143.65 Aligned_cols=177 Identities=11% Similarity=0.150 Sum_probs=104.7
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEE
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT 93 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (238)
.+..+.|.+|++++|.|.+... +...+.|++++..+.. ...+.
T Consensus 54 ~~~~~~v~~g~~~~L~c~~~~~--------------------------~~~~~~W~~~~~~l~~---------~~~~~-- 96 (527)
T 3qs9_E 54 EAAAVEVDVSASITLQVLVDAP--------------------------GNISCLWVFKHSSLNC---------QPHFD-- 96 (527)
T ss_dssp --CEEEECSSCCEEEEEECSCC--------------------------SSCEEEEEETTEEECC---------CCBC---
T ss_pred eeeeEEEeccccEEEEEEEecC--------------------------CceeEEEEecCCccCc---------ccccC--
Confidence 3447899999999999998532 2346899998664321 11111
Q ss_pred EcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCeEEEE
Q psy7941 94 HNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWR 173 (238)
Q Consensus 94 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~ 173 (238)
..+....+|.|.+++.+|+|.|+|.+.+... .....+.|.+.+.+.... ........++.+.|.|.+.|.|.|.++|+
T Consensus 97 ~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~-~~~~~~~v~v~~~~~~~~-~~p~~~~~~~~~~L~C~a~G~P~P~i~W~ 174 (527)
T 3qs9_E 97 LQNRGVVSMVILKMTETQAGEYLLFIQSEAT-NYTILFTVSIRNTLLYTL-RRPYFRKMENQDALVCISESVPEPIVEWV 174 (527)
T ss_dssp ----CEEEEEESSCCSSSCSEEEEEEEC--C-EEEEEEEEEEC-----CE-EEEEEEECSSSSCEEEEEEESSCCEEEEE
T ss_pred CCcceEEEEEECcCChhhCeeEEEEEEeccc-cEEEEEEEEECCceeecc-CCCcEEecCCceEEEEEEceecCCeEEEE
Confidence 1111233799999999999999999987533 334445555444332211 11123345677889999999999999999
Q ss_pred eCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 174 REDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
+++.. ...... .....-......+..+|.|.|+|.|.|..|...++.+.|.|..+|
T Consensus 175 ~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p 230 (527)
T 3qs9_E 175 LCDSQ-GESCKE-------ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTP 230 (527)
T ss_dssp EC---------------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCC
T ss_pred ECCCC-Cccccc-------cCCcEEEEeeeeccccCCEEEEEEEEeCCCcccceEEEEEEeccC
Confidence 95432 211000 000000111223457899999999999999665555777776544
No 210
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=99.80 E-value=1.3e-18 Score=131.30 Aligned_cols=171 Identities=15% Similarity=0.240 Sum_probs=108.2
Q ss_pred cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCc
Q psy7941 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNA 88 (238)
Q Consensus 9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ 88 (238)
|.|......+.+.+|+++.|.|.+.. .+.|++++..+..
T Consensus 1 P~i~~~~~~~~v~~G~~v~L~C~~~~------------------------------~v~W~~~~~~~~~----------- 39 (289)
T 3mjg_X 1 LVVTPPGPELVLNVSSTFVLTCSGSA------------------------------PVVWERMSQEPPQ----------- 39 (289)
T ss_dssp CCBCSSCSEEECCTTCCEEEEEEESS------------------------------CCEEEBTTBCCSE-----------
T ss_pred CeecCCCCeEEEeCCCcEEEEEeccc------------------------------eEEEECCCCCccc-----------
Confidence 45555667788999999999999852 1899998776421
Q ss_pred cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEcC-CcccccccCCc---eeecCCCcEEEEEEE
Q psy7941 89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIP-PDISSEETSGD---MMVPEGGSAKLVCKA 162 (238)
Q Consensus 89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~-~~~~~~~~~~~---~~~~~g~~~~l~C~~ 162 (238)
+...........+|.|.+++.+|+|.|+|.+.+... ......+.|.+. |.......... ..+.+|+.+.|.|.+
T Consensus 40 ~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~ 119 (289)
T 3mjg_X 40 EMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRV 119 (289)
T ss_dssp EEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCB
T ss_pred ceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEc
Confidence 111111111234899999999999999999977542 223345555543 22222111212 568899999999999
Q ss_pred ccccCCeEEEEeCC-CeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEe
Q psy7941 163 KGYPTPKITWRRED-NKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHC 235 (238)
Q Consensus 163 ~~~p~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~ 235 (238)
. .|.+.+.|++.+ +..+... .. ....+ ....|.|.|+|.|.|..+...+..+.|.|..
T Consensus 120 ~-~p~~~v~w~~~~~~~~~~~~---------~~-~~~~~----~~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~ 178 (289)
T 3mjg_X 120 T-DPQLVVTLHEKKGDVALPVP---------YD-HQRGF----SGIFEDRSYICKTTIGDREVDSDAYYVYRLQ 178 (289)
T ss_dssp S-CTTSCEEEEESSCCSCCCCC---------EE-TTTEE----EECCCSSEEEEEEEETTEEEECCCEEEEECC
T ss_pred C-CCCceEEEEeCCCCCcccee---------ec-CCcCe----eeeccCcEEEEEEEeCCceeeeeeEEEEecC
Confidence 8 678899999854 2222100 00 00011 1357999999999988765556666666654
No 211
>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*
Probab=99.79 E-value=1.7e-18 Score=127.89 Aligned_cols=182 Identities=19% Similarity=0.299 Sum_probs=106.3
Q ss_pred eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee--------E
Q psy7941 12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH--------V 83 (238)
Q Consensus 12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~--------~ 83 (238)
+..+..+.+.+|+++.|.|.+.... .+.+.+.||+............ .
T Consensus 3 l~~~~~v~v~~G~~v~L~C~~s~~~------------------------~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~ 58 (248)
T 3u2s_H 3 LVESGGGVVQPGSSLRLSCAASGFD------------------------FSRQGMHWVRQAPGQGLEWVAFIKYDGSEKY 58 (248)
T ss_dssp EEEECCEEECTTCCEEEEEEEESSC------------------------GGGSCEEEEEECTTSCEEEEEEECTTSSCEE
T ss_pred eecCCCEEEeCCCCEEEEEEecccc------------------------CCccEEEEEEECCCCCcEEEEEEecCCCcee
Confidence 3456678899999999999996421 1134699998542211110000 0
Q ss_pred --eecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCC-----------------------CcceeeEEEEEc--
Q psy7941 84 --ITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNP-----------------------MTKQMAFLEVVI-- 135 (238)
Q Consensus 84 --~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~-----------------------~~~~~~~l~v~~-- 135 (238)
....+|+.+.... ...++|.|.+++.+|+|.|.|.+.+.. .....+.+.|..
T Consensus 59 ~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~ 138 (248)
T 3u2s_H 59 HADSVWGRLSISRDNSKDTLYLQMNSLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSAS 138 (248)
T ss_dssp ECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCC
T ss_pred cCcccCCcEEEEecCCCCEEEEEECCCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccC
Confidence 1124688876543 467899999999999999999996521 112234566652
Q ss_pred --CCcccccccCCceeecCCCcEEEEEEEcc-cc-CCeEEEEeCCCeeeEeecCC--CCCcceEEEeeceEEEEEeecCC
Q psy7941 136 --PPDISSEETSGDMMVPEGGSAKLVCKAKG-YP-TPKITWRREDNKEIIVRSNP--PSSQKVFSVESEVLSLTKVTRSE 209 (238)
Q Consensus 136 --~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p-~~~~~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d 209 (238)
+|.+.. ......+..|+.+.|.|.+.+ +| ...+.|++++ ......... ...... ....+.|.+......|
T Consensus 139 ~~~P~v~~--~~~~~~~~~g~~~~L~C~~~~~~P~~~~v~W~~~g-~~~~~~~~~~~~~~~g~-~~~~s~L~i~~~~~~~ 214 (248)
T 3u2s_H 139 TKGPSVFP--LAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGA-LTSGVHTFPAVLQSSGL-YSLSSVVTVPSSSLGT 214 (248)
T ss_dssp CBCCEEEE--ECCC------CEEEEEEEEEEEBSSCCEEEEGGGT-BCTTEEECCCEECTTSC-EEEEEEEEEEGGGBTT
T ss_pred CCCCEEEE--eCCCccccCCCcEEEEEEEeeEECCCeEEEEeECC-ccCceeecCceECCCCC-EEEEEEEEEChhhcCC
Confidence 222221 112223456899999999987 55 3479999844 321111100 000111 1222357777777778
Q ss_pred CeEEEEEeeeCCC
Q psy7941 210 MGAYQCIAANGVP 222 (238)
Q Consensus 210 ~G~y~C~~~n~~g 222 (238)
|.|+|.+.|..+
T Consensus 215 -~~ytC~v~h~~~ 226 (248)
T 3u2s_H 215 -QTYICNVNHKPS 226 (248)
T ss_dssp -BCCEEEEEEGGG
T ss_pred -CeEEEEEEECCC
Confidence 999999999876
No 212
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=99.79 E-value=8.3e-18 Score=119.82 Aligned_cols=161 Identities=17% Similarity=0.218 Sum_probs=102.2
Q ss_pred eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcC
Q psy7941 17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHND 96 (238)
Q Consensus 17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (238)
.+.|..|+++.|.|.+ +. ..|.+.|+|++.+..+ ++....
T Consensus 16 ~v~v~~G~sv~L~C~a-~~------------------------p~P~~~i~W~~~~~~l------------~~~~~~--- 55 (210)
T 1gsm_A 16 VVAVALGASRQLTCRL-AC------------------------ADRGASVQWRGLDTSL------------GAVQSD--- 55 (210)
T ss_dssp EEEEETTCCEEEEEEE-CC------------------------SSTTCEEEEESSTTTT------------CCEEEE---
T ss_pred ceEEeCCCCEEEEEEC-CC------------------------CCCCcceEEeeccccc------------CcEEec---
Confidence 3789999999999998 32 1223379999966542 011111
Q ss_pred CCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc-ccC----CeE
Q psy7941 97 ANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPT----PKI 170 (238)
Q Consensus 97 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~----~~~ 170 (238)
.....|.|.+++.+|+|.|.|.+.+... ....+.|.|..+|....... . ....|+.. |.|.+.+ +|. +++
T Consensus 56 ~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ltV~~~P~~~~i~~-~--~~~~g~~~-l~C~a~g~~P~~~~~lti 131 (210)
T 1gsm_A 56 TGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSP-A--ALVPGDPE-VACTAHKVTPVDPNALSF 131 (210)
T ss_dssp SSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCSEEEEES-S--SBCTTCCE-EEEEEEEEBCCCTTTEEE
T ss_pred CCccEEEECccCcccCceEEEEEEeCCCceEEEEEEEEEecCCCcEEcc-c--eEEeCCce-EEEEeCCCCCCCCCCcEE
Confidence 2223899999999999999999987643 34467889998887654322 1 45667778 9999988 574 489
Q ss_pred EEEeCCCeeeEeecCCC-----------CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 171 TWRREDNKEIIVRSNPP-----------SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 171 ~W~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
.|++ ++..+....... ........-.+.|.+.....++.+.|+|.|.+...
T Consensus 132 ~Wlk-~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~ 193 (210)
T 1gsm_A 132 SLLV-GGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLP 193 (210)
T ss_dssp EEEE-TTEECTTCEECCCEEEECTTCCSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEET
T ss_pred EEEE-CCEEcccccccccceecccccccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeCC
Confidence 9999 555542211000 00111111122344444444444699999999873
No 213
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.79 E-value=1.1e-18 Score=139.73 Aligned_cols=157 Identities=15% Similarity=0.193 Sum_probs=113.3
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceE-----EEEeCCceeeeeeeeeEee
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKV-----AWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~W~~~~~~~~~~~~~~~~~ 85 (238)
+...|..+.+.+|+++.|.|.+.. |.+.+ .|+|++....
T Consensus 2 i~~~P~~~~v~~G~~v~L~C~~~g---------------------------p~p~~~~~~~~w~k~~~~~~--------- 45 (450)
T 1z7z_I 2 TSVSPSKVILPRGGSVLVTCSTSC---------------------------DQPMLLGIETPLPKKELLLP--------- 45 (450)
T ss_dssp CEEESSEEEEETTEEEEEEEECCS---------------------------SCCCEEEECSSSCEEECCSS---------
T ss_pred cccCCCceEEecCCcEEEEEEccC---------------------------CCcccccccceeeecceEec---------
Confidence 456778889999999999999863 24456 8888643211
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG 164 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~ 164 (238)
+.++ ..|.|.+++. |+| |+|.+.+.+. ....+.|.|..+|.+... .+....+.+|+.+.|.|.+.+
T Consensus 46 -~~~~---------~~l~i~~v~~-d~g-Y~C~a~~~~~~~~~~~~l~V~~~P~~~~~-~~~~~~v~~G~~v~L~C~~~g 112 (450)
T 1z7z_I 46 -GNNR---------KVYELSNVQE-DSQ-PMCYSNCPDGQSTAKTFLTVYWTPERVEL-APLPSWQPVGKNLTLRCQVEG 112 (450)
T ss_dssp -TTTE---------EEEEEEEECS-CBC-CEEEEEETTEEEEEECEEEEEBCCSEEEE-CCCCSEECTTSEEEEEEEEEC
T ss_pred -CCCc---------eEEEEEeccc-CCe-eEEEEeCCCCcceeEEEEEEEeCCCccee-cCCCceEeeCCeEEEEEEecC
Confidence 1121 1788999987 999 9999965432 344567888887766532 233456889999999999999
Q ss_pred ccCC---eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941 165 YPTP---KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP 223 (238)
Q Consensus 165 ~p~~---~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~ 223 (238)
.|++ .+.|++ ++..+....... ...+..|.|..+..+|.|.|+|.|.|..|.
T Consensus 113 ~~~~~~~~v~W~k-~g~~l~~~~~~~------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 167 (450)
T 1z7z_I 113 GAPRANLTVVLLR-GEKELKREPAVG------EPAEVTTTVLVRRDHHGANFSCRTELDLRP 167 (450)
T ss_dssp CBCGGGEEEEEEE-TTEEEEEEECCT------TTEEEEEEEECCSSCSSCEEEEEEEEECGG
T ss_pred CCCCcCcEEEEee-CCEEeecccccc------cccceEEEEEeeccccCceEEEEEEcccCC
Confidence 8887 999999 555554332111 112347999999999999999999999773
No 214
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...
Probab=99.78 E-value=4.5e-18 Score=125.97 Aligned_cols=185 Identities=16% Similarity=0.290 Sum_probs=111.8
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeeeee--
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAIHE-- 81 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~~~-- 81 (238)
.+.+...+..+.+.+|+++.|.|.+.. +.+.+.|+++... . +.....
T Consensus 3 ~~~v~q~p~~v~v~~G~~v~L~C~~~~---------------------------~~~~v~W~r~~~~~~~~~l~~~~~~~ 55 (252)
T 1oga_E 3 DGGITQSPKYLFRKEGQNVTLSCEQNL---------------------------NHDAMYWYRQDPGQGLRLIYYSQIVN 55 (252)
T ss_dssp --CEECSCSEEEEETTCCEEECCEECS---------------------------CCSEEEEEEECTTCCEEEEEEESSTT
T ss_pred cccceEcCCeEEEcCCCcEEEEEEeCC---------------------------CCCEEEEEEECCCCCeEEEEEEccCc
Confidence 355677888999999999999999842 1346999996421 1 111100
Q ss_pred eEe--ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC----CcceeeEEEEEc------CCcccccccCCcee
Q psy7941 82 HVI--TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP----MTKQMAFLEVVI------PPDISSEETSGDMM 149 (238)
Q Consensus 82 ~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~----~~~~~~~l~v~~------~~~~~~~~~~~~~~ 149 (238)
... ...+|+.+.......++|.|.+++.+|+|.|+|.+.+.. .....+.+.|.. +|.+... .+....
T Consensus 56 ~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~-~~~~~~ 134 (252)
T 1oga_E 56 DFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVF-EPSEAE 134 (252)
T ss_dssp CCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEE-CCCHHH
T ss_pred cccCCccCCcEEEEecCCCEEEEEECcCChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEE-CCChhh
Confidence 000 124677765433456799999999999999999997641 112234566653 2332221 111122
Q ss_pred ecCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCC---------CCcceEEEeeceEEEEEeecC-CCeEEEEEe
Q psy7941 150 VPEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPP---------SSQKVFSVESEVLSLTKVTRS-EMGAYQCIA 217 (238)
Q Consensus 150 ~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~i~~~~~~-d~G~y~C~~ 217 (238)
+..|+.+.|.|.+.| +|.+ .+.|++ ++..+....... ..... ....+.|.|...... +.|.|+|.+
T Consensus 135 ~~~g~~~~L~C~~~g~~P~~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~gt-~~~~s~L~i~~~~~~d~~~~ytC~v 212 (252)
T 1oga_E 135 ISHTQKATLVCLATGFYPDHVELSWWV-NGKEVHSGVSTDPQPLKEQPALNDSR-YSLSSRLRVSATFWQNPRNHFRCQV 212 (252)
T ss_dssp HHHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEECSSEEECSSCEESCTTSTTCC-EEEEEEEEEEHHHHTCTTCEEEEEE
T ss_pred hccCCceEEEEEEeeEcCCCcEEEEEE-CCEECCCCcccccccccccccCCCCC-EEEEEEEEECHHHhccCCCEEEEEE
Confidence 346889999999988 4754 999999 555443211000 01111 112234666655554 567999999
Q ss_pred eeCCC
Q psy7941 218 ANGVP 222 (238)
Q Consensus 218 ~n~~g 222 (238)
.|...
T Consensus 213 ~~~~l 217 (252)
T 1oga_E 213 QFYGL 217 (252)
T ss_dssp EECCB
T ss_pred EcCCC
Confidence 99864
No 215
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.78 E-value=5.1e-18 Score=135.76 Aligned_cols=177 Identities=11% Similarity=0.203 Sum_probs=113.9
Q ss_pred cccee-ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCc---eEEEEeCCceeeeeeeeeE
Q psy7941 8 EPDFL-YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM---KVAWIKADTKAVLAIHEHV 83 (238)
Q Consensus 8 ~p~~~-~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~W~~~~~~~~~~~~~~~ 83 (238)
+|.+. ..+....+.+|+++.|.|.+.+ .|++ .+.|+|++..+.....
T Consensus 85 ~P~~~~~~~~~~~v~~G~~v~L~C~~~g--------------------------~~~~~~~~v~W~k~g~~l~~~~~--- 135 (450)
T 1z7z_I 85 TPERVELAPLPSWQPVGKNLTLRCQVEG--------------------------GAPRANLTVVLLRGEKELKREPA--- 135 (450)
T ss_dssp CCSEEEECCCCSEECTTSEEEEEEEEEC--------------------------CBCGGGEEEEEEETTEEEEEEEC---
T ss_pred CCCcceecCCCceEeeCCeEEEEEEecC--------------------------CCCCcCcEEEEeeCCEEeecccc---
Confidence 44444 5666678899999999999864 2244 7999998765432110
Q ss_pred eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc-c--------eeeEEEEEcCCcccccccCCceeecCCC
Q psy7941 84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT-K--------QMAFLEVVIPPDISSEETSGDMMVPEGG 154 (238)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~--------~~~~l~v~~~~~~~~~~~~~~~~~~~g~ 154 (238)
. ......+|.|.++..+|+|.|+|.+.+.... . ....+.|...+... +.......+.+|+
T Consensus 136 -~---------~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~-p~~~~~~~v~~G~ 204 (450)
T 1z7z_I 136 -V---------GEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATP-PQLVSPRVLEVDT 204 (450)
T ss_dssp -C---------TTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSC-CEEECCSEEETTS
T ss_pred -c---------ccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCC-CEecCceeEEeCC
Confidence 0 0112238999999999999999999765221 1 22334444321110 0001115678999
Q ss_pred cEEEEEEEccc-c--CCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEE---EeecCCCe--EEEEEeeeCCCCCcc
Q psy7941 155 SAKLVCKAKGY-P--TPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT---KVTRSEMG--AYQCIAANGVPPTVS 226 (238)
Q Consensus 155 ~~~l~C~~~~~-p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~d~G--~y~C~~~n~~g~~~~ 226 (238)
.+.|.|.+.|. | .+.+.|++ ++..+... .......+.+. ++..+|.| .|+|.+.|..|. ..
T Consensus 205 ~v~l~C~~~g~~P~~~~~~~W~~-~~~~~~~~---------~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~-~~ 273 (450)
T 1z7z_I 205 QGTVVCSLDGLFPVSEAQVHLAL-GDQRLNPT---------VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQS-QE 273 (450)
T ss_dssp EEEEEEEEESCTTGGGCEEEEEE-TTEECCCE---------EEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEE-EE
T ss_pred cEEEEEEeeCCCCCCceEEEEeC-CCEeCCce---------EEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCcc-EE
Confidence 99999999987 7 67999999 44433211 11111112221 66899999 999999999884 36
Q ss_pred ceEEEEEEe
Q psy7941 227 KRLMLHVHC 235 (238)
Q Consensus 227 ~~~~l~V~~ 235 (238)
..+.|.|..
T Consensus 274 ~~~~l~V~~ 282 (450)
T 1z7z_I 274 TLQTVTIYS 282 (450)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEEec
Confidence 677788876
No 216
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}
Probab=99.78 E-value=3.1e-18 Score=126.86 Aligned_cols=180 Identities=16% Similarity=0.268 Sum_probs=107.2
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeeee----e
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIHE----H 82 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~----~ 82 (238)
+...+..+.+.+|+++.|.|.+.+. +.+.+.|||.... ....... .
T Consensus 4 v~q~p~~v~v~~G~~v~L~C~~~~~--------------------------~~~~v~W~r~~~~~~~~~~~~~~~~~~~~ 57 (253)
T 3to4_D 4 LEQNPRWRLVPRGQAVNLRCILKNS--------------------------QYPWMSWYQQDLQKQLQWLFTLRSPGDKE 57 (253)
T ss_dssp CEEECSEEEEESSCCEEEEEECSCT--------------------------TCCCEEEEEEETTCCEEEEEEECSTTCEE
T ss_pred EEeCCCeEEEeCCCcEEEEEEeCCC--------------------------CcceEEEEEECCCCCcEEEEEECCCccee
Confidence 3456778899999999999997532 2456999984211 1111100 0
Q ss_pred EeecCc-cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-------cceeeEEEEEc------CCcccccccCCce
Q psy7941 83 VITNNA-RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-------TKQMAFLEVVI------PPDISSEETSGDM 148 (238)
Q Consensus 83 ~~~~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-------~~~~~~l~v~~------~~~~~~~~~~~~~ 148 (238)
.....+ |+.+....... |.|.+++.+|+|.|+|.+.+... ....+.+.|.. +|.+.... +...
T Consensus 58 ~~~~~~~R~~~~~~~~~~--L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~-~~~~ 134 (253)
T 3to4_D 58 VKSLPGADYLATRVTDTE--LRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFE-PSEA 134 (253)
T ss_dssp EEEETTEEEEEECCSSSC--CEEEEESCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEE-CCHH
T ss_pred cCCccCCcEEEEeCCCCe--EEEccCChhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeC-CChh
Confidence 001123 77766544333 99999999999999999975421 12234566653 22222111 1111
Q ss_pred eecCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCCC---------CcceEEEeeceEEEEEeecCC-CeEEEEE
Q psy7941 149 MVPEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPPS---------SQKVFSVESEVLSLTKVTRSE-MGAYQCI 216 (238)
Q Consensus 149 ~~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~i~~~~~~d-~G~y~C~ 216 (238)
.+..|+.+.|.|.+.| +|.+ .+.|++ ++..+........ .... ....+.|.+.....+| .|.|+|.
T Consensus 135 ~~~~g~~~~L~C~~~g~~P~~i~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~g~-~~~~s~l~i~~~~~~d~~~~ytC~ 212 (253)
T 3to4_D 135 EISHTQKATLVCLATGFYPDHVELSWWV-NGKEVHSGVSTDPQPLKEQPALNDSR-YALSSRLRVSATFWQNPRNHFRCQ 212 (253)
T ss_dssp HHHHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEECTTEEECSSCEESSTTCTTCC-EEEEEEEEEEHHHHTCTTCEEEEE
T ss_pred hcccCCceEEEEEEceEECCcEEEEEEE-CCEECCCceecccccccccccCCCCC-EEEEEEEEECHHHhccCCCEEEEE
Confidence 2334689999999988 7777 899999 5555432110000 0111 1122357777777777 6699999
Q ss_pred eeeCC
Q psy7941 217 AANGV 221 (238)
Q Consensus 217 ~~n~~ 221 (238)
|.|..
T Consensus 213 v~h~~ 217 (253)
T 3to4_D 213 VQFYG 217 (253)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99975
No 217
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.78 E-value=7.7e-19 Score=134.70 Aligned_cols=178 Identities=16% Similarity=0.278 Sum_probs=108.3
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCc---eEEEEeCCceeeeeeeeeE-eec
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM---KVAWIKADTKAVLAIHEHV-ITN 86 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~W~~~~~~~~~~~~~~~-~~~ 86 (238)
+..++..+.+.+|+++.|.|.+.+. .|.+ .+.|+++++.......... ...
T Consensus 116 ~~~~p~~~~v~~G~~v~L~C~~~g~-------------------------~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~ 170 (323)
T 2wqr_A 116 YLSRPSPFDLFIRKSPTITCLVVDL-------------------------APSKGTVQLTWSRASGKPVNHSTRKEEKQR 170 (323)
T ss_dssp EECCCCHHHHHTSSCCEEEEEEEEE-------------------------CCCSSCCEEEEEETTCCCCCCCCCEEEECT
T ss_pred EEcCCCHHHhccCCeEEEEEEEecc-------------------------CCCCCceEEEEEECCCcccccccCCCccCC
Confidence 3455666667889999999998642 1223 7999997654332111111 112
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEE------cCCcccccccCCceeecCCCcEEEEE
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVV------IPPDISSEETSGDMMVPEGGSAKLVC 160 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~------~~~~~~~~~~~~~~~~~~g~~~~l~C 160 (238)
++++... ..|.|.+++.+|+|.|+|.+.+.... ....+.|. .+|.+....... ....|+.+.|.|
T Consensus 171 ~g~~~~~------~~L~I~~~~~~D~G~Y~C~a~n~~~~-~~~~~~v~~~~~~~~~P~v~~~~~~~--~~~~g~~~~l~C 241 (323)
T 2wqr_A 171 NGTLTVT------STLPVGTRDWIEGETYQCRVTHPHLP-RALMRSTTKTSGPRAAPEVYAFATPE--WPGSRDKRTLAC 241 (323)
T ss_dssp TSCEEEE------EEEECCHHHHHTTCCEEEEEECTTSS-SCEEEEECCCCSCCBCCEEEEEECCC--CTTCTTEEEEEE
T ss_pred CCCEEEE------EEEEECHHHccCCCCEEEEEECCCCC-CCeeeEEEccCCCCCCCEEEEeCCCh--HHhcCCcEEEEE
Confidence 3334322 28999999999999999999876432 22334442 334333221111 122399999999
Q ss_pred EEcc-ccCC-eEEEEeCCCeeeEeecC----CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941 161 KAKG-YPTP-KITWRREDNKEIIVRSN----PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP 223 (238)
Q Consensus 161 ~~~~-~p~~-~~~W~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~ 223 (238)
.+.| .|.+ .+.|++ ++..+..... ......-.....+.|.|..+..+|.|.|+|.|.|..+.
T Consensus 242 ~~~g~~p~~~~v~W~k-~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 309 (323)
T 2wqr_A 242 LIQNFMPEDISVQWLH-NEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS 309 (323)
T ss_dssp EEEEEBSSCCEEEEEE-TTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred EeeeeeCCCcEEEEEE-CCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence 9988 4544 899999 5554422100 00000001122346899999999999999999998874
No 218
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=99.78 E-value=1.4e-17 Score=124.14 Aligned_cols=160 Identities=18% Similarity=0.224 Sum_probs=106.7
Q ss_pred EEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCc--eEEEEeCCceeeeeeeeeEeecCccEEEEEcC
Q psy7941 19 TIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM--KVAWIKADTKAVLAIHEHVITNNARLSVTHND 96 (238)
Q Consensus 19 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (238)
.+.+|+++.|.|.+.+. .|.+ .+.|++++..+.. .....+.
T Consensus 14 ~v~~G~~v~l~C~~~g~-------------------------~p~p~~~v~W~k~~~~l~~----~~~~~~~-------- 56 (265)
T 2oz4_A 14 VLEVDTQGTVVCSLDGL-------------------------FPVSEAQVHLALGDQRLNP----TVTYGND-------- 56 (265)
T ss_dssp EEETTEEEEEEEEEESC-------------------------SCGGGCEEEEEETTEECCC----EEEECSS--------
T ss_pred eEecCCCEEEEEEccCC-------------------------CCCcceEEEEEeCCEECCc----eEeeCCC--------
Confidence 67899999999999641 2333 7999998765432 1111111
Q ss_pred CCeEEEEEc---ccCcccCe--EEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCeE
Q psy7941 97 ANTWTLNIR---SVRREDRG--YYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKI 170 (238)
Q Consensus 97 ~~~~~L~i~---~~~~~d~G--~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~ 170 (238)
.|.+. .++.+|.| .|+|.+.+. +.....+.|.|...|.+.+. .....+.+|+.+.|.|.+. |.+.+
T Consensus 57 ----~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~~~l~V~~~p~p~~~--~~~~~v~~G~~v~l~C~~~--p~~~i 128 (265)
T 2oz4_A 57 ----SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVI--LTKPEVSEGTEVTVKCEAH--PRAKV 128 (265)
T ss_dssp ----EEEEEEEEEECGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEE--ESCSEEETTCEEEEEEECC--TTSEE
T ss_pred ----eEEEEeecccccccCCcceEEEEEecCCCCcEEEEEEEEeCCCCceee--cCCceecCCCcEEEEEEcc--CCCEE
Confidence 33333 33778887 599999876 33445667888764443322 2334577899999999988 88999
Q ss_pred EEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC-CCCc--cceEEEEEEeec
Q psy7941 171 TWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV-PPTV--SKRLMLHVHCTY 237 (238)
Q Consensus 171 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~-g~~~--~~~~~l~V~~~p 237 (238)
.| ++..+.. ......|.+..+..+|.|.|+|.|.|.. |... +..+.|.|..+|
T Consensus 129 ~W---~g~~~~~-----------~~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p 184 (265)
T 2oz4_A 129 TL---NGVPAQP-----------LGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGP 184 (265)
T ss_dssp EE---SSCSSSC-----------CSSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEE
T ss_pred EE---CCEEccC-----------CCCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCC
Confidence 99 3333311 0122458888888999999999998655 6432 267888888876
No 219
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=99.78 E-value=2.9e-18 Score=137.51 Aligned_cols=179 Identities=20% Similarity=0.254 Sum_probs=112.5
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eeeee------eeE
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLAIH------EHV 83 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~~~------~~~ 83 (238)
.+..+.+.+|+++.|.|.+..... ..+.+.|+|+.. .. ..... ...
T Consensus 6 ~~~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~ 61 (457)
T 1hzh_H 6 QSGAEVKKPGASVKVSCQASGYRF------------------------SNFVIHWVRQAPGQRFEWMGWINPYNGNKEFS 61 (457)
T ss_dssp ECCCEEECTTCCEEECEEEESSCG------------------------GGSCEEEEEECTTSCCEEEEEEETTTTEEEEC
T ss_pred cCCceEEcCCCCEEEEEEecCccc------------------------cCcEEEEEEeCCCCCcEEEEEEecCCCceecC
Confidence 345678999999999999964310 134699998532 11 11110 000
Q ss_pred eecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCC-------------cceeeEEEEEc----CCcccccccC
Q psy7941 84 ITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPM-------------TKQMAFLEVVI----PPDISSEETS 145 (238)
Q Consensus 84 ~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-------------~~~~~~l~v~~----~~~~~~~~~~ 145 (238)
....+|+.+.... ...++|.|.+++.+|+|.|+|.+.+... ....+.+.|.. +|.+... .
T Consensus 62 ~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~--~ 139 (457)
T 1hzh_H 62 AKFQDRVTFTADTSANTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPL--A 139 (457)
T ss_dssp TTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEE--C
T ss_pred ccccCceEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEec--C
Confidence 1124688776543 4667999999999999999999976532 22345677764 2332221 1
Q ss_pred CceeecCCCcEEEEEEEccc-cC-CeEEEEeCCCeeeEeecC---CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeC
Q psy7941 146 GDMMVPEGGSAKLVCKAKGY-PT-PKITWRREDNKEIIVRSN---PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANG 220 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~~~~-p~-~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~ 220 (238)
....+.+|+.+.|.|.+.|. |. +.+.|++++ ..+..... ...... ....+.|.|..+..+| |.|+|.|.|.
T Consensus 140 ~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~~-~~~~~~~~~~~~~~~~~--~~~~s~L~i~~~~~~d-G~Y~C~a~n~ 215 (457)
T 1hzh_H 140 PSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGA-LTSGVHTFPAVLQSSGL--YSLSSVVTVPSSSLGT-QTYICNVNHK 215 (457)
T ss_dssp CCSCCCTTCCEEEEEEEESBBSCCCEEEETTTT-BCTTEEEEEEEECTTSC--EEEEEEEEECSGGGGT-SCCEEEEEEG
T ss_pred ccccccCCCcEEEEEEEeEEeCCCeEEEEEeCC-EeccceEcCceECCCCC--EEEEEEEEecccccCC-ceEEEEEEeC
Confidence 12235789999999999885 65 799999944 22110000 000011 1122468899898889 9999999997
Q ss_pred CC
Q psy7941 221 VP 222 (238)
Q Consensus 221 ~g 222 (238)
.+
T Consensus 216 ~~ 217 (457)
T 1hzh_H 216 PS 217 (457)
T ss_dssp GG
T ss_pred CC
Confidence 76
No 220
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.77 E-value=7.5e-17 Score=115.84 Aligned_cols=174 Identities=19% Similarity=0.319 Sum_probs=106.1
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee-eeeeeeeEeecC
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA-VLAIHEHVITNN 87 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~-~~~~~~~~~~~~ 87 (238)
+...+..+.+.+|+++.|.|.+... .+.+.|+|+.. .. ............
T Consensus 4 v~q~p~~v~v~~G~~v~L~C~~~~~---------------------------~~~v~W~r~~~~~~~~~~~~~~~~~~~~ 56 (207)
T 1ypz_E 4 VEQSPSALSLHEGTDSALRCNFTTT---------------------------MRSVQWFRQNSRGSLISLFYLASGTKEN 56 (207)
T ss_dssp EEESCSEEEEETTCCEEEEEEESSC---------------------------CSEEEEEEECTTSCCEEEEEESSEEEEE
T ss_pred cEECCCeEEEccCCcEEEEEEEeCC---------------------------CeEEEEEEeCCCCCeEEEEEEccCCccC
Confidence 4567888999999999999998632 12599999642 11 111111111235
Q ss_pred ccEEEEEc--CCCeEEEEEcccCcccCeEEEEEEecCCC------------cceeeEEEEEcCCcccccccCCceeecCC
Q psy7941 88 ARLSVTHN--DANTWTLNIRSVRREDRGYYMCQVNTNPM------------TKQMAFLEVVIPPDISSEETSGDMMVPEG 153 (238)
Q Consensus 88 ~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~------------~~~~~~l~v~~~~~~~~~~~~~~~~~~~g 153 (238)
+|+.+... ....++|.|.+++.+|+|.|+|.+.+... ....+.|.|........ ...+.+..+
T Consensus 57 ~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~---~P~v~~~~~ 133 (207)
T 1ypz_E 57 GRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPA---KPSVFIMKN 133 (207)
T ss_dssp TTEEEEECTTTCSEEEEEECSCCGGGCEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCC---CCEEEEEEE
T ss_pred CCEEEEeccCCCCEEEEEECCCCHHHCEEEEEEEecCCcccccccccceeeecCccEEEEccCCCCCC---CCeEEEeCC
Confidence 67877654 25677999999999999999999976421 11235677764221111 111222222
Q ss_pred CcEEEEEEEcc-ccC-CeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeec-CCCeEEEEEeeeCCC
Q psy7941 154 GSAKLVCKAKG-YPT-PKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTR-SEMGAYQCIAANGVP 222 (238)
Q Consensus 154 ~~~~l~C~~~~-~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~y~C~~~n~~g 222 (238)
.+.|.|.+.+ +|. +.+.|+++ ..+.... .......++.+.+..... +|.|.|+|.+.|..+
T Consensus 134 -~~~l~C~~~g~~P~~~~v~W~~~--~~l~~~~-----~~~~~~~~g~y~~~~~~~~~~~~~ytC~v~~~~~ 197 (207)
T 1ypz_E 134 -GTNVACLVKDFYPKEVTISLRSS--KKIVEFD-----PAIVISPSGKYSAVKLGQYGDSNSVTCSVQHNSE 197 (207)
T ss_dssp -TTEEEEEEEEESSSCCEEEEECS--SEEEECC-----CEEEECTTSSEEEEECEEESSTTTCEEEEEETTE
T ss_pred -CCeEEEEEeeEeCCCeEEEEecC--CcccCCc-----cceEEcCCCcEEEEEeecccCCCcEEEEEEECCc
Confidence 3799999987 454 69999995 3443211 111111223344433443 678999999999876
No 221
>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...
Probab=99.77 E-value=1.5e-17 Score=121.42 Aligned_cols=178 Identities=17% Similarity=0.271 Sum_probs=107.1
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eeeeee------eEe
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLAIHE------HVI 84 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~~~------~~~ 84 (238)
+..+.+.+|+++.|.|.+..... ....+.||+..... ...... ...
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~ 62 (230)
T 3n9g_H 7 SGAEVRKPGASTKVSCKASGYTF------------------------THYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQ 62 (230)
T ss_dssp CCCEEECTTCCEEEEEEEESSCG------------------------GGSCEEEEEECTTSCEEEEEEECTTTCCEEECG
T ss_pred cCCEEEcCCCCEEEEEEeeccee------------------------cCcEEEEEEECCCCCcEEEEEEecCCCceecCc
Confidence 44688999999999999964211 13459999853211 111100 001
Q ss_pred ecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCC---------CcceeeEEEEEc----CCcccccccCCceee
Q psy7941 85 TNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNP---------MTKQMAFLEVVI----PPDISSEETSGDMMV 150 (238)
Q Consensus 85 ~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~---------~~~~~~~l~v~~----~~~~~~~~~~~~~~~ 150 (238)
...+|+.+.... ...++|.|.+++.+|+|.|+|.+.+.. .....+.|.|.. +|.+... .....+
T Consensus 63 ~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~--~~~~~~ 140 (230)
T 3n9g_H 63 KLQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPL--APSSKS 140 (230)
T ss_dssp GGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEE--CCCCCC
T ss_pred ccCCcEEEEecCCCCEEEEEECCCChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEec--CCCccc
Confidence 124688876654 377899999999999999999997643 111334566652 2222211 122234
Q ss_pred cCCCcEEEEEEEcc-cc-CCeEEEEeCCCeeeE-eecC--CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 151 PEGGSAKLVCKAKG-YP-TPKITWRREDNKEII-VRSN--PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 151 ~~g~~~~l~C~~~~-~p-~~~~~W~~~~~~~~~-~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
..|+.+.|.|.+.+ +| .+.+.| . +..... .... ....... ....+.|.|.....+| |.|+|.+.|..+
T Consensus 141 ~~g~~v~L~C~~~~~~P~~~~v~W-~-~~~~~~~~~~~~~~~~~~g~-~~~~s~L~i~~~~~~~-~~ytC~v~h~~~ 213 (230)
T 3n9g_H 141 TSGGTAALGCLVKDYFPEPVTVSW-N-SGALTSGVHTFPAVLQSSGL-YSLSSVVTVPSSSLGT-QTYICNVNHKPS 213 (230)
T ss_dssp CTTCEEEEEEEEEEEBSSCCEEEE-G-GGTBCTTEEECCCEECTTSC-EEEEEEEEEESTTBTT-BCCEEEEEEGGG
T ss_pred cCCCCEEEEEEEEeEECCCEEEEE-C-CcccCCCeEeCCceECCCCC-EEEEEEEEECHHHcCC-CeEEEEEEECCC
Confidence 57899999999988 45 347999 3 322110 0000 0000111 1223368888888888 999999999876
No 222
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.77 E-value=1.5e-17 Score=132.90 Aligned_cols=182 Identities=19% Similarity=0.290 Sum_probs=113.0
Q ss_pred ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-eeee---eee------ee
Q psy7941 13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-KAVL---AIH------EH 82 (238)
Q Consensus 13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~~~---~~~------~~ 82 (238)
..+..+.+.+|+++.|.|.+..... +.+.+.|+|+.. .... ... ..
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~ 60 (444)
T 1igt_B 5 QESGGGLVQPGGSLKLSCATSGFTF------------------------SDYYMYWVRQTPEKRLEWVAYISNGGGSTYY 60 (444)
T ss_dssp EEECCCEECTTCCEEEEEEEESSCG------------------------GGSCEEEEEECTTCCEEEEEEECTTSSCEEC
T ss_pred ecCCCeEEcCCCCEEEEEEcCCCcc------------------------CCceEEEEEeCCCCCcEEEEEEecCCCceec
Confidence 3455678999999999999964211 134699998642 2111 100 00
Q ss_pred EeecCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCCCc----ceeeEEEEEc----CCcccccccCCceeecCC
Q psy7941 83 VITNNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPMT----KQMAFLEVVI----PPDISSEETSGDMMVPEG 153 (238)
Q Consensus 83 ~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~----~~~~~l~v~~----~~~~~~~~~~~~~~~~~g 153 (238)
.....+|+.+... ....++|.|.+++.+|+|.|.|.+.+.... ...+.|.|.. +|.+... .....+.+|
T Consensus 61 ~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~--~~~~~~~~g 138 (444)
T 1igt_B 61 PDTVKGRFTISRDNAKNTLYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPL--APVCGDTTG 138 (444)
T ss_dssp CGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEE--CCCSSCCCS
T ss_pred CcccCCceEEEEeCCCCeEEEEECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEe--cccccCCCC
Confidence 0112457777653 245679999999999999999999875322 2234566653 2322211 111224689
Q ss_pred CcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCCC-CcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941 154 GSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPPS-SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP 223 (238)
Q Consensus 154 ~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~ 223 (238)
+.+.|.|.+.| .|.| .+.|++++.. ......... .... ....+.|.|..+..+| |.|+|.|.|..|.
T Consensus 139 ~~v~L~C~~~g~~P~p~~v~W~~~~~~-~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~ 208 (444)
T 1igt_B 139 SSVTLGCLVKGYFPEPVTLTWNSGSLS-SGVHTFPAVLQSDL-YTLSSSVTVTSSTWPS-QSITCNVAHPASS 208 (444)
T ss_dssp SCEEEEEEEEEEBSSCCEEEEGGGTBC-TTEEECCCEEETTE-EEEEEEEEECSTTTTT-SCCEEEEEETTTT
T ss_pred CcEEEEEEEcceeCCCcEEEEecCCCC-CCeEecCccccCCc-EEEEEEEEEchhhcCC-CeEEEEEEeCCCC
Confidence 99999999988 4777 9999995432 110000000 0011 1123468888888889 9999999999884
No 223
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.76 E-value=6.3e-18 Score=139.43 Aligned_cols=177 Identities=17% Similarity=0.241 Sum_probs=108.3
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE---eecCccEE
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV---ITNNARLS 91 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~---~~~~~~~~ 91 (238)
.+.+.+.+|+++.|+|.+.. +.|.+.++|++++........... .....|..
T Consensus 373 ~~~~~~~~G~~v~L~C~~~~-------------------------~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~ 427 (581)
T 3o3u_N 373 AQNITARIGEPLVLKCKGAP-------------------------KKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVAR 427 (581)
T ss_dssp CEEEEEETTSCEEECCTTCC-------------------------SSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSE
T ss_pred hcccceecCCcEEEeeeecC-------------------------CCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEE
Confidence 44578899999999999731 234668999997653211100000 00122333
Q ss_pred EEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc-ccCC
Q psy7941 92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTP 168 (238)
Q Consensus 92 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~ 168 (238)
+... .+|.|.+++.+|+|.|+|.+.+.... ...+.|.|..+|..+............+..+.|.|.+.+ +|.|
T Consensus 428 ~~~~----~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P~~ 503 (581)
T 3o3u_N 428 VLPN----GSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAG 503 (581)
T ss_dssp ECTT----SCEEESSCCGGGCEEEEEEEECTTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEBSCC
T ss_pred EcCC----ceEEEeccccccCeEEEEEEEcCCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCCCCC
Confidence 3222 28999999999999999999875443 355678887765543322222233333444567999988 6999
Q ss_pred eEEEEeCCCeeeEeecCCCC---------CcceEEEeeceEEEEEeecCC-CeEEEEEeeeCCC
Q psy7941 169 KITWRREDNKEIIVRSNPPS---------SQKVFSVESEVLSLTKVTRSE-MGAYQCIAANGVP 222 (238)
Q Consensus 169 ~~~W~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~n~~g 222 (238)
.++|++ ++..+........ .... ..-.+.|.|..+..+| .|.|+|.+.|..+
T Consensus 504 ~i~W~~-~g~~l~~~~~~~~~~~~~~~~~~~g~-y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~ 565 (581)
T 3o3u_N 504 TLSWHL-DGKPLVPNEKGVSVKEQTRRHPETGL-FTLQSELMVTPARGGDPRPTFSCSFSPGLP 565 (581)
T ss_dssp EEEEEE-TTEECCTTSTTEEEEEEEEECTTTCC-EEEEEEEEECCCTTSCSCCCEEEEEECSSC
T ss_pred eEEEEE-CCEECCCCCCeEEEEeeeEEcCCCce-EEEEEEEEEEeccccCCCceEEEEEeccCC
Confidence 999999 5554432110000 0000 1112368888887455 7799999999874
No 224
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.76 E-value=7e-17 Score=116.62 Aligned_cols=188 Identities=14% Similarity=0.164 Sum_probs=118.0
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
..+|.| ..+..+.+.+|+++.|.|.+.. .|.+.+.|++++..+...
T Consensus 17 ~~~P~~-~~p~~~~~~~G~~v~l~C~~~g--------------------------~p~p~i~W~~~g~~l~~~------- 62 (215)
T 3mtr_A 17 MYAPKL-QGPVAVYTWEGNQVNITCEVFA--------------------------YPSATISWFRDGQLLPSS------- 62 (215)
T ss_dssp CEEEEE-ECCSEEEECTTCCEEEEEEEEE--------------------------ESCCEEEEEETTEESSCS-------
T ss_pred ecCCcc-cCCceEEEECCCCEEEEEEEee--------------------------cCCCEEEEEECCeECCCC-------
Confidence 346777 5677789999999999999863 446789999987654321
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEc-
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK- 163 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~- 163 (238)
...++.+... ....+|.|.+++.+|.|.|+|.+.|... ....+.+.|..+|...... .....+..+.|.|...
T Consensus 63 ~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~----~~~~~~~~~~l~w~~p~ 137 (215)
T 3mtr_A 63 NYSNIKIYNT-PSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSID----QVEPYSSTAQVQFDEPE 137 (215)
T ss_dssp SSCSEEEEEE-TTEEEEEECCCSGGGCEEEEEEEECSSCEEEEEEEEEECCCCCCCEEE----EEEEETTEEEEEEECCS
T ss_pred CCccEEEecC-CCeeEEEEecCChhhCeEEEEEEEECCCceEEEEEEEECCCCCCCcce----EEEEecceEEEEEecCC
Confidence 1134444332 2244899999999999999999987643 4445566666555543211 1123456788888632
Q ss_pred ---cccCC--eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 164 ---GYPTP--KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 164 ---~~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
+.|.. .+.|..++......... ..........+.|.++...+.|.|+|.|.|..|.. ..+..+.|.-+|
T Consensus 138 ~~~~~pi~~y~v~~~~~~~~~w~~~~~----~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s-~~S~~~~v~T~p 211 (215)
T 3mtr_A 138 ATGGVPILKYKAEWRAVGEEVWHSKWY----DAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLG-EISAASEFKTQP 211 (215)
T ss_dssp CCCSSCEEEEEEEEEETTCCCCEEEEE----EHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBC-CCCCCEEEECCC
T ss_pred ccCCCceEEEEEEEEECCCCccccccc----ccccccccccEEECCCCCCCEEEEEEEEEeCCccc-CcccceeeEecc
Confidence 23433 47788744321110000 00000112579999999999999999999999954 333344455544
No 225
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Probab=99.75 E-value=9.9e-18 Score=120.46 Aligned_cols=170 Identities=16% Similarity=0.254 Sum_probs=91.2
Q ss_pred EecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-eeEeecCccEEEEEcCCCe
Q psy7941 21 AQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-EHVITNNARLSVTHNDANT 99 (238)
Q Consensus 21 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 99 (238)
.+|+++.|.|.+.+.... .|.+.+.|+|++..+..... ......++.+.+..
T Consensus 16 ~~G~~v~L~C~~~g~~p~----------------------~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~----- 68 (207)
T 1l6x_A 16 MISRTPEVTCVVVDVSHE----------------------DPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVS----- 68 (207)
T ss_dssp CTTSCCEEEEEEEEECSS----------------------SCCCEEEEEETTEEECCCEECCCEECTTSCEEEEE-----
T ss_pred ecCCceEEEEEEecccCC----------------------CCCeEEEEEECCccccCcccCCceeccCCcEEEEE-----
Confidence 689999999999743210 01247999998765432111 01111223333322
Q ss_pred EEEEEcccCcccCeEEEEEEecCCCcc-eeeEEE----EEcCCcccccccCCceeecCCCcEEEEEEEcc-ccCC-eEEE
Q psy7941 100 WTLNIRSVRREDRGYYMCQVNTNPMTK-QMAFLE----VVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTP-KITW 172 (238)
Q Consensus 100 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~----v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~~~W 172 (238)
.|.|......|+|.|+|.+.+..... ....+. +..+|.+...... ...+ .+..+.|.|.+.| +|.+ .+.|
T Consensus 69 -~l~i~~~d~~d~g~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~-~~~~-~~~~~~L~C~~~g~~P~~~~v~W 145 (207)
T 1l6x_A 69 -VLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPS-RDEL-TKNQVSLTCLVKGFYPSDIAVEW 145 (207)
T ss_dssp -EEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEECCC-GGGG-GSSEEEEEEEEEEEBSSCCEEEE
T ss_pred -EEEEEHHHccCCceEEEEEEcCcCCcceEEEeccCCCCCcCCEEEEECCC-hHHh-cCCcEEEEEEEeCeECCCeEEEE
Confidence 34444444445999999998764422 222231 2234443322111 1112 3556999999998 5553 9999
Q ss_pred EeCCCeeeEeecCCC---CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 173 RREDNKEIIVRSNPP---SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 173 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
++ ++..+....... ..... ....+.|.+.....+|.|.|+|.|.|...
T Consensus 146 ~k-~g~~~~~~~~~~~~~~~~gt-~~~~s~l~i~~~~~~~~g~YtC~a~n~~l 196 (207)
T 1l6x_A 146 ES-NGQPENNYKTTPPVLDSDGS-FFLYSKLTVDKSRWQQGNVFSCSVMHEAL 196 (207)
T ss_dssp EE-TTEEECCEEECCCEECTTSC-EEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred EE-CCeeccCccccCceECCCCC-EEEEEEEEECHHHcCCCCEEEEEEEcCCc
Confidence 99 555443211000 00010 11112344554455679999999999874
No 226
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}
Probab=99.75 E-value=7.5e-18 Score=123.16 Aligned_cols=180 Identities=16% Similarity=0.212 Sum_probs=107.4
Q ss_pred ccce-eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCC--ceEEEEeCCcee-eeeeeeeE
Q psy7941 8 EPDF-LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA--MKVAWIKADTKA-VLAIHEHV 83 (238)
Q Consensus 8 ~p~~-~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~W~~~~~~~-~~~~~~~~ 83 (238)
+|.+ +..+..+.+..|+++.|.|.+.+. .|. ..+.|++++..+ ........
T Consensus 12 ~P~v~~~~p~~~~v~~G~~v~L~C~~~g~-------------------------~P~~p~~v~W~~~g~~~~~~~~~~~~ 66 (231)
T 2w59_A 12 PIQLYAIPPSPGELYISLDAKLRCLVVNL-------------------------PSDSSLSVTWTREKSGNLRPDPMVLQ 66 (231)
T ss_dssp CCEEEEECCCHHHHHTSCCCEEEEEEEEE-------------------------SCCTTCEEEEECSSSSCCCCCCCEEE
T ss_pred CCEEEEeCcChhhcccCCceEEEEEEeCc-------------------------cCCCCeEEEEEcCCeeccccccccce
Confidence 4554 356666677899999999999742 122 369999877654 11111111
Q ss_pred eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEE------cCCcccccccCCceeecCCCcEE
Q psy7941 84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVV------IPPDISSEETSGDMMVPEGGSAK 157 (238)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~------~~~~~~~~~~~~~~~~~~g~~~~ 157 (238)
...++.+... .+|.|.+++.+|+|.|+|.+.+.... ....+.|. .+|.+...... ...+ .+..+.
T Consensus 67 ~~~~g~~~~~------s~L~I~~~~~~D~g~Y~C~~~~~~~~-~~~~~~v~~~~~~~~~P~v~v~~~~-~~~~-~~~~~~ 137 (231)
T 2w59_A 67 EHFNGTYSAS------SAVPVSTQDWLSGERFTCTVQHEELP-LPLSKSVYRNTGPTTPPLIYPFAPH-PEEL-SLSRVT 137 (231)
T ss_dssp ECTTSCEEEE------EEEECCHHHHHTTCCEEEEEECTTCS-SCEEEEECCCCSCCBCCEEEEECCC-GGGG-GSSEEE
T ss_pred ECCCCcEEEE------EEEEecchhccCCCEEEEEEEcCCCC-CceEEEEecCCCCCcCCEEEEeCCC-HHHh-ccCceE
Confidence 1223344322 28999999999999999999876432 33344443 23333221111 1112 245799
Q ss_pred EEEEEccc-cC-CeEEEEeCCCeeeEeecCCC---C-C--------cc-eEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 158 LVCKAKGY-PT-PKITWRREDNKEIIVRSNPP---S-S--------QK-VFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 158 l~C~~~~~-p~-~~~~W~~~~~~~~~~~~~~~---~-~--------~~-~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
|.|.+.|. |. +.+.|++ ++..+....... . . .. -.....+.|.|.....+|.|.|+|.|.|...
T Consensus 138 L~C~~~g~~P~~~~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l 216 (231)
T 2w59_A 138 LSCLVRGFRPRDIEIRWLR-DHRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEAL 216 (231)
T ss_dssp EEEEEEEEBSSCCEEEEEE-TTEECCGGGCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred EEEEEEeccCCCcEEEEEE-CCEECCCcccccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCC
Confidence 99999984 53 6999999 555443211000 0 0 00 0111223577777777889999999999875
No 227
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.74 E-value=4.2e-18 Score=136.08 Aligned_cols=170 Identities=12% Similarity=0.145 Sum_probs=102.0
Q ss_pred EEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCc-eEEEEeCCceeeeeeeeeEeecCccEEEEEcCCC
Q psy7941 20 IAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM-KVAWIKADTKAVLAIHEHVITNNARLSVTHNDAN 98 (238)
Q Consensus 20 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (238)
+.+|+++.|.|.+.+. .|.+ .+.|++++............. .+.+....
T Consensus 135 ~~~g~~v~L~C~~~g~-------------------------~P~p~~v~W~~~~~~~~~~~~~~~~~-~~~~~~~s---- 184 (444)
T 1igt_B 135 DTTGSSVTLGCLVKGY-------------------------FPEPVTLTWNSGSLSSGVHTFPAVLQ-SDLYTLSS---- 184 (444)
T ss_dssp CCCSSCEEEEEEEEEE-------------------------BSSCCEEEEGGGTBCTTEEECCCEEE-TTEEEEEE----
T ss_pred CCCCCcEEEEEEEcce-------------------------eCCCcEEEEecCCCCCCeEecCcccc-CCcEEEEE----
Confidence 4689999999998642 1343 799999876532111111111 13444332
Q ss_pred eEEEEEcccCcccCeEEEEEEecCCCcc-eeeEEEE------------------EcCCcccccccCCcee-ecCCCcEEE
Q psy7941 99 TWTLNIRSVRREDRGYYMCQVNTNPMTK-QMAFLEV------------------VIPPDISSEETSGDMM-VPEGGSAKL 158 (238)
Q Consensus 99 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v------------------~~~~~~~~~~~~~~~~-~~~g~~~~l 158 (238)
.|.|.++..+| |.|+|.+.+..... ....+.+ ..+|.+... .+.... +..|+.+.|
T Consensus 185 --~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~-~p~~~~~~~~G~~~~L 260 (444)
T 1igt_B 185 --SVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIF-PPKIKDVLMISLSPIV 260 (444)
T ss_dssp --EEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEE-CCCHHHHHCTTSCCEE
T ss_pred --EEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceEEec-CCchhheeecCCCcEE
Confidence 79999999999 99999998764422 2222211 012222111 111112 478999999
Q ss_pred EEEEcccc----CCeEEEEeCCCeeeEeecCCCCC--cceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 159 VCKAKGYP----TPKITWRREDNKEIIVRSNPPSS--QKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 159 ~C~~~~~p----~~~~~W~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
.|.+.|.| .+.+.|+++ +..+......... ........+.|.|.++..+|.|.|+|.|.|..|..
T Consensus 261 ~C~~~g~~~~p~~~~v~W~k~-~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~ 331 (444)
T 1igt_B 261 TCVVVDVSEDDPDVQISWFVN-NVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPA 331 (444)
T ss_dssp EEEEEEECTTCCCCEEEEEET-TEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSS
T ss_pred EEEEeecccCCCCeEEEEEEC-CccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCC
Confidence 99999873 359999994 4433211100000 00001233479999999999999999999998843
No 228
>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H
Probab=99.74 E-value=5.4e-17 Score=118.17 Aligned_cols=179 Identities=15% Similarity=0.209 Sum_probs=105.2
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeeee------eEe
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIHE------HVI 84 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~------~~~ 84 (238)
+..+.+.+|+++.|.|.+.... .+...+.||+.... ....... ...
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~------------------------~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~ 62 (226)
T 3mlr_H 7 SGGEVKQPGQSLKISCKSSGYN------------------------FLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSP 62 (226)
T ss_dssp CCCEEECTTCCEEEEEEEESSC------------------------GGGSCEEEEEECTTSCCEEEEEEETTTTEEEECT
T ss_pred CCCEEEecCCCEEEEEEecCcc------------------------ccCCEEEEEEECCCCCcEEEEEEecCCCccccCc
Confidence 3468899999999999996421 11346999985321 1111110 001
Q ss_pred ecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCC----------CcceeeEEEEEcC----CcccccccCCcee
Q psy7941 85 TNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNP----------MTKQMAFLEVVIP----PDISSEETSGDMM 149 (238)
Q Consensus 85 ~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~----------~~~~~~~l~v~~~----~~~~~~~~~~~~~ 149 (238)
...+||.+.... ...++|.|.+++.+|+|.|+|.+.+.. .....+.+.|... |.+.. ......
T Consensus 63 ~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~--~~~~~~ 140 (226)
T 3mlr_H 63 SFEGQVTMSVDKSISTAYLQWTTLQASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFP--LAPSSK 140 (226)
T ss_dssp TTBTTBEEEEEGGGTEEEEEESSCCGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEE--EEEEEC
T ss_pred ccCCcEEEEecCCCCEEEEEECCCCcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEE--ecCccc
Confidence 124678776543 367899999999999999999986532 0112334666432 22221 111223
Q ss_pred ecCCCcEEEEEEEcc-cc-CCeEEEEeCCCeeeEeecC--CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 150 VPEGGSAKLVCKAKG-YP-TPKITWRREDNKEIIVRSN--PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 150 ~~~g~~~~l~C~~~~-~p-~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
+..|..+.|.|.+.+ +| .+.+.| .+.......... ....... ....+.|.|.....+| |.|+|.+.|..+
T Consensus 141 ~~~g~~~~l~C~~~~~~p~~~~v~W-~~~~~~~~~~~~~~~~~~~g~-~~~~s~L~i~~~~~~~-~~ytC~v~h~~~ 214 (226)
T 3mlr_H 141 STSGGTAALGCLVKDYFPEPVTVSW-NSGALTSGVHTFPAVLQSSGL-YSLSSVVTVPSSSLGT-QTYICNVNHKPS 214 (226)
T ss_dssp STTSSEEEEEEEEEEEBSSCCEEEE-GGGTCCTTEEECCCEECTTSC-EEEEEEEEEEGGGTTT-CCCEEEEEEGGG
T ss_pred ccCCCCEEEEEEEEEEECCCeEEEE-CCccccCCeEeCCcEECCCCC-EEEEEEEEECHhHcCC-CeEEEEEEECCC
Confidence 457899999999988 55 458999 322211100000 0000111 1122368888888888 999999999876
No 229
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.74 E-value=4.9e-18 Score=135.35 Aligned_cols=182 Identities=18% Similarity=0.280 Sum_probs=112.0
Q ss_pred ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-eeeeeeee---------e
Q psy7941 13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-KAVLAIHE---------H 82 (238)
Q Consensus 13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~~~~~~~---------~ 82 (238)
..+..+.+.+|+++.|.|.+.... .+.+.+.|+|++. ........ .
T Consensus 4 ~~~~~~~v~~G~~v~L~C~~~~~~------------------------~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~ 59 (434)
T 1igy_B 4 QESGAELARPGASVKMSCKASGYT------------------------FTTYTIHWIKQRPGQGLEWIGYINPSSVYTNY 59 (434)
T ss_dssp ECCCCCEECTBCCEEECCEECSSC------------------------GGGCCCEEEEECTTCCEEEEEECCSSSCCCCC
T ss_pred ECCCCeEecCCCCEEEEEEccCCc------------------------ccCceEEEEEECCCCCCEEEEEEccCCCceec
Confidence 345667899999999999996421 0135699999642 11110000 0
Q ss_pred EeecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEc----CCcccccccCCceeecCCCcE
Q psy7941 83 VITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVI----PPDISSEETSGDMMVPEGGSA 156 (238)
Q Consensus 83 ~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~----~~~~~~~~~~~~~~~~~g~~~ 156 (238)
.....+|+.+.... ...++|.|.+++.+|+|.|+|.+.+.. .....+.|.|.. +|.+... .....+.+|+.+
T Consensus 60 ~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~--~~~~~~~~G~~v 137 (434)
T 1igy_B 60 NQRFKDKATLTRDRSSNTANIHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPL--APGSAAQTNSMV 137 (434)
T ss_dssp CGGGTTTEECCBCGGGCBBCEEECSBCGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEE--CCCCCCCCTTEE
T ss_pred CccccccEEEEEECCCCEEEEEECCCChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEc--CCccccCCCCcE
Confidence 01124566655432 245689999999999999999997642 223445677753 2333221 111235689999
Q ss_pred EEEEEEccc-cCC-eEEEEeCCCeeeEeecCCC-CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941 157 KLVCKAKGY-PTP-KITWRREDNKEIIVRSNPP-SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP 223 (238)
Q Consensus 157 ~l~C~~~~~-p~~-~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~ 223 (238)
.|.|.+.|. |.| .+.|++++ .......... ..... ....+.|.|..+..+| |.|+|.|.|..|.
T Consensus 138 ~L~C~~~g~~P~p~~v~W~k~~-~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~ 204 (434)
T 1igy_B 138 TLGCLVKGYFPEPVTVTWNSGS-LSSGVHTFPAVLQSDL-YTLSSSVTVPSSPRPS-ETVTCNVAHPASS 204 (434)
T ss_dssp EEEEEEEEEBSSCCEEEETTTT-BCSSEEECCCEECSSC-EEEEEEEEEETTTTTS-SCCEEEEECTTTT
T ss_pred EEEEEEeeecCCCeEEEEeeCC-cCCCeEecCceecCCc-EEEEEEEEEcchhcCC-CcEEEEEEeCCCC
Confidence 999999885 776 99999954 3211110000 00011 1123468888888888 9999999999884
No 230
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*
Probab=99.74 E-value=1.4e-17 Score=122.18 Aligned_cols=182 Identities=16% Similarity=0.261 Sum_probs=101.9
Q ss_pred ccce-eccCceeE-EEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCc-eEEEEeCCceeeeeeee-eE
Q psy7941 8 EPDF-LYPLENVT-IAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM-KVAWIKADTKAVLAIHE-HV 83 (238)
Q Consensus 8 ~p~~-~~~~~~~~-v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~~~~~~~~~~~~~-~~ 83 (238)
.|.+ +.++.... +.+|+++.|.|.+.+... .|.+ .+.|+++++.+...... ..
T Consensus 15 ~P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~-----------------------~P~~~~v~W~k~~~~~~~~~~~~~~ 71 (239)
T 1i1c_A 15 VSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQ-----------------------NDPEVRFSWFIDDVEVHTAQTHAPE 71 (239)
T ss_dssp --CEEEECCCHHHHTTSSSCCEEEEEEEEECT-----------------------TCCCCEEEEEESSCEECCCEECCCE
T ss_pred CCEEEEECCChHHhcccCCcEEEEEEEecCcc-----------------------CCCCCEEEEEECCccccCcccccce
Confidence 3443 34444433 779999999999974310 0233 69999987554321110 11
Q ss_pred eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcc-eeeEE----EEEcCCcccccccCCceeecCCCcEEE
Q psy7941 84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK-QMAFL----EVVIPPDISSEETSGDMMVPEGGSAKL 158 (238)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l----~v~~~~~~~~~~~~~~~~~~~g~~~~l 158 (238)
...++++... .+|.|.+++.+|+|.|+|.+.+..... ....+ .+..+|.+....... ....|+.+.|
T Consensus 72 ~~~~~~~~~~------s~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~--~~~~g~~~~L 143 (239)
T 1i1c_A 72 KQSNSTLRSV------SELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPK--EEMTQSQVSI 143 (239)
T ss_dssp ECTTSCEEEE------EEEECCHHHHHTTCCEEEEEECSSSSSCEEEEECCCSSCCBCCEEEEECCCG--GGGGSSEEEE
T ss_pred EcCCCcEEEE------EEEEEEhhHccCCCeEEEEEecccCCCCcEEEEecCCCCCcCCEEEEECCCh--HHhcCCcEEE
Confidence 1123344332 289999999999999999998764422 22222 222344433222111 1234778999
Q ss_pred EEEEcc-ccCC-eEEEEeCCCeeeEeecCCC---CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 159 VCKAKG-YPTP-KITWRREDNKEIIVRSNPP---SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 159 ~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
.|.+.| +|.+ .+.|++ ++..+....... ..... ......|.+.....+|.|.|+|.|.|...
T Consensus 144 ~C~~~g~~P~~~~v~W~k-~g~~l~~~~~~~~~~~~dgt-~~~~s~l~v~~~~~~~~g~YtC~v~n~~l 210 (239)
T 1i1c_A 144 TCMVKGFYPPDIYTEWKM-NGQPQENYKNTPPTMDTDGS-YFLYSKLNVKKETWQQGNTFTCSVLHEGL 210 (239)
T ss_dssp EEEEEEEBSSCCEEEEEE-TTEECSSEEECCCEECTTSC-EEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred EEEEeeeECCCeEEEEEE-CCEECCCceecCceECCCCC-EEEEEEEEEChhhcCCCCEEEEEEECCCC
Confidence 999988 5653 899999 555442111000 00000 11112344444444578999999999875
No 231
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.74 E-value=5.5e-18 Score=129.94 Aligned_cols=183 Identities=13% Similarity=0.163 Sum_probs=106.8
Q ss_pred cccceeccCceeEEEec--CCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-eeE
Q psy7941 7 FEPDFLYPLENVTIAQG--RDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-EHV 83 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g--~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~ 83 (238)
.+|.+...+.......| +++.|.|.+.+..+ +.+.++|+|++..+..... ...
T Consensus 6 ~~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P------------------------~~~~v~W~k~g~~l~~~~~~~~~ 61 (323)
T 2wqr_A 6 TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTP------------------------GTIQITWLEDGQVMDVDLSTAST 61 (323)
T ss_dssp CCCCCEEEEECCCTTSCCCSEEEEEEEEEEECC------------------------CCEEEEEEETTEECCGGGEEEEE
T ss_pred CCCEEEEeCCChHHhccCCCcEEEEEEEeCeEC------------------------CCeEEEEEECCEEcccceecCCc
Confidence 45655433332222234 69999999974211 1357999998765432111 011
Q ss_pred eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEE--E---cCCcccccccCCceeecCCCcEEE
Q psy7941 84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV--V---IPPDISSEETSGDMMVPEGGSAKL 158 (238)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v--~---~~~~~~~~~~~~~~~~~~g~~~~l 158 (238)
...++++.... .|.|.+...+|+|.|+|.+.+.... ....+.+ . ..+.+.. ..+....+.+|+.+.|
T Consensus 62 ~~~~g~~~~~s------~l~i~~~~~~d~g~Y~C~a~n~~~~-~~~~~~~~~~~~~~~p~v~~-~~p~~~~v~~G~~v~L 133 (323)
T 2wqr_A 62 TQEGELASTQS------ELTLSQKHWLSDRTYTCQVTYQGHT-FEDSTKKCADSNPRGVSAYL-SRPSPFDLFIRKSPTI 133 (323)
T ss_dssp EEETTEEEEEE------EEEEEHHHHHTTCCEEEEEEETTEE-EEEEECCCCCSSGGGCEEEE-CCCCHHHHHTSSCCEE
T ss_pred CccCCcEEEEE------EEEEcHHHcCCCCcEEEEEEeCCCC-cceeeecCCCCCCCCCEEEE-cCCCHHHhccCCeEEE
Confidence 11134444433 7888888888999999999875432 1111211 0 0111111 1122334678999999
Q ss_pred EEEEccc-cCC---eEEEEeCCCeeeEeecCCC--CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 159 VCKAKGY-PTP---KITWRREDNKEIIVRSNPP--SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 159 ~C~~~~~-p~~---~~~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
.|.+.|. |.+ .+.|+++++..+....... ...... ...+.|.|.++..+|.|.|+|.|.|..+
T Consensus 134 ~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~-~~~~~L~I~~~~~~D~G~Y~C~a~n~~~ 202 (323)
T 2wqr_A 134 TCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTL-TVTSTLPVGTRDWIEGETYQCRVTHPHL 202 (323)
T ss_dssp EEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCE-EEEEEEECCHHHHHTTCCEEEEEECTTS
T ss_pred EEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCE-EEEEEEEECHHHccCCCCEEEEEECCCC
Confidence 9999885 566 8999996554432111000 000011 1344799999999999999999999874
No 232
>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*
Probab=99.73 E-value=8.2e-17 Score=119.44 Aligned_cols=178 Identities=18% Similarity=0.280 Sum_probs=103.8
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeeee------eEe
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIHE------HVI 84 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~------~~~ 84 (238)
+..+.+.+|++++|.|.+..... ....+.|++.... ....... ...
T Consensus 30 ~~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~ 85 (256)
T 3sob_H 30 SGGGLVQPGGSLRLSCAASGFTF------------------------TNSYIHWVRQAPGKGLEWVGWITPYGGYTNYAD 85 (256)
T ss_dssp ECCCEECTTCCEEEEEEEESSCG------------------------GGSCEEEEEECTTCCCEEEEEEETTTTEEEECT
T ss_pred cCcEEEcCCCCEEEEEEeecccc------------------------CCCEEEEEEECCCCCcEEEEEEecCCCceecCC
Confidence 34677999999999999964211 1245999985321 1111110 001
Q ss_pred ecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCC------------CcceeeEEEEEc----CCcccccccCCc
Q psy7941 85 TNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNP------------MTKQMAFLEVVI----PPDISSEETSGD 147 (238)
Q Consensus 85 ~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~------------~~~~~~~l~v~~----~~~~~~~~~~~~ 147 (238)
...+|+.+.... .+.++|.|.+++.+|+|.|+|.+.+.. .....+.+.|.. +|.+... ...
T Consensus 86 ~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~--~~~ 163 (256)
T 3sob_H 86 SVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPL--APS 163 (256)
T ss_dssp TTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEE--CCC
T ss_pred CCCCcEEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEE--CCC
Confidence 124688776543 367889999999999999999997543 112234566652 2222211 112
Q ss_pred eeecCCCcEEEEEEEcc-cc-CCeEEEEeCCCeeeE-eecC--CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 148 MMVPEGGSAKLVCKAKG-YP-TPKITWRREDNKEII-VRSN--PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 148 ~~~~~g~~~~l~C~~~~-~p-~~~~~W~~~~~~~~~-~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
..+..|+.+.|.|.+.+ +| ...+.| . +..... .... ....... ....+.|.|.....+| |.|+|.+.|..+
T Consensus 164 ~~~~~g~~v~L~C~~~~~~p~~~~v~W-~-~~~~~~~~~~~~~~~~~~g~-~~~~s~L~i~~~~~~d-~~ytC~v~~~~~ 239 (256)
T 3sob_H 164 SKSTSGGTAALGCLVKDYFPEPVTVSW-N-SGALTSGVHTFPAVLQSSGL-YSLSSVVTVPSSSLGT-QTYICNVNHKPS 239 (256)
T ss_dssp -----TTEEEEEEEEEEEBSSCCEEEE-G-GGTBCTTEEECCCEECTTSC-EEEEEEEEEEGGGTTT-CCCEEEEEEGGG
T ss_pred cccccCCcEEEEEEEEEEECCCeEEEE-C-CcccCCCeEeCCceeCCCCC-EEEEEEEEECHHHcCC-ceEEEEEEeCCC
Confidence 23567899999999987 55 347999 3 322110 0000 0000111 1223368888888888 999999999886
No 233
>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B
Probab=99.73 E-value=3.9e-17 Score=121.56 Aligned_cols=179 Identities=18% Similarity=0.266 Sum_probs=102.4
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce-e---eeeeee-----eEee
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK-A---VLAIHE-----HVIT 85 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-~---~~~~~~-----~~~~ 85 (238)
+..+.+.+|++++|.|.+..... ....+.||+.... . +..... ....
T Consensus 7 ~~~v~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~ 62 (263)
T 3iu4_H 7 SGPGLVAPSQSLSITCTVSGFSL------------------------SRYSVHWVRQPPGKGLEWLGMIWGGGSTDYNSA 62 (263)
T ss_dssp ECCSEECTTSCEEEEEEEESSCG------------------------GGSCEEEEEECTTSCCEEEEEECTTSCEEECGG
T ss_pred CCCEEEcCCCCEEEEEEeccccC------------------------CceEEEEEEECCCCCcEEEEEEeCCCcEeeCcc
Confidence 34578999999999999964211 1245999985321 1 111100 0011
Q ss_pred cCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCC---------CcceeeEEEEEc----CCcccccccCCceeec
Q psy7941 86 NNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNP---------MTKQMAFLEVVI----PPDISSEETSGDMMVP 151 (238)
Q Consensus 86 ~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~---------~~~~~~~l~v~~----~~~~~~~~~~~~~~~~ 151 (238)
..+||.+.... ...++|.|.+++.+|+|.|+|.+.+.. .....+.+.|.. +|.+... .....+.
T Consensus 63 ~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~--~~~~~~~ 140 (263)
T 3iu4_H 63 LKSRLSISKDNSKSQVFLKMNSLQTDDTAMYYCARSGVREGRAQAWFAYWGQGTLVTVSAASTKGPSVFPL--APSSKGS 140 (263)
T ss_dssp GTTCEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEECC---CEEEEEEECCCEEEEECSSCCBCCEEEEE--CCCCCC-
T ss_pred cCCCEEEEecCCCCEEEEEECCCCHHHCEEEEEEEEeCCCCccccccceeCCceEEEEecccCCCCEEEEc--cCccccc
Confidence 24688876543 367889999999999999999997542 112234566642 2222211 1112345
Q ss_pred CCCcEEEEEEEcc-ccC-CeEEEEeCCCeeeEeecC--CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 152 EGGSAKLVCKAKG-YPT-PKITWRREDNKEIIVRSN--PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 152 ~g~~~~l~C~~~~-~p~-~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
.|+.+.|.|.+.+ +|. +.++| .+.......... ....... ....+.|.|.....+| |.|+|.+.|..+
T Consensus 141 ~g~~~~L~C~~~~~~P~~~~v~W-~~~~~~~~~~~~~~~~~~~g~-~~~~s~L~i~~~~~~~-~~ytC~v~h~~~ 212 (263)
T 3iu4_H 141 TSGTAALGCLVKDYFPEPVTVSW-NSGALTSGVHTFPAVLQSSGL-YSLSSVVTVPSSSLGT-QTYICNVNHKPS 212 (263)
T ss_dssp ---EEEEEEEEEEEBSSCCEEEE-GGGTBCTTEEECCCEECTTSC-EEEEEEEEEETTHHHH-CCCEEEEEEGGG
T ss_pred cCCcEEEEEEEEeEeCCceEEEE-CCcccCCceeecCceECCCCC-EEEEEEEEECHhHcCC-CEEEEEEEECCC
Confidence 7899999999988 553 58999 422211100000 0000111 1122367888777778 999999999876
No 234
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=127.31 Aligned_cols=179 Identities=17% Similarity=0.259 Sum_probs=112.8
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
.+|.|..+. .+.+.+|+++.|.|.+.+. .|.+.+.|++++..+. .
T Consensus 6 ~~P~~~~~~-~~~v~~G~~v~l~C~~~~~-------------------------~p~~~v~W~~~~~~~~---------~ 50 (317)
T 2y25_A 6 TGPHFVEYL-SWEVTGECNVLLKCKVANI-------------------------KKETHIVWYKDEREIS---------V 50 (317)
T ss_dssp SCCEEEEEE-EEEEETTTEEEEEEEEESC-------------------------CTTCEEEEEETTEEEC---------C
T ss_pred CCCcEeeee-eEEECCCCeEEEEEEEcCC-------------------------CCCCEEEEEECCeEcC---------C
Confidence 467777544 5899999999999998642 2456799999876532 1
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEc--CCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVI--PPDISSEETSGDMMVPEGGSAKLVCKAKG 164 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~--~~~~~~~~~~~~~~~~~g~~~~l~C~~~~ 164 (238)
..++... .+..+|.|.+++.+|+|.|+|.+.+.... ....+.+.+ .+.+.. ......+..|+.+.|.|.+.+
T Consensus 51 ~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~-~~~~~~l~v~~~~~~~~--~~~~~~~~~g~~~~l~c~~~~ 124 (317)
T 2y25_A 51 DEKHDFK---DGICTLLITEFSKKDAGIYEVILKDDRGK-DKSRLKLVDEAFKELMM--EVCKKIALSATDLKIQSTAEG 124 (317)
T ss_dssp SCC--------CCEEEEETTCCSTTCSCEEEEEESSSCE-EEEEECCSTHHHHHHHH--HHHHHHHTCBCCCEEEECSSE
T ss_pred CCcEEEE---CCeEEEEEccCCcccCeEEEEEEECCCCc-EEEEEEEEEecCccccc--cCCceecccCCCeEEEeeccc
Confidence 2233222 22359999999999999999999775432 222333322 221111 112233455666677666655
Q ss_pred ----------ccCCeEEEEeCCCeeeEeecCCCCCcceEEE--eeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEE
Q psy7941 165 ----------YPTPKITWRREDNKEIIVRSNPPSSQKVFSV--ESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH 232 (238)
Q Consensus 165 ----------~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~ 232 (238)
.|.+.+.|+++ +..+.... ...... ....|.|.++..+|.|.|+|.|.|..|.. ..++.+.
T Consensus 125 ~~l~c~~~~~~p~~~i~W~~~-~~~~~~~~-----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~ 197 (317)
T 2y25_A 125 IQLYSFVTYYVEDLKVNWSHN-GSAIRYSD-----RVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGH-QKTVDLS 197 (317)
T ss_dssp EEEEEEBSSCCSSCEEEEEES-SSBCCCCS-----SEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEE-EEEEEEC
T ss_pred cEEEEEeccCCCCcEEEEEEC-CEECCCCC-----CeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceE-EEEEEEe
Confidence 68889999994 44332211 111111 12359999999999999999999988833 5555554
Q ss_pred E
Q psy7941 233 V 233 (238)
Q Consensus 233 V 233 (238)
|
T Consensus 198 v 198 (317)
T 2y25_A 198 G 198 (317)
T ss_dssp H
T ss_pred e
Confidence 3
No 235
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.73 E-value=9e-16 Score=124.76 Aligned_cols=186 Identities=19% Similarity=0.283 Sum_probs=108.8
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--cee--eeeeee-----eEe
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKA--VLAIHE-----HVI 84 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~--~~~~~~-----~~~ 84 (238)
.+..+.+.+|+++.|.|.+..... ....+.+.||++. ... +..... ...
T Consensus 6 qp~~v~v~~G~~v~L~C~~~~~~~----------------------~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~ 63 (512)
T 1zvo_C 6 ESGPGLVKPSETLSLTCIVSGGPI----------------------RRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNP 63 (512)
T ss_pred CCCCEEEcCCCCEEEEEEEccccc----------------------CCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECC
Confidence 356788999999999999964210 0001459999863 111 111110 001
Q ss_pred ecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCC--------------cceeeEEEEEc----CCcccccccC
Q psy7941 85 TNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPM--------------TKQMAFLEVVI----PPDISSEETS 145 (238)
Q Consensus 85 ~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--------------~~~~~~l~v~~----~~~~~~~~~~ 145 (238)
...+||.+.... ...++|.|.+++.+|+|.|+|.+.+... ....+.|.|.. +|.+.. ..+
T Consensus 64 ~~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~-~~~ 142 (512)
T 1zvo_C 64 SLRGRVTISVDTSRNQFSLNLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFP-IIS 142 (512)
T ss_pred ccCCceEEEecCCCCEEEEEECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEe-ccC
Confidence 124678776543 3568999999999999999999976421 12345677763 222221 111
Q ss_pred CceeecCCCcEEEEEEEccc-cCC-eEEEEeCCCeeeEeecC-CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 146 GDMMVPEGGSAKLVCKAKGY-PTP-KITWRREDNKEIIVRSN-PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
.......++.+.|.|.+.|. |.| .+.|++++......... ....... ....+.|.|.....+ .|.|+|.|.|..+
T Consensus 143 ~~~~~~~~~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~-~~~~s~L~i~~~~~~-~g~ytC~v~n~~~ 220 (512)
T 1zvo_C 143 GCRHPKDNSPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSY-YMTSSQLSTPLQQWR-QGEYKCVVQHTAS 220 (512)
T ss_pred CcccccCCCeEEEEEEEEeeecCceEEEEEcCcccCceEecCceecCCCC-EEEEEEEEEcHHHcC-CceEEEEEEeCCC
Confidence 11101235889999999885 766 89999843221110000 0000011 112235777776666 8999999999987
Q ss_pred CC
Q psy7941 223 PT 224 (238)
Q Consensus 223 ~~ 224 (238)
..
T Consensus 221 ~~ 222 (512)
T 1zvo_C 221 KS 222 (512)
T ss_pred Cc
Confidence 43
No 236
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=99.71 E-value=3e-16 Score=126.45 Aligned_cols=169 Identities=15% Similarity=0.194 Sum_probs=100.7
Q ss_pred EecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCC-c-eEEEEeCCceeeeeeeeeEe-ecCccEEEEEcCC
Q psy7941 21 AQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA-M-KVAWIKADTKAVLAIHEHVI-TNNARLSVTHNDA 97 (238)
Q Consensus 21 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 97 (238)
.+|+.+.|.|.+.+. .|. + .+.|++++............ ..++.+....
T Consensus 139 ~~g~~v~L~C~~~g~-------------------------~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s--- 190 (475)
T 1iga_A 139 QPDGNVVIACLVQGF-------------------------FPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSS--- 190 (475)
T ss_pred CCCCeEEEEEEEeee-------------------------cCCCceEEEEcCCCcccceEeCCceecCCCCcEEEEE---
Confidence 589999999998642 123 3 79999976432111111111 1233444432
Q ss_pred CeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEc--------------------CCcccccccCCceeecCCCcEE
Q psy7941 98 NTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVI--------------------PPDISSEETSGDMMVPEGGSAK 157 (238)
Q Consensus 98 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~--------------------~~~~~~~~~~~~~~~~~g~~~~ 157 (238)
.|.|.++..+|+|.|+|.+.+.........+.+.+ +|.+... .+....+.+|+.+.
T Consensus 191 ---~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~-~p~~~~~~~G~~v~ 266 (475)
T 1iga_A 191 ---QLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLH-RPALEDLLLGSEAN 266 (475)
T ss_pred ---EEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCCCCCCCcEEEEc-CCChHHhccCCceE
Confidence 78899998899999999998765433233333111 2222111 11222257899999
Q ss_pred EEEEEccccC---CeEEEEeCCCeeeEeecCC-CCC-cceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 158 LVCKAKGYPT---PKITWRREDNKEIIVRSNP-PSS-QKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 158 l~C~~~~~p~---~~~~W~~~~~~~~~~~~~~-~~~-~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
|.|.+.|.++ +.+.| . ++......... ... ... ....+.|.|..+..+|.|.|+|.|.|..|..
T Consensus 267 L~C~~~g~~p~~~~~i~W-~-~~~~~~~~~~~~~~~~~g~-~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~ 335 (475)
T 1iga_A 267 LTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGC-YSVSSVLPGCAEPWNHGKTFTCTAAYPESKT 335 (475)
T ss_pred EEEEEEcccCCCceEEEE-C-CCCcCCccccCceECCCCC-EEEEEEEEEchHHhccCCcEEEEEEcCCCCC
Confidence 9999988644 59999 4 43322111000 000 001 1234479999999999999999999998843
No 237
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.70 E-value=9.5e-16 Score=111.63 Aligned_cols=177 Identities=14% Similarity=0.182 Sum_probs=105.6
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee-eeeee--eeEee
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA-VLAIH--EHVIT 85 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~-~~~~~--~~~~~ 85 (238)
+...+..+.+.+|+++.|.|.+.+... ..+.+.||++.. .. ..... .....
T Consensus 4 v~q~p~~v~v~~G~~vtL~C~~s~~~~------------------------~~~~v~W~rq~~g~~~~~l~~~~~~~~~~ 59 (229)
T 1hxm_A 4 LVPEHQTVPVSIGVPATLRCSMKGEAI------------------------GNYYINWYRKTQGNTMTFIYREKDIYGPG 59 (229)
T ss_dssp EEESCSEEEEETTCCEEEEEEECSSCG------------------------GGSEEEEEEEESSSCSEEEEETTTEECTT
T ss_pred cEeCCCEEEEcCCCCEEEEeEecCCcc------------------------CcceEEEEEECCCCCcEEEEEcCCccCCC
Confidence 456788899999999999999863210 024599998632 11 11110 01111
Q ss_pred cCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCC------C---cceeeEEEEEcCCcccccccCCceeecCCCc
Q psy7941 86 NNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNP------M---TKQMAFLEVVIPPDISSEETSGDMMVPEGGS 155 (238)
Q Consensus 86 ~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~------~---~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~ 155 (238)
..+||.+... ....++|.|.+++.+|+|.|+|.+.+.. . ....+.|.|........ ...+.+.. ..
T Consensus 60 ~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~---~P~v~~~~-~~ 135 (229)
T 1hxm_A 60 FKDNFQGDIDIAKNLAVLKILAPSERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHT---KPSVFVMK-NG 135 (229)
T ss_dssp TTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCB---CCEEEEEE-ET
T ss_pred cCCeEEEEEcCCCCEEEEEECcCCHhHCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCc---CCcEEEcC-CC
Confidence 2578887754 4467899999999999999999997642 1 11234677764211111 11122211 23
Q ss_pred EEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEee-cCCCeEEEEEeeeCCC
Q psy7941 156 AKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT-RSEMGAYQCIAANGVP 222 (238)
Q Consensus 156 ~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~n~~g 222 (238)
+.|.|.+.+ +|.+ .+.|.++ ..+.... .......++.+.+.... ..+.|.|+|.+.|..+
T Consensus 136 ~~L~C~~~g~~P~~i~v~W~~~--~~~~~~~-----~~~~~~~dg~y~~~~~~~~~~~~~ytC~V~h~~~ 198 (229)
T 1hxm_A 136 TNVACLVKEFYPKDIRINLVSS--KKITEFD-----PAIVISPSGKYNAVKLGKYEDSNSVTCSVQHDNK 198 (229)
T ss_dssp TEEEEEEESCBSSCCEEEEECS--SEEEECC-----CEEEECTTSSEEEEEEEEETTTTTCEEEEEETTE
T ss_pred CeEEEEEEEEeCCCEEEEEecC--CEEecCc-----cceEECCCCcEEEEECcccCCCCcEEEEEEeCCC
Confidence 589999987 5665 8999995 4443211 11111222344443333 3678899999999875
No 238
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.70 E-value=9.7e-17 Score=124.08 Aligned_cols=180 Identities=16% Similarity=0.259 Sum_probs=100.0
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCC-ceEEEEeCCceeeeeeeeeEeec
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA-MKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
+|.+...+....+.+|+++.|.|.+.+. .|. +.+.|++++..+...........
T Consensus 120 ~P~i~~~~~~~~~~~g~~v~L~C~~~g~-------------------------~P~~~~v~W~k~g~~~~~~~~~~~~~~ 174 (344)
T 1za6_B 120 GPSVFPLAPSSKSTSGGTAALGCLVKDY-------------------------FPEPVTVSWNSGALTSGVHTFPAVLQS 174 (344)
T ss_dssp CCEEEEECCSCTTTSSSEEEEEEEEEEE-------------------------BSSCCCEEETTTTBCTTEEECCCEECT
T ss_pred CCeEEEccccccccCCCcEEEEEEEeeE-------------------------ECCCeEEEEecCCccCceeECCCeECC
Confidence 3444333323345689999999998642 122 57999998765322111111223
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcc-eeeEEE------------------------EEcCCcccc
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK-QMAFLE------------------------VVIPPDISS 141 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~------------------------v~~~~~~~~ 141 (238)
++++.... .|.|.+++.+| |.|+|.+.+..... ....+. +..+|.+..
T Consensus 175 ~~~~~~~s------~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P~v~~ 247 (344)
T 1za6_B 175 SGLYSLSS------VVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQVYT 247 (344)
T ss_dssp TSCEEEEE------EEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------CCBCCEEEE
T ss_pred CCCEEEEE------EEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCCCcCCEEEE
Confidence 44555443 89999998888 99999998754321 111121 112333322
Q ss_pred cccCCceeecCCCcEEEEEEEccc-c-CCeEEEEeCCCeeeEeecCCCC--CcceEEEeeceEEEEEeecCCCeEEEEEe
Q psy7941 142 EETSGDMMVPEGGSAKLVCKAKGY-P-TPKITWRREDNKEIIVRSNPPS--SQKVFSVESEVLSLTKVTRSEMGAYQCIA 217 (238)
Q Consensus 142 ~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~~~W~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 217 (238)
.... .. ...|..+.|.|.+.|. | .+.+.|+++ +..+........ ...-.......|.+.....+|.|.|+|.|
T Consensus 248 ~~~~-~~-~~~~~~~~L~C~~~g~~P~~~~v~W~k~-g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a 324 (344)
T 1za6_B 248 LPPS-RD-ELTKNQVSLTCLVKGFYPSDIAVEWESN-GQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSV 324 (344)
T ss_dssp ECCC-GG-GGGSSSEEEEEEEEEEBSSCCEEEEESS-SSCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEEEEEE
T ss_pred eCCC-hH-hccCCcEEEEEEEeeEECCCeEEEEEEC-CeECCCcEecceEECCCCcEEEEEEEEEChHHccCCCeEEEEE
Confidence 2111 11 2235669999999984 4 358999994 443321110000 00000111224555555567799999999
Q ss_pred eeCCC
Q psy7941 218 ANGVP 222 (238)
Q Consensus 218 ~n~~g 222 (238)
.|...
T Consensus 325 ~~~~l 329 (344)
T 1za6_B 325 MHEAL 329 (344)
T ss_dssp ECTTS
T ss_pred EcCCC
Confidence 99775
No 239
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=99.69 E-value=8.7e-17 Score=128.97 Aligned_cols=176 Identities=15% Similarity=0.228 Sum_probs=99.1
Q ss_pred cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCC-ceEEEEeCCceeeeeeeeeEeecC
Q psy7941 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA-MKVAWIKADTKAVLAIHEHVITNN 87 (238)
Q Consensus 9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~~~ 87 (238)
|.+...+....+.+|+++.|.|.+.+. .|. +.+.|++++..............+
T Consensus 133 P~i~~~~~~~~~~~g~~v~L~C~~~g~-------------------------~P~~~~v~W~k~~~~~~~~~~~~~~~~~ 187 (457)
T 1hzh_H 133 PSVFPLAPSSKSTSGGTAALGCLVKDY-------------------------FPEPVTVSWNSGALTSGVHTFPAVLQSS 187 (457)
T ss_dssp CEEEEECCCSCCCTTCCEEEEEEEESB-------------------------BSCCCEEEETTTTBCTTEEEEEEEECTT
T ss_pred CeEEecCccccccCCCcEEEEEEEeEE-------------------------eCCCeEEEEEeCCEeccceEcCceECCC
Confidence 443333333345789999999999742 122 579999987543222222222334
Q ss_pred ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcc-eeeEEEEEc-----------------CCcccccccCCce-
Q psy7941 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK-QMAFLEVVI-----------------PPDISSEETSGDM- 148 (238)
Q Consensus 88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v~~-----------------~~~~~~~~~~~~~- 148 (238)
+++.... .|.|.++..+| |.|+|.+.+..... ....+.+.. +|.+... .+...
T Consensus 188 ~~~~~~s------~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~-~p~~~~ 259 (457)
T 1hzh_H 188 GLYSLSS------VVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLF-PPKPKD 259 (457)
T ss_dssp SCEEEEE------EEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEE-CCCHHH
T ss_pred CCEEEEE------EEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccCCCCCccccCCceEEeE-CcCchh
Confidence 4554433 89999999999 99999998753321 122222211 1222111 11111
Q ss_pred eecCCCcEEEEEEEccccCC----eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEE---eecCC---CeEEEEEee
Q psy7941 149 MVPEGGSAKLVCKAKGYPTP----KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTK---VTRSE---MGAYQCIAA 218 (238)
Q Consensus 149 ~~~~g~~~~l~C~~~~~p~~----~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~---~~~~d---~G~y~C~~~ 218 (238)
.+..|+.+.|.|.+.|.|++ .+.|++ ++..+..... .......++.+.+.. +...| .|.|+|.|.
T Consensus 260 ~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k-~~~~~~~~~~----~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~ 334 (457)
T 1hzh_H 260 TLMISRTPEVTCVVVDVSHEDPEVKFNWYV-DGVEVHNAKT----KPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVS 334 (457)
T ss_dssp HHCTTSCCCEEEEEECCCTTCCCCEEEEEE-TTEEECCCEE----EEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEE
T ss_pred hcccCCceEEEEEEEcccCCCCceEEEEEe-CCcccccccc----ccceecCCCcEEEEEEEEECHHHccCCCcEEEEEe
Confidence 15679999999999997543 999999 4443321100 000111222333332 22444 999999999
Q ss_pred eCCC
Q psy7941 219 NGVP 222 (238)
Q Consensus 219 n~~g 222 (238)
|..+
T Consensus 335 n~~~ 338 (457)
T 1hzh_H 335 NKAL 338 (457)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 8765
No 240
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=99.69 E-value=1.6e-16 Score=101.68 Aligned_cols=96 Identities=26% Similarity=0.417 Sum_probs=72.2
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
+.+|.|...+..+.+.+|+++.|.|.+. +.|.+.+.|+|++..+.
T Consensus 11 ~~pP~f~~~p~~~~v~~G~~~~l~C~~~--------------------------G~P~p~v~W~k~g~~l~--------- 55 (107)
T 3knb_B 11 GSPPCFLRFPRPVRVVSGAEAELKCVVL--------------------------GEPPPVVVWEKGGQQLA--------- 55 (107)
T ss_dssp CEEEEEEECCCCEEEETTSCEEEEEEEE--------------------------EESCCEEEEEETTEECC---------
T ss_pred CCCCEEEeCCCcEEEeCCCcEEEEEEEE--------------------------EecCCEEEEEECccccc---------
Confidence 4579999999999999999999999995 34577899999876543
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCC
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPP 137 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~ 137 (238)
.+.++.+... ....+|.|.+++.+|+|.|+|.+.|.. .....+.|.|..+|
T Consensus 56 ~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~pP 107 (107)
T 3knb_B 56 ASERLSFPAD-GAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107 (107)
T ss_dssp CCSSEECCEE-TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC--
T ss_pred ceeeEEEeec-CceEEEEEecCChhhCEEEEEEEEECCCEEEEEEEEEEEcCC
Confidence 2344444332 234589999999999999999998863 34556677777654
No 241
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.67 E-value=1.1e-17 Score=133.34 Aligned_cols=170 Identities=10% Similarity=0.126 Sum_probs=101.9
Q ss_pred EEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCc-eEEEEeCCceeeeeeeeeEeecCccEEEEEcCC
Q psy7941 19 TIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM-KVAWIKADTKAVLAIHEHVITNNARLSVTHNDA 97 (238)
Q Consensus 19 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (238)
.+.+|+.+.|.|.+.+. .|.+ .+.|++++........... ...+++....
T Consensus 130 ~~~~G~~v~L~C~~~g~-------------------------~P~p~~v~W~k~~~~~~~~~~~~~-~~~~~~~~~s--- 180 (434)
T 1igy_B 130 AAQTNSMVTLGCLVKGY-------------------------FPEPVTVTWNSGSLSSGVHTFPAV-LQSDLYTLSS--- 180 (434)
T ss_dssp CCCCTTEEEEEEEEEEE-------------------------BSSCCEEEETTTTBCSSEEECCCE-ECSSCEEEEE---
T ss_pred ccCCCCcEEEEEEEeee-------------------------cCCCeEEEEeeCCcCCCeEecCce-ecCCcEEEEE---
Confidence 35789999999999642 1333 7999998764321111111 1123444332
Q ss_pred CeEEEEEcccCcccCeEEEEEEecCCCc-ceeeEEEEEc---------C---CcccccccCCcee-ecCCCcEEEEEEEc
Q psy7941 98 NTWTLNIRSVRREDRGYYMCQVNTNPMT-KQMAFLEVVI---------P---PDISSEETSGDMM-VPEGGSAKLVCKAK 163 (238)
Q Consensus 98 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l~v~~---------~---~~~~~~~~~~~~~-~~~g~~~~l~C~~~ 163 (238)
.|.|.+++.+| |.|+|.+.+.... .....+.+.. . |.+... .+.... +..|+.+.|.|.+.
T Consensus 181 ---~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~-~p~~~~~v~~G~~~~L~C~~~ 255 (434)
T 1igy_B 181 ---SVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIF-PPKPKDTLLITVTPKVTCVVV 255 (434)
T ss_dssp ---EEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEE-CCCHHHHHSTTSCCEEEEEEC
T ss_pred ---EEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEe-CCChHHhcccCCCcEEEEEEe
Confidence 79999999889 9999999876432 2222222210 0 222111 111111 77899999999999
Q ss_pred ccc----CCeEEEEeCCCeeeEeecCCCC--CcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941 164 GYP----TPKITWRREDNKEIIVRSNPPS--SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP 223 (238)
Q Consensus 164 ~~p----~~~~~W~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~ 223 (238)
|.+ .+.+.|++++.. +........ .........+.|.|..+..+|.|.|+|.|.|..|.
T Consensus 256 g~~p~P~~~~i~W~k~~~~-~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~ 320 (434)
T 1igy_B 256 DISKDDPEVQFSWFVDNVE-VHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFP 320 (434)
T ss_dssp CCCSSCCCCCBCBBSSSCC-BCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCS
T ss_pred ccccCCCCeEEEEEeCCcc-cCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCC
Confidence 873 348999995533 321110000 00000112346899999999999999999999884
No 242
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=99.67 E-value=1.5e-16 Score=101.79 Aligned_cols=88 Identities=20% Similarity=0.301 Sum_probs=66.3
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
+..+.+.+|+.+.|.|.+.|.|.|.+.|++ ++..+..... ...........|.|.++..+|+|.|+|.|.|..|..
T Consensus 20 p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k-~g~~l~~~~~---~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 95 (107)
T 3knb_B 20 PRPVRVVSGAEAELKCVVLGEPPPVVVWEK-GGQQLAASER---LSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEA 95 (107)
T ss_dssp CCCEEEETTSCEEEEEEEEEESCCEEEEEE-TTEECCCCSS---EECCEETTEEEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred CCcEEEeCCCcEEEEEEEEEecCCEEEEEE-Ccccccceee---EEEeecCceEEEEEecCChhhCEEEEEEEEECCCEE
Confidence 455778899999999999999999999999 5555532211 001111123379999999999999999999999954
Q ss_pred ccceEEEEEEeec
Q psy7941 225 VSKRLMLHVHCTY 237 (238)
Q Consensus 225 ~~~~~~l~V~~~p 237 (238)
+.++.|.|..+|
T Consensus 96 -~~~~~l~V~~pP 107 (107)
T 3knb_B 96 -YAAAAVTVLEPP 107 (107)
T ss_dssp -EEEEEEEEEC--
T ss_pred -EEEEEEEEEcCC
Confidence 788999999887
No 243
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.67 E-value=1.2e-15 Score=119.31 Aligned_cols=180 Identities=13% Similarity=0.202 Sum_probs=103.8
Q ss_pred eccCceeE-EEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-eeEeecCcc
Q psy7941 12 LYPLENVT-IAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-EHVITNNAR 89 (238)
Q Consensus 12 ~~~~~~~~-v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~ 89 (238)
+.++.... +..|+++.|.|.+.+....+ +...|.|+++++....... ......+++
T Consensus 171 ~~~p~~~~~~~~g~~v~L~C~~~g~~P~p----------------------~~~~v~W~k~~~~~~~~~~~~~~~~~~~~ 228 (376)
T 2aty_A 171 IFPPKPKDVLTITLTPKVTCVVVDISKDD----------------------PEVQFSWFVDDVEVHTAQTQPREEQFNST 228 (376)
T ss_pred EeCcCHHHceeeCCeeEEEEEEeccccCC----------------------CccEEEEEECCccccCcccCCCCcccCCc
Confidence 34444444 78999999999987431000 1236999998855321110 001112233
Q ss_pred EEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEE----EEEcCCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941 90 LSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFL----EVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG 164 (238)
Q Consensus 90 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l----~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~ 164 (238)
+.... .|.|.+++.+|.|.|+|.+.+... ......+ .+..+|.+...... .....|+.+.|.|.+.|
T Consensus 229 ~~~~s------~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~--~~~~~g~~~~L~C~~~g 300 (376)
T 2aty_A 229 FRSVS------ELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQLYTIPPP--KEQMAKDKVSLTCMITD 300 (376)
T ss_pred EEEEE------EEEechHhccCCCEEEEEEecCCCCCceEEEEcCCCCCCcCCeEEeeCCC--HHHhcCCceEEEEEEEE
Confidence 33322 799999999999999999977533 2222222 23345554432222 22345888999999998
Q ss_pred -cc-CCeEEEEeCCCeeeEeecCCCC--CcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 165 -YP-TPKITWRREDNKEIIVRSNPPS--SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 165 -~p-~~~~~W~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
+| ...|+|++ ++..+........ ...-.......|.+.....+|.|.|+|.|.|...
T Consensus 301 ~~P~~i~v~W~k-~g~~~~~~~~~~~~~~~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l 361 (376)
T 2aty_A 301 FFPEDITVEWQW-NGQPAENYKNTQPIMNTNESYFVYSKLNVQKSNWEAGNTFTCSVLHEGL 361 (376)
T ss_pred eECCCcEEEEEE-CCEECCCeEeCCceECCCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCC
Confidence 44 34899999 5544321111000 0000111223566666666788999999999875
No 244
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Probab=99.66 E-value=4.6e-16 Score=114.02 Aligned_cols=182 Identities=17% Similarity=0.265 Sum_probs=102.9
Q ss_pred ccceeccCceeE-EEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCC-CceEEEEeCCceeeeeeee-eEe
Q psy7941 8 EPDFLYPLENVT-IAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSS-AMKVAWIKADTKAVLAIHE-HVI 84 (238)
Q Consensus 8 ~p~~~~~~~~~~-v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~W~~~~~~~~~~~~~-~~~ 84 (238)
++.++.++.... +..|+++.|.|.+.+... .| ...+.|++++..+...... ...
T Consensus 23 P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p-----------------------~P~~i~v~W~k~g~~l~~~~~~~~~~ 79 (240)
T 4acp_A 23 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSH-----------------------EDPEVKFNWYVDGVEVHNAKTKPREE 79 (240)
T ss_dssp CEEEEECCCHHHHHSSSSCCEEEEEEESCCC-------------------------CCCEEEEEETTEEECCCEECCCEE
T ss_pred CEEEEECcChHHhcccCCCcEEEEEEecccc-----------------------CCCccEEEEEECCcccCCceeccceE
Confidence 334445555555 557999999999975320 01 3469999987665322111 111
Q ss_pred ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEE----EEcCCcccccccCCceeecCCCcEEEE
Q psy7941 85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLE----VVIPPDISSEETSGDMMVPEGGSAKLV 159 (238)
Q Consensus 85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~----v~~~~~~~~~~~~~~~~~~~g~~~~l~ 159 (238)
..+++|.... .|.|.....+|.|.|+|++.+... ......+. +..+|.+...... .....|+.+.|.
T Consensus 80 ~~~g~~~~~s------~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~--~~~~~g~~~~L~ 151 (240)
T 4acp_A 80 QYNSTYRVVS------VLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPS--RDELTKNQVSLT 151 (240)
T ss_dssp C---CEEEEE------EEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCC--GGGGGSSEEEEE
T ss_pred CCCCeEEEEE------EEEEechhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCC--hHHhcCCceEEE
Confidence 2244555543 788887778889999999987643 22222222 2234444332211 112238899999
Q ss_pred EEEcc-ccCC-eEEEEeCCCeeeEeecCCC---CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 160 CKAKG-YPTP-KITWRREDNKEIIVRSNPP---SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 160 C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
|.+.+ +|.+ .+.|++ ++..+....... ..... ....+.|.+......+.|.|+|.+.|..-
T Consensus 152 C~~~gf~P~~i~v~W~k-~g~~~~~~~~~~~~~~~dgt-~~~~s~L~v~~~~~~~~~~ytC~V~h~~l 217 (240)
T 4acp_A 152 CLVKGFYPSDIAVEWES-NGQPENNYKATPPVLDSDGS-FFLYSKLTVDKSRWQQGNVFSCSVMHEAL 217 (240)
T ss_dssp EEEEEEBSSCCEEEEEE-TTEECSSEEECCCEECTTSC-EEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred EEEeEEeCCCcEEEEEE-CCEECCCcCccCceECCCCC-EEEEEEEEEChHHhCCCCEEEEEEEECCC
Confidence 99998 6665 899999 444432111000 00111 11223466655555678999999999764
No 245
>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}
Probab=99.66 E-value=1.9e-15 Score=112.77 Aligned_cols=178 Identities=16% Similarity=0.256 Sum_probs=103.1
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eeeeee------eEe
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLAIHE------HVI 84 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~~~------~~~ 84 (238)
+..+.+.+|+++.|.|.+.... .....+.||+..... ...... ...
T Consensus 30 ~~~~~~~~G~~v~L~C~~s~~~------------------------~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~ 85 (267)
T 3u1s_H 30 SGAEVKKPGSSVKVSCKASGNS------------------------FSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQ 85 (267)
T ss_dssp CCCEEECTTCCEEEEEEEGGGG------------------------GGTSEEEEEEECTTSCCEEEEEECTTSSCEEECG
T ss_pred eCCEEEeCCCcEEEEEEeeCCc------------------------cCCCEEEEEEECCCCCcEEEEEEeCCCCceecCc
Confidence 3457899999999999986321 012459999853211 111100 011
Q ss_pred ecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEec-------CC-------------------CcceeeEEEEEc--
Q psy7941 85 TNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNT-------NP-------------------MTKQMAFLEVVI-- 135 (238)
Q Consensus 85 ~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~-------~~-------------------~~~~~~~l~v~~-- 135 (238)
...+|+.+.... ...++|.|.+++.+|+|.|+|.+.+ .. .....+.+.|..
T Consensus 86 ~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~ 165 (267)
T 3u1s_H 86 KFQGRVTITRDSGASTVYMELRGLTADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSAS 165 (267)
T ss_dssp GGTTTEEEEECGGGCCEEEEECSCCGGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCC
T ss_pred ccCCcEEEEEcCCCCEEEEEECCCChhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCC
Confidence 124688876544 3678999999999999999999851 11 011234466642
Q ss_pred --CCcccccccCCceeecCCCcEEEEEEEcc-cc-CCeEEEEeCCCeee---EeecCCCCCcceEEEeeceEEEEEeecC
Q psy7941 136 --PPDISSEETSGDMMVPEGGSAKLVCKAKG-YP-TPKITWRREDNKEI---IVRSNPPSSQKVFSVESEVLSLTKVTRS 208 (238)
Q Consensus 136 --~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p-~~~~~W~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 208 (238)
+|.+... ........|+.+.|.|.+.+ +| .+.+.| . +.... ............ ....+.|.+.....+
T Consensus 166 ~~~P~v~~~--~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W-~-~~~~~~~~~~~~~~~~~~g~-y~~~s~L~i~~~~~~ 240 (267)
T 3u1s_H 166 TKGPSVFPL--APSSKSTSGGTAALGCLVKDYFPEPVTVSW-N-SGALTSGVHTFPAVLQSSGL-YSLSSVVTVPSSSLG 240 (267)
T ss_dssp CBCCEEEEE--CCCGGGEETTEEEEEEEEEEEBSSCCEEEE-G-GGTBCTTEEECCCEECTTSC-EEEEEEEEEEGGGGG
T ss_pred CCCCEEEEe--cCCcccCCCCcEEEEEEEeEEECCCeEEEE-C-CcccCCCEEeCCceECCCCC-EEEEEEEEECchhcC
Confidence 2222211 11112346889999999987 56 458999 3 32211 100000000111 112235778777777
Q ss_pred CCeEEEEEeeeCCC
Q psy7941 209 EMGAYQCIAANGVP 222 (238)
Q Consensus 209 d~G~y~C~~~n~~g 222 (238)
| +.|+|.+.|..+
T Consensus 241 ~-~~ytC~v~h~~~ 253 (267)
T 3u1s_H 241 T-QTYICNVNHKPS 253 (267)
T ss_dssp T-CCCEEEEEEGGG
T ss_pred C-CEEEEEEEECCC
Confidence 8 999999999875
No 246
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.65 E-value=1.2e-14 Score=118.07 Aligned_cols=192 Identities=16% Similarity=0.190 Sum_probs=111.2
Q ss_pred ccce-eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee--eeEe
Q psy7941 8 EPDF-LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH--EHVI 84 (238)
Q Consensus 8 ~p~~-~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~--~~~~ 84 (238)
+|.+ +.++....+..|+++.|.|.+.+..+. ...+.|++++........ ....
T Consensus 296 ~p~v~~~~p~~~~~~~g~~~~L~C~v~g~~P~------------------------~~~i~W~k~g~~~~~~~~~~~~~~ 351 (512)
T 1zvo_C 296 PLGVYLLTPAVQDLWLRDKATFTCFVVGSDLK------------------------DAHLTWEVAGKVPTGGVEEGLLER 351 (512)
T ss_pred CCEEEEECCChHHhccCCceEEEEEEeceECC------------------------CeEEEEEECCEeccCceeccceec
Confidence 3444 344444556789999999999743111 237999998765331111 1111
Q ss_pred ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEE------EcCCcccccccCCceeecCCCcEE-
Q psy7941 85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV------VIPPDISSEETSGDMMVPEGGSAK- 157 (238)
Q Consensus 85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v------~~~~~~~~~~~~~~~~~~~g~~~~- 157 (238)
..+++|.... .|.|.....+|.|.|+|.+.+.........+.. ..+|.+...... . .|+.+.
T Consensus 352 ~~~gt~~~~s------~L~i~~~~~~d~g~y~C~a~n~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~--~---~~~~~~~ 420 (512)
T 1zvo_C 352 HSNGSQSQHS------RLTLPRSLWNAGTSVTCTLNHPSLPPQRLMALREPAAQAPVKLSLNLLASS--D---PPEAASW 420 (512)
T ss_pred CCCCeEEEEE------EEEEchHHhcCCCeEEEEEEeCCCCCCceeEEeecCCCCCCCCEEEEEccC--c---CCCCceE
Confidence 2234454443 799999999999999999987643221222222 123333222111 1 688889
Q ss_pred EEEEEcc-ccCC-eEEEEeCCCeeeEeecCCC-----CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC-CccceE
Q psy7941 158 LVCKAKG-YPTP-KITWRREDNKEIIVRSNPP-----SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP-TVSKRL 229 (238)
Q Consensus 158 l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~-~~~~~~ 229 (238)
|.|.+.| +|.. .+.|++ ++..+....... ............|.+.....+|.|.|+|.|.|.... ......
T Consensus 421 L~C~~~g~~P~~i~v~W~k-~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~~~~~~~ 499 (512)
T 1zvo_C 421 LLCEVSGFSPPNILLMWLE-DQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRTLLNASR 499 (512)
T ss_pred EEEEEeeeCCCCcEEEEEE-CCeECcCccccccceeECCCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCCCceEEEE
Confidence 9999998 4543 789999 555443211000 000000111224666666667799999999998753 445566
Q ss_pred EEEEEe
Q psy7941 230 MLHVHC 235 (238)
Q Consensus 230 ~l~V~~ 235 (238)
.|.|..
T Consensus 500 ~~~v~~ 505 (512)
T 1zvo_C 500 SLEVSY 505 (512)
T ss_pred EEEecc
Confidence 666654
No 247
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.64 E-value=1e-15 Score=96.71 Aligned_cols=95 Identities=17% Similarity=0.310 Sum_probs=70.8
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
+.+|.|...+..+.+.+|+++.|.|.+. +.|.|.++|++++..+...
T Consensus 3 ~~PP~i~~~p~~~~v~~G~~~~l~C~~~--------------------------g~P~p~v~W~k~g~~i~~~------- 49 (100)
T 3knb_A 3 GIPPKIEALPSDISIDEGKVLTVACAFT--------------------------GEPTPEVTWSCGGRKIHSQ------- 49 (100)
T ss_dssp CEEEEECCCCSEEEEETTSEEEEEEEEE--------------------------EESCCEEEEEETTEECCTT-------
T ss_pred CCCCEEEeCCCcEEEeCCCeEEEEEEEE--------------------------EecCCEEEEEECceEeeee-------
Confidence 4689999999999999999999999995 3457789999987654321
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEE
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVV 134 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~ 134 (238)
...++.+... ....+|.|.+++.+|+|.|+|.+.|... ....+.|.|.
T Consensus 50 ~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 98 (100)
T 3knb_A 50 EQGRFHIENT-DDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIR 98 (100)
T ss_dssp GGGTEEEEEC-SSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ccceeeeecc-cceEEEEEcCCCccCCEEEEEEEEECCCEEEEEEEEEEE
Confidence 1335555443 2345899999999999999999988643 3445556554
No 248
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*
Probab=99.64 E-value=8.3e-17 Score=116.22 Aligned_cols=177 Identities=14% Similarity=0.172 Sum_probs=99.1
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee-eEeecCcc
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE-HVITNNAR 89 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~ 89 (238)
++..|..+.+.+|+++.|.|.+.+.... ..+.+.| ++ ......... .....+++
T Consensus 7 ~~~~P~~~~v~~G~~v~L~C~~~g~~p~-----------------------~~~~v~W-~~-~~~~~~~~~~~~~~~~g~ 61 (214)
T 1ow0_A 7 SLHRPALEDLLLGSEANLTCTLTGLRDA-----------------------SGVTFTW-TP-SSGKSAVQGPPERDLCGC 61 (214)
T ss_dssp EEECCCHHHHHHCSSCCCEEEETTCCSC-----------------------CCCCCCB-SS-CSSCCCEECCCCCCSTTC
T ss_pred EEECcChHHhccCCCcEEEEEEeeeECC-----------------------CCeEEEE-cC-CCCCCcccCCceECCCCc
Confidence 3466777788999999999999642110 0146999 43 322111100 00011222
Q ss_pred EEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc-ceeeEEE---EEcCCcccccccCCceeecCCCcEEEEEEEcc-
Q psy7941 90 LSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT-KQMAFLE---VVIPPDISSEETSGDMMVPEGGSAKLVCKAKG- 164 (238)
Q Consensus 90 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l~---v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~- 164 (238)
+. ...+|.|.+++.+|+|.|+|.+.+.... ...+.+. +..+|.+.... +....+..|..+.|.|.+.|
T Consensus 62 ~~------~~~~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~i~~~~~~~~P~v~~~~-~~~~~~~~g~~~~L~C~~~g~ 134 (214)
T 1ow0_A 62 YS------VSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLP-PPSEELALNELVTLTCLARGF 134 (214)
T ss_dssp CC------EEEECTTTHHHHHHTCEEEEEECCSSCSSCEEEEEECCSSCCCCEEEEEC-CCTTTTTSSSEEEEEEEEEEE
T ss_pred EE------EEEEEEEeHHHcCCCCeEEEEEecCCCCCceeEeeccCCCCCCCEEEecC-CCHHHhccCCceEEEEEEeee
Confidence 22 2238899999999999999999775432 2223332 12344443221 11123567888999999998
Q ss_pred ccC-CeEEEEeCCCeeeEeecCCCCCcceEEE---eec------eEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 165 YPT-PKITWRREDNKEIIVRSNPPSSQKVFSV---ESE------VLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 165 ~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~---~~~------~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
+|. +.+.|++ ++..+....... ...... .++ .|.+.....++.|.|+|.|.|...
T Consensus 135 ~P~~~~v~W~k-~g~~l~~~~~~~--~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l 199 (214)
T 1ow0_A 135 SPKDVLVRWLQ-GSQELPREKYLT--WASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEAL 199 (214)
T ss_dssp SSSCCEEEEEE-TTEECCGGGSEE--CCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTC
T ss_pred ECCCcEEEEEE-CCEECCCCceee--cCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCC
Confidence 564 4999999 555443211000 000111 122 233333333457899999999875
No 249
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}
Probab=99.64 E-value=8.4e-15 Score=113.31 Aligned_cols=133 Identities=20% Similarity=0.294 Sum_probs=78.4
Q ss_pred CeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCC-cEEEEEEEcc-ccC--CeEEE
Q psy7941 98 NTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGG-SAKLVCKAKG-YPT--PKITW 172 (238)
Q Consensus 98 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~-~~~l~C~~~~-~p~--~~~~W 172 (238)
++.+|.|.+++.+|.|.|+|.+.+... ....+.|.|..+|.+...... ...+..|+ .+.|.|.+.+ +|. +.++|
T Consensus 252 g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~pP~V~v~p~~-~~~~~~G~~~vtL~C~a~GfyP~~~~~VtW 330 (401)
T 3f8u_B 252 GNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPAT-LARAAPGEAPPELLCLVSHFYPSGGLEVEW 330 (401)
T ss_dssp EEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEESSS-CCCCCTTCCCCCEEEEEEEEBSSTTCEEEE
T ss_pred CcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeeccCCeEeeccCc-ceeecCCCccEEEEEEecCCcCCCCcEEEE
Confidence 567999999999999999999976532 334556788887776543221 11134565 7999999988 676 69999
Q ss_pred E-eCC--CeeeEee-----cC-CCCCcceEEEeeceEEEEEeecCCCe-EEEEEeeeCCCCCccceEEEE
Q psy7941 173 R-RED--NKEIIVR-----SN-PPSSQKVFSVESEVLSLTKVTRSEMG-AYQCIAANGVPPTVSKRLMLH 232 (238)
Q Consensus 173 ~-~~~--~~~~~~~-----~~-~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g~~~~~~~~l~ 232 (238)
. +++ +...... .. .......+ ...+.|.+.....++.| .|+|.+.|..-....++..++
T Consensus 331 ~~rdg~~g~~~~~~~~~~~s~~~~~~DGTy-svsS~L~V~~~~~e~~g~~YTC~V~H~sL~~g~rs~sVt 399 (401)
T 3f8u_B 331 ELRGGPGGRSQKAEGQRWLSALRHHSDGSV-SLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVT 399 (401)
T ss_dssp EEESSSSCSCEECCSEEEECCCEECTTSCE-EEEEEEECCCCCGGGTTCEEEEEEECTTSCTTCEEEEEE
T ss_pred EecCCCCCceecccccccccccccCCCceE-EEEEEEEEccCccccCCCEEEEEEEcCCCCCCcceEEEE
Confidence 5 743 2222111 00 00001111 11223444443323444 999999998733334444443
No 250
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.61 E-value=1e-14 Score=94.78 Aligned_cols=100 Identities=21% Similarity=0.414 Sum_probs=77.1
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
..+|.|+..+..+.+.+|+++.|.|.+. +.|.+.+.|++++..+..
T Consensus 13 ~~~p~f~~~p~~~~v~~G~~v~L~C~~~--------------------------g~p~p~v~W~k~~~~~~~-------- 58 (116)
T 2kkq_A 13 KRAPMFIYKPQSKKVLEGDSVKLECQIS--------------------------AIPPPKLFWKRNNEMVQF-------- 58 (116)
T ss_dssp CBCCCBSSCCCCEEEETTEEEEEEEEBC--------------------------CBSCCEEEEEETTEECCC--------
T ss_pred CCCCeEEeCCCcEEEeCCCcEEEEEEEe--------------------------ccCCCEEEEEECCEECcC--------
Confidence 4579999999999999999999999985 334668999998765422
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcc
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDI 139 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~ 139 (238)
...++.+.....+.++|.|.+++.+|+|.|+|.+.|. +.....+.|.|..+|..
T Consensus 59 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~ 113 (116)
T 2kkq_A 59 NTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQ 113 (116)
T ss_dssp CBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEECCSCC
T ss_pred CCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEEEEeCCCCC
Confidence 2356666655556679999999999999999999875 33455666777766543
No 251
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}
Probab=99.61 E-value=2.5e-14 Score=91.55 Aligned_cols=104 Identities=21% Similarity=0.416 Sum_probs=74.7
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
..|.|...+..+.+.+|+++.|.|.+.. .|.+.+.|++++..... ........
T Consensus 5 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~--------------------------~~~~~v~W~~~~~~~~~-~~~~~~~~ 57 (108)
T 3m45_A 5 GSQGQFPLTQNVTVVEGGTAILTCRVDQ--------------------------NDNTSLQWSNPAQQTLY-FDDKKALR 57 (108)
T ss_dssp ---CCCEECCCEEEETTSCEEEEEEESS--------------------------CSSCCEEEECTTCCEEE-ETTEECSC
T ss_pred cCCCccccCCeeEEEeCCcEEEEeEEcC--------------------------CCccEEEEEcCCCceEE-EcCCcccc
Confidence 4678888899999999999999999963 33567999997653222 11112223
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCC
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPP 137 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~ 137 (238)
+.|+.+........+|.|.+++.+|+|.|+|.+.+.+.....+.|.|..+|
T Consensus 58 ~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~L~V~~~P 108 (108)
T 3m45_A 58 DNRIELVRASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAYLTVLGVP 108 (108)
T ss_dssp CTTEEEEEESSSEEEEEECSCCGGGCEEEEEEECSSSCEEEEEEEEEECCC
T ss_pred cCcEEEeecCCCcEEEEECCCChhHCeEEEEEEEcCCCcEEEEEEEEEcCC
Confidence 557777655556779999999999999999999874445556677777654
No 252
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.60 E-value=2.3e-15 Score=95.14 Aligned_cols=85 Identities=21% Similarity=0.414 Sum_probs=64.7
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEE--EeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS--VESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
+..+.+.+|+.+.|.|.+.|.|.|.+.|++ ++..+..... ...... .....|.|.++..+|+|.|+|.|.|..|
T Consensus 12 p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k-~g~~i~~~~~---~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G 87 (100)
T 3knb_A 12 PSDISIDEGKVLTVACAFTGEPTPEVTWSC-GGRKIHSQEQ---GRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFG 87 (100)
T ss_dssp CSEEEEETTSEEEEEEEEEEESCCEEEEEE-TTEECCTTGG---GTEEEEECSSEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred CCcEEEeCCCeEEEEEEEEEecCCEEEEEE-CceEeeeecc---ceeeeecccceEEEEEcCCCccCCEEEEEEEEECCC
Confidence 456788999999999999999999999999 5555432111 011111 1224799999999999999999999999
Q ss_pred CCccceEEEEEE
Q psy7941 223 PTVSKRLMLHVH 234 (238)
Q Consensus 223 ~~~~~~~~l~V~ 234 (238)
.. +.++.|.|+
T Consensus 88 ~~-~~~~~l~V~ 98 (100)
T 3knb_A 88 SD-SATVNIHIR 98 (100)
T ss_dssp EE-EEEEEEEEE
T ss_pred EE-EEEEEEEEE
Confidence 44 788888886
No 253
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}
Probab=99.59 E-value=1.9e-13 Score=96.05 Aligned_cols=179 Identities=15% Similarity=0.161 Sum_probs=108.4
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccE
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARL 90 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 90 (238)
+...|+.+.|..|+++.|.|.+.- ..|. .+.|--.-.+...
T Consensus 5 v~v~P~~~~V~~G~Sv~l~Cs~~c-------------------------~~p~-~~~~~t~l~~~~~------------- 45 (196)
T 3bn3_B 5 ADLQPRVAFVERGGSLWLNCSTNC-------------------------PRPE-RGGLETSLRRNGT------------- 45 (196)
T ss_dssp EEEESSEEEEETTEEEEEEEEECC-------------------------SSCS-EEEEECSSEEEEE-------------
T ss_pred EEEcCCCcEEcCCCeEEEEEeCCC-------------------------CCCC-ccEEEEccCCeeE-------------
Confidence 345567788999999999999852 2222 3666543222111
Q ss_pred EEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc-ccCC
Q psy7941 91 SVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTP 168 (238)
Q Consensus 91 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~ 168 (238)
..+.....+.|.+++ +|.+.|.|.+... ......+.|.|+.+|........ ...+..|+.++|.|.+.+ +|..
T Consensus 46 ---~~g~~~~~~~ls~vs-~d~~~~~C~~~c~~~~~~~~v~l~Vy~~P~~v~i~~~-~~~~~~G~~~tL~C~v~~~~P~~ 120 (196)
T 3bn3_B 46 ---QRGLRWLARQLVDIR-EPETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPL-PPWQPVGENFTLSCRVPGAGPRA 120 (196)
T ss_dssp ---EEETTEEEEEEEEEC-SSEECCEEEEEETTEEEEEECEEEEEBCCCCCEECCC-CSSEETTSEEEEEEEETTCBCGG
T ss_pred ---ccccCceEEEEEEEc-cCCCceEEEEECCCCceEEEEEEEEecCCCcCEEccC-CccccCCCcEEEEEEeCCccCCC
Confidence 001111157888998 8888899998664 34455677888887775433222 123778999999999977 6765
Q ss_pred e--EEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCe-EEEEEeeeCCC-------CCccceEEEEEEee
Q psy7941 169 K--ITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG-AYQCIAANGVP-------PTVSKRLMLHVHCT 236 (238)
Q Consensus 169 ~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g-------~~~~~~~~l~V~~~ 236 (238)
. +.|++ ++..+............. .....+.+ .+.++|.| .|+|.|.+..+ ...+....|.|...
T Consensus 121 ~L~i~wlk-g~~~l~~~~~~~~~~~~~-~~t~~~~~-~~~r~D~g~~~sC~A~l~l~~~G~~l~~~~s~p~~L~v~~~ 195 (196)
T 3bn3_B 121 SLTLTLLR-GAQELIRRSFAGEPPRAR-GAVLTATV-LARREDHGANFSCRAELDLRPHGLGLFENSSAPRELRTFSL 195 (196)
T ss_dssp GEEEEEEE-TTEEEEEEECTTSCTTCC-CEEEEEEE-ECCGGGTTCEEEEEEEEECGGGTSCEEEEECCCEECCEECC
T ss_pred CcEEEEEe-CCEEeecccccccccccc-ceeEEEEE-eeeeccCCCeEEEEEEccCCccCCCccccccCCeEEEEeec
Confidence 4 89999 666554433211111100 01122333 35566767 99999998776 23345555666543
No 254
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.58 E-value=2.4e-14 Score=108.55 Aligned_cols=155 Identities=16% Similarity=0.201 Sum_probs=99.6
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEE
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT 93 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (238)
.+..+.+..|+.+.|.|.+.+ .|.+.+.|++++..+. ...++.+.
T Consensus 110 ~~~~~~~~~g~~~~l~C~~~g--------------------------~p~p~i~W~~~~~~~~---------~~~~~~~~ 154 (305)
T 2nzi_A 110 GMGAVHALRGEVVSIKIPFSG--------------------------KPDPVITWQKGQDLID---------NNGHYQVI 154 (305)
T ss_dssp SSCCEEEETTCCEEEEEEEEE--------------------------ESCCEEEEEESSSBCC---------SSSSCEEE
T ss_pred ccccEEecCCCEEEEEEEECC--------------------------CCCCEEEEEECCEECC---------CCCcEEEE
Confidence 345677889999999999853 3466799999765532 23344333
Q ss_pred EcCCCeEEEEEcc-cCcccCeEEEEEEecCC-CcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEE----------
Q psy7941 94 HNDANTWTLNIRS-VRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCK---------- 161 (238)
Q Consensus 94 ~~~~~~~~L~i~~-~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~---------- 161 (238)
.. ....+|.|.+ ++.+|.|.|+|.+.|.. .....+.+.|...|...... ......++.+.|.|.
T Consensus 155 ~~-~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~---~~~~~~~~~v~l~w~~p~~~g~~~i 230 (305)
T 2nzi_A 155 VT-RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGV---KVSDVSRDSVNLTWTEPASDGGSKI 230 (305)
T ss_dssp EC-SSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEE---EEESCCSSCEEEEEECCSCCSBSCE
T ss_pred Ec-CCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCc---eeeeccCCEEEEEEcCCccCCCCce
Confidence 22 2234899999 99999999999998763 34455667777655432210 111123445555554
Q ss_pred ----EccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 162 ----AKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 162 ----~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
+...+.+...|...+ ......+.|.++...+.|.|+|.|.|..|..
T Consensus 231 ~~y~v~~~~~~~~~w~~~~-----------------~~~~~~~~i~~l~~~~~y~~~~~A~N~~G~~ 280 (305)
T 2nzi_A 231 TNYIVEKCATTAERWLRVG-----------------QARETRYTVINLFGKTSYQFRVIAENKFGLS 280 (305)
T ss_dssp EEEEEEEEETTSCCEEEEE-----------------EESSSEEEECSCCSSCEEEEEEEEEETTEEC
T ss_pred eEEEEEEecCCCCccEECc-----------------cccCceEEecCCCCCCeEEEEEEEEeCCccc
Confidence 333333333443311 1124568899999999999999999999843
No 255
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.5e-14 Score=89.59 Aligned_cols=94 Identities=21% Similarity=0.346 Sum_probs=73.1
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
..+|.|...+..+.+.+|+++.|.|.+ + |.+.+.|+|++..+.
T Consensus 5 ~~p~~~~~~~~~~~v~~G~~v~l~C~v-~---------------------------p~p~v~W~k~g~~l~--------- 47 (100)
T 2yuz_A 5 SSGLKILTPLTDQTVNLGKEICLKCEI-S---------------------------ENIPGKWTKNGLPVQ--------- 47 (100)
T ss_dssp SCCCCCSBCCCCEEEETTSCCCEEEEC-S---------------------------SCCCEEEEETTEECC---------
T ss_pred CCCCEEeccCCceEEcCCCCEEEEEEe-C---------------------------CCCeEEEEECCEECC---------
Confidence 457899999999999999999999998 3 245699999876643
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCc
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPD 138 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~ 138 (238)
.+.++.+... ....+|.|.+++.+|+|.|+|.+.|. .....+.|.|..+|.
T Consensus 48 ~~~r~~i~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~-~~~~~a~L~V~~~P~ 98 (100)
T 2yuz_A 48 ESDRLKVVQK-GRIHKLVIANALTEDEGDYVFAPDAY-NVTLPAKVHVISGPS 98 (100)
T ss_dssp CCSSEEEEEC-SSEEEEEESSCCGGGCSEEEEEESSS-CCCEEEEEEEECCSC
T ss_pred CCCcEEEEEe-CCEEEEEECCCChhhCEEEEEEEcCC-CeeEEEEEEEeCCCC
Confidence 2445555443 33458999999999999999999877 556778888887663
No 256
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.3e-14 Score=93.39 Aligned_cols=110 Identities=21% Similarity=0.234 Sum_probs=79.4
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
..+|.|...+..+.+.+|+++.|.|.+. +.|.+.+.|++++..+..
T Consensus 6 ~~pP~i~~~p~~~~v~~G~~v~l~C~~~--------------------------g~p~p~i~W~k~g~~~~~-------- 51 (118)
T 2eo9_A 6 SGPPVIRQGPVNQTVAVDGTFVLSCVAT--------------------------GSPVPTILWRKDGVLVST-------- 51 (118)
T ss_dssp CCSCCCSBCCCCEEEETTCEEEEECBCC--------------------------CSSCCEEEEEESSSBCCT--------
T ss_pred CCCCEEEcCCCCEEEcCCCeEEEEEEEE--------------------------ecCCCEEEEEECCEECcC--------
Confidence 4578898899999999999999999985 344678999997765421
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCC
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEG 153 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g 153 (238)
...++...... +|.|.+++.+|+|.|+|.+.|... ....+.|.|..++.+.....+....+.+|
T Consensus 52 ~~~~~~~~~~~----~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~p~~~~~~~~~~~~~G 116 (118)
T 2eo9_A 52 QDSRIKQLENG----VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIPS 116 (118)
T ss_dssp TSTTEEEEETT----EEEEESCCGGGCCCEEEEEECSSCEEEEECCEEEECCSCCCCCCCCCCCCCCCC
T ss_pred CCCeEEEccCC----EEEEccCCcCCCEEEEEEEEcCCCcEEEEEEEEEEeCCCCccCCCCCCCccCCC
Confidence 23455544433 899999999999999999988633 44456688887665544444444444444
No 257
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.57 E-value=7.1e-14 Score=90.46 Aligned_cols=98 Identities=20% Similarity=0.294 Sum_probs=74.0
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
.+|.|...+..+.+.+|+++.|.|.+.. .|.+.+.|+|++..+. .
T Consensus 6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g--------------------------~p~p~i~W~k~~~~~~---------~ 50 (114)
T 2cqv_A 6 SGPQIIQFPEDQKVRAGESVELFGKVTG--------------------------TQPITCTWMKFRKQIQ---------E 50 (114)
T ss_dssp CCCEESCCCCSEEEETTCCEEEEEEEES--------------------------SSSCEEEEEESSSBCC---------C
T ss_pred CCCEEEeCCCCeEEeCCCeEEEEEEEEc--------------------------CCCCEEEEEECCEECc---------C
Confidence 5788989999999999999999999963 4577899999876542 2
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCccc
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDIS 140 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~ 140 (238)
..++.+... ....+|.|.+++.+|+|.|+|.+.|.. .....+.|.|...|...
T Consensus 51 ~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~P 104 (114)
T 2cqv_A 51 SEHMKVENS-ENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPP 104 (114)
T ss_dssp SSSEEEEEC-SSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEECSCSCC
T ss_pred CCCEEEEEc-CCEEEEEECCCChhcCEEEEEEEEECCCcEEEEEEEEEECCCCCC
Confidence 335554432 234589999999999999999998763 34456677887665543
No 258
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}
Probab=99.57 E-value=4.8e-14 Score=92.69 Aligned_cols=109 Identities=16% Similarity=0.307 Sum_probs=72.4
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccE
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARL 90 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 90 (238)
+...+..+.+.+|+++.|.|.+.. .|.+.+.|++.++...... ......+.|+
T Consensus 4 ~~~~~~~~~v~~G~~v~L~C~~~~--------------------------~p~~~v~W~~~~~~~~~~~-~~~~~~~~r~ 56 (124)
T 3rbg_A 4 LTNHTETITVEEGQTLTLKCVTSL--------------------------RKNSSLQWLTPSGFTIFLN-EYPVLKNSKY 56 (124)
T ss_dssp CCCSEEEEEEETTSCEEEEEECCC--------------------------CTTCEEEEECTTSCEEEET-TEECSCSSCC
T ss_pred ccCCCccEEEcCCCCEEEEeEEec--------------------------cCCCEEEEECCCCeEEEEe-ccccccCCcE
Confidence 456678899999999999999863 3456799998766543211 1112245667
Q ss_pred EEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCC
Q psy7941 91 SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSG 146 (238)
Q Consensus 91 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~ 146 (238)
.+.......++|.|.+++.+|+|.|+|.+.+.+.....+.|.|..+|.......+.
T Consensus 57 ~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~g~~~~~~~l~V~~~P~~~~~~~P~ 112 (124)
T 3rbg_A 57 QLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLATMKGEFCRYPS 112 (124)
T ss_dssp EEEEEETTEEEEEESSCCGGGCEEEEEEEESSSEEEEEEEEEEECC----------
T ss_pred EEEeCCCCEEEEEECCCChHHCEEEEEEEEcCCCCcEEEEEEEEeCCCCCcccccC
Confidence 66554445679999999999999999999877445566778888877654433333
No 259
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A
Probab=99.57 E-value=6.2e-14 Score=87.18 Aligned_cols=90 Identities=16% Similarity=0.134 Sum_probs=67.6
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
..+|.|..++.++.+.+|+++.|.|.+.. +.+.++|+|++..+.
T Consensus 3 ~~~~~~~~~~~~~~v~~G~~v~l~C~v~~---------------------------~~~~v~W~k~g~~i~--------- 46 (93)
T 1waa_A 3 MALIEVEKPLYGVEVFVGETAHFEIELSE---------------------------PDVHGQWKLKGQPLA--------- 46 (93)
T ss_dssp CCCCCEEECCCCEEEETTSCEEEEEEESS---------------------------SSCCCEEEETTEECC---------
T ss_pred CCCcEeeccCcceEEeCCCCEEEEEEECC---------------------------CCCeEEEEECCEECc---------
Confidence 45789999999999999999999999852 135699999876543
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEc
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVI 135 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~ 135 (238)
.+.++.+... ....+|.|.+++.+|+|.|+|.+.|. ...+.|.|..
T Consensus 47 ~~~~~~i~~~-g~~~~L~I~~v~~~D~G~Y~C~a~n~---~~sa~L~V~~ 92 (93)
T 1waa_A 47 ASPDCEIIED-GKKHILILHNCQLGMTGEVSFQAANT---KSAANLKVKE 92 (93)
T ss_dssp CBTTEEEEEE-TTEEEEEECSCCGGGCEEEEEEETTE---EEEEEEEEEC
T ss_pred CCCCEEEEEE-CCEEEEEECCCChhhCEEEEEEECCC---cEEEEEEEEc
Confidence 2345554432 23448999999999999999999653 3455666653
No 260
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=99.57 E-value=3.6e-14 Score=89.39 Aligned_cols=93 Identities=27% Similarity=0.301 Sum_probs=69.2
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
.+|.|...+..+.+.+|+++.|.|.+.+ .|.+.+.|++++..+..
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g--------------------------~p~p~v~W~k~g~~~~~--------- 48 (99)
T 1g1c_A 4 EAPKIFERIQSQTVGQGSDAHFRVRVVG--------------------------KPDPECEWYKNGVKIER--------- 48 (99)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEE--------------------------ESCCEEEEEETTEECCC---------
T ss_pred CCCceEecCcceEEcCCCcEEEEEEEEE--------------------------eCCCEEEEEECCEECCC---------
Confidence 5788988999999999999999999863 34667999998765432
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEE
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVV 134 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~ 134 (238)
..++..........+|.|.+++.+|+|.|+|.+.|... ....+.|.|.
T Consensus 49 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~ 97 (99)
T 1g1c_A 49 SDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQ 97 (99)
T ss_dssp CSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEECCCcEEEEEEEEEe
Confidence 33444333334556899999999999999999987633 3444555554
No 261
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.6e-14 Score=91.23 Aligned_cols=86 Identities=27% Similarity=0.434 Sum_probs=67.5
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
+....+..|+.+.|.|.+.|.|.|.+.|++ ++..+... ........++.|.|.++..+|.|.|+|.|.|..|..
T Consensus 15 p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~-~~~~~~~~-----~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 88 (100)
T 2edj_A 15 PANQTLAVDGTALLKCKATGDPLPVISWLK-EGFTFPGR-----DPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGET 88 (100)
T ss_dssp CCCEEEESSSEEEECCEEECSSCCEEEEEE-SSSEESSS-----CSSCEECTTCCEEEESCCTTTCCEEEEEEECSSCCC
T ss_pred cCCEEEcCCCcEEEEEEEEEcCCCEEEEEE-CCEECCCC-----CCCEEEcCCCEEEEccCCcccCEEEEEEEEcCCCCE
Confidence 445678899999999999999999999999 44443211 112223345589999999999999999999999954
Q ss_pred ccceEEEEEEeec
Q psy7941 225 VSKRLMLHVHCTY 237 (238)
Q Consensus 225 ~~~~~~l~V~~~p 237 (238)
+..+.|.|..+|
T Consensus 89 -~~~~~l~V~~~~ 100 (100)
T 2edj_A 89 -SWSAVLDVTESG 100 (100)
T ss_dssp -BCCEEEEEESCC
T ss_pred -EEEEEEEEecCC
Confidence 888999998765
No 262
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A
Probab=99.56 E-value=7.4e-13 Score=92.35 Aligned_cols=159 Identities=18% Similarity=0.267 Sum_probs=100.3
Q ss_pred eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEE
Q psy7941 12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLS 91 (238)
Q Consensus 12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 91 (238)
...|+...|.+|+++.|.|.+... .|. .+.|...-.+... ...
T Consensus 3 ~v~P~~~~V~~G~Sv~l~Cs~~c~-------------------------~p~-~~~~~t~l~~~~~------~~~----- 45 (185)
T 1iam_A 3 SVSPSKVILPRGGSVLVTCSTSCD-------------------------QPK-LLGIETPLPKKEL------LLP----- 45 (185)
T ss_dssp EEESSEEEEETTEEEEEEEEECSS-------------------------SCS-EEEEECSSCEEEE------CSS-----
T ss_pred EEECCCcEEeCCCCEEEEEEccCC-------------------------CCc-cceEEeeCCCccE------ecc-----
Confidence 345667789999999999998522 222 2566542211110 000
Q ss_pred EEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc-ccCC-
Q psy7941 92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTP- 168 (238)
Q Consensus 92 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~- 168 (238)
..+...|.|.+++. | |.|.|.+... ......+.+.|..+|........ ...+.+|+.++|.|.+.| .|.+
T Consensus 46 ----~~~~~~l~l~~vs~-~-g~y~C~~~c~~~~~~~~~~l~V~~~P~~v~i~~~-~~~~~~G~~~tL~C~v~g~~P~~~ 118 (185)
T 1iam_A 46 ----GNNRKVYELSNVQE-D-SQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPL-PSWQPVGKQLTLRCQVEGGAPRAQ 118 (185)
T ss_dssp ----SSSEEEEEEEEECS-C-BCCEEEEECSSCEEEEECEEEEEBCCSEEEECCC-CSEECTTSEEEEEEEEECCBCGGG
T ss_pred ----CCceeEEEEEecCc-C-CEEEEEEECCCCceEEEEEEEEeCCCCCCEEccC-CccccCCCcEEEEEEcCCccCCCC
Confidence 11112688999984 4 9999999655 33455667888887775443322 234789999999999987 6665
Q ss_pred -eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCe-EEEEEeeeCCC
Q psy7941 169 -KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG-AYQCIAANGVP 222 (238)
Q Consensus 169 -~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g 222 (238)
.|+|++ ++..+...... . .. .+..|.+ .+.++|.| .|+|.|.|..+
T Consensus 119 l~i~w~k-g~~~l~~~~~~-~-~~----~~~tl~~-~~~reD~g~~~sC~A~~~l~ 166 (185)
T 1iam_A 119 LTVVLLR-GEKELKREPAV-G-EP----AEVTTTV-LVRRDHHGAQFSCRTELDLR 166 (185)
T ss_dssp EEEEEEE-TTEEEEEEECC-T-TT----EEEEEEE-ECCSSCSSCEEEEEEEEECG
T ss_pred cEEEEEe-CCEEcccccCC-C-cc----ccEEEEE-eceeccCCCeEEEEEEecCc
Confidence 589999 66555433211 1 11 1113443 36667777 99999999876
No 263
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=5.1e-14 Score=90.53 Aligned_cols=99 Identities=19% Similarity=0.249 Sum_probs=75.2
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
..+|.|...+..+.+.+|+++.|.|.+. +.|.+.+.|++++..+..
T Consensus 6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~--------------------------g~p~p~v~W~k~g~~~~~-------- 51 (110)
T 2dm2_A 6 SGAPFFEMKLKHYKIFEGMPVTFTCRVA--------------------------GNPKPKIYWFKDGKQISP-------- 51 (110)
T ss_dssp SCCCCBSSCCCCEEEETTCCEEEEEEBC--------------------------CSSCCEEEEECSSCBCCT--------
T ss_pred CCCCEEEecCcCeEEeCCCeEEEEEEEE--------------------------ecCCCEEEEEECCEECCC--------
Confidence 4578899899999999999999999985 344678999997765421
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCc
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPD 138 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~ 138 (238)
...++.+.....+..+|.|.+++.+|+|.|+|.+.|. +.....+.|.|..++.
T Consensus 52 ~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~~~ 105 (110)
T 2dm2_A 52 KSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNS 105 (110)
T ss_dssp TCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEECTTCCEEECCCEEEECCSC
T ss_pred CCCeEEEEECCCcEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEEECCCC
Confidence 2345655555455668999999999999999999876 3345556677776553
No 264
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=99.55 E-value=1.3e-14 Score=93.05 Aligned_cols=98 Identities=19% Similarity=0.401 Sum_probs=61.0
Q ss_pred EEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCC
Q psy7941 131 LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEM 210 (238)
Q Consensus 131 l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 210 (238)
+.+..+|.+.. .+....+..|+.+.|.|.+.|.|.+.+.|++++ ..+... ........+..|.|.++..+|+
T Consensus 5 v~~~~~P~~~~--~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~-~~~~~~-----~~~~~~~~~~~L~i~~v~~~D~ 76 (108)
T 3kvq_A 5 VLERVAPTITG--NLENQTTSIGESIEVSCTASGNPPPQIMWFKDN-ETLVED-----SGIVLKDGNRNLTIRRVRKEDE 76 (108)
T ss_dssp ------CCCBS--CCCCEEEETTCCEEEECBCC----CCEEEEESS-SBCCCB-----TTEEEETTTTEEEECSCCGGGC
T ss_pred ECccCCCceec--CCCCeEEeCCCeEEEEEECcCcCCCeEEEEECC-eEcccC-----CCeEEeCCCcEEEEeecCcccC
Confidence 44555666554 345577889999999999999999999999944 333211 1112223346899999999999
Q ss_pred eEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 211 GAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 211 G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
|.|+|.|.|..|. ....+.|.|..+|
T Consensus 77 G~Y~C~a~n~~g~-~~~~~~l~V~~~~ 102 (108)
T 3kvq_A 77 GLYTCQACSVLGC-AKVEAFFIIEGAQ 102 (108)
T ss_dssp EEEEEEEC----C-EEEEEEEEEEC--
T ss_pred EEEEEEEEeCCCc-eEEEEEEEEeCCC
Confidence 9999999999994 4788889888765
No 265
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.54 E-value=7.3e-14 Score=90.68 Aligned_cols=94 Identities=23% Similarity=0.372 Sum_probs=69.4
Q ss_pred CCcccccccCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEee---ceEEEEEeecCCCeE
Q psy7941 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVES---EVLSLTKVTRSEMGA 212 (238)
Q Consensus 136 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~G~ 212 (238)
+|.+.. .+....+.+|+.+.|.|.+.|.|.+.+.|++ ++..+.... ......... ..|.|.++..+|+|.
T Consensus 15 ~p~f~~--~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k-~~~~~~~~~----~~~~~~~~~~~~~~L~I~~v~~~D~G~ 87 (116)
T 2kkq_A 15 APMFIY--KPQSKKVLEGDSVKLECQISAIPPPKLFWKR-NNEMVQFNT----DRISLYQDNTGRVTLLIKDVNKKDAGW 87 (116)
T ss_dssp CCCBSS--CCCCEEEETTEEEEEEEEBCCBSCCEEEEEE-TTEECCCCB----TTEEEEECTTCEEEEEEEEECGGGCEE
T ss_pred CCeEEe--CCCcEEEeCCCcEEEEEEEeccCCCEEEEEE-CCEECcCCC----CeEEEEeCCCCeEEEEECCCCcccCEE
Confidence 444433 3455788999999999999999999999999 554433211 111111111 279999999999999
Q ss_pred EEEEeeeCCCCCccceEEEEEEeec
Q psy7941 213 YQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 213 y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
|+|.|.|..|. .+..+.|.|..+|
T Consensus 88 Y~C~a~N~~G~-~~~~~~l~V~~~p 111 (116)
T 2kkq_A 88 YTVSAVNEAGV-TTCNTRLDVTARP 111 (116)
T ss_dssp EEEEEEETTEE-EEEEEEEEEECCS
T ss_pred EEEEEEcCCCe-EEEEEEEEEeCCC
Confidence 99999999994 4788899998876
No 266
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X
Probab=99.54 E-value=9.3e-15 Score=92.87 Aligned_cols=84 Identities=19% Similarity=0.179 Sum_probs=62.3
Q ss_pred cCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceE----EEeeceEEEEEeecCCCeEEEEEeeeCCCCCcc
Q psy7941 151 PEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVF----SVESEVLSLTKVTRSEMGAYQCIAANGVPPTVS 226 (238)
Q Consensus 151 ~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~ 226 (238)
..+..+.|.|.+.|.|.|.++|++ ++..+..... ...... ....+.|.|.++..+|+|.|+|.|.|..|. .+
T Consensus 14 ~~~~~~~~~c~v~G~P~P~i~W~k-~g~~l~~~~~--~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~ 89 (103)
T 1wwb_X 14 TSDHHWCIPFTVKGNPKPALQWFY-NGAILNESKY--ICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK-DE 89 (103)
T ss_dssp CCCCEEEEEEEEECSSCCEEEEEE-TTEEECCCSS--EEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCE-EE
T ss_pred eECcEEEEEEEEEEeCCCEEEEEE-CCEECCCCCc--EeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCc-Ee
Confidence 457789999999999999999999 5555432210 000000 112335999999999999999999999994 48
Q ss_pred ceEEEEEEeecC
Q psy7941 227 KRLMLHVHCTYL 238 (238)
Q Consensus 227 ~~~~l~V~~~p~ 238 (238)
.++.|.|..+|.
T Consensus 90 ~~~~l~V~~~P~ 101 (103)
T 1wwb_X 90 KQISAHFMGWPG 101 (103)
T ss_dssp EEEEECCSCCCC
T ss_pred EEEEEEECCCCC
Confidence 889999888773
No 267
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.54 E-value=6.4e-14 Score=88.40 Aligned_cols=94 Identities=21% Similarity=0.287 Sum_probs=67.7
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
.+|.|...+..+.+.+|+++.|.|.+.+ .|.+.+.|++++..+..
T Consensus 4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g--------------------------~p~p~v~W~~~g~~~~~--------- 48 (100)
T 2kdg_A 4 GPPRFIQVPENMSIDEGRFCRMDFKVSG--------------------------LPAPDVSWYLNGRTVQS--------- 48 (100)
T ss_dssp EEEECCCCCCCEEEETTCCEEEEEECEE--------------------------ESCCEEEEEETTEEECC---------
T ss_pred CCCeEEeCCCCEEecCCCEEEEEEEEEe--------------------------eCCCEEEEEECCEECcC---------
Confidence 4788888899999999999999999853 34667999998765432
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEc
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVI 135 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~ 135 (238)
..+........+..+|.|.+++.+|+|.|+|.+.|... ....+.|.|..
T Consensus 49 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~ 98 (100)
T 2kdg_A 49 DDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98 (100)
T ss_dssp CSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred CCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEEEEEe
Confidence 11122222233445899999999999999999987643 34455566653
No 268
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.8e-14 Score=92.55 Aligned_cols=102 Identities=22% Similarity=0.300 Sum_probs=74.3
Q ss_pred cCCCccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee
Q psy7941 2 VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE 81 (238)
Q Consensus 2 ~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~ 81 (238)
|.|.+.++.|...+..+.+.+|+++.|.|.+.. .|.+.+.|+|++..+..
T Consensus 7 l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g--------------------------~p~p~v~W~k~g~~l~~---- 56 (115)
T 2cr6_A 7 GLVQGRRVHIIEDLEDVDVQEGSSATFRCRISP--------------------------ANYEPVHWFLDKTPLHA---- 56 (115)
T ss_dssp CCCCSSCCEEEECCCEEEEETTSCEECCCEEES--------------------------TTCCSCEEEESSCEECC----
T ss_pred EEEcCCCCeEeccCccEEEeCCCcEEEEEEEcC--------------------------CCCCccEEEECCEECCC----
Confidence 456666778999999999999999999999963 34567999998765422
Q ss_pred eEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccc
Q psy7941 82 HVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISS 141 (238)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~ 141 (238)
+.++.+........+|.|.+++.+|+|.|+|.+ +.....+.|.|..+|.+..
T Consensus 57 -----~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~---g~~~~~~~L~V~~~p~~~~ 108 (115)
T 2cr6_A 57 -----NELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA---GDQRASAALRVTEKPSVFS 108 (115)
T ss_dssp -----SSSCCBCCBTTTBCCBEECSCCTTTCEEEEEEE---TTEECCEEEEEECCSSCCS
T ss_pred -----CCcEEEEEcCCCEEEEEEcCCChhhCEEEEEEE---CCeeEEEEEEEECCCceec
Confidence 233333222233448999999999999999995 2334557888888776543
No 269
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.53 E-value=3.2e-13 Score=101.35 Aligned_cols=173 Identities=17% Similarity=0.246 Sum_probs=102.1
Q ss_pred ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEE
Q psy7941 13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSV 92 (238)
Q Consensus 13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 92 (238)
..|+.+.|.+|+++.|.|.+... .|. .+.|.-.-.+.. ....
T Consensus 4 v~P~~~~V~~G~sv~l~Cs~~c~-------------------------~p~-~~~~~t~l~~~~-------~~~~----- 45 (291)
T 1mq8_A 4 VSPSKVILPRGGSVLVTCSTSCD-------------------------QPK-LLGIETPLPKKE-------LLLP----- 45 (291)
T ss_dssp EECSEEEECTTCEEEEEEEECCS-------------------------SCS-EEEEECSSCCCC-------CCCS-----
T ss_pred EeCCccEEcCCCeEEEEEeCCCC-------------------------CCc-cceEEecCCCcc-------cccC-----
Confidence 45677899999999999998522 222 367754211110 0000
Q ss_pred EEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc-ccCC--
Q psy7941 93 THNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTP-- 168 (238)
Q Consensus 93 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-- 168 (238)
+...-.|.|.+++.. |.|.|++...+. ....+.+.|..+|........ ...+.+|+.++|.|.+.+ +|..
T Consensus 46 ---g~~~~~~~l~~v~~~--~~y~C~~~~~~~~~~~~v~l~V~~~P~~v~I~~~-~~~~~~G~~~~LtC~v~g~~P~~~l 119 (291)
T 1mq8_A 46 ---GNNRKVYELSNVQED--SQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPL-PSWQPVGKNLTLRCQVEGGAPRANL 119 (291)
T ss_dssp ---CSSEEEEEEESCCSC--CCCEEEEECSSCEEEEECEEEECBCCSCCCBCCC-CSBCCSSCCCEEEEEECCCBSTTTE
T ss_pred ---CCceEEEEEEecccC--CeEEEEEEcCCccEEEEEEEEEecCCCCCEEecC-CccccCCCCEEEEEEecCccCCCCc
Confidence 111115677787743 469999965533 344557888877765433222 134778999999999977 5655
Q ss_pred eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCe-EEEEEeeeCCCC-------CccceEEEEEEeec
Q psy7941 169 KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG-AYQCIAANGVPP-------TVSKRLMLHVHCTY 237 (238)
Q Consensus 169 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g~-------~~~~~~~l~V~~~p 237 (238)
.|+|++ ++..+...... .. .....+.+. +.++|.| .|+|.|.|..+. ..++...|.|+++|
T Consensus 120 ~itW~k-g~~~l~~~~~~--~~----~~~~~l~~~-~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P 188 (291)
T 1mq8_A 120 TVVLLR-GEKELKREPAV--GE----PAEVTTTVL-VRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLP 188 (291)
T ss_dssp EEEEES-SSSEEEEEECC--BT----TEEEEEECC-CSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC----
T ss_pred EEEEEE-CCEEeecccCC--CC----CceEEEEee-eeeccCCceEEEEEEecCCccCCccccccccceEEEEEecC
Confidence 599999 55555433211 00 012234444 3445555 999999997652 24677888998876
No 270
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=99.52 E-value=1.8e-13 Score=87.64 Aligned_cols=97 Identities=19% Similarity=0.212 Sum_probs=66.3
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCC---ceEEEEeCCceeeeeeeee
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA---MKVAWIKADTKAVLAIHEH 82 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~W~~~~~~~~~~~~~~ 82 (238)
+..|.|...|..+.+.+|+++.|.|.+.+ .|. +.+.|+|++.....
T Consensus 2 ~p~p~f~~~p~~~~v~~G~~v~L~C~~~g--------------------------~p~~~~p~v~W~k~~~~~~~----- 50 (108)
T 3cx2_A 2 DPIGLFVMRPQDGEVTVGGSITFSARVAG--------------------------ASLLKPPVVKWFKGKWVDLS----- 50 (108)
T ss_dssp CCCCSCSBCCCCEEEETTCCEEEEEEEEC--------------------------C-CCSCCEEEEEETTTEEGG-----
T ss_pred CCccEEEeCCCcEEEeCCCCEEEEEEECC--------------------------CccCCCcEEEEccCCccccc-----
Confidence 46789999999999999999999999963 234 67999996521110
Q ss_pred EeecCccEEEEEc-----CCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEE
Q psy7941 83 VITNNARLSVTHN-----DANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVV 134 (238)
Q Consensus 83 ~~~~~~~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~ 134 (238)
.....++.+... .....+|.|.+++.+|+|.|+|.+.|... ....+.|.|.
T Consensus 51 -~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 107 (108)
T 3cx2_A 51 -SKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107 (108)
T ss_dssp -GGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred -ccCCceEEEeeEEecccccceEEEEEecCCCccCEEEEEEEecCCCceEEEEEEEEe
Confidence 001223333210 11245899999999999999999987643 3445556553
No 271
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.52 E-value=7e-14 Score=90.51 Aligned_cols=86 Identities=20% Similarity=0.237 Sum_probs=65.9
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEE--EeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS--VESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
+....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+.... ..... .....|.|.++..+|+|.|+|.|.|..|
T Consensus 14 ~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~-~~~~~~~~-----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g 87 (114)
T 2cqv_A 14 PEDQKVRAGESVELFGKVTGTQPITCTWMKF-RKQIQESE-----HMKVENSENGSKLTILAARQEHCGCYTLLVENKLG 87 (114)
T ss_dssp CCSEEEETTCCEEEEEEEESSSSCEEEEEES-SSBCCCSS-----SEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSC
T ss_pred CCCeEEeCCCeEEEEEEEEcCCCCEEEEEEC-CEECcCCC-----CEEEEEcCCEEEEEECCCChhcCEEEEEEEEECCC
Confidence 4557789999999999999999999999994 44332111 11111 1145799999999999999999999999
Q ss_pred CCccceEEEEEEeec
Q psy7941 223 PTVSKRLMLHVHCTY 237 (238)
Q Consensus 223 ~~~~~~~~l~V~~~p 237 (238)
. .+..+.|.|..+|
T Consensus 88 ~-~~~~~~l~V~~~p 101 (114)
T 2cqv_A 88 S-RQAQVNLTVVDKP 101 (114)
T ss_dssp E-EECCEEEEEECSC
T ss_pred c-EEEEEEEEEECCC
Confidence 4 4778899998755
No 272
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=6.2e-14 Score=90.11 Aligned_cols=99 Identities=19% Similarity=0.323 Sum_probs=73.2
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
..+|.|...+..+.+.+|+++.|.|.+.. .|.+.+.|++++..+..
T Consensus 7 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~g--------------------------~p~p~v~W~~~g~~~~~-------- 52 (110)
T 2dm3_A 7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSG--------------------------LPTPDLSWQLDGKPVRP-------- 52 (110)
T ss_dssp CCCCEEEECCCEEEEESSSCBCCEEEEEC--------------------------SSCCEEECBBSSSBCCC--------
T ss_pred CCCCcEEeCCCcEEEeCCCEEEEEEEEEE--------------------------cCCCEEEEEECCEECCC--------
Confidence 45889999999999999999999999953 34668999998765432
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCcc
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDI 139 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~ 139 (238)
..+...........+|.|.+++.+|+|.|+|.+.|.. .....+.|.|..++..
T Consensus 53 -~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~ 106 (110)
T 2dm3_A 53 -DSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG 106 (110)
T ss_dssp -CSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEECSSCEEEECCEEEEECCCCS
T ss_pred -CCceEEEEecCCeEEEEEeeCCcccCEEEEEEEECCCCEEEEEEEEEEeCCCCC
Confidence 2222222223345589999999999999999998753 3455667888766543
No 273
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*
Probab=99.52 E-value=2e-13 Score=97.86 Aligned_cols=168 Identities=17% Similarity=0.240 Sum_probs=101.4
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeee-eeeeEe
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLA-IHEHVI 84 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~-~~~~~~ 84 (238)
.+...+..+.+.+|+++.|.|.+.... ...+.||++... .+.. ......
T Consensus 5 ~v~Q~p~~~~v~~G~svtL~C~~s~~~--------------------------~~~v~Wyrq~~g~~~~~l~~~~~~~~~ 58 (210)
T 2eys_A 5 QVEQSPQSLIILEGKNCTLQCNYTVSP--------------------------FSNLRWYKQDTGRGPVSLTIMTFSENT 58 (210)
T ss_dssp CEEEECSEEEEETTCCEEEEEEECCSS--------------------------CCEEEEEEECTTSCCEEEEEEETTCSE
T ss_pred eEEEeCCEEEEecCCCEEEEEEECCCC--------------------------CCeEEEEEeCCCCCCEEEEEEecCCCC
Confidence 455668889999999999999986432 235999996421 1111 110111
Q ss_pred ecCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCC----C--cceeeEEEEEcCC---cccccccCCceeecCCC
Q psy7941 85 TNNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNP----M--TKQMAFLEVVIPP---DISSEETSGDMMVPEGG 154 (238)
Q Consensus 85 ~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~----~--~~~~~~l~v~~~~---~~~~~~~~~~~~~~~g~ 154 (238)
...+||.+.. .....++|.|.+++.+|+|.|+|.+.+.. . ....+.|.|.... .+.+.... ....
T Consensus 59 ~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~fg~gt~L~V~~~~~~~~P~V~~~~-----~~~~ 133 (210)
T 2eys_A 59 KSNGRYTATLDADTKQSSLHITASQLSDSASYICVVSDRGSTLGRLYFGRGTQLTVWPDIQNPDPAVYQLR-----DSKS 133 (210)
T ss_dssp EEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEESCSSTTCCEEECCCEEEEEECCCSSCCCEEEEEC-----CCSS
T ss_pred ccCCCEEEEEcCCCCEEEEEEccCCcccCceEEEEEEccCCCcccceECCCEEEEEECCCCCCCCeEEecC-----CCCC
Confidence 2357888764 34567899999999999999999997632 1 1123457775421 11111000 1122
Q ss_pred cEEEEEEEccc-cCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 155 SAKLVCKAKGY-PTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 155 ~~~l~C~~~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
.+.|.|.+.|. |...+.+.. + ..........|.+..+...+.|.|.|.+.|..+
T Consensus 134 ~~tl~Cl~~gf~P~~~v~~~~-~-------------~~~~~t~~~~l~~~~~~~~~~~~~~w~~~~~~~ 188 (210)
T 2eys_A 134 SDKSVCLFTDFDSQTNVSQSK-D-------------SDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFA 188 (210)
T ss_dssp SSCEEEEEESCCTTCCCCCCS-S-------------TTEEECCCEEEEETTTTEEEEEEEEEECSTTCC
T ss_pred CceEEEEcccccCCcEecccc-C-------------cceEccCchhcchhcccccccchhhccCCCceE
Confidence 68999999884 444442221 1 111112233566666677788999999888664
No 274
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=8.1e-14 Score=90.79 Aligned_cols=87 Identities=17% Similarity=0.223 Sum_probs=66.9
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
.....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.. . ............|.|.++..+|+|.|+|.|.|..| .
T Consensus 31 ~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k-~g~~l~~-~---~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G-~ 104 (118)
T 2e7c_A 31 RQTYIRKVGEQLNLVVPFQGKPRPQVVWTK-GGAPLDT-S---RVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENM-K 104 (118)
T ss_dssp SSCEEEESSSCEEEEEEEEEESCCEEEEEE-TTEECCC-S---SCEEEECSSEEEEEESSCCTTTCEEEEEEEECSSC-E
T ss_pred CCCEEEECCCEEEEEEEEccCCCCEEEEEE-CCEECCC-C---cEEEEECCCeEEEEECCCChhcCEEEEEEEEeCCC-e
Confidence 355678899999999999999999999999 5554421 0 11111111234599999999999999999999999 4
Q ss_pred ccceEEEEEEeec
Q psy7941 225 VSKRLMLHVHCTY 237 (238)
Q Consensus 225 ~~~~~~l~V~~~p 237 (238)
.+..+.|.|..+|
T Consensus 105 ~~~~~~l~V~~~P 117 (118)
T 2e7c_A 105 DTATIRIRVVEKA 117 (118)
T ss_dssp ECCEEEEEEECCC
T ss_pred EEEEEEEEEEcCC
Confidence 5889999998877
No 275
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1e-13 Score=87.52 Aligned_cols=93 Identities=24% Similarity=0.341 Sum_probs=68.7
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
..+|.|...+..+.+.+|+++.|.|.+.. .|.+.+.|++++..+..
T Consensus 6 ~~~P~i~~~p~~~~v~~G~~~~l~C~~~g--------------------------~p~p~v~W~~~~~~~~~-------- 51 (100)
T 2edj_A 6 SGPPIILQGPANQTLAVDGTALLKCKATG--------------------------DPLPVISWLKEGFTFPG-------- 51 (100)
T ss_dssp CSSCEEEECCCCEEEESSSEEEECCEEEC--------------------------SSCCEEEEEESSSEESS--------
T ss_pred CCCCEEEeCcCCEEEcCCCcEEEEEEEEE--------------------------cCCCEEEEEECCEECCC--------
Confidence 35788888899999999999999999963 44677999998765431
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcC
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIP 136 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~ 136 (238)
...++..... .+|.|.+++.+|+|.|+|.+.|. +.....+.|.|..+
T Consensus 52 ~~~~~~~~~~----~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~ 99 (100)
T 2edj_A 52 RDPRATIQEQ----GTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTES 99 (100)
T ss_dssp SCSSCEECTT----CCEEEESCCTTTCCEEEEEEECSSCCCBCCEEEEEESC
T ss_pred CCCCEEEcCC----CEEEEccCCcccCEEEEEEEEcCCCCEEEEEEEEEecC
Confidence 1233332221 27999999999999999999875 44455666777654
No 276
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.52 E-value=8.8e-14 Score=87.77 Aligned_cols=87 Identities=24% Similarity=0.439 Sum_probs=66.1
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEee--ceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVES--EVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
+....+..|+.+.|.|.+.|.|.|.+.|++ ++..+.... ......... ..|.|.++..+|+|.|+|.|.|..|
T Consensus 12 p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~-~g~~~~~~~----~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g 86 (100)
T 2kdg_A 12 PENMSIDEGRFCRMDFKVSGLPAPDVSWYL-NGRTVQSDD----LHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAG 86 (100)
T ss_dssp CCCEEEETTCCEEEEEECEEESCCEEEEEE-TTEEECCCS----SSCEEEETTTEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred CCCEEecCCCEEEEEEEEEeeCCCEEEEEE-CCEECcCCC----cEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCC
Confidence 445678899999999999999999999999 555443221 111112222 3799999999999999999999999
Q ss_pred CCccceEEEEEEeec
Q psy7941 223 PTVSKRLMLHVHCTY 237 (238)
Q Consensus 223 ~~~~~~~~l~V~~~p 237 (238)
. .+.++.|.|...|
T Consensus 87 ~-~~~~~~l~V~~~e 100 (100)
T 2kdg_A 87 E-ATFTVQLDVLAKE 100 (100)
T ss_dssp E-EEEEEEEEEECCC
T ss_pred e-EEEEEEEEEEecC
Confidence 5 4888888887653
No 277
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}
Probab=99.51 E-value=4.6e-13 Score=90.45 Aligned_cols=104 Identities=17% Similarity=0.340 Sum_probs=74.3
Q ss_pred cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCc
Q psy7941 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNA 88 (238)
Q Consensus 9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ 88 (238)
..|...+..+.+.+|+++.|.|.+.. .+.+.+.|++.+...+.. .........
T Consensus 39 ~~~~~~p~~~~v~~G~~v~L~C~~~~--------------------------~~~~~i~W~~~~~~~i~~-~~~~~~~~~ 91 (145)
T 1z9m_A 39 DDSQPWTSDETVVAGGTVVLKCQVKD--------------------------HEDSSLQWSNPAQQTLYF-GEKRALRDN 91 (145)
T ss_dssp CTTCCBCCCEEEETTSCEEEEEECSC--------------------------CTTCCEEEECTTCCEEEE-TTEECSCCT
T ss_pred cceecCCceEEEEcCCCEEEEEEEcC--------------------------CCCcEEEEECCCCcEEEE-CCceecccC
Confidence 45567788899999999999999853 234569999765544322 111122346
Q ss_pred cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcc
Q psy7941 89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDI 139 (238)
Q Consensus 89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~ 139 (238)
|+..........+|.|.+++.+|+|.|+|.+.+.+.....+.|.|..+|..
T Consensus 92 r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~L~V~~~P~~ 142 (145)
T 1z9m_A 92 RIQLVTSTPHELSISISNVALADEGEYTCSIFTMPVRTAKSLVTVLGIPQK 142 (145)
T ss_dssp TEEEEEECSSEEEEEECSCCGGGCEEEEEEECSSSCEEEEEEEEEECCCC-
T ss_pred CEEEecCCCCeEEEEECCCChhhCEEEEEEEEcCCCceEEEEEEEEeCCCC
Confidence 777665555677999999999999999999987744455667888776643
No 278
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.51 E-value=6.9e-14 Score=91.18 Aligned_cols=92 Identities=18% Similarity=0.174 Sum_probs=65.0
Q ss_pred ccccCCceeecCCCcEEEEEEEccc---cCCeEEEEeCCCeeeEeecCCCCCcceE-------EEeeceEEEEEeecCCC
Q psy7941 141 SEETSGDMMVPEGGSAKLVCKAKGY---PTPKITWRREDNKEIIVRSNPPSSQKVF-------SVESEVLSLTKVTRSEM 210 (238)
Q Consensus 141 ~~~~~~~~~~~~g~~~~l~C~~~~~---p~~~~~W~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~ 210 (238)
+...+..+.+.+|+.+.|.|.+.+. |.|.|.|+++ +....... ........ ......|.|.++...|+
T Consensus 10 F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kg-k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Da 87 (126)
T 2dav_A 10 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKG-KWMDLASK-AGKHLQLKETFERHSRVYTFEMQIIKAKDNFA 87 (126)
T ss_dssp CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEES-SSCCHHHH-TTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred EEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeC-cCcccCCC-CCceEEEccccccccccceEEEEEccCCcccC
Confidence 3344566789999999999999764 8999999994 21110000 00000000 01245799999999999
Q ss_pred eEEEEEeeeCCCCCccceEEEEEEe
Q psy7941 211 GAYQCIAANGVPPTVSKRLMLHVHC 235 (238)
Q Consensus 211 G~y~C~~~n~~g~~~~~~~~l~V~~ 235 (238)
|.|+|.|.|..|. .+.++.|.|+.
T Consensus 88 G~Y~Cevsn~~g~-~~~~~~L~V~~ 111 (126)
T 2dav_A 88 GNYRCEVTYKDKF-DSCSFDLEVHE 111 (126)
T ss_dssp EEEEEEEECSSCE-EEECCEEEEEC
T ss_pred EEEEEEEEeCCCc-EEEEEEEEEEe
Confidence 9999999999984 58889999988
No 279
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=99.51 E-value=2e-14 Score=89.51 Aligned_cols=84 Identities=17% Similarity=0.226 Sum_probs=62.6
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCC-CeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRRED-NKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP 223 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~ 223 (238)
+....+..|+.+.|.|.+.|.|.|.+.|++++ +..+... ...........|.|.++..+|+|.|+|.|.|..|
T Consensus 9 ~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~-----~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G- 82 (93)
T 1wit_A 9 SRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPE-----LLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELG- 82 (93)
T ss_dssp CCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTT-----SEEEEETTEEEEECTTBCGGGCEEEEEEEEETTE-
T ss_pred CCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCc-----EEEEecCCEEEEEECCCChhcCEEEEEEEEcCCC-
Confidence 34577899999999999999999999999954 1333210 0111112235799999999999999999999999
Q ss_pred CccceEEEEEE
Q psy7941 224 TVSKRLMLHVH 234 (238)
Q Consensus 224 ~~~~~~~l~V~ 234 (238)
..+.++.|.|+
T Consensus 83 ~~~~~~~l~V~ 93 (93)
T 1wit_A 83 EDEAIFEVIVQ 93 (93)
T ss_dssp EEEEEEEEEEC
T ss_pred eEEEEEEEEEC
Confidence 44777777763
No 280
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=99.51 E-value=2.1e-13 Score=86.53 Aligned_cols=93 Identities=17% Similarity=0.295 Sum_probs=69.3
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
.+|.|...+..+.+.+|+++.|.|.+.. .|.+.+.|++++..+..
T Consensus 7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g--------------------------~p~p~i~W~k~~~~~~~--------- 51 (103)
T 3qp3_A 7 HAPRITLRMRSHRVPCGQNTRFILNVQS--------------------------KPTAEVKWYHNGVELQE--------- 51 (103)
T ss_dssp EEEEEEECCCCEEEETTCCEEEEEEEEE--------------------------ESCCEEEEEETTEECCC---------
T ss_pred CCCEEEeCCcceEEeCCCeEEEEEEEEe--------------------------cCCCEEEEEECCEECCC---------
Confidence 4788999999999999999999999853 34678999998765422
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEc
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVI 135 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~ 135 (238)
..++.+... ....+|.|.+++.+|+|.|+|.+.|.. .....+.|.|..
T Consensus 52 ~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 100 (103)
T 3qp3_A 52 SSKIHYTNT-SGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG 100 (103)
T ss_dssp CSSEEEEEE-TTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred CCCEEEEEC-CCEEEEEEcCCCcccCEEEEEEEEeCCCcEEEEEEEEEEC
Confidence 234444332 334589999999999999999998753 344455666654
No 281
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=99.51 E-value=9e-14 Score=88.87 Aligned_cols=85 Identities=21% Similarity=0.346 Sum_probs=64.9
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeec---eEEEEEeecCCCeEEEEEeeeCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE---VLSLTKVTRSEMGAYQCIAANGV 221 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~n~~ 221 (238)
+....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+... .......++ .|.|.++..+|+|.|+|.|.|..
T Consensus 20 ~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~-~~~~~~~~------~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~ 92 (107)
T 3irg_B 20 PRPVRVVSGAEAELKCVVLGEPPPVVVWEK-GGQQLAAS------ERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAA 92 (107)
T ss_dssp CCCEEEETTSCEEEEEEEEEESCCEEEEEE-TTEECCCC------SSEECCEETTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred CccEEEeCCCeEEEEEEEeecCCCEEEEEE-CCeECCCC------CcEEEEeCCCEEEEEEccCCHHhCEEEEEEEEcCC
Confidence 345678899999999999999999999999 55444321 111112222 79999999999999999999999
Q ss_pred CCCccceEEEEEEeec
Q psy7941 222 PPTVSKRLMLHVHCTY 237 (238)
Q Consensus 222 g~~~~~~~~l~V~~~p 237 (238)
|. .+..+.|.|..+|
T Consensus 93 g~-~~~~~~l~V~~~P 107 (107)
T 3irg_B 93 GE-AYAAAAVTVLEPP 107 (107)
T ss_dssp EE-EEEEEEEEEEC--
T ss_pred Cc-EEEEEEEEEEcCC
Confidence 95 4788999998887
No 282
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=9.5e-14 Score=88.30 Aligned_cols=98 Identities=16% Similarity=0.237 Sum_probs=72.9
Q ss_pred CCCccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee
Q psy7941 3 PVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH 82 (238)
Q Consensus 3 ~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~ 82 (238)
.|...+|.|...+..+.+.+|+++.|.|.+.... +++.+.|+|++..+.
T Consensus 3 ~V~~~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~-------------------------~~~~v~W~k~g~~i~------ 51 (104)
T 2eny_A 3 SGSSGHVGITKRLKTMEVLEGESCSFECVLSHES-------------------------ASDPAMWTVGGKTVG------ 51 (104)
T ss_dssp CCCCCCCCCSBCCCCEEEESSCCEEEEEECSSCC-------------------------CSSCBCCBSSSSBCS------
T ss_pred ccccCCCEEEecCCCcEEcCCCcEEEEEEEcCCC-------------------------CCceeEEEECCEECC------
Confidence 5677788999999999999999999999985321 123699999876543
Q ss_pred EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCc
Q psy7941 83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPD 138 (238)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~ 138 (238)
...++.+... ....+|.|.+++.+|+|.|+|.+.+ ....+.|.|..+|.
T Consensus 52 ---~~~r~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~~---~~~~a~L~V~~~p~ 100 (104)
T 2eny_A 52 ---SSSRFQATRQ-GRKYILVVREAAPSDAGEVVFSVRG---LTSKASLIVRERSG 100 (104)
T ss_dssp ---BCSSCEEEEE-TTEEEEEECSCCTTTCSCEEEEETT---EEEEECEEEECCCS
T ss_pred ---CCCCEEEEEc-CCEEEEEECCCCHHHCEEEEEEECC---eeEEEEEEEeCCCc
Confidence 2335554432 2345899999999999999998844 24566788887664
No 283
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=99.51 E-value=1.9e-13 Score=86.05 Aligned_cols=94 Identities=22% Similarity=0.380 Sum_probs=67.4
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
..+|.|...+..+.+.+|+++.|.|.+.. .|.+.+.|++++..+..
T Consensus 3 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g--------------------------~p~p~v~W~k~~~~~~~-------- 48 (99)
T 1u2h_A 3 KAPPTFKVSLMDQSVREGQDVIMSIRVQG--------------------------EPKPVVSWLRNRQPVRP-------- 48 (99)
T ss_dssp CEEEEEEECCCCEEEETTCCEEEEEEEEE--------------------------ESCCEEEEEETTEECCC--------
T ss_pred CCCCEEEEcCCceEecCCCEEEEEEEEEE--------------------------cCCCEEEEEECCEECCC--------
Confidence 35788988899999999999999999863 34667999998765432
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEE
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVV 134 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~ 134 (238)
...++... ......+|.|.+++.+|+|.|+|.+.|... ....+.|.|.
T Consensus 49 ~~~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~~~~~~~l~V~ 97 (99)
T 1u2h_A 49 DQRRFAEE-AEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVR 97 (99)
T ss_dssp BTTEEEEE-CGGGEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CCCEEEEE-CCCCEEEEEEccCCcCCCEEEEEEEEECCCceeEEEEEEEE
Confidence 12233322 223345899999999999999999987633 3344455553
No 284
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=99.51 E-value=2.2e-13 Score=93.06 Aligned_cols=99 Identities=20% Similarity=0.338 Sum_probs=73.7
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
.+|.|...+..+.+..|+++.|.|.+.. .|.+.+.|+|++..+. .
T Consensus 40 ~~P~~~~~~~~~~v~~G~~v~L~C~~~g--------------------------~P~p~v~W~k~g~~~~---------~ 84 (154)
T 1fhg_A 40 VKPYFTKTILDMEVVEGSAARFDCKVEG--------------------------YPDPEVMWFKDDNPVK---------E 84 (154)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEE--------------------------ESCCEEEEEETTEECC---------C
T ss_pred CCCeEEccCCcEEEeCCCeEEEEEEEEE--------------------------ecCCEEEEEECCEECC---------C
Confidence 4788888889999999999999999853 3466799999876532 2
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCccc
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDIS 140 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~ 140 (238)
..++.+........+|.|.+++.+|+|.|+|.+.|.. .....+.|.|..+|.+.
T Consensus 85 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~~ 139 (154)
T 1fhg_A 85 SRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEG 139 (154)
T ss_dssp SSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC----
T ss_pred CCcEEEEECCCCeEEEEECCCChhcCEEEEEEEEECCCeEEEEEEEEEeCcCcCC
Confidence 4455555444455699999999999999999998763 34556678888776554
No 285
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=99.51 E-value=1.7e-13 Score=85.31 Aligned_cols=79 Identities=16% Similarity=0.236 Sum_probs=60.0
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--ceeeeeeeeeEee
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKAVLAIHEHVIT 85 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~~~~~~~~~~~ 85 (238)
+|.|..++..+.+.+|+++.|.|.+. +.|.|.+.|++++ ..+..
T Consensus 2 ~P~i~~~~~~~~v~~G~~~~l~C~~~--------------------------g~P~p~i~W~k~~~~~~~~~-------- 47 (93)
T 1wit_A 2 KPKILTASRKIKIKAGFTHNLEVDFI--------------------------GAPDPTATWTVGDSGAALAP-------- 47 (93)
T ss_dssp CCEECCCCCEEEECTTBCCEEEEEEE--------------------------CCSSCEEEEECSTTTCBCST--------
T ss_pred CCeEEcCCCceEEeCCCEEEEEEEEE--------------------------EcCCCEEEEEECCCCcccCC--------
Confidence 68888888999999999999999995 4567889999987 43211
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
..++. . .....+|.|.+++.+|+|.|+|.+.|...
T Consensus 48 -~~~~~--~-~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G 82 (93)
T 1wit_A 48 -ELLVD--A-KSSTTSIFFPSAKRADSGNYKLKVKNELG 82 (93)
T ss_dssp -TSEEE--E-ETTEEEEECTTBCGGGCEEEEEEEEETTE
T ss_pred -cEEEE--e-cCCEEEEEECCCChhcCEEEEEEEEcCCC
Confidence 11111 1 12234899999999999999999988643
No 286
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=99.50 E-value=2.2e-13 Score=87.23 Aligned_cols=88 Identities=20% Similarity=0.263 Sum_probs=62.8
Q ss_pred ccCCceeecCCCcEEEEEEEccccC---CeEEEEeCCCeeeEeecCCCCCcceE--------EEeeceEEEEEeecCCCe
Q psy7941 143 ETSGDMMVPEGGSAKLVCKAKGYPT---PKITWRREDNKEIIVRSNPPSSQKVF--------SVESEVLSLTKVTRSEMG 211 (238)
Q Consensus 143 ~~~~~~~~~~g~~~~l~C~~~~~p~---~~~~W~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~i~~~~~~d~G 211 (238)
..+..+.+..|+.+.|.|.+.|.|. |.+.|++++..... . ........ ......|.|.++..+|+|
T Consensus 9 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G 85 (108)
T 3cx2_A 9 MRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLS--S-KVGQHLQLHDSYDRASKVYLFELHITDAQPAFTG 85 (108)
T ss_dssp BCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGG--G-GCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCE
T ss_pred eCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCccccc--c-cCCceEEEeeEEecccccceEEEEEecCCCccCE
Confidence 3456678999999999999999988 99999994421110 0 00000000 012457999999999999
Q ss_pred EEEEEeeeCCCCCccceEEEEEE
Q psy7941 212 AYQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 212 ~y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
.|+|.|.|..|. .+.++.|.|.
T Consensus 86 ~Y~C~a~N~~G~-~~~~~~L~V~ 107 (108)
T 3cx2_A 86 SYRCEVSTKDKF-DCSNFNLTVH 107 (108)
T ss_dssp EEEEEEECSSCE-EEEEEEEEEE
T ss_pred EEEEEEecCCCc-eEEEEEEEEe
Confidence 999999999994 4888888875
No 287
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=99.50 E-value=6.4e-13 Score=104.10 Aligned_cols=173 Identities=14% Similarity=0.180 Sum_probs=108.2
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
.+|.|...+..+.+.+|+++.|.|.+.. .|.+.+.|++++..+... .
T Consensus 99 ~~P~~~~~~~~~~~~~g~~~~l~C~~~g--------------------------~p~~~i~W~~~g~~l~~~-------~ 145 (389)
T 2jll_A 99 YAPKFISNQTIYYSWEGNPINISCDVKS--------------------------NPPASIHWRRDKLVLPAK-------N 145 (389)
T ss_dssp EEEEECCSCCEEEECTTCCEEEEECEEE--------------------------ESCCEEEEEETTEESSCT-------T
T ss_pred eCCEEecCcceEEeccCCEEEEEEEEEe--------------------------cCCCeEEEEECCccCCcc-------c
Confidence 3567766666667889999999999853 346789999987654221 1
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEc--
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK-- 163 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-- 163 (238)
..++.+.. .....+|.|.+++.+|+|.|+|.+.|... ......+.+...|..... .......+..+.|.|...
T Consensus 146 ~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~---~~~~~~~~~~~~l~w~~p~~ 221 (389)
T 2jll_A 146 TTNLKTYS-TGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYG---VKIIELSQTTAKVSFNKPDS 221 (389)
T ss_dssp CTTEEEEE-CSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEE---EEEEEECSSCEEEEEECCSC
T ss_pred CceEEEec-cCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcc---eEEeeccCCEEEEEEeCCCC
Confidence 12343332 22344899999999999999999987643 333444555444432211 111223356788888742
Q ss_pred --cccCC--eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 164 --GYPTP--KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 164 --~~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
+.|.. .+.|...+........ .......+.|..+...+.+.|+|.|.|..|..
T Consensus 222 ~~g~pi~~y~v~~~~~~~~~~~~~~--------~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~ 278 (389)
T 2jll_A 222 HGGVPIHHYQVDVKEVASEIWKIVR--------SHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQG 278 (389)
T ss_dssp CTTSCEEEEEEEEEETTCSCCEEEE--------CSTTCSEEEECSCCTTCEEEEEEEEEESSCBC
T ss_pred CCCcceEEEEEEEEECCCcccEEee--------ccCCcceEEECCccCCCEEEEEEEEEcCCccC
Confidence 22332 5678774332111000 01122468889999999999999999999853
No 288
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=2.4e-13 Score=86.26 Aligned_cols=96 Identities=24% Similarity=0.359 Sum_probs=72.4
Q ss_pred CCccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE
Q psy7941 4 VRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV 83 (238)
Q Consensus 4 ~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~ 83 (238)
..+.+|.|...+..+.+.+|+++.|.|.+.+ |.+.+.|+|++..+.
T Consensus 4 ~~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~---------------------------~~~~v~W~k~g~~~~------- 49 (103)
T 2edf_A 4 GSSGPAAIIKPLEDQWVAPGEDVELRCELSR---------------------------AGTPVHWLKDRKAIR------- 49 (103)
T ss_dssp SCCCCCCEEECCCCEEECTTSCEEECCEESS---------------------------SSCCCCEEESSCBCC-------
T ss_pred CCCCCcEEEecCCccEEcCCCCEEEEEEEeC---------------------------CCCcEEEEECCEEcc-------
Confidence 3457889999999999999999999999863 245699999876542
Q ss_pred eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcc
Q psy7941 84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDI 139 (238)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~ 139 (238)
...++.+.... ....|.|.+++.+|+|.|+|.+.| ....+.|.|..+|..
T Consensus 50 --~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n---~~~~~~l~V~~~p~~ 99 (103)
T 2edf_A 50 --KSQKYDVVCEG-TMAMLVIRGASLKDAGEYTCEVEA---SKSTASLHVEEKASG 99 (103)
T ss_dssp --CSSSEEEEEET-TEEEEEESSCCTTTCSEEEEECSS---CEEEEEEEECCCSSS
T ss_pred --CCCCEEEEECC-CEEEEEECCCCcccCEEEEEEEcc---CCcEEEEEEeCCCCC
Confidence 23355544432 245899999999999999999977 355667777766643
No 289
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=99.50 E-value=1.6e-13 Score=87.70 Aligned_cols=97 Identities=26% Similarity=0.419 Sum_probs=69.7
Q ss_pred CccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe
Q psy7941 5 RGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI 84 (238)
Q Consensus 5 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~ 84 (238)
...+|.|...+..+.+.+|+++.|.|.+.. .|.+.+.|++++..+.
T Consensus 10 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g--------------------------~p~p~i~W~~~~~~~~-------- 55 (107)
T 3irg_B 10 QGSPPCFLRFPRPVRVVSGAEAELKCVVLG--------------------------EPPPVVVWEKGGQQLA-------- 55 (107)
T ss_dssp CCEEEEEEECCCCEEEETTSCEEEEEEEEE--------------------------ESCCEEEEEETTEECC--------
T ss_pred CCCCCeeEcCCccEEEeCCCeEEEEEEEee--------------------------cCCCEEEEEECCeECC--------
Confidence 356889999999999999999999999853 3456799999765532
Q ss_pred ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCC
Q psy7941 85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPP 137 (238)
Q Consensus 85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~ 137 (238)
...++.+... ....+|.|.+++.+|+|.|+|.+.|.. .....+.|.|..+|
T Consensus 56 -~~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~P 107 (107)
T 3irg_B 56 -ASERLSFPAD-GAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107 (107)
T ss_dssp -CCSSEECCEE-TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC--
T ss_pred -CCCcEEEEeC-CCEEEEEEccCCHHhCEEEEEEEEcCCCcEEEEEEEEEEcCC
Confidence 1234433322 234489999999999999999998753 33445566666543
No 290
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}
Probab=99.50 E-value=4.8e-13 Score=86.36 Aligned_cols=97 Identities=26% Similarity=0.430 Sum_probs=72.4
Q ss_pred cCCCccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee
Q psy7941 2 VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE 81 (238)
Q Consensus 2 ~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~ 81 (238)
|.|...+|.|...+..+.+.+|+++.|.|.+.. .+.+.|+|++..+.
T Consensus 13 l~V~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~----------------------------~p~v~W~k~~~~l~----- 59 (113)
T 2edh_A 13 LTVRALPIKFTEGLRNEEATEGATAVLRCELSK----------------------------MAPVEWWKGHETLR----- 59 (113)
T ss_dssp CCCCCSCCCEEECCCCCEECTTSCEEEEEEESS----------------------------CCCCEEEESSSBCC-----
T ss_pred EEEEcCCCcccccCCceEEeCCCeEEEEEEECC----------------------------CCcEEEEECCEECC-----
Confidence 456667789998999999999999999999853 13599999876542
Q ss_pred eEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcc
Q psy7941 82 HVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDI 139 (238)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~ 139 (238)
...++.+... .....|.|.+++.+|+|.|+|.+ +.....+.|.|..+|..
T Consensus 60 ----~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a---~~~~~~~~l~V~~~p~~ 109 (113)
T 2edh_A 60 ----DGDRHSLRQD-GARCELQIRGLVAEDAGEYLCMC---GKERTSAMLTVRAMPSG 109 (113)
T ss_dssp ----CSSSEEEEEE-TTEEEEEECSCCSTTCEEEEEEE---TTEEEEEEEEECCCCCS
T ss_pred ----CCCcEEEEEC-CCEEEEEECCCChhhCEEEEEEe---CCCCEEEEEEEeCCCCC
Confidence 2345555443 23458999999999999999999 33455667777765543
No 291
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=7.9e-14 Score=90.84 Aligned_cols=86 Identities=24% Similarity=0.414 Sum_probs=67.4
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
+....+..|+.+.|.|.+.|.|.+.+.|++ ++..+.. .........++.|.|.++..+|+|.|+|.|.|..|.
T Consensus 15 p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k-~g~~~~~-----~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~- 87 (118)
T 2eo9_A 15 PVNQTVAVDGTFVLSCVATGSPVPTILWRK-DGVLVST-----QDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGE- 87 (118)
T ss_dssp CCCEEEETTCEEEEECBCCCSSCCEEEEEE-SSSBCCT-----TSTTEEEEETTEEEEESCCGGGCCCEEEEEECSSCE-
T ss_pred CCCEEEcCCCeEEEEEEEEecCCCEEEEEE-CCEECcC-----CCCeEEEccCCEEEEccCCcCCCEEEEEEEEcCCCc-
Confidence 455778899999999999999999999999 4444321 112333445668999999999999999999999995
Q ss_pred ccceEEEEEEeec
Q psy7941 225 VSKRLMLHVHCTY 237 (238)
Q Consensus 225 ~~~~~~l~V~~~p 237 (238)
....+.|.|..+|
T Consensus 88 ~~~~~~l~V~~~~ 100 (118)
T 2eo9_A 88 ATWSAYIEVQEFG 100 (118)
T ss_dssp EEEECCEEEECCS
T ss_pred EEEEEEEEEEeCC
Confidence 4677778887654
No 292
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}
Probab=99.49 E-value=2.4e-12 Score=93.25 Aligned_cols=163 Identities=15% Similarity=0.204 Sum_probs=105.2
Q ss_pred eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCC---CceEEEEeCCceeeeeeeeeEeecCc
Q psy7941 12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSS---AMKVAWIKADTKAVLAIHEHVITNNA 88 (238)
Q Consensus 12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~W~~~~~~~~~~~~~~~~~~~~ 88 (238)
...|....+..|+.++|+|.+.+- .| +..++|+|++.... .
T Consensus 6 s~~P~~~~i~~GdsVTLTatVaGG-------------------------kP~pspyTYqWyKDG~~Is---------G-- 49 (304)
T 3shs_A 6 SIQSNKRCFLAGDGFTLTATVAGD-------------------------EPLPSNLTYTWTKDDQPHE---------N-- 49 (304)
T ss_dssp EEEESCSSBCTTCCEEEEEEEEES-------------------------SSCCCCEEEEEEETTEECS---------C--
T ss_pred EeCCCCccccCCCCEEEEEEecCC-------------------------CCCCCCceEEEEECCcccc---------C--
Confidence 344555567799999999998642 23 33699999875421 0
Q ss_pred cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcc-eeeEEEEEcCCccc-ccccCCceeecCCCcEEEEEEE--cc
Q psy7941 89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK-QMAFLEVVIPPDIS-SEETSGDMMVPEGGSAKLVCKA--KG 164 (238)
Q Consensus 89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v~~~~~~~-~~~~~~~~~~~~g~~~~l~C~~--~~ 164 (238)
....|.+..+...|+|.|+|.+.+..... ....+.|...+.+. ....+....+..+..+.|.+.+ .|
T Consensus 50 ---------aT~tLti~s~t~sdSG~YqCvVTDa~Gcs~tSs~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SG 120 (304)
T 3shs_A 50 ---------NTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSG 120 (304)
T ss_dssp ---------CSSEEEESSCCGGGCEEEEEEEEETTTCCEEECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETT
T ss_pred ---------CcceEEeeeccccCCeEEEEEEEECCCCeeeeeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccC
Confidence 11188999999999999999997653322 22234444333221 1222444556677889999887 54
Q ss_pred -cc-----CCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC-CCccceEEEEEE
Q psy7941 165 -YP-----TPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP-PTVSKRLMLHVH 234 (238)
Q Consensus 165 -~p-----~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g-~~~~~~~~l~V~ 234 (238)
.| ..+++|++ ++..+. ....+.+......+.|.|+|.+.|..+ ...+.++.+.+.
T Consensus 121 GtppA~~~~yTYQWyK-ngt~Is--------------gAq~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~ 182 (304)
T 3shs_A 121 GKTPADNYELHYSWSK-GEDVID--------------TTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLA 182 (304)
T ss_dssp SCCSSTTCCCEEEEEE-TTEEEE--------------SSSEEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEEC
T ss_pred CCCcccCCCceeEEee-CCeEcc--------------CccccceeeEEecCCeEEEEEEEcCCCCcccccceEEEEE
Confidence 44 45999999 443332 122456666777899999999999876 455666655553
No 293
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.49 E-value=4.5e-14 Score=105.97 Aligned_cols=169 Identities=10% Similarity=0.152 Sum_probs=48.4
Q ss_pred eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCC
Q psy7941 18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDA 97 (238)
Q Consensus 18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (238)
..+.+|+.++|+|.+.+..+.. ...|.|||++..+.... .. .. .
T Consensus 96 ~~~~~G~~~~LtC~v~g~~P~~-----------------------~l~itW~kg~~~l~~~~----~~-~~--------~ 139 (291)
T 1mq8_A 96 SWQPVGKNLTLRCQVEGGAPRA-----------------------NLTVVLLRGEKELKREP----AV-GE--------P 139 (291)
T ss_dssp SBCCSSCCCEEEEEECCCBSTT-----------------------TEEEEEESSSSEEEEEE----CC-BT--------T
T ss_pred ccccCCCCEEEEEEecCccCCC-----------------------CcEEEEEECCEEeeccc----CC-CC--------C
Confidence 4477899999999997532211 12589999876543221 00 01 1
Q ss_pred CeEEEEEcccCcccCeEEEEEEecCCC---------cceeeEEEEEcCCcc-cccccCCceeecCCCcEEEEEEEccccC
Q psy7941 98 NTWTLNIRSVRREDRGYYMCQVNTNPM---------TKQMAFLEVVIPPDI-SSEETSGDMMVPEGGSAKLVCKAKGYPT 167 (238)
Q Consensus 98 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~---------~~~~~~l~v~~~~~~-~~~~~~~~~~~~~g~~~~l~C~~~~~p~ 167 (238)
...+|.+......|.+.|+|++.+... .+....|+|+++|.. .....+ ..+.+|+.+.|.|.+.|.|+
T Consensus 140 ~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p--~~l~eG~~v~l~C~~~g~~P 217 (291)
T 1mq8_A 140 AEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSP--RVLEVDTQGTVVCSLDGLFP 217 (291)
T ss_dssp EEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC-----------------------------------
T ss_pred ceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCC--cCccCCCeEEEEEEcCCCCC
Confidence 122666666666666799999976411 234456777776532 111112 25788999999999999654
Q ss_pred C---eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEe---ecCC--CeEEEEEeeeCCCCCccceEEEEEEe
Q psy7941 168 P---KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKV---TRSE--MGAYQCIAANGVPPTVSKRLMLHVHC 235 (238)
Q Consensus 168 ~---~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~~d--~G~y~C~~~n~~g~~~~~~~~l~V~~ 235 (238)
+ .++|.+ ++..+.... ...+..+.+... ..++ .+.|+|.+.+... .......|.|+.
T Consensus 218 ~~~~~v~w~~-~g~~l~~~~---------~~~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~-~~~~~~~l~v~~ 282 (291)
T 1mq8_A 218 VSEAQVHLAL-GDQRLNPTV---------TYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQ-SQETLQTVTIYS 282 (291)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CcccEEEEEE-CCEecCcee---------eecCCeEEEEEecceeEcCCCCEEEEEEEEeCCc-ceEEEEEEEEEc
Confidence 4 699998 554443211 111122222222 3433 5577788887443 234555667765
No 294
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=99.49 E-value=1.2e-13 Score=87.59 Aligned_cols=85 Identities=18% Similarity=0.296 Sum_probs=64.6
Q ss_pred CceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEE--eeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941 146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV--ESEVLSLTKVTRSEMGAYQCIAANGVPP 223 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~~g~ 223 (238)
....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.... ...... ....|.|.++..+|+|.|+|.|.|..|.
T Consensus 16 ~~~~v~~G~~v~l~C~~~g~p~p~i~W~k-~~~~~~~~~-----~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~ 89 (103)
T 3qp3_A 16 RSHRVPCGQNTRFILNVQSKPTAEVKWYH-NGVELQESS-----KIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGE 89 (103)
T ss_dssp CCEEEETTCCEEEEEEEEEESCCEEEEEE-TTEECCCCS-----SEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred cceEEeCCCeEEEEEEEEecCCCEEEEEE-CCEECCCCC-----CEEEEECCCEEEEEEcCCCcccCEEEEEEEEeCCCc
Confidence 45678899999999999999999999999 554443211 111111 1236999999999999999999999994
Q ss_pred CccceEEEEEEeec
Q psy7941 224 TVSKRLMLHVHCTY 237 (238)
Q Consensus 224 ~~~~~~~l~V~~~p 237 (238)
. +..+.|.|...+
T Consensus 90 ~-~~~~~l~V~~~~ 102 (103)
T 3qp3_A 90 A-SDYATLDVTGGD 102 (103)
T ss_dssp E-EEEEEEEEECC-
T ss_pred E-EEEEEEEEECCC
Confidence 4 888888887654
No 295
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.1e-13 Score=87.57 Aligned_cols=99 Identities=22% Similarity=0.211 Sum_probs=70.1
Q ss_pred CCCccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee
Q psy7941 3 PVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH 82 (238)
Q Consensus 3 ~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~ 82 (238)
.+...+|.|...+..+.+.+|+++.|.|.+.. .| +.+.|+|++..+......
T Consensus 3 sv~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~--------------------------~~-~~v~W~k~g~~i~~~~~~- 54 (101)
T 2edk_A 3 SGSSGPVLIVTPLEDQQVFVGDRVEMAVEVSE--------------------------EG-AQVMWMKNGVELTREDSF- 54 (101)
T ss_dssp SSCCCCCCEEECCCCEEEESSCCCBCCEEESC--------------------------SS-CCCEEEESSCBCCCSCCS-
T ss_pred ccccCCCEEEecCCceEEcCCCCEEEEEEEeC--------------------------CC-CEEEEEECCEECCCCCCc-
Confidence 35677899999999999999999999999853 23 569999987654321100
Q ss_pred EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCC
Q psy7941 83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPP 137 (238)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~ 137 (238)
..++.+.. ......|.|.+++.+|+|.|+|.+.+ ....+.|.|..+|
T Consensus 55 ----~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~n---~~~~~~l~V~~~P 101 (101)
T 2edk_A 55 ----KARYRFKK-DGKRHILIFSDVVQEDRGRYQVITNG---GQCEAELIVEEKQ 101 (101)
T ss_dssp ----SCCCEEEE-CSSEEEEECSSCCGGGCSBEEEECSS---CEECCBEEEECCC
T ss_pred ----ceeEEEEE-CCCEEEEEECCCChhhCEEEEEEEcC---CcEEEEEEEeCCC
Confidence 00444443 23345899999999999999999875 2344556666543
No 296
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2.3e-13 Score=87.75 Aligned_cols=103 Identities=24% Similarity=0.311 Sum_probs=69.6
Q ss_pred CCccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE
Q psy7941 4 VRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV 83 (238)
Q Consensus 4 ~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~ 83 (238)
+.+..+.|+..|+++.+.+|+++.|.|.+....+ .|.|.|.|||+. .......
T Consensus 8 ~~~~~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~-----------------------~p~P~V~W~Kgk-~~~~~~~--- 60 (118)
T 2edn_A 8 AEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKEL-----------------------PDKPTIKWFKGK-WLELGSK--- 60 (118)
T ss_dssp CCCCSSSCSBCCCCCEEETTSCEECCEEEETTTS-----------------------SSCCCCEEEETT-TCCCCCS---
T ss_pred ccCCcceEEECCCCeEEeCCCCEEEEEEEeccCC-----------------------CCCCcEEEeeCC-EeccCCC---
Confidence 4456778999999999999999999999974321 247789999963 1111000
Q ss_pred eecCccEEEEEc-----CCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEc
Q psy7941 84 ITNNARLSVTHN-----DANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVI 135 (238)
Q Consensus 84 ~~~~~~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~ 135 (238)
...++.+... ....++|+|.+++.+|+|.|+|++.+... .+..+.|+|..
T Consensus 61 --~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~Cevsn~~g~~s~~~~L~V~~ 116 (118)
T 2edn_A 61 --SGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEA 116 (118)
T ss_dssp --TTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEEEEEECSSCEEEEEECCEEEC
T ss_pred --CccEEEeccccccccccceEEEEEeeCChhhCEEEEEEEEEcCCcEEEEEEEEEEc
Confidence 0122222111 01245999999999999999999987643 44556677765
No 297
>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Probab=99.48 E-value=1e-13 Score=90.23 Aligned_cols=82 Identities=21% Similarity=0.227 Sum_probs=61.2
Q ss_pred CCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceE------EEeeceEEEEEeecCCCeEEEEEeeeCCCCCc
Q psy7941 152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVF------SVESEVLSLTKVTRSEMGAYQCIAANGVPPTV 225 (238)
Q Consensus 152 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~ 225 (238)
.+..+.|.|.+.|.|.|.++|++ ++..+..... ...... ....+.|.|.++...|+|.|+|.|.|..|. .
T Consensus 14 ~~~~~~l~c~v~G~P~P~I~W~k-nG~~l~~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~-~ 89 (126)
T 1he7_A 14 EMHHWCIPFSVDGQPAPSLRWLF-NGSVLNETSF--IFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ-A 89 (126)
T ss_dssp CCCEEEEEEEECCSSCCEEEEEE-TTEECCCCSS--EEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEE-E
T ss_pred cCccEEEEEEEeeeCCCeEEEEE-CCEECCCCCc--eeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCe-E
Confidence 56789999999999999999999 6665543211 000000 012357999999999999999999999995 4
Q ss_pred cceEEEEEEeec
Q psy7941 226 SKRLMLHVHCTY 237 (238)
Q Consensus 226 ~~~~~l~V~~~p 237 (238)
..++.|.|...|
T Consensus 90 ~~t~~l~v~~~P 101 (126)
T 1he7_A 90 SASIMAAFMDNP 101 (126)
T ss_dssp EEEEEECCCSCT
T ss_pred EEEEEEEEEcCC
Confidence 788888887766
No 298
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.48 E-value=1.3e-12 Score=85.16 Aligned_cols=99 Identities=20% Similarity=0.224 Sum_probs=68.2
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN 87 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 87 (238)
.|.|...|+.+.+.+|++++|.|.+....+ .|.|.|.|||+. ....... ..
T Consensus 7 ~~~F~~~P~~v~V~eG~~v~L~C~v~g~~~-----------------------~p~P~V~W~Kgk-~~~~~~~-----~~ 57 (126)
T 2dav_A 7 GILFIEKPQGGTVKVGEDITFIAKVKAEDL-----------------------LRKPTIKWFKGK-WMDLASK-----AG 57 (126)
T ss_dssp SCSCCSCCCCCEEETTCCEEEEEEEECCCS-----------------------SSCCEEEEEESS-SCCHHHH-----TT
T ss_pred ccEEEEcCCCeEEeCCCCEEEEEEEeccCC-----------------------CCCCcEEEeeCc-CcccCCC-----CC
Confidence 577999999999999999999999964222 247889999963 1110000 01
Q ss_pred ccEEEEEc-----CCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEc
Q psy7941 88 ARLSVTHN-----DANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVI 135 (238)
Q Consensus 88 ~~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~ 135 (238)
.++.+... ....+.|+|.+++.+|+|.|+|++.+. +.....+.|+|..
T Consensus 58 ~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~Cevsn~~g~~~~~~~L~V~~ 111 (126)
T 2dav_A 58 KHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHE 111 (126)
T ss_dssp SSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEECSSCEEEECCEEEEEC
T ss_pred ceEEEccccccccccceEEEEEccCCcccCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence 12222110 112459999999999999999999876 3345677888887
No 299
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}
Probab=99.48 E-value=2.6e-13 Score=86.74 Aligned_cols=91 Identities=20% Similarity=0.392 Sum_probs=66.7
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecC-CCCCcceEEE----eeceEEEEEeecCCCeEEEEEeee
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN-PPSSQKVFSV----ESEVLSLTKVTRSEMGAYQCIAAN 219 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~~~n 219 (238)
+..+.+.+|+.+.|.|.+.+.|.+.+.|++++...+..... .......... ....|.|.++..+|+|.|+|.+.|
T Consensus 13 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n 92 (108)
T 3m45_A 13 TQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFT 92 (108)
T ss_dssp CCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGCEEEEEEECS
T ss_pred CCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHCeEEEEEEEc
Confidence 45678899999999999999999999999955423222111 0011122211 345799999999999999999999
Q ss_pred CCCCCccceEEEEEEeec
Q psy7941 220 GVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 220 ~~g~~~~~~~~l~V~~~p 237 (238)
.| ..+..+.|.|..+|
T Consensus 93 -~~-~~~~~~~L~V~~~P 108 (108)
T 3m45_A 93 -MP-VKTSKAYLTVLGVP 108 (108)
T ss_dssp -SS-CEEEEEEEEEECCC
T ss_pred -CC-CcEEEEEEEEEcCC
Confidence 66 55888899998887
No 300
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=99.48 E-value=2.2e-13 Score=87.14 Aligned_cols=94 Identities=26% Similarity=0.444 Sum_probs=63.2
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
.+|.|...+..+.+.+|+++.|.|.+. +.|.+.+.|++++..+..
T Consensus 9 ~~P~~~~~~~~~~v~~G~~v~l~C~~~--------------------------g~p~p~i~W~~~~~~~~~--------- 53 (108)
T 3kvq_A 9 VAPTITGNLENQTTSIGESIEVSCTAS--------------------------GNPPPQIMWFKDNETLVE--------- 53 (108)
T ss_dssp --CCCBSCCCCEEEETTCCEEEECBCC------------------------------CCEEEEESSSBCCC---------
T ss_pred CCCceecCCCCeEEeCCCeEEEEEECc--------------------------CcCCCeEEEEECCeEccc---------
Confidence 478888899999999999999999984 234667999998765432
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCc
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPD 138 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~ 138 (238)
..++.... ...+|.|.+++.+|+|.|+|.+.|. +.....+.|.|..++.
T Consensus 54 ~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~ 103 (108)
T 3kvq_A 54 DSGIVLKD---GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQE 103 (108)
T ss_dssp BTTEEEET---TTTEEEECSCCGGGCEEEEEEEC----CEEEEEEEEEEC---
T ss_pred CCCeEEeC---CCcEEEEeecCcccCEEEEEEEEeCCCceEEEEEEEEeCCCc
Confidence 22222221 1238999999999999999999775 4445566777776554
No 301
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=99.48 E-value=5.8e-13 Score=83.76 Aligned_cols=93 Identities=16% Similarity=0.324 Sum_probs=68.7
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
..+|.|...+..+.+.+|+++.|.|.+.. .|.+.+.|++++..+.
T Consensus 4 ~~~P~i~~~~~~~~v~~G~~~~l~C~~~g--------------------------~p~p~v~W~~~g~~~~--------- 48 (99)
T 3puc_A 4 SSKPVIVTGLQDTTVSSDSVAKFAVKATG--------------------------EPRPTAIWTKDGKAIT--------- 48 (99)
T ss_dssp CEEEEEEECCCCEEEESSSCEEEEEEEEE--------------------------ESCCEEEEEETTEECC---------
T ss_pred CCCCEEEecCccEEEeCCCcEEEEEEEEe--------------------------cCCCEEEEEECCEECc---------
Confidence 35788999999999999999999999863 3456799999765532
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEE
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVV 134 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~ 134 (238)
...++.+... ....+|.|.+++.+|+|.|+|.+.|.. .....+.|.|.
T Consensus 49 ~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 97 (99)
T 3puc_A 49 QGGKYKLSED-KGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97 (99)
T ss_dssp SSSSEEEEEE-TTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CCCCEEEEEe-CCEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEEEEE
Confidence 2345555432 344589999999999999999998753 33444455554
No 302
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A
Probab=99.48 E-value=6.9e-13 Score=94.71 Aligned_cols=129 Identities=18% Similarity=0.279 Sum_probs=82.0
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e---eeeeee-eeEee
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K---AVLAIH-EHVIT 85 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~---~~~~~~-~~~~~ 85 (238)
+...+..+.+.+|++++|.|.+.... ...+.||+... . .+.... .....
T Consensus 3 v~q~p~~v~v~~G~~v~L~C~~s~~~--------------------------~~~v~W~rq~~g~~~~~l~~~~~~~~~~ 56 (203)
T 2bnu_A 3 VTQIPAALSVPEGENLVLNCSFTDSA--------------------------IYNLQWFRQDPGKGLTSLLLIQSSQREQ 56 (203)
T ss_dssp EEEECSEEEEETTCCEEEEEEESCCC--------------------------EEEEEEEEECTTSCEEEEEEEETTCSEE
T ss_pred cEEcCCEEEEeCCCCEEEEEEECCCC--------------------------cceEEEEEeCCCCCcEEEEEECCCCccc
Confidence 34567889999999999999986432 12599998642 1 111111 11112
Q ss_pred cCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCC---C---cceeeEEEEEcCC---cccccccCCceeecCCCc
Q psy7941 86 NNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNP---M---TKQMAFLEVVIPP---DISSEETSGDMMVPEGGS 155 (238)
Q Consensus 86 ~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~---~~~~~~l~v~~~~---~~~~~~~~~~~~~~~g~~ 155 (238)
..+|+.+.. .....++|.|.+++.+|+|.|+|.+.+.. . ....+.|.|.... .+.+... ......
T Consensus 57 ~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~P~V~~~-----~~~~~~ 131 (203)
T 2bnu_A 57 TSGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVRPTSGGSYIPTFGRGTSLIVHPYIQNPDPAVYQL-----RRSKSS 131 (203)
T ss_dssp EETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEEECSSSTTCCEECCCEEEEEECCCSSCCCEEEEE-----CCSSSS
T ss_pred cCCCeEEEEcCCCCEEEEEEeeCCcccCeEEEEEEEcCcCcceeeeeCCCEEEEEeCCCCCCCCeEEec-----CCCCCC
Confidence 356888764 34567899999999999999999996531 1 1123567776432 1111100 011247
Q ss_pred EEEEEEEcc-ccCCeE
Q psy7941 156 AKLVCKAKG-YPTPKI 170 (238)
Q Consensus 156 ~~l~C~~~~-~p~~~~ 170 (238)
+.|.|.+.| +|.|.+
T Consensus 132 ~~L~C~~~g~~P~p~v 147 (203)
T 2bnu_A 132 DKSVCLFTDFDSQTNV 147 (203)
T ss_dssp SCEEEEEESCCTTCCC
T ss_pred cEEEEEccccccCccc
Confidence 899999988 898877
No 303
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=99.47 E-value=2.9e-13 Score=85.18 Aligned_cols=85 Identities=20% Similarity=0.239 Sum_probs=63.3
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceE--EEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVF--SVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
+....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.... ..... ......|.|.++..+|+|.|+|.|.|..|
T Consensus 12 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k-~g~~~~~~~----~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g 86 (99)
T 1g1c_A 12 IQSQTVGQGSDAHFRVRVVGKPDPECEWYK-NGVKIERSD----RIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAG 86 (99)
T ss_dssp CCCEEEETTSCEEEEEEEEEESCCEEEEEE-TTEECCCCS----SEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred CcceEEcCCCcEEEEEEEEEeCCCEEEEEE-CCEECCCCC----CEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEECCC
Confidence 345678899999999999999999999999 554443211 01111 11223799999999999999999999999
Q ss_pred CCccceEEEEEEe
Q psy7941 223 PTVSKRLMLHVHC 235 (238)
Q Consensus 223 ~~~~~~~~l~V~~ 235 (238)
.. ..++.|.|..
T Consensus 87 ~~-~~~~~l~V~~ 98 (99)
T 1g1c_A 87 ET-SSHAFLLVQA 98 (99)
T ss_dssp EE-EEEEEEEEEC
T ss_pred cE-EEEEEEEEec
Confidence 44 6777888764
No 304
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=85.81 Aligned_cols=78 Identities=19% Similarity=0.319 Sum_probs=61.8
Q ss_pred CceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCc
Q psy7941 146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTV 225 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~ 225 (238)
....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.. .....|.|.++..+|+|.|+|.|.|..|...
T Consensus 11 ~~~~v~~G~~~~l~C~~~g~p~p~i~W~~-~~~~~~~------------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~ 77 (91)
T 3bfo_A 11 TSQKLMPGSTLVLQCVAVGSPIPHYQWFK-NELPLTH------------ETKKLYMVPYVDLEHQGTYWCHVYNDRDSQD 77 (91)
T ss_dssp CCEEECTTSCEEEECEEECSSCCEEEEEE-TTEECTT------------CCSSEEEESSCCGGGCEEEEEEEECSSCEEE
T ss_pred CccEecCCCcEEEEEEeccCCCCEEEEEc-CCeeCCc------------CCCCeEEECCCCHHhCEEEEEEEEcCCCCEE
Confidence 34568899999999999999999999999 5443321 1234799999999999999999999999665
Q ss_pred cceEEEEEEee
Q psy7941 226 SKRLMLHVHCT 236 (238)
Q Consensus 226 ~~~~~l~V~~~ 236 (238)
++.+.|.|...
T Consensus 78 s~~~~l~V~~~ 88 (91)
T 3bfo_A 78 SKKVEIIIDEL 88 (91)
T ss_dssp CCCEEEEEC--
T ss_pred eeeEEEEEehh
Confidence 67888887653
No 305
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}
Probab=99.47 E-value=1.3e-12 Score=110.54 Aligned_cols=154 Identities=14% Similarity=0.149 Sum_probs=93.3
Q ss_pred cCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEccc-CcccCeEEEEEEecCCCcceeeEEEEE---
Q psy7941 59 TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSV-RREDRGYYMCQVNTNPMTKQMAFLEVV--- 134 (238)
Q Consensus 59 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~~~~~~~~~~~~~l~v~--- 134 (238)
.+.|.+.+.|.+++........ . .+.|..+ ....++.|.|.+.+.........+.+.
T Consensus 101 ~g~P~p~i~W~k~g~~~~~~~~-------~------------~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~ 161 (731)
T 2v5y_A 101 NNGPLGNPIWNISGDPTRTWNR-------A------------ELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHP 161 (731)
T ss_dssp TTCCCCSEEEEECCCCCSSCEE-------E------------EEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSC
T ss_pred CCCCccceeEEEeCCcCCceeE-------E------------EEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeecc
Confidence 4678899999998765321110 0 3333333 122235566644332221111112222
Q ss_pred --cCCcccccccCCceeecCCCcEEEEEEEccccCCeEE-EEe-CCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCC
Q psy7941 135 --IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKIT-WRR-EDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEM 210 (238)
Q Consensus 135 --~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~-W~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 210 (238)
.+|.+. .+....+..|+.+.|.|.+.|.|.|.+. |++ .++..+.......... ....+.|.|.++...|.
T Consensus 162 ~~~~p~~~---~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~---~~~~~~l~I~~~~~~d~ 235 (731)
T 2v5y_A 162 CTRTPHFL---RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSS---RRFIASFNVVNTTKRDA 235 (731)
T ss_dssp CSSSCEEC---CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCS---SEEEEEEEECSCCTTTC
T ss_pred cccccccc---cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEecc---ccceEEEEEcccccccC
Confidence 233332 2445788999999999999999999887 873 2454443221000000 01235799999999999
Q ss_pred eEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 211 GAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 211 G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
|.|+|.|.|..|...+..+.|.|..+|
T Consensus 236 g~Y~c~A~n~~G~~~s~~~~l~V~~~P 262 (731)
T 2v5y_A 236 GKYRCMIRTEGGVGISNYAELVVKEPP 262 (731)
T ss_dssp EEEEEEEEETTEEEECCCEEEEEECCC
T ss_pred eEEEEEEECCCCCcceeeEEEEEecCC
Confidence 999999999999645777888888766
No 306
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=99.47 E-value=3.2e-13 Score=84.96 Aligned_cols=83 Identities=22% Similarity=0.349 Sum_probs=62.4
Q ss_pred CceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEee---ceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVES---EVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.... ........ ..|.|.++..+|+|.|+|.|.|..|
T Consensus 13 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~k-~~~~~~~~~-----~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g 86 (99)
T 1u2h_A 13 MDQSVREGQDVIMSIRVQGEPKPVVSWLR-NRQPVRPDQ-----RRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYG 86 (99)
T ss_dssp CCEEEETTCCEEEEEEEEEESCCEEEEEE-TTEECCCBT-----TEEEEECGGGEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred CceEecCCCEEEEEEEEEEcCCCEEEEEE-CCEECCCCC-----CEEEEECCCCEEEEEEccCCcCCCEEEEEEEEECCC
Confidence 34578899999999999999999999999 554443211 11111112 2699999999999999999999999
Q ss_pred CCccceEEEEEEe
Q psy7941 223 PTVSKRLMLHVHC 235 (238)
Q Consensus 223 ~~~~~~~~l~V~~ 235 (238)
. .+.++.|.|..
T Consensus 87 ~-~~~~~~l~V~~ 98 (99)
T 1u2h_A 87 A-RQCEARLEVRG 98 (99)
T ss_dssp E-EEEEEEEEEEC
T ss_pred c-eeEEEEEEEEC
Confidence 4 47777888763
No 307
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1e-13 Score=89.39 Aligned_cols=91 Identities=19% Similarity=0.202 Sum_probs=65.2
Q ss_pred ccCCceeecCCCcEEEEEEEccc---cCCeEEEEeCCCeeeEeecCCCCCcceE-------EEeeceEEEEEeecCCCeE
Q psy7941 143 ETSGDMMVPEGGSAKLVCKAKGY---PTPKITWRREDNKEIIVRSNPPSSQKVF-------SVESEVLSLTKVTRSEMGA 212 (238)
Q Consensus 143 ~~~~~~~~~~g~~~~l~C~~~~~---p~~~~~W~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~G~ 212 (238)
..+..+.+.+|+.+.|.|.+.|. |.|.|.|++ ++....... ........ ......|.|.++...|+|.
T Consensus 17 ~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~K-gk~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 94 (118)
T 2edn_A 17 KKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFK-GKWLELGSK-SGARFSFKESHNSASNVYTVELHIGKVVLGDRGY 94 (118)
T ss_dssp BCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEE-TTTCCCCCS-TTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSC
T ss_pred ECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEee-CCEeccCCC-CccEEEeccccccccccceEEEEEeeCChhhCEE
Confidence 34566789999999999999874 789999999 431111000 00000000 1124579999999999999
Q ss_pred EEEEeeeCCCCCccceEEEEEEee
Q psy7941 213 YQCIAANGVPPTVSKRLMLHVHCT 236 (238)
Q Consensus 213 y~C~~~n~~g~~~~~~~~l~V~~~ 236 (238)
|+|.+.|..| ..+..+.|.|+.|
T Consensus 95 Y~Cevsn~~g-~~s~~~~L~V~~~ 117 (118)
T 2edn_A 95 YRLEVKAKDT-CDSCGFNIDVEAP 117 (118)
T ss_dssp EEEEEECSSC-EEEEEECCEEECC
T ss_pred EEEEEEEcCC-cEEEEEEEEEEcC
Confidence 9999999999 4588999999875
No 308
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Probab=99.46 E-value=2.7e-13 Score=85.22 Aligned_cols=80 Identities=24% Similarity=0.414 Sum_probs=61.9
Q ss_pred CCceeecCCCcEEEEEEEc-cccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAK-GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP 223 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~ 223 (238)
+....+.+|+.+.|.|.+. +.|.+.+.|++++..... .. ....++.|.|.++..+|+|.|+|.+.|..|.
T Consensus 17 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~--------~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~ 87 (98)
T 1gl4_B 17 QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLP--------SR-AMDFNGILTIRNVQPSDAGTYVCTGSNMFAM 87 (98)
T ss_dssp CCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCC--------TT-EEEETTEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred CCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCC--------ce-eecCCCEEEEeCCChhhCEEEEEEecCCCCc
Confidence 4456788999999999998 689999999995332211 11 2334568999999999999999999999994
Q ss_pred CccceEEEEEE
Q psy7941 224 TVSKRLMLHVH 234 (238)
Q Consensus 224 ~~~~~~~l~V~ 234 (238)
.+.++.|.|.
T Consensus 88 -~~~~~~l~V~ 97 (98)
T 1gl4_B 88 -DQGTATLHVQ 97 (98)
T ss_dssp -EEEEEEEEEC
T ss_pred -cccEEEEEEe
Confidence 4777777774
No 309
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.46 E-value=7.5e-13 Score=83.97 Aligned_cols=91 Identities=19% Similarity=0.252 Sum_probs=67.6
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN 87 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 87 (238)
++.|...+..+.+.+|+++.|.|.+.+ |.+.+.|+|++..+.. .
T Consensus 7 p~~~~~~~~~~~v~~G~~v~l~C~~~~---------------------------~~~~v~W~k~g~~l~~---------~ 50 (103)
T 1x44_A 7 GIMVTKQLEDTTAYCGERVELECEVSE---------------------------DDANVKWFKNGEEIIP---------G 50 (103)
T ss_dssp SCCCSBCCCCEEEETTEEEEEEEECSS---------------------------SSCCCEEEETTEECCC---------S
T ss_pred CceeeccCCCEEEECCCCEEEEEEecC---------------------------CCCeEEEEECCEECCC---------C
Confidence 445888899999999999999999853 2467999998765422 2
Q ss_pred c--cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCc
Q psy7941 88 A--RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPD 138 (238)
Q Consensus 88 ~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~ 138 (238)
. ++.+... ....+|.|.+++.+|+|.|+|.+.| ....+.|.|..+|.
T Consensus 51 ~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~n---~~~~~~l~V~~~p~ 99 (103)
T 1x44_A 51 PKSRYRIRVE-GKKHILIIEGATKADAAEYSVMTTG---GQSSAKLSVDLKSG 99 (103)
T ss_dssp TTCSEEEEEE-TTEEEEEEEEECTTTCSEEEEEETT---EEEEEEEEEECCCS
T ss_pred CceEEEEEEc-CCEEEEEECCCCcccCEEEEEEECC---CcEEEEEEEeCCCC
Confidence 2 4444432 2344899999999999999999976 35566788876654
No 310
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.46 E-value=4.7e-13 Score=81.38 Aligned_cols=82 Identities=17% Similarity=0.366 Sum_probs=59.0
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEE
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT 93 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (238)
....+.+.+|+++.|.|.+.+ |.+.+.|+|++..+. .+.++.+.
T Consensus 2 ~lt~v~~~~G~~v~l~C~vs~---------------------------p~p~v~W~k~g~~l~---------~~~~~~~~ 45 (84)
T 2lu7_A 2 HMTRVRSTPGGDLELVVHLSG---------------------------PGGPVRWYKDGERLA---------SQGRVQLE 45 (84)
T ss_dssp -CCCEEECTTSCEEEECCCSC---------------------------CSTTCEEEETTEECC---------CCSSEEEE
T ss_pred CCeEEEEecCCCEEEEEEECC---------------------------CCcEEEEEECCEEcc---------ccccEEEe
Confidence 356788999999999999742 356799999876643 23445544
Q ss_pred EcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEc
Q psy7941 94 HNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVI 135 (238)
Q Consensus 94 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~ 135 (238)
.. ....+|.|.+++.+|+|.|+|.+.+. ...+.|.|..
T Consensus 46 ~~-~~~~~L~I~~~~~~D~G~Y~C~a~n~---~~~a~l~V~e 83 (84)
T 2lu7_A 46 QA-GARQVLRVQGARSGDAGEYLCDAPQD---SRIFLVSVEE 83 (84)
T ss_dssp EC-SSCEEEEESSCSSTTCEEEEEECTTT---CEEEEEEECC
T ss_pred ec-CCeEEEEecCCCCcccEEEEEEECCE---EEEEEEEEEC
Confidence 43 33448999999999999999998442 4455666654
No 311
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus musculus} PDB: 3c60_A
Probab=99.46 E-value=6.8e-13 Score=93.82 Aligned_cols=172 Identities=17% Similarity=0.211 Sum_probs=99.5
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--e--eeeeee-eeEee
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--K--AVLAIH-EHVIT 85 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~--~~~~~~-~~~~~ 85 (238)
+.+.+..+.+.+|++++|.|.+..... ..+.||+... . .+.... .....
T Consensus 3 VtQ~p~~v~v~~G~svtL~C~~s~~~~--------------------------~~v~Wyrq~~g~~~~~l~~~~~~~~~~ 56 (200)
T 3rgv_A 3 VTQMQGQVTLSENDFLFINCTYSTTGY--------------------------PTLFWYVQYSGEGPQLLLQVTTANNKG 56 (200)
T ss_dssp EECCCSEEEEETTCCEEECCEEECSSC--------------------------CEEEEEEECTTSCCEEEEEECSTTCEE
T ss_pred cEECCCEEEEeCCCCEEEEEEecCCCC--------------------------cEEEEEEeCCCCCcEEEEEecCCCCcc
Confidence 456788899999999999999975322 2499998532 1 111111 00112
Q ss_pred cCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCC--CcceeeEEEEEcC---CcccccccCCceeecCCCcEEEE
Q psy7941 86 NNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNP--MTKQMAFLEVVIP---PDISSEETSGDMMVPEGGSAKLV 159 (238)
Q Consensus 86 ~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~~~---~~~~~~~~~~~~~~~~g~~~~l~ 159 (238)
..+||.... .....++|+|.+++.+|+|.|+|.+.... .-...+.|.|... +.+.+.. . ......+.|.
T Consensus 57 ~~~Rfs~~~~~~~~~~sL~I~~l~~~DsG~Y~Ca~~~~~~~~fG~GT~L~V~~~~~~~~P~V~~----~-~~~~~~~tl~ 131 (200)
T 3rgv_A 57 SSRGFEATYDKGTTSFHLQKTSVQEIDSAVYYCAANSGTYQRFGTGTKLQVVPNIQNPDPAVYQ----L-RDSKSSDKSV 131 (200)
T ss_dssp EETTEEEECBTTTTBCCEEESSCCSTTCEEEEEEEESSSCCCCCCCEEEEEECCCSSCCCEEEE----E-EESSSSSCEE
T ss_pred cCCceEEEECCCCCEEEEEEcCCcCccCCCEEEEeccCcccccCcCEEEEEeCCCCCCCCeEEE----c-cCCCCCceEE
Confidence 246787764 34467899999999999999999985321 1123346777642 2111110 0 0112337899
Q ss_pred EEEcc-ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeee
Q psy7941 160 CKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219 (238)
Q Consensus 160 C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n 219 (238)
|.+.+ +|.-.+.|.+++. .+..... .........-....+...+...|.|.+..
T Consensus 132 Cl~~gf~P~i~v~~~~~g~-~~~~~~t-----~~~~~~~~~~~~~~~~w~~~~~~~c~~~~ 186 (200)
T 3rgv_A 132 CLFTDFDSQTNVSQSKDSD-VYITDKC-----VLDMRSMDFKSNSAVAWSNKSDFACANAF 186 (200)
T ss_dssp EEEESCCTTCCCCCCSSTT-CEECCCE-----EEEEGGGTEEEEEEEEECSCSSCCTTTTT
T ss_pred EEcccccCCeEeEeccCCc-EEeecce-----EEccccccccccceEEecCCCceEeeeec
Confidence 99988 6644899999544 3332110 00000000111233456677788888764
No 312
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.46 E-value=5.4e-13 Score=82.44 Aligned_cols=78 Identities=15% Similarity=0.323 Sum_probs=56.6
Q ss_pred cccceeccCcee--EEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe
Q psy7941 7 FEPDFLYPLENV--TIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI 84 (238)
Q Consensus 7 ~~p~~~~~~~~~--~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~ 84 (238)
.||.|..+++.+ .+.+|+++.|.|.+.+ |.+.+.|+|++..+.
T Consensus 3 ~P~~i~~p~~~~~v~~~~g~~v~l~C~v~~---------------------------p~~~v~W~k~g~~i~-------- 47 (91)
T 2lvc_A 3 MPVHIVDPREHVFVHAITSECVMLACEVDR---------------------------EDAPVRWYKDGQEVE-------- 47 (91)
T ss_dssp CCCCCCBCCSCEEEECCTTCCEEEEEECSC---------------------------TTSCCEEEETTSCCC--------
T ss_pred CCcEEeccCCCeEEEEECCCcEEEEEEECC---------------------------CCcEEEEEECCEEee--------
Confidence 456676666654 4568999999999842 356699999877643
Q ss_pred ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941 85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121 (238)
Q Consensus 85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 121 (238)
.+.++.+... ....+|.|.+++.+|+|.|+|.+.|
T Consensus 48 -~~~~~~i~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n 82 (91)
T 2lvc_A 48 -ESDFVVLENE-GPHRRLVLPATQPSDGGEFQCVAGD 82 (91)
T ss_dssp -CCSSCEEEEE-TTEEEEEESSCCGGGCSEEEEECSS
T ss_pred -eeeeeeEEec-CCeEEEEeCCCChhhcEEEEEEEcc
Confidence 2344544433 2344899999999999999999855
No 313
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=99.45 E-value=2.1e-13 Score=88.82 Aligned_cols=98 Identities=20% Similarity=0.248 Sum_probs=66.9
Q ss_pred EEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEE-----EeeceEEEEE
Q psy7941 130 FLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS-----VESEVLSLTK 204 (238)
Q Consensus 130 ~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~ 204 (238)
.|+|..+|.+...... .......|.|.+.|.|.|.+.|++ ++..+..... ..... ...+.|.|.+
T Consensus 2 ~L~V~~pP~i~~~~~~-----~~~~~~~l~C~~~g~P~p~i~W~k-~g~~l~~~~~----~~~~~~~~~~~~~~~L~i~~ 71 (118)
T 1wwc_A 2 ALTVYYPPRVVSLEEP-----ELRLEHCIEFVVRGNPPPTLHWLH-NGQPLRESKI----IHVEYYQEGEISEGCLLFNK 71 (118)
T ss_dssp --CCCCCCCCCCCCCC-----CCCCEEEEEEEEECSSCCEEEEEE-TTEECCCSSS----EEEEEEECSSEEEEEEEEES
T ss_pred EEEEecCCceeccCCC-----eeccceEEEEEeeeeCCCeEEEEE-CCEECCCCCc----eeEEEeccCccccEEEEECC
Confidence 3556667765433111 123567899999999999999999 5554432110 11111 1345799999
Q ss_pred eecCCCeEEEEEeeeCCCCCccceEEEEEEeecC
Q psy7941 205 VTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTYL 238 (238)
Q Consensus 205 ~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p~ 238 (238)
+..+|+|.|+|.|.|..|.. ..++.|.|..+|+
T Consensus 72 ~~~~d~G~Y~C~a~N~~G~~-~~~~~l~v~~~P~ 104 (118)
T 1wwc_A 72 PTHYNNGNYTLIAKNPLGTA-NQTINGHFLKEPF 104 (118)
T ss_dssp CCGGGCEEEEEEEEETTEEE-EEEEEECCSCCCC
T ss_pred CChhcCEEEEEEEECCCCeE-eeEEEEEEccCCC
Confidence 99999999999999999944 7788888777663
No 314
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=4.3e-13 Score=84.55 Aligned_cols=84 Identities=14% Similarity=0.130 Sum_probs=63.4
Q ss_pred cCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCC
Q psy7941 144 TSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGV 221 (238)
Q Consensus 144 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~ 221 (238)
......+.+|+.+.|.|.+ .|.|.+.|++ ++..+.... ....... ...|.|.++..+|+|.|+|.|.|.
T Consensus 13 ~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k-~g~~l~~~~-----r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~- 83 (100)
T 2yuz_A 13 PLTDQTVNLGKEICLKCEI--SENIPGKWTK-NGLPVQESD-----RLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY- 83 (100)
T ss_dssp CCCCEEEETTSCCCEEEEC--SSCCCEEEEE-TTEECCCCS-----SEEEEECSSEEEEEESSCCGGGCSEEEEEESSS-
T ss_pred cCCceEEcCCCCEEEEEEe--CCCCeEEEEE-CCEECCCCC-----cEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC-
Confidence 3556788999999999999 7889999999 555543211 1111111 237999999999999999999997
Q ss_pred CCCccceEEEEEEeecC
Q psy7941 222 PPTVSKRLMLHVHCTYL 238 (238)
Q Consensus 222 g~~~~~~~~l~V~~~p~ 238 (238)
..+.++.|.|..+|.
T Consensus 84 --~~~~~a~L~V~~~P~ 98 (100)
T 2yuz_A 84 --NVTLPAKVHVISGPS 98 (100)
T ss_dssp --CCCEEEEEEEECCSC
T ss_pred --CeeEEEEEEEeCCCC
Confidence 337788899998883
No 315
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI, thick filament, immunoglobulin domain; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.45 E-value=1.2e-13 Score=92.28 Aligned_cols=85 Identities=16% Similarity=0.322 Sum_probs=62.8
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCC---------------------------eeeEeecCCCCCcceEEEe-
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN---------------------------KEIIVRSNPPSSQKVFSVE- 196 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~---------------------------~~~~~~~~~~~~~~~~~~~- 196 (238)
+..+.+..|+.+.|.|.+.|.|.|.+.|++++. ..+.. ..........
T Consensus 25 p~~~~v~~G~~v~L~C~~~G~P~P~i~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~r~~i~~~~ 100 (139)
T 1gxe_A 25 PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCE----TEGRVRVETTK 100 (139)
T ss_dssp CCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCS----CSSSCEEEEET
T ss_pred CCCEEEeCCCeEEEEEEEEEcCCCeEEEEECCcccccccccccccccccccccccccccceeecC----CCCeEEEEeCC
Confidence 456789999999999999999999999999652 11100 0111111111
Q ss_pred -eceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941 197 -SEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 197 -~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
...|.|.++..+|+|.|+|.|.|..|. .+.++.|.|.
T Consensus 101 ~~s~L~I~~v~~~DsG~Y~C~A~N~~G~-~~~~~~L~V~ 138 (139)
T 1gxe_A 101 DRSIFTVEGAEKEDEGVYTVTVKNPVGE-DQVNLTVKVI 138 (139)
T ss_dssp TEEEEECSCCCTTTCEEEEEEEECSSCE-EEEEEEEEEC
T ss_pred CEEEEEECCCCcccCEEEEEEEEeCCce-EEEEEEEEEE
Confidence 236999999999999999999999994 4778888774
No 316
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; 3.52A {Mus musculus}
Probab=99.45 E-value=1.3e-11 Score=87.97 Aligned_cols=179 Identities=19% Similarity=0.322 Sum_probs=104.7
Q ss_pred eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE----------eecC
Q psy7941 18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV----------ITNN 87 (238)
Q Consensus 18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~----------~~~~ 87 (238)
-.+++|+++.|+|.++... +. ...+.|+|+........-..+ ..-.
T Consensus 10 ~lvkPG~Sl~lSC~~SG~t---f~---------------------~y~~~WvRQaPGkgLEWvg~I~~~~g~t~Y~~s~k 65 (254)
T 4f9p_D 10 EVVRPGTSVKVSCKASGYA---FT---------------------SYLIHWIKQRPGQGLEWIGVINPRSGDSHYNEKFK 65 (254)
T ss_dssp EEECTTCCEEEEEEEESSC---GG---------------------GCCEEEEEEETTTEEEEEEEEETTTTEEECCTTTT
T ss_pred ceECCCCCeEEEEEEeCCC---hh---------------------hCcEEEEEeCCCCCeEEEEEEcCCCCCEEECHHhC
Confidence 3578999999999997431 11 123788885321111111111 1124
Q ss_pred ccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcC----C---------------cccccccCC
Q psy7941 88 ARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIP----P---------------DISSEETSG 146 (238)
Q Consensus 88 ~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~----~---------------~~~~~~~~~ 146 (238)
+||.+...+. +.+.|.+.+++.+|++.|+|.-... ...-..+.++|... | .+.....+.
T Consensus 66 gR~TiSrD~s~nt~yLqm~sL~~eDTAvYYCAr~~~~d~WGqGT~VTVSSast~~ps~~~l~~~~sgGSgsdivltQsP~ 145 (254)
T 4f9p_D 66 DRTTLTADQSSSTAYMQLSSLTSDDSAVYFCARSDYGAYWGQGTLVTVSAAGGGGSGGGGSGGGGSGGGGSDIVLTQSPV 145 (254)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEECEESSSCCEECCCEEEEECC-------------------CCSCCEEEECS
T ss_pred CCEEEeeccCCCcCeeEEccCCCCCCEEEEEEecCCCCCcCCCEEEEEeCCCCcCCCCCCCccccccccccccccccCCc
Confidence 6888876544 6788999999999999999965321 11112233444321 1 122223355
Q ss_pred ceeecCCCcEEEEEEEccccCCeEEEEeCCC----eeeEeecC--CC-CCcceE-E--EeeceEEEEEeecCCCeEEEEE
Q psy7941 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDN----KEIIVRSN--PP-SSQKVF-S--VESEVLSLTKVTRSEMGAYQCI 216 (238)
Q Consensus 147 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~----~~~~~~~~--~~-~~~~~~-~--~~~~~l~i~~~~~~d~G~y~C~ 216 (238)
.+.+..|+.++|.|.+...-...+.|++... +.++-... .. ...++. . ....+|.|..++.+|.+.|.|.
T Consensus 146 slsvs~G~~vtlsC~~S~~~~~~l~WyqQ~PG~~p~lLiy~~s~~~sGvp~RFSgS~sgt~ftLtIs~lq~eD~A~YYC~ 225 (254)
T 4f9p_D 146 TLSVTPGDSVSLSCRASQSISNNLHWYRQKSHESPRLLIKYASQSIFGIPSRFSGSGSGTEFTLSINSVETEDFGIYFCQ 225 (254)
T ss_dssp EEEECTTCEEEEEEEESSCCTTCCEEEEECTTSCCEEEEETTTEECTTSCTTCEEECCTTEEEEEEESCCTTCCEEEEEE
T ss_pred eeEEcCCCcEeeEEEccCcccCCcEEEEECCCCCCEEEEEeeeecCCCCCCCEEeeeeCCEEEEEECCCCHHHCEEEEEe
Confidence 5778999999999998654344689987321 11211110 00 011111 1 1123699999999999999997
Q ss_pred eeeC
Q psy7941 217 AANG 220 (238)
Q Consensus 217 ~~n~ 220 (238)
..+.
T Consensus 226 q~~~ 229 (254)
T 4f9p_D 226 QSNS 229 (254)
T ss_dssp ECSS
T ss_pred ecCC
Confidence 6654
No 317
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.18 E-value=6.1e-15 Score=103.34 Aligned_cols=134 Identities=15% Similarity=0.239 Sum_probs=83.8
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeee-eeEee
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIH-EHVIT 85 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~-~~~~~ 85 (238)
+.+.+..+.+.+|++++|.|.+.... .+.+.||++... .+.... .....
T Consensus 3 v~Q~p~~v~v~~G~svtL~C~~s~~~--------------------------~~~v~Wyrq~~g~~~~~li~~~~~~~~~ 56 (185)
T 3c6l_A 3 VRQSPQSLTVWEGETAILNCSYEDST--------------------------FDYFPWYHQFPGESPALLIAIRPVSNKK 56 (185)
Confidence 34567788999999999999986421 225999996421 111110 11112
Q ss_pred cCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcC-----CcccccccCCceeecCCCcEEE
Q psy7941 86 NNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIP-----PDISSEETSGDMMVPEGGSAKL 158 (238)
Q Consensus 86 ~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~-----~~~~~~~~~~~~~~~~g~~~~l 158 (238)
..+|+.+... ....++|+|.+++.+|+|.|+|.+.+.. .....+.|.|... |.+.... + ....+.|
T Consensus 57 ~~~R~s~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~fg~gT~L~V~~~~~~~~P~V~~~~-~------~~~~vtL 129 (185)
T 3c6l_A 57 EDGRFTIFFNKREKKFSLHIADSQPGDSATYFCAASDNRIFFGDGTQLVVKPNIQNPEPAVYQLK-D------PRSQDST 129 (185)
Confidence 3567766532 2356799999999999999999986421 1112335555532 2221110 1 1126899
Q ss_pred EEEEcc-ccCCeEEEEeCCCe
Q psy7941 159 VCKAKG-YPTPKITWRREDNK 178 (238)
Q Consensus 159 ~C~~~~-~p~~~~~W~~~~~~ 178 (238)
.|.+.| +|.|+|.|+. +..
T Consensus 130 ~C~~~gf~P~p~v~~~~-~~~ 149 (185)
T 3c6l_A 130 LCLFTDFDSQINVPKTM-ESG 149 (185)
Confidence 999988 8999999988 443
No 318
>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR complex, immune system; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D
Probab=99.45 E-value=4e-13 Score=96.46 Aligned_cols=177 Identities=14% Similarity=0.169 Sum_probs=101.4
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeeee-eE-
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIHE-HV- 83 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~-~~- 83 (238)
.+...+..+.+.+|++++|.|.+..... ...+.||+.... .+..... ..
T Consensus 5 ~v~Q~p~~v~v~~G~~vtL~C~~s~~~~-------------------------~~~v~Wyrq~~g~~~~~l~~~~~~~~~ 59 (211)
T 2ak4_D 5 KVTQAQTEISVVEKEDVTLDCVYETRDT-------------------------TYYLFWYKQPPSGELVFLIRRNSFDEQ 59 (211)
T ss_dssp EEECCCCEEEEETTCCEEECCEEECSCS-------------------------SCEEEEEEECTTCCCEEEEEEETTSCS
T ss_pred ceEEeCCEEEEecCCCEEEEEEecCCcC-------------------------ceeEEEEEECCCCccEEEEEECCCcCc
Confidence 3556678899999999999999964321 225999986421 1111111 00
Q ss_pred eecCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCC---C--cceeeEEEEEcCC---cccccccCCceeecCCC
Q psy7941 84 ITNNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNP---M--TKQMAFLEVVIPP---DISSEETSGDMMVPEGG 154 (238)
Q Consensus 84 ~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~--~~~~~~l~v~~~~---~~~~~~~~~~~~~~~g~ 154 (238)
....+||.+.. .....++|.|.+++.+|+|.|+|.+.+.. . ....+.|.|.... .+.+... .....
T Consensus 60 ~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~g~gt~L~V~~~~~~~~P~V~~~-----~~~~~ 134 (211)
T 2ak4_D 60 NEISGRYSWNFQKSTSSFNFTITASQVVDSAVYFCALSGFYNTDKLIFGTGTRLQVFPNIQNPDPAVYQL-----RDSKS 134 (211)
T ss_dssp EEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEECSBTTSCCEECCCEEEEEECCCSSCCCEEEEE-----BCCSS
T ss_pred cCcCCCEEEEEcCCCCEEEEEECccccccCceEEEEEEcCCCcceeeECCCEEEEEeCcCCCCCCEEEEc-----cCCCC
Confidence 01356888764 34567899999999999999999996531 1 1123467776432 1111100 01123
Q ss_pred cEEEEEEEcc-ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 155 SAKLVCKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 155 ~~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
.+.|.|.+.| +|.+.+.+.. +..... ......... ...+. .+......+..+|+|.+.+..+
T Consensus 135 ~vtL~Cl~~gf~P~~~v~~~~-~~~~~~-t~~~~~~~~---~~~S~-t~~~~~w~~g~~~tC~V~~~~~ 197 (211)
T 2ak4_D 135 SDKSVCLFTDFDSQTNVSQSK-DSDVYI-TDKCVLDMR---SMDFK-SNSAVAWSNKSDFACANAFNNS 197 (211)
T ss_dssp SCCEEEEEESCCTTCCCCCCS-SSSCEE-CCCEEEEEG---GGTEE-EEEEEEEECSTTCCTTSTTTTS
T ss_pred ceEEEEEeeeecCCccccccc-ccceEe-cCchhcccc---ccccc-cccHHHccCCCceEEEEecCCc
Confidence 7899999988 7888662221 111000 000000000 11223 5566666777799999987643
No 319
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=99.45 E-value=6e-13 Score=83.12 Aligned_cols=78 Identities=15% Similarity=0.342 Sum_probs=60.3
Q ss_pred CccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe
Q psy7941 5 RGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI 84 (238)
Q Consensus 5 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~ 84 (238)
...+|.|...+..+.+.+|+++.|.|.+.. .| +.+.|++++..+.
T Consensus 6 ~~~pp~~~~~~~~~~v~~G~~v~l~C~~~g--------------------------~p-p~i~W~k~g~~~~-------- 50 (95)
T 2ckn_A 6 QAQPWGVPVEVESLLVHPGDLLQLRCRLRD--------------------------DV-QSINWLRDGVQLV-------- 50 (95)
T ss_dssp SSCSCCBTTBBCCEEECTTSCEEEECCEES--------------------------SC-CEEEEEBTTBCCC--------
T ss_pred CCCCCEEEcCcceEEEcCCCeEEEEEECCC--------------------------CC-CceEEEECCEecC--------
Confidence 346778888899999999999999999863 23 4799999765532
Q ss_pred ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941 85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
...++.+.. .+|.|.+++.+|+|.|+|.+.|..
T Consensus 51 -~~~~~~~~~-----~~L~i~~~~~~D~G~Y~C~a~n~~ 83 (95)
T 2ckn_A 51 -ESNRTRITG-----EEVEVRDSIPADSGLYACVTSSPS 83 (95)
T ss_dssp -CCSSEEECS-----SEEEESSCCGGGSEEEEEEEEETT
T ss_pred -CCCCEEEeC-----CEEEECCCChHHCEEEEEEeccCC
Confidence 133444332 289999999999999999998753
No 320
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.4e-13 Score=86.76 Aligned_cols=82 Identities=28% Similarity=0.473 Sum_probs=62.0
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
+....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+... ..........|.|.++..+|.|.|+|.|.|..|.
T Consensus 18 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~-g~~~~~~------~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~- 89 (99)
T 2yr3_A 18 LKDCAVIEGQDFVLQCSVRGTPVPRITWLLN-GQPIQYA------RSTCEAGVAELHIQDALPEDHGTYTCLAENALGQ- 89 (99)
T ss_dssp CCCEEECTTCCEEEECEEEEESCCCCEEEES-SSBCSSC------CCEEETTEEEEEECSCCTTCCBCEEEEEECSSCE-
T ss_pred CCCCEEeCCCeEEEEEEEeeeCCCeEEEEEC-CEECccc------ceEeeCCeEEEEECCCChhhCEEEEEEEEECCCe-
Confidence 3456788999999999999999999999994 4333211 1112223457999999999999999999999994
Q ss_pred ccceEEEEEE
Q psy7941 225 VSKRLMLHVH 234 (238)
Q Consensus 225 ~~~~~~l~V~ 234 (238)
.+.++.|.|+
T Consensus 90 ~~~~~~l~V~ 99 (99)
T 2yr3_A 90 VSCSAWVTVH 99 (99)
T ss_dssp EEEECCEEEC
T ss_pred EEEEEEEEEC
Confidence 4677777663
No 321
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.45 E-value=6.4e-13 Score=83.68 Aligned_cols=94 Identities=17% Similarity=0.322 Sum_probs=68.2
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
+.+|.|...+..+.+.+|+++.|.|.+.. .|.+.+.|++++..+.. .
T Consensus 3 ~~pP~i~~~~~~~~~~~G~~~~l~C~~~g--------------------------~p~p~v~W~~~~~~~~~-------~ 49 (100)
T 3irg_A 3 GIPPKIEALPSDISIDEGKVLTVACAFTG--------------------------EPTPEVTWSCGGRKIHS-------Q 49 (100)
T ss_dssp CEEEEECCCCSEEEEETTSEEEEEEEEEE--------------------------ESCCEEEEEETTEECCT-------T
T ss_pred CCCCeeecCCCcEEEcCCCcEEEEEEEEE--------------------------cCCCceEEEECCEEeec-------C
Confidence 45788888899999999999999999853 34667999997655321 1
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEE
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEV 133 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v 133 (238)
...++.+... ....+|.|.+++.+|+|.|+|.+.|... ....+.|.|
T Consensus 50 ~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V 97 (100)
T 3irg_A 50 EQGRFHIENT-DDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97 (100)
T ss_dssp GGGTEEEEEC-SSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCEEEEEec-CCEEEEEEeecCcccCEEEEEEEEeCCCcEEEEEEEEE
Confidence 2345555443 2345899999999999999999987533 333444544
No 322
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=9.5e-13 Score=83.62 Aligned_cols=93 Identities=16% Similarity=0.275 Sum_probs=67.4
Q ss_pred cccceeccCce---eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE
Q psy7941 7 FEPDFLYPLEN---VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV 83 (238)
Q Consensus 7 ~~p~~~~~~~~---~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~ 83 (238)
.+|.+...+.. +.+.+|+++.|.|.+.. .|.+ +.|+|++..+..
T Consensus 6 ~~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~--------------------------~p~~-v~W~k~g~~~~~------ 52 (104)
T 2e6p_A 6 SGPVHILSPQDKVSLTFTTSERVVLTCELSR--------------------------VDFP-ATWYKDGQKVEE------ 52 (104)
T ss_dssp SSSCCCCBCCSCEEEEEESSSCEECCEECSS--------------------------TTCC-CEEEETTEECCC------
T ss_pred CCCCEEECCCCCccEEEeCCCcEEEEEEecC--------------------------CCCc-cEEeeCCEECCC------
Confidence 46777777776 88999999999999852 3455 899998765421
Q ss_pred eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcc
Q psy7941 84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDI 139 (238)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~ 139 (238)
..++.+... ....+|.|.+++.+|+|.|+|.+.|. ...+.|.|..+|..
T Consensus 53 ---~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~n~---~~~~~l~V~~~P~p 101 (104)
T 2e6p_A 53 ---SELLVVKMD-GRKHRLILPEAKVQDSGEFECRTEGV---SAFFGVTVQDPSGP 101 (104)
T ss_dssp ---BTTBEEEEE-TTEEEEEESSCCTTTCEEEEEECSSC---CCCEEEEEECCCCS
T ss_pred ---CCCEEEEeC-CCEEEEEECCCChhhCEEEEEEECCc---eEEEEEEEcCCCCC
Confidence 234443322 23448999999999999999999775 33667888876643
No 323
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=99.45 E-value=8.6e-13 Score=82.70 Aligned_cols=83 Identities=24% Similarity=0.420 Sum_probs=62.5
Q ss_pred CCceeecCCCcEEEEEEEccc-cCCeEEEEeCCCeeeEeecCCCCCcceEEEeec--eEEEEEeecCCCeEEEEEeeeCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGY-PTPKITWRREDNKEIIVRSNPPSSQKVFSVESE--VLSLTKVTRSEMGAYQCIAANGV 221 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~y~C~~~n~~ 221 (238)
+....+.+|+.+.|.|.+.|. |.|.+.|++ ++..+... ........++ .|.|.++..+|.|.|+|.|.|..
T Consensus 8 ~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~-~~~~~~~~-----~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~ 81 (97)
T 2bk8_A 8 IMHAVGEEGGHVKYVCKIENYDQSTQVTWYF-GVRQLENS-----EKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDY 81 (97)
T ss_dssp CCCEEECTTCCEEEEEEEESCCTTCEEEEEE-TTEECCSS-----SSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred CcCEEEcCCCcEEEEEEEeccCCCCEEEEEE-CCEECcCC-----CCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCC
Confidence 445778999999999999997 899999999 55443211 1111112333 79999999999999999999999
Q ss_pred CCCccceEEEEEE
Q psy7941 222 PPTVSKRLMLHVH 234 (238)
Q Consensus 222 g~~~~~~~~l~V~ 234 (238)
|.. ..++.|.|.
T Consensus 82 g~~-~~~~~l~V~ 93 (97)
T 2bk8_A 82 GED-SSYAELFVK 93 (97)
T ss_dssp CEE-EEEEEEEET
T ss_pred CeE-eEEEEEEEE
Confidence 944 667777775
No 324
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=7.5e-13 Score=84.43 Aligned_cols=92 Identities=22% Similarity=0.354 Sum_probs=68.9
Q ss_pred CccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe
Q psy7941 5 RGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI 84 (238)
Q Consensus 5 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~ 84 (238)
...+|.|...+..+.+.+|+++.|.|.+.. .|.+ +.|+|++..+.
T Consensus 5 ~~~~p~~~~~~~~~~v~~G~~v~l~C~~~~--------------------------~~~~-v~W~k~g~~~~-------- 49 (106)
T 2dlt_A 5 SSGQLEVLQDIADLTVKAAEQAVFKCEVSD--------------------------EKVT-GKWYKNGVEVR-------- 49 (106)
T ss_dssp SCCCCCEEECCCCEEEESSCCEECCCEESC--------------------------SSCE-EEEEESSCBCC--------
T ss_pred CCCCCEEecCCCCeEEeCCCeEEEEEEEcC--------------------------CCcc-eEEEcCCEECc--------
Confidence 456889999999999999999999999852 2344 99999876543
Q ss_pred ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEE
Q psy7941 85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVV 134 (238)
Q Consensus 85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~ 134 (238)
...++.+... ....+|.|.+++.+|+|.|+|.+.|. .....+.|.|.
T Consensus 50 -~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~-~~~~~~~l~V~ 96 (106)
T 2dlt_A 50 -PSKRITISHV-GRFHKLVIDDVRPEDEGDYTFVPDGY-ALSLSAKLNFL 96 (106)
T ss_dssp -CCSSCEEEEE-TTEEEEEESSCCTTTCSCEEEEEETS-CCCCCBCEEEE
T ss_pred -CCCCEEEEEe-CCEEEEEECCCCcCCCEEEEEEEccC-CceEEEEEEEE
Confidence 2334444332 23448999999999999999999886 44455666665
No 325
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=99.44 E-value=3.7e-13 Score=84.08 Aligned_cols=79 Identities=16% Similarity=0.400 Sum_probs=61.5
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
+....+.+|+.+.|.|.+.|.| |.+.|++ ++..+... .. ....+..|.|.++..+|+|.|+|.|.|..|.
T Consensus 16 ~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k-~g~~~~~~------~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~- 85 (95)
T 2ckn_A 16 VESLLVHPGDLLQLRCRLRDDV-QSINWLR-DGVQLVES------NR-TRITGEEVEVRDSIPADSGLYACVTSSPSGS- 85 (95)
T ss_dssp BCCEEECTTSCEEEECCEESSC-CEEEEEB-TTBCCCCC------SS-EEECSSEEEESSCCGGGSEEEEEEEEETTEE-
T ss_pred cceEEEcCCCeEEEEEECCCCC-CceEEEE-CCEecCCC------CC-EEEeCCEEEECCCChHHCEEEEEEeccCCCc-
Confidence 4557789999999999999987 8999999 55444321 11 2223668999999999999999999999994
Q ss_pred ccceEEEEE
Q psy7941 225 VSKRLMLHV 233 (238)
Q Consensus 225 ~~~~~~l~V 233 (238)
.+..+.|.|
T Consensus 86 ~~~~~~l~V 94 (95)
T 2ckn_A 86 DTTYFSVNV 94 (95)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 466777665
No 326
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.44 E-value=2e-13 Score=100.84 Aligned_cols=124 Identities=15% Similarity=0.285 Sum_probs=60.7
Q ss_pred cCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcccc-----CCeEEEEeCC-Ceee
Q psy7941 107 VRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYP-----TPKITWRRED-NKEI 180 (238)
Q Consensus 107 ~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-----~~~~~W~~~~-~~~~ 180 (238)
++.+|+|.|+|.+. +.......+.+..++.+. ..+..+.+.+|+.+.|.|.+.+.| .+.+.|++++ +...
T Consensus 11 v~~~dsg~Y~C~a~--g~~~~~~~~~~~~~~~~~--~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~ 86 (254)
T 2c1o_A 11 VRPGTSVKLSCKAS--GYSFTNYWMNWLRELVMT--QSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSP 86 (254)
T ss_dssp -----------------------------CCCEE--EECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCC
T ss_pred ecCCccEEEEEcCc--hhhhhhhhhheeeceeEE--eCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCc
Confidence 67899999999997 222222233333333332 234567889999999999999877 4899999743 2211
Q ss_pred E--eec----CCCCCcceEEE---eeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941 181 I--VRS----NPPSSQKVFSV---ESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 181 ~--~~~----~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~ 234 (238)
. ... ........... ....|.|.++..+|+|.|+|.|.|..+........|.|.
T Consensus 87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~ 149 (254)
T 2c1o_A 87 KRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELK 149 (254)
T ss_dssp EEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEEC
T ss_pred eEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEEC
Confidence 1 000 00011122211 223799999999999999999999865333334455554
No 327
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=99.44 E-value=2.8e-13 Score=86.41 Aligned_cols=92 Identities=23% Similarity=0.351 Sum_probs=68.2
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
...|.|...+..+.+.+|+++.|.|.+.+ .|.+.+.|++++..+.
T Consensus 12 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~g--------------------------~p~p~v~W~k~g~~l~--------- 56 (106)
T 1nct_A 12 TLAARILTKPRSMTVYEGESARFSCDTDG--------------------------EPVPTVTWLRKGQVLS--------- 56 (106)
T ss_dssp SCCCEEEECCCCEEESSSSCEECCEEEEC--------------------------SSCCBCCBCSSSSCCT---------
T ss_pred CCCCEEEECCCCEEEeCCCcEEEEEEEEE--------------------------cCCCEEEEEECCEECC---------
Confidence 35788999999999999999999999853 4467799999875532
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEE
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEV 133 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v 133 (238)
...++.+... ....+|.|.+++.+|+|.|+|.+.|... ....+.|.|
T Consensus 57 ~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 104 (106)
T 1nct_A 57 TSARHQVTTT-KYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104 (106)
T ss_dssp TCSSEEEEEC-SSEEEEEECCCCSSCCSEEEECCBCSSCBCCEEEEEEE
T ss_pred CCCCEEEEEC-CCEEEEEECcCCchhCEEEEEEEEeCCCeEEEEEEEEE
Confidence 2345554432 2345999999999999999999987533 344445554
No 328
>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; HET: NAG; 3.14A {Mus musculus}
Probab=99.44 E-value=7.6e-12 Score=89.72 Aligned_cols=181 Identities=21% Similarity=0.302 Sum_probs=104.2
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc----eeeeee-eeeEe
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT----KAVLAI-HEHVI 84 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~----~~~~~~-~~~~~ 84 (238)
.+++.|..+.+.+|++++|+|.++...+. .+.||++.. +++... .....
T Consensus 3 vlTQsP~sls~s~G~~vtisC~~S~~i~~--------------------------y~~WyqQ~pG~~P~lLiy~~s~~~s 56 (259)
T 4f9l_D 3 VLTQSPSSLSASLGDTITITCHASQNINL--------------------------WLSWYQQRPGNIPKLLIYRASNLHT 56 (259)
T ss_dssp CEEEECSBCCBCTTCEEEEEEEESSCCTT--------------------------CEEEEEECTTSCEEEEEETTTEECT
T ss_pred CEEccCCeEEECCCCCEEEEEEcCCCCCC--------------------------CEEEEEECCCCCCEEEEECCCccCC
Confidence 34567888899999999999997643332 388997532 111111 11111
Q ss_pred ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-c-ceeeEEEEEc---CC------------------cccc
Q psy7941 85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-T-KQMAFLEVVI---PP------------------DISS 141 (238)
Q Consensus 85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~-~~~~~l~v~~---~~------------------~~~~ 141 (238)
.-..||+..... .+++|+|.+++.+|.+.|+|....... . -..+.|+|+- .| .+..
T Consensus 57 Gvp~RFSgS~Sg-t~ftLtIs~lq~eD~A~YyC~~~~~~~~tFG~GTkLeikr~~aa~~~s~~~~s~~a~ssGv~sqvqL 135 (259)
T 4f9l_D 57 GVPSRFSGSGSA-TGFTLTISSLQPEDIATYYCQQGHSYPYTFGGGTKLDIKRADAGGGGSGGGGSGGGGSGGGGSQVQL 135 (259)
T ss_dssp TCCTTEEEEEET-TEEEEEEESCCGGGCEEEEEEECSSSSCCBCCCCEECBCCC----------------------CCCE
T ss_pred CCCCCEEeeccC-CeEEEEEcccChhhCEEEEEeecCCCCCCccCCeEEEEeccccCccccccccccccccCCccccceE
Confidence 124688876543 467999999999999999998633211 0 0111233220 00 0111
Q ss_pred cccCCceeecCCCcEEEEEEEcccc--CCeEEEEeCC-Ceee--EeecC---------CCCCcceEEEee-----ceEEE
Q psy7941 142 EETSGDMMVPEGGSAKLVCKAKGYP--TPKITWRRED-NKEI--IVRSN---------PPSSQKVFSVES-----EVLSL 202 (238)
Q Consensus 142 ~~~~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~~-~~~~--~~~~~---------~~~~~~~~~~~~-----~~l~i 202 (238)
. ......++.|..+.|.|.+.|+. ...+.|.+.. ++.+ ..... .....++....+ -.|.+
T Consensus 136 ~-eSG~~lvkPG~Sl~LSC~aSG~tfs~y~~~WvRQaPGkgLEwvg~I~~~~g~t~Ya~svkGRfTISrD~s~nt~yLqm 214 (259)
T 4f9l_D 136 Q-ESGAELVKPGASVKLSCKASGYTFTRYYLYWVKQRPGQGLEWIGEINPNNGGTKFNEKFKSKATLTVDKSSRTTYIQL 214 (259)
T ss_dssp E-EECCCEEESSSCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECTTSTTTEEEEEETTTTEEEEEE
T ss_pred E-eECCCEECCCCcEEEEEeeeCCCcccCcEEEEEECCCCceEEEeEEeCCCCceEecHhhcCCEEEEEEccccEEEEEE
Confidence 1 11223478899999999998854 3368898732 1111 11111 111122222221 26888
Q ss_pred EEeecCCCeEEEEEee
Q psy7941 203 TKVTRSEMGAYQCIAA 218 (238)
Q Consensus 203 ~~~~~~d~G~y~C~~~ 218 (238)
.+++.+|.+.|+|.-.
T Consensus 215 ~sL~~eDTAvYYCAr~ 230 (259)
T 4f9l_D 215 SSLTSEDSAVYYCSRE 230 (259)
T ss_dssp CSCCGGGCEEEEEEEE
T ss_pred CCCChHHCEEEEEEEe
Confidence 9999999999999754
No 329
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Probab=99.43 E-value=1.6e-12 Score=81.98 Aligned_cols=91 Identities=18% Similarity=0.202 Sum_probs=66.5
Q ss_pred cccceeccCce-eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 7 FEPDFLYPLEN-VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 7 ~~p~~~~~~~~-~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
.+|.|...+.. +.+.+|+++.|.|.+. .|.+.+.|+|++..+..
T Consensus 6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~---------------------------~p~~~v~W~k~g~~i~~-------- 50 (100)
T 2yuv_A 6 SGAAFAKILDPAYQVDKGGRVRFVVELA---------------------------DPKLEVKWYKNGQEIRP-------- 50 (100)
T ss_dssp SSCCEEECCCSCEEECTTEEEEEEEEES---------------------------CTTSCEEEEESSCBCCC--------
T ss_pred CCCeEEecCCCccEEcCCCcEEEEEEec---------------------------CCCceEEEEECCEECCC--------
Confidence 47888888776 6888999999999985 23567999998765422
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCC
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPP 137 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~ 137 (238)
..++.+... ....+|.|.+++.+|+|.|+|.+ +.....+.|.|..+|
T Consensus 51 -~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a---g~~~~~~~l~V~~~P 97 (100)
T 2yuv_A 51 -STKYIFEHK-GCQRILFINNCQMTDDSEYYVTA---GDEKCSTELFVRSGP 97 (100)
T ss_dssp -BTTEEEEEE-TTEEEEEEEEECTTTCCEEEEEE---TTEEEEEEEEECCSC
T ss_pred -CCCEEEEec-CCEEEEEEcCCCcCcCEEEEEEE---CCceEEEEEEEecCC
Confidence 335554432 23348999999999999999999 334455667776654
No 330
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=4.6e-13 Score=85.99 Aligned_cols=87 Identities=28% Similarity=0.355 Sum_probs=64.9
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe-e--ceEEEEEeecCCCeEEEEEeeeCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE-S--EVLSLTKVTRSEMGAYQCIAANGV 221 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~--~~l~i~~~~~~d~G~y~C~~~n~~ 221 (238)
+....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.... ........ + ..|.|.++..+|.|.|+|.|.|..
T Consensus 15 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k-~g~~~~~~~----~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~ 89 (110)
T 2dm2_A 15 LKHYKIFEGMPVTFTCRVAGNPKPKIYWFK-DGKQISPKS----DHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQ 89 (110)
T ss_dssp CCCEEEETTCCEEEEEEBCCSSCCEEEEEC-SSCBCCTTC----SSEEEEECTTCEEEEEESSCCTTTCSCCEEEEECTT
T ss_pred CcCeEEeCCCeEEEEEEEEecCCCEEEEEE-CCEECCCCC----CeEEEEECCCcEEEEEECCCChhhCEEEEEEEEECC
Confidence 455678999999999999999999999999 444332111 11111111 1 269999999999999999999999
Q ss_pred CCCccceEEEEEEeec
Q psy7941 222 PPTVSKRLMLHVHCTY 237 (238)
Q Consensus 222 g~~~~~~~~l~V~~~p 237 (238)
|.. +..+.|.|..+|
T Consensus 90 g~~-~~~~~l~V~~~~ 104 (110)
T 2dm2_A 90 GRI-SCTGRLMVQAVN 104 (110)
T ss_dssp CCE-EECCCEEEECCS
T ss_pred CeE-EEEEEEEEECCC
Confidence 954 778888888765
No 331
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.2e-12 Score=83.94 Aligned_cols=94 Identities=17% Similarity=0.193 Sum_probs=66.4
Q ss_pred cccceec---cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE
Q psy7941 7 FEPDFLY---PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV 83 (238)
Q Consensus 7 ~~p~~~~---~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~ 83 (238)
.+|.|.. .+..+.+.+|+++.|.|.+.. .|.+.+.|++++..+.
T Consensus 20 ~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g--------------------------~P~p~i~W~k~g~~l~------- 66 (118)
T 2e7c_A 20 EPPKIRLPRHLRQTYIRKVGEQLNLVVPFQG--------------------------KPRPQVVWTKGGAPLD------- 66 (118)
T ss_dssp EEEEECCCTTTSSCEEEESSSCEEEEEEEEE--------------------------ESCCEEEEEETTEECC-------
T ss_pred cCCeEecCcccCCCEEEECCCEEEEEEEEcc--------------------------CCCCEEEEEECCEECC-------
Confidence 3677754 357789999999999999853 4567899999876542
Q ss_pred eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCC
Q psy7941 84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPP 137 (238)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~ 137 (238)
..++.+.. .....+|.|.+++.+|+|.|+|.+.|... ....+.|.|...|
T Consensus 67 ---~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~P 117 (118)
T 2e7c_A 67 ---TSRVHVRT-SDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117 (118)
T ss_dssp ---CSSCEEEE-CSSEEEEEESSCCTTTCEEEEEEEECSSCEECCEEEEEEECCC
T ss_pred ---CCcEEEEE-CCCeEEEEECCCChhcCEEEEEEEEeCCCeEEEEEEEEEEcCC
Confidence 12333322 23344799999999999999999988633 4445566666544
No 332
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Probab=99.43 E-value=5.5e-13 Score=87.28 Aligned_cols=90 Identities=20% Similarity=0.299 Sum_probs=63.0
Q ss_pred eeecCCCcEEEEEEEccc--cCCeEEEEeCCCeeeEeecCCCCCcc----eEEEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941 148 MMVPEGGSAKLVCKAKGY--PTPKITWRREDNKEIIVRSNPPSSQK----VFSVESEVLSLTKVTRSEMGAYQCIAANGV 221 (238)
Q Consensus 148 ~~~~~g~~~~l~C~~~~~--p~~~~~W~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~ 221 (238)
+.+.+|+.+.|.|.+.|. |.+.+.|++++............... ......+.|.|.++..+|+|.|+|.|.|..
T Consensus 18 v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~ 97 (122)
T 3s35_X 18 IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL 97 (122)
T ss_dssp EEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEECSS
T ss_pred EEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEccCC
Confidence 467789999999999984 45689999955421100000000000 011234579999999999999999999999
Q ss_pred CCCccceEEEEEEeecC
Q psy7941 222 PPTVSKRLMLHVHCTYL 238 (238)
Q Consensus 222 g~~~~~~~~l~V~~~p~ 238 (238)
|.. ..++.|.|..+|.
T Consensus 98 g~~-~~~~~l~V~~~p~ 113 (122)
T 3s35_X 98 MTK-KNSTFVRVHEKPF 113 (122)
T ss_dssp CEE-EEEEEEEEEEEEC
T ss_pred Cce-EEEEEEEEeccCe
Confidence 944 7889999998874
No 333
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A
Probab=99.43 E-value=2.4e-12 Score=81.62 Aligned_cols=94 Identities=22% Similarity=0.379 Sum_probs=70.0
Q ss_pred CccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe
Q psy7941 5 RGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI 84 (238)
Q Consensus 5 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~ 84 (238)
...+|.|...+..+.+.+|+++.|.|.+.. .|.+ +.|++++..+.
T Consensus 5 ~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~--------------------------~p~~-v~W~k~~~~l~-------- 49 (103)
T 2e7b_A 5 SSGPVRFQEALKDLEVLEGGAATLRCVLSS--------------------------VAAP-VKWCYGNNVLR-------- 49 (103)
T ss_dssp CCCCCCCTBCCCCEEEESSSCEEEEEECSS--------------------------CCCS-CEEEESSSBCC--------
T ss_pred CCCCCEEEecCccEEEECCCcEEEEEEEeC--------------------------CCCC-eEEEECCEECC--------
Confidence 346788989999999999999999999852 3455 99999776542
Q ss_pred ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCc
Q psy7941 85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPD 138 (238)
Q Consensus 85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~ 138 (238)
...++.+... ....+|.|.+++.+|+|.|+|.+ +.....+.|.|..+|.
T Consensus 50 -~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~~---g~~~~~~~l~V~~~p~ 98 (103)
T 2e7b_A 50 -PGDKYSLRQE-GAMLELVVRNLRPQDSGRYSCSF---GDQTTSATLTVTALPS 98 (103)
T ss_dssp -CSSSEEEEEC-SSEEEEEECSCCTTTCCCEEEEC---SSCBCCBCEEEECCCC
T ss_pred -CCCcEEEEEc-CCEEEEEEccCCcccCEEEEEEE---CCcEEEEEEEEEeccc
Confidence 2345555433 34558999999999999999983 3345566788887664
No 334
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo sapiens} PDB: 2nx5_D 4dzb_A
Probab=99.43 E-value=3.6e-12 Score=90.65 Aligned_cols=165 Identities=14% Similarity=0.169 Sum_probs=92.2
Q ss_pred eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeeeeeEeecC
Q psy7941 12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIHEHVITNN 87 (238)
Q Consensus 12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~~~~~~~ 87 (238)
.+ +..+.+.+|++++|.|.+.... ...+.||+.... .+...........
T Consensus 4 ~Q-p~~~~v~~G~~vtL~C~~s~~~--------------------------~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~ 56 (200)
T 2nw2_A 4 DQ-PTEMTATEGAIVQINCTYQTSG--------------------------FNGLFWYQQHAGEAPTFLSYNVLDGLEEK 56 (200)
T ss_dssp BC-CSEEEEETTCCEEEEEECCCSS--------------------------CCCEEEEEECTTSCCEEEEEECSSEEEEE
T ss_pred EC-CCeEEEccCCCEEEEEEECCCC--------------------------CceEEEEEeCCCCCcEEEEEEcCCCcccC
Confidence 45 7788999999999999986432 234999986421 1111111111126
Q ss_pred ccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecC---CCc--ceeeEEEEEcCC---cccccccCCceeecCCCcEEE
Q psy7941 88 ARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTN---PMT--KQMAFLEVVIPP---DISSEETSGDMMVPEGGSAKL 158 (238)
Q Consensus 88 ~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~---~~~--~~~~~l~v~~~~---~~~~~~~~~~~~~~~g~~~~l 158 (238)
+||.+.. .....++|.|.+++.+|+|.|+|.+... ... ...+.|.|.... .+.+.. .. .....+.|
T Consensus 57 ~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~~~~~~~fg~gt~L~V~~~~~~~~P~V~~----~~-~~~~~~tl 131 (200)
T 2nw2_A 57 GRFSSFLSRSKGYSYLLLKELQMKDSASYLCAVQASGGSYIPTFGRGTSLIVHPYIQNPDPAVYQ----LR-DSKSSDKS 131 (200)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC---CCCCCEECCCEEEEEECCCSSCCCEEEE----EE-ECC--CCE
T ss_pred CceEEEecCCCCEEEEEECccCcccCCcEEEEEEcCCcceeeeeCCCEEEEEecCcccCCCeEEE----cC-CCCCCceE
Confidence 7888764 3456789999999999999999998641 111 123467776421 111100 01 11227899
Q ss_pred EEEEccc-cCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 159 VCKAKGY-PTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 159 ~C~~~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
.|.+.+. |...+.+.. . ..........|.+......+.|.+.|...|..+
T Consensus 132 ~Cl~~gf~P~~~v~~~~----~----------~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~ 182 (200)
T 2nw2_A 132 VCLFTDFDSQTNVSQSK----D----------SDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFA 182 (200)
T ss_dssp EEEEESCCTTCCCCCCS----S----------SSEEECCCEEEEEGGGTEEEEEEEEEESSSSCC
T ss_pred EEEeecccCCcEeeccc----c----------cceEecCchhhhhhhcccccccceeccCCCceE
Confidence 9999884 443432111 1 011111122344444444556778888777654
No 335
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=3.1e-12 Score=81.06 Aligned_cols=94 Identities=21% Similarity=0.267 Sum_probs=69.6
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
..+|.|...+..+.+.+|+++.|.|.+. .|.+.+.|++++..+.
T Consensus 6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~---------------------------~p~~~v~W~k~~~~l~--------- 49 (103)
T 2dku_A 6 SGANCFTEELTNLQVEEKGTAVFTCKTE---------------------------HPAATVTWRKGLLELR--------- 49 (103)
T ss_dssp CCCCCCSSCCCCEEEETTSEEEEEEECS---------------------------SCCSCCEEEESSCBCC---------
T ss_pred CCCCEeEecCCcEEEeCCCcEEEEEEeC---------------------------CCCCeEEEEeCCEECC---------
Confidence 4578999999999999999999999952 2355799999876542
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcc
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDI 139 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~ 139 (238)
...++.+.. ......|.|.+++.+|+|.|+|. .+.....+.|.|...|..
T Consensus 50 ~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~---~g~~~~~~~l~V~~~p~~ 99 (103)
T 2dku_A 50 ASGKHQPSQ-EGLTLRLTISALEKADSDTYTCD---IGQAQSRAQLLVQGRRSG 99 (103)
T ss_dssp SSSSEEEEE-ETTEEEEEEESCCTTTCSEEEEE---CSSCBCCEEEEEECSCCC
T ss_pred CCCeEEEEe-CCCEEEEEECCCCcccCEEEEEE---eCCceEEEEEEEeCccCC
Confidence 233555442 23445899999999999999998 333455677888766543
No 336
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.43 E-value=8.3e-13 Score=83.14 Aligned_cols=84 Identities=21% Similarity=0.410 Sum_probs=63.3
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe---eceEEEEEeecCCCeEEEEEeeeCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE---SEVLSLTKVTRSEMGAYQCIAANGV 221 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~y~C~~~n~~ 221 (238)
+....+.+|+.+.|.|.+.+.|.|.+.|++ ++..+.... ........ ...|.|.++..+|+|.|+|.|.|..
T Consensus 12 ~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~-~~~~~~~~~----~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~ 86 (100)
T 3irg_A 12 PSDISIDEGKVLTVACAFTGEPTPEVTWSC-GGRKIHSQE----QGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEF 86 (100)
T ss_dssp CSEEEEETTSEEEEEEEEEEESCCEEEEEE-TTEECCTTG----GGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCcEEEcCCCcEEEEEEEEEcCCCceEEEE-CCEEeecCC----CCEEEEEecCCEEEEEEeecCcccCEEEEEEEEeCC
Confidence 345678899999999999999999999999 554442111 11111112 2579999999999999999999999
Q ss_pred CCCccceEEEEEE
Q psy7941 222 PPTVSKRLMLHVH 234 (238)
Q Consensus 222 g~~~~~~~~l~V~ 234 (238)
|. .+..+.|.|.
T Consensus 87 g~-~~~~~~l~V~ 98 (100)
T 3irg_A 87 GS-DSATVNIHIR 98 (100)
T ss_dssp EE-EEEEEEEEEE
T ss_pred Cc-EEEEEEEEEE
Confidence 94 4778888775
No 337
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=99.43 E-value=2.2e-13 Score=92.98 Aligned_cols=85 Identities=26% Similarity=0.452 Sum_probs=64.8
Q ss_pred CceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEE---eeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV---ESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
....+..|+.+.|.|.+.|.|.|.+.|++ ++..+.... ...... ....|.|.++..+|.|.|+|.|.|..|
T Consensus 49 ~~~~v~~G~~v~L~C~~~g~P~p~v~W~k-~g~~~~~~~-----~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 122 (154)
T 1fhg_A 49 LDMEVVEGSAARFDCKVEGYPDPEVMWFK-DDNPVKESR-----HFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG 122 (154)
T ss_dssp CCEEEETTSCEEEEEEEEEESCCEEEEEE-TTEECCCSS-----SEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred CcEEEeCCCeEEEEEEEEEecCCEEEEEE-CCEECCCCC-----cEEEEECCCCeEEEEECCCChhcCEEEEEEEEECCC
Confidence 44678899999999999999999999999 554442211 111111 124799999999999999999999999
Q ss_pred CCccceEEEEEEeec
Q psy7941 223 PTVSKRLMLHVHCTY 237 (238)
Q Consensus 223 ~~~~~~~~l~V~~~p 237 (238)
. ....+.|.|..+|
T Consensus 123 ~-~~~~~~l~V~~~p 136 (154)
T 1fhg_A 123 E-ATCTAELLVETMG 136 (154)
T ss_dssp E-EEEEEEEEEECC-
T ss_pred e-EEEEEEEEEeCcC
Confidence 5 4788888888765
No 338
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=99.42 E-value=1.2e-12 Score=82.33 Aligned_cols=83 Identities=29% Similarity=0.445 Sum_probs=62.3
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
+....+.+|+.+.|.|.+.+.|.|.+.|++ ++..+... ........ ...|.|.++..+|+|.|+|.|.|..|
T Consensus 13 ~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~-~g~~~~~~-----~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 86 (99)
T 3puc_A 13 LQDTTVSSDSVAKFAVKATGEPRPTAIWTK-DGKAITQG-----GKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAG 86 (99)
T ss_dssp CCCEEEESSSCEEEEEEEEEESCCEEEEEE-TTEECCSS-----SSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred CccEEEeCCCcEEEEEEEEecCCCEEEEEE-CCEECcCC-----CCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeCCC
Confidence 344678899999999999999999999999 55444211 11111111 22699999999999999999999999
Q ss_pred CCccceEEEEEE
Q psy7941 223 PTVSKRLMLHVH 234 (238)
Q Consensus 223 ~~~~~~~~l~V~ 234 (238)
. .+.++.|.|.
T Consensus 87 ~-~~~~~~l~V~ 97 (99)
T 3puc_A 87 S-VSSSCKLTIK 97 (99)
T ss_dssp E-EEEEEEEEEE
T ss_pred c-EeEEEEEEEE
Confidence 4 4777777775
No 339
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Probab=99.42 E-value=6.5e-13 Score=83.74 Aligned_cols=84 Identities=24% Similarity=0.419 Sum_probs=62.6
Q ss_pred CceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCc
Q psy7941 146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTV 225 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~ 225 (238)
....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+..... ............|.|.++..+|+|.|+|.|.|..|. .
T Consensus 16 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~-~~~~~~~~~~--~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~-~ 91 (100)
T 3caf_A 16 RLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHR--IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-I 91 (100)
T ss_dssp CEEEECTTCCEEEECCEEEESCCEEEEEE-TTEECCGGGS--TTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEE-E
T ss_pred cEEEecCCCEEEEEEEccccCCCEEEEEE-CCEEcccccc--cccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCE-E
Confidence 44678899999999999999999999999 5544432111 111122223457999999999999999999999994 4
Q ss_pred cceEEEEE
Q psy7941 226 SKRLMLHV 233 (238)
Q Consensus 226 ~~~~~l~V 233 (238)
+.++.|.|
T Consensus 92 ~~~~~l~V 99 (100)
T 3caf_A 92 NHTYHLDV 99 (100)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 67777766
No 340
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}
Probab=99.41 E-value=9.4e-13 Score=86.46 Aligned_cols=91 Identities=18% Similarity=0.302 Sum_probs=65.7
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecC-CCCCcceEEE----eeceEEEEEeecCCCeEEEEEeee
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN-PPSSQKVFSV----ESEVLSLTKVTRSEMGAYQCIAAN 219 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~~~n 219 (238)
+..+.+.+|+++.|.|.+.+.|.+.+.|++.++..+..... .......... ....|.|.+++.+|+|.|+|.+.|
T Consensus 8 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n 87 (124)
T 3rbg_A 8 TETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYS 87 (124)
T ss_dssp EEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEEEEES
T ss_pred CccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEEEEEc
Confidence 34567889999999999999999999999855543321110 0011111111 135899999999999999999999
Q ss_pred CCCCCccceEEEEEEeec
Q psy7941 220 GVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 220 ~~g~~~~~~~~l~V~~~p 237 (238)
. | .....+.|.|..+|
T Consensus 88 ~-g-~~~~~~~l~V~~~P 103 (124)
T 3rbg_A 88 D-S-VSTKEVKVIVLATM 103 (124)
T ss_dssp S-S-EEEEEEEEEEECC-
T ss_pred C-C-CCcEEEEEEEEeCC
Confidence 9 7 55888999998876
No 341
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Probab=99.41 E-value=5.6e-15 Score=96.92 Aligned_cols=105 Identities=20% Similarity=0.330 Sum_probs=73.7
Q ss_pred ceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCe-EEEEeCCCeeeEeecCCCCCcceE-EEe----ece
Q psy7941 126 KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPK-ITWRREDNKEIIVRSNPPSSQKVF-SVE----SEV 199 (238)
Q Consensus 126 ~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~-~~~----~~~ 199 (238)
...+.|.|..+|.+.. +....+.+|+.+.|.|.+.|.|.|. +.|+++ +..+..... ...... ... ...
T Consensus 4 ~~~~~l~V~~~P~i~~---~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~-~~~l~~~~~--~~~~~~~~~~~~~~~~~ 77 (122)
T 2cry_A 4 GSSGTLTVNGPPIISS---TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWK-ENVLESGTS--GRYTVETISTEEGVIST 77 (122)
T ss_dssp SCCCCCCCCSSCCEEE---ECCCCCCTTSCCCCCEEECCSSCCSEEEEESS-SCEECSEEE--TTEEEEEEEETTEEEEE
T ss_pred ceEEEEEEecCCCccC---CCeEEEecCCCEEEEEEEeecCCCcEeEEEEC-CEEccCCCC--CCEEEEEecCCCceEEE
Confidence 3455677777887654 3456788999999999999999986 999995 443322100 000110 111 337
Q ss_pred EEEEEeecCCC-eEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 200 LSLTKVTRSEM-GAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 200 l~i~~~~~~d~-G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
|.|.++..+|. |.|+|.|.|..|.. ...+.|.|..++
T Consensus 78 L~I~~v~~~D~~G~Y~C~a~N~~G~~-~~~~~l~V~~~~ 115 (122)
T 2cry_A 78 LTISNIVRADFQTIYNCTAWNSFGSD-TEIIRLKEQGSE 115 (122)
T ss_dssp EECTTCCHHHHHSCEEEEEECSSCEE-EEEECCCCSCSS
T ss_pred EEEcCCChhhCCceEEEEEECCCCeE-EEEEEEEECCCC
Confidence 99999999999 99999999999954 678888776543
No 342
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus, PP65, T cell receptor (TCR), immune response, public response; 2.80A {Homo sapiens}
Probab=99.41 E-value=2e-13 Score=96.50 Aligned_cols=172 Identities=18% Similarity=0.246 Sum_probs=98.0
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--e--eeeeeee-eEee
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--K--AVLAIHE-HVIT 85 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~--~~~~~~~-~~~~ 85 (238)
+.+.+..+.+.+|+++.|.|.+.... ...+.|||... . .+..... ....
T Consensus 3 V~Q~p~~v~v~~G~svtL~C~~s~~~--------------------------~~~v~Wyrq~~g~~~~~l~~~~~~~~~~ 56 (199)
T 3gsn_A 3 VEQSPQSLHVQEGDSTNFTCSFPSSN--------------------------FYALHWYRWETAKSPEALFVMTLNGDEK 56 (199)
T ss_dssp CEEECSEEEEETTCCCEEEEECCCTT--------------------------CCCEEEEEECTTSCCEEEEEECSTTCCC
T ss_pred EEECCCEEEEeCCCCEEEEEEEcCCC--------------------------CCEEEEEEECCCCCcEEEEEECCCCCcc
Confidence 45677889999999999999986432 22489998632 1 1111110 0011
Q ss_pred cCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEcC---CcccccccCCceeecCCCcEEEE
Q psy7941 86 NNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIP---PDISSEETSGDMMVPEGGSAKLV 159 (238)
Q Consensus 86 ~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~---~~~~~~~~~~~~~~~~g~~~~l~ 159 (238)
..+||.+.. .....++|+|.+++.+|+|.|+|.+..... -...+.|.|... +.+.+..... ....+.|.
T Consensus 57 ~~~Rfs~~~~~~~~~~sL~I~~l~~~DsG~Y~Ca~~~~~~~~fG~GT~L~V~~~~~~~~P~V~~~~~-----~~~~~tl~ 131 (199)
T 3gsn_A 57 KKGRISATLNTKEGYSYLYIKGSQPEDSATYLCARNTGNQFYFGTGTSLTVIPNIQNPDPAVYQLRD-----SKSSDKSV 131 (199)
T ss_dssp EETTEECCCBTTTTEEEEEBSSCCGGGCEEEEEEEESSSCEEECSCEEEEEECCCSSCCCEEEECCC-----SSSSSSCC
T ss_pred ccCceEEEECCCCCEEEEEEccCcccCCccEEEEEcccccccCCCCEEEEEecccCCCCCEEEEccc-----CCCCceEE
Confidence 245776653 344678999999999999999999854221 112345677642 2111111100 11236789
Q ss_pred EEEcc-ccCCeEEEEeCCCeeeEeecC-CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeC
Q psy7941 160 CKAKG-YPTPKITWRREDNKEIIVRSN-PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANG 220 (238)
Q Consensus 160 C~~~~-~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~ 220 (238)
|.+.+ +|.-.+.|.+++ ..+..... -.... ...... ..+...+.+.|.|.+...
T Consensus 132 Cl~~gf~P~i~~~~~~~~-~~~~~~~t~~~~~~-~~~~~~-----~~~~w~~~~~~~c~~~~~ 187 (199)
T 3gsn_A 132 CLFTDFDSQTNVSQSKDS-DAYITDKTVLDMRS-MDFKSN-----SAVAWSNKSDFACANAFN 187 (199)
T ss_dssp EEEETCCTTCCSSCSSCS-SEEECCCBCCCCCS-SCCCCB-----CEEEEESCSCSCSSSSCC
T ss_pred EEeecccCCeEeEeccCC-CeEecCceEEcccc-cccccc-----ccEEecCCCccEeeeccc
Confidence 99988 663389999944 44432221 11111 111111 234556677888988744
No 343
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Probab=99.41 E-value=4e-12 Score=81.27 Aligned_cols=94 Identities=21% Similarity=0.349 Sum_probs=70.1
Q ss_pred CCccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE
Q psy7941 4 VRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV 83 (238)
Q Consensus 4 ~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~ 83 (238)
....+|.|...+..+.+.+|+++.|.|.+.. .+.+.|++++..+.
T Consensus 4 ~~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~----------------------------~p~v~W~k~~~~~~------- 48 (108)
T 2dm7_A 4 GSSGPARFTQDLKTKEASEGATATLQCELSK----------------------------VAPVEWKKGPETLR------- 48 (108)
T ss_dssp SSCCCCCBCSCCBCCEEETTSCEEEEEEBSS----------------------------SCCCEEESSSSBCC-------
T ss_pred ccCCCCeeeecCCcEEEeCCCcEEEEEEeCC----------------------------CCeeEEEECCEECC-------
Confidence 3457899999999999999999999999853 24599999876532
Q ss_pred eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCc
Q psy7941 84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPD 138 (238)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~ 138 (238)
.+.++.+... ....+|.|.+++.+|+|.|+|.+.+ ....+.|.|..+|.
T Consensus 49 --~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n---~~~~~~l~V~~~p~ 97 (108)
T 2dm7_A 49 --DGGRYSLKQD-GTRCELQIHDLSVADAGEYSCMCGQ---ERTSATLTVRALPA 97 (108)
T ss_dssp --SSSSCEEEEE-TTEEEEEESSCCTTTCSEEEEEETT---EEEEEECEEECCCS
T ss_pred --CCCCEEEEec-CCEEEEEECCCCcccCEEEEEEEcC---CEEEEEEEEecCCH
Confidence 2345555443 2345799999999999999999943 34556677776553
No 344
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=9.5e-14 Score=89.24 Aligned_cols=87 Identities=33% Similarity=0.558 Sum_probs=65.5
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
+....+.+|+.+.|.|.+.+.|.+.+.|+++ +..+.... ........ ...|.|.++..+|.|.|+|.|.|..|
T Consensus 16 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~-g~~~~~~~----~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g 90 (110)
T 2dm3_A 16 PGDLTVQEGKLCRMDCKVSGLPTPDLSWQLD-GKPVRPDS----AHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAG 90 (110)
T ss_dssp CCEEEEESSSCBCCEEEEECSSCCEEECBBS-SSBCCCCS----SEEEEECTTSCEEEEESSCCGGGCSBBCEEEECSSC
T ss_pred CCcEEEeCCCEEEEEEEEEEcCCCEEEEEEC-CEECCCCC----ceEEEEecCCeEEEEEeeCCcccCEEEEEEEECCCC
Confidence 4456788999999999999999999999994 43332111 01111111 23799999999999999999999999
Q ss_pred CCccceEEEEEEeec
Q psy7941 223 PTVSKRLMLHVHCTY 237 (238)
Q Consensus 223 ~~~~~~~~l~V~~~p 237 (238)
. .+..+.|.|..+|
T Consensus 91 ~-~~~~~~l~V~~~p 104 (110)
T 2dm3_A 91 Q-NSFSLELVVAAKE 104 (110)
T ss_dssp E-EEECCEEEEECCC
T ss_pred E-EEEEEEEEEeCCC
Confidence 5 5888889998765
No 345
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A 3tfk_C 1j8h_D* 1fyt_D* 4gkz_A* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A* 2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B 3e3q_D 4h1l_G
Probab=99.41 E-value=3.7e-12 Score=91.51 Aligned_cols=137 Identities=17% Similarity=0.243 Sum_probs=84.1
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--e--eeeeee-eeEe
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--K--AVLAIH-EHVI 84 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~--~~~~~~-~~~~ 84 (238)
.+.+.+..+.+.+|++++|.|.+..... ..+.||++.. . .+.... ....
T Consensus 11 ~V~Qsp~~v~v~~G~sVtL~C~~s~~~~--------------------------~~v~WyrQ~pg~~~~~Li~~~~~~~~ 64 (226)
T 3tjh_C 11 SVTQPDARVTVSEGASLQLRCKYSYSAT--------------------------PYLFWYVQYPRQGLQMLLKYYSGDPV 64 (226)
T ss_dssp EEECSCSEEEEETTSCEEECCEEEESSC--------------------------EEEEEEEECTTSCCEEEEEECSSSSE
T ss_pred EEEEeCCEEEEEcCCCEEEEEEEecCCC--------------------------CeEEEEEECCCCCcEEEEEecCCCcc
Confidence 4567788899999999999999975322 2489999632 1 111111 1001
Q ss_pred ecC-ccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecC---CC--cceeeEEEEEcC---CcccccccCCceeecCCC
Q psy7941 85 TNN-ARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTN---PM--TKQMAFLEVVIP---PDISSEETSGDMMVPEGG 154 (238)
Q Consensus 85 ~~~-~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~---~~--~~~~~~l~v~~~---~~~~~~~~~~~~~~~~g~ 154 (238)
... +||.... .....++|+|.+++.+|+|.|+|.+... .. -...+.|.|... +.+.+.. ..-. ..
T Consensus 65 ~~~~~Rfs~s~~~~~~~~sLtI~~lq~~DSG~YyCa~~~~~~~~~~~fG~GT~LtV~~~~~~~~P~V~~----~~~~-~~ 139 (226)
T 3tjh_C 65 VQGVNGFEAEFSKSDSSFHLRKASVHWSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPNIQNPDPAVYQ----LRDS-KS 139 (226)
T ss_dssp EECGGGEEEEEETTTTEEEEEESSCCGGGCEEEEEEEEESSCSSSEEECCCEEEEEECCCSSCCCEEEE----EEEC-C-
T ss_pred ccccCcEEEEEcCCCCEEEEEEecCCcccCCCEEEEEEecCCccccccCCCeEEEEeCCCCCCCCEEEE----cccC-CC
Confidence 123 7888764 4457889999999999999999998632 11 112245666642 1111110 0111 13
Q ss_pred cEEEEEEEcc-ccCCeEEEEeCCC
Q psy7941 155 SAKLVCKAKG-YPTPKITWRREDN 177 (238)
Q Consensus 155 ~~~l~C~~~~-~p~~~~~W~~~~~ 177 (238)
.+.|.|.+.+ +|.-.+.|.++++
T Consensus 140 ~~tl~Cl~~~f~P~i~v~~~~~~~ 163 (226)
T 3tjh_C 140 SDKSVCLFTDFDSQTNVSQSKDSD 163 (226)
T ss_dssp --CEEEEEESCCTTCCCCCCSCTT
T ss_pred CeEEEEEcccccCCcEEEeeccCc
Confidence 4789999988 6744899999444
No 346
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=99.41 E-value=6.6e-12 Score=78.60 Aligned_cols=89 Identities=18% Similarity=0.288 Sum_probs=63.4
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCcc
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNAR 89 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~ 89 (238)
.+..++..+.+.+|+++.|.|.+... .|.+.+.|++++..+. ...+
T Consensus 3 ~v~~~~~~~~v~~G~~v~l~C~~~g~-------------------------~p~~~v~W~~~~~~~~---------~~~~ 48 (97)
T 2bk8_A 3 MVSGQIMHAVGEEGGHVKYVCKIENY-------------------------DQSTQVTWYFGVRQLE---------NSEK 48 (97)
T ss_dssp CEECCCCCEEECTTCCEEEEEEEESC-------------------------CTTCEEEEEETTEECC---------SSSS
T ss_pred ceeccCcCEEEcCCCcEEEEEEEecc-------------------------CCCCEEEEEECCEECc---------CCCC
Confidence 34567788999999999999999631 1466899999876432 2345
Q ss_pred EEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEE
Q psy7941 90 LSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEV 133 (238)
Q Consensus 90 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v 133 (238)
+.+... .+..+|.|.+++.+|+|.|+|.+.|... ....+.|.|
T Consensus 49 ~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V 92 (97)
T 2bk8_A 49 YEITYE-DGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92 (97)
T ss_dssp EEEEEE-TTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred EEEEEc-CCeEEEEEecCChhhCeEEEEEEECCCCeEeEEEEEEE
Confidence 554332 3455899999999999999999987643 333444544
No 347
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.40 E-value=3.9e-13 Score=81.73 Aligned_cols=79 Identities=20% Similarity=0.425 Sum_probs=57.5
Q ss_pred CceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941 146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGVPP 223 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~g~ 223 (238)
..+.+.+|+.+.|.|.+.+ |.|.+.|++ ++..+.... ....... ...|.|.++..+|+|.|+|.|.|.
T Consensus 4 t~v~~~~G~~v~l~C~vs~-p~p~v~W~k-~g~~l~~~~-----~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~--- 73 (84)
T 2lu7_A 4 TRVRSTPGGDLELVVHLSG-PGGPVRWYK-DGERLASQG-----RVQLEQAGARQVLRVQGARSGDAGEYLCDAPQD--- 73 (84)
T ss_dssp CCEEECTTSCEEEECCCSC-CSTTCEEEE-TTEECCCCS-----SEEEEECSSCEEEEESSCSSTTCEEEEEECTTT---
T ss_pred eEEEEecCCCEEEEEEECC-CCcEEEEEE-CCEEccccc-----cEEEeecCCeEEEEecCCCCcccEEEEEEECCE---
Confidence 3467889999999999876 888999999 666553321 1111112 236999999999999999998542
Q ss_pred CccceEEEEEEee
Q psy7941 224 TVSKRLMLHVHCT 236 (238)
Q Consensus 224 ~~~~~~~l~V~~~ 236 (238)
+.++.|.|..|
T Consensus 74 --~~~a~l~V~eP 84 (84)
T 2lu7_A 74 --SRIFLVSVEEP 84 (84)
T ss_dssp --CEEEEEEECCC
T ss_pred --EEEEEEEEECC
Confidence 56677888754
No 348
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.40 E-value=1e-12 Score=102.12 Aligned_cols=108 Identities=21% Similarity=0.319 Sum_probs=60.3
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEE
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT 93 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (238)
.+..+.+.+|+++.|.|.+. + |.+.+.|+++++...... ....++.+
T Consensus 252 ~~~~v~v~~G~~~~l~C~~~--------------------------g-p~p~i~W~~~~~~~~~~~-----~~~~r~~~- 298 (361)
T 2xot_A 252 KESAWEAHLGDTLTIRCDTK--------------------------Q-QGMTKVWVSPSNEQVLSQ-----GSNGSVSV- 298 (361)
T ss_dssp CCCCCEEETTCCEEECCCCS--------------------------S-TTCEEEEECTTSCBCCSC-----CSSSSEEE-
T ss_pred cccCceecCCCeEEEEeEee--------------------------C-CCCeEEEEeCCCeeEeec-----ccCCceEe-
Confidence 35567889999999999984 2 467899999776543211 12335555
Q ss_pred EcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCeEE
Q psy7941 94 HNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKIT 171 (238)
Q Consensus 94 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~ 171 (238)
... +|.|.+++.+|+|.|+|.+.|... ....+.+.|... ...|+.+.|.|.+.|.|.|.|.
T Consensus 299 ~~~----~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~-------------~~~g~~~~l~C~~~g~P~P~i~ 360 (361)
T 2xot_A 299 RNG----DLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNF-------------TLHGHHDTLNAAADPWSHPQFE 360 (361)
T ss_dssp ETT----EEEESSCCTTSCEEEEEEEECSSCEEEEEEEEEEESS-------------CCC-------------------
T ss_pred ecC----eEEEeecCcccCEEEEEEEecCCCccEEEEEEEEEee-------------eccCCceEEEEEeCCCCCCccc
Confidence 222 899999999999999999988633 334445555321 1457789999999999988764
No 349
>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}
Probab=99.40 E-value=4e-13 Score=87.28 Aligned_cols=90 Identities=29% Similarity=0.524 Sum_probs=62.1
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEE-----EeecCCCeEEEEEeee
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT-----KVTRSEMGAYQCIAAN 219 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~-----~~~~~d~G~y~C~~~n 219 (238)
+....+..|+.+.|.|.+.|.|.|.+.|++ ++..+...... .........++.+.+. ++..+|.|.|+|.|.|
T Consensus 16 p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~Y~C~a~N 93 (117)
T 2v9t_A 16 PSDLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVETDKDD-PRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARN 93 (117)
T ss_dssp CCCEEECTTCCEEECCEEEEESCCEEEEEE-TTEECCCTTTC-SSCSEEECTTSCEEESSCCCBTTBCSSCEEEEEEEEE
T ss_pred CCCEEEcCCCcEEEEEECCccCCCeEEEEE-CCEeccccCCC-CcceeEEecCCcEEEEEEEeCCCCcCcCEEEEEEEEe
Confidence 345678899999999999999999999999 55444321110 0111122223334433 4478999999999999
Q ss_pred CCCCCccceEEEEEEee
Q psy7941 220 GVPPTVSKRLMLHVHCT 236 (238)
Q Consensus 220 ~~g~~~~~~~~l~V~~~ 236 (238)
..|...+..+.|.|..+
T Consensus 94 ~~G~~~s~~~~l~~~~~ 110 (117)
T 2v9t_A 94 YLGEAVSHDASLEVAAA 110 (117)
T ss_dssp TTEEEECCCEEEEEC--
T ss_pred CccceEeeeEEEEhhhh
Confidence 99988788888888653
No 350
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=3.5e-13 Score=84.82 Aligned_cols=81 Identities=21% Similarity=0.438 Sum_probs=61.2
Q ss_pred CccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe
Q psy7941 5 RGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI 84 (238)
Q Consensus 5 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~ 84 (238)
...+|.|...+..+.+.+|+++.|.|.+.. .|.+.+.|++++..+...
T Consensus 8 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g--------------------------~p~p~v~W~~~g~~~~~~------ 55 (99)
T 2yr3_A 8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVRG--------------------------TPVPRITWLLNGQPIQYA------ 55 (99)
T ss_dssp CCEEEEEEECCCCEEECTTCCEEEECEEEE--------------------------ESCCCCEEEESSSBCSSC------
T ss_pred cccCCceeecCCCCEEeCCCeEEEEEEEee--------------------------eCCCeEEEEECCEECccc------
Confidence 356889998899999999999999999953 346679999987654211
Q ss_pred ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
.. .. .....+|.|.+++.+|+|.|+|.+.|...
T Consensus 56 ---~~-~~---~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g 88 (99)
T 2yr3_A 56 ---RS-TC---EAGVAELHIQDALPEDHGTYTCLAENALG 88 (99)
T ss_dssp ---CC-EE---ETTEEEEEECSCCTTCCBCEEEEEECSSC
T ss_pred ---ce-Ee---eCCeEEEEECCCChhhCEEEEEEEEECCC
Confidence 11 00 12234899999999999999999987643
No 351
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D 3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Probab=99.40 E-value=4.8e-12 Score=90.51 Aligned_cols=129 Identities=16% Similarity=0.151 Sum_probs=80.3
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeeeeeEeec
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIHEHVITN 86 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~~~~~~ 86 (238)
+.+ +..+.+.+|++++|.|.+..... ...+.||++... .+...... ...
T Consensus 3 v~Q-p~~~~v~~G~~v~L~C~~s~~~~-------------------------~~~v~Wyrq~~g~~~~~l~~~~~~-~~~ 55 (206)
T 1kgc_D 3 TTQ-PNSMESNEEEPVHLPCNHSTISG-------------------------TDYIHWYRQLPSQGPEYVIHGLTS-NVN 55 (206)
T ss_dssp EEC-CSEEEEETTSCEEEEEEESCCCT-------------------------TCCEEEEEECTTSCCEEEEEESSS-SEE
T ss_pred EEC-CCeEEEcCCCCEEEEEEEcCCCC-------------------------CccEEEEEECCCCCcEEEEEECCC-Ccc
Confidence 345 77889999999999999964111 125999986421 11111111 112
Q ss_pred CccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCC-------CcceeeEEEEEcCCcccccccCCceee--cCCCcE
Q psy7941 87 NARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNP-------MTKQMAFLEVVIPPDISSEETSGDMMV--PEGGSA 156 (238)
Q Consensus 87 ~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-------~~~~~~~l~v~~~~~~~~~~~~~~~~~--~~g~~~ 156 (238)
.+||.+.. .....++|.|.+++.+|+|.|+|.+.+.. .....+.|.|...+.... ..+.+ .....+
T Consensus 56 ~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~----P~V~~~~~~~~~v 131 (206)
T 1kgc_D 56 NRMASLAIAEDRKSSTLILHRATLRDAAVYYCILPLAGGTSYGKLTFGQGTILTVHPNIQNPD----PAVYQLRDSKSSD 131 (206)
T ss_dssp CSSEEEEECTTSSEEEEEESSCCGGGCEEEEEECCCCSTTCCCCCCCCCCEEEEEECCCSSCC----CEEEECCCCTTCC
T ss_pred CCCEEEEEcCCCCEEEEEECCCCcccCccEEEEEecccCCCcccceECCCEEEEEeCCCCCCC----CeEEeecCCCCCe
Confidence 67888775 34467899999999999999999986521 111334677764321100 00111 112478
Q ss_pred EEEEEEcc-ccCCeE
Q psy7941 157 KLVCKAKG-YPTPKI 170 (238)
Q Consensus 157 ~l~C~~~~-~p~~~~ 170 (238)
.|.|.+.+ +|.+.+
T Consensus 132 ~L~C~~~g~~P~~~V 146 (206)
T 1kgc_D 132 KSVCLFTDFDSQTNV 146 (206)
T ss_dssp CEEEEEESCCTTCCC
T ss_pred EEEEEeeceeccccc
Confidence 99999987 788876
No 352
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=99.39 E-value=1.5e-13 Score=87.64 Aligned_cols=83 Identities=23% Similarity=0.464 Sum_probs=62.9
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEE--EeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS--VESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
+....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+... ...... .....|.|.++..+|+|.|+|.|.|..|
T Consensus 21 p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~-g~~l~~~-----~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 94 (106)
T 1nct_A 21 PRSMTVYEGESARFSCDTDGEPVPTVTWLRK-GQVLSTS-----ARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEG 94 (106)
T ss_dssp CCCEEESSSSCEECCEEEECSSCCBCCBCSS-SSCCTTC-----SSEEEEECSSEEEEEECCCCSSCCSEEEECCBCSSC
T ss_pred CCCEEEeCCCcEEEEEEEEEcCCCEEEEEEC-CEECCCC-----CCEEEEECCCEEEEEECcCCchhCEEEEEEEEeCCC
Confidence 4456789999999999999999999999994 4333211 011111 1145899999999999999999999999
Q ss_pred CCccceEEEEEE
Q psy7941 223 PTVSKRLMLHVH 234 (238)
Q Consensus 223 ~~~~~~~~l~V~ 234 (238)
. .+.++.|.|+
T Consensus 95 ~-~~~~~~l~V~ 105 (106)
T 1nct_A 95 K-QEAEFTLTIQ 105 (106)
T ss_dssp B-CCEEEEEEEC
T ss_pred e-EEEEEEEEEE
Confidence 5 4788888774
No 353
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}
Probab=99.39 E-value=1.6e-12 Score=80.40 Aligned_cols=73 Identities=16% Similarity=0.266 Sum_probs=57.8
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
.++.|...|....+.+|+++.|.|.+. +.|.+.+.|++++..+..
T Consensus 2 ~~~~i~~~p~~~~v~~G~~~~l~C~~~--------------------------g~p~p~i~W~~~~~~~~~--------- 46 (91)
T 3bfo_A 2 SKLQICVEPTSQKLMPGSTLVLQCVAV--------------------------GSPIPHYQWFKNELPLTH--------- 46 (91)
T ss_dssp CCCEEEECCCCEEECTTSCEEEECEEE--------------------------CSSCCEEEEEETTEECTT---------
T ss_pred CceEEEECCCccEecCCCcEEEEEEec--------------------------cCCCCEEEEEcCCeeCCc---------
Confidence 457788889899999999999999985 345678999998654321
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
.. ..+|.|.+++.+|+|.|+|.+.+...
T Consensus 47 ~~----------~~~L~i~~v~~~d~G~Y~C~a~n~~g 74 (91)
T 3bfo_A 47 ET----------KKLYMVPYVDLEHQGTYWCHVYNDRD 74 (91)
T ss_dssp CC----------SSEEEESSCCGGGCEEEEEEEECSSC
T ss_pred CC----------CCeEEECCCCHHhCEEEEEEEEcCCC
Confidence 10 11899999999999999999987644
No 354
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=99.39 E-value=8.4e-12 Score=77.82 Aligned_cols=89 Identities=21% Similarity=0.340 Sum_probs=64.4
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
...|.|...+..+.+.+|+++.|.|.+ + .|.+.+.|+|++..+.
T Consensus 6 ~~~~~~~~~~~~~~v~~G~~v~l~C~~-~--------------------------~p~~~v~W~k~~~~l~--------- 49 (95)
T 2k1m_A 6 KPVSAFSKKPRSVEVAAGSPAVFEAET-E--------------------------RAGVKVRWQRGGSDIS--------- 49 (95)
T ss_dssp CCCCCCSBCCCCEEEETTSCEEEEEEC-S--------------------------SSSCCCEEECSSSEEC---------
T ss_pred CCCCeeEeCCCcEEEeCCCcEEEEEEe-C--------------------------CCCCeEEEEECCEECC---------
Confidence 445888889999999999999999998 2 2245699999876532
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEE
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVV 134 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~ 134 (238)
...++.+... ....+|.|.+++.+|+|.|+|.+. .....+.|.|.
T Consensus 50 ~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~ag---~~~~~~~l~V~ 94 (95)
T 2k1m_A 50 ASNKYGLATE-GTRHTLTVREVGPADQGSYAVIAG---SSKVKFDLKVI 94 (95)
T ss_dssp SSTTCEEEEE-TTEEEEEESSCCTTCCSEEEEEET---TEEEEEEEEEE
T ss_pred CCCcEEEEEc-CCEEEEEEcCCCcccCEEEEEEEC---CceEEEEEEEe
Confidence 2345554432 234489999999999999999992 23344555553
No 355
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=6.1e-12 Score=81.09 Aligned_cols=84 Identities=21% Similarity=0.364 Sum_probs=61.3
Q ss_pred eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCC
Q psy7941 18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDA 97 (238)
Q Consensus 18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (238)
+.+.+|+++.|.|.+. .|.+.+.|+|++..+.. ..++.+... .
T Consensus 23 ~~~~~G~~v~L~C~~~---------------------------~p~~~v~W~k~g~~~~~---------~~~~~~~~~-~ 65 (113)
T 2cpc_A 23 VAAVRLERVVLTCELC---------------------------RPWAEVRWTKDGEEVVE---------SPALLLQKE-D 65 (113)
T ss_dssp EEEETTCCEEEEEEES---------------------------CTTCCCEEEETTEECCC---------BTTBEEEEC-S
T ss_pred EEEEcCCeEEEEEEec---------------------------CCCCeEEEEECCEECcc---------CCCEEEEEC-C
Confidence 6788999999999984 23557999998765322 234444332 2
Q ss_pred CeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccc
Q psy7941 98 NTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISS 141 (238)
Q Consensus 98 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~ 141 (238)
...+|.|.+++.+|+|.|+|.+.+ ....+.|.|..+|....
T Consensus 66 ~~~~L~I~~v~~~D~G~Y~C~a~n---~~~~~~l~V~~~p~~~~ 106 (113)
T 2cpc_A 66 TVRRLVLPAVQLEDSGEYLCEIDD---ESASFTVTVTEPPVRII 106 (113)
T ss_dssp SEEEEEESSCCTTTCEEEEEESSS---CEEEEEEEEECCCCCCC
T ss_pred CEEEEEECCCCcccCEEEEEEEec---CcEEEEEEEecCCchhc
Confidence 233899999999999999999976 45677788888776543
No 356
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I immune system; HET: NAG; 2.89A {Mus musculus}
Probab=99.39 E-value=1.6e-12 Score=93.64 Aligned_cols=134 Identities=16% Similarity=0.273 Sum_probs=85.5
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--e--eeeeeeeeEeec
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--K--AVLAIHEHVITN 86 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~--~~~~~~~~~~~~ 86 (238)
+.+.+..+.+.+|+++.|+|.+... ...+.|||... . .+....... ..
T Consensus 4 V~Q~p~~v~v~~G~sVtL~C~~s~~---------------------------~~~v~Wyrq~pg~~~~~l~~~~~~~-~~ 55 (229)
T 3mbe_C 4 VEQNPPALSLYEGADSGLRCNFSTT---------------------------MKSVQWFQQNHRGRLITLFYLAQGT-KE 55 (229)
T ss_dssp EEEECSEEEEETTCCEEEEEEESSC---------------------------CSCEEEEEECSSSCBCCCEEESSEE-EE
T ss_pred EEEcCCEEEEEcCCCEEEEEEEeCC---------------------------CcEEEEEEECCCCCcEEEEEeCCCC-cc
Confidence 4567888999999999999999643 12499998532 1 111111111 33
Q ss_pred CccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCC-C----cceeeEEEEEcC---CcccccccCCceeecCCCcEE
Q psy7941 87 NARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNP-M----TKQMAFLEVVIP---PDISSEETSGDMMVPEGGSAK 157 (238)
Q Consensus 87 ~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~----~~~~~~l~v~~~---~~~~~~~~~~~~~~~~g~~~~ 157 (238)
.+||.... .....++|+|.+++.+|+|.|+|.+.... . -...+.|.|... +.+.+.. .......+.
T Consensus 56 ~~Rfs~~~~~~~~~~sLtI~~lq~~DSG~Y~Ca~~~~~~~~~~~fG~GT~L~V~~~~~~p~P~Vf~-----~~~~~~~vt 130 (229)
T 3mbe_C 56 NGRLKSTFNSKERYSTLHIKDAQLEDSGTYFCAAEDGGSGNKLIFGTGTLLSVKPNIQNPEPAVYQ-----LKDPRSQDS 130 (229)
T ss_dssp ETTEEEEEETTTTEEEEEECSCCSTTCBEEEEEEECSSSTTCEEECCCCEEEEECCCSSCCCEEEE-----EECTTCTTC
T ss_pred CCCEEEEECCCCCEEEEEEECCcccCCCCEEEEEEeCCCcccceeCCCEEEEEecccCCCCCEEEE-----ccCCCCCEE
Confidence 56787764 44577899999999999999999986422 1 112345777642 2111110 011123489
Q ss_pred EEEEEcc-ccCCeEEEEeCCC
Q psy7941 158 LVCKAKG-YPTPKITWRREDN 177 (238)
Q Consensus 158 l~C~~~~-~p~~~~~W~~~~~ 177 (238)
|.|.+.+ +|.-.+.|.+++.
T Consensus 131 l~Cl~~gf~P~i~v~~~~~~~ 151 (229)
T 3mbe_C 131 TLCLFTDFDSQINVPKTMESG 151 (229)
T ss_dssp EEEEEESCCSSSCCCCCCSSS
T ss_pred EEEEccccCCceEeEeeccCc
Confidence 9999988 5644899999444
No 357
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.39 E-value=7.7e-13 Score=81.74 Aligned_cols=66 Identities=21% Similarity=0.406 Sum_probs=48.3
Q ss_pred eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeC
Q psy7941 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANG 220 (238)
Q Consensus 148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~ 220 (238)
+.+.+|+.+.|.|.+.+ |.+.+.|++ ++..+.... ....... ...|.|.++..+|+|.|+|.|.|.
T Consensus 16 v~~~~g~~v~l~C~v~~-p~~~v~W~k-~g~~i~~~~-----~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 83 (91)
T 2lvc_A 16 VHAITSECVMLACEVDR-EDAPVRWYK-DGQEVEESD-----FVVLENEGPHRRLVLPATQPSDGGEFQCVAGDE 83 (91)
T ss_dssp EECCTTCCEEEEEECSC-TTSCCEEEE-TTSCCCCCS-----SCEEEEETTEEEEEESSCCGGGCSEEEEECSSC
T ss_pred EEEECCCcEEEEEEECC-CCcEEEEEE-CCEEeeeee-----eeeEEecCCeEEEEeCCCChhhcEEEEEEEcce
Confidence 45678999999999866 888999999 555543221 1111222 236999999999999999999764
No 358
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=3.1e-13 Score=85.15 Aligned_cols=83 Identities=14% Similarity=0.345 Sum_probs=62.6
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
+..+.+.+|+.+.|.|.+.+.| |.+.|+++ +..+... .. ....+..|.|.++..+|.|.|+|.|.|..|.
T Consensus 10 p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~-g~~~~~~------~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~- 79 (99)
T 2cr3_A 10 VESFLVHPGDLLQLRCRLRDDV-QSINWLRD-GVQLAES------NR-TRITGEEVEVQDSVPADSGLYACVTSSPSGS- 79 (99)
T ss_dssp EEECCBCTTSCEEEECCCCSSC-CEEEEEES-SSBCCCC------SS-EEECSSEEEETTCCTTTCEEEEEEEEETTEE-
T ss_pred CcCeEEeCCCcEEEEEEecCCC-CeEEEEEC-CEECCCC------Cc-EEEECCEEEEccCCHHHCEEEEEEEEeCCce-
Confidence 3345678899999999999876 79999994 4433211 11 1223568999999999999999999999994
Q ss_pred ccceEEEEEEeec
Q psy7941 225 VSKRLMLHVHCTY 237 (238)
Q Consensus 225 ~~~~~~l~V~~~p 237 (238)
....+.|.|..+|
T Consensus 80 ~~~~~~l~V~~~~ 92 (99)
T 2cr3_A 80 DTTYFSVNVSDAL 92 (99)
T ss_dssp EEEEEEECBCSCC
T ss_pred EEEEEEEEEecCC
Confidence 4778888877654
No 359
>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}
Probab=99.38 E-value=1.3e-12 Score=81.50 Aligned_cols=82 Identities=24% Similarity=0.379 Sum_probs=62.7
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
+....+.+|+.+.|.|.+.+ .|.+.|++ ++..+... .. ....+..|.|.++..+|+|.|+|.|.|..| .
T Consensus 8 p~~~~v~~G~~~~l~C~~~~--~p~v~W~k-~g~~~~~~------~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g-~ 76 (95)
T 4hwu_A 8 PEAYVVAPGESLELQCMLKD--AAVISWTK-DGVHLGPN------NR-TVLIGEYLQIKGATPRDSGLYACTAARTVD-S 76 (95)
T ss_dssp CEEEEECTTSCEEEECCCCT--TCEEEEEE-TTEEECCC------SS-EEEETTEEEECSCCGGGCEEEEEEEECSSC-E
T ss_pred CCcEEECCCCEEEEEEEeCC--CCEEEEEE-CCEECCCC------ce-EEEeCCEEEECcCCcccCEEEEEEEccCCC-c
Confidence 34467889999999999887 57999999 55544321 11 223456899999999999999999999999 4
Q ss_pred ccceEEEEEEeec
Q psy7941 225 VSKRLMLHVHCTY 237 (238)
Q Consensus 225 ~~~~~~l~V~~~p 237 (238)
.+..+.|.|..++
T Consensus 77 ~~~~~~l~V~~~~ 89 (95)
T 4hwu_A 77 ETWIFMVNVTDAA 89 (95)
T ss_dssp EEEEEEEEECCC-
T ss_pred EEEEEEEEEeCCc
Confidence 4788888887654
No 360
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.38 E-value=8.8e-11 Score=81.83 Aligned_cols=163 Identities=11% Similarity=0.128 Sum_probs=100.9
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccE
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARL 90 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 90 (238)
+...|+...|..|+++.|.|.+.-. .|. .+.|-..-.+.. .
T Consensus 5 v~v~P~~~~V~~G~S~~l~Cs~~c~-------------------------~p~-~~glet~l~~~~-------~------ 45 (192)
T 1zxq_A 5 VHVRPKKLAVEPKGSLEVNCSTTCN-------------------------QPE-VGGLETSLNKIL-------L------ 45 (192)
T ss_dssp EEEESSEEEECTTEEEEEEEEESCS-------------------------SCS-EEEEECSSEEEE-------E------
T ss_pred EEEeCCCcEEeCCCcEEEEEECCCC-------------------------Ccc-ccccccccCceE-------E------
Confidence 3456778889999999999998521 111 133333211110 0
Q ss_pred EEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc-ccCC
Q psy7941 91 SVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTP 168 (238)
Q Consensus 91 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~ 168 (238)
....+-..|.|.+++ |.|.|.|.+... ......+.+.|+.+|........ ...+..|+.++|.|.+.+ +|..
T Consensus 46 ---~~g~~w~~l~l~~vs--~~g~~~C~~~c~~~~~~~~~~itVy~~P~~v~i~~~-p~~~~~G~~~tL~C~v~~v~P~~ 119 (192)
T 1zxq_A 46 ---DEQAQWKHYLVSNIS--HDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQ-PTLVAVGKSFTIECRVPTVEPLD 119 (192)
T ss_dssp ---EEETTEEEEEEEEEC--SCEEEEEEEEETTEEEEEEEEEEECBCCCCCEEEEE-SSEECTTSEEEEEEEECSCBCGG
T ss_pred ---cCCCCeEEEEEeccc--cCCeeEEEEECCCcceEEEEEEEEEeCCCCceEccC-CccccCCCcEEEEEEeCCeECCC
Confidence 111122278999998 788999999765 33455677888887765433211 124788999999999976 7876
Q ss_pred --eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCe-EEEEEeeeCC
Q psy7941 169 --KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG-AYQCIAANGV 221 (238)
Q Consensus 169 --~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~ 221 (238)
.+.|++ +...+......+...... ....+....+.++|.| +|+|.|.-..
T Consensus 120 ~L~v~llr-G~~~l~~~~f~~~~~~~~--~~tv~~~~~~~r~D~g~~~sC~A~L~L 172 (192)
T 1zxq_A 120 SLTLFLFR-GNETLHYETFGKAAPAPQ--EATATFNSTADREDGHRNFSCLAVLDL 172 (192)
T ss_dssp GEEEEEEE-TTEEEEEEECCSSTTCTT--CEEEEEEEECCGGGGGCEEEEEEEEEC
T ss_pred CcEEEEEc-CCEEeeecccccccCcCc--ceEEEEEEecchhhCCceEEEEEEecC
Confidence 489999 666654443211110000 0112334567788888 9999999666
No 361
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=6.8e-12 Score=80.26 Aligned_cols=102 Identities=16% Similarity=0.213 Sum_probs=69.8
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-eeEe
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-EHVI 84 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~ 84 (238)
..+|.|..++.++.+.+|+++.|.|.++. .+.+.|+|++..+..... ....
T Consensus 6 ~p~~~~~~~l~d~~v~eG~~a~f~C~vs~----------------------------~p~v~W~knG~~l~~~~~~~~~~ 57 (112)
T 2e6q_A 6 SGTARLVAGLEDVQVYDGEDAVFSLDLST----------------------------IIQGTWFLNGEELKSNEPEGQVE 57 (112)
T ss_dssp CSCCCEEECCCCEEEETTCEEEEEEEESS----------------------------CCCCEEEESSCBCCSSCCCTTSC
T ss_pred cCCcEEecCCCCeEEcCCCcEEEEEEECC----------------------------CCeEEEEECCEECccCccccccc
Confidence 45688999999999999999999999963 345999998876532110 0000
Q ss_pred ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCc
Q psy7941 85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPD 138 (238)
Q Consensus 85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~ 138 (238)
....|+.+... ....+|.|.+++.+|+|.|+|..-+ .....+.|.|..+|.
T Consensus 58 ~~~~r~~i~~~-g~~~~L~I~~v~~~D~G~Y~~~~~~--~~~ssA~L~V~~~p~ 108 (112)
T 2e6q_A 58 PGALRYRIEQK-GLQHRLILHAVKHQDSGALVGFSCP--GVQDSAALTIQESSG 108 (112)
T ss_dssp TTSCEEEECCB-TTEEEEEEESCCSTTCSEEEEEEET--TEEEEEEEEEECSSC
T ss_pred ccccEEEEEeC-CcEEEEEECCCCHHHCccEEEEEEC--CeeEEEEEEEeCCCc
Confidence 00015554432 2344899999999999999875433 234577899887664
No 362
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Probab=99.37 E-value=7.7e-12 Score=80.21 Aligned_cols=99 Identities=23% Similarity=0.311 Sum_probs=65.1
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE--
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV-- 83 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~-- 83 (238)
..+|.|...+....+.+|+++.|.|.+... ..+.+.+.|++++..+........
T Consensus 8 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~------------------------~~~~~~i~W~k~~~~~~~~~~~~~~~ 63 (112)
T 3so5_A 8 FPXPQITVQPETQSAIXGSDVSFTCSAASS------------------------SDSPMTFAWXXDNEALQDAEMENYAH 63 (112)
T ss_dssp CCSCEEEECCCCEEECTTCCEEEEEEEEES------------------------CCCCCEEEEEETTEECTTCEEEEEEE
T ss_pred CCCCeEEeCCCCcEEECCCCEEEEEEEecC------------------------CCCCEEEEEccCCcccccccccceee
Confidence 457888888999999999999999999642 123567999998765432111000
Q ss_pred ee-cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEE
Q psy7941 84 IT-NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEV 133 (238)
Q Consensus 84 ~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v 133 (238)
+. ..+.... ...+|.|.+++.+|+|.|+|.+.|.... +..+.|.|
T Consensus 64 ~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 111 (112)
T 3so5_A 64 LRAQGGELME-----YTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111 (112)
T ss_dssp TTGGGSSCEE-----EEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred eeccCCCccc-----cceEEEEeccccccCCeEEEEEEeCCCcEEEeEEEEEe
Confidence 00 0000000 1238999999999999999999876433 34445544
No 363
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Probab=99.37 E-value=1.3e-11 Score=80.73 Aligned_cols=101 Identities=20% Similarity=0.341 Sum_probs=63.2
Q ss_pred ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEE
Q psy7941 13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSV 92 (238)
Q Consensus 13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 92 (238)
.++..+.+.+|+++.|.|.+.... .|.+.+.|++++........ . ...+...
T Consensus 13 ~p~~~v~v~~G~~v~L~C~~~g~p------------------------~~~~~i~W~~~~~~~~~~~~---~-~~~~~~~ 64 (122)
T 3s35_X 13 SPSHGIELSVGEKLVLNCTARTEL------------------------NVGIDFNWEYPSSKHQHKKL---V-NRDLKTQ 64 (122)
T ss_dssp ESCSCEEEEETCCEEEEEEEEECT------------------------TCCCEEEEECSCTTCCHHHH---B-CCSCCEE
T ss_pred cCCCCEEEecCCeEEEEEEEEcCC------------------------CCcEEEEEECCCcccCCcee---e-eeccccc
Confidence 455667899999999999997421 23467999998764221000 0 0000000
Q ss_pred EEc--CCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccc
Q psy7941 93 THN--DANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISS 141 (238)
Q Consensus 93 ~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~ 141 (238)
... .....+|.|.+++.+|+|.|+|.+.|... ....+.|.|..+|.+..
T Consensus 65 ~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V~~~p~i~~ 116 (122)
T 3s35_X 65 SGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAF 116 (122)
T ss_dssp EETTEEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEECC--
T ss_pred cCCceeeEEEEEEECCCCcccCEEEEEEEccCCCceEEEEEEEEeccCeEEe
Confidence 000 01223899999999999999999987543 45566788887776654
No 364
>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=5.5e-13 Score=83.44 Aligned_cols=78 Identities=26% Similarity=0.544 Sum_probs=60.3
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC-C
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP-P 223 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g-~ 223 (238)
+....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+.. .....|.|.++..+|+|.|+|.+.|..+ .
T Consensus 17 p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k-~~~~~~~------------~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~ 83 (96)
T 2ens_A 17 PEGGAVAPGGTVTLTCEVPAQPSPQIHWMK-DGVPLPL------------PPSPVLILPEIGPQDQGTYSCVATHSSHGP 83 (96)
T ss_dssp STTSEECTTCEEEEECCCSSCSSCCCCCEE-SSSBCSS------------CCCSEEEEESCCTTTCEEEECEECCSSCCC
T ss_pred CCCCEEcCCCeEEEEEEEccCCCCEEEEEE-CCEECcC------------CCCCEEEECCCCcccCEEEEEEEEeCCCCc
Confidence 334568899999999999999999999999 4443321 1245799999999999999999999654 3
Q ss_pred CccceEEEEEEe
Q psy7941 224 TVSKRLMLHVHC 235 (238)
Q Consensus 224 ~~~~~~~l~V~~ 235 (238)
..+..+.|.|..
T Consensus 84 ~~s~~~~v~V~~ 95 (96)
T 2ens_A 84 QESRAVSISIIE 95 (96)
T ss_dssp EECCCEEEEECC
T ss_pred EEEEEEEEEEeC
Confidence 456677777653
No 365
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.36 E-value=3.8e-12 Score=80.69 Aligned_cols=84 Identities=19% Similarity=0.321 Sum_probs=60.5
Q ss_pred cCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCC
Q psy7941 144 TSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGV 221 (238)
Q Consensus 144 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~ 221 (238)
.+....+.+|+.+.|.|.+.+ |.+.+.|++ ++..+.... ......... ...|.|.++..+|+|.|+|.|.|
T Consensus 13 ~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k-~g~~l~~~~---~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n-- 85 (103)
T 1x44_A 13 QLEDTTAYCGERVELECEVSE-DDANVKWFK-NGEEIIPGP---KSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG-- 85 (103)
T ss_dssp CCCCEEEETTEEEEEEEECSS-SSCCCEEEE-TTEECCCST---TCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT--
T ss_pred cCCCEEEECCCCEEEEEEecC-CCCeEEEEE-CCEECCCCC---ceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC--
Confidence 345577889999999999987 778999999 555443211 001111111 24799999999999999999987
Q ss_pred CCCccceEEEEEEeec
Q psy7941 222 PPTVSKRLMLHVHCTY 237 (238)
Q Consensus 222 g~~~~~~~~l~V~~~p 237 (238)
.+.++.|.|..+|
T Consensus 86 ---~~~~~~l~V~~~p 98 (103)
T 1x44_A 86 ---GQSSAKLSVDLKS 98 (103)
T ss_dssp ---EEEEEEEEEECCC
T ss_pred ---CcEEEEEEEeCCC
Confidence 2667788888766
No 366
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.36 E-value=1.3e-11 Score=78.29 Aligned_cols=79 Identities=19% Similarity=0.315 Sum_probs=58.8
Q ss_pred ccccceeccCce-eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe
Q psy7941 6 GFEPDFLYPLEN-VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI 84 (238)
Q Consensus 6 ~~~p~~~~~~~~-~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~ 84 (238)
..+|.|...+.. +.+.+|+++.|.|.+. .|.+.+.|+|++..+..
T Consensus 13 ~~~p~f~~~~~~~~~v~~G~~v~L~C~~~---------------------------~p~~~v~W~k~g~~l~~------- 58 (104)
T 1pd6_A 13 KKSTAFQKKLEPAYQVSKGHKIRLTVELA---------------------------DHDAEVKWLKNGQEIQM------- 58 (104)
T ss_dssp STTSSCSEECCSEEEEETTSCEEEEEECS---------------------------SSSSCCEEEESSSEECC-------
T ss_pred cCCCEEEEcCCCcEEEecCCCEEEEEEEc---------------------------CCCCEEEEEECCEECCC-------
Confidence 457888877666 8899999999999983 23556999998765432
Q ss_pred ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941 85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN 120 (238)
Q Consensus 85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 120 (238)
...++.+... ....+|.|.+++.+|+|.|+|.+.
T Consensus 59 -~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~ 92 (104)
T 1pd6_A 59 -SGSKYIFESI-GAKRTLTISQCSLADDAAYQCVVG 92 (104)
T ss_dssp -CSSSSEEEEE-TTEEEEEECSCSSSSCEEEEEEET
T ss_pred -CCCeEEEEec-CCEEEEEECCCCcccCEEEEEEEC
Confidence 1135554432 234589999999999999999993
No 367
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Probab=99.35 E-value=6.9e-12 Score=89.11 Aligned_cols=137 Identities=15% Similarity=0.264 Sum_probs=83.8
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--e--eeeeeeeeEee
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--K--AVLAIHEHVIT 85 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~--~~~~~~~~~~~ 85 (238)
.+.+.+..+.+.+|+++.|.|.+.... ...+.|||+.. . .+.........
T Consensus 4 ~V~Q~p~~v~v~~G~sVtL~C~~s~~~--------------------------~~~v~Wyrq~~g~~~~~li~~~~~~~~ 57 (208)
T 4ei6_A 4 KVQQSPESLSVPEGGMASLNCTSSDRN--------------------------FQYFWWYRQHSGEGPKALMSIFSDGDK 57 (208)
T ss_dssp CEEEECSEEEEETTCCEECEEEECCTT--------------------------EEEEEEEEECTTSCCEEEEECCSSEEE
T ss_pred eEEEeCCEEEEECCCCEEEEEEEcCCC--------------------------CceEEEEEeCCCCCcEEEEEECCCCcc
Confidence 456778889999999999999996432 12489998632 1 11111111111
Q ss_pred cCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCC-----C-cceeeEEEEEcC---CcccccccCCceeecCCCc
Q psy7941 86 NNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNP-----M-TKQMAFLEVVIP---PDISSEETSGDMMVPEGGS 155 (238)
Q Consensus 86 ~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-----~-~~~~~~l~v~~~---~~~~~~~~~~~~~~~~g~~ 155 (238)
..+||.... .....++|+|.+++.+|+|.|+|.+.... . -...+.|.|... +.+.+.. .. .....
T Consensus 58 ~~~Rfs~~~~~~~~~~sL~I~~lq~~DsG~Y~Ca~~~~~~~~~~~~fG~GT~L~V~~~~~~~~PsVf~----l~-~~~~~ 132 (208)
T 4ei6_A 58 KEGRFTAHLNKASLHVSLHIRDSQPSDSALYFCAASEQNNYAQGLTFGLGTRVSVFPYIQNPDPAVYQ----LR-DSKSS 132 (208)
T ss_dssp EETTEEEEEBTTTTBC-CEECSCCGGGCEEEEEEEEECCSSCCCCEECCCEEEEEECCCSSCCCEEEE----EE-BSSCT
T ss_pred cCCcEEEEEcCCCCEEEEEEEeCcccCCCcEEEEEecCCCccccccCCCCEEEEEeCcccCCCCEEEE----cc-cCCCC
Confidence 356888764 34467899999999999999999985321 1 122345777642 1111110 00 11123
Q ss_pred EEEEEEEcc-ccCCeEEEEeCCC
Q psy7941 156 AKLVCKAKG-YPTPKITWRREDN 177 (238)
Q Consensus 156 ~~l~C~~~~-~p~~~~~W~~~~~ 177 (238)
+.|.|.+.+ +|.-++.|.++++
T Consensus 133 ~tl~Cl~~~f~P~i~v~~~~~~~ 155 (208)
T 4ei6_A 133 DKSVCLFTDFDSQTNVSQSKDSD 155 (208)
T ss_dssp TCEEEEEESCCTTCCCCCCSSTT
T ss_pred ceEEEEeeccCCceEeeecccCc
Confidence 679999988 5634799999544
No 368
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Probab=99.34 E-value=8.2e-13 Score=83.26 Aligned_cols=83 Identities=18% Similarity=0.330 Sum_probs=57.1
Q ss_pred cccceeccC----ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee
Q psy7941 7 FEPDFLYPL----ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH 82 (238)
Q Consensus 7 ~~p~~~~~~----~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~ 82 (238)
.+|.|...+ ..+.+.+|+++.|.|.+.+ .|.+.+.|++++..+.....
T Consensus 3 ~~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g--------------------------~p~p~v~W~~~~~~~~~~~~-- 54 (100)
T 3caf_A 3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGG--------------------------NPMPTMRWLKNGKEFKQEHR-- 54 (100)
T ss_dssp EEEEESCTTTTSCCEEEECTTCCEEEECCEEE--------------------------ESCCEEEEEETTEECCGGGS--
T ss_pred CCCEeEcCccccccEEEecCCCEEEEEEEccc--------------------------cCCCEEEEEECCEEcccccc--
Confidence 467777544 5778999999999999853 34667999998765422100
Q ss_pred EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
...+.... ...+|.|.+++.+|+|.|+|.+.|...
T Consensus 55 ----~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~a~N~~g 89 (100)
T 3caf_A 55 ----IGGYKVRN---QHWSLIMESVVPSDKGNYTCVVENEYG 89 (100)
T ss_dssp ----TTCCEEEG---GGTEEEECSCCGGGCEEEEEEEEETTE
T ss_pred ----cccEEEec---CeEEEEEccCCcCCCEEEEEEEEeCCC
Confidence 01112211 123899999999999999999987543
No 369
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}
Probab=99.33 E-value=5.3e-12 Score=81.40 Aligned_cols=97 Identities=18% Similarity=0.301 Sum_probs=67.2
Q ss_pred ceeeEEEEEcCC-cccccccCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeec---eEE
Q psy7941 126 KQMAFLEVVIPP-DISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE---VLS 201 (238)
Q Consensus 126 ~~~~~l~v~~~~-~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~ 201 (238)
...+.|.|...| .+.. .+....+.+|+.+.|.|.+.+. |.+.|++ ++..+... .......++ .|.
T Consensus 8 ~~~~~l~V~~~pp~~~~--~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k-~~~~l~~~------~~~~~~~~~~~~~L~ 76 (113)
T 2edh_A 8 RTSAMLTVRALPIKFTE--GLRNEEATEGATAVLRCELSKM--APVEWWK-GHETLRDG------DRHSLRQDGARCELQ 76 (113)
T ss_dssp CCCCCCCCCCSCCCEEE--CCCCCEECTTSCEEEEEEESSC--CCCEEEE-SSSBCCCS------SSEEEEEETTEEEEE
T ss_pred cEEEEEEEEcCCCcccc--cCCceEEeCCCeEEEEEEECCC--CcEEEEE-CCEECCCC------CcEEEEECCCEEEEE
Confidence 344556666444 4432 3445678999999999999775 7899999 44443211 122222233 799
Q ss_pred EEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeecC
Q psy7941 202 LTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTYL 238 (238)
Q Consensus 202 i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p~ 238 (238)
|.++..+|+|.|+|.| | ..+.++.|.|..+|.
T Consensus 77 I~~v~~~D~G~Y~C~a----~-~~~~~~~l~V~~~p~ 108 (113)
T 2edh_A 77 IRGLVAEDAGEYLCMC----G-KERTSAMLTVRAMPS 108 (113)
T ss_dssp ECSCCSTTCEEEEEEE----T-TEEEEEEEEECCCCC
T ss_pred ECCCChhhCEEEEEEe----C-CCCEEEEEEEeCCCC
Confidence 9999999999999999 4 447788899988773
No 370
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Probab=99.33 E-value=1.6e-11 Score=76.97 Aligned_cols=86 Identities=23% Similarity=0.375 Sum_probs=58.2
Q ss_pred cccee-ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 8 EPDFL-YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 8 ~p~~~-~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
+|.+. ..+..+.+.+|+++.|.|.+.. +.|.+.+.|++++.....
T Consensus 9 ~~~~~~~~~~~~~v~~G~~v~l~C~~~~-------------------------~~p~~~v~W~k~~~~~~~--------- 54 (98)
T 1gl4_B 9 PIMVTVEEQRSQSVRPGADVTFICTAKS-------------------------KSPAYTLVWTRLHNGKLP--------- 54 (98)
T ss_dssp CEEEEECSCCEEEECTTCCEEEEEEEEE-------------------------SSSCCEEEEEEGGGBCCC---------
T ss_pred CcEEEEeCCCCeEEecCCCEEEEEeCCC-------------------------CCCCcEEEEEeCCCCCCC---------
Confidence 34443 5567889999999999999962 234667999997543211
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEE
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEV 133 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v 133 (238)
.+.. .... +|.|.+++.+|+|.|+|.+.|... ....+.|.|
T Consensus 55 -~~~~-~~~~----~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V 96 (98)
T 1gl4_B 55 -SRAM-DFNG----ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96 (98)
T ss_dssp -TTEE-EETT----EEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred -ceee-cCCC----EEEEeCCChhhCEEEEEEecCCCCccccEEEEEE
Confidence 1111 1111 899999999999999999987633 333444544
No 371
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI, thick filament, immunoglobulin domain; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.32 E-value=5.3e-12 Score=84.26 Aligned_cols=83 Identities=17% Similarity=0.327 Sum_probs=57.0
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceee------------------
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAV------------------ 76 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~------------------ 76 (238)
+..+.+.+|+++.|.|.+. +.|.|.+.|+|++....
T Consensus 25 p~~~~v~~G~~v~L~C~~~--------------------------G~P~P~i~W~k~g~~~~~~~~~~~~~~~~~~~~~~ 78 (139)
T 1gxe_A 25 PDTIVVVAGNKLRLDVPIS--------------------------GDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSD 78 (139)
T ss_dssp CCEEEESSSSCCCCEEECC--------------------------SBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSS
T ss_pred CCCEEEeCCCeEEEEEEEE--------------------------EcCCCeEEEEECCcccccccccccccccccccccc
Confidence 6788999999999999984 45688899999872100
Q ss_pred -eeeeeeEe-ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 77 -LAIHEHVI-TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 77 -~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
.......+ ....++.+... ....+|.|.+++.+|+|.|+|.+.|..+
T Consensus 79 ~~~~~~~~l~~~~~r~~i~~~-~~~s~L~I~~v~~~DsG~Y~C~A~N~~G 127 (139)
T 1gxe_A 79 EWVFDKKLLCETEGRVRVETT-KDRSIFTVEGAEKEDEGVYTVTVKNPVG 127 (139)
T ss_dssp CCCCSCCCCCSCSSSCEEEEE-TTEEEEECSCCCTTTCEEEEEEEECSSC
T ss_pred cccccceeecCCCCeEEEEeC-CCEEEEEECCCCcccCEEEEEEEEeCCc
Confidence 00000011 12345555432 2345899999999999999999988644
No 372
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D 2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D
Probab=99.32 E-value=3.6e-11 Score=86.43 Aligned_cols=128 Identities=14% Similarity=0.195 Sum_probs=80.8
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeee-eeEee
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIH-EHVIT 85 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~-~~~~~ 85 (238)
+...+..+.+.+|++++|.|.+. .. ...+.||+.... .+.... .....
T Consensus 4 v~Q~p~~v~v~~G~~vtL~C~~~-~~--------------------------~~~v~Wyrq~~g~~~~~li~~~~~~~~~ 56 (215)
T 1oga_D 4 LEQSPQFLSIQEGENLTVYCNSS-SV--------------------------FSSLQWYRQEPGEGPVLLVTVVTGGEVK 56 (215)
T ss_dssp CEEECSEEEEETTCCEEEEEECS-SC--------------------------CSCEEEEEECTTSCCEEEEEECSTTCEE
T ss_pred EEECCCEEEEecCCCEEEEEEEc-CC--------------------------CceEEEEEeCCCCCcEEEEEEcCCCCcc
Confidence 34567888999999999999983 21 234999986421 111111 11112
Q ss_pred cCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCCC---cceeeEEEEEcCCc---ccccccCCceeecCCCcEEE
Q psy7941 86 NNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPM---TKQMAFLEVVIPPD---ISSEETSGDMMVPEGGSAKL 158 (238)
Q Consensus 86 ~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l~v~~~~~---~~~~~~~~~~~~~~g~~~~l 158 (238)
..+||.+... ....++|.|.+++.+|+|.|+|.+..... ....+.|.|...+. +.+. ........+.|
T Consensus 57 ~~~Rfs~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~fg~gt~L~V~~~~~~~~P~V~-----~~~~~~~~vtL 131 (215)
T 1oga_D 57 KLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGAGSQGNLIFGKGTKLSVKPNIQNPDPAVY-----QLRDSKSSDKS 131 (215)
T ss_dssp EETTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEECTTSSEEECCCEEEEEECCCSSCCCEEE-----EEEBSSSSSCE
T ss_pred cCCCEEEEEcCCCCEEEEEEccCCcccCceEEEEEecccccceeCCCEEEEEeccCCCcCCEEE-----EcCCCCCCeEE
Confidence 3568887653 44678999999999999999999965311 11234677764321 1110 00112347899
Q ss_pred EEEEcc-ccCCeE
Q psy7941 159 VCKAKG-YPTPKI 170 (238)
Q Consensus 159 ~C~~~~-~p~~~~ 170 (238)
.|.+.| +|.|.+
T Consensus 132 ~C~~~gf~P~p~v 144 (215)
T 1oga_D 132 VCLFTDFDSQTNV 144 (215)
T ss_dssp EEEEESCCTTCCC
T ss_pred EEEccccccCccc
Confidence 999988 788866
No 373
>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1
Probab=99.32 E-value=2.3e-11 Score=77.69 Aligned_cols=86 Identities=19% Similarity=0.326 Sum_probs=60.0
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeeee-eeEe
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAIH-EHVI 84 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~~-~~~~ 84 (238)
.+...|..+.+.+|+++.|.|.+.. .|.+.+.|+++... . +.... ....
T Consensus 3 ~v~q~p~~~~~~~G~~v~L~C~~~~--------------------------~~~~~v~W~r~~~~~~~~~l~~~~~~~~~ 56 (108)
T 1jhl_L 3 ELTQSPSYLVASPGETITINCRASK--------------------------SISKSLAWYQEKPGKTNNLLIYSGSTLQS 56 (108)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESS--------------------------CCTTCEEEEEECTTSCCEEEEETTTEECT
T ss_pred ceeccCCeeEEcCCCCEEEEeEECC--------------------------CCCceEEEEEECCCCCCEEEEEcCCCcCC
Confidence 4566788899999999999999963 23456999996421 1 11100 0000
Q ss_pred ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
....|+.+.. ....++|.|.+++.+|+|.|+|.+.+.
T Consensus 57 ~~~~r~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~n~ 93 (108)
T 1jhl_L 57 GIPSRFSGSG-SGTDFTLTISSLEPEDFAMYICQQHNE 93 (108)
T ss_dssp TCCTTEEEEE-SSSEEEEEECSCCTTCCSEEEEEECSS
T ss_pred CCCceEEEEe-cCCEEEEEECCCCHHHCEEEEEEEccC
Confidence 1246777654 446679999999999999999999764
No 374
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.32 E-value=5e-12 Score=89.09 Aligned_cols=95 Identities=26% Similarity=0.439 Sum_probs=69.9
Q ss_pred CCcccccccCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEE
Q psy7941 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQC 215 (238)
Q Consensus 136 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C 215 (238)
+|.+.....+....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+... ...........|.|.++..+|.|.|+|
T Consensus 2 pP~i~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G~Y~C 75 (192)
T 2va4_A 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR-NGKLIEEN-----EKYILKGSNTELTVRNIINSDGGPYVC 75 (192)
T ss_dssp CCEEECSCCEEEEETTSCCCEEEECEEECSSCCEEEEEE-TTEECCCS-----SSEEEETTTTEEEECSCCGGGCEEEEE
T ss_pred CCcccCCCCCcEEEEecCCCEEEEEeeccCCCCeEEEEE-CCeEcCCC-----ccEEEeCCeeEEEEecCChhcCcEEEE
Confidence 444444434445678899999999999999999999999 55444321 111222334579999999999999999
Q ss_pred EeeeCCCCCccceEEEEEEeec
Q psy7941 216 IAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 216 ~~~n~~g~~~~~~~~l~V~~~p 237 (238)
.+.|..|.. ...+.|.|..+|
T Consensus 76 ~~~~~~~~~-~~~~~l~V~~~p 96 (192)
T 2va4_A 76 RATNKAGED-EKQAFLQVFVQP 96 (192)
T ss_dssp EEEETTEEE-EEEEEEEEEEEE
T ss_pred EEEcccccc-ceEEEEEEEccC
Confidence 999998843 677788887766
No 375
>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}
Probab=99.32 E-value=1.4e-11 Score=76.84 Aligned_cols=82 Identities=20% Similarity=0.329 Sum_probs=57.4
Q ss_pred eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEE
Q psy7941 12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLS 91 (238)
Q Consensus 12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 91 (238)
+.++..+.+.+|+++.|.|.+.. .+.+.|++++..+. ...++.
T Consensus 5 ~~~p~~~~v~~G~~~~l~C~~~~----------------------------~p~v~W~k~g~~~~---------~~~~~~ 47 (95)
T 4hwu_A 5 GSQPEAYVVAPGESLELQCMLKD----------------------------AAVISWTKDGVHLG---------PNNRTV 47 (95)
T ss_dssp ---CEEEEECTTSCEEEECCCCT----------------------------TCEEEEEETTEEEC---------CCSSEE
T ss_pred ccCCCcEEECCCCEEEEEEEeCC----------------------------CCEEEEEECCEECC---------CCceEE
Confidence 34677888999999999999853 34699999876532 233444
Q ss_pred EEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEc
Q psy7941 92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVI 135 (238)
Q Consensus 92 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~ 135 (238)
.... +|.|.+++.+|+|.|+|.+.+... ....+.+.|..
T Consensus 48 ~~~~-----~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~ 87 (95)
T 4hwu_A 48 LIGE-----YLQIKGATPRDSGLYACTAARTVDSETWIFMVNVTD 87 (95)
T ss_dssp EETT-----EEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECC
T ss_pred EeCC-----EEEECcCCcccCEEEEEEEccCCCcEEEEEEEEEeC
Confidence 4322 899999999999999999987543 33344455543
No 376
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C* 3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C* 3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C* 3sdc_C* ...
Probab=99.32 E-value=2.5e-11 Score=88.08 Aligned_cols=133 Identities=18% Similarity=0.216 Sum_probs=83.4
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeee-eeEee
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIH-EHVIT 85 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~-~~~~~ 85 (238)
+...+..+.+.+|++++|.|.+.... ...+.||++... .+.... .....
T Consensus 4 v~Q~p~~v~v~~G~svtL~C~~s~~~--------------------------~~~v~Wyrq~~g~~~~~l~~~~~~~~~~ 57 (229)
T 2q86_A 4 VEQSPQSLVVRQGENCVLQCNYSVTP--------------------------DNHLRWYKQDTGKGLVLLTVLVDQKDKT 57 (229)
T ss_dssp EEEECSEEEEETTCCEEEEEEECCSC--------------------------CSCEEEEEECTTCCEEEEEEECSSEEEE
T ss_pred eEECCCEEEEecCCCEEEEEEECCCC--------------------------CcEEEEEEECCCCCcEEEEEEcCCCCcc
Confidence 45667889999999999999986432 235999996421 111111 11112
Q ss_pred cCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEcCCc---ccccccCCceeecCCCcEEEE
Q psy7941 86 NNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIPPD---ISSEETSGDMMVPEGGSAKLV 159 (238)
Q Consensus 86 ~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~~---~~~~~~~~~~~~~~g~~~~l~ 159 (238)
..+||.+.. .....++|+|.+++.+|+|.|+|.+.+... ....+.|.|..... +.+.. . ......+.|.
T Consensus 58 ~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~g~gt~L~V~~~~~~~~P~V~~----~-~~~~~~~tL~ 132 (229)
T 2q86_A 58 SNGRYSATLDKDAKHSTLHITATLLDDTATYFCVVGDRGSALFGSGTQLIVIPYIQNPEPAVYQ----L-KDPRSQDSTL 132 (229)
T ss_dssp EETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEESCGGGCEECCCEEEEEECCCSSCCCEEEE----E-ECTTSTTCEE
T ss_pred cCCCEEEEEcCCCCEEEEEEcccCcccCccEEEEEEecCcccccCCEEEEEECcCCCCCCEEEE----c-cCCCCCeEEE
Confidence 356888764 345678999999999999999999864321 12234677764211 11100 0 1122378999
Q ss_pred EEEcc-ccCCeEEEEe
Q psy7941 160 CKAKG-YPTPKITWRR 174 (238)
Q Consensus 160 C~~~~-~p~~~~~W~~ 174 (238)
|.+.| +|.|.+.|..
T Consensus 133 Cl~~gf~P~p~V~~~~ 148 (229)
T 2q86_A 133 CLFTDFDSQINVPKTM 148 (229)
T ss_dssp EEEEEECTTCCCCCCC
T ss_pred EEECCcCcCCcccccC
Confidence 99988 7888775543
No 377
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Probab=99.32 E-value=5.5e-12 Score=80.93 Aligned_cols=89 Identities=17% Similarity=0.292 Sum_probs=61.0
Q ss_pred CCceeecCCCcEEEEEEEccc--cCCeEEEEeCCCeeeEeec-----CCCCCcceEEEeeceEEEEEeecCCCeEEEEEe
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGY--PTPKITWRREDNKEIIVRS-----NPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIA 217 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~--p~~~~~W~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 217 (238)
+....+.+|+.+.|.|.+.+. |.+.+.|+++ +..+.... ...............|.|.++..+|+|.|+|.|
T Consensus 17 p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 95 (112)
T 3so5_A 17 PETQSAIXGSDVSFTCSAASSSDSPMTFAWXXD-NEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVI 95 (112)
T ss_dssp CCCEEECTTCCEEEEEEEEESCCCCCEEEEEET-TEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGCEEEEEEE
T ss_pred CCCcEEECCCCEEEEEEEecCCCCCEEEEEccC-CcccccccccceeeeeccCCCccccceEEEEeccccccCCeEEEEE
Confidence 444678899999999999864 4679999994 43332110 000000001122357999999999999999999
Q ss_pred eeCCCCCccceEEEEEE
Q psy7941 218 ANGVPPTVSKRLMLHVH 234 (238)
Q Consensus 218 ~n~~g~~~~~~~~l~V~ 234 (238)
.|..|...+..+.|.|+
T Consensus 96 ~n~~g~~~s~~~~l~V~ 112 (112)
T 3so5_A 96 SNHFGSSYSVXAXLTIN 112 (112)
T ss_dssp EETTEEEECCCEEEEEC
T ss_pred EeCCCcEEEeEEEEEeC
Confidence 99999655778888773
No 378
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A
Probab=99.31 E-value=1.5e-11 Score=76.30 Aligned_cols=79 Identities=16% Similarity=0.150 Sum_probs=56.6
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
.....+.+|+.+.|.|.+.+ |.+.+.|++ ++..+.... ....... ...|.|.++..+|+|.|+|.|.|.
T Consensus 12 ~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k-~g~~i~~~~-----~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~-- 82 (93)
T 1waa_A 12 LYGVEVFVGETAHFEIELSE-PDVHGQWKL-KGQPLAASP-----DCEIIEDGKKHILILHNCQLGMTGEVSFQAANT-- 82 (93)
T ss_dssp CCCEEEETTSCEEEEEEESS-SSCCCEEEE-TTEECCCBT-----TEEEEEETTEEEEEECSCCGGGCEEEEEEETTE--
T ss_pred CcceEEeCCCCEEEEEEECC-CCCeEEEEE-CCEECcCCC-----CEEEEEECCEEEEEECCCChhhCEEEEEEECCC--
Confidence 45578899999999999976 457899999 555543221 1111222 237999999999999999999874
Q ss_pred CCccceEEEEEEe
Q psy7941 223 PTVSKRLMLHVHC 235 (238)
Q Consensus 223 ~~~~~~~~l~V~~ 235 (238)
..+..|.|..
T Consensus 83 ---~~sa~L~V~~ 92 (93)
T 1waa_A 83 ---KSAANLKVKE 92 (93)
T ss_dssp ---EEEEEEEEEC
T ss_pred ---cEEEEEEEEc
Confidence 3455677754
No 379
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=5.8e-12 Score=79.93 Aligned_cols=78 Identities=15% Similarity=0.279 Sum_probs=58.3
Q ss_pred eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEE--eeceEEEEEeecCCCeEEEEEeeeCCCCCc
Q psy7941 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV--ESEVLSLTKVTRSEMGAYQCIAANGVPPTV 225 (238)
Q Consensus 148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~ 225 (238)
+.+.+|+.+.|.|.+.+.|.+ +.|++ ++..+.... ...... ....|.|.++..+|+|.|+|.+.|..+
T Consensus 20 ~~v~~G~~v~l~C~~~~~p~~-v~W~k-~g~~~~~~~-----~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~--- 89 (104)
T 2e6p_A 20 LTFTTSERVVLTCELSRVDFP-ATWYK-DGQKVEESE-----LLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVSA--- 89 (104)
T ss_dssp EEEESSSCEECCEECSSTTCC-CEEEE-TTEECCCBT-----TBEEEEETTEEEEEESSCCTTTCEEEEEECSSCCC---
T ss_pred EEEeCCCcEEEEEEecCCCCc-cEEee-CCEECCCCC-----CEEEEeCCCEEEEEECCCChhhCEEEEEEECCceE---
Confidence 678899999999999999888 99999 555443211 111111 223699999999999999999998643
Q ss_pred cceEEEEEEeec
Q psy7941 226 SKRLMLHVHCTY 237 (238)
Q Consensus 226 ~~~~~l~V~~~p 237 (238)
.+.|.|..+|
T Consensus 90 --~~~l~V~~~P 99 (104)
T 2e6p_A 90 --FFGVTVQDPS 99 (104)
T ss_dssp --CEEEEEECCC
T ss_pred --EEEEEEcCCC
Confidence 5677888776
No 380
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A
Probab=99.30 E-value=7.1e-12 Score=81.31 Aligned_cols=101 Identities=20% Similarity=0.328 Sum_probs=64.4
Q ss_pred eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee--eeEe--ecC
Q psy7941 12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH--EHVI--TNN 87 (238)
Q Consensus 12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~--~~~~--~~~ 87 (238)
+..+..+.+..|++++|.|.+... ... ...+.|++++..+..... ...+ ...
T Consensus 7 v~~~~~v~~~~G~~v~L~C~~~~~-~~~-----------------------~~~v~W~k~~~~i~~~~~~~~~~~~~~~~ 62 (117)
T 3q0h_A 7 IETTGNISAEKGGSIILQCHLSST-TAQ-----------------------VTQVNWEQQDQLLAICNADLGWHISPSFK 62 (117)
T ss_dssp EEESCCEEEETTCCEEECEEEESC-CCE-----------------------EEEEEEEETTEEEEEEETTTEEECCGGGT
T ss_pred EEccCCEEEecCCCEEEEEEecCC-CCC-----------------------EEEEEEEeCCEEEEEEECCCCceeCcccc
Confidence 345667889999999999999752 111 235999997643322111 0001 113
Q ss_pred ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec--CCCcceeeEEEEEcCCccc
Q psy7941 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT--NPMTKQMAFLEVVIPPDIS 140 (238)
Q Consensus 88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~--~~~~~~~~~l~v~~~~~~~ 140 (238)
+|+.+. .+++|.|.+++.+|+|.|+|.+.+ .+.....+.|.|..+|.+.
T Consensus 63 ~R~~~~----~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~L~V~~pp~~~ 113 (117)
T 3q0h_A 63 DRVAPG----PGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAE 113 (117)
T ss_dssp TTEEEC----STTCEEECSCCGGGCEEEEEEEEEETTCCEEEEEEEEEECC----
T ss_pred CcEEeC----CceEEEEeeCChhhCEEEEEEEEECCCCCeEEEEEEEEEccCccc
Confidence 566542 134899999999999999999854 2444556789998887653
No 381
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.4e-12 Score=84.42 Aligned_cols=100 Identities=18% Similarity=0.093 Sum_probs=66.8
Q ss_pred eEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecC
Q psy7941 129 AFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS 208 (238)
Q Consensus 129 ~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 208 (238)
+.|.|..++. .+...+....+.+|+.+.|.|.+.+.|.|.+.|++ ++..+........ .........|.|.++..+
T Consensus 5 a~l~V~~~p~-~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k-~g~~l~~~~~~~~--~~~~~~~~~L~I~~v~~~ 80 (115)
T 2cr6_A 5 SSGLVQGRRV-HIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFL-DKTPLHANELNEI--DAQPGGYHVLTLRQLALK 80 (115)
T ss_dssp CCCCCCSSCC-EEEECCCEEEEETTSCEECCCEEESTTCCSCEEEE-SSCEECCSSSCCB--CCBTTTBCCBEECSCCTT
T ss_pred EEEEEcCCCC-eEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEE-CCEECCCCCcEEE--EEcCCCEEEEEEcCCChh
Confidence 3455554442 12223456788999999999999999999999999 4544432211000 000012347999999999
Q ss_pred CCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 209 EMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 209 d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
|+|.|+|.+ | ....++.|.|..+|
T Consensus 81 D~G~Y~C~~----g-~~~~~~~L~V~~~p 104 (115)
T 2cr6_A 81 DSGTIYFEA----G-DQRASAALRVTEKP 104 (115)
T ss_dssp TCEEEEEEE----T-TEECCEEEEEECCS
T ss_pred hCEEEEEEE----C-CeeEEEEEEEECCC
Confidence 999999994 4 33667788888776
No 382
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=6.1e-12 Score=79.69 Aligned_cols=81 Identities=21% Similarity=0.335 Sum_probs=59.7
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
+....+.+|+.+.|.|.+.+ |.+.+.|++ ++..+.... ....... ...|.|.++..+|+|.|+|.|.|
T Consensus 15 ~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k-~g~~~~~~~-----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n--- 84 (103)
T 2edf_A 15 LEDQWVAPGEDVELRCELSR-AGTPVHWLK-DRKAIRKSQ-----KYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA--- 84 (103)
T ss_dssp CCCEEECTTSCEEECCEESS-SSCCCCEEE-SSCBCCCSS-----SEEEEEETTEEEEEESSCCTTTCSEEEEECSS---
T ss_pred CCccEEcCCCCEEEEEEEeC-CCCcEEEEE-CCEEccCCC-----CEEEEECCCEEEEEECCCCcccCEEEEEEEcc---
Confidence 34577889999999999987 788999999 444332211 1111111 22699999999999999999998
Q ss_pred CCccceEEEEEEeec
Q psy7941 223 PTVSKRLMLHVHCTY 237 (238)
Q Consensus 223 ~~~~~~~~l~V~~~p 237 (238)
.+.++.|.|..+|
T Consensus 85 --~~~~~~l~V~~~p 97 (103)
T 2edf_A 85 --SKSTASLHVEEKA 97 (103)
T ss_dssp --CEEEEEEEECCCS
T ss_pred --CCcEEEEEEeCCC
Confidence 2677788888766
No 383
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A
Probab=99.29 E-value=1.1e-10 Score=78.16 Aligned_cols=103 Identities=19% Similarity=0.304 Sum_probs=65.5
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeee--eeeeeE-----
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVL--AIHEHV----- 83 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~--~~~~~~----- 83 (238)
+..++..+.+..|+++.|.|.+..... ...+.+.|++++..... ......
T Consensus 9 V~~~~~~v~~~~G~~v~L~C~~~~~~~-----------------------~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~ 65 (139)
T 1pko_A 9 VIGPGHPIRALVGDEAELPCRISPGKN-----------------------ATGMEVGWYRSPFSRVVHLYRNGKDQDAEQ 65 (139)
T ss_dssp EECCSSCEEEETTSCEEEEEEEESCCC-----------------------CTTSEEEEEEC--CCEEEEEETTEECGGGS
T ss_pred EECCCCCEEEEeCCCEEEeeEccCCCC-----------------------CCceEEEEEECCCCceEEEEeCCccccccc
Confidence 345666889999999999999964221 11356999997642111 111100
Q ss_pred -eecCccEEEEEc--CCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcC
Q psy7941 84 -ITNNARLSVTHN--DANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIP 136 (238)
Q Consensus 84 -~~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~ 136 (238)
....+|+.+... ..+.++|.|.+++.+|+|.|+|.+.+... ....+.|.|..|
T Consensus 66 ~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~~P 122 (139)
T 1pko_A 66 APEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDP 122 (139)
T ss_dssp CSTTTTSEEEECTTGGGTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECT
T ss_pred CcccCCceEEccccccCCeEEEEEccCCHHHCEEEEEEEEcCCCceEEEEEEEEecC
Confidence 011356666543 23567999999999999999999977533 344556777743
No 384
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}
Probab=99.29 E-value=2.4e-11 Score=81.99 Aligned_cols=92 Identities=17% Similarity=0.334 Sum_probs=66.0
Q ss_pred cCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecC-CCCCcceEEE----eeceEEEEEeecCCCeEEEEEee
Q psy7941 144 TSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN-PPSSQKVFSV----ESEVLSLTKVTRSEMGAYQCIAA 218 (238)
Q Consensus 144 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~~~ 218 (238)
.+..+.+..|+++.|.|.+.+.|.+.+.|++.+...+..... .......... ....|.|.++..+|+|.|+|.+.
T Consensus 44 ~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~ 123 (145)
T 1z9m_A 44 WTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIF 123 (145)
T ss_dssp BCCCEEEETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECSCCTTEEEEEECSSEEEEEECSCCGGGCEEEEEEEC
T ss_pred CCceEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceecccCCEEEecCCCCeEEEEECCCChhhCEEEEEEEE
Confidence 345678899999999999999888899999644332221110 0011112111 14579999999999999999999
Q ss_pred eCCCCCccceEEEEEEeec
Q psy7941 219 NGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 219 n~~g~~~~~~~~l~V~~~p 237 (238)
|. | ..+..+.|.|..+|
T Consensus 124 n~-~-~~~~~~~L~V~~~P 140 (145)
T 1z9m_A 124 TM-P-VRTAKSLVTVLGIP 140 (145)
T ss_dssp SS-S-CEEEEEEEEEECCC
T ss_pred cC-C-CceEEEEEEEEeCC
Confidence 99 7 55888899998876
No 385
>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=3.7e-12 Score=79.61 Aligned_cols=72 Identities=21% Similarity=0.354 Sum_probs=56.7
Q ss_pred ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 85 (238)
..+|.|...+....+.+|+++.|.|.+. +.|.+.+.|+|++..+...
T Consensus 8 ~~~~~i~~~p~~~~v~~G~~v~l~C~~~--------------------------g~p~~~v~W~k~~~~~~~~------- 54 (96)
T 2ens_A 8 LEEVQLVVEPEGGAVAPGGTVTLTCEVP--------------------------AQPSPQIHWMKDGVPLPLP------- 54 (96)
T ss_dssp CCSCCCEEESTTSEECTTCEEEEECCCS--------------------------SCSSCCCCCEESSSBCSSC-------
T ss_pred CCCCEEEECCCCCEEcCCCeEEEEEEEc--------------------------cCCCCEEEEEECCEECcCC-------
Confidence 3467888888888899999999999984 3446679999976653211
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
...+|.|.+++.+|+|.|+|.+.+.
T Consensus 55 ------------~~~~L~i~~v~~~d~G~Y~C~a~n~ 79 (96)
T 2ens_A 55 ------------PSPVLILPEIGPQDQGTYSCVATHS 79 (96)
T ss_dssp ------------CCSEEEEESCCTTTCEEEECEECCS
T ss_pred ------------CCCEEEECCCCcccCEEEEEEEEeC
Confidence 1128999999999999999999874
No 386
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X
Probab=99.29 E-value=2.2e-11 Score=77.07 Aligned_cols=82 Identities=7% Similarity=0.064 Sum_probs=54.2
Q ss_pred EecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccE--EEE--EcC
Q psy7941 21 AQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARL--SVT--HND 96 (238)
Q Consensus 21 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~ 96 (238)
..|+.+.|.|.+. +.|.|.++|++++..+... .+. ... ...
T Consensus 14 ~~~~~~~~~c~v~--------------------------G~P~P~i~W~k~g~~l~~~---------~~~~~~~~~~~~~ 58 (103)
T 1wwb_X 14 TSDHHWCIPFTVK--------------------------GNPKPALQWFYNGAILNES---------KYICTKIHVTNHT 58 (103)
T ss_dssp CCCCEEEEEEEEE--------------------------CSSCCEEEEEETTEEECCC---------SSEEEEEEEECSS
T ss_pred eECcEEEEEEEEE--------------------------EeCCCEEEEEECCEECCCC---------CcEeEEEEecCCc
Confidence 4577889999985 4668889999987654321 111 111 111
Q ss_pred CCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCC
Q psy7941 97 ANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPP 137 (238)
Q Consensus 97 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~ 137 (238)
....+|.|.+++.+|+|.|+|.+.|..+ ....+.|.|..+|
T Consensus 59 ~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~~~P 100 (103)
T 1wwb_X 59 EYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWP 100 (103)
T ss_dssp EEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECCSCCC
T ss_pred EEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEEEECCCC
Confidence 1223699999999999999999988643 3445556555444
No 387
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4
Probab=99.28 E-value=1.8e-11 Score=75.45 Aligned_cols=91 Identities=19% Similarity=0.268 Sum_probs=62.6
Q ss_pred CCceeecCCCcEEEEEEEcc-ccCCeEEEEeCCCeeeEeecCCCCCcceEEE----eeceEEEEEeecCCCeEEEEEeee
Q psy7941 145 SGDMMVPEGGSAKLVCKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFSV----ESEVLSLTKVTRSEMGAYQCIAAN 219 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~~~n 219 (238)
.+...+..|+.+.|.|.+.+ .|.|.++|.+.++.................. ....|.+.++...|+|.|+|.|.+
T Consensus 21 ~S~~tv~~G~~~~LeCpv~yc~~rPnVtWcK~~~~~c~~L~~~~q~~~~w~e~~n~s~fiL~f~~V~~sDsG~YrCsAn~ 100 (122)
T 1xau_A 21 NSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNF 100 (122)
T ss_dssp TEEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEE
T ss_pred eccEEEecCCeEEEEeEecCCCCCCcEEEEecCCeeccccccceeeecceeccCCceeEEEEEeeEEEcCCccEEEEeeC
Confidence 34456888999999999966 7899999999665433221100000000111 122788999999999999999999
Q ss_pred CCCCCccceEEEEEEe
Q psy7941 220 GVPPTVSKRLMLHVHC 235 (238)
Q Consensus 220 ~~g~~~~~~~~l~V~~ 235 (238)
..|...++++++.|..
T Consensus 101 ~~g~ieSHs~ti~V~~ 116 (122)
T 1xau_A 101 NSQVINSHSVTIHVRE 116 (122)
T ss_dssp TTEEEECCCEEEEEC-
T ss_pred CCCceeeeEEEEEEEe
Confidence 9987767788777753
No 388
>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}
Probab=99.28 E-value=3.2e-12 Score=82.94 Aligned_cols=103 Identities=16% Similarity=0.291 Sum_probs=63.8
Q ss_pred cCCCccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee
Q psy7941 2 VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE 81 (238)
Q Consensus 2 ~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~ 81 (238)
|.+...+|.|...+..+.+.+|+++.|.|.+.+ .|.|.+.|++++..+......
T Consensus 3 l~~~~~pP~i~~~p~~~~v~~G~~v~L~C~~~g--------------------------~P~p~v~W~k~~~~~~~~~~~ 56 (117)
T 2v9t_A 3 LRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEG--------------------------RPTPTIEWYKGGERVETDKDD 56 (117)
T ss_dssp CCCCCEEEEEEECCCCEEECTTCCEEECCEEEE--------------------------ESCCEEEEEETTEECCCTTTC
T ss_pred cccccCCCeeEcCCCCEEEcCCCcEEEEEECCc--------------------------cCCCeEEEEECCEeccccCCC
Confidence 344567899999999999999999999999853 456779999987654321100
Q ss_pred eEeecCccEEEEEcCCCeE--EEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEc
Q psy7941 82 HVITNNARLSVTHNDANTW--TLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVI 135 (238)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~ 135 (238)
...+.. ...+.... .+.+.+++.+|+|.|+|.+.|..+. ...+.+.+..
T Consensus 57 ----~~~~~~-~~~~~~~~~~~i~~~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~~~ 109 (117)
T 2v9t_A 57 ----PRSHRM-LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA 109 (117)
T ss_dssp ----SSCSEE-ECTTSCEEESSCCCBTTBCSSCEEEEEEEEETTEEEECCCEEEEEC-
T ss_pred ----CcceeE-EecCCcEEEEEEEeCCCCcCcCEEEEEEEEeCccceEeeeEEEEhhh
Confidence 000111 11111111 2223366899999999999886443 2334455543
No 389
>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}
Probab=99.28 E-value=2.1e-11 Score=79.97 Aligned_cols=91 Identities=18% Similarity=0.266 Sum_probs=58.4
Q ss_pred cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee--eeeE---
Q psy7941 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI--HEHV--- 83 (238)
Q Consensus 9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~--~~~~--- 83 (238)
..+..++..+.+..|++++|+|.+...... ....+.|+|.+....... ....
T Consensus 6 ~sVt~~~~~v~g~vG~~v~L~C~~~~~~~~-----------------------~~~~V~W~k~~~~~~v~~~~~g~~~~~ 62 (125)
T 4gos_A 6 HSITVTTVASAGNIGEDGILSCTFEPDIKL-----------------------SDIVIQWLKEGVLGLVHEFKEGKDELS 62 (125)
T ss_dssp CCSCEEEECEEEETTSCEEEEEEECCCSCG-----------------------GGCEEEEEETTCSSBSEEEETTEECCT
T ss_pred eEEEccCceEEEeCCCCEEEEEEEcCCccc-----------------------CcEEEEEEEeccCceEEEEEeeccccc
Confidence 345566777889999999999998532111 134589999754322111 1000
Q ss_pred ---eecCccEEEEEcC--CCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 84 ---ITNNARLSVTHND--ANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 84 ---~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
.....|+.+.... .++++|.|.+++.+|+|.|+|.+.+.
T Consensus 63 ~~~~~~~~R~~~~~~~~~~g~~sL~I~~v~~~D~G~Y~C~v~~~ 106 (125)
T 4gos_A 63 EQDEMFRGRTAVFADQVIVGNASLRLKNVQLTDAGTYKCYIITS 106 (125)
T ss_dssp TBCGGGTTCEEECTTTGGGTBCCEEESSCCGGGCEEEEEEEEET
T ss_pred ccCccccceEEEecCCccCCeEEEEECCCChHHCEEEEEEEEeC
Confidence 1113455554322 24679999999999999999999765
No 390
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}
Probab=99.28 E-value=8.9e-11 Score=75.59 Aligned_cols=98 Identities=14% Similarity=0.239 Sum_probs=63.6
Q ss_pred ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eeeee-eeEeecC
Q psy7941 13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLAIH-EHVITNN 87 (238)
Q Consensus 13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~~-~~~~~~~ 87 (238)
..+..+.+.+|++++|.|.+..... ...+.|+++.... +.... .......
T Consensus 6 ~~p~~v~~~~G~~v~L~C~~~~~~~-------------------------~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~ 60 (113)
T 1zox_A 6 TGPEEVSGQEQGSLTVQCRYTSGWK-------------------------DYKKYWCQGVPQRSCKTLVETDASEQLVKK 60 (113)
T ss_dssp ECCSEEEEETTSCEEEEEEECGGGT-------------------------TSCEEEEESSSGGGCEEEEECCSSSCCEEE
T ss_pred CCCCEEEEeCCCcEEEEeECCCCcc-------------------------cceEEEEeCCCCCCCeEEEEecCccccccC
Confidence 3466789999999999999964211 2249999975321 11111 0001224
Q ss_pred ccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEc
Q psy7941 88 ARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVI 135 (238)
Q Consensus 88 ~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~ 135 (238)
+|+.+... ..+.++|.|.+++.+|+|.|.|.+.+.+. ....+.|.|..
T Consensus 61 ~R~~~~~~~~~~~~sL~I~~~~~~DsG~Y~C~v~~~~~~~~~~v~L~V~~ 110 (113)
T 1zox_A 61 NRVSIRDNQRDFIFTVTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNIGP 110 (113)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCSSSCCEEEEEEEEEC
T ss_pred CCEEEEECCcCCEEEEEEccCCHHHCEEEEEeeEcCCCCccEEEEEEEEc
Confidence 67777643 44678999999999999999999976542 23344555543
No 391
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2.1e-12 Score=81.56 Aligned_cols=85 Identities=18% Similarity=0.283 Sum_probs=58.6
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
+....+.+|+.+.|.|.+.+.| +.+.|++ ++..+........ ....... ...|.|.++..+|+|.|+|.|.|.
T Consensus 15 ~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k-~g~~i~~~~~~~~-~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~-- 89 (101)
T 2edk_A 15 LEDQQVFVGDRVEMAVEVSEEG-AQVMWMK-NGVELTREDSFKA-RYRFKKDGKRHILIFSDVVQEDRGRYQVITNGG-- 89 (101)
T ss_dssp CCCEEEESSCCCBCCEEESCSS-CCCEEEE-SSCBCCCSCCSSC-CCEEEECSSEEEEECSSCCGGGCSBEEEECSSC--
T ss_pred CCceEEcCCCCEEEEEEEeCCC-CEEEEEE-CCEECCCCCCcce-eEEEEECCCEEEEEECCCChhhCEEEEEEEcCC--
Confidence 4457789999999999999988 9999999 4444322110000 1111112 236999999999999999999872
Q ss_pred CCccceEEEEEEeec
Q psy7941 223 PTVSKRLMLHVHCTY 237 (238)
Q Consensus 223 ~~~~~~~~l~V~~~p 237 (238)
+.+..|.|..+|
T Consensus 90 ---~~~~~l~V~~~P 101 (101)
T 2edk_A 90 ---QCEAELIVEEKQ 101 (101)
T ss_dssp ---EECCBEEEECCC
T ss_pred ---cEEEEEEEeCCC
Confidence 344567787766
No 392
>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Probab=99.27 E-value=5.1e-11 Score=77.52 Aligned_cols=83 Identities=8% Similarity=0.038 Sum_probs=56.1
Q ss_pred EecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEc-----
Q psy7941 21 AQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHN----- 95 (238)
Q Consensus 21 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 95 (238)
..+..+.|.|.+. +.|.|.++|+|++..+.. +.++.....
T Consensus 13 ~~~~~~~l~c~v~--------------------------G~P~P~I~W~knG~~l~~---------~~~~~~~~~~~~~~ 57 (126)
T 1he7_A 13 VEMHHWCIPFSVD--------------------------GQPAPSLRWLFNGSVLNE---------TSFIFTEFLEPAAN 57 (126)
T ss_dssp CCCCEEEEEEEEC--------------------------CSSCCEEEEEETTEECCC---------CSSEEEEEECCCSS
T ss_pred ccCccEEEEEEEe--------------------------eeCCCeEEEEECCEECCC---------CCceeEEEeecccc
Confidence 3677889999984 567899999998766432 222211110
Q ss_pred -CCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCc
Q psy7941 96 -DANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPD 138 (238)
Q Consensus 96 -~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~ 138 (238)
.....+|.|.+++..|+|.|+|.|.|.. .....+.+.|...|.
T Consensus 58 ~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~~l~v~~~P~ 102 (126)
T 1he7_A 58 ETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPF 102 (126)
T ss_dssp CCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCCSCTT
T ss_pred ccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEEEEEEEcCCC
Confidence 0123589999999999999999998864 344455566655553
No 393
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Probab=99.27 E-value=4.1e-11 Score=75.39 Aligned_cols=79 Identities=18% Similarity=0.300 Sum_probs=58.5
Q ss_pred eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCCCCCc
Q psy7941 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGVPPTV 225 (238)
Q Consensus 148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~g~~~ 225 (238)
..+.+|+.+.|.|.+. .|.+.+.|+++ +..+.... ....... ...|.|.++..+|+|.|+|.| | ..
T Consensus 18 ~~v~~G~~v~l~C~~~-~p~~~v~W~k~-g~~i~~~~-----~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a----g-~~ 85 (100)
T 2yuv_A 18 YQVDKGGRVRFVVELA-DPKLEVKWYKN-GQEIRPST-----KYIFEHKGCQRILFINNCQMTDDSEYYVTA----G-DE 85 (100)
T ss_dssp EEECTTEEEEEEEEES-CTTSCEEEEES-SCBCCCBT-----TEEEEEETTEEEEEEEEECTTTCCEEEEEE----T-TE
T ss_pred cEEcCCCcEEEEEEec-CCCceEEEEEC-CEECCCCC-----CEEEEecCCEEEEEEcCCCcCcCEEEEEEE----C-Cc
Confidence 5678999999999998 68899999994 44332211 1111111 236999999999999999999 5 34
Q ss_pred cceEEEEEEeecC
Q psy7941 226 SKRLMLHVHCTYL 238 (238)
Q Consensus 226 ~~~~~l~V~~~p~ 238 (238)
+.++.|.|..+|.
T Consensus 86 ~~~~~l~V~~~P~ 98 (100)
T 2yuv_A 86 KCSTELFVRSGPS 98 (100)
T ss_dssp EEEEEEEECCSCC
T ss_pred eEEEEEEEecCCC
Confidence 7788899998874
No 394
>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...
Probab=99.27 E-value=3.3e-11 Score=77.11 Aligned_cols=88 Identities=18% Similarity=0.311 Sum_probs=61.1
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e-e--eeeeeeeE
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K-A--VLAIHEHV 83 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~-~--~~~~~~~~ 83 (238)
.+.+...|..+.+.+|++++|.|.+... +.+.+.|+++.. . . +.......
T Consensus 3 ~~~v~q~p~~~~v~~G~~v~L~C~~~~~--------------------------~~~~v~W~r~~~~~~~~~l~~~~~~~ 56 (109)
T 2q20_A 3 DIQMTQSPSSLSASVGDRVTITCQASQD--------------------------ISNYLNWYQQKPGKAPKLLIYDASNL 56 (109)
T ss_dssp CCCEEEECSEEEECTTCCEEEEEEESSC--------------------------CTTCEEEEEECTTSCEEEEEETTTEE
T ss_pred CccEEeeCCEEEecCCCcEEEEEeeccC--------------------------CCCcEEEEEECCCCCCEEEEEEcCcc
Confidence 3566777888999999999999999632 245699999642 1 1 11110000
Q ss_pred -eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 84 -ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 84 -~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
....+|+.+.. ....++|.|.+++.+|+|.|.|.+.+.
T Consensus 57 ~~~~~~R~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 95 (109)
T 2q20_A 57 ETGVPSRFSGSG-SGTDFTFTISSLQPEDIATYYCQQYDN 95 (109)
T ss_dssp CTTCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred CCCCCCcEEEec-cCCEEEEEECCCChhhCEEEEEEEeeC
Confidence 01246777754 346679999999999999999999653
No 395
>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...
Probab=99.27 E-value=6.1e-11 Score=77.20 Aligned_cols=87 Identities=18% Similarity=0.274 Sum_probs=59.9
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eeeeee-eEe
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLAIHE-HVI 84 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~~~~-~~~ 84 (238)
.+...|..+.+.+|++++|.|.+... +.+.+.||++.. .. +..... ...
T Consensus 3 ~v~q~p~~~~v~~G~~v~L~C~~~~~--------------------------~~~~v~W~r~~~g~~~~~li~~~~~~~~ 56 (120)
T 1mqk_L 3 ELTQTPVSLSASVGETVTITCRASEN--------------------------IYSYLAWYQQKQGKSPQFLVYNAKTLGE 56 (120)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSC--------------------------CTTCEEEEEECTTSCCEEEEETTTEECT
T ss_pred ceEecCCeEEEcCCCcEEEEEEeCCC--------------------------CCceEEEEEECCCCCCEEEEEeCCcCCC
Confidence 35567888999999999999999632 235699999642 11 111100 001
Q ss_pred ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941 85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
...+|+.+.. ....++|.|.+++.+|+|.|+|.+.+..
T Consensus 57 ~~~~R~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 94 (120)
T 1mqk_L 57 GVPSRFSGSG-SGTQFSLKINSLLPEDFGSYYCQHHYGT 94 (120)
T ss_dssp TCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred CCCceEEEec-cCCEEEEEECCCCHHHCEEEEEEEEeCC
Confidence 1246787754 3456799999999999999999997643
No 396
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=1.2e-11 Score=77.69 Aligned_cols=72 Identities=14% Similarity=0.322 Sum_probs=53.5
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccE
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARL 90 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 90 (238)
...++..+.+.+|+++.|.|.+.. .| +.+.|+|++..+.. ..++
T Consensus 6 ~~~~p~~~~v~~G~~v~L~C~~~g--------------------------~p-p~i~W~k~g~~~~~---------~~~~ 49 (99)
T 2cr3_A 6 SGVEVESFLVHPGDLLQLRCRLRD--------------------------DV-QSINWLRDGVQLAE---------SNRT 49 (99)
T ss_dssp CSCCEEECCBCTTSCEEEECCCCS--------------------------SC-CEEEEEESSSBCCC---------CSSE
T ss_pred CCCCCcCeEEeCCCcEEEEEEecC--------------------------CC-CeEEEEECCEECCC---------CCcE
Confidence 345577788999999999999853 22 47999998755321 2234
Q ss_pred EEEEcCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941 91 SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 91 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
.+.. .+|.|.+++.+|+|.|+|.+.|..
T Consensus 50 ~~~~-----~~L~i~~v~~~D~G~Y~C~a~n~~ 77 (99)
T 2cr3_A 50 RITG-----EEVEVQDSVPADSGLYACVTSSPS 77 (99)
T ss_dssp EECS-----SEEEETTCCTTTCEEEEEEEEETT
T ss_pred EEEC-----CEEEEccCCHHHCEEEEEEEEeCC
Confidence 3331 289999999999999999998753
No 397
>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell repertoire, auto-immunity, I system; HET: NAG; 3.50A {Homo sapiens} SCOP: b.1.1.1
Probab=99.26 E-value=2.3e-13 Score=97.41 Aligned_cols=174 Identities=17% Similarity=0.227 Sum_probs=55.3
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeee-eeeEee
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAI-HEHVIT 85 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~-~~~~~~ 85 (238)
+...+..+.+.+|+++.|.|.+.... ..+.||++... .+... ......
T Consensus 4 v~Q~p~~v~v~~G~~v~L~C~~s~~~---------------------------~~v~W~rq~~g~~~~~l~~~~~~~~~~ 56 (207)
T 1ymm_D 4 GEEDPQALSIQEGENATMNCSYKTSI---------------------------NNLQWYRQNSGRGLVHLILIRSNEREK 56 (207)
T ss_dssp -----CCCCCSSCCCCCBCCBCSSCE---------------------------EEEEEECCCSSCCCCCCCEEESSSCCC
T ss_pred eEECCCEEEEeCCCCEEEEEEecCCC---------------------------ceEEEEEECCCCCcEEEEEEcCCCccc
Confidence 34557778899999999999985422 34999996521 11111 111112
Q ss_pred cCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCC---C--cceeeEEEEEcCCc---ccccccCCceeecCCCcE
Q psy7941 86 NNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNP---M--TKQMAFLEVVIPPD---ISSEETSGDMMVPEGGSA 156 (238)
Q Consensus 86 ~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~--~~~~~~l~v~~~~~---~~~~~~~~~~~~~~g~~~ 156 (238)
..+||.+.. .....++|.|.+++.+|+|.|+|.+.+.. . ....+.|.|..... +.+.. . . .....+
T Consensus 57 ~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~g~gt~L~V~~~~~~~~P~V~~-~---~-~~~~~v 131 (207)
T 1ymm_D 57 HSGRLRVTLDTSKKSSSLLITASRAADTASYFCATDTTSGTYKYIFGTGTRLKVLANIQNPDPAVYQ-L---R-DSKSSD 131 (207)
T ss_dssp CSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEEEEEETTSCSCEEECC--------------------------------
T ss_pred cCCCEEEEEcCCCCEEEEEECcCCcccCceEEEEEEcCCCcceeeECCCEEEEEECCCCCCCCEEEe-c---C-CCCCCe
Confidence 356776653 23356799999999999999999996531 1 11223455543211 11100 0 0 112378
Q ss_pred EEEEEEcc-ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 157 KLVCKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 157 ~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
.|.|.+.| +|.|.+.... +. ............. ...+. .+......+..+|+|.+.+..+
T Consensus 132 tL~C~~~gf~P~p~v~~~~-~~-~~~~t~~~~~~~~---~~~S~-t~~~~~w~~~~~~tC~V~~~~~ 192 (207)
T 1ymm_D 132 KSVCLFTDFDSQTNVSQSK-DS-DVYITDKTVLDMR---SMDFK-SNSAVAWSNKSDFACANAFNNS 192 (207)
T ss_dssp -------------------------------------------------------------------
T ss_pred EEEEEccccccCCcccccc-cc-ceeecCCceeccc---ccccc-ccchhhcCCCCceEEEEEeCCc
Confidence 99999988 7888763322 11 1100000000000 11223 4455566667799999987643
No 398
>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}
Probab=99.26 E-value=2.6e-11 Score=79.35 Aligned_cols=99 Identities=24% Similarity=0.367 Sum_probs=59.7
Q ss_pred ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeee---ee-e-eeE----
Q psy7941 13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVL---AI-H-EHV---- 83 (238)
Q Consensus 13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~---~~-~-~~~---- 83 (238)
..++.+.+..|++++|+|.+....+.. ...+.|+|....... .. . ...
T Consensus 5 ~~p~~vtv~~G~~v~L~C~~~~~~~~~-----------------------~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~ 61 (123)
T 4gjt_B 5 ETSDVVTVVLGQDAKLPCFYRGDSGEQ-----------------------VGQVAWARVDAGEGAQELALLHSKYGLHVS 61 (123)
T ss_dssp ECCSEEECCTTSEEEECCEECCCTTCC-----------------------EEEEEEEECCCSSCCCEEEEECSSSCCCBC
T ss_pred EcCCEEEEEcCCCEEEEEEEeCCccCc-----------------------eeEEEEEEcCCCCCcceeEEEEecCCcEeC
Confidence 456788999999999999986533221 235899986432111 00 0 000
Q ss_pred eecCccEEEEEc--CCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEE
Q psy7941 84 ITNNARLSVTHN--DANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVV 134 (238)
Q Consensus 84 ~~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~ 134 (238)
....+|+.+... ...+++|.|.+++.+|+|.|+|.+.+.... ...+.|+|.
T Consensus 62 ~~~~~R~~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~t~~~g~~~~~~~L~Vl 116 (123)
T 4gjt_B 62 PAYEGRVEQPPPPRNPLDGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVL 116 (123)
T ss_dssp GGGTTTEECCCSSCCTTBCCEEEESCCSSSCSEEEEEEEESSSCEEEEEEEEEC-
T ss_pred ccceeEEEEecCCCcCCEEEEEECCCChHHCEEEEEEEEECCCCeEEeEEEEEEE
Confidence 011345554332 235678999999999999999998654332 333445543
No 399
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=4.1e-11 Score=75.68 Aligned_cols=91 Identities=20% Similarity=0.277 Sum_probs=62.2
Q ss_pred cccceecc---CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE
Q psy7941 7 FEPDFLYP---LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV 83 (238)
Q Consensus 7 ~~p~~~~~---~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~ 83 (238)
.++.|... +..+.+.+|+++.|.|.+. .|.+.+.|+|++..+..
T Consensus 7 pp~~~~~~~~~~~~~~v~~G~~v~L~C~~~---------------------------~p~~~v~W~k~g~~~~~------ 53 (102)
T 2eo1_A 7 GKVVFAKEQPAHREVQAEAGASATLSCEVA---------------------------QAQTEVTWYKDGKKLSS------ 53 (102)
T ss_dssp CCCCSCSSCCSCEEEEEETTCCEEECCBCS---------------------------CSSSCCEEEETTEECCC------
T ss_pred CCEEecCcCCCcccEEEeCCCcEEEEEEec---------------------------CCCCceEEEECCEECCC------
Confidence 34455544 3466899999999999984 23567999998765421
Q ss_pred eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCC
Q psy7941 84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPP 137 (238)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~ 137 (238)
..++.+... ....+|.|.+++.+|+|.|+|.+.+. ...+.|.|..++
T Consensus 54 ---~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~~~---~~~~~l~V~~p~ 100 (102)
T 2eo1_A 54 ---SSKVRVEAV-GCTRRLVVQQAGQAEAGEYSCEAGGQ---QLSFRLQVAGQC 100 (102)
T ss_dssp ---CSSEEEEEE-TTEEEEEETTCCTTTCSCEEEEETTE---ECCEEEEEESCC
T ss_pred ---CCCEEEEEc-CCEEEEEECCCCcccCEEEEEEcCCC---cEEEEEEEeCCC
Confidence 234444332 23348999999999999999998432 334667777654
No 400
>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}
Probab=99.26 E-value=4.1e-11 Score=80.31 Aligned_cols=86 Identities=19% Similarity=0.356 Sum_probs=59.5
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc----eeeeeee-eeEe
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT----KAVLAIH-EHVI 84 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~----~~~~~~~-~~~~ 84 (238)
.+...+..+.+.+|++++|.|.+.... ...+.||+... ..+.... ....
T Consensus 2 ~v~Q~p~~v~v~~G~~vtL~C~~s~~~--------------------------~~~v~Wyrq~~g~~~~~li~~~~~~~~ 55 (143)
T 3u6r_L 2 ELTQSPATLSLSPGERATLSCRASQSV--------------------------NKYLAWYQQKPGQAPRLLIYDASNRAT 55 (143)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCC--------------------------TTCEEEEEECTTSCCEEEEETTTEECT
T ss_pred eEEECCCEEEEeCCCCEEEEEEECCCC--------------------------ceeeEEEEECCCCCCEEEEEeCCccCC
Confidence 356778889999999999999996432 23599999632 1111111 1111
Q ss_pred ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
....||.+.. ....++|+|.+++.+|+|.|+|.+.+.
T Consensus 56 ~~~~Rfs~~~-~~~~~sL~I~~l~~~DsG~Y~C~~~~~ 92 (143)
T 3u6r_L 56 GIPARFSGSG-SGTDFTLTISNLEPEDFAVYYCQQRSD 92 (143)
T ss_dssp TCCTTEEEEE-ETTEEEEEECSCCGGGCEEEEEEECSS
T ss_pred CccCcEeEEc-cCCEEEEEEccCcccCCEEEEEEEecC
Confidence 1256787763 446779999999999999999998654
No 401
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=3.6e-11 Score=77.40 Aligned_cols=78 Identities=19% Similarity=0.326 Sum_probs=58.6
Q ss_pred eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCCCCCc
Q psy7941 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGVPPTV 225 (238)
Q Consensus 148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~g~~~ 225 (238)
+.+..|+.+.|.|.+. .|.+.+.|++ ++..+.... ....... ...|.|.++..+|+|.|+|.+.| .
T Consensus 23 ~~~~~G~~v~L~C~~~-~p~~~v~W~k-~g~~~~~~~-----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n-----~ 90 (113)
T 2cpc_A 23 VAAVRLERVVLTCELC-RPWAEVRWTK-DGEEVVESP-----ALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD-----E 90 (113)
T ss_dssp EEEETTCCEEEEEEES-CTTCCCEEEE-TTEECCCBT-----TBEEEECSSEEEEEESSCCTTTCEEEEEESSS-----C
T ss_pred EEEEcCCeEEEEEEec-CCCCeEEEEE-CCEECccCC-----CEEEEECCCEEEEEECCCCcccCEEEEEEEec-----C
Confidence 5677899999999995 7888999999 555443211 1111212 24799999999999999999998 3
Q ss_pred cceEEEEEEeec
Q psy7941 226 SKRLMLHVHCTY 237 (238)
Q Consensus 226 ~~~~~l~V~~~p 237 (238)
+..+.|.|..+|
T Consensus 91 ~~~~~l~V~~~p 102 (113)
T 2cpc_A 91 SASFTVTVTEPP 102 (113)
T ss_dssp EEEEEEEEECCC
T ss_pred cEEEEEEEecCC
Confidence 678888898877
No 402
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=6.4e-12 Score=79.76 Aligned_cols=84 Identities=17% Similarity=0.150 Sum_probs=60.5
Q ss_pred cCCceeecCCCcEEEEEEEccccC-CeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeC
Q psy7941 144 TSGDMMVPEGGSAKLVCKAKGYPT-PKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANG 220 (238)
Q Consensus 144 ~~~~~~~~~g~~~~l~C~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~ 220 (238)
......+.+|+.+.|.|.+.+.|. +.+.|++ ++..+.... ....... ...|.|.++..+|+|.|+|.|.|
T Consensus 14 ~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k-~g~~i~~~~-----r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~- 86 (104)
T 2eny_A 14 RLKTMEVLEGESCSFECVLSHESASDPAMWTV-GGKTVGSSS-----RFQATRQGRKYILVVREAAPSDAGEVVFSVRG- 86 (104)
T ss_dssp CCCCEEEESSCCEEEEEECSSCCCSSCBCCBS-SSSBCSBCS-----SCEEEEETTEEEEEECSCCTTTCSCEEEEETT-
T ss_pred cCCCcEEcCCCcEEEEEEEcCCCCCceeEEEE-CCEECCCCC-----CEEEEEcCCEEEEEECCCCHHHCEEEEEEECC-
Confidence 345678899999999999988775 4899999 444443211 1111111 23799999999999999999854
Q ss_pred CCCCccceEEEEEEeecC
Q psy7941 221 VPPTVSKRLMLHVHCTYL 238 (238)
Q Consensus 221 ~g~~~~~~~~l~V~~~p~ 238 (238)
...+..|.|..+|.
T Consensus 87 ----~~~~a~L~V~~~p~ 100 (104)
T 2eny_A 87 ----LTSKASLIVRERSG 100 (104)
T ss_dssp ----EEEEECEEEECCCS
T ss_pred ----eeEEEEEEEeCCCc
Confidence 25677888888773
No 403
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.26 E-value=1.3e-10 Score=83.11 Aligned_cols=88 Identities=22% Similarity=0.268 Sum_probs=65.0
Q ss_pred ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEE
Q psy7941 13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSV 92 (238)
Q Consensus 13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 92 (238)
..+..+.+.+|+++.|.|.+. +.|.+.+.|++++..+. ...++.+
T Consensus 122 ~~~~~~~v~~g~~~~l~C~~~--------------------------g~p~p~v~W~~~~~~~~---------~~~~~~~ 166 (212)
T 2r15_A 122 GLPDVVTIQEGKALNLTCNVW--------------------------GDPPPEVSWLKNEKALA---------QTDHCNL 166 (212)
T ss_dssp BCCSEEEEETTCCEEEEEEEE--------------------------CSSCCEEEEEETTEEEC---------CCSSEEE
T ss_pred cCCCcEEEccCCeEEEEEEEc--------------------------CCCCceEEEEECCeECc---------cCCCEEE
Confidence 456678899999999999985 34577899999876532 2345555
Q ss_pred EEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEc
Q psy7941 93 THNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVI 135 (238)
Q Consensus 93 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~ 135 (238)
........+|.|.+++.+|+|.|+|.+.|... ....+.|.|..
T Consensus 167 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 210 (212)
T 2r15_A 167 KFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 210 (212)
T ss_dssp EEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEc
Confidence 55445556999999999999999999987643 34455566654
No 404
>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune system; NMR {Mus musculus}
Probab=99.25 E-value=2.2e-10 Score=93.88 Aligned_cols=181 Identities=13% Similarity=0.219 Sum_probs=99.2
Q ss_pred eeccCceeE-EEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee-eEeecCc
Q psy7941 11 FLYPLENVT-IAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE-HVITNNA 88 (238)
Q Consensus 11 ~~~~~~~~~-v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~ 88 (238)
|...+...- +..+++..|+|.+...... ...++|+|++++..+...... .....++
T Consensus 345 fl~~~~~~~~~~~~~~~~l~C~~~~~~p~----------------------~~~i~v~W~~~~~~~~~~~t~~~~~~~n~ 402 (551)
T 1ntl_A 345 FIFPPKPKDVLTITLTPKVTCVVVDISKD----------------------DPEVQFSWFVDDVEVHTAQTQPREEQFNS 402 (551)
T ss_pred EEcCCCcccceeeccCcceEEEEEecccC----------------------CCceEEEEEECCccccccccCCceECCCC
Confidence 333344333 6678889999998753221 012579999987654321111 1111233
Q ss_pred cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc-c--eeeEEEE--EcCCcccccccCCceeecCCCcEEEEEEEc
Q psy7941 89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT-K--QMAFLEV--VIPPDISSEETSGDMMVPEGGSAKLVCKAK 163 (238)
Q Consensus 89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~--~~~~l~v--~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~ 163 (238)
.+.+.+ .|.|......|.+.|+|++.+.... . ..+.+.+ ..+|.+...... ..+..++.+.|.|.+.
T Consensus 403 ~~~~~s------~L~i~~~~~~~~~~y~C~v~~~~~~~~~~~~~~~~~~~~~~P~V~~~~~~--~~~~~~~~~~L~C~v~ 474 (551)
T 1ntl_A 403 TFRSVS------ELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQLYTIPPP--KEQMAKDKVSLTCMIT 474 (551)
T ss_pred eEEEEE------eeEcCHHHccCCceEEEEEecCCCCCCeEEEEecCCCCCcCCceEEeCCC--hhhccCCceEEEEEEE
Confidence 444433 7888877777889999999775432 1 1222222 244544332111 2234688899999999
Q ss_pred c-ccCC-eEEEEeCCCeeeEeecCCCC--CcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 164 G-YPTP-KITWRREDNKEIIVRSNPPS--SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 164 ~-~p~~-~~~W~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
| +|.. .|+|++ ++..+........ ...-.....+.|.+..-...+.+.|+|.+.|...
T Consensus 475 gfyP~~i~v~W~k-~g~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~~~~ytC~V~h~~l 536 (551)
T 1ntl_A 475 DFFPEDITVEWQW-NGQPAENYKNTQPIMNTNGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL 536 (551)
T ss_pred EeECCCCEEEEEE-CCEEccCceeccceeCCCCCEEEEEEEEEcHHHcCCCCeEEEEEEECCC
Confidence 9 6653 899999 5544321110000 0000011122344443334457799999999764
No 405
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Probab=99.25 E-value=1.4e-11 Score=82.25 Aligned_cols=93 Identities=15% Similarity=0.219 Sum_probs=61.4
Q ss_pred CccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE-
Q psy7941 5 RGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV- 83 (238)
Q Consensus 5 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~- 83 (238)
...+|.|...+..+.+.+|+++.|.|.+. +.|.+.+.|++++...........
T Consensus 18 ~~~pP~~~~~p~~~~v~~G~~v~L~C~~~--------------------------g~P~p~i~W~k~~~~~~~~~~~~~~ 71 (137)
T 3qr2_A 18 GSHMAGFVQAPLSQQRWVGGSVELHCEAV--------------------------GSPVPEIQWWFEGQGPNDICSQLWD 71 (137)
T ss_dssp ---CCEEEECCCCEEEETTSCEEEEEEEE--------------------------CSSCCEEEEEEEESSTTCCCEECCT
T ss_pred CCCCCeEEcCCCCEEEeCCCCEEEEEEEe--------------------------eecCCeEEEEECCCCccccceeecc
Confidence 45689999999999999999999999985 345678999996553321100000
Q ss_pred eecCccEEEEE--cCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941 84 ITNNARLSVTH--NDANTWTLNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 84 ~~~~~~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
-....++.... ......+|.|.+++.+|+|.|+|.+.|..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 113 (137)
T 3qr2_A 72 GARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDP 113 (137)
T ss_dssp THHHHTEEEEEEESSSEEEEEEECSCCGGGCEEEEEEEECCT
T ss_pred cCcccceEEecccccccceEEEECCCCcccCEEEEEEEEecC
Confidence 00011222221 11234599999999999999999998753
No 406
>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A
Probab=99.25 E-value=4.6e-11 Score=77.69 Aligned_cols=87 Identities=17% Similarity=0.296 Sum_probs=60.5
Q ss_pred cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eeeee-eeE
Q psy7941 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLAIH-EHV 83 (238)
Q Consensus 9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~~~-~~~ 83 (238)
+.+...+..+.+.+|++++|.|.+... +.+.+.|+++.. .. +.... ...
T Consensus 4 ~~v~q~p~~v~v~~G~~vtL~C~~~~~--------------------------~~~~v~W~r~~~g~~~~~l~~~~~~~~ 57 (119)
T 2e27_L 4 IQMTQSPSSLSASLGGKVTITCKANQD--------------------------IKKKIAWYQHKPGKGPRLLIYYTSTLK 57 (119)
T ss_dssp CCEEEECSEEEEETTCCEEEEEEESSC--------------------------CTTCEEEEEECTTSCCEEEEETTTEEC
T ss_pred ceeEecCCeEEEeCCCCEEEEEEeCCC--------------------------CCceEEEEEECCCCCCEEEEEECCccC
Confidence 456677888999999999999998642 245699999642 11 11110 000
Q ss_pred eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
....+||.+.. ....++|.|.+++.+|+|.|+|.+.+.
T Consensus 58 ~~~~~R~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 95 (119)
T 2e27_L 58 SGISSRFSGSG-SGRDYSFSISNLEPEDAATYYCLQYDN 95 (119)
T ss_dssp TTSCTTEEEEE-ETTEEEEEECSCCGGGCEEEEEEECGG
T ss_pred CCCCCcEEEEc-cCCEEEEEECCCChHHCEEEEEEEccC
Confidence 11246787754 355779999999999999999999653
No 407
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Probab=99.25 E-value=1.3e-10 Score=75.84 Aligned_cols=90 Identities=18% Similarity=0.343 Sum_probs=60.5
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeee-eeeEe
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAI-HEHVI 84 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~-~~~~~ 84 (238)
.+...+..+.+.+|++++|.|.+..... ....+.|++.... ..... .....
T Consensus 12 ~~~~~~~~v~~~~G~svtL~C~~s~~~~------------------------~~~~v~W~rq~~~~~~~~li~~~~~~~~ 67 (122)
T 1hkf_A 12 QAQSKAQVLQSVAGQTLTVRCQYPPTGS------------------------LYEKKGWCKEASALVCIRLVTSSKPRTM 67 (122)
T ss_dssp ---CCCEEEEECTTCCEEEEEECCCCTT------------------------CCCEEEEEEEEETTEEEEEEEECSTTCC
T ss_pred hhccCCceEEEecCCCEEEEeEccCCCC------------------------cccEEEEEcCCCCCCceEEEEeCCeEeE
Confidence 4567788899999999999999864211 1235899996421 11111 11112
Q ss_pred ecCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941 85 TNNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 85 ~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
...+||.+.. .....++|+|.+++.+|+|.|.|.+....
T Consensus 68 ~~~~R~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~v~~~~ 107 (122)
T 1hkf_A 68 AWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYRPS 107 (122)
T ss_dssp BCSTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECTT
T ss_pred eecCcEEEEEcCcCCEEEEEEeCCCHHHCEEEEEEEEcCC
Confidence 2357888764 34578899999999999999999997654
No 408
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}
Probab=99.25 E-value=3.4e-11 Score=77.94 Aligned_cols=100 Identities=15% Similarity=0.302 Sum_probs=63.9
Q ss_pred ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce------eeeeee-e-eEe
Q psy7941 13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK------AVLAIH-E-HVI 84 (238)
Q Consensus 13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~------~~~~~~-~-~~~ 84 (238)
.++..+.+.+|+++.|.|.+..... ...+.|++.... ...... . ...
T Consensus 2 ~~~~~v~~~~G~~v~L~C~~~~~~~-------------------------~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~ 56 (116)
T 2or8_A 2 DSYVEVKGVVGHPVTLPCTYSTYRG-------------------------ITTTCWGRGQCPSSACQNTLIWTNGHRVTY 56 (116)
T ss_dssp CCCEEEEEETTSCEEECCBCCCTTC-------------------------CCCEEEEESCCCSSSCTTEEEEECSSSEEE
T ss_pred CCcceEEEEeCCcEEEEEEeeCCCC-------------------------CcEEEEEEECCCCCCceEEEEEeCCcccCc
Confidence 3567789999999999999863211 235999997521 111111 0 112
Q ss_pred ecCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCCCc-ceeeEEEEEcCC
Q psy7941 85 TNNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPMT-KQMAFLEVVIPP 137 (238)
Q Consensus 85 ~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l~v~~~~ 137 (238)
...+|+.+... ....++|.|.+++.+|+|.|+|.+.+.... ...+.+.|.+.|
T Consensus 57 ~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~~~l~V~p 111 (116)
T 2or8_A 57 QKSSRYNLKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKP 111 (116)
T ss_dssp ESSTTEECCSCGGGTBCCEEESSCCGGGCEEEEEEECCSSTTCCEEEEEEEEEEC
T ss_pred CCCCeEEEecCCCCCeEEEEECCCCcccCEEEEEEEEcCCcccccEEEEEEEECC
Confidence 34567765422 335678999999999999999999765432 235555655544
No 409
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Probab=99.25 E-value=4.2e-11 Score=84.76 Aligned_cols=130 Identities=13% Similarity=0.165 Sum_probs=80.4
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e-e--eeeee-eeEee
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K-A--VLAIH-EHVIT 85 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~-~--~~~~~-~~~~~ 85 (238)
+...+..+.+.+|+++.|.|.+.... ...+.||+... . + +.... .....
T Consensus 4 v~Q~p~~v~v~~G~~v~L~C~~s~~~--------------------------~~~v~Wyrq~~g~~~~~l~~~~~~~~~~ 57 (194)
T 1lp9_E 4 VTQTEGLVTLTEGLPVMLNCTYQSTY--------------------------SPFLFWYVQHLNEAPKLLLKSFTDNKRP 57 (194)
T ss_dssp EEECCSEEEEETTSCEEECEEEECSS--------------------------SCCEEEEEECTTSCCEEEEESCSSTTCC
T ss_pred cEecCCEEEEecCCCEEEEEEeCCCC--------------------------CceEEEEEeCCCCCeEEEEEEcCCCCcc
Confidence 45667889999999999999987432 23599999642 1 1 11110 01112
Q ss_pred cCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecC---CC---cceeeEEEEEcCC---cccccccCCceeecCCCc
Q psy7941 86 NNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTN---PM---TKQMAFLEVVIPP---DISSEETSGDMMVPEGGS 155 (238)
Q Consensus 86 ~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~---~~---~~~~~~l~v~~~~---~~~~~~~~~~~~~~~g~~ 155 (238)
..+||.+... ....++|.|.+++.+|+|.|+|.+.+. .. ....+.|.|...+ .+.+.. .......
T Consensus 58 ~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~P~V~~-----~~~~~~~ 132 (194)
T 1lp9_E 58 EHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALFLASSSFSKLVFGQGTSLSVVPNIQNPEPAVYQ-----LKDPRSQ 132 (194)
T ss_dssp CCSSCEECCBGGGTBCCEEESSCCGGGCEEEEEEEEECSSSSCEEEECCCEEEEEECCCSSCCCEEEE-----EECTTSS
T ss_pred cCCCeEEEecCCCCEEEEEEcccCcccCeeEEEEEecccCCcceeeeccCceEEecCcCCCCCCeeEe-----cCCCCCC
Confidence 2567776532 235679999999999999999999652 11 1123467776422 111100 0111236
Q ss_pred EEEEEEEcc-ccCCeEE
Q psy7941 156 AKLVCKAKG-YPTPKIT 171 (238)
Q Consensus 156 ~~l~C~~~~-~p~~~~~ 171 (238)
+.|.|.+.+ +|.+.+.
T Consensus 133 ~tL~Cl~~gf~P~~~V~ 149 (194)
T 1lp9_E 133 DSTLCLFTDFDSQINVP 149 (194)
T ss_dssp SCEEEEEESCCTTSCCC
T ss_pred cEEEEEeecccCCcccc
Confidence 899999988 7888773
No 410
>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}
Probab=99.24 E-value=1.3e-10 Score=76.65 Aligned_cols=102 Identities=21% Similarity=0.381 Sum_probs=66.4
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eeeeee--eEe
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLAIHE--HVI 84 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~~~~--~~~ 84 (238)
++..+..+.+.+|++++|.|.+....+ ...+.||+... .. +..... ...
T Consensus 4 ~~Q~P~~~~v~~G~~vtL~C~~s~~~~-------------------------~~~v~Wyrq~~g~~~~~l~~~~~~~~~~ 58 (129)
T 3rrq_A 4 PTFSPALLVVTEGDNATFTCSFSNTSE-------------------------SFVLNWYRMSPSNQTDKLAAFPEDRSQP 58 (129)
T ss_dssp CEEECSEEEEETTSCEEEEEECCCCC--------------------------CEEEEEEEEESTTSCEEEEEETC-----
T ss_pred cEECCCEEEEeCCCCEEEEeEecCCCC-------------------------CcEEEEeEeCCCCCccEEEEEcCCccCC
Confidence 356788899999999999999864321 23589998521 11 111110 111
Q ss_pred ecCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCCC-c----ceeeEEEEEcCC
Q psy7941 85 TNNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNPM-T----KQMAFLEVVIPP 137 (238)
Q Consensus 85 ~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~----~~~~~l~v~~~~ 137 (238)
...+||.+.. .....++|+|.+++.+|+|.|+|.+.+... . ...+.|.|...+
T Consensus 59 ~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~s~~~~L~V~~~~ 117 (129)
T 3rrq_A 59 GQDCRFRVTQLPNGRDFHMSVVRARRNDSGTYLCGAISLAPKLQIKESLRAELRVTERR 117 (129)
T ss_dssp ---CCEEEEECTTSSEEEEEESSCCGGGCEEEEEEEEECGGGCEEEECCCEEEEEECCC
T ss_pred CcCCcEEEEEcCCCCEEEEEECCCChhHCEEEEEEEEecCCCceeeEeceEEEEEecCc
Confidence 1246888775 344678999999999999999999976432 1 345678887544
No 411
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.24 E-value=2.6e-11 Score=84.77 Aligned_cols=87 Identities=29% Similarity=0.467 Sum_probs=65.9
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe----eceEEEEEeecCCCeEEEEEeeeC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE----SEVLSLTKVTRSEMGAYQCIAANG 220 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~y~C~~~n~ 220 (238)
+....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+.... ....... ...|.|.++..+|.|.|+|.+.|.
T Consensus 9 p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k-~~~~~~~~~-----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 82 (182)
T 1rhf_A 9 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVK-DGAVVQNLD-----QLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDG 82 (182)
T ss_dssp CEEEEEETTCCEEEEEEEESCSSCCEEEEE-TTEECCSSE-----EEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSC
T ss_pred CcceEEeCCCcEEEEEEEeCCCCCeEEEEE-CCeecCCCC-----ceEEEecCCCceEEEEEeecCcccCeEEEEEEEcC
Confidence 445678899999999999999999999999 554432210 1111111 357999999999999999999998
Q ss_pred CCCCccceEEEEEEeec
Q psy7941 221 VPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 221 ~g~~~~~~~~l~V~~~p 237 (238)
.|...+..+.|.|..+|
T Consensus 83 ~~~~~~~~~~l~V~~~p 99 (182)
T 1rhf_A 83 GETEISQPVWLTVEGVP 99 (182)
T ss_dssp TTCEECCCEEEEEECSC
T ss_pred CCcEEEEEEEEEEecCC
Confidence 77556788889998766
No 412
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}
Probab=99.24 E-value=4.8e-11 Score=76.47 Aligned_cols=99 Identities=18% Similarity=0.307 Sum_probs=63.8
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eeeeeeeEeecCcc
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLAIHEHVITNNAR 89 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~~~~~~~~~~~ 89 (238)
.|..+.+.+|++++|.|.+.... ....+.|++..... +...........+|
T Consensus 2 ~p~~v~~~~G~~v~L~C~~~~~~-------------------------~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~R 56 (110)
T 2q87_A 2 KARTVAGPVGGSLSVQCPYEKEH-------------------------RTLNKYWCRPPQIFLCDKIVETKGSAGKRNGR 56 (110)
T ss_dssp EEEEEEECTTSCEEEEEECCGGG-------------------------TTSEEEEESCCSSSSCCCSEESSSTTCSEETT
T ss_pred CCcEEEEeCCCcEEEEeEecCCc-------------------------CCceEEEEecCCCCCCeEEEEeCCccccccCC
Confidence 35678899999999999986421 12459999965211 11100000012467
Q ss_pred EEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCC-C--cceeeEEEEEcCC
Q psy7941 90 LSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNP-M--TKQMAFLEVVIPP 137 (238)
Q Consensus 90 ~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~--~~~~~~l~v~~~~ 137 (238)
+.+... ....++|+|.+++.+|+|.|+|.+.+.. . ......+.|.+.|
T Consensus 57 ~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~~g~~~~~~~~v~v~V~p 108 (110)
T 2q87_A 57 VSIRDSPANLSFTVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEVEVSVFP 108 (110)
T ss_dssp EEEEEEGGGTEEEEEESSCCGGGCEEEEEEEECTTSCCBCCCSEEEEEEEC-
T ss_pred EEEEEcCcCCEEEEEEccCCHHHCEEEEEEEecCccCccCCccEEEEEEEec
Confidence 777643 4467899999999999999999997653 1 2344556666554
No 413
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.24 E-value=2.9e-11 Score=86.94 Aligned_cols=87 Identities=22% Similarity=0.387 Sum_probs=65.9
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEE---EeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS---VESEVLSLTKVTRSEMGAYQCIAANGV 221 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~n~~ 221 (238)
+..+.+..|+.+.|.|.+.|.|.|.+.|++ ++..+.... ...... .....|.|.++..+|.|.|+|.|.|..
T Consensus 25 p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~-~g~~l~~~~----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 99 (215)
T 3mtr_A 25 PVAVYTWEGNQVNITCEVFAYPSATISWFR-DGQLLPSSN----YSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRI 99 (215)
T ss_dssp CSEEEECTTCCEEEEEEEEEESCCEEEEEE-TTEESSCSS----SCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSS
T ss_pred CceEEEECCCCEEEEEEEeecCCCEEEEEE-CCeECCCCC----CccEEEecCCCeeEEEEecCChhhCeEEEEEEEECC
Confidence 344678899999999999999999999999 555443211 011111 124589999999999999999999999
Q ss_pred CCCccceEEEEEEeec
Q psy7941 222 PPTVSKRLMLHVHCTY 237 (238)
Q Consensus 222 g~~~~~~~~l~V~~~p 237 (238)
|.. +..+.|.|..+|
T Consensus 100 g~~-~~~~~l~v~~~P 114 (215)
T 3mtr_A 100 GQE-SLEFILVQADTP 114 (215)
T ss_dssp CEE-EEEEEEEECCCC
T ss_pred Cce-EEEEEEEECCCC
Confidence 954 777888887655
No 414
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.23 E-value=5.2e-11 Score=84.23 Aligned_cols=88 Identities=30% Similarity=0.414 Sum_probs=65.5
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEee--ceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVES--EVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
+....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+.... .........+ ..|.|.++..+|.|.|+|.+.|..|
T Consensus 11 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~---~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 86 (197)
T 2j8h_A 11 LRNLNVRYQSNATLVCKVTGHPKPIVKWYR-QGKEIIADG---LKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGG 86 (197)
T ss_dssp CCCEEEETTSCEEEEEEEECSSCCEEEEEE-TTEECCCCS---SSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETTE
T ss_pred CCccEEcCCCEEEEEEEEeecCCCEEEEEE-CCEECccCC---CcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECCC
Confidence 445778899999999999999999999999 554443211 1111111122 2799999999999999999999988
Q ss_pred CCccceEEEEEEeec
Q psy7941 223 PTVSKRLMLHVHCTY 237 (238)
Q Consensus 223 ~~~~~~~~l~V~~~p 237 (238)
. .+..+.|.|..+|
T Consensus 87 ~-~~~~~~l~V~~~p 100 (197)
T 2j8h_A 87 S-VSGTASLEVEVPA 100 (197)
T ss_dssp E-EEEEEEEEEEEEE
T ss_pred c-eeEEEEEEEcCCC
Confidence 4 4788888888765
No 415
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Probab=99.23 E-value=1.3e-11 Score=82.38 Aligned_cols=88 Identities=23% Similarity=0.354 Sum_probs=58.9
Q ss_pred cCCcccccccCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCC-CC--CcceE------EEeeceEEEEEe
Q psy7941 135 IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNP-PS--SQKVF------SVESEVLSLTKV 205 (238)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~-~~--~~~~~------~~~~~~l~i~~~ 205 (238)
.+|.+.. .+....+.+|+.+.|.|.+.|.|.|.+.|++++.......... .. ..... ....+.|.|.++
T Consensus 20 ~pP~~~~--~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v 97 (137)
T 3qr2_A 20 HMAGFVQ--APLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTL 97 (137)
T ss_dssp -CCEEEE--CCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSC
T ss_pred CCCeEEc--CCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCC
Confidence 4455543 2455778899999999999999999999999443211100000 00 00111 113458999999
Q ss_pred ecCCCeEEEEEeeeCCCCC
Q psy7941 206 TRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 206 ~~~d~G~y~C~~~n~~g~~ 224 (238)
..+|+|.|+|.|.|..|..
T Consensus 98 ~~~D~G~Y~C~a~N~~G~~ 116 (137)
T 3qr2_A 98 VEEDTGTYECRASNDPDRN 116 (137)
T ss_dssp CGGGCEEEEEEEECCTTSS
T ss_pred CcccCEEEEEEEEecCCcc
Confidence 9999999999999999854
No 416
>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A
Probab=99.22 E-value=6.2e-11 Score=75.57 Aligned_cols=86 Identities=15% Similarity=0.329 Sum_probs=59.4
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eeeeeeeE-e
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLAIHEHV-I 84 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~~~~~~-~ 84 (238)
.+...|..+.+.+|++++|.|.+... +.+.+.|+++.. .. +....... .
T Consensus 3 ~v~q~p~~~~~~~G~~v~L~C~~~~~--------------------------~~~~v~W~r~~~~~~~~~l~~~~~~~~~ 56 (107)
T 1i8k_A 3 ELTQSPASLSVATGEKVTIRCMTSTD--------------------------IDDDMNWYQQKPGEPPKFLISEGNTLRP 56 (107)
T ss_dssp CEEEECSEEECCTTCCEEEEEEESSC--------------------------CTTCEEEEEECTTSCCEEEEETTTEECT
T ss_pred ceEeCCCeEEecCCCCEEEEEEECCC--------------------------CCCcEEEEEECCCCCCEEEEEecCccCC
Confidence 45667888999999999999998632 234699999642 11 11110000 0
Q ss_pred ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
...+|+.+.. ....++|.|.+++.+|+|.|.|.+.+.
T Consensus 57 ~~~~r~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 93 (107)
T 1i8k_A 57 GVPSRFSSSG-TGTDFVFTIENTLSEDVGDYYCLQSFN 93 (107)
T ss_dssp TSCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred CCCCCEEEEc-cCCEEEEEECCCCHHHCEEEEEEEeeC
Confidence 1246787754 346779999999999999999999654
No 417
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Probab=99.22 E-value=4.7e-10 Score=72.64 Aligned_cols=87 Identities=22% Similarity=0.472 Sum_probs=60.9
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeeee--eEe
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIHE--HVI 84 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~--~~~ 84 (238)
+...|..+.+.+|++++|.|.+..... ...+.||+.... .+..... ...
T Consensus 2 ~~q~p~~~~v~~G~~vtL~C~~~~~~~-------------------------~~~v~Wyrq~~~~~~~~l~~~~~~~~~~ 56 (117)
T 3bp6_A 2 LTFYPAWLTVSEGANATFTCSLSNWSE-------------------------DLMLNWNRLSPSNQTEKQAAFSNGLSQP 56 (117)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCT-------------------------TCEEEEEEECTTCCEEEEEEEETTEEEE
T ss_pred ceecCCcEEEeCCCCEEEEeEeecCCC-------------------------CCEEEEEEeCCCCCceEEEEECCCCccc
Confidence 345678889999999999999964211 235999996321 1111111 122
Q ss_pred ecCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 85 TNNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 85 ~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
...+||.+.. .....++|.|.+++.+|+|.|.|.+...
T Consensus 57 ~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 95 (117)
T 3bp6_A 57 VQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISL 95 (117)
T ss_dssp SSCTTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEEEC
T ss_pred cccCcEEEEEcCCCCEEEEEECcCCHHHCEEEEEEEEec
Confidence 3467888865 3457889999999999999999998654
No 418
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.22 E-value=5.1e-11 Score=83.89 Aligned_cols=88 Identities=25% Similarity=0.411 Sum_probs=66.1
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
+....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+... .........+..|.|.++..+|.|.|+|.+.|..|..
T Consensus 14 ~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~-~~~~~~~~----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 88 (192)
T 2iep_A 14 LETVDALVEEVATFMCAVESYPQPEISWTR-NKILIKLF----DTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGA 88 (192)
T ss_dssp CCEEEEETTSCEEEECCEEEESCCEEEEEE-TTEECCTT----CTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSSCC
T ss_pred ccceeeeCCCcEEEEeeCCCCCCCeEEEEE-CCEEcccc----CccEEEcCCccEEEEcCCCcccCeEEEEEEEcCCCce
Confidence 344678899999999999999999999999 55443211 1111222334469999999999999999999998865
Q ss_pred ccceEEEEEEeec
Q psy7941 225 VSKRLMLHVHCTY 237 (238)
Q Consensus 225 ~~~~~~l~V~~~p 237 (238)
.+..+.|.|..+|
T Consensus 89 ~~~~~~l~v~~~p 101 (192)
T 2iep_A 89 VESCGALQVKMKP 101 (192)
T ss_dssp EEEEEEEEEEEEE
T ss_pred eEeEEEEEEEeCC
Confidence 5677778887765
No 419
>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}
Probab=99.22 E-value=1e-10 Score=76.86 Aligned_cols=91 Identities=20% Similarity=0.314 Sum_probs=60.8
Q ss_pred cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--e--eeeeee-eeE
Q psy7941 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--K--AVLAIH-EHV 83 (238)
Q Consensus 9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~--~~~~~~-~~~ 83 (238)
+.+..++..+.+.+|++++|.|.+...... ...+.+.|||... . .+.... ...
T Consensus 2 ~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~----------------------~~~~~v~W~r~~~~~~~~~l~~~~~~~~ 59 (126)
T 4ffy_L 2 IVLTQSPASLAVSLGQRATISCRASESVDH----------------------YGNSFIYWYQQKPGQPPKLLIYLASNLE 59 (126)
T ss_dssp CCEEEECSEEEEETTSCEEEEEEESSCCEE----------------------TTEECEEEEEECTTSCCEEEEETTTEEC
T ss_pred CcEEeCCCeEEEeCCCCEEEEEecCCCccc----------------------CCCceEEEEEECCCCCCEEEEEEcCccC
Confidence 456777888999999999999999643200 0023599999632 1 111110 111
Q ss_pred eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
.....||.+.. ....++|+|.+++.+|+|.|+|.+.+.
T Consensus 60 ~~~~~r~~~~~-~~~~~sL~I~~v~~~DsG~Y~C~~~~~ 97 (126)
T 4ffy_L 60 SGVPARFSGSG-SETDFTLTIDSVETDDAATYYCQQNNE 97 (126)
T ss_dssp TTSCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred CCCCCcEEEec-CCCEEEEEECCCCHHHCEEEEEEEecC
Confidence 11246777763 346779999999999999999999654
No 420
>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L
Probab=99.22 E-value=1.2e-10 Score=78.25 Aligned_cols=101 Identities=19% Similarity=0.256 Sum_probs=66.3
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeee-ee
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIH-EH 82 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~-~~ 82 (238)
.+.+..++..+.+.+|++++|.|.+.... .+.+.||++... .+.... ..
T Consensus 16 ~~~v~q~p~~v~v~~G~sVtL~C~~s~~~--------------------------~~~v~Wyrq~~g~~~~~li~~~~~~ 69 (146)
T 2yc1_B 16 EIVLTQSPATLSVSPGERATLSCRASQSV--------------------------RSYLAWYQQKPGQAPRLLFSDASNR 69 (146)
T ss_dssp CCCEEEECSEEEECTTSCEEEEEEESSCC--------------------------TTCEEEEEECTTSCCEEEEETTTEE
T ss_pred cceEEEeCCEEEEecCCCEEEEEEECCCC--------------------------CCEEEEEEECCCCCCEEEEEeCCcc
Confidence 45667778899999999999999986422 345999996421 111111 01
Q ss_pred EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEc
Q psy7941 83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVI 135 (238)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~ 135 (238)
......||.+.. ....++|+|.+++.+|+|.|+|.+.+.... ...+.|.|..
T Consensus 70 ~~~~~~Rfs~~~-~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~fg~GT~L~V~~ 123 (146)
T 2yc1_B 70 ATGIPARFTGSG-SGTDFTLTISSLEPEDFAIYYCQQYRYSPRTFGQGTKVEIKR 123 (146)
T ss_dssp CTTCCTTEEEEE-ETTEEEEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEEC-
T ss_pred CCCcCCCeEEec-CCCEEEEEECCCCHHHCEEEEEEEecCCCCeECCCEEEEEeC
Confidence 111246887764 345779999999999999999999654221 1234566653
No 421
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A
Probab=99.22 E-value=5.7e-11 Score=75.12 Aligned_cols=80 Identities=23% Similarity=0.344 Sum_probs=58.6
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeec---eEEEEEeecCCCeEEEEEeeeCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE---VLSLTKVTRSEMGAYQCIAANGV 221 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~n~~ 221 (238)
+....+.+|+.+.|.|.+.+.|.+ +.|++ ++..+... .......++ .|.|.++..+|+|.|+|. .
T Consensus 15 ~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k-~~~~l~~~------~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----~ 82 (103)
T 2e7b_A 15 LKDLEVLEGGAATLRCVLSSVAAP-VKWCY-GNNVLRPG------DKYSLRQEGAMLELVVRNLRPQDSGRYSCS----F 82 (103)
T ss_dssp CCCEEEESSSCEEEEEECSSCCCS-CEEEE-SSSBCCCS------SSEEEEECSSEEEEEECSCCTTTCCCEEEE----C
T ss_pred CccEEEECCCcEEEEEEEeCCCCC-eEEEE-CCEECCCC------CcEEEEEcCCEEEEEEccCCcccCEEEEEE----E
Confidence 455778999999999999999888 99999 44433211 111222222 599999999999999998 4
Q ss_pred CCCccceEEEEEEeec
Q psy7941 222 PPTVSKRLMLHVHCTY 237 (238)
Q Consensus 222 g~~~~~~~~l~V~~~p 237 (238)
| ..+..+.|.|..+|
T Consensus 83 g-~~~~~~~l~V~~~p 97 (103)
T 2e7b_A 83 G-DQTTSATLTVTALP 97 (103)
T ss_dssp S-SCBCCBCEEEECCC
T ss_pred C-CcEEEEEEEEEecc
Confidence 4 33667778888877
No 422
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.21 E-value=3e-11 Score=86.19 Aligned_cols=82 Identities=17% Similarity=0.315 Sum_probs=61.4
Q ss_pred eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccc
Q psy7941 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSK 227 (238)
Q Consensus 148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~ 227 (238)
..+.+|+.+.|.|.+.|.|.|.+.|++..+..+.. ..........|.|.++..+|.|.|+|.|.|..|. .++
T Consensus 11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~~-------~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~-~~~ 82 (202)
T 1vca_A 11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNG-------KVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRK-LEK 82 (202)
T ss_dssp EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSS-------EEEEETTEEEEEESSCCGGGCSEEEEEEEETTEE-EEE
T ss_pred EEEcCCCcEEEEEeecCCCCCeEEEECCCCCCccc-------eEEEcCCccEEEECcCCHHHCEEEEEEEEECCce-Eee
Confidence 34558999999999999999999999843222110 0111112346999999999999999999999884 478
Q ss_pred eEEEEEEeec
Q psy7941 228 RLMLHVHCTY 237 (238)
Q Consensus 228 ~~~l~V~~~p 237 (238)
.+.|.|..+|
T Consensus 83 ~~~l~V~~~p 92 (202)
T 1vca_A 83 GIQVEIYSFP 92 (202)
T ss_dssp EEEEEEEBCC
T ss_pred EEEEEEEeCC
Confidence 8899998765
No 423
>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A
Probab=99.21 E-value=6.8e-11 Score=75.88 Aligned_cols=88 Identities=18% Similarity=0.280 Sum_probs=61.2
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeeeee-
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIHEH- 82 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~~- 82 (238)
.+.+...|..+.+.+|++++|.|.+... +.+.+.|++.... .+......
T Consensus 4 ~~~v~q~p~~~~~~~G~~v~L~C~~~~~--------------------------~~~~v~W~r~~~~~~~~~l~~~~~~~ 57 (111)
T 1i3g_L 4 DIVLTQSHKFMSTSVGDRVSITCKASQD--------------------------VGTAVAWYQQKPGQSPKLLIYWASTR 57 (111)
T ss_dssp CCCEEESCSEEECCTTCCEEEEEEESSC--------------------------CTTCEEEEEECTTSCCEEEEETTTEE
T ss_pred cceEEEeCCEEEEcCCCCEEEEEEeCCC--------------------------CCCCEEEEEECCCCCCEEEEEECCcc
Confidence 4556777888999999999999998642 1346999996521 11111100
Q ss_pred EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
.....+|+.+.. ....++|+|.+++.+|+|.|.|.+.+.
T Consensus 58 ~~~~~~R~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 96 (111)
T 1i3g_L 58 HTGVPDRFTGSG-SGTDFTLTISNVQSEDLADYFCQQYSS 96 (111)
T ss_dssp CTTCCTTEEEEE-ETTEEEEEESSCCGGGCSEEEEEECSS
T ss_pred CCCCCCcEEEEc-CCCEEEEEECCCCHHHCEEEEEEEecC
Confidence 011246787764 346679999999999999999999654
No 424
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=1e-10 Score=74.77 Aligned_cols=95 Identities=16% Similarity=0.127 Sum_probs=63.4
Q ss_pred CcccccccCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCC----CCCcceEEEee---ceEEEEEeecCC
Q psy7941 137 PDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNP----PSSQKVFSVES---EVLSLTKVTRSE 209 (238)
Q Consensus 137 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~----~~~~~~~~~~~---~~l~i~~~~~~d 209 (238)
|.+.+.....+..+.+|+.+.|.|.+.+ .|.+.|++ ++..+...... +.........+ ..|.|.++..+|
T Consensus 7 p~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~k-nG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D 83 (112)
T 2e6q_A 7 GTARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFL-NGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQD 83 (112)
T ss_dssp SCCCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEE-SSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTT
T ss_pred CCcEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEE-CCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHH
Confidence 3333334456788999999999999987 77899999 55555332100 00002222222 279999999999
Q ss_pred CeEEEEEeeeCCCCCccceEEEEEEeecC
Q psy7941 210 MGAYQCIAANGVPPTVSKRLMLHVHCTYL 238 (238)
Q Consensus 210 ~G~y~C~~~n~~g~~~~~~~~l~V~~~p~ 238 (238)
+|.|+|...+ ....+..|.|..+|.
T Consensus 84 ~G~Y~~~~~~----~~~ssA~L~V~~~p~ 108 (112)
T 2e6q_A 84 SGALVGFSCP----GVQDSAALTIQESSG 108 (112)
T ss_dssp CSEEEEEEET----TEEEEEEEEEECSSC
T ss_pred CccEEEEEEC----CeeEEEEEEEeCCCc
Confidence 9999875543 235678899998874
No 425
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell surface receptor, triggering receptor, platelet receptor, ITIM, immune system; 1.19A {Homo sapiens}
Probab=99.21 E-value=2.3e-10 Score=72.60 Aligned_cols=85 Identities=14% Similarity=0.225 Sum_probs=56.8
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee---eeee-eeeEeecCcc
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA---VLAI-HEHVITNNAR 89 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~---~~~~-~~~~~~~~~~ 89 (238)
.|..+.+.+|++++|+|.++.... ...+.|++..... .... ........+|
T Consensus 3 ~p~~v~~~~G~svtl~C~~s~~~~-------------------------~~~~~Wyrq~~g~~~~li~~~~~~~~~~~~R 57 (106)
T 2frg_P 3 LPEVLQAPVGSSILVQCHYRLQDV-------------------------KAQKVWCRFLPEGCQPLVSSAVDRRAPAGRR 57 (106)
T ss_dssp SCEEEEECTTCCEEEEEECCGGGT-------------------------TSEEEEEEEETTEEEEEEECCBTCEEEETTT
T ss_pred CCcEEEEecCCcEEEEeEecCCcc-------------------------cCcEEEEECCCCCCcEEEEeCCcEeeecCCC
Confidence 456778899999999999863211 1237899864221 1111 1111223568
Q ss_pred EEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941 90 LSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 90 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
|.+.....+.++|+|.+++.+|+|.|.|.+....
T Consensus 58 ~s~~~~~~~~~~L~I~~l~~~Dsg~Y~C~~~~~~ 91 (106)
T 2frg_P 58 TFLTDLGGGLLQVEMVTLQEEDAGEYGCMVDGAR 91 (106)
T ss_dssp EEEEEEETTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred EEEEcCCCCEEEEEEccCCHHHCEEEEEEeecCC
Confidence 8875445567899999999999999999986543
No 426
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.21 E-value=3.7e-11 Score=76.45 Aligned_cols=80 Identities=16% Similarity=0.204 Sum_probs=56.2
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
+....+.+|+.+.|.|.+.+.|.+ +.|++ ++..+.... ....... ...|.|.++..+|+|.|+|.|.|...
T Consensus 15 ~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k-~g~~~~~~~-----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~ 87 (106)
T 2dlt_A 15 IADLTVKAAEQAVFKCEVSDEKVT-GKWYK-NGVEVRPSK-----RITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYAL 87 (106)
T ss_dssp CCCEEEESSCCEECCCEESCSSCE-EEEEE-SSCBCCCCS-----SCEEEEETTEEEEEESSCCTTTCSCEEEEEETSCC
T ss_pred CCCeEEeCCCeEEEEEEEcCCCcc-eEEEc-CCEECcCCC-----CEEEEEeCCEEEEEECCCCcCCCEEEEEEEccCCc
Confidence 455778999999999999998877 99999 444332211 1111111 23799999999999999999999833
Q ss_pred CCccceEEEEEE
Q psy7941 223 PTVSKRLMLHVH 234 (238)
Q Consensus 223 ~~~~~~~~l~V~ 234 (238)
+.++.|.|.
T Consensus 88 ---~~~~~l~V~ 96 (106)
T 2dlt_A 88 ---SLSAKLNFL 96 (106)
T ss_dssp ---CCCBCEEEE
T ss_pred ---eEEEEEEEE
Confidence 344444554
No 427
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*
Probab=99.21 E-value=2e-10 Score=76.12 Aligned_cols=99 Identities=17% Similarity=0.319 Sum_probs=65.6
Q ss_pred cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCc
Q psy7941 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNA 88 (238)
Q Consensus 9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ 88 (238)
..+...+..+.+.+|+++.|.|.+... +.+.||++...... .......+
T Consensus 18 ~~v~q~p~~~~v~~G~~v~L~C~~~~~----------------------------~~v~W~r~~~g~~~---~~l~~~~~ 66 (133)
T 3khq_A 18 SQIWQHPRFAAKKRSSMVKFHCYTNHS----------------------------GALTWFRKRGSQQP---QELVSEEG 66 (133)
T ss_dssp CSEEEECSEEEECTTCCEEEEEEESSS----------------------------SCEEEEEECTTSCC---EECCCTTT
T ss_pred CceEEcCceEEEeCCCeEEEEEEeCCC----------------------------CEEEEEEeCCCCCC---EEEEEeCC
Confidence 356777889999999999999999642 35999997321100 00112456
Q ss_pred cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-----cceeeEEEEEcCCcc
Q psy7941 89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-----TKQMAFLEVVIPPDI 139 (238)
Q Consensus 89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-----~~~~~~l~v~~~~~~ 139 (238)
||.+... ...++|.|.+++.+|+|.|+|.+.+... ....+.|.|...|.+
T Consensus 67 r~~~~~~-~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~g~gt~L~V~~~p~~ 121 (133)
T 3khq_A 67 RIVQTQN-GSVYTLTIQNIQYEDNGIYFCKQKCDSANHNVTDSCGTELLVLGFSTL 121 (133)
T ss_dssp TEEEEEE-TTEEEEEECSCCGGGCEEEEEEESSCC-------CCCEEEEEC-----
T ss_pred CEEEEcC-CCEEEEEECCCChHHCEEEEEEEEeCCCCcceeECCCEEEEEEecccc
Confidence 7877653 3567999999999999999999976531 233456777654433
No 428
>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1
Probab=99.20 E-value=3.8e-11 Score=76.70 Aligned_cols=86 Identities=19% Similarity=0.325 Sum_probs=58.3
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeee-eeEe
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIH-EHVI 84 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~-~~~~ 84 (238)
.+..+|..+.+.+|++++|.|.+... +.+.+.|++.... .+.... ....
T Consensus 3 ~v~q~p~~~~v~~G~~v~L~C~~~~~--------------------------~~~~v~W~r~~~~~~~~~l~~~~~~~~~ 56 (108)
T 1qfw_M 3 ELTQSPKSMSMSVGERVTLSCKASET--------------------------VDSFVSWYQQKPEQSPKLLIFGASNRFS 56 (108)
T ss_dssp CEEEECSCEECCTTCCEEEEEEESSC--------------------------CCSCEEEEEECTTSCCEEEECSSSCBCT
T ss_pred cEEEeCCeEEEcCCCCEEEEeeeCCC--------------------------CCcEEEEEEECCCCCCEEEEEEcCccCC
Confidence 35567788899999999999998642 2346999996421 111110 0000
Q ss_pred ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
...+|+.+.. ....++|.|.+++.+|+|.|+|.+.+.
T Consensus 57 ~~~~r~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 93 (108)
T 1qfw_M 57 GVPDRFTGSG-SATDFTLTISSVQAEDFADYHCGQTYN 93 (108)
T ss_dssp TCCTTEECCB-CSSEEEEEESSCCTTCCSEEEEEECSS
T ss_pred CCCCcEEEEc-CCCEEEEEECCCChhhCEEEEEEEccC
Confidence 1245776643 345679999999999999999999654
No 429
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B
Probab=99.20 E-value=2.4e-10 Score=73.52 Aligned_cols=84 Identities=21% Similarity=0.442 Sum_probs=58.9
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eeeeeeeEeec
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLAIHEHVITN 86 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~~~~~~~~~ 86 (238)
+...+..+.+.+|+++.|.|.+... .+.+.|+|+.. .. +...... ...
T Consensus 4 v~q~p~~~~v~~G~~v~L~C~~~~~---------------------------~~~v~W~r~~~~~~~~~l~~~~~~-~~~ 55 (113)
T 1h5b_A 4 VEQSPSALSLHEGTDSALRCNFTTT---------------------------MRSVQWFRQNSRGSLISLFYLASG-TKE 55 (113)
T ss_dssp EEEECSEEEEETTCCEEEEEEESSC---------------------------CSEEEEEEECTTSCEEEEEEESSS-EEE
T ss_pred eEECCCEEEEecCCcEEEEEEECCC---------------------------CceEEEEEECCCCCeEEEEEECCC-Ccc
Confidence 4567888999999999999998631 13599998642 11 1111100 123
Q ss_pred CccEEEEEc--CCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 87 NARLSVTHN--DANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 87 ~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
.+|+.+... ....++|.|.+++.+|+|.|+|.+.+.
T Consensus 56 ~~r~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~ 93 (113)
T 1h5b_A 56 NGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCAAEAS 93 (113)
T ss_dssp ETTEEEECCSSSSSEEEEEECSCCGGGCEEEEEEEECS
T ss_pred CCceEEEEccCCCCEEEEEECCCChhhCEEEEEEEecC
Confidence 456766543 346789999999999999999999764
No 430
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=2.8e-10 Score=71.91 Aligned_cols=80 Identities=23% Similarity=0.410 Sum_probs=58.8
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeec---eEEEEEeecCCCeEEEEEeeeCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE---VLSLTKVTRSEMGAYQCIAANGV 221 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~n~~ 221 (238)
+....+.+|+.+.|.|. .+.|.+.+.|+++ +..+... ........+ .|.|.++..+|+|.|+|. .
T Consensus 15 ~~~~~v~~G~~v~l~C~-~~~p~~~v~W~k~-~~~l~~~------~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----~ 82 (103)
T 2dku_A 15 LTNLQVEEKGTAVFTCK-TEHPAATVTWRKG-LLELRAS------GKHQPSQEGLTLRLTISALEKADSDTYTCD----I 82 (103)
T ss_dssp CCCEEEETTSEEEEEEE-CSSCCSCCEEEES-SCBCCSS------SSEEEEEETTEEEEEEESCCTTTCSEEEEE----C
T ss_pred CCcEEEeCCCcEEEEEE-eCCCCCeEEEEeC-CEECCCC------CeEEEEeCCCEEEEEECCCCcccCEEEEEE----e
Confidence 45678899999999999 4888899999994 4433211 112222233 799999999999999998 5
Q ss_pred CCCccceEEEEEEeec
Q psy7941 222 PPTVSKRLMLHVHCTY 237 (238)
Q Consensus 222 g~~~~~~~~l~V~~~p 237 (238)
| ..+..+.|.|..+|
T Consensus 83 g-~~~~~~~l~V~~~p 97 (103)
T 2dku_A 83 G-QAQSRAQLLVQGRR 97 (103)
T ss_dssp S-SCBCCEEEEEECSC
T ss_pred C-CceEEEEEEEeCcc
Confidence 5 33667888888765
No 431
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.20 E-value=1e-10 Score=82.17 Aligned_cols=86 Identities=22% Similarity=0.397 Sum_probs=64.5
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe---eceEEEEEeecCCCeEEEEEeeeCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE---SEVLSLTKVTRSEMGAYQCIAANGV 221 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~y~C~~~n~~ 221 (238)
+....+.+|+.+.|.|.+.+.|. .+.|+++++..+... ....... ...|.|.++..+|+|.|+|.+.|..
T Consensus 9 ~~~~~v~~G~~v~L~C~~~~~p~-~v~W~~~~~~~~~~~------~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 81 (189)
T 2v44_A 9 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIIST------QRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAK 81 (189)
T ss_dssp CSEEEEETTCCEEEEEEEEECCS-EEEEECTTSCBCCCC------SSEEEEEETTEEEEEECSCCGGGCEEEEEEEECTT
T ss_pred CCceEEecCCcEEEEEEeecCCe-eEEEEeCCCCccCCC------ceEEEECCCCeEEEEEccCCcccCeEEEEEEEeCC
Confidence 34466889999999999988877 999999555443221 1112222 2379999999999999999999998
Q ss_pred CCCccceEEEEEEeec
Q psy7941 222 PPTVSKRLMLHVHCTY 237 (238)
Q Consensus 222 g~~~~~~~~l~V~~~p 237 (238)
|...+..+.|.|..+|
T Consensus 82 g~~~~~~~~l~v~~~p 97 (189)
T 2v44_A 82 GQTQEATVVLEIYQKL 97 (189)
T ss_dssp SCEEEEEEEEEEECCC
T ss_pred CCcEEEEEEEEEecCC
Confidence 8655778888887665
No 432
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=99.20 E-value=9.2e-11 Score=73.01 Aligned_cols=78 Identities=21% Similarity=0.357 Sum_probs=55.9
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
+....+.+|+.+.|.|.+ +.|.+.+.|++ ++..+.... ....... ...|.|.++..+|+|.|+|.+ |
T Consensus 15 ~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k-~~~~l~~~~-----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----g 83 (95)
T 2k1m_A 15 PRSVEVAAGSPAVFEAET-ERAGVKVRWQR-GGSDISASN-----KYGLATEGTRHTLTVREVGPADQGSYAVIA----G 83 (95)
T ss_dssp CCCEEEETTSCEEEEEEC-SSSSCCCEEEC-SSSEECSST-----TCEEEEETTEEEEEESSCCTTCCSEEEEEE----T
T ss_pred CCcEEEeCCCcEEEEEEe-CCCCCeEEEEE-CCEECCCCC-----cEEEEEcCCEEEEEEcCCCcccCEEEEEEE----C
Confidence 456778999999999999 78888999999 444442211 1111111 236999999999999999999 4
Q ss_pred CCccceEEEEEE
Q psy7941 223 PTVSKRLMLHVH 234 (238)
Q Consensus 223 ~~~~~~~~l~V~ 234 (238)
..+.++.|.|.
T Consensus 84 -~~~~~~~l~V~ 94 (95)
T 2k1m_A 84 -SSKVKFDLKVI 94 (95)
T ss_dssp -TEEEEEEEEEE
T ss_pred -CceEEEEEEEe
Confidence 33556777765
No 433
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.19 E-value=1.9e-10 Score=81.24 Aligned_cols=86 Identities=30% Similarity=0.492 Sum_probs=64.2
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGVP 222 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~g 222 (238)
+....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+.... ....... ...|.|.++..+|+|.|+|.+.|..|
T Consensus 14 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~-----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~ 87 (197)
T 3lcy_A 14 MKDVTTKLGEAAQLSCQIVGRPLPDIKWYR-FGKELIQSR-----KYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVG 87 (197)
T ss_dssp CCCEEEETTSEEEEEEEEEEESCCEEEEEE-TTEEECCCS-----SEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSC
T ss_pred CCceEEeCCCcEEEEEEEecCCCCEEEEEE-CCEECCCCc-----cEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCC
Confidence 345678899999999999999999999999 554442211 1111111 22799999999999999999999988
Q ss_pred CCccceEEEEEEeec
Q psy7941 223 PTVSKRLMLHVHCTY 237 (238)
Q Consensus 223 ~~~~~~~~l~V~~~p 237 (238)
. ....+.|.|..+|
T Consensus 88 ~-~~~~~~l~v~~~p 101 (197)
T 3lcy_A 88 E-VETSSKLLLQATP 101 (197)
T ss_dssp E-EEEEEEEEEEEEE
T ss_pred c-eeEEEEEEEEcCC
Confidence 4 4677788887765
No 434
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A 3qib_C 2ial_A 2iam_C 2ian_D 4e41_D 4e42_A 3rug_E* 3axl_A
Probab=99.18 E-value=5.8e-10 Score=79.14 Aligned_cols=125 Identities=19% Similarity=0.346 Sum_probs=76.2
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--e--eeeeeeeeEee
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--K--AVLAIHEHVIT 85 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~--~~~~~~~~~~~ 85 (238)
.+.+.+..+.+.+|+++.|.|.+... ...+.||++.. . .+....... .
T Consensus 5 ~V~Q~p~~v~v~~G~svtL~C~~s~~---------------------------~~~v~Wyrq~~g~~~~~l~~~~~~~-~ 56 (205)
T 3qjh_A 5 QVEQSPSALSLHEGTGSALRCNFTTT---------------------------MRAVQWFRKNSRGSLINLFYLASGT-K 56 (205)
T ss_dssp CBEEECSEEEEETTCCEEEEEECSSC---------------------------EEEEEEEEEC-CCCEEEEEEESSEE-E
T ss_pred eEEEeCCEEEEeCCCCEEEEEEEECC---------------------------cceEEEEEECCCCCcEEEEEECCCC-c
Confidence 35567888999999999999998643 12489999642 1 111111111 2
Q ss_pred cCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCC--C--cceeeEEEEEcC---CcccccccCCceeecCCCcEE
Q psy7941 86 NNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNP--M--TKQMAFLEVVIP---PDISSEETSGDMMVPEGGSAK 157 (238)
Q Consensus 86 ~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~--~~~~~~l~v~~~---~~~~~~~~~~~~~~~~g~~~~ 157 (238)
..+||.... .....++|+|.+++.+|+|.|+|.+.... . -...+.|.|... +.+.+.. . ......+.
T Consensus 57 ~~~Rfs~~~~~~~~~~sL~I~~l~~~DsG~Y~Cav~~~~~~~~~fG~GT~L~V~~~~~~~~p~V~~----l-~~~~~~~t 131 (205)
T 3qjh_A 57 ENGRLKSAFDSKERYSTLHIRDAQLEDSGTYFCAAEASNTNKVVFGTGTRLQVLPNIQNPDPAVYQ----L-RDSKSSDK 131 (205)
T ss_dssp EETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTTCCEEEBCCEEEEEECCCSSCCCEEEE----E-EBCC--CC
T ss_pred cCCCEEEEEcCCCCEEEEEEeccccccCeEEEEEEEcCCCCccccCCCEEEEEeCcccCCCCEEEE----e-cccCCCcE
Confidence 356787764 44578899999999999999999986321 1 112345777632 1111110 0 11122478
Q ss_pred EEEEEccccC
Q psy7941 158 LVCKAKGYPT 167 (238)
Q Consensus 158 l~C~~~~~p~ 167 (238)
|.|.+.+..+
T Consensus 132 l~Cl~~~f~P 141 (205)
T 3qjh_A 132 SVCLFTDFDS 141 (205)
T ss_dssp EEEEEESCCT
T ss_pred EEEEEEcccc
Confidence 9999988543
No 435
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A
Probab=99.18 E-value=2.3e-10 Score=73.36 Aligned_cols=85 Identities=21% Similarity=0.379 Sum_probs=59.3
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCcc
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNAR 89 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~ 89 (238)
.+...|..+.+.+|++++|.|.+.... .+.+.+.|+++...... ...+...+|
T Consensus 2 ~v~q~p~~~~~~~G~~v~L~C~~~~~~------------------------~~~~~v~W~r~~~~~~~---~~~~~~~~r 54 (111)
T 2ywz_A 2 WVDQTPRTITKETGESLTIKCVLKDHS------------------------CGLSSTTWYRTQLGSTN---EKTISIGGR 54 (111)
T ss_dssp EEEEECSEEEECTTCCEEEEEEEESCS------------------------SCCCEEEEEEEETTCCC---CEECCSBTT
T ss_pred eeEECCCcEEEccCCCEEEEeEECCCC------------------------CCCCEEEEEEeCCCCCc---eEeeEeCCC
Confidence 355678889999999999999996421 12456999996321100 011223467
Q ss_pred EEEEE-cCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941 90 LSVTH-NDANTWTLNIRSVRREDRGYYMCQVNT 121 (238)
Q Consensus 90 ~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 121 (238)
+.... .....++|.|.+++.+|+|.|+|.+.+
T Consensus 55 ~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 87 (111)
T 2ywz_A 55 YDETVDKGSKSFSLRISDLRVEDSGTYKCQADY 87 (111)
T ss_dssp EEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCChhcCEEEEEEEEc
Confidence 76543 334677999999999999999999976
No 436
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1
Probab=99.18 E-value=2.5e-10 Score=74.63 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=61.6
Q ss_pred ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----e-eeee-eeeEe--
Q psy7941 13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----A-VLAI-HEHVI-- 84 (238)
Q Consensus 13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~-~~~~-~~~~~-- 84 (238)
..+..+.+.+|+++.|.|.+..... +.+.+.+.|++.+.. . .... .....
T Consensus 4 ~~~~~v~~~~G~~v~L~C~~~~~~~----------------------~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~ 61 (124)
T 1neu_A 4 YTDREVYGAVGSQVTLHCSFWSSEW----------------------VSDDISFTWRYQPEGGRDAISIFHYAKGQPYID 61 (124)
T ss_dssp ECCSEEEEETTSCEEECCEEECSSC----------------------CCSCCEEEEEEEETTCCCCEEEEEEETTEEEEC
T ss_pred ecCCeEEEEeCCeEEEEeEEeCCCC----------------------CCCceEEEEEEcCCCCCceEEEEEecCCeeccc
Confidence 4566788999999999999864210 112456999986431 1 1111 11111
Q ss_pred ---ecCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCCCc---ceeeEEEEEcCC
Q psy7941 85 ---TNNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPMT---KQMAFLEVVIPP 137 (238)
Q Consensus 85 ---~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~l~v~~~~ 137 (238)
...+|+.+... ....++|.|.+++.+|+|.|+|.+.+.... ...+.|.|..+|
T Consensus 62 ~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~v~L~V~~~p 121 (124)
T 1neu_A 62 EVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKV 121 (124)
T ss_dssp SSSTTTTCEEECCBGGGTBCCEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEEC--
T ss_pred cCccccCcEEEecCCcCCeEEEEEccCChhhCEEEEEEEEcCCCCcCcEeeEEEEEecCC
Confidence 11456665432 234568999999999999999999765332 345566666543
No 437
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Probab=99.18 E-value=1.2e-09 Score=72.45 Aligned_cols=101 Identities=22% Similarity=0.390 Sum_probs=66.7
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeeee--eE
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIHE--HV 83 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~--~~ 83 (238)
.+...+..+.+.+|++++|.|.+..... ...+.||++... .+..... ..
T Consensus 11 ~v~Q~p~~v~v~~G~~vtL~C~~~~~~~-------------------------~~~v~Wyrq~~g~~~~~l~~~~~~~~~ 65 (134)
T 3bik_B 11 SLTFYPAWLTVSEGANATFTCSLSNWSE-------------------------DLMLNWNRLSPSNQTEKQAAFSNGLSQ 65 (134)
T ss_dssp CEEEECSEEEEETTSCEEEEEEESSCCT-------------------------TCEEEEEEECTTCCEEEEEEEETTEEE
T ss_pred cEEECCCeEEEeCCCCEEEEEEeCCCCC-------------------------CcEEEEEEcCCCCCceEEEEEcCCCCC
Confidence 4556788899999999999999864211 235999996321 1111111 11
Q ss_pred eecCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCCCc-----ceeeEEEEEc
Q psy7941 84 ITNNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNPMT-----KQMAFLEVVI 135 (238)
Q Consensus 84 ~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-----~~~~~l~v~~ 135 (238)
....+||.+.. .....++|.|.+++.+|+|.|.|.+...... ...+.|.|..
T Consensus 66 ~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~~~gt~L~V~~ 123 (134)
T 3bik_B 66 PVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLHPKAKIEESPGAELVVTE 123 (134)
T ss_dssp ESSCTTEEEEECTTSSEEEEEECSCCGGGCEEEEEEEEECSSSCEEEECCCEEEEEEC
T ss_pred cccCCCEEEEecCCCCEEEEEECCCChHHCEEEEEEEEeCCCCceEEEcCCEEEEEeC
Confidence 22367888764 3456789999999999999999998654321 1234566654
No 438
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A
Probab=99.18 E-value=2.6e-10 Score=74.62 Aligned_cols=85 Identities=22% Similarity=0.341 Sum_probs=60.0
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCcc
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNAR 89 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~ 89 (238)
.+.++|..+.+.+|++++|.|.++... .+.+.+.||++...... ...+...+|
T Consensus 2 ~V~Q~p~~v~v~~G~svtL~C~~s~~~------------------------~~~~~v~Wyrq~~g~~~---~~li~~~~R 54 (126)
T 3moq_A 2 WVDQTPRTATKETGESLTINCVLRDAS------------------------FELKDTGWYRTKLGSTN---EQSISIGGR 54 (126)
T ss_dssp EEEEECSEEEEETTCCEEEEEEEESCS------------------------SCCCEEEEEEEETTCCC---CEECCCBTT
T ss_pred ceEECCceEEEeCCCCEEEEEEeecCc------------------------cCCceEEEEEeCCCCCc---eEEEEeCCc
Confidence 456788899999999999999997431 12346999995321110 111223567
Q ss_pred EEEEEc-CCCeEEEEEcccCcccCeEEEEEEec
Q psy7941 90 LSVTHN-DANTWTLNIRSVRREDRGYYMCQVNT 121 (238)
Q Consensus 90 ~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~ 121 (238)
|..... ....++|+|.+++.+|+|.|+|.+.+
T Consensus 55 ~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~ 87 (126)
T 3moq_A 55 YVETVNKGSKSFSLRISDLRVEDSGTYKCQAFY 87 (126)
T ss_dssp EEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred EEEEEeCCCCEEEEEECcCChHhCEEEEEEEEE
Confidence 776543 34678999999999999999999955
No 439
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.18 E-value=7.2e-11 Score=83.47 Aligned_cols=92 Identities=20% Similarity=0.309 Sum_probs=65.7
Q ss_pred CCceeecCCCcEEEEEEEc-cccCCeEEEEeCCCeeeEeecC------CCCCcceEEEeeceEEEEEeecCCCeEEEEEe
Q psy7941 145 SGDMMVPEGGSAKLVCKAK-GYPTPKITWRREDNKEIIVRSN------PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIA 217 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 217 (238)
+....+.+|+.+.|.|.+. +.|.+.+.|++ ++..+..... ..............|.|.++..+|.|.|+|.+
T Consensus 9 p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 87 (195)
T 2c5d_C 9 PGNITGARGLTGTLRCQLQVQGEPPEVHWLR-DGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLV 87 (195)
T ss_dssp CCCEEECTTCCEEEEEEEEEESSCCCCEEEE-TTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEE
T ss_pred hhheEEecCCcEEEecccccCCCCcEEEEEE-CCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCcEEEEEE
Confidence 4567789999999999998 89999999999 5544422100 00000000111457999999999999999999
Q ss_pred eeCCCCCccceEEEEEEeec
Q psy7941 218 ANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 218 ~n~~g~~~~~~~~l~V~~~p 237 (238)
.|..|...+..+.|.|..+|
T Consensus 88 ~~~~~~~~~~~~~l~V~~~p 107 (195)
T 2c5d_C 88 FLGHQTFVSQPGYVGLEGLP 107 (195)
T ss_dssp EETTEEEECCCEEEEECCSC
T ss_pred EeCCCceecccEEEEEecCC
Confidence 99887655666888887766
No 440
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}
Probab=99.17 E-value=1.8e-10 Score=74.48 Aligned_cols=102 Identities=18% Similarity=0.291 Sum_probs=60.6
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCC-CceEEEEeCCceeeeee--e--eeEeecCc
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSS-AMKVAWIKADTKAVLAI--H--EHVITNNA 88 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~W~~~~~~~~~~~--~--~~~~~~~~ 88 (238)
.+..+.+.+|+++.|.|.+....... . ...+.|++++....... . ........
T Consensus 6 ~p~~v~~~~G~~v~L~C~~~~~~~~~----------------------~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~ 63 (118)
T 3udw_C 6 APTQVPGFLGDSVTLPCYLQVPNMEV----------------------THVSQLTWARHGESGSMAVFHQTQGPSYSESK 63 (118)
T ss_dssp CCSEEEEETTSCEEECCEEECCTTCC----------------------CEEEEEEEEETTCSBCSEEEETTTEEEETTCS
T ss_pred CCCeEEEeeCCcEEEEEEeECCCCCC----------------------CceEEEEEEEcCCCceEEEEeCCCCCccCCcC
Confidence 34458899999999999995321110 0 11489999743221111 0 11111244
Q ss_pred cEEEEEcCC----CeEEEEEcccCcccCeEEEEEEec-C-CCcceeeEEEEEcCC
Q psy7941 89 RLSVTHNDA----NTWTLNIRSVRREDRGYYMCQVNT-N-PMTKQMAFLEVVIPP 137 (238)
Q Consensus 89 ~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~~~-~-~~~~~~~~l~v~~~~ 137 (238)
|+.+..... +.++|.|.+++.+|+|.|+|.+.+ . +.....+.|.|.++|
T Consensus 64 r~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~L~V~~~P 118 (118)
T 3udw_C 64 RLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118 (118)
T ss_dssp SEEETTCCTTSCCCBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEC--
T ss_pred cEEEecccccCCCCCcEEEEeecChHHCeEEEEEEEECCCCCccceEEEEEEeCC
Confidence 555433211 266999999999999999999976 3 233445667776654
No 441
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Probab=99.17 E-value=1.2e-11 Score=80.95 Aligned_cols=84 Identities=17% Similarity=0.237 Sum_probs=60.4
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCce-EEEEeCCceeeeeeeeeEee
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMK-VAWIKADTKAVLAIHEHVIT 85 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~ 85 (238)
.+|.|.. +..+.+.+|+++.|.|.+. +.|.|. +.|++++..+....
T Consensus 13 ~~P~i~~-~~~~~~~~G~~v~l~C~~~--------------------------g~P~p~~i~W~~~~~~l~~~~------ 59 (122)
T 2cry_A 13 GPPIISS-TQTQHALHGEKGQIKCFIR--------------------------STPPPDRIAWSWKENVLESGT------ 59 (122)
T ss_dssp SSCCEEE-ECCCCCCTTSCCCCCEEEC--------------------------CSSCCSEEEEESSSCEECSEE------
T ss_pred cCCCccC-CCeEEEecCCCEEEEEEEe--------------------------ecCCCcEeEEEECCEEccCCC------
Confidence 4677777 7888899999999999995 345665 99999876543211
Q ss_pred cCccEEEE--EcCC-CeEEEEEcccCcccC-eEEEEEEecCCC
Q psy7941 86 NNARLSVT--HNDA-NTWTLNIRSVRREDR-GYYMCQVNTNPM 124 (238)
Q Consensus 86 ~~~~~~~~--~~~~-~~~~L~i~~~~~~d~-G~Y~C~~~~~~~ 124 (238)
..++.+. .... ...+|.|.+++.+|. |.|+|.+.|...
T Consensus 60 -~~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G~Y~C~a~N~~G 101 (122)
T 2cry_A 60 -SGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFG 101 (122)
T ss_dssp -ETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSC
T ss_pred -CCCEEEEEecCCCceEEEEEEcCCChhhCCceEEEEEECCCC
Confidence 2344432 1111 144899999999999 999999988643
No 442
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}
Probab=99.17 E-value=7.1e-10 Score=72.53 Aligned_cols=100 Identities=13% Similarity=0.182 Sum_probs=64.2
Q ss_pred ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeeee-eEeecC
Q psy7941 13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIHE-HVITNN 87 (238)
Q Consensus 13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~-~~~~~~ 87 (238)
..+..+.+.+|++++|.|.+..... ...+.|++.... .+..... ......
T Consensus 7 ~~p~~v~~~~G~svtL~C~~s~~~~-------------------------~~~~~W~rq~~~~~~~~li~~~~~~~~~~~ 61 (124)
T 2nms_A 7 TGPTTVNGLERGSLTVQCVYRSGWE-------------------------TYLKWWCRGAIWRDCKILVKTSGSEQEVKR 61 (124)
T ss_dssp ECCSEEEEETTCCEEEEEEECTTCT-------------------------TSEEEEEESSSSTTCEEEEECCSSSCCEEE
T ss_pred ecccEEEEeCCCCEEEEeEEeCCcc-------------------------cccEEEEeCCCCCCceEEEEcCCcccceeC
Confidence 3467788999999999999864211 124899997531 1111110 011134
Q ss_pred ccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCC
Q psy7941 88 ARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPP 137 (238)
Q Consensus 88 ~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~ 137 (238)
+|+.+... ....++|+|.+++.+|+|.|+|.+..... ....+.|.|..+|
T Consensus 62 ~R~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~~~~~~~~v~L~V~~~~ 113 (124)
T 2nms_A 62 DRVSIKDNQKNRTFTVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTIDPAP 113 (124)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred CCEEEEEcCcCCEEEEEEeCCCHHHCEEEEEEEEcCCCCccEEEEEEEeCCC
Confidence 67877654 35788999999999999999999965432 2223445555443
No 443
>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A
Probab=99.16 E-value=3.4e-10 Score=73.89 Aligned_cols=88 Identities=17% Similarity=0.234 Sum_probs=59.6
Q ss_pred cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--e--eeeeee-eeE
Q psy7941 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--K--AVLAIH-EHV 83 (238)
Q Consensus 9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~--~~~~~~-~~~ 83 (238)
|.+.+ |..+.+.+|++++|.|.+....- ....+.||+... . .+.... ...
T Consensus 2 p~v~Q-p~~v~v~~G~~vtL~C~~s~~~~------------------------~~~~v~Wyrq~~g~~~~~li~~~~~~~ 56 (123)
T 3t0v_A 2 PVLTQ-SPSVSGTPGQKVTIFCSGSSSNV------------------------EDNSVYWYQQFPGTTPKVLIYNDDRRS 56 (123)
T ss_dssp CSBEE-CCCEEECTTCCEEEEEECCTTTT------------------------TTSCEEEEEECTTSCCEEEEETTTEEC
T ss_pred CccCc-cCeEEEcCCCCEEEEEecCCCcc------------------------CCCeEEEEEECCCCCCEEEEEECCcCC
Confidence 56666 56889999999999999864210 124599999532 1 111111 111
Q ss_pred eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
....+||.+.. ....++|.|.+++.+|+|.|+|.+.+.
T Consensus 57 ~~~~~Rfs~~~-~~~~~sL~I~~l~~~DsG~Y~C~~~~~ 94 (123)
T 3t0v_A 57 SGVPDRFSGSK-SGTSASLAISGLRSEDEADYYCLSWDD 94 (123)
T ss_dssp TTCCTTEEEEE-ETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred CCCcCCEEEEc-cCCEEEEEECCCCHHHCEEEEEEEEcC
Confidence 11246887765 456789999999999999999998654
No 444
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=5.4e-11 Score=75.08 Aligned_cols=81 Identities=22% Similarity=0.404 Sum_probs=59.4
Q ss_pred CceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEee--ceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941 146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVES--EVLSLTKVTRSEMGAYQCIAANGVPP 223 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~y~C~~~n~~g~ 223 (238)
..+.+.+|+.+.|.|.+. .|.+.+.|++ ++..+.... .......+ ..|.|.++..+|+|.|+|.+.|
T Consensus 19 ~~~~v~~G~~v~L~C~~~-~p~~~v~W~k-~g~~~~~~~-----~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~---- 87 (102)
T 2eo1_A 19 REVQAEAGASATLSCEVA-QAQTEVTWYK-DGKKLSSSS-----KVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGG---- 87 (102)
T ss_dssp EEEEEETTCCEEECCBCS-CSSSCCEEEE-TTEECCCCS-----SEEEEEETTEEEEEETTCCTTTCSCEEEEETT----
T ss_pred ccEEEeCCCcEEEEEEec-CCCCceEEEE-CCEECCCCC-----CEEEEEcCCEEEEEECCCCcccCEEEEEEcCC----
Confidence 345788999999999998 7889999999 554442211 11111122 4799999999999999999954
Q ss_pred CccceEEEEEEeecC
Q psy7941 224 TVSKRLMLHVHCTYL 238 (238)
Q Consensus 224 ~~~~~~~l~V~~~p~ 238 (238)
...++.|.|..||+
T Consensus 88 -~~~~~~l~V~~p~~ 101 (102)
T 2eo1_A 88 -QQLSFRLQVAGQCF 101 (102)
T ss_dssp -EECCEEEEEESCCC
T ss_pred -CcEEEEEEEeCCCC
Confidence 24568889998885
No 445
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*
Probab=99.16 E-value=4e-10 Score=72.86 Aligned_cols=86 Identities=14% Similarity=0.274 Sum_probs=59.4
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeee--eeEe
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIH--EHVI 84 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~--~~~~ 84 (238)
+...+..+.+.+|++++|.|.+.... +.+.+.|++.... .+.... ....
T Consensus 3 v~q~p~~~~~~~G~~vtL~C~~~~~~-------------------------~~~~v~W~rq~~~~~~~~l~~~~~~~~~~ 57 (116)
T 1fo0_A 3 VTQTQTSISVMEKTTVTMDCVYETQD-------------------------SSYFLFWYKQTASGEIVFLIRQDSYKKEN 57 (116)
T ss_dssp EECCCCEEEEETTCCEEECCEECCCC-------------------------SSCEEEEEEECTTCCEEEEEEEETTCCSC
T ss_pred cCcCCCcEEEecCCcEEEEeEecCCC-------------------------CCeEEEEEEeCCCCCeEEEEEEccCCcCc
Confidence 45667889999999999999986431 1335999996421 111111 0111
Q ss_pred ecCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941 85 TNNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNT 121 (238)
Q Consensus 85 ~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 121 (238)
...+||.+.. .....++|+|.+++.+|+|.|.|.+.+
T Consensus 58 ~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~ 95 (116)
T 1fo0_A 58 ATVGHYSLNFQKPKSSIGLIITATQIEDSAVYFCAMRG 95 (116)
T ss_dssp CEETTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred ccCCcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEc
Confidence 1246888763 445678999999999999999999975
No 446
>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A
Probab=99.16 E-value=1.3e-10 Score=74.52 Aligned_cols=90 Identities=17% Similarity=0.219 Sum_probs=59.4
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eeeeee-eEe
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLAIHE-HVI 84 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~~~~-~~~ 84 (238)
.+...|..+.+.+|++++|.|.+..... ....+.+.|+++.. .. +..... ...
T Consensus 3 ~v~q~p~~~~~~~G~~v~L~C~~~~~~~----------------------~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~ 60 (111)
T 1j05_L 3 VLTQSPASLAVSLGQRATMSCRAGESVD----------------------IFGVGFLHWYQQKPGQPPKLLIYRASNLES 60 (111)
T ss_dssp CEEEECSEEECCTTSCEEEEEEESSCCE----------------------ETTEECEEEEEECTTSCEEEEEETTTEECT
T ss_pred cEEEeCCEEEEeCCCCEEEEeecCCCcc----------------------cCCCceEEEEEeCCCCCCEEEEEecCcCCC
Confidence 3556778889999999999999864320 00124599999642 11 111100 001
Q ss_pred ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
...+|+.+.. ....++|.|.+++.+|+|.|+|.+.+.
T Consensus 61 ~~~~R~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 97 (111)
T 1j05_L 61 GIPVRFSGTG-SRTDFTLIIDPVEADDVATYYCQQTNE 97 (111)
T ss_dssp TSCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred CCCCcEEEEc-cCCEEEEEECCCCcccCEEEEEEEecC
Confidence 1246787764 346679999999999999999999653
No 447
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B
Probab=99.16 E-value=1.7e-10 Score=75.49 Aligned_cols=105 Identities=19% Similarity=0.384 Sum_probs=65.0
Q ss_pred cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce------ee-eeeee
Q psy7941 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK------AV-LAIHE 81 (238)
Q Consensus 9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~------~~-~~~~~ 81 (238)
..+..++..+.+.+|+++.|.|.+...... ...+.+.|++.+.. .. .....
T Consensus 6 ~~v~~~~~~v~~~~G~~v~L~C~~~~~~~~----------------------~~~~~v~W~~~~~~~~~~~~~i~~~~~~ 63 (126)
T 1eaj_A 6 LSITTPEEMIEKAKGETAYLPCKFTLSPED----------------------QGPLDIEWLISPADNQKVDQVIILYSGD 63 (126)
T ss_dssp CEESSSEEEEEEETTSCEEECCBEECCTTC----------------------CSCEEEEEEEEETTSSCCSEEEEEEETT
T ss_pred EEEECCCceEEEEeCCCEEEEEEEecCCCC----------------------CCceEEEEEEeCCCcCCCceEEEEEeCC
Confidence 345566778899999999999998643211 11245999996421 11 11111
Q ss_pred eEe-----ecCccEEEEEc--CCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEc
Q psy7941 82 HVI-----TNNARLSVTHN--DANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVI 135 (238)
Q Consensus 82 ~~~-----~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~ 135 (238)
... ...+|+.+... ....++|.|.+++.+|+|.|+|.+.+... ....+.|.|..
T Consensus 64 ~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~~ 125 (126)
T 1eaj_A 64 KIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 125 (126)
T ss_dssp EEECTTSSTTTTTEEECCSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred eeccccCccccCeeEEEcccccCCeEEEEECcCChHHCeEEEEEEEcCCccCCcEEEEEEEc
Confidence 111 12345655442 23456899999999999999999977533 23445566543
No 448
>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=2.8e-10 Score=75.81 Aligned_cols=106 Identities=18% Similarity=0.318 Sum_probs=65.2
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN 87 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 87 (238)
...+..++..+.+.+|++++|.|.+.... +.+.+.||++.+..........-...
T Consensus 8 ~~~v~q~p~~~~v~~G~~v~L~C~~~~~~-------------------------~~~~v~W~r~~~~~~~~i~~~~~~~~ 62 (136)
T 2d9c_A 8 ELQVIQPEKSVSVAAGESATLRCAMTSLI-------------------------PVGPIMWFRGAGAGRELIYNQKEGHF 62 (136)
T ss_dssp CCCEECCCSEEEEETTSCEEECCEESCCC-------------------------SCCCCEEEETTTSSCEEEEESSSCCC
T ss_pred CeEEEecCcEEEEcCCCCEEEEEEEcCCC-------------------------CCceEEEEeecCCCeEEEEEcCCCcc
Confidence 34566778899999999999999986421 23469999976321110000000001
Q ss_pred ccEEEEE----cCCCeEEEEEcccCcccCeEEEEEEecCCC---cc----eeeEEEEEcCCc
Q psy7941 88 ARLSVTH----NDANTWTLNIRSVRREDRGYYMCQVNTNPM---TK----QMAFLEVVIPPD 138 (238)
Q Consensus 88 ~~~~~~~----~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~---~~----~~~~l~v~~~~~ 138 (238)
.|+.... .....++|.|.+++.+|+|.|+|.+.+... .. ..+.|.|..+|.
T Consensus 63 ~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~g~~t~L~V~~~~s 124 (136)
T 2d9c_A 63 PRVTTVSELTKRNNLDFSISISNITPADAGTYYCVKFRKGSPDDVEFKSGAGTELSVRAKPS 124 (136)
T ss_dssp SSBCCSSCSSSSSCCBCCEEESSCCTTTCEEEEEEEEECCSSSCEEEEECCCEEEEEECCCC
T ss_pred cceeeeeeeccCCCCEEEEEECCCCHHHCEEEEEEEEeCCCCcccceeeCCCeEEEEEeCCC
Confidence 2333211 112356999999999999999999865432 11 345677776553
No 449
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.16 E-value=1.3e-10 Score=83.15 Aligned_cols=78 Identities=18% Similarity=0.354 Sum_probs=57.1
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCC-CCceEEEEeCCceeeeeeeeeEeec
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS-SAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
+|.|...+ ...+.+|+++.|.|.+.+ . |.|.++|+|++..+..
T Consensus 117 ~P~~~~~~-~~~v~~g~~v~l~C~v~g--------------------------~~P~p~i~W~k~g~~l~~--------- 160 (207)
T 3rbs_A 117 GPHFVEYL-SWEVTGECNVLLKCKVAN--------------------------IKKETHIVWYKDEREISV--------- 160 (207)
T ss_dssp SSEEEEEE-EEEEETTTEEEEEEEEES--------------------------CCTTCEEEEEETTEEECC---------
T ss_pred CCceEecC-CcEEcCCCcEEEEEEEeC--------------------------CCCCCEEEEEECCEECCC---------
Confidence 57776655 478899999999999853 3 5778999998776532
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 124 (238)
+.++. ...+..+|.|.+++.+|+|.|+|.+.|..+
T Consensus 161 ~~~~~---~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 195 (207)
T 3rbs_A 161 DEKHD---FKDGICTLLITEFSKKDAGIYEVILKDDRG 195 (207)
T ss_dssp CCCCC---CSSEEEEEEETTCCGGGCEEEEEEEEETTE
T ss_pred CCceE---cCCCEEEEEECCCCcccCEEEEEEEEcCCC
Confidence 11211 112234799999999999999999987643
No 450
>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...
Probab=99.16 E-value=1.8e-10 Score=74.27 Aligned_cols=92 Identities=18% Similarity=0.279 Sum_probs=59.9
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e---eeeeeee-eEe
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K---AVLAIHE-HVI 84 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~---~~~~~~~-~~~ 84 (238)
.+...|..+.+.+|++++|.|.+...... .....+.+.||+... . .+..... ...
T Consensus 3 ~v~q~p~~v~v~~G~~v~L~C~~~~~~~~--------------------~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~ 62 (114)
T 1eeq_A 3 VLTQSPDSLAVSLGERATINCKSSQSVLD--------------------SSNSKNYLAWYQQKPGQPPKLLIYWASTRES 62 (114)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCEE--------------------TTTTEECEEEEEECTTSCCEEEEETTTEECT
T ss_pred ceEecCCeEEEcCCCeEEEEEEcCCCccc--------------------cccCCccEEEEEECCCCCCEEEEEecCccCC
Confidence 45567888999999999999998643210 000024599999642 1 1111100 001
Q ss_pred ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
...+|+.+.. ....++|.|.+++.+|+|.|.|.+.+.
T Consensus 63 ~~~~r~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 99 (114)
T 1eeq_A 63 GVPDRFSGSG-SGTDFTLTISSLQAEDVAVYYCQQYYS 99 (114)
T ss_dssp TCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred CCCCCEEEee-cCCEEEEEECCCCcccCEEEEEEEeeC
Confidence 1246787764 456779999999999999999999653
No 451
>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2e7l_C
Probab=99.16 E-value=9.1e-10 Score=71.68 Aligned_cols=86 Identities=13% Similarity=0.229 Sum_probs=59.7
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeeeee---
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIHEH--- 82 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~~--- 82 (238)
.+...|..+.+.+|++++|.|.... . ...+.||+.... .+......
T Consensus 3 ~v~q~p~~v~v~~G~~vtL~C~~~~-~--------------------------~~~v~W~rq~~g~~~~~l~~~~~~~~~ 55 (121)
T 2oi9_C 3 AVTQSPRNKVAVTGEKVTLSCNQTN-N--------------------------HNNMYWYRQDTGHELRLIYYSYGAGST 55 (121)
T ss_dssp SEEEECSEEEEETTCCEEEEEEESS-C--------------------------CSEEEEEEESSSSCCEEEEEESSTTCC
T ss_pred ceEeCCCeEEecCCCcEEEEEEecC-C--------------------------CCeEEEEEECCCCCcEEEEEECCCcee
Confidence 4567788899999999999999631 1 235999986421 11111100
Q ss_pred -EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 83 -VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 83 -~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
.....+||.+.......++|.|.+++.+|+|.|.|.+.+.
T Consensus 56 ~~~~~~~R~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~ 96 (121)
T 2oi9_C 56 EKGDIPDGYKASRPSQENFSLTLESATPSQTSVYFCASGGG 96 (121)
T ss_dssp EECSSCTTEEEECCSSSEEEEEESSCCGGGCEEEEEEEESS
T ss_pred eCCccCCCeEEEcCCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence 0112568887764456789999999999999999998653
No 452
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Probab=99.15 E-value=4.7e-10 Score=72.52 Aligned_cols=86 Identities=22% Similarity=0.369 Sum_probs=59.3
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--e--eeeeee-eeEe-
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--K--AVLAIH-EHVI- 84 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~--~~~~~~-~~~~- 84 (238)
+...+..+.+.+|++++|.|.+.... +.+.+.|++... . .+.... ....
T Consensus 3 v~q~p~~~~~~~G~~vtL~C~~~~~~-------------------------~~~~v~W~r~~~~~~~~~l~~~~~~~~~~ 57 (116)
T 1tvd_A 3 VTQSSPDQTVASGSEVVLLCTYDTVY-------------------------SNPDLFWYRIRPDYSFQFVFYGDDSRSEG 57 (116)
T ss_dssp EECCSCCEEEETTCCEEECCEEECCS-------------------------SSCCEEEEEECTTSCEEEEEEECSSCEEE
T ss_pred eecCCCcEEEecCCeEEEEeEeEcCC-------------------------CCcEEEEEEeCCCCCcEEEEEECCccccc
Confidence 45678889999999999999986321 134599998642 1 111111 1111
Q ss_pred --ecCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEec
Q psy7941 85 --TNNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNT 121 (238)
Q Consensus 85 --~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~ 121 (238)
...+|+.+... ....++|+|.+++.+|+|.|.|.+.+
T Consensus 58 ~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~ 97 (116)
T 1tvd_A 58 ADFTQGRFSVKHILTQKAFHLVISPVRTEDSATYYCAFTL 97 (116)
T ss_dssp CGGGTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEEC
T ss_pred CcccCCCEEEEEecCCCEEEEEEccCChHHCEEEEEEEeC
Confidence 12578887653 34677999999999999999999975
No 453
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}
Probab=99.15 E-value=4.1e-10 Score=77.03 Aligned_cols=89 Identities=18% Similarity=0.408 Sum_probs=62.9
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-----e--eeeeee
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-----K--AVLAIH 80 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-----~--~~~~~~ 80 (238)
.+.+...+..+.+.+|+++.|.|.+.+... ..+.||+... . .+....
T Consensus 9 s~~v~Q~P~~v~v~~G~sVtL~C~~s~~~~--------------------------~~v~WyrQ~pg~~~~~p~~Li~~~ 62 (166)
T 3dmm_C 9 APELRIFPKKMDAELGQKVDLVCEVLGSVS--------------------------QGCSWLFQNSSSKLPQPTFVVYMA 62 (166)
T ss_dssp CCEEEEECSCBCCCTTCCEEEEEEEESSSC--------------------------CEEEEEEEETTCSCCSCEEEEEEE
T ss_pred CccEEEeCCeEEEcCCCCEEEEEEEeCCCC--------------------------ceEEEEEECCCCCCCCcEEEEEEe
Confidence 456777888899999999999999963222 2489998532 1 111111
Q ss_pred ee---E---ee--cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 81 EH---V---IT--NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 81 ~~---~---~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
.. . .. ..+||.+.......++|.|.+++.+|+|.|+|.+...
T Consensus 63 ~~~~~~~y~~~~~~~~Rfs~s~~~~~~~sL~I~~vq~eDsG~YyCa~~~~ 112 (166)
T 3dmm_C 63 SSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISN 112 (166)
T ss_dssp SSSCCEEECGGGSSCCSEEEECSTTTEEEEEESSCCTTTCEEEEEEEESS
T ss_pred CCCCceeeccccccccceEEEcCCCCEEEEEECCCChhhCEEEEEEECCC
Confidence 10 0 01 2578888876656689999999999999999998643
No 454
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Probab=99.15 E-value=3e-10 Score=73.08 Aligned_cols=84 Identities=21% Similarity=0.370 Sum_probs=58.7
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccE
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARL 90 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 90 (238)
+...|..+.+.+|++++|.|.+.... .+.+.+.|+++...... ...+..++|+
T Consensus 3 v~q~p~~~~v~~G~~v~L~C~~~~~~------------------------~~~~~v~W~r~~~g~~~---~~~~~~~~r~ 55 (113)
T 1sq2_N 3 VDQTPRSVTKETGESLTINCVLRDAS------------------------YALGSTCWYRKKSGEGN---EESISKGGRY 55 (113)
T ss_dssp EEEECSEEEECTTCCEEEEEEECSCS------------------------SCCCCEEEEEEETTSCC---CEECCCBTTE
T ss_pred eEeCCccEEEecCCCEEEEEEECCCc------------------------CCCCEEEEEEeCCCCCc---eEeEEeCCCE
Confidence 45678889999999999999996421 01346999996421110 0112234677
Q ss_pred EEEEc-CCCeEEEEEcccCcccCeEEEEEEec
Q psy7941 91 SVTHN-DANTWTLNIRSVRREDRGYYMCQVNT 121 (238)
Q Consensus 91 ~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~ 121 (238)
..... ....++|+|.+++.+|+|.|.|.+.+
T Consensus 56 ~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~ 87 (113)
T 1sq2_N 56 VETVNSGSKSFSLRINDLTVEDGGTYRCGLGV 87 (113)
T ss_dssp EEEEETTTTEEEEEECSCCGGGCEEEEEEECB
T ss_pred EEEEeCCCCEEEEEECCCChhhCEEEEEEEEe
Confidence 66542 34678999999999999999999965
No 455
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.15 E-value=3e-10 Score=79.89 Aligned_cols=88 Identities=14% Similarity=0.320 Sum_probs=65.2
Q ss_pred CCceeecCCCcEEEEEEEcccc-CCeEEEEeCCCeeeEeecCCCCCcceEE----EeeceEEEEEeecCCCeEEEEEeee
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYP-TPKITWRREDNKEIIVRSNPPSSQKVFS----VESEVLSLTKVTRSEMGAYQCIAAN 219 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~n 219 (238)
+....+.+|+.+.|.|.+.+.| .+.+.|++.++..+.... ..... .....|.|.++..+|+|.|+|.+.|
T Consensus 9 p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~-----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (191)
T 1epf_A 9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQ-----QRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTA 83 (191)
T ss_dssp SSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBS-----SSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred CCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCC-----CeEEEEECCCCceEEEEccCCcccCEEEEEEEEc
Confidence 3456788999999999999876 789999994554443211 11111 2345899999999999999999999
Q ss_pred CCCCCccceEEEEEEeec
Q psy7941 220 GVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 220 ~~g~~~~~~~~l~V~~~p 237 (238)
..|...+..+.|.|..+|
T Consensus 84 ~~~~~~~~~~~l~v~~~p 101 (191)
T 1epf_A 84 EDGTQSEATVNVKIFQKL 101 (191)
T ss_dssp TTTEEEEEEEEEEEECCS
T ss_pred CCCcceEEEEEEEeecCc
Confidence 985455778888887655
No 456
>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A
Probab=99.15 E-value=3.8e-10 Score=72.36 Aligned_cols=84 Identities=21% Similarity=0.394 Sum_probs=57.6
Q ss_pred eccCceeEEEecCCEEEEeEEe-cCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeee---eee-
Q psy7941 12 LYPLENVTIAQGRDAIFTCVVN-NLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAI---HEH- 82 (238)
Q Consensus 12 ~~~~~~~~v~~g~~~~l~C~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~---~~~- 82 (238)
+..+..+.+.+|++++|.|.+. ... .+.+.|++.... .+... ...
T Consensus 3 ~q~p~~~~~~~G~~v~L~C~~~~~~~--------------------------~~~v~W~rq~~~~~~~~l~~~~~~~~~~ 56 (111)
T 2qhl_A 3 IKELHVKTVKRGENVTMECSMSKVKD--------------------------KDKLAWYRQSFGKVPQYFVRYYSSNSGY 56 (111)
T ss_dssp CCBCEEEECCTTCCEEECCBCTTCSC--------------------------GGGEEEEEECTTBCCEEEEEECSSSSCE
T ss_pred cCCCceEEEeCCCCEEEEEEccCCcc--------------------------cceEEEEEecCCCCCEEEEEEeccCCcc
Confidence 3457778899999999999985 321 345999996421 11111 001
Q ss_pred Ee--ec-CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 83 VI--TN-NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 83 ~~--~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
.. .. .+||.+.. ....++|+|.+++.+|+|.|.|.+.+.
T Consensus 57 ~~~~~~~~~R~~~~~-~~~~~~L~I~~~~~~DsG~Y~C~~~~~ 98 (111)
T 2qhl_A 57 KFAEGFKDSRFSMTV-NDQKFDLNIIGTREDDGGEYFCGEVEG 98 (111)
T ss_dssp EECTTCCCTTEEEEE-SSSBEEEEESSCCGGGCEEEEEEEEET
T ss_pred ccccCCCCCcEEEEE-cCCeEEEEECCCChhHCEEEEEEEccC
Confidence 01 01 56888765 356789999999999999999999653
No 457
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}
Probab=99.15 E-value=3.2e-10 Score=72.34 Aligned_cols=85 Identities=24% Similarity=0.363 Sum_probs=58.8
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCcc
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNAR 89 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~ 89 (238)
.+...|..+.+.+|++++|.|.+..... +.+.+.||++...... ...+...+|
T Consensus 2 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~~~~~---~~~~~~~~r 54 (108)
T 2coq_A 2 RVDQTPRIATKETGESLTINCVLRDTAC------------------------ALDSTNWYRTKLGSTK---EQTISIGGR 54 (108)
T ss_dssp CEEEECSEEEECTTCCEEEEEEECCSSE------------------------EEEEEEEEEEETTCCC---EEECCCBTT
T ss_pred ceEeCCceEEEcCCCCEEEEeEeCCCcC------------------------CCCEEEEEEcCCCCCc---EEEEEeCCc
Confidence 3556788899999999999999864210 1346999996421110 011223567
Q ss_pred EEEEE-cCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941 90 LSVTH-NDANTWTLNIRSVRREDRGYYMCQVNT 121 (238)
Q Consensus 90 ~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 121 (238)
+.... .....++|.|.+++.+|+|.|.|.+.+
T Consensus 55 ~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~ 87 (108)
T 2coq_A 55 YSETVDEGSNSASLTIRDLRVEDSGTYKCKAYR 87 (108)
T ss_dssp EEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred eEEEEcCCCCEEEEEECCCCcccCEEEEEEEEe
Confidence 76543 234678999999999999999999865
No 458
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.15 E-value=7.6e-10 Score=79.43 Aligned_cols=102 Identities=19% Similarity=0.318 Sum_probs=61.6
Q ss_pred cccee-ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-eeEee
Q psy7941 8 EPDFL-YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-EHVIT 85 (238)
Q Consensus 8 ~p~~~-~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~ 85 (238)
.|.+. .++..+.+.+|+++.|.|.+.... .+.+.+.|++++..+..... .....
T Consensus 104 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p------------------------~~~~~i~W~~~g~~~~~~~~~~~~~~ 159 (213)
T 2x1w_L 104 IYDVVLSPSHGIELSVGEKLVLNCTARTEL------------------------NVGIDFNWEYPSSKHQHKKLVNRDLK 159 (213)
T ss_dssp EEEEEEESCSCEEEETTCCEEEEEEEEECT------------------------TBCCEEEEECSCSSCCSEEEEEEEEC
T ss_pred ccceEEcCCCCeEEcCCCCEEEEEEEECCC------------------------CCceEEEEEecCCccceEEEeccccc
Confidence 34444 344455899999999999997421 12346999998765322111 00000
Q ss_pred cCc--c-EEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCcc
Q psy7941 86 NNA--R-LSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDI 139 (238)
Q Consensus 86 ~~~--~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~ 139 (238)
... . ... ..+|.|.+++.+|+|.|+|.+.|.. .....+.|.|..+|.+
T Consensus 160 ~~~~~~~~~~------~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i 211 (213)
T 2x1w_L 160 TQSGSEMKKF------LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPIE 211 (213)
T ss_dssp CCSSCSCEEE------EEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC----
T ss_pred cccCccceee------eEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEeccccc
Confidence 000 0 111 2289999999999999999998863 3455667777766543
No 459
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A
Probab=99.15 E-value=2.5e-10 Score=73.89 Aligned_cols=91 Identities=23% Similarity=0.420 Sum_probs=61.7
Q ss_pred CceeecCCCcEEEEEEEcc--ccCCeEEEEeCCCeeeEeecC-------CCCCcceEEEeeceEEEEEeecCCCeEEEEE
Q psy7941 146 GDMMVPEGGSAKLVCKAKG--YPTPKITWRREDNKEIIVRSN-------PPSSQKVFSVESEVLSLTKVTRSEMGAYQCI 216 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~~~--~p~~~~~W~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 216 (238)
..+.+..|+++.|.|.+.+ .+...+.|++++ ..+..... .....+.....+..|.|.+++.+|.|.|+|.
T Consensus 11 ~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~k~~-~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~ 89 (117)
T 3q0h_A 11 GNISAEKGGSIILQCHLSSTTAQVTQVNWEQQD-QLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVNDTGEYFCI 89 (117)
T ss_dssp CCEEEETTCCEEECEEEESCCCEEEEEEEEETT-EEEEEEETTTEEECCGGGTTTEEECSTTCEEECSCCGGGCEEEEEE
T ss_pred CCEEEecCCCEEEEEEecCCCCCEEEEEEEeCC-EEEEEEECCCCceeCccccCcEEeCCceEEEEeeCChhhCEEEEEE
Confidence 4467889999999999876 334479999953 32221100 0111223233356899999999999999999
Q ss_pred eee-CCCCCccceEEEEEEeecC
Q psy7941 217 AAN-GVPPTVSKRLMLHVHCTYL 238 (238)
Q Consensus 217 ~~n-~~g~~~~~~~~l~V~~~p~ 238 (238)
+.+ ..| .....+.|.|..||.
T Consensus 90 v~~~~~g-~~~~~~~L~V~~pp~ 111 (117)
T 3q0h_A 90 YHTYPDG-TYTGRIFLEVLESSV 111 (117)
T ss_dssp EEEETTC-CEEEEEEEEEECC--
T ss_pred EEECCCC-CeEEEEEEEEEccCc
Confidence 765 556 457888999998873
No 460
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*
Probab=99.14 E-value=2.9e-10 Score=72.54 Aligned_cols=97 Identities=19% Similarity=0.345 Sum_probs=60.3
Q ss_pred ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce------eeeeeee--eEeecC
Q psy7941 16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK------AVLAIHE--HVITNN 87 (238)
Q Consensus 16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~------~~~~~~~--~~~~~~ 87 (238)
+.+.+.+|+++.|.|.+...... ....+.|++.... ....... ......
T Consensus 2 ~~v~~~~G~~v~L~C~~~~~~~~-----------------------~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~ 58 (109)
T 2oyp_A 2 DGYKVEVGKNAYLPCSYTLPTSG-----------------------TLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKS 58 (109)
T ss_dssp EEEEECTTSCEEECCBCCCCTTC-----------------------CCCCEEEESSSCCSSSCSSEEEEECSSSEEEESC
T ss_pred CCEEEEcCCCEEEEEEeECCCCC-----------------------CeEEEEEEecCCCCCCceeEEEEcCCcCcccccc
Confidence 45778999999999998642111 1235899996532 1111111 111234
Q ss_pred ccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEc
Q psy7941 88 ARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVI 135 (238)
Q Consensus 88 ~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~ 135 (238)
+|+.+... ..+.++|.|.+++.+|+|.|+|.+.+.. .....+.|.|.+
T Consensus 59 ~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~l~V~V 108 (109)
T 2oyp_A 59 SRYQLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDI 108 (109)
T ss_dssp TTEEECSCGGGTBCCEEECSCCGGGCEEEEEEECCSSTTCCEEEEEEEEE
T ss_pred ceEEEccCccCCcEeEEEccCCChhCeEEEEEEEcCCcccceEEEEEEEe
Confidence 56655432 2345689999999999999999997653 334455566543
No 461
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}
Probab=99.14 E-value=7.4e-09 Score=87.74 Aligned_cols=168 Identities=17% Similarity=0.206 Sum_probs=105.5
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEE-EE--eCCceeeeeeeeeE
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVA-WI--KADTKAVLAIHEHV 83 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-W~--~~~~~~~~~~~~~~ 83 (238)
.+|.|. .+..+.+..|+++.|.|.+. +.|.+.+. |+ +++..+.. .....
T Consensus 164 ~~p~~~-~~~~~~v~~G~~v~l~C~~~--------------------------g~P~p~i~~W~~~~~g~~l~~-~~~~~ 215 (731)
T 2v5y_A 164 RTPHFL-RIQNVEVNAGQFATFQCSAI--------------------------GRTVAGDRLWLQGIDVRDAPL-KEIKV 215 (731)
T ss_dssp SSCEEC-CCCCEEEETTSCEEEEEEEE--------------------------SCCCTTCEEEEEESSSCCEEE-EEEEE
T ss_pred cccccc-cccceEEeCCCcEEEEEEeC--------------------------CCCCCceeEEEecCCCccccc-cceEE
Confidence 456766 56678999999999999995 34566687 88 44443321 11111
Q ss_pred eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEE
Q psy7941 84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCK 161 (238)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~ 161 (238)
+. ..+ ...+|.|.+++..|.|.|+|.+.|... ....+.|.|..+|.+... ..........+.|.|.
T Consensus 216 ~~-~~~--------~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~~---p~~~~~~~~~v~l~w~ 283 (731)
T 2v5y_A 216 TS-SRR--------FIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAP---PQLASVGATYLWIQLN 283 (731)
T ss_dssp CC-SSE--------EEEEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCCCBSSC---CEEEEECSSCEEEECC
T ss_pred ec-ccc--------ceEEEEEcccccccCeEEEEEEECCCCCcceeeEEEEEecCCCCCCC---cceeccCCceEEEEeC
Confidence 11 111 123999999999999999999988644 345567888877765432 1222334567888887
Q ss_pred Eccc----cCC--eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEee--eCCCCC
Q psy7941 162 AKGY----PTP--KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAA--NGVPPT 224 (238)
Q Consensus 162 ~~~~----p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~--n~~g~~ 224 (238)
.... |.. .+.|...++... .........+.+..+...+...|+|.|. |..|..
T Consensus 284 ~~~~~g~~~i~~Y~v~~~~~~~~~~----------~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s 344 (731)
T 2v5y_A 284 ANSINGDGPIVAREVEYCTASGSWN----------DRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTG 344 (731)
T ss_dssp CSSBSSCSCCCEEEEEEEESSSSCE----------EEEECCSSEEEECSCCTTCEEEEEEEEECSSTTCSC
T ss_pred CcccCCCCccEEEEEEEEECCCCce----------EEeccCcceEEEeCCCCCCEEEEEEEEEecCCCccc
Confidence 5321 222 466665322111 1112233567888888888788888998 988854
No 462
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.14 E-value=1e-09 Score=77.15 Aligned_cols=94 Identities=21% Similarity=0.302 Sum_probs=65.5
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeC--CceeeeeeeeeEee
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKA--DTKAVLAIHEHVIT 85 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~--~~~~~~~~~~~~~~ 85 (238)
+|.+...+....+.+|+++.|.|.+. +.|.+.+.|+++ +..+.. ..
T Consensus 92 ~p~~~~~~~~~~~~~g~~v~l~C~~~--------------------------g~p~p~i~W~~~~~g~~~~~------~~ 139 (190)
T 2wv3_A 92 APDITGHKRSENKNEGQDAMMYCKSV--------------------------GYPHPEWMWRKKENGVFEEI------SN 139 (190)
T ss_dssp CCEEEEECSEEEEETTSCEEEEEEEE--------------------------CSSCCEEEEEEEETTEEEEC------CC
T ss_pred CCcccccCCcceeeCCCcEEEEEEeC--------------------------ccCCCceEEEEcCCCceeee------ec
Confidence 57777778888899999999999985 345678999994 332211 11
Q ss_pred cCccEEEEEcCCCeEEEEEcccC-cccCeEEEEEEecCCC-cceeeEEEEE
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVR-REDRGYYMCQVNTNPM-TKQMAFLEVV 134 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~~~~-~~~~~~l~v~ 134 (238)
...++.+... ....+|.|.+++ .+|.|.|+|.+.|... ....+.|.|.
T Consensus 140 ~~~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 189 (190)
T 2wv3_A 140 SSGRFFIINK-ENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189 (190)
T ss_dssp TTSCEEEEEC-SSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred CCCeEEEecC-CCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence 3445555442 233489999999 7999999999987643 3444555554
No 463
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.14 E-value=9.4e-11 Score=83.59 Aligned_cols=89 Identities=21% Similarity=0.158 Sum_probs=61.5
Q ss_pred eeecCCCcEEEEEE---EccccCCeEEEEeCCCeeeE---eecC-------CCCCcce---EEEeeceEEEEEeecCCCe
Q psy7941 148 MMVPEGGSAKLVCK---AKGYPTPKITWRREDNKEII---VRSN-------PPSSQKV---FSVESEVLSLTKVTRSEMG 211 (238)
Q Consensus 148 ~~~~~g~~~~l~C~---~~~~p~~~~~W~~~~~~~~~---~~~~-------~~~~~~~---~~~~~~~l~i~~~~~~d~G 211 (238)
+.+..|+.+.|.|. +.+.|.+.+.|++++..... .... ....... .......|.|.++..+|+|
T Consensus 3 Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G 82 (203)
T 4fa8_A 3 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG 82 (203)
T ss_dssp CEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred eEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHCe
Confidence 56788999999996 45689999999995432110 0000 0000011 1122347999999999999
Q ss_pred EEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 212 AYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 212 ~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
.|+|.|.|..|. .+..+.|.|..||
T Consensus 83 ~Y~C~a~n~~g~-~~~~~~l~V~~p~ 107 (203)
T 4fa8_A 83 NYLCRMKLGETE-VTKQEHLSVVKPL 107 (203)
T ss_dssp EEEEEEEETTEE-EEEEEEEEEEEEE
T ss_pred EEEEEEEcCCCc-EEEEEEEEecCCc
Confidence 999999999984 4788889998776
No 464
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.14 E-value=3e-10 Score=81.40 Aligned_cols=88 Identities=30% Similarity=0.523 Sum_probs=64.7
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEee--ceEEEEEeec-CCCeEEEEEeeeCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVES--EVLSLTKVTR-SEMGAYQCIAANGV 221 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~-~d~G~y~C~~~n~~ 221 (238)
+....+.+|+.+.|.|.+.|.|.+.+.|++ ++..+.... .........+ ..|.|.++.. +|.|.|+|.+.|..
T Consensus 13 p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~-~~~~~~~~~---~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~ 88 (212)
T 2yd1_A 13 PQNQGVRVGGVASFYCAARGDPPPSIVWRK-NGKKVSGTQ---SRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGV 88 (212)
T ss_dssp CCCEEEETTSCEEEEEEEECSSCCEEEEEE-TTEECCTTS---TTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECSS
T ss_pred CCceEEecCCEEEEEEEEccCCCCeEEEEE-CCEECCCCc---ceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeCC
Confidence 445678899999999999999999999999 554442110 0011111111 4799999999 99999999999999
Q ss_pred CCCccceEEEEEEee
Q psy7941 222 PPTVSKRLMLHVHCT 236 (238)
Q Consensus 222 g~~~~~~~~l~V~~~ 236 (238)
|...+..+.|.|..+
T Consensus 89 g~~~~~~~~l~V~~~ 103 (212)
T 2yd1_A 89 GDAVSADATLTIYEG 103 (212)
T ss_dssp SCEEEEEEEEEEECT
T ss_pred CCeEEeeEEEEEecc
Confidence 854578888888754
No 465
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.14 E-value=8.9e-11 Score=83.50 Aligned_cols=89 Identities=16% Similarity=0.283 Sum_probs=60.2
Q ss_pred ceeecCCCcEEEEEEEccccC-----CeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941 147 DMMVPEGGSAKLVCKAKGYPT-----PKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221 (238)
Q Consensus 147 ~~~~~~g~~~~l~C~~~~~p~-----~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~ 221 (238)
.+.+.+|+.+.|.|.+.+.|. +.+.|++.++......................|.|.++..+|+|.|+|.+.|..
T Consensus 11 ~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~ 90 (202)
T 3bp6_B 11 VYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGA 90 (202)
T ss_dssp EEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred CEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEeCC
Confidence 466889999999999998876 799999943332211110000000000123579999999999999999999998
Q ss_pred CCCccceEEEEEEee
Q psy7941 222 PPTVSKRLMLHVHCT 236 (238)
Q Consensus 222 g~~~~~~~~l~V~~~ 236 (238)
|.. +..+.|.|..+
T Consensus 91 ~~~-~~~~~l~V~~~ 104 (202)
T 3bp6_B 91 AWD-YKYLTVKVKAS 104 (202)
T ss_dssp EEE-EEEEEEEEEBC
T ss_pred Ccc-eEEEEEEecCC
Confidence 844 77888888764
No 466
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}
Probab=99.14 E-value=1.8e-10 Score=74.41 Aligned_cols=97 Identities=15% Similarity=0.253 Sum_probs=59.5
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc------eeeeeeee--eEee
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT------KAVLAIHE--HVIT 85 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~------~~~~~~~~--~~~~ 85 (238)
.+..+.+.+|++++|.|.+..... ....+.|++... ........ ....
T Consensus 3 sp~~v~~~~G~~v~L~C~~~~~~~------------------------~~~~v~W~~~~~~~~~~~~~~i~~~~~~~~~~ 58 (115)
T 2or7_A 3 SHTAVQGLAGHPVTLPCIYSTHLG------------------------GIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQ 58 (115)
T ss_dssp ---CEEEETTSCEEECCBCCHHHH------------------------CSCCEEEEESCHHHHTTTTEEEEECSSSEEEE
T ss_pred CccEEEEEcCCCEEEEEEeecCCC------------------------CCEEEEEECCCCCcCCCceEEEEeCCeEcccc
Confidence 466788999999999999863200 023599999751 22221111 1122
Q ss_pred cCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEc
Q psy7941 86 NNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVI 135 (238)
Q Consensus 86 ~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~ 135 (238)
..+|+.+... ..+.++|+|.+++.+|+|.|+|.+....... .+.+.+.+
T Consensus 59 ~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~-~~~v~L~V 108 (115)
T 2or7_A 59 RNSRYQLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFH-FVDYMLEV 108 (115)
T ss_dssp SSTTEECCSCGGGTBCCEEESSCCGGGCEEEEEEECCTTSCE-EEEEEEEE
T ss_pred cCccEEEecCccCCeEEEEEccCCHHHCEEEEEEEECCCcee-EEEEEEEE
Confidence 4567765432 2356799999999999999999997643322 44444443
No 467
>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C
Probab=99.14 E-value=3.5e-10 Score=72.79 Aligned_cols=91 Identities=19% Similarity=0.283 Sum_probs=59.8
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeee-eeEe
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIH-EHVI 84 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~-~~~~ 84 (238)
.+...|..+.+.+|++++|.|.+...... ....+.+.||+.... .+.... ....
T Consensus 3 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~---------------------~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~ 61 (113)
T 1dlf_L 3 VMTQTPLSLPVSLGNQASISCRSSQSLVH---------------------SNGNTYLHWYLQKPGQSPKLLIYKVSNRFS 61 (113)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCBC---------------------TTSCBCEEEEEECTTSCCEEEEETTTEECT
T ss_pred cEEEeCCEEEEcCCCCEEEEEEccccccc---------------------cCCCceEEEEEECCCCCCeEEEEecCccCC
Confidence 45567788999999999999998643210 001246999986421 111110 0001
Q ss_pred ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
...+||.... ....++|.|.+++.+|+|.|.|.+.+.
T Consensus 62 ~~~~R~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 98 (113)
T 1dlf_L 62 GVPDRFSGSG-SGTDFTLKISRVEAEDLGVYFCSQSTH 98 (113)
T ss_dssp TCCTTEEEEE-ETTEEEEEECSCCGGGCEEEEEEECSS
T ss_pred CCCCCEEEEc-cCCEEEEEECCCChHHCEEEEEEEecC
Confidence 1246787765 346779999999999999999999653
No 468
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.14 E-value=1.2e-10 Score=81.65 Aligned_cols=88 Identities=17% Similarity=0.392 Sum_probs=62.2
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC-
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP- 223 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~- 223 (238)
+....+.+|+.+.|.|.+.+.|.+.+.|++++ ..+... .........++.|.|.++..+|.|.|+|.+.|..+.
T Consensus 9 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~-~~~~~~----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 83 (189)
T 2v5t_A 9 VSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHN-EEVTTI----SDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGE 83 (189)
T ss_dssp CSSEEEETTSCEEECCEEECSSCCEEEEEC------CBC----CCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTTTE
T ss_pred CCCEEEeCCCcEEEEEEEcCCCCCEEEEEECC-ccceec----cCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcCCCc
Confidence 44567889999999999999999999999944 333211 112223334567999999999999999999998752
Q ss_pred CccceEEEEEEeec
Q psy7941 224 TVSKRLMLHVHCTY 237 (238)
Q Consensus 224 ~~~~~~~l~V~~~p 237 (238)
.....+.+.|..+|
T Consensus 84 ~~~~~~~l~v~~~p 97 (189)
T 2v5t_A 84 IDFRDIIVIVNVPP 97 (189)
T ss_dssp EEEEEEEEEEEEEE
T ss_pred eEEEEEEEEecCCC
Confidence 33456677777665
No 469
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Probab=99.13 E-value=4.3e-10 Score=74.46 Aligned_cols=93 Identities=22% Similarity=0.328 Sum_probs=58.4
Q ss_pred eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceee----eeeeee----E
Q psy7941 12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAV----LAIHEH----V 83 (238)
Q Consensus 12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~----~~~~~~----~ 83 (238)
...+..+.+.+|+++.|.|.+....... .+...+.+.|++...... ...... .
T Consensus 10 ~q~p~~v~~~~G~~v~L~C~~~~~~~~~-------------------~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~ 70 (132)
T 1nko_A 10 LTMQSSVTVQEGMCVHVRCSFSYPVDSD-------------------TDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQ 70 (132)
T ss_dssp EEECSEEEEETTCCEEECEEEECCCCTT-------------------TTTSCCEEEEEEC-----CCSCSEESCTTCCCC
T ss_pred EeCCCEEEEcCCCeEEEEccccCCCccc-------------------cCCCccEEEEEECCCCCCcccEEEeCCCccccc
Confidence 4567889999999999999996321000 011245699999754211 111100 0
Q ss_pred eecCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941 84 ITNNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 84 ~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
....+|+.+... ....++|.|.+++.+|+|.|.|.+.+..
T Consensus 71 ~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~ 111 (132)
T 1nko_A 71 EETRDRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGN 111 (132)
T ss_dssp GGGTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETT
T ss_pred cccCccEEEeCCCCCCceEEEEcccCcccCeeEEEEEEcCC
Confidence 112467777543 2456799999999999999999997643
No 470
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.13 E-value=6.1e-10 Score=79.81 Aligned_cols=98 Identities=19% Similarity=0.237 Sum_probs=66.0
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN 87 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 87 (238)
.|.+...+....+..|+++.|.|.+. +.|.+.+.|++++..+.... ..
T Consensus 108 ~p~~~~~~~~~~~~~g~~v~l~C~~~--------------------------g~p~p~v~W~~~g~~l~~~~------~~ 155 (212)
T 2yd6_A 108 FPTIDMGPQLKVVERTRTATMLCAAS--------------------------GNPDPEITWFKDFLPVDTSN------NN 155 (212)
T ss_dssp CCEEEECCCCEEEETTSCEEEEEEEE--------------------------CSSCCEEEEEETTEEC------------
T ss_pred cceeecCCcceeEecCCCEEEEEEec--------------------------CCCCCeEEEEECCccccCcC------CC
Confidence 36777777888899999999999985 34567899999876543221 12
Q ss_pred ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEcCCc
Q psy7941 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVIPPD 138 (238)
Q Consensus 88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~~~~ 138 (238)
.++..... .....|.|.+++.+|+|.|+|.+.|..+. +..+.|.|..++.
T Consensus 156 ~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~~ 207 (212)
T 2yd6_A 156 GRIKQLRS-ESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKH 207 (212)
T ss_dssp CCEEEEEE-TTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred ceEEEEec-CCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEeccc
Confidence 23333222 22349999999999999999999886432 3456677776554
No 471
>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}
Probab=99.13 E-value=2.7e-10 Score=74.12 Aligned_cols=88 Identities=18% Similarity=0.396 Sum_probs=57.8
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee--eeeeeeeEee
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA--VLAIHEHVIT 85 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~--~~~~~~~~~~ 85 (238)
...+..++..+.+.+|++++|.|.+... .+.+.+.|||+++.. ....... .
T Consensus 7 ~~~v~q~p~~~~~~~G~~v~L~C~~~~~-------------------------~~~~~v~W~r~~~~~~~~i~~~~~--~ 59 (120)
T 2yz1_A 7 ELKVTQPEKSVSVAAGDSTVLNCTLTSL-------------------------LPVGPIKWYRGVGQSRLLIYSFTG--E 59 (120)
T ss_dssp CCCEECCSSEEEECTTCCEEECCEESCC-------------------------CSCCCEEEEESSSTTCEEEEEECE--E
T ss_pred cEEEECCCceEEEeCCCCEEEEeEECCC-------------------------CCCcEEEEEcCCCCCcEEEEEcCC--c
Confidence 4556677889999999999999998632 123469999975321 1111110 0
Q ss_pred cCccEEEEE----cCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 86 NNARLSVTH----NDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 86 ~~~~~~~~~----~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
...|+.... .....++|.|.+++.+|+|.|+|.+.+.
T Consensus 60 ~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 100 (120)
T 2yz1_A 60 HFPRVTNVSDATKRNNMDFSIRISNVTPEDAGTYYCVKFQK 100 (120)
T ss_dssp CTTTCCSEEECCBSSTTBCCEEECSCCGGGCEEEEEEEEEC
T ss_pred ccCcccceeeccccCCCeEEEEECCCCHHHCEEEEEEEEcC
Confidence 112333221 1234568999999999999999998654
No 472
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.13 E-value=2e-10 Score=82.08 Aligned_cols=96 Identities=22% Similarity=0.375 Sum_probs=64.5
Q ss_pred cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN 86 (238)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 86 (238)
.+|.+...+....+..|+++.|.|.+. .+.|.+.+.|++++..+.. .
T Consensus 110 ~~~~~~~~~~~~~~~~g~~~~l~C~~~-------------------------~~~p~~~v~W~~~~~~l~~--------~ 156 (212)
T 2v9r_A 110 LRDDFRQNPSDVMVAVGEPAVMECQPP-------------------------RGHPEPTISWKKDGSPLDD--------K 156 (212)
T ss_dssp ECSSCSBCCCCEEEETTSCEEEECBCC-------------------------CEESCCEEEEEETTEEECT--------T
T ss_pred ccccceeCCCceEecCCCcEEEEEecC-------------------------CCCCCCEEEEEECCccCCC--------C
Confidence 355666667778899999999999872 1234678999998765421 1
Q ss_pred CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcc--eeeEEEEEcCCccc
Q psy7941 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK--QMAFLEVVIPPDIS 140 (238)
Q Consensus 87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~l~v~~~~~~~ 140 (238)
..++..... +|.|.+++.+|+|.|+|.+.|..... ..+.|.|..+|.+.
T Consensus 157 ~~~~~~~~~-----~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~~ 207 (212)
T 2v9r_A 157 DERITIRGG-----KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFV 207 (212)
T ss_dssp STTEEEETT-----EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-----
T ss_pred cceEEccCC-----eEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchHh
Confidence 223333222 89999999999999999998864432 23678888777654
No 473
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.13 E-value=1.3e-10 Score=92.68 Aligned_cols=88 Identities=24% Similarity=0.423 Sum_probs=65.8
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
+....+.+|+.+.|.|.+ +.|.|.+.|+++++....... .........++.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 348 ~~~~~v~~G~~v~L~C~~-~~p~p~i~W~~~~~~~~~~~~---~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~- 422 (440)
T 3zyj_A 348 PADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGA---YKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGN- 422 (440)
T ss_dssp CCCEEECTTSCCEECCEE-SSTTSEEEEECTTSCEEESSS---CCSSEEECTTCCEEESSCCSTTCEEEEEEEECSSCE-
T ss_pred ccceeeccCceEEEEeec-CCCCCceEEEeCCCceeeccC---CCceEEEccCCeEEEccCChhhCEEEEEEEEcCCCc-
Confidence 455778999999999999 568899999996655443211 112333344567999999999999999999999994
Q ss_pred ccceEEEEEEeec
Q psy7941 225 VSKRLMLHVHCTY 237 (238)
Q Consensus 225 ~~~~~~l~V~~~p 237 (238)
.+.++.+.|..+|
T Consensus 423 ~~~~~~~~v~~~~ 435 (440)
T 3zyj_A 423 TTASATLNVTGTH 435 (440)
T ss_dssp EEEEEEEEEC---
T ss_pred EEEEEEEEEeccc
Confidence 4888888888765
No 474
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Probab=99.13 E-value=6.9e-10 Score=72.20 Aligned_cols=84 Identities=19% Similarity=0.341 Sum_probs=59.0
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccE
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARL 90 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 90 (238)
+...+..+.+.+|++++|.|.+.... .+.+.+.||++...... ...+...+|+
T Consensus 3 v~Q~p~~v~v~~G~~vtL~C~~s~~~------------------------~~~~~v~Wyrq~~g~~~---~~~~~~~~R~ 55 (121)
T 2i24_N 3 VDQTPQRITKETGESLTINCVVRDSR------------------------CVLSTGYWYRKPPGSRN---EESISDGGRY 55 (121)
T ss_dssp EEEECSEEEEETTCCEEEEEEECSCC------------------------CCEEEEEEEEECTTCSC---CEEECSBTTE
T ss_pred cEECCcEEEEecCCcEEEEeEccCCC------------------------CCCCEEEEEEeCCCCCc---eeeEecCCCe
Confidence 45678889999999999999986421 01346999996421111 0112245677
Q ss_pred EEEE-cCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941 91 SVTH-NDANTWTLNIRSVRREDRGYYMCQVNT 121 (238)
Q Consensus 91 ~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 121 (238)
.... .....++|+|.+++.+|+|.|.|.+..
T Consensus 56 ~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~ 87 (121)
T 2i24_N 56 VETVNRGSKSFSLRINDLTVKDSGTYRCKPES 87 (121)
T ss_dssp EEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred EEEecCCCCEEEEEECCCChhhCEEEEEEEec
Confidence 6543 345678999999999999999999863
No 475
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.12 E-value=2.1e-10 Score=80.90 Aligned_cols=87 Identities=29% Similarity=0.473 Sum_probs=62.0
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
+....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+...... ............|.|.++..+|.|.|+|.+.|..|.
T Consensus 12 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~- 88 (194)
T 2a38_A 12 LQSVVVLEGSTATFEAHISGFPVPEVSWFR-DGQVISTSTLP-GVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQ- 88 (194)
T ss_dssp CCCEEEETTSCEEEEEEEEEESCCEEEEEE-SSSBCCTTTST-TCEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEE-
T ss_pred CCceEEECCCEEEEEEEEEecCCCEEEEEE-CCEEcccccCC-ceEEEeCCCEEEEEECCCCcccCEEEEEEEEcCCce-
Confidence 344678899999999999999999999999 44433221100 001111122347999999999999999999999884
Q ss_pred ccceEEEEEE
Q psy7941 225 VSKRLMLHVH 234 (238)
Q Consensus 225 ~~~~~~l~V~ 234 (238)
....+.|.|.
T Consensus 89 ~~~~~~l~v~ 98 (194)
T 2a38_A 89 ATSTAELLVK 98 (194)
T ss_dssp EEEEEEEEEE
T ss_pred EeEEEEEEEc
Confidence 3666777776
No 476
>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble protein, KD, protein engineering, immunotherapy, immune-suppressor, immune system; 2.10A {Homo sapiens} PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A
Probab=99.12 E-value=4.6e-10 Score=72.31 Aligned_cols=86 Identities=22% Similarity=0.407 Sum_probs=57.8
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--c---e-eeeeeeee--
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--T---K-AVLAIHEH-- 82 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~---~-~~~~~~~~-- 82 (238)
+...|..+.+.+|++++|.|.+.... +...+.||+.. . . .+......
T Consensus 3 ~~q~p~~v~v~~G~~vtL~C~~~~~~-------------------------~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~ 57 (114)
T 2hp4_A 3 FRVSPLDRTWNLGETVELKCQVLLSN-------------------------PTSGASWLFQPRGAAASPTFLLYLNQNKP 57 (114)
T ss_dssp EEEECCSCCCCTTCCEEEEEEECCSS-------------------------CCSCEEEEEEESSSSCCCEEEEEESSSSC
T ss_pred cEeCCCEEEEcCCCCEEEEEEeecCC-------------------------CCceEEEEEECCCCCCCcEEEEEEcCCCc
Confidence 45667888899999999999996321 12359999852 2 1 11111110
Q ss_pred Eee---cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 83 VIT---NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 83 ~~~---~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
... ...||..... ...++|+|.+++.+|+|.|.|.+.+.
T Consensus 58 ~~~~~~~~~rf~~~~~-~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 99 (114)
T 2hp4_A 58 KAAEGLDTQRFSGKRL-GDTFVLTLSDFRRENEGYYFCSALSN 99 (114)
T ss_dssp EECTTCCTTTEEEEEE-TTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred cccCCCCcccEEEEec-CCEEEEEECCCCHHHCEEEEEEEecC
Confidence 011 1467877653 45679999999999999999998653
No 477
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A
Probab=99.12 E-value=4.5e-10 Score=71.85 Aligned_cols=93 Identities=18% Similarity=0.361 Sum_probs=58.9
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee----eeEee--cC
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH----EHVIT--NN 87 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~----~~~~~--~~ 87 (238)
+...+.+.+|++++|.|.+.. + .+.+.+.|++..+..+.... ..... ..
T Consensus 9 ~~~~v~~~~G~~v~L~C~~~~--~-----------------------~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~ 63 (110)
T 2ptt_A 9 SIPDINAYTGSNVTLKIHKDP--L-----------------------GPYRRITWLHTKNQKILEYNYNSTKTIFESEFK 63 (110)
T ss_dssp CCCSEEEETTSCEEECSCSSC--C-----------------------CSCSEEEEEESTTBEEEEEETTSCEEECSSTTT
T ss_pred CCCCEEEecCCcEEEeCCccC--C-----------------------CCcCEEEEEecCCccEEEEECCCCceeeccccC
Confidence 345678999999999999731 1 12346999995433211110 00111 12
Q ss_pred ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEE
Q psy7941 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVV 134 (238)
Q Consensus 88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~ 134 (238)
+|+.+.. ..++|.|.+++.+|+|.|+|.+.+.......+.|.|.
T Consensus 64 ~R~~~~~---~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~L~V~ 107 (110)
T 2ptt_A 64 GRVYLEE---NNGALHISNVRKEDKGTYYMRVLRETENELKITLEVF 107 (110)
T ss_dssp TTEEECT---TTCCEEESSCCGGGCEEEEEEEESSSBCCEEEEEEEE
T ss_pred CcEEEeC---CCccEEECCCCcccCeEEEEEEEcCCCcEEEEEEEEE
Confidence 4666532 4558999999999999999999765433445556665
No 478
>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A
Probab=99.12 E-value=5e-10 Score=71.90 Aligned_cols=84 Identities=14% Similarity=0.234 Sum_probs=58.1
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeee-eeEee
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIH-EHVIT 85 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~-~~~~~ 85 (238)
+...+..+.+.+|++++|.|.+.... .+.+.|++.... .+.... .....
T Consensus 3 v~q~p~~~~~~~G~~v~L~C~~~~~~--------------------------~~~v~W~rq~~~~~~~~l~~~~~~~~~~ 56 (112)
T 2z35_A 3 VTQTGGQVALSEEDFLTIHCNYSASG--------------------------YPALFWYVQYPGEGPQFLFRASRDKEKG 56 (112)
T ss_dssp EECSCSEEEEETTCCEEECCEEECSS--------------------------CCEEEEEEECTTSCCEEEEEECSTTCEE
T ss_pred eEeCCCcEEEcCCCCEEEEEEECCCC--------------------------CCeEEEEEECCCCCcEEeEEEecccCCc
Confidence 45667889999999999999986431 345999996421 111110 00011
Q ss_pred cCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941 86 NNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVN 120 (238)
Q Consensus 86 ~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~ 120 (238)
..+||.+.. .....++|.|.+++.+|+|.|.|.+.
T Consensus 57 ~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~ 92 (112)
T 2z35_A 57 SSRGFEATYNKEATSFHLQKASVQESDSAVYYCALS 92 (112)
T ss_dssp EETTEEEECBTTTTBCCEEESSCCSTTCSEEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCChhhCEEEEEEEE
Confidence 246777763 34467799999999999999999986
No 479
>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*
Probab=99.11 E-value=5.6e-10 Score=71.67 Aligned_cols=85 Identities=11% Similarity=0.187 Sum_probs=57.0
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeeee---e
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIHE---H 82 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~---~ 82 (238)
.+...+..+.+.+|++++|.|.+.+.. .+.+.||+.... .+..... .
T Consensus 3 ~v~q~p~~~~v~~G~~vtL~C~~~~~~--------------------------~~~v~W~rq~~~~~~~~l~~~~~~~~~ 56 (112)
T 1fo0_B 3 LLEQNPRWRLVPRGQAVNLRCILKNSQ--------------------------YPWMSWYQQDLQKQLQWLFTLRSPGDK 56 (112)
T ss_dssp SEEEECSEEECCTTCCEEEEEEESCTT--------------------------CCEEEEEEECTTCCEEEEEECCSTTCE
T ss_pred cEEeCCCeEEEecCCcEEEEEEeCCCC--------------------------CceEEEEEECCCCCCEEEEEEeCCCce
Confidence 345667888999999999999986322 345999986421 1111100 0
Q ss_pred E-eec-CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 83 V-ITN-NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 83 ~-~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
. -.. ++||.+...... +|.|.+++.+|+|.|.|.+...
T Consensus 57 ~~~~~~~~Rf~~~~~~~~--~L~I~~~~~~Dsg~Y~C~~~~~ 96 (112)
T 1fo0_B 57 EVKSLPGADYLATRVTDT--ELRLQVANMSQGRTLYCTCSAD 96 (112)
T ss_dssp EEEEETTEEEEEEEEETT--EEEEEEESCCSCEEEEEEEESS
T ss_pred ecCccccCCEEEEcCCCC--eEEEcCCCHhHCEEEEEEEEcC
Confidence 0 001 267777654333 8999999999999999998653
No 480
>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A
Probab=99.11 E-value=4.3e-10 Score=73.95 Aligned_cols=86 Identities=16% Similarity=0.407 Sum_probs=55.8
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee--eeeeeeeEeecC
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA--VLAIHEHVITNN 87 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~--~~~~~~~~~~~~ 87 (238)
.+..++..+.+.+|++++|.|.+.... +.+.+.||++.+.. ....... ...
T Consensus 5 ~v~q~p~~~~v~~G~~vtL~C~~~~~~-------------------------~~~~v~W~r~~~~~~~li~~~~~--~~~ 57 (127)
T 2jju_A 5 QVIQPEKSVSVAAGESATLRCAMTSLI-------------------------PVGPIMWFRGAGAGRELIYNQKE--GHF 57 (127)
T ss_dssp CEECCCSEEEEETTSCEEECCEESCCC-------------------------SCCCEEEEECSSTTCEEEEESSS--SCC
T ss_pred EEEeeCCeEEEeCCCCEEEEEEEeCCC-------------------------CCCEEEEEecCCCCcEEEEECCC--Ccc
Confidence 445677889999999999999986321 23469999976321 1111000 001
Q ss_pred ccEEEEE----cCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 88 ARLSVTH----NDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 88 ~~~~~~~----~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
.|+.... .....++|.|.+++.+|+|.|+|.+.+.
T Consensus 58 ~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 96 (127)
T 2jju_A 58 PRVTTVSELTKRNNLDFSISISNITPADAGTYYCVKFRK 96 (127)
T ss_dssp TTEEEC-------CCBCCEEECSCCGGGCEEEEEEEEEC
T ss_pred CcEEeeEeeeecCCCEEEEEECCCCHHHCEEEEEEEEcC
Confidence 2454321 1224568999999999999999998764
No 481
>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Probab=99.11 E-value=1.3e-09 Score=72.36 Aligned_cols=88 Identities=20% Similarity=0.271 Sum_probs=58.2
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceee---eeeee-----
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAV---LAIHE----- 81 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~---~~~~~----- 81 (238)
.+..++..+.+.+|++++|.|.+... .+.+.+.+.|++++.... .....
T Consensus 6 ~v~~~~~~v~v~~G~~v~L~C~~~~~-----------------------~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~ 62 (135)
T 1xt5_A 6 TVRTTHTEVEVHAGGTVELPCSYQLA-----------------------NDTQPPVISWLKGASPDRSTKVFKGNYNWQG 62 (135)
T ss_dssp EEECSCSEEEEETTSCEEECCEEEEE-----------------------TCCSCCEEEEEEESSSSSEEEEEEEEECCCC
T ss_pred EEeCCCceEEEeCCCCEEEeeEeecC-----------------------CCCCccEEEEEeeCCCCCceEEEEecccccc
Confidence 44567788999999999999998631 112356799999754321 11100
Q ss_pred -----------eE--eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 82 -----------HV--ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 82 -----------~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
.. ....+|+.+.. ....+|.|.+++.+|+|.|+|.+.+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~R~~~~~--~~~~sL~I~~v~~~D~G~Y~C~v~~~ 114 (135)
T 1xt5_A 63 EGLGFVESDSYKESFGDFLGRASVAN--LAAPTLRLTHVHPQDGGRYWCQVAQW 114 (135)
T ss_dssp TTCCCCTTSEEEEECGGGTTTEEESC--TTSCCEEECSCCGGGCEEEEEEEECS
T ss_pred ccccccccccccccChhhcCcEEEec--CCCCeEEECCCChhhCcEEEEEEEcC
Confidence 00 01125666533 33468999999999999999999764
No 482
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Probab=99.10 E-value=5e-10 Score=71.57 Aligned_cols=88 Identities=15% Similarity=0.157 Sum_probs=60.7
Q ss_pred eecCCCcEEEEEEEccccCCeEEEEeCCCe----eeE-e-------ecCCCCCcceEEEeeceEEEEEeecCCCeEEEEE
Q psy7941 149 MVPEGGSAKLVCKAKGYPTPKITWRREDNK----EII-V-------RSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCI 216 (238)
Q Consensus 149 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~----~~~-~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 216 (238)
.+.+|+++.|.|.....+...+.|+++... .+. - ...+....+.....+++|.|.+++.+|+|.|+|.
T Consensus 11 ~~~~G~~v~L~~~~~p~~~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~~~ngSL~I~nvt~~D~G~Ytc~ 90 (111)
T 2qsq_A 11 NVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDAGFYTLH 90 (111)
T ss_dssp EEETTSCEEEEEESCCSSEEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEECTTSCEEECSCCGGGCEEEEEE
T ss_pred eeccCCCEEEEEeCCCCCceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEEecCCcEEEccCcccCCeEEEEE
Confidence 577899999999753333447999994321 111 0 0011123444555678999999999999999999
Q ss_pred eeeCCCCCccceEEEEEEee
Q psy7941 217 AANGVPPTVSKRLMLHVHCT 236 (238)
Q Consensus 217 ~~n~~g~~~~~~~~l~V~~~ 236 (238)
+.+..+.....++.|.|..+
T Consensus 91 v~~~~~~~~~~~~~L~V~~~ 110 (111)
T 2qsq_A 91 VIKSDLVNEEATGQFRVYPE 110 (111)
T ss_dssp EEETTSCCEEEEEEEEEECC
T ss_pred EEeCCCcEEEEEEEEEEecC
Confidence 99987644577888888753
No 483
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.10 E-value=1.9e-10 Score=82.95 Aligned_cols=79 Identities=28% Similarity=0.347 Sum_probs=63.5
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
+....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+.. .....|.|.++..+|+|.|+|.+.|..|..
T Consensus 25 p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~-~~~~~~~------------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~ 91 (218)
T 3k0w_A 25 PESKAVLAGQFVKLCCRATGHPFVQYQWFK-MNKEIPN------------GNTSELIFNAVHVKDAGFYVCRVNNNFTFE 91 (218)
T ss_dssp CCCEEEETTSBEEEECEETTTTSSEEEEEE-TTEECTT------------CCSSEEEETTCCGGGCEEEEEEEECTTCCE
T ss_pred CCCeEEeCCCcEEEEeeecCCCCCEEEEEE-CCEECCC------------CCCCEEEEccCChhhCeEeEEEEEcCCCCc
Confidence 455678899999999999999999999999 4443321 124579999999999999999999998865
Q ss_pred ccceEEEEEEee
Q psy7941 225 VSKRLMLHVHCT 236 (238)
Q Consensus 225 ~~~~~~l~V~~~ 236 (238)
.+..+.|.|...
T Consensus 92 ~s~~~~l~V~~~ 103 (218)
T 3k0w_A 92 FSQWSQLDVCDI 103 (218)
T ss_dssp ECCCEEEEEECC
T ss_pred eeeEEEEEEEcc
Confidence 567778888754
No 484
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.10 E-value=3.3e-10 Score=80.93 Aligned_cols=92 Identities=23% Similarity=0.470 Sum_probs=65.6
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeec-----CCCCCcceEEEeeceEEEEEeecCCCeEEEEEeee
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRS-----NPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n 219 (238)
+..+.+.+|+.+.|.|.+.+.|.+.+.|++++........ ....... .......|.|.++..+|.|.|+|.+.|
T Consensus 8 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 86 (212)
T 1f97_A 8 QSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADR-VTFSSSGITFSSVTRKDNGEYTCMVSE 86 (212)
T ss_dssp CSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTT-EEEETTEEEESCCCGGGCEEEEEEEEE
T ss_pred CCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCc-EEeeceeEEEcccCcccCeEEEEEEEc
Confidence 4556788999999999999989999999995544211100 0001112 223347899999999999999999999
Q ss_pred CCCC-CccceEEEEEEeec
Q psy7941 220 GVPP-TVSKRLMLHVHCTY 237 (238)
Q Consensus 220 ~~g~-~~~~~~~l~V~~~p 237 (238)
..|. ..+..+.|.|..+|
T Consensus 87 ~~g~~~~~~~~~l~V~~~p 105 (212)
T 1f97_A 87 EGGQNYGEVSIHLTVLVPP 105 (212)
T ss_dssp TTSSSEEEEEEEEEEEBCC
T ss_pred cCCCcccEEEEEEEEEcCC
Confidence 8762 23567888888776
No 485
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X*
Probab=99.10 E-value=7.3e-10 Score=71.62 Aligned_cols=86 Identities=15% Similarity=0.290 Sum_probs=55.8
Q ss_pred cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC-ce-----eeeeeee--eEee
Q psy7941 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD-TK-----AVLAIHE--HVIT 85 (238)
Q Consensus 14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~-~~-----~~~~~~~--~~~~ 85 (238)
++..+.+.+|++++|.|.+..... ....+.|++.. .. .+..... ....
T Consensus 2 s~~~v~~~~G~~vtL~C~~~~~~~------------------------~~~~v~W~r~~~~~~~~~~~l~~~~~~~~~~~ 57 (116)
T 3bia_X 2 SEDTIIGFLGQPVTLPCHYLSWSQ------------------------SRNSMCWGKGSCPNSKCNAELLRTDGTRIISR 57 (116)
T ss_dssp -CEEEEEETTSCEEECCBCTTCCT------------------------TTCEEEEEESSCCSSSCTTEEEEECSSSEEEE
T ss_pred CccEEEEeeCCcEEEEEEeeCCCC------------------------CeEEEEEeeecCCCCCCceEEEEECCcccccc
Confidence 356788999999999999852110 12359999976 21 1111111 1122
Q ss_pred cCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941 86 NNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNP 123 (238)
Q Consensus 86 ~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 123 (238)
...|+.+.. ...+.++|+|.+++.+|+|.|.|.+...+
T Consensus 58 ~~~r~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~v~~~~ 96 (116)
T 3bia_X 58 KSTKYTLLGKVQFGEVSLTISNTNRGDSGVYCCRIEVPG 96 (116)
T ss_dssp SSTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEECSS
T ss_pred cCceEEEeccCCCCEEEEEEccCChhHCEEEEEEEEcCC
Confidence 345666543 23467799999999999999999997543
No 486
>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold, toxin-immune system complex; 2.95A {Rattus norvegicus}
Probab=99.10 E-value=1.4e-09 Score=71.26 Aligned_cols=88 Identities=14% Similarity=0.237 Sum_probs=61.0
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--e--eeeeeee--
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--K--AVLAIHE-- 81 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~--~~~~~~~-- 81 (238)
...+..++..+.+.+|++++|.|.+.... ...+.||+... . .+.....
T Consensus 5 ~~~V~Q~p~~~~v~~G~~vtL~C~~~~~~--------------------------~~~v~Wyrq~~g~~~~~l~~~~~~~ 58 (125)
T 3r8b_B 5 EAAVTQSPRNKVAVTGEKVTLSCKQTNSY--------------------------FNNMYWYRQDTGHELRLIFMSHGIR 58 (125)
T ss_dssp CCEEEEECSEEEEETTCCEEEEEEEESCC--------------------------CSEEEEEEECTTSCEEEEEEESSTT
T ss_pred cCcEEecCCeEEEcCCCcEEEEEEECCCC--------------------------CCeEEEEEECCCCCcEEEEEEcCCc
Confidence 34567788899999999999999986421 23599998532 1 1111100
Q ss_pred --eEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941 82 --HVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121 (238)
Q Consensus 82 --~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 121 (238)
..-...+||.+.......++|+|.+++.+|+|.|+|.+..
T Consensus 59 ~~~~~~~~~Rf~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~ 100 (125)
T 3r8b_B 59 NVEKGDIPDGYKASRPSQENFSLILELATPSQTSVYFCASGG 100 (125)
T ss_dssp CCEECSSCTTCEEEEEETTEEEEEETTCCGGGCEEEEEEEEE
T ss_pred cccCCCCCCceEEEecCCCEEEEEECCCChhhCEEEEEEEcC
Confidence 0111246787765446788999999999999999999854
No 487
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=99.10 E-value=4.4e-10 Score=80.00 Aligned_cols=79 Identities=22% Similarity=0.356 Sum_probs=62.2
Q ss_pred eeecCCCcEEEEEEEccccCC--eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCc
Q psy7941 148 MMVPEGGSAKLVCKAKGYPTP--KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTV 225 (238)
Q Consensus 148 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~ 225 (238)
+.+..|+++.|.|.+ +.|.| .|.|++.+.. + ...........|.|.+++.+|.|.|.|.+.|..+ ..
T Consensus 17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~-l--------~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~-~~ 85 (210)
T 1gsm_A 17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTS-L--------GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGR-TF 85 (210)
T ss_dssp EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTT-T--------CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTE-EE
T ss_pred eEEeCCCCEEEEEEC-CCCCCCcceEEeecccc-c--------CcEEecCCccEEEECccCcccCceEEEEEEeCCC-ce
Confidence 578899999999999 87777 9999984422 1 0111123345799999999999999999999887 45
Q ss_pred cceEEEEEEeec
Q psy7941 226 SKRLMLHVHCTY 237 (238)
Q Consensus 226 ~~~~~l~V~~~p 237 (238)
.+.+.|.|+.+|
T Consensus 86 ~~~~~ltV~~~P 97 (210)
T 1gsm_A 86 QHTVQLLVYAFP 97 (210)
T ss_dssp EEEEEEEEEBCC
T ss_pred EEEEEEEEEecC
Confidence 789999999887
No 488
>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A
Probab=99.09 E-value=4.3e-10 Score=71.86 Aligned_cols=86 Identities=17% Similarity=0.309 Sum_probs=57.3
Q ss_pred eeccCceeEEEecCCEEEEeE-EecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee--e-eeEeec
Q psy7941 11 FLYPLENVTIAQGRDAIFTCV-VNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI--H-EHVITN 86 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~--~-~~~~~~ 86 (238)
+.. |..+.+.+|++++|.|. +..... .+.+.|++.......-. . ......
T Consensus 4 v~q-p~~~~v~~G~~v~L~C~v~~~~~~-------------------------~~~v~W~r~~~~~~~l~~~~~~~~~~~ 57 (109)
T 1pew_A 4 LNQ-PHSVSESPGKTVTISCTRSSGNIA-------------------------SNYVQWYQQRSAPITVIYEDNQRPSGV 57 (109)
T ss_dssp EEC-CSEEEECTTSCEEEEEEESSSCGG-------------------------GSCCEEEEC-CCCEEEEBTTTBCCTTC
T ss_pred EEC-CCCEEEcCCCCEEEEEEeCCCCCC-------------------------CccEEEEEECCCCcEEEEecCCcCCCC
Confidence 345 67889999999999999 653210 24599999762211100 0 000012
Q ss_pred CccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 87 NARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 87 ~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
.+|+.+.. .....++|+|.+++.+|+|.|.|.+.+.
T Consensus 58 ~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 94 (109)
T 1pew_A 58 PDRFAGSIDRSSNSASLTISGLKTEDEADYYCQSYDA 94 (109)
T ss_dssp CTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred CCcEEEEeccCCCEEEEEECCCChhhCEEEEEEEEeC
Confidence 46787764 3456789999999999999999999653
No 489
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET: NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G* 3b9k_A* 2atp_A* 2arj_R
Probab=99.09 E-value=1.4e-09 Score=71.50 Aligned_cols=87 Identities=17% Similarity=0.403 Sum_probs=60.4
Q ss_pred ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce-------eeeeee
Q psy7941 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK-------AVLAIH 80 (238)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-------~~~~~~ 80 (238)
.+.+...+..+.+.+|++++|.|.+.+... ..+.||+.... .+....
T Consensus 4 ~~~v~Q~p~~~~v~~G~~vtL~C~~s~~~~--------------------------~~v~WyrQ~~g~~l~~p~~l~~~~ 57 (128)
T 1nez_G 4 APELRIFPKKMDAELGQKVDLVCEVLGSVS--------------------------QGCSWLFQNSSSKLPQPTFVVYMA 57 (128)
T ss_dssp CCEEEEESSCEEECTTCCEEEEEEEESCCS--------------------------SCEEEEEEESSCSSCCCEEEEEEC
T ss_pred CCeeEECCCeEEEcCCCCEEEEEEeCccCC--------------------------CcEEEEEeCCCCCCCCcEEEEEEe
Confidence 466778888999999999999999864321 24899985321 111111
Q ss_pred e---eEe-----ecCccEEE-EEcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941 81 E---HVI-----TNNARLSV-THNDANTWTLNIRSVRREDRGYYMCQVNT 121 (238)
Q Consensus 81 ~---~~~-----~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 121 (238)
. ... ....||.. .. ....+.|.|.+++.+|+|.|.|.+..
T Consensus 58 ~~~~~~~~~~~~~~~~rfs~~~~-~~~~~~L~I~~~~~~Dsg~YyCa~~~ 106 (128)
T 1nez_G 58 SSHNKITWDEKLNSSKLFSAMRD-TNNKYVLTLNKFSKENEGYYFCSVIS 106 (128)
T ss_dssp SSSCCEEECTTTTGGGTEEEEEE-TTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred cccCCceeeccccCCCcEEEEeC-CCCEEEEEECCCCHHHCEEEEEEEcC
Confidence 1 000 01368887 54 34578999999999999999999854
No 490
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.09 E-value=2.5e-10 Score=80.86 Aligned_cols=81 Identities=16% Similarity=0.225 Sum_probs=58.8
Q ss_pred eecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC-CCccc
Q psy7941 149 MVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP-PTVSK 227 (238)
Q Consensus 149 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g-~~~~~ 227 (238)
.+.+|+.+.|.|.+.+ |.+.+.|++++. .+..... ..........|.|.++..+|+|.|+|.|.|..| ...+.
T Consensus 15 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~-~~~~~~~----~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~ 88 (196)
T 3p2t_A 15 VISWGNSVTIWCQGTL-EAREYRLDKEES-PAPWDRQ----NPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSD 88 (196)
T ss_dssp EEETTCCEEEEEECCT-TCCEEEEEETTS-CSCSEEE----CCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCC
T ss_pred cCCCCCcEEEEeeCCC-CCCEEEEEECCC-CCccccc----ccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCc
Confidence 6788999999999988 778999999543 3221100 000012345799999999999999999999987 34567
Q ss_pred eEEEEEEe
Q psy7941 228 RLMLHVHC 235 (238)
Q Consensus 228 ~~~l~V~~ 235 (238)
.+.|.|..
T Consensus 89 ~~~l~V~~ 96 (196)
T 3p2t_A 89 PLELVMTG 96 (196)
T ss_dssp CEEEEEEC
T ss_pred cEEEEecC
Confidence 77777753
No 491
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.09 E-value=6.5e-10 Score=70.34 Aligned_cols=75 Identities=19% Similarity=0.357 Sum_probs=53.0
Q ss_pred eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeec---eEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE---VLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
..+.+|+.+.|.|.+ +.|.+.+.|++ ++..+.... ........+ .|.|.++..+|+|.|+|.+.+.
T Consensus 26 ~~v~~G~~v~L~C~~-~~p~~~v~W~k-~g~~l~~~~-----~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~---- 94 (104)
T 1pd6_A 26 YQVSKGHKIRLTVEL-ADHDAEVKWLK-NGQEIQMSG-----SKYIFESIGAKRTLTISQCSLADDAAYQCVVGGE---- 94 (104)
T ss_dssp EEEETTSCEEEEEEC-SSSSSCCEEEE-SSSEECCCS-----SSSEEEEETTEEEEEECSCSSSSCEEEEEEETTE----
T ss_pred EEEecCCCEEEEEEE-cCCCCEEEEEE-CCEECCCCC-----CeEEEEecCCEEEEEECCCCcccCEEEEEEECCC----
Confidence 678899999999999 78888999999 554443210 111112222 7999999999999999999442
Q ss_pred ccceEEEEEE
Q psy7941 225 VSKRLMLHVH 234 (238)
Q Consensus 225 ~~~~~~l~V~ 234 (238)
..+..|.|.
T Consensus 95 -~~~~~l~V~ 103 (104)
T 1pd6_A 95 -KCSTELFVK 103 (104)
T ss_dssp -EECCEEEEE
T ss_pred -cEEEEEEEe
Confidence 344455554
No 492
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4
Probab=99.08 E-value=1.9e-09 Score=66.53 Aligned_cols=92 Identities=17% Similarity=0.245 Sum_probs=59.8
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEE
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTH 94 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (238)
.....+..|+.+.|.|.+.. ..+.|+++|.|.++........ ....+.+...
T Consensus 21 ~S~~tv~~G~~~~LeCpv~y-------------------------c~~rPnVtWcK~~~~~c~~L~~---~~q~~~~w~e 72 (122)
T 1xau_A 21 NSKHSAWTGELFKIECPVKY-------------------------CVHRPNVTWCKHNGTIWVPLEV---GPQLYTSWEE 72 (122)
T ss_dssp TEEEEECTTSCEEEEEEEEC-------------------------SSSCCCEEEEEECSSSEEECCC---BTTEEEEEEC
T ss_pred eccEEEecCCeEEEEeEecC-------------------------CCCCCcEEEEecCCeecccccc---ceeeecceec
Confidence 34567889999999999963 2347789999987643332110 0111222222
Q ss_pred c-CCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEE
Q psy7941 95 N-DANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVV 134 (238)
Q Consensus 95 ~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~ 134 (238)
. +...+.|+|.++..+|+|.|.|.|.+... .+....|.|.
T Consensus 73 ~~n~s~fiL~f~~V~~sDsG~YrCsAn~~~g~ieSHs~ti~V~ 115 (122)
T 1xau_A 73 NRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQVINSHSVTIHVR 115 (122)
T ss_dssp SSSSCEEEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred cCCceeEEEEEeeEEEcCCccEEEEeeCCCCceeeeEEEEEEE
Confidence 2 22567999999999999999999977432 3334445554
No 493
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.08 E-value=7.3e-10 Score=80.80 Aligned_cols=87 Identities=17% Similarity=0.325 Sum_probs=59.9
Q ss_pred ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeee-eeeEe
Q psy7941 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAI-HEHVI 84 (238)
Q Consensus 10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~-~~~~~ 84 (238)
.+...+..+.+.+|+++.|.|.+.+ .|.+.+.|+|++.. .+... .....
T Consensus 129 ~v~~~p~~~~v~~G~~v~L~C~~~~--------------------------~p~~~i~W~k~~~~~~~~~~~~~~~~~~~ 182 (238)
T 2p1y_A 129 QVRQSPQSLTVWEGETAILNCSYEN--------------------------SAFDYFPWYQQFPGEGPALLISILSVSDK 182 (238)
T ss_dssp CCEEECSEEEEETTSCEEEEEECCC--------------------------TTCCEEEEEEECTTSCCEEEEEEETTCSE
T ss_pred eEEccCceEEEeCCCeEEEEEEEec--------------------------CCCCcEEEEEECCCCCCEEEEEEccCCCc
Confidence 5666778888999999999999853 33567999996421 11110 00011
Q ss_pred ecCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 85 TNNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 85 ~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
....|+.+.. ......+|.|.+++.+|+|.|+|.+.|.
T Consensus 183 ~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 221 (238)
T 2p1y_A 183 KEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDT 221 (238)
T ss_dssp EEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEET
T ss_pred ccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeC
Confidence 2245666653 2345669999999999999999999875
No 494
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A
Probab=99.08 E-value=1.1e-09 Score=73.13 Aligned_cols=90 Identities=18% Similarity=0.276 Sum_probs=60.2
Q ss_pred ceeecCCCcEEEEEEEcccc---CCeEEEEeCCCe-eeE-eecC--------CCCCcceEEEe------eceEEEEEeec
Q psy7941 147 DMMVPEGGSAKLVCKAKGYP---TPKITWRREDNK-EII-VRSN--------PPSSQKVFSVE------SEVLSLTKVTR 207 (238)
Q Consensus 147 ~~~~~~g~~~~l~C~~~~~p---~~~~~W~~~~~~-~~~-~~~~--------~~~~~~~~~~~------~~~l~i~~~~~ 207 (238)
.+.+..|+++.|.|.+.+.+ .+.+.|++.+.. .+. .... .....+..... ...|.|.+++.
T Consensus 15 ~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~ 94 (139)
T 1pko_A 15 PIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRF 94 (139)
T ss_dssp CEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCG
T ss_pred CEEEEeCCCEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccccccCCeEEEEEccCCH
Confidence 45688899999999987644 368999995432 111 1000 00112222211 34799999999
Q ss_pred CCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941 208 SEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237 (238)
Q Consensus 208 ~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p 237 (238)
+|+|.|+|.+.+..| .....+.|.|..|+
T Consensus 95 ~D~G~Y~C~v~~~~~-~~~~~~~L~V~~P~ 123 (139)
T 1pko_A 95 SDEGGYTCFFRDHSY-QEEAAVELKVEDPF 123 (139)
T ss_dssp GGCEEEEEEEEETTE-EEEEEEEEEEECTT
T ss_pred HHCEEEEEEEEcCCC-ceEEEEEEEEecCc
Confidence 999999999999887 44778889888554
No 495
>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*
Probab=99.08 E-value=5.5e-10 Score=72.65 Aligned_cols=87 Identities=17% Similarity=0.247 Sum_probs=56.8
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eeeee-eeEee
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLAIH-EHVIT 85 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~~~-~~~~~ 85 (238)
+..++ .+.+.+|++++|.|.+..... ...+.+.||+... .. +.... .....
T Consensus 4 v~q~~-~~~~~~G~~v~L~C~~~~~~~-----------------------~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~ 59 (120)
T 1oaq_L 4 VTQES-ALTTSPGETVTLTCRSSTGAV-----------------------TTSNYANWVQEKPDHLFTGLIGGTNNRAPG 59 (120)
T ss_dssp EEECS-EEEECTTCEEEEEEEETTBCC-----------------------CGGGCCEEEEEETTTEEEEEEETTTEECTT
T ss_pred EEcCC-cEEEcCCCCEEEEEEeCCCcc-----------------------CCCCEEEEEEeCCCCCCeEEEEEcCccCCC
Confidence 34444 489999999999999864320 0124599998632 11 11110 01011
Q ss_pred cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
..+|+.... ....++|+|.+++.+|+|.|.|.+.+.
T Consensus 60 ~~~R~~~~~-~~~~~~L~I~~~~~~DsG~Y~C~~~~~ 95 (120)
T 1oaq_L 60 VPARFSGSL-IGNKAALTITGAQTEDEAIYFCALWYS 95 (120)
T ss_dssp SCTTEEEEE-ETTEEEEEEESCCGGGCEEEEEEEEET
T ss_pred CCCceEEec-CCCeEEEEECCCChhhCeEEEEEEccC
Confidence 246787765 346779999999999999999999654
No 496
>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A
Probab=99.08 E-value=1.3e-09 Score=70.27 Aligned_cols=85 Identities=20% Similarity=0.407 Sum_probs=57.9
Q ss_pred eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--e--eeeeeee---eE
Q psy7941 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--K--AVLAIHE---HV 83 (238)
Q Consensus 11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~--~~~~~~~---~~ 83 (238)
+.. +..+.+.+|++++|.|.+.... +.+.+.|++... . .+..... ..
T Consensus 5 v~q-p~~~~~~~G~~v~L~C~~~~~~-------------------------~~~~v~W~rq~~~~~~~~l~~~~~~~~~~ 58 (115)
T 2otu_A 5 LTQ-SSSASFSLGASAKLTCTLSSQH-------------------------STYTIEWYQQQPLKPPKYVMELKKDGSHS 58 (115)
T ss_dssp EEE-CCCEECCTTCCEEEEEEECGGG-------------------------TTCCEEEEEECTTSCCEEEEEECTTSCEE
T ss_pred EEc-CCCEEECCCCCEEEEEEecCCC-------------------------CCeEEEEEEeCCCCCceEEEEEecCCcee
Confidence 445 6788999999999999986421 134599998532 1 1111110 11
Q ss_pred ee--cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941 84 IT--NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 84 ~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
.. ..+|+.+.. ....++|+|.+++.+|+|.|.|.+.+.
T Consensus 59 ~~~~~~~R~~~~~-~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 98 (115)
T 2otu_A 59 TGDGIPDRFSGSS-SGADRYLSISNIQPEDEAIYICGVGDT 98 (115)
T ss_dssp ECTTCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEEEEC
T ss_pred cCcccCCCEEEEc-cCCEEEEEECCCChhHCEEEEEEEecC
Confidence 11 146888775 356679999999999999999998653
No 497
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.08 E-value=2.3e-10 Score=88.91 Aligned_cols=86 Identities=19% Similarity=0.246 Sum_probs=65.1
Q ss_pred CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224 (238)
Q Consensus 145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~ 224 (238)
+..+.+.+|+.+.|.|.+.| |.|.+.|+++++...... ........ .++.|.|.+++.+|+|.|+|.|.|..| .
T Consensus 253 ~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~---~~~~r~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~g-~ 326 (361)
T 2xot_A 253 ESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQ---GSNGSVSV-RNGDLFFKKVQVEDGGVYTCYAMGETF-N 326 (361)
T ss_dssp CCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSC---CSSSSEEE-ETTEEEESSCCTTSCEEEEEEEECSSC-E
T ss_pred ccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeec---ccCCceEe-ecCeEEEeecCcccCEEEEEEEecCCC-c
Confidence 34567899999999999999 999999999555433211 11112223 667899999999999999999999988 4
Q ss_pred ccceEEEEEEee
Q psy7941 225 VSKRLMLHVHCT 236 (238)
Q Consensus 225 ~~~~~~l~V~~~ 236 (238)
.+.++.|.|...
T Consensus 327 ~~~~~~l~V~~~ 338 (361)
T 2xot_A 327 ETLSVELKVYNF 338 (361)
T ss_dssp EEEEEEEEEESS
T ss_pred cEEEEEEEEEee
Confidence 477888888643
No 498
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=99.08 E-value=6.2e-10 Score=72.16 Aligned_cols=71 Identities=8% Similarity=0.066 Sum_probs=43.0
Q ss_pred CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCC
Q psy7941 60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPP 137 (238)
Q Consensus 60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~ 137 (238)
+.|.+.+.|+|++..+.... ..++..... .....+|.|.+++.+|+|.|+|.+.|..+ ....+.+.|...|
T Consensus 31 g~P~p~i~W~k~g~~l~~~~-------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P 103 (118)
T 1wwc_A 31 GNPPPTLHWLHNGQPLRESK-------IIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEP 103 (118)
T ss_dssp CSSCCEEEEEETTEECCCSS-------SEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCSCCC
T ss_pred eeCCCeEEEEECCEECCCCC-------ceeEEEeccCccccEEEEECCCChhcCEEEEEEEECCCCeEeeEEEEEEccCC
Confidence 35577899999876543211 011111110 01233899999999999999999988643 3344445554444
No 499
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.07 E-value=3.6e-10 Score=81.82 Aligned_cols=86 Identities=23% Similarity=0.390 Sum_probs=64.5
Q ss_pred CceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCc
Q psy7941 146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTV 225 (238)
Q Consensus 146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~ 225 (238)
....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+..... ............|.|.++..+|.|.|+|.+.|..|. .
T Consensus 27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~-~~~~~~~~~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~-~ 102 (231)
T 3ojm_B 27 RLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHR--IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-I 102 (231)
T ss_dssp SCEEEETTSCEEEECCEEEESCCEEEEEE-TTEECCGGGS--TTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEE-E
T ss_pred eeEEEccCCCEEEEEecccCCCCeEEEEE-CCcccccccc--ccceeeecCcceEEEecCCcccCEEEEEEEecccCc-c
Confidence 45678899999999999999999999999 5554432211 111122334457999999999999999999999884 3
Q ss_pred cceEEEEEEe
Q psy7941 226 SKRLMLHVHC 235 (238)
Q Consensus 226 ~~~~~l~V~~ 235 (238)
...+.|.|..
T Consensus 103 ~~~~~l~V~~ 112 (231)
T 3ojm_B 103 NHTYHLDVVE 112 (231)
T ss_dssp EEEEEEEEEC
T ss_pred cccEEEEEEc
Confidence 6777777765
No 500
>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A
Probab=99.07 E-value=7e-09 Score=66.91 Aligned_cols=85 Identities=21% Similarity=0.332 Sum_probs=55.9
Q ss_pred CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc----eeeeeee---eeEe--e
Q psy7941 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT----KAVLAIH---EHVI--T 85 (238)
Q Consensus 15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~----~~~~~~~---~~~~--~ 85 (238)
+..+.+.+|++++|.|.+...... +...+.||+... ..+.... .... .
T Consensus 5 ~~~~~~~~G~~v~L~C~~~~~~~~-----------------------~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~ 61 (116)
T 3bj9_1 5 PPAMSSALGTTIRLTCTLRNDHDI-----------------------GVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQ 61 (116)
T ss_dssp CSEEEEETTCCEEEEEEECSSSCG-----------------------GGCCEEEEEECTTSCCEEEEEEEETTEEEECTT
T ss_pred CCcEEEcCCCcEEEEEEeecCccC-----------------------CCceEEEEEeCCCCCcEEEEEEecCCCceeCcc
Confidence 346889999999999999642100 134599998642 1121111 0111 1
Q ss_pred cCccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEecC
Q psy7941 86 NNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVNTN 122 (238)
Q Consensus 86 ~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~~~ 122 (238)
..+|+.+..... ..++|+|.+++.+|+|.|.|.+.+.
T Consensus 62 ~~~R~~~~~~~~~~~~sL~I~~~~~~DsG~Y~C~~~~~ 99 (116)
T 3bj9_1 62 VPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGAR 99 (116)
T ss_dssp CCTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCS
T ss_pred CCCcEEEEecCCCceEEEEECCCChhHCEEEEEEEeCC
Confidence 246787765433 4679999999999999999999654
Done!